Query 001791
Match_columns 1012
No_of_seqs 300 out of 2878
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 09:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 1E-112 3E-117 938.1 99.2 969 19-1011 1-973 (1075)
2 KOG2023 Nuclear transport rece 100.0 3.3E-64 7.2E-69 516.4 55.9 766 17-919 5-825 (885)
3 KOG1241 Karyopherin (importin) 100.0 2.4E-59 5.1E-64 489.9 64.8 764 23-881 2-823 (859)
4 COG5215 KAP95 Karyopherin (imp 100.0 5.3E-47 1.1E-51 382.9 62.6 705 19-775 1-839 (858)
5 KOG2171 Karyopherin (importin) 100.0 2.4E-36 5.2E-41 335.2 83.5 865 13-1004 28-1006(1075)
6 KOG2023 Nuclear transport rece 100.0 1.4E-36 3E-41 313.4 45.8 696 108-1005 15-781 (885)
7 KOG1824 TATA-binding protein-i 100.0 1.1E-33 2.3E-38 303.0 67.7 885 22-1011 47-1107(1233)
8 KOG1991 Nuclear transport rece 100.0 8E-32 1.7E-36 293.0 67.9 689 19-736 1-794 (1010)
9 KOG1824 TATA-binding protein-i 100.0 5.5E-30 1.2E-34 274.8 70.1 860 26-1005 9-967 (1233)
10 KOG1992 Nuclear export recepto 100.0 5.4E-26 1.2E-30 241.8 65.1 601 20-639 3-685 (960)
11 KOG1241 Karyopherin (importin) 100.0 1.9E-26 4.2E-31 243.4 56.1 661 11-744 23-813 (859)
12 KOG2274 Predicted importin 9 [ 100.0 2.4E-23 5.2E-28 224.4 59.1 598 19-643 1-668 (1005)
13 KOG1993 Nuclear transport rece 100.0 1.4E-22 3.1E-27 214.8 61.3 517 24-554 2-623 (978)
14 KOG0213 Splicing factor 3b, su 99.9 4.2E-22 9E-27 208.9 50.8 673 183-1005 363-1071(1172)
15 COG5656 SXM1 Importin, protein 99.9 3.9E-19 8.6E-24 187.5 64.1 512 21-551 2-587 (970)
16 KOG0213 Splicing factor 3b, su 99.9 2.6E-18 5.7E-23 180.8 60.5 685 23-801 364-1111(1172)
17 COG5215 KAP95 Karyopherin (imp 99.9 4.7E-17 1E-21 166.8 63.3 753 68-1004 16-814 (858)
18 COG5181 HSH155 U2 snRNP splice 99.9 2.7E-19 5.9E-24 184.4 40.1 682 184-979 169-898 (975)
19 PLN03200 cellulose synthase-in 99.9 4.6E-17 1E-21 198.0 62.9 803 21-973 12-884 (2102)
20 KOG2021 Nuclear mRNA export fa 99.9 5.1E-17 1.1E-21 171.9 53.9 603 22-643 3-747 (980)
21 COG5101 CRM1 Importin beta-rel 99.9 7.2E-15 1.6E-19 152.6 66.9 496 19-536 11-652 (1053)
22 KOG0915 Uncharacterized conser 99.9 6.7E-18 1.5E-22 192.1 48.0 630 229-974 816-1491(1702)
23 PLN03200 cellulose synthase-in 99.9 1.1E-15 2.4E-20 186.2 62.8 815 23-977 59-936 (2102)
24 KOG2022 Nuclear transport rece 99.8 5.3E-14 1.1E-18 152.8 66.7 601 20-642 5-754 (982)
25 COG5181 HSH155 U2 snRNP splice 99.8 1.6E-14 3.4E-19 149.7 53.6 688 20-801 166-916 (975)
26 COG5657 CSE1 CAS/CSE protein i 99.8 4.7E-14 1E-18 154.2 49.7 538 23-576 5-608 (947)
27 KOG1991 Nuclear transport rece 99.8 5.3E-12 1.1E-16 139.8 64.6 495 60-643 5-594 (1010)
28 KOG0915 Uncharacterized conser 99.7 3E-12 6.5E-17 147.0 58.2 650 182-955 816-1513(1702)
29 KOG1242 Protein containing ada 99.7 5.1E-14 1.1E-18 149.0 38.1 490 99-644 51-545 (569)
30 KOG1242 Protein containing ada 99.7 1.5E-13 3.2E-18 145.6 41.5 439 57-555 97-546 (569)
31 KOG1248 Uncharacterized conser 99.6 4.8E-09 1E-13 119.3 62.7 744 58-932 95-920 (1176)
32 KOG0212 Uncharacterized conser 99.6 1.8E-12 3.9E-17 133.9 32.6 393 108-535 5-409 (675)
33 KOG0212 Uncharacterized conser 99.6 2.5E-12 5.4E-17 132.9 33.6 412 189-644 5-425 (675)
34 KOG2081 Nuclear transport regu 99.6 6.8E-12 1.5E-16 131.0 37.2 437 40-506 2-510 (559)
35 PF01602 Adaptin_N: Adaptin N 99.6 9.8E-12 2.1E-16 144.1 42.1 482 17-576 36-523 (526)
36 PTZ00429 beta-adaptin; Provisi 99.6 5E-10 1.1E-14 128.1 53.9 473 23-580 33-510 (746)
37 PF01602 Adaptin_N: Adaptin N 99.6 2.7E-11 5.8E-16 140.5 44.6 510 22-618 7-520 (526)
38 PTZ00429 beta-adaptin; Provisi 99.6 8.7E-10 1.9E-14 126.1 53.2 472 22-576 68-545 (746)
39 KOG0166 Karyopherin (importin) 99.6 2E-12 4.3E-17 136.5 26.7 362 145-536 68-440 (514)
40 KOG0166 Karyopherin (importin) 99.5 4.8E-12 1E-16 133.7 26.0 360 186-579 68-438 (514)
41 KOG1992 Nuclear export recepto 99.5 4.2E-08 9.1E-13 106.9 55.4 711 68-961 16-803 (960)
42 KOG1943 Beta-tubulin folding c 99.5 5.3E-08 1.1E-12 109.7 55.4 476 98-625 336-840 (1133)
43 KOG0211 Protein phosphatase 2A 99.5 4.7E-10 1E-14 126.5 38.7 566 116-796 94-663 (759)
44 KOG0211 Protein phosphatase 2A 99.4 1E-09 2.2E-14 123.8 38.3 539 23-622 121-664 (759)
45 KOG1248 Uncharacterized conser 99.4 2.9E-07 6.3E-12 105.2 57.6 346 206-586 72-429 (1176)
46 KOG2274 Predicted importin 9 [ 99.3 4E-06 8.7E-11 93.1 60.2 165 764-957 610-785 (1005)
47 COG5064 SRP1 Karyopherin (impo 99.3 6.1E-11 1.3E-15 114.8 16.2 361 145-577 73-443 (526)
48 PF10508 Proteasom_PSMB: Prote 99.3 8.4E-08 1.8E-12 107.7 41.3 358 108-533 43-421 (503)
49 KOG1943 Beta-tubulin folding c 99.3 1.2E-05 2.7E-10 91.2 57.2 485 260-799 60-613 (1133)
50 KOG1967 DNA repair/transcripti 99.2 2.9E-06 6.4E-11 94.3 49.7 234 685-954 788-1026(1030)
51 PF08506 Cse1: Cse1; InterPro 99.2 2.4E-09 5.2E-14 113.0 25.2 256 221-485 72-370 (370)
52 KOG1062 Vesicle coat complex A 99.2 2.2E-06 4.7E-11 94.0 43.7 439 98-627 102-549 (866)
53 PF10508 Proteasom_PSMB: Prote 99.2 3.1E-07 6.7E-12 103.2 39.1 426 23-492 4-464 (503)
54 KOG1060 Vesicle coat complex A 99.1 1.2E-07 2.5E-12 102.9 32.2 440 22-536 71-537 (968)
55 PRK13800 putative oxidoreducta 99.1 1.4E-08 3.1E-13 122.8 27.9 275 144-529 622-896 (897)
56 PRK09687 putative lyase; Provi 99.1 1.3E-08 2.7E-13 104.0 23.3 251 188-528 27-278 (280)
57 KOG1060 Vesicle coat complex A 99.1 1.4E-06 3E-11 94.9 38.0 393 107-546 39-472 (968)
58 PRK13800 putative oxidoreducta 99.1 3.7E-08 8E-13 119.2 29.2 273 59-444 624-896 (897)
59 KOG2020 Nuclear transport rece 99.1 0.00013 2.7E-09 86.1 57.6 220 27-262 16-260 (1041)
60 COG5064 SRP1 Karyopherin (impo 99.1 2E-08 4.3E-13 97.7 20.2 360 106-535 74-446 (526)
61 PRK09687 putative lyase; Provi 99.1 3E-08 6.6E-13 101.3 22.9 254 145-487 25-279 (280)
62 PF12460 MMS19_C: RNAPII trans 99.0 9E-07 1.9E-11 97.4 35.2 382 146-552 2-414 (415)
63 KOG0392 SNF2 family DNA-depend 99.0 3.8E-05 8.3E-10 88.4 47.3 143 68-216 88-239 (1549)
64 PF12755 Vac14_Fab1_bd: Vacuol 99.0 4E-09 8.7E-14 86.8 11.5 94 393-489 2-95 (97)
65 KOG1061 Vesicle coat complex A 98.9 2.3E-06 5E-11 94.0 32.6 474 24-576 51-527 (734)
66 PF12348 CLASP_N: CLASP N term 98.9 5.5E-08 1.2E-12 98.3 19.2 191 378-580 8-209 (228)
67 KOG1062 Vesicle coat complex A 98.9 2.2E-05 4.8E-10 86.4 38.7 383 96-525 135-574 (866)
68 KOG1020 Sister chromatid cohes 98.9 0.00051 1.1E-08 81.3 54.1 114 455-580 811-924 (1692)
69 KOG1059 Vesicle coat complex A 98.9 1.8E-05 3.8E-10 85.8 36.0 254 183-491 143-402 (877)
70 KOG1240 Protein kinase contain 98.9 1.7E-07 3.6E-12 106.6 21.3 303 144-494 423-729 (1431)
71 KOG1059 Vesicle coat complex A 98.9 2.8E-05 6.1E-10 84.2 36.0 227 68-304 101-366 (877)
72 PF12460 MMS19_C: RNAPII trans 98.9 7E-06 1.5E-10 90.5 33.0 391 421-888 2-413 (415)
73 KOG1020 Sister chromatid cohes 98.8 0.00085 1.8E-08 79.5 61.7 146 375-531 814-959 (1692)
74 COG5240 SEC21 Vesicle coat com 98.8 0.00037 8.1E-09 73.7 43.3 409 103-580 22-445 (898)
75 COG5240 SEC21 Vesicle coat com 98.8 5.6E-05 1.2E-09 79.6 33.7 289 181-531 261-554 (898)
76 KOG1240 Protein kinase contain 98.7 4.2E-06 9.1E-11 95.6 26.6 300 187-535 425-728 (1431)
77 KOG4224 Armadillo repeat prote 98.7 5.1E-07 1.1E-11 89.0 16.1 382 120-535 63-449 (550)
78 KOG4224 Armadillo repeat prote 98.7 4.8E-06 1E-10 82.4 22.2 389 108-535 90-496 (550)
79 KOG0891 DNA-dependent protein 98.7 0.00084 1.8E-08 85.8 46.6 541 374-1003 131-723 (2341)
80 PF12348 CLASP_N: CLASP N term 98.7 7.3E-07 1.6E-11 90.1 16.6 183 352-541 21-215 (228)
81 KOG0414 Chromosome condensatio 98.6 0.0027 5.9E-08 73.7 61.1 160 140-303 267-428 (1251)
82 COG5656 SXM1 Importin, protein 98.6 0.0022 4.7E-08 70.5 61.9 589 68-744 14-713 (970)
83 PF03810 IBN_N: Importin-beta 98.5 5.2E-07 1.1E-11 72.7 8.2 67 42-113 1-76 (77)
84 KOG2259 Uncharacterized conser 98.4 0.00071 1.5E-08 73.1 30.6 295 182-535 196-514 (823)
85 KOG2032 Uncharacterized conser 98.4 0.00018 3.9E-09 75.1 25.5 165 376-541 216-380 (533)
86 KOG1058 Vesicle coat complex C 98.4 0.0038 8.3E-08 68.7 35.9 430 27-535 25-466 (948)
87 PF12755 Vac14_Fab1_bd: Vacuol 98.4 4.2E-06 9E-11 69.1 10.8 94 898-998 2-95 (97)
88 cd00020 ARM Armadillo/beta-cat 98.4 2.6E-06 5.6E-11 76.2 10.6 111 378-490 8-120 (120)
89 PF03378 CAS_CSE1: CAS/CSE pro 98.4 0.00055 1.2E-08 74.6 30.0 241 493-788 16-263 (435)
90 KOG4535 HEAT and armadillo rep 98.3 0.00056 1.2E-08 70.8 27.0 430 118-576 10-558 (728)
91 PF13513 HEAT_EZ: HEAT-like re 98.3 1.2E-06 2.6E-11 64.7 5.8 55 391-445 1-55 (55)
92 KOG2021 Nuclear mRNA export fa 98.3 0.011 2.3E-07 65.4 53.4 74 855-932 712-785 (980)
93 KOG1077 Vesicle coat complex A 98.3 0.0042 9E-08 67.9 33.2 353 150-550 81-451 (938)
94 KOG1061 Vesicle coat complex A 98.3 0.00074 1.6E-08 75.0 28.4 406 22-489 86-527 (734)
95 KOG1078 Vesicle coat complex C 98.3 0.0075 1.6E-07 67.1 35.6 290 181-533 242-533 (865)
96 KOG4535 HEAT and armadillo rep 98.3 0.0015 3.4E-08 67.7 28.1 480 154-651 7-590 (728)
97 KOG0168 Putative ubiquitin fus 98.3 0.0047 1E-07 69.0 33.5 249 20-280 165-434 (1051)
98 KOG2022 Nuclear transport rece 98.3 0.017 3.6E-07 65.3 40.5 169 418-597 462-639 (982)
99 KOG1058 Vesicle coat complex C 98.2 0.015 3.3E-07 64.2 36.5 354 31-450 108-466 (948)
100 KOG2956 CLIP-associating prote 98.2 0.00013 2.9E-09 75.5 20.1 204 377-594 287-494 (516)
101 KOG1820 Microtubule-associated 98.2 5.6E-05 1.2E-09 87.0 18.1 208 372-592 248-458 (815)
102 KOG0168 Putative ubiquitin fus 98.1 0.0018 3.9E-08 72.2 27.3 199 375-578 209-414 (1051)
103 COG5096 Vesicle coat complex, 98.1 0.031 6.8E-07 63.9 39.8 138 22-173 55-196 (757)
104 PF05804 KAP: Kinesin-associat 98.1 0.0084 1.8E-07 68.9 33.8 472 20-534 121-651 (708)
105 KOG1078 Vesicle coat complex C 98.1 0.027 5.9E-07 62.8 41.0 364 140-580 61-424 (865)
106 KOG2259 Uncharacterized conser 98.1 0.017 3.6E-07 63.0 32.9 309 502-883 197-525 (823)
107 KOG1077 Vesicle coat complex A 98.1 0.027 5.9E-07 61.9 43.8 317 151-508 119-450 (938)
108 PF08389 Xpo1: Exportin 1-like 98.1 2.9E-05 6.4E-10 72.4 11.2 128 118-255 2-148 (148)
109 KOG4413 26S proteasome regulat 98.1 0.0062 1.3E-07 60.2 26.8 292 124-449 63-379 (524)
110 KOG1993 Nuclear transport rece 98.1 0.037 8.1E-07 61.8 57.1 389 475-959 411-819 (978)
111 PF13513 HEAT_EZ: HEAT-like re 98.0 1.2E-05 2.7E-10 59.3 5.4 55 432-488 1-55 (55)
112 cd00020 ARM Armadillo/beta-cat 98.0 1.9E-05 4.2E-10 70.5 7.8 110 419-531 8-119 (120)
113 KOG1410 Nuclear transport rece 98.0 0.042 9.1E-07 60.0 49.4 146 21-173 4-158 (1082)
114 KOG2956 CLIP-associating prote 98.0 0.00024 5.3E-09 73.6 15.6 167 374-549 326-495 (516)
115 PF12717 Cnd1: non-SMC mitotic 98.0 0.00031 6.7E-09 67.1 15.4 111 390-509 1-111 (178)
116 KOG1967 DNA repair/transcripti 97.9 0.074 1.6E-06 60.7 58.4 123 878-1004 864-987 (1030)
117 KOG0889 Histone acetyltransfer 97.9 0.21 4.5E-06 65.8 51.7 523 178-742 715-1306(3550)
118 COG5096 Vesicle coat complex, 97.9 0.031 6.7E-07 63.9 31.7 164 33-215 30-196 (757)
119 PF13646 HEAT_2: HEAT repeats; 97.8 0.00012 2.5E-09 60.9 9.3 86 380-486 2-88 (88)
120 PF03378 CAS_CSE1: CAS/CSE pro 97.8 0.0043 9.3E-08 67.7 22.6 310 224-555 19-350 (435)
121 KOG2032 Uncharacterized conser 97.8 0.017 3.8E-07 60.9 25.2 263 143-447 258-531 (533)
122 KOG2933 Uncharacterized conser 97.8 0.00079 1.7E-08 66.3 14.5 150 377-535 88-237 (334)
123 PF12717 Cnd1: non-SMC mitotic 97.8 0.0031 6.7E-08 60.2 18.6 134 117-260 1-139 (178)
124 PF04510 DUF577: Family of unk 97.7 0.0031 6.8E-08 56.7 16.8 156 103-262 3-166 (174)
125 PLN03076 ARF guanine nucleotid 97.7 0.056 1.2E-06 68.9 33.6 311 140-471 1134-1513(1780)
126 KOG0414 Chromosome condensatio 97.7 0.19 4.2E-06 59.2 39.9 471 25-533 544-1065(1251)
127 KOG1293 Proteins containing ar 97.7 0.12 2.6E-06 56.8 31.5 145 388-534 388-535 (678)
128 PF08167 RIX1: rRNA processing 97.7 0.001 2.2E-08 62.2 14.4 138 414-553 21-164 (165)
129 KOG1822 Uncharacterized conser 97.7 0.3 6.5E-06 60.6 39.9 232 286-542 888-1137(2067)
130 PF10274 ParcG: Parkin co-regu 97.7 0.0006 1.3E-08 62.9 12.0 97 457-554 35-134 (183)
131 KOG4524 Uncharacterized conser 97.7 0.19 4E-06 58.1 47.4 115 437-555 567-685 (1014)
132 KOG0392 SNF2 family DNA-depend 97.7 0.23 5E-06 58.9 44.1 178 139-332 71-260 (1549)
133 PF14500 MMS19_N: Dos2-interac 97.7 0.017 3.7E-07 58.4 23.3 247 148-425 4-257 (262)
134 KOG2062 26S proteasome regulat 97.7 0.13 2.9E-06 57.1 30.9 157 377-555 519-676 (929)
135 PF05804 KAP: Kinesin-associat 97.7 0.029 6.3E-07 64.6 27.7 356 116-491 262-650 (708)
136 cd00256 VATPase_H VATPase_H, r 97.6 0.039 8.4E-07 59.5 26.5 353 53-446 50-424 (429)
137 PF04826 Arm_2: Armadillo-like 97.6 0.0034 7.5E-08 62.9 17.4 190 380-580 15-208 (254)
138 KOG4653 Uncharacterized conser 97.6 0.0056 1.2E-07 68.7 20.3 234 462-744 729-966 (982)
139 PF05004 IFRD: Interferon-rela 97.6 0.013 2.9E-07 61.1 22.4 201 421-625 46-260 (309)
140 KOG1820 Microtubule-associated 97.6 0.0035 7.5E-08 72.7 18.5 164 374-545 292-457 (815)
141 PF11864 DUF3384: Domain of un 97.5 0.19 4.2E-06 56.4 31.5 298 119-451 5-335 (464)
142 PF08167 RIX1: rRNA processing 97.5 0.0027 5.8E-08 59.5 14.2 139 140-280 22-163 (165)
143 PF05004 IFRD: Interferon-rela 97.5 0.061 1.3E-06 56.2 25.5 212 726-976 56-285 (309)
144 KOG4413 26S proteasome regulat 97.5 0.12 2.7E-06 51.3 29.5 335 163-531 63-438 (524)
145 KOG4653 Uncharacterized conser 97.5 0.017 3.7E-07 65.0 21.5 219 287-533 740-965 (982)
146 PF13646 HEAT_2: HEAT repeats; 97.5 0.00056 1.2E-08 56.8 8.2 86 420-528 1-88 (88)
147 KOG0413 Uncharacterized conser 97.5 0.34 7.4E-06 55.6 34.3 136 854-1006 945-1081(1529)
148 KOG0946 ER-Golgi vesicle-tethe 97.5 0.3 6.6E-06 54.9 40.9 116 142-262 121-243 (970)
149 KOG1517 Guanine nucleotide bin 97.4 0.02 4.3E-07 65.8 21.6 147 390-537 570-737 (1387)
150 PF14500 MMS19_N: Dos2-interac 97.4 0.052 1.1E-06 55.0 22.8 246 189-467 4-257 (262)
151 PLN03076 ARF guanine nucleotid 97.4 0.9 2E-05 58.5 45.2 198 68-268 1148-1384(1780)
152 PF10274 ParcG: Parkin co-regu 97.4 0.0033 7.1E-08 58.2 12.3 95 881-976 38-136 (183)
153 PF08506 Cse1: Cse1; InterPro 97.4 0.3 6.5E-06 52.4 31.3 131 391-527 225-370 (370)
154 PF13251 DUF4042: Domain of un 97.4 0.0021 4.6E-08 60.1 11.2 143 392-534 1-176 (182)
155 PF02985 HEAT: HEAT repeat; I 97.3 0.00032 7E-09 44.0 3.8 30 924-953 1-30 (31)
156 KOG4524 Uncharacterized conser 97.3 0.58 1.3E-05 54.3 55.2 84 892-975 813-900 (1014)
157 KOG2759 Vacuolar H+-ATPase V1 97.3 0.27 5.9E-06 51.3 26.0 354 56-447 65-438 (442)
158 PF05918 API5: Apoptosis inhib 97.3 0.07 1.5E-06 59.2 23.2 142 423-585 28-170 (556)
159 KOG2160 Armadillo/beta-catenin 97.3 0.018 3.9E-07 58.8 17.2 149 387-537 93-245 (342)
160 PF02985 HEAT: HEAT repeat; I 97.2 0.00049 1.1E-08 43.2 3.6 30 419-448 1-30 (31)
161 PF05918 API5: Apoptosis inhib 97.2 0.44 9.5E-06 53.1 28.1 171 68-258 33-205 (556)
162 COG1413 FOG: HEAT repeat [Ener 97.1 0.15 3.3E-06 55.0 24.3 261 184-531 43-303 (335)
163 PF13251 DUF4042: Domain of un 97.1 0.0077 1.7E-07 56.4 11.9 141 119-262 1-176 (182)
164 PF08064 UME: UME (NUC010) dom 97.1 0.0079 1.7E-07 51.2 11.0 97 497-599 5-105 (107)
165 COG1413 FOG: HEAT repeat [Ener 97.1 0.11 2.4E-06 56.1 22.6 254 143-492 43-306 (335)
166 KOG4500 Rho/Rac GTPase guanine 97.1 0.34 7.3E-06 50.5 23.7 154 376-533 314-476 (604)
167 PF04826 Arm_2: Armadillo-like 97.0 0.025 5.5E-07 56.8 15.8 186 106-303 15-205 (254)
168 KOG2062 26S proteasome regulat 97.0 0.29 6.2E-06 54.7 24.0 58 376-433 623-680 (929)
169 TIGR02270 conserved hypothetic 97.0 0.41 9E-06 52.0 25.3 241 105-447 56-296 (410)
170 PF11865 DUF3385: Domain of un 96.9 0.0096 2.1E-07 55.2 10.9 147 374-534 7-159 (160)
171 smart00802 UME Domain in UVSB 96.8 0.015 3.2E-07 49.0 10.3 97 497-599 5-105 (107)
172 PF12719 Cnd3: Nuclear condens 96.8 0.058 1.3E-06 56.7 17.4 150 416-578 24-182 (298)
173 KOG1949 Uncharacterized conser 96.8 0.14 3E-06 56.5 19.7 220 68-304 99-332 (1005)
174 TIGR02270 conserved hypothetic 96.8 0.29 6.2E-06 53.3 22.4 242 142-489 53-295 (410)
175 PF10521 DUF2454: Protein of u 96.8 0.059 1.3E-06 55.8 16.5 166 390-556 88-277 (282)
176 PF12719 Cnd3: Nuclear condens 96.7 0.15 3.2E-06 53.6 19.1 108 380-492 30-145 (298)
177 PF08569 Mo25: Mo25-like; Int 96.6 1.1 2.5E-05 47.1 24.7 188 108-304 81-284 (335)
178 PF01603 B56: Protein phosphat 96.6 0.19 4.2E-06 55.1 19.6 240 20-271 131-381 (409)
179 KOG0891 DNA-dependent protein 96.5 5.2 0.00011 53.0 64.4 263 423-739 486-760 (2341)
180 cd00256 VATPase_H VATPase_H, r 96.5 1.7 3.7E-05 47.2 28.8 302 61-405 106-424 (429)
181 KOG2933 Uncharacterized conser 96.5 0.042 9E-07 54.6 12.1 133 852-997 100-232 (334)
182 COG5116 RPN2 26S proteasome re 96.5 0.026 5.7E-07 60.2 11.2 155 379-555 518-673 (926)
183 PF08064 UME: UME (NUC010) dom 96.4 0.05 1.1E-06 46.4 11.0 79 893-973 26-105 (107)
184 smart00802 UME Domain in UVSB 96.4 0.037 8E-07 46.7 9.5 98 411-512 4-105 (107)
185 KOG1293 Proteins containing ar 96.4 2.4 5.1E-05 47.3 34.4 143 428-576 387-532 (678)
186 KOG1243 Protein kinase [Genera 96.2 0.093 2E-06 58.4 14.4 254 241-534 264-517 (690)
187 KOG2149 Uncharacterized conser 96.2 0.11 2.3E-06 54.2 13.9 133 420-554 60-192 (393)
188 KOG2025 Chromosome condensatio 96.2 2.9 6.3E-05 47.0 25.2 221 6-256 19-255 (892)
189 PF13001 Ecm29: Proteasome sta 96.1 3.5 7.5E-05 46.9 28.2 175 355-536 254-447 (501)
190 PF11865 DUF3385: Domain of un 96.1 0.064 1.4E-06 49.7 10.6 72 882-953 87-158 (160)
191 KOG2025 Chromosome condensatio 95.9 4.1 8.9E-05 45.9 34.9 164 23-211 86-256 (892)
192 PF13001 Ecm29: Proteasome sta 95.8 4.6 0.0001 45.9 30.2 83 24-114 25-113 (501)
193 KOG1517 Guanine nucleotide bin 95.8 0.52 1.1E-05 54.9 17.9 230 21-264 471-736 (1387)
194 PF01603 B56: Protein phosphat 95.7 4 8.7E-05 44.9 24.5 229 57-303 134-370 (409)
195 PF08767 CRM1_C: CRM1 C termin 95.7 1.4 2.9E-05 46.6 20.0 121 859-979 91-229 (319)
196 KOG0803 Predicted E3 ubiquitin 95.7 1.2 2.6E-05 55.0 21.6 109 186-301 43-151 (1312)
197 KOG0413 Uncharacterized conser 95.6 6.6 0.00014 45.8 27.3 132 391-536 945-1077(1529)
198 COG5095 TAF6 Transcription ini 95.4 0.78 1.7E-05 45.3 15.3 150 413-578 196-360 (450)
199 KOG1243 Protein kinase [Genera 95.4 0.34 7.3E-06 54.2 14.4 189 100-303 327-515 (690)
200 KOG2160 Armadillo/beta-catenin 95.4 3.9 8.6E-05 42.3 22.4 170 32-216 93-284 (342)
201 PF10363 DUF2435: Protein of u 95.4 0.23 5E-06 40.7 10.1 84 461-554 4-87 (92)
202 PF10521 DUF2454: Protein of u 95.4 0.33 7.1E-06 50.3 13.9 146 139-285 115-278 (282)
203 PF11864 DUF3384: Domain of un 95.3 6.5 0.00014 44.3 37.4 244 37-303 5-285 (464)
204 PF12231 Rif1_N: Rap1-interact 95.3 5.5 0.00012 43.3 32.3 276 198-535 6-306 (372)
205 KOG2759 Vacuolar H+-ATPase V1 95.2 4 8.7E-05 43.0 20.4 70 418-490 366-438 (442)
206 PF04118 Dopey_N: Dopey, N-ter 95.2 4.1 8.8E-05 42.3 20.8 112 407-527 127-249 (307)
207 COG5101 CRM1 Importin beta-rel 95.2 6.4 0.00014 43.6 50.0 74 139-215 188-262 (1053)
208 PF05536 Neurochondrin: Neuroc 95.2 7.6 0.00017 44.4 32.8 238 378-627 6-266 (543)
209 KOG1837 Uncharacterized conser 95.2 12 0.00026 46.6 33.6 98 859-961 1523-1620(1621)
210 PF08767 CRM1_C: CRM1 C termin 95.2 3.2 7E-05 43.9 20.5 102 389-490 132-244 (319)
211 KOG2137 Protein kinase [Signal 95.1 0.71 1.5E-05 52.0 15.8 172 373-553 345-517 (700)
212 KOG2137 Protein kinase [Signal 95.1 2.4 5.3E-05 47.9 19.9 112 140-261 386-497 (700)
213 cd08050 TAF6 TATA Binding Prot 95.1 0.25 5.4E-06 52.6 12.1 99 895-997 230-338 (343)
214 PF08623 TIP120: TATA-binding 95.0 0.12 2.5E-06 47.7 8.0 126 875-1003 3-151 (169)
215 PF03224 V-ATPase_H_N: V-ATPas 94.9 1.7 3.8E-05 46.0 17.9 201 53-264 52-273 (312)
216 KOG1949 Uncharacterized conser 94.8 0.37 8E-06 53.4 12.4 149 380-531 177-330 (1005)
217 KOG2549 Transcription initiati 94.8 2 4.2E-05 46.9 17.6 165 414-595 207-388 (576)
218 PF10363 DUF2435: Protein of u 94.8 0.16 3.5E-06 41.6 7.7 75 924-1005 4-78 (92)
219 KOG2149 Uncharacterized conser 94.8 0.76 1.7E-05 48.1 14.0 131 142-277 57-187 (393)
220 KOG0567 HEAT repeat-containing 94.7 3.2 7E-05 40.8 16.8 85 383-489 193-279 (289)
221 PF05536 Neurochondrin: Neuroc 94.6 11 0.00024 43.1 32.0 237 59-304 8-262 (543)
222 KOG1048 Neural adherens juncti 94.5 5.3 0.00011 45.8 20.8 109 421-533 236-350 (717)
223 KOG1851 Uncharacterized conser 94.4 19 0.00041 45.0 36.4 177 356-538 1505-1684(1710)
224 COG5095 TAF6 Transcription ini 94.3 2 4.4E-05 42.6 14.7 97 858-954 254-361 (450)
225 PF12054 DUF3535: Domain of un 94.2 4.5 9.8E-05 44.8 19.6 240 391-647 101-367 (441)
226 KOG1048 Neural adherens juncti 94.2 13 0.00028 42.8 22.9 363 141-531 230-640 (717)
227 PF08623 TIP120: TATA-binding 94.1 1.1 2.3E-05 41.5 12.0 97 455-555 4-117 (169)
228 PF12333 Ipi1_N: Rix1 complex 94.0 0.45 9.8E-06 40.1 8.9 62 915-976 3-65 (102)
229 KOG0946 ER-Golgi vesicle-tethe 94.0 14 0.00031 42.4 39.1 177 355-533 40-242 (970)
230 COG5218 YCG1 Chromosome conden 94.0 2.2 4.7E-05 46.7 15.6 123 78-209 68-194 (885)
231 KOG2549 Transcription initiati 93.7 0.67 1.5E-05 50.3 11.4 83 895-977 260-352 (576)
232 PF12530 DUF3730: Protein of u 93.7 8.5 0.00018 38.6 20.4 194 33-246 12-218 (234)
233 cd08050 TAF6 TATA Binding Prot 93.6 0.93 2E-05 48.3 12.5 124 421-555 181-320 (343)
234 KOG1525 Sister chromatid cohes 93.3 29 0.00063 43.6 55.7 160 358-520 242-441 (1266)
235 PF08161 NUC173: NUC173 domain 93.2 1.7 3.8E-05 41.8 12.5 120 507-640 4-123 (198)
236 KOG3961 Uncharacterized conser 93.1 0.24 5.2E-06 46.2 6.0 91 882-973 115-208 (262)
237 smart00638 LPD_N Lipoprotein N 92.9 8.1 0.00017 45.3 20.2 135 377-528 393-541 (574)
238 PF12054 DUF3535: Domain of un 92.7 6.6 0.00014 43.6 17.8 77 432-513 101-178 (441)
239 COG5116 RPN2 26S proteasome re 92.6 7.1 0.00015 42.7 16.7 155 108-285 520-675 (926)
240 PF12231 Rif1_N: Rap1-interact 92.5 19 0.0004 39.3 34.6 300 412-796 33-351 (372)
241 PF01347 Vitellogenin_N: Lipop 92.3 3.6 7.9E-05 48.8 16.6 149 358-527 414-584 (618)
242 PF04118 Dopey_N: Dopey, N-ter 92.3 4.6 0.0001 41.9 14.8 149 387-537 21-172 (307)
243 KOG0567 HEAT repeat-containing 92.2 5.4 0.00012 39.3 14.0 169 378-576 68-248 (289)
244 PF01347 Vitellogenin_N: Lipop 92.2 13 0.00029 44.0 21.1 140 57-211 432-586 (618)
245 KOG2122 Beta-catenin-binding p 91.9 42 0.0009 41.9 26.7 75 922-1003 529-605 (2195)
246 PF12830 Nipped-B_C: Sister ch 91.6 5.5 0.00012 38.3 13.8 65 23-88 9-76 (187)
247 KOG3961 Uncharacterized conser 91.5 0.72 1.6E-05 43.2 7.1 93 458-552 112-207 (262)
248 PF00790 VHS: VHS domain; Int 91.5 4.2 9.2E-05 36.9 12.2 96 499-594 38-135 (140)
249 KOG1525 Sister chromatid cohes 91.3 49 0.0011 41.6 40.5 295 115-448 61-406 (1266)
250 KOG3036 Protein involved in ce 91.2 9.6 0.00021 37.1 14.3 210 1-214 1-247 (293)
251 cd03561 VHS VHS domain family; 90.8 4.2 9.2E-05 36.5 11.4 78 417-494 36-116 (133)
252 PF03224 V-ATPase_H_N: V-ATPas 90.7 7.1 0.00015 41.4 15.0 132 419-556 106-251 (312)
253 KOG2081 Nuclear transport regu 90.5 32 0.0007 38.2 38.5 152 430-594 401-553 (559)
254 cd03568 VHS_STAM VHS domain fa 90.4 4.4 9.6E-05 36.7 11.1 78 417-494 36-114 (144)
255 COG5657 CSE1 CAS/CSE protein i 90.4 44 0.00095 39.5 47.5 156 67-240 14-179 (947)
256 COG5231 VMA13 Vacuolar H+-ATPa 90.2 23 0.0005 36.0 19.4 70 378-447 357-428 (432)
257 PF00514 Arm: Armadillo/beta-c 90.2 0.59 1.3E-05 31.6 4.1 29 418-446 12-40 (41)
258 PF12074 DUF3554: Domain of un 89.7 32 0.0007 37.0 19.4 220 100-332 19-255 (339)
259 KOG1822 Uncharacterized conser 89.5 77 0.0017 41.0 60.7 192 106-304 54-249 (2067)
260 PF00514 Arm: Armadillo/beta-c 89.5 0.66 1.4E-05 31.3 4.0 29 923-951 12-40 (41)
261 PF14664 RICTOR_N: Rapamycin-i 89.4 35 0.00076 36.9 22.7 234 140-406 22-269 (371)
262 cd03569 VHS_Hrs_Vps27p VHS dom 89.2 7.9 0.00017 35.1 11.8 89 417-508 40-129 (142)
263 KOG2213 Apoptosis inhibitor 5/ 89.0 27 0.00059 36.7 16.3 61 475-535 255-317 (460)
264 PF08389 Xpo1: Exportin 1-like 88.8 2.8 6.2E-05 38.5 9.2 105 375-485 24-148 (148)
265 smart00638 LPD_N Lipoprotein N 88.7 20 0.00044 42.0 18.2 177 19-211 354-542 (574)
266 PF11698 V-ATPase_H_C: V-ATPas 88.5 2.3 5.1E-05 36.5 7.3 71 882-953 44-116 (119)
267 PF11698 V-ATPase_H_C: V-ATPas 88.3 2.2 4.8E-05 36.7 7.0 69 419-490 44-115 (119)
268 KOG1851 Uncharacterized conser 88.2 85 0.0018 39.8 35.9 141 432-580 1501-1641(1710)
269 KOG0929 Guanine nucleotide exc 88.0 41 0.00088 42.6 19.8 162 115-282 1048-1226(1514)
270 KOG4500 Rho/Rac GTPase guanine 87.8 42 0.00091 35.8 25.5 113 141-258 313-429 (604)
271 PF12333 Ipi1_N: Rix1 complex 87.7 4.9 0.00011 33.9 8.8 62 410-471 3-64 (102)
272 PF09324 DUF1981: Domain of un 87.5 5.2 0.00011 32.5 8.5 69 183-256 16-84 (86)
273 PF04078 Rcd1: Cell differenti 87.3 11 0.00023 37.6 12.0 134 859-998 69-217 (262)
274 cd03568 VHS_STAM VHS domain fa 87.3 6.8 0.00015 35.5 10.1 76 376-451 36-114 (144)
275 smart00288 VHS Domain present 86.5 13 0.00028 33.3 11.5 78 417-494 36-115 (133)
276 PF08146 BP28CT: BP28CT (NUC21 86.5 13 0.00028 34.2 11.6 76 859-934 40-119 (153)
277 KOG2005 26S proteasome regulat 86.5 35 0.00076 38.6 16.3 66 377-448 640-705 (878)
278 KOG1848 Uncharacterized conser 86.1 35 0.00076 42.2 17.3 83 924-1006 998-1089(1610)
279 cd03567 VHS_GGA VHS domain fam 85.8 19 0.0004 32.5 11.9 101 385-493 13-119 (139)
280 KOG3036 Protein involved in ce 85.7 31 0.00066 33.9 13.6 73 882-954 125-199 (293)
281 PF00790 VHS: VHS domain; Int 85.5 11 0.00024 34.1 10.7 79 416-494 40-122 (140)
282 KOG1222 Kinesin associated pro 85.5 58 0.0013 35.2 24.2 93 394-488 280-372 (791)
283 PF12830 Nipped-B_C: Sister ch 85.3 20 0.00044 34.4 12.9 71 417-493 7-77 (187)
284 PF04510 DUF577: Family of unk 84.5 4.1 8.9E-05 37.4 7.1 90 460-557 3-97 (174)
285 PF12530 DUF3730: Protein of u 84.5 47 0.001 33.3 22.4 198 61-284 5-215 (234)
286 KOG0889 Histone acetyltransfer 84.3 2E+02 0.0043 40.3 59.7 175 459-639 983-1172(3550)
287 smart00288 VHS Domain present 83.5 26 0.00057 31.4 12.0 80 500-581 34-115 (133)
288 KOG0803 Predicted E3 ubiquitin 83.3 1.3E+02 0.0028 38.2 21.1 104 385-490 49-153 (1312)
289 PF09324 DUF1981: Domain of un 83.2 9.1 0.0002 31.1 8.0 67 882-948 18-84 (86)
290 PF12765 Cohesin_HEAT: HEAT re 83.0 1.8 3.9E-05 29.3 3.3 26 417-442 17-42 (42)
291 COG5218 YCG1 Chromosome conden 82.2 91 0.002 34.9 33.9 164 23-210 92-262 (885)
292 KOG2122 Beta-catenin-binding p 82.1 1.5E+02 0.0033 37.5 26.3 72 377-448 530-602 (2195)
293 KOG2256 Predicted protein invo 82.0 1E+02 0.0022 35.3 18.2 184 456-641 278-475 (661)
294 cd03561 VHS VHS domain family; 81.2 9.4 0.0002 34.2 8.3 78 458-536 35-116 (133)
295 PF14664 RICTOR_N: Rapamycin-i 80.9 88 0.0019 33.9 21.6 232 232-493 26-272 (371)
296 PF11935 DUF3453: Domain of un 80.6 67 0.0015 32.3 16.2 127 193-330 2-162 (239)
297 cd03569 VHS_Hrs_Vps27p VHS dom 80.1 27 0.00059 31.7 10.8 80 500-582 38-119 (142)
298 PF11919 DUF3437: Domain of un 80.0 3 6.5E-05 34.0 4.1 61 392-453 4-64 (90)
299 KOG2199 Signal transducing ada 79.3 17 0.00036 38.1 9.9 110 378-495 13-123 (462)
300 PF11701 UNC45-central: Myosin 79.2 12 0.00026 34.7 8.5 133 68-210 16-155 (157)
301 PF08713 DNA_alkylation: DNA a 79.2 42 0.00092 33.1 13.3 143 376-542 50-194 (213)
302 PF12074 DUF3554: Domain of un 78.1 1E+02 0.0023 33.1 20.4 176 372-554 56-254 (339)
303 PF07571 DUF1546: Protein of u 78.0 11 0.00024 31.0 7.0 61 934-998 17-77 (92)
304 cd03572 ENTH_epsin_related ENT 77.6 29 0.00063 30.3 9.6 77 921-997 36-117 (122)
305 cd03572 ENTH_epsin_related ENT 77.1 40 0.00086 29.5 10.3 75 415-490 35-119 (122)
306 cd03567 VHS_GGA VHS domain fam 76.3 35 0.00076 30.8 10.2 75 377-451 38-120 (139)
307 cd03565 VHS_Tom1 VHS domain fa 76.3 45 0.00097 30.2 11.0 79 417-495 37-120 (141)
308 PF14668 RICTOR_V: Rapamycin-i 75.9 8 0.00017 30.0 5.2 55 393-449 3-60 (73)
309 PF04388 Hamartin: Hamartin pr 75.8 37 0.00079 40.2 13.1 77 857-933 85-162 (668)
310 PF12765 Cohesin_HEAT: HEAT re 75.6 5.4 0.00012 27.1 3.8 40 167-209 3-42 (42)
311 PF14225 MOR2-PAG1_C: Cell mor 75.5 81 0.0018 32.2 13.8 140 378-535 112-257 (262)
312 KOG2256 Predicted protein invo 75.2 1.6E+02 0.0035 33.8 20.9 72 902-974 400-478 (661)
313 KOG2973 Uncharacterized conser 74.9 26 0.00056 35.7 9.7 105 381-490 7-111 (353)
314 PF07571 DUF1546: Protein of u 74.8 15 0.00033 30.3 7.0 61 154-214 17-78 (92)
315 PF11701 UNC45-central: Myosin 74.3 19 0.00041 33.4 8.4 131 354-487 21-156 (157)
316 PF12783 Sec7_N: Guanine nucle 72.6 78 0.0017 29.8 12.4 106 198-303 35-146 (168)
317 PF11229 DUF3028: Protein of u 72.6 1.6E+02 0.0035 32.6 19.1 132 862-999 215-353 (589)
318 smart00185 ARM Armadillo/beta- 72.5 5.2 0.00011 26.7 3.3 28 419-446 13-40 (41)
319 KOG2973 Uncharacterized conser 71.8 19 0.00042 36.5 8.0 106 421-532 6-111 (353)
320 PF12726 SEN1_N: SEN1 N termin 71.0 2.5E+02 0.0054 34.1 35.5 163 104-269 78-252 (727)
321 PF08713 DNA_alkylation: DNA a 70.9 8.3 0.00018 38.2 5.7 70 376-451 119-188 (213)
322 cd00872 PI3Ka_I Phosphoinositi 70.8 20 0.00043 33.6 7.5 81 20-116 37-118 (171)
323 PF04078 Rcd1: Cell differenti 70.5 1.2E+02 0.0027 30.5 16.9 75 140-215 91-169 (262)
324 PF12397 U3snoRNP10: U3 small 70.4 27 0.0006 30.6 8.2 74 878-954 3-76 (121)
325 PF12783 Sec7_N: Guanine nucle 70.2 56 0.0012 30.7 10.8 98 391-490 36-146 (168)
326 KOG2011 Sister chromatid cohes 70.2 2.7E+02 0.006 34.3 22.8 99 193-300 296-396 (1048)
327 KOG2213 Apoptosis inhibitor 5/ 70.1 1.6E+02 0.0034 31.4 20.6 54 685-743 38-91 (460)
328 KOG2085 Serine/threonine prote 69.9 74 0.0016 33.9 11.9 116 182-303 297-414 (457)
329 PF04388 Hamartin: Hamartin pr 69.8 88 0.0019 37.1 14.3 94 181-281 67-161 (668)
330 PF08161 NUC173: NUC173 domain 69.1 1.2E+02 0.0025 29.5 14.6 57 397-453 20-76 (198)
331 cd00197 VHS_ENTH_ANTH VHS, ENT 68.7 62 0.0014 28.0 10.0 73 373-445 33-113 (115)
332 smart00185 ARM Armadillo/beta- 68.2 7.4 0.00016 25.9 3.3 28 924-951 13-40 (41)
333 PF11841 DUF3361: Domain of un 67.2 1E+02 0.0022 28.4 11.0 102 855-957 32-136 (160)
334 COG5369 Uncharacterized conser 67.0 22 0.00047 39.0 7.7 136 394-532 406-545 (743)
335 KOG1877 Putative transmembrane 66.5 2.8E+02 0.0062 33.1 17.5 318 141-470 15-349 (819)
336 cd06561 AlkD_like A new struct 64.4 28 0.0006 33.9 7.8 67 380-451 108-174 (197)
337 COG4912 Predicted DNA alkylati 64.0 42 0.00092 32.5 8.3 84 361-450 102-186 (222)
338 cd00864 PI3Ka Phosphoinositide 63.2 57 0.0012 30.0 8.9 81 20-116 37-118 (152)
339 cd00870 PI3Ka_III Phosphoinosi 63.0 35 0.00077 31.9 7.6 80 21-116 45-125 (166)
340 cd00197 VHS_ENTH_ANTH VHS, ENT 62.9 1E+02 0.0022 26.7 10.9 74 415-488 34-113 (115)
341 KOG1837 Uncharacterized conser 62.5 4.5E+02 0.0097 33.9 37.3 101 477-587 1520-1620(1621)
342 KOG3678 SARM protein (with ste 62.2 2.4E+02 0.0051 30.7 15.7 120 6-135 161-295 (832)
343 KOG1848 Uncharacterized conser 61.9 4.3E+02 0.0094 33.6 25.0 160 778-955 1007-1189(1610)
344 PF11919 DUF3437: Domain of un 61.8 24 0.00051 28.9 5.4 60 898-958 5-64 (90)
345 PF12397 U3snoRNP10: U3 small 61.4 53 0.0011 28.8 8.2 74 414-492 2-76 (121)
346 COG5098 Chromosome condensatio 61.4 3.1E+02 0.0067 31.7 49.7 725 94-999 290-1094(1128)
347 PF14631 FancD2: Fanconi anaem 60.5 91 0.002 40.5 12.9 121 407-534 424-544 (1426)
348 PF11935 DUF3453: Domain of un 59.4 2E+02 0.0044 29.0 15.3 94 181-275 40-160 (239)
349 PF08146 BP28CT: BP28CT (NUC21 58.9 50 0.0011 30.4 7.8 83 563-645 36-119 (153)
350 KOG2011 Sister chromatid cohes 58.0 1E+02 0.0022 37.7 11.8 129 394-526 262-393 (1048)
351 smart00145 PI3Ka Phosphoinosit 57.0 81 0.0018 30.1 9.0 80 20-115 42-122 (184)
352 KOG0929 Guanine nucleotide exc 57.0 5.6E+02 0.012 33.3 18.2 247 387-644 1047-1321(1514)
353 cd03565 VHS_Tom1 VHS domain fa 56.8 1.5E+02 0.0033 26.8 12.2 95 500-595 35-133 (141)
354 PF14868 DUF4487: Domain of un 56.5 3.7E+02 0.0079 31.0 25.5 71 119-190 243-314 (559)
355 PF11707 Npa1: Ribosome 60S bi 56.0 2.8E+02 0.0061 29.6 15.5 154 145-303 58-237 (330)
356 cd00869 PI3Ka_II Phosphoinosit 55.4 94 0.002 29.1 8.8 14 70-83 84-97 (169)
357 PF14961 BROMI: Broad-minded p 55.1 1.9E+02 0.0041 36.0 13.2 135 145-283 163-316 (1296)
358 PF11707 Npa1: Ribosome 60S bi 54.8 3E+02 0.0064 29.5 21.7 72 233-304 58-144 (330)
359 KOG3687 Tuberin - Rap/ran-GTPa 54.5 4.7E+02 0.01 31.7 24.0 469 37-549 42-560 (1697)
360 KOG1789 Endocytosis protein RM 53.9 5.1E+02 0.011 31.9 24.3 98 159-262 1741-1843(2235)
361 PF03542 Tuberin: Tuberin; In 53.6 3.2E+02 0.0069 29.5 18.7 118 198-331 210-329 (356)
362 PF14668 RICTOR_V: Rapamycin-i 53.1 39 0.00085 26.3 5.1 54 435-491 4-59 (73)
363 KOG2199 Signal transducing ada 52.0 1.9E+02 0.0042 30.7 11.1 78 374-451 42-122 (462)
364 PF00613 PI3Ka: Phosphoinositi 51.8 36 0.00078 32.5 5.8 80 20-115 43-123 (184)
365 PF12612 TFCD_C: Tubulin foldi 50.9 2.4E+02 0.0052 27.3 14.7 154 99-261 3-159 (193)
366 PF12612 TFCD_C: Tubulin foldi 50.8 2.4E+02 0.0052 27.3 12.9 133 415-555 4-138 (193)
367 COG5231 VMA13 Vacuolar H+-ATPa 50.3 3.1E+02 0.0068 28.4 21.3 71 418-490 356-428 (432)
368 KOG2038 CAATT-binding transcri 50.3 4.9E+02 0.011 30.7 30.6 109 181-303 301-409 (988)
369 PF08569 Mo25: Mo25-like; Int 49.7 3.5E+02 0.0077 28.9 29.3 108 385-493 172-286 (335)
370 cd03562 CID CID (CTD-Interacti 48.0 1.3E+02 0.0028 26.0 8.4 81 430-521 17-97 (114)
371 COG5209 RCD1 Uncharacterized p 47.8 47 0.001 32.0 5.6 95 859-953 119-219 (315)
372 KOG1087 Cytosolic sorting prot 46.8 2.8E+02 0.0061 31.0 12.3 112 384-505 12-125 (470)
373 KOG3678 SARM protein (with ste 46.7 2E+02 0.0043 31.2 10.5 136 855-999 197-336 (832)
374 KOG2038 CAATT-binding transcri 46.3 5.6E+02 0.012 30.2 25.9 74 229-311 302-375 (988)
375 KOG2153 Protein involved in th 45.9 4.7E+02 0.01 30.2 13.5 87 437-530 304-390 (704)
376 PF10193 Telomere_reg-2: Telom 45.6 95 0.0021 26.9 6.9 69 925-995 5-78 (114)
377 smart00567 EZ_HEAT E-Z type HE 45.5 27 0.00059 21.3 2.7 14 391-404 1-14 (30)
378 PF12726 SEN1_N: SEN1 N termin 45.5 6.4E+02 0.014 30.6 42.3 150 57-217 78-246 (727)
379 PF01465 GRIP: GRIP domain; I 44.8 52 0.0011 22.9 4.2 34 100-134 4-37 (46)
380 PF03130 HEAT_PBS: PBS lyase H 44.6 16 0.00034 21.9 1.4 14 434-447 1-14 (27)
381 PF12243 CTK3: CTD kinase subu 42.6 1.2E+02 0.0027 27.2 7.3 80 421-511 11-92 (139)
382 PF14911 MMS22L_C: S-phase gen 42.2 4.8E+02 0.01 28.2 22.0 111 859-972 230-349 (373)
383 COG5369 Uncharacterized conser 42.2 1.5E+02 0.0032 33.1 8.9 119 142-261 472-595 (743)
384 KOG1087 Cytosolic sorting prot 42.1 2E+02 0.0044 32.1 10.3 94 501-596 36-132 (470)
385 KOG4199 Uncharacterized conser 39.2 4.8E+02 0.01 27.4 32.0 111 416-530 330-442 (461)
386 PF10350 DUF2428: Putative dea 39.1 4.4E+02 0.0095 26.9 15.4 143 803-974 89-250 (255)
387 smart00582 RPR domain present 39.0 1.2E+02 0.0026 26.5 6.9 98 420-528 2-103 (121)
388 cd07064 AlkD_like_1 A new stru 38.8 1.6E+02 0.0036 28.8 8.4 67 378-451 116-183 (208)
389 cd00870 PI3Ka_III Phosphoinosi 37.4 3.5E+02 0.0077 25.3 10.5 84 48-155 40-124 (166)
390 PF14228 MOR2-PAG1_mid: Cell m 37.1 9.9E+02 0.022 30.5 23.2 69 419-490 504-572 (1120)
391 PF14838 INTS5_C: Integrator c 37.0 7.7E+02 0.017 29.2 24.8 91 181-276 311-405 (696)
392 PF14764 SPG48: AP-5 complex s 35.9 6.6E+02 0.014 28.0 33.2 76 415-491 259-340 (459)
393 PLN03205 ATR interacting prote 35.5 5.8E+02 0.013 27.3 17.7 135 122-258 302-444 (652)
394 PF10350 DUF2428: Putative dea 35.2 5E+02 0.011 26.5 13.7 158 391-551 61-247 (255)
395 PF14676 FANCI_S2: FANCI solen 34.8 3.8E+02 0.0082 24.9 10.1 49 76-134 37-85 (158)
396 PF14631 FancD2: Fanconi anaem 33.4 1.3E+03 0.028 30.6 30.6 121 361-489 421-541 (1426)
397 PF03542 Tuberin: Tuberin; In 33.3 6.5E+02 0.014 27.2 18.9 168 103-281 141-328 (356)
398 KOG3613 Dopey and related pred 32.5 7.9E+02 0.017 32.3 14.1 240 245-489 1346-1620(1749)
399 KOG2059 Ras GTPase-activating 32.3 2E+02 0.0042 33.3 8.3 84 356-440 360-443 (800)
400 KOG1222 Kinesin associated pro 32.3 7.3E+02 0.016 27.5 25.8 96 159-260 279-374 (791)
401 cd04377 RhoGAP_myosin_IX RhoGA 32.2 2.6E+02 0.0055 26.9 8.4 94 904-1006 72-165 (186)
402 PF07539 DRIM: Down-regulated 31.7 1.9E+02 0.0042 26.2 6.9 81 417-512 16-97 (141)
403 COG5537 IRR1 Cohesin [Cell div 30.5 8.8E+02 0.019 27.9 14.6 103 385-490 283-386 (740)
404 PF09759 Atx10homo_assoc: Spin 30.2 2E+02 0.0042 24.4 6.1 57 435-493 3-62 (102)
405 PF12243 CTK3: CTD kinase subu 30.1 4.2E+02 0.009 24.0 11.2 80 462-552 10-92 (139)
406 KOG2999 Regulator of Rac1, req 30.1 8.6E+02 0.019 27.6 15.3 151 23-177 84-247 (713)
407 cd00871 PI4Ka Phosphoinositide 30.0 4E+02 0.0087 25.2 8.8 65 38-118 54-120 (175)
408 PF14222 MOR2-PAG1_N: Cell mor 29.5 9.5E+02 0.021 27.9 29.1 155 107-266 133-308 (552)
409 PF01417 ENTH: ENTH domain; I 29.0 4E+02 0.0087 23.4 9.9 91 356-446 18-120 (125)
410 smart00755 Grip golgin-97, Ran 28.8 1.1E+02 0.0024 21.3 3.7 32 101-134 4-35 (46)
411 COG1698 Uncharacterized protei 28.7 2.4E+02 0.0051 22.9 5.8 35 17-51 8-48 (93)
412 PF06371 Drf_GBD: Diaphanous G 27.9 4.1E+02 0.009 25.3 9.3 60 429-489 127-186 (187)
413 cd07064 AlkD_like_1 A new stru 27.6 5.9E+02 0.013 24.9 18.5 157 33-215 23-180 (208)
414 cd04381 RhoGap_RalBP1 RhoGap_R 27.4 2.8E+02 0.0061 26.5 7.7 88 902-998 74-161 (182)
415 PF14868 DUF4487: Domain of un 27.0 1E+03 0.022 27.5 26.1 75 881-955 479-555 (559)
416 KOG1086 Cytosolic sorting prot 26.4 8.7E+02 0.019 26.4 14.1 67 151-217 53-126 (594)
417 PF04869 Uso1_p115_head: Uso1 26.2 6.3E+02 0.014 26.7 10.5 55 499-553 151-208 (312)
418 PF05327 RRN3: RNA polymerase 25.9 1.1E+03 0.024 27.5 16.7 20 474-493 361-380 (563)
419 PF08620 RPAP1_C: RPAP1-like, 25.6 1.3E+02 0.0029 23.5 4.0 32 144-175 40-71 (73)
420 cd04379 RhoGAP_SYD1 RhoGAP_SYD 25.6 2.7E+02 0.0059 27.3 7.4 97 902-1004 76-172 (207)
421 PF14961 BROMI: Broad-minded p 25.3 2E+02 0.0044 35.7 7.4 72 106-177 164-236 (1296)
422 PF11841 DUF3361: Domain of un 24.6 5.7E+02 0.012 23.7 13.6 77 183-264 57-135 (160)
423 PF09759 Atx10homo_assoc: Spin 24.0 2.4E+02 0.0053 23.8 5.6 56 394-450 3-62 (102)
424 PF14228 MOR2-PAG1_mid: Cell m 23.4 1.6E+03 0.036 28.6 16.5 53 249-303 934-986 (1120)
425 PF01417 ENTH: ENTH domain; I 23.4 5.1E+02 0.011 22.7 9.3 67 905-973 23-92 (125)
426 cd04374 RhoGAP_Graf RhoGAP_Gra 23.3 3.3E+02 0.0071 26.6 7.4 91 902-1001 89-179 (203)
427 cd04384 RhoGAP_CdGAP RhoGAP_Cd 23.1 3.5E+02 0.0075 26.2 7.5 93 902-1003 75-167 (195)
428 PF05997 Nop52: Nucleolar prot 22.5 2.9E+02 0.0063 27.3 6.9 89 422-510 4-93 (217)
429 KOG3723 PH domain protein Melt 22.4 1.2E+03 0.025 26.6 15.7 213 402-635 18-276 (851)
430 KOG4646 Uncharacterized conser 22.3 5.7E+02 0.012 22.9 11.4 97 389-491 29-129 (173)
431 cd06561 AlkD_like A new struct 21.5 7.3E+02 0.016 23.8 15.7 72 463-541 108-179 (197)
432 KOG4199 Uncharacterized conser 21.3 9.9E+02 0.021 25.3 28.0 129 420-552 285-423 (461)
433 PF08324 PUL: PUL domain; Int 21.1 4.5E+02 0.0097 27.0 8.5 101 389-489 122-230 (268)
434 cd04406 RhoGAP_myosin_IXA RhoG 21.0 3.9E+02 0.0085 25.6 7.4 99 903-1010 71-170 (186)
435 PF13925 Katanin_con80: con80 20.1 3.1E+02 0.0066 25.7 6.3 54 124-178 46-104 (164)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-112 Score=938.12 Aligned_cols=969 Identities=47% Similarity=0.777 Sum_probs=886.7
Q ss_pred CChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
||...|.++++.+.+||+++|++||+.|+....+.| ....|.+++.+++++++|++|++++|+++.+. |+.++.
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~----w~~l~~ 74 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH----WSRLSA 74 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH----hhcCCH
Confidence 578899999999999999999999999997665334 67899999988999999999999999999986 999999
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc
Q 001791 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1012)
+.++.||+.++..+.+|+.+.||+.+|++++.+++.+++. .||+++++|++..+++++..|+.|+.+|..+.+.+++.+
T Consensus 75 e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 75 EVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 9999999999999999999999999999999999999996 999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhc-CcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001791 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-SSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIE 257 (1012)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~ 257 (1012)
.+++..+.++|.+++.++ +..||..|+++++.++...+ +......|..++|.++..+...+++++.+....++++|.+
T Consensus 154 ~~~~~~l~~lf~q~~~d~-s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~E 232 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDP-SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIE 232 (1075)
T ss_pred chhHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHH
Confidence 999999999999999998 55599999999999999885 4456778899999999999999999898999999999999
Q ss_pred HHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCc
Q 001791 258 LAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1012)
Q Consensus 258 l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1012)
+++..|+.+.+++.+++++++++..+++.++.+|..|++++.++++ +.|.+.++.+++...+++.++.++.+..+|+
T Consensus 233 l~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e---~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 233 LLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE---YAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH---hhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 9999999999999999999999999999999999999999999999 4888888888999999999999999998889
Q ss_pred cccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001791 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1012)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1012)
+|...++.|+|+ +.+++..|.+++++++.++|++.++|.+++.+..++.|++|+.|+||+.+++.+++||.+.+.++++
T Consensus 310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999877655554 5678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccc
Q 001791 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1012)
+|++.++++++|++|+||.+|+.++|+++..+.+.+...+.+.+.|.++..+.+..+++|+.+|+.++-++.+.+.++.+
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999977777777888999998877889999999999999999999999
Q ss_pred cCcHHHHHH-HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 001791 498 TPYLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1012)
Q Consensus 498 ~~~~~~il~-~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1012)
.||++.+++ .+.-++++..+.+++.+..+|++++.+.++.|.||++.+||.|...+++..+++.+.+|++.++|++.++
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 999999999 5555667777999999999999999999999999999999999999999887889999999999999999
Q ss_pred hhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCC
Q 001791 577 MAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADS 656 (1012)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~ 656 (1012)
.++|++.|.|+..++++.+..++.+..+.+++.+++.+.+|+++|+.+|++|.||++.+||.+++....+|+....++
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~-- 626 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDE-- 626 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCc--
Confidence 999999999999999999999877677788899999999999999999999999999999999999999887765532
Q ss_pred CccccCCCCcccchhhcCCc-eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHH
Q 001791 657 DNEIEDSDDDSMETITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVS 735 (1012)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~ 735 (1012)
+++.+..++++|++...+|+ .++++|+.+++|..||..|+.++..++..|.||++++++..++.+..+++++||++|+.
T Consensus 627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~ 706 (1075)
T KOG2171|consen 627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAE 706 (1075)
T ss_pred hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 22222335666777777777 89999999999999999999999999999999999999977777888899999999999
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Q 001791 736 AMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP-LLDEGQVRSIVDE 814 (1012)
Q Consensus 736 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~~~~~~ 814 (1012)
+++.+++....++.+| +.++.++...+.|.++..+..+++++++..++++++++++.+|+ ++.+++...+...
T Consensus 707 ~~p~ll~~~~~A~~~~------p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~ 780 (1075)
T KOG2171|consen 707 SMPQLLTCALKACQGG------PEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGG 780 (1075)
T ss_pred HHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHH
Confidence 9999999987776443 56899999999999999999999999999999999999999997 4888999999988
Q ss_pred HHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCC
Q 001791 815 IKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK 894 (1012)
Q Consensus 815 l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~ 894 (1012)
+...+....++.+.+......||+|.++.+.. .|.+..+.+.+.+.+..+++.+++.|.|+|.+++|.+..++.+++
T Consensus 781 ~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~---~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~ 857 (1075)
T KOG2171|consen 781 LLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDL---DEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKK 857 (1075)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH---hhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCC
Confidence 88888887777666643333333333222222 267778999999999999999999999999999999999997666
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhc
Q 001791 895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 974 (1012)
Q Consensus 895 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~ 974 (1012)
... |..++++++++++.+++...+|.+.++|.++..+.|.+++||++|++++|.++++.+..+.+.....++.|..++.
T Consensus 858 ~~~-r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq 936 (1075)
T KOG2171|consen 858 TVA-RQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQ 936 (1075)
T ss_pred cHH-HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHc
Confidence 666 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHhHccCCCChhhhc
Q 001791 975 HPNALQPENLMAYDNAVSALGKICQFHRDSIDAAQVL 1011 (1012)
Q Consensus 975 ~~~~~~~~~~~~~~na~~~~~~l~~~~p~~~~~~~~~ 1011 (1012)
.+..+.+.+...++||++||+||+.++|..+|++||+
T Consensus 937 ~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl 973 (1075)
T KOG2171|consen 937 PPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVL 973 (1075)
T ss_pred ChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHH
Confidence 9998888899999999999999999999999999986
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-64 Score=516.38 Aligned_cols=766 Identities=22% Similarity=0.301 Sum_probs=613.4
Q ss_pred hCCCh---hHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCC
Q 001791 17 LGPDS---APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSF 91 (1012)
Q Consensus 17 ~~~~~---~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~ 91 (1012)
|.++. +++.++|++.+|||+++|+.+...|.++.. .|+ |..+|+.+|.. +.+..+|.+|+.+|||.++.+
T Consensus 5 w~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pd-fnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~--- 79 (885)
T KOG2023|consen 5 WQPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPD-FNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGH--- 79 (885)
T ss_pred CcccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccc-hhceeeEEEecccccchhHHHHhhhhHhcccccc---
Confidence 56654 466777888999999999999999999999 787 45899999875 778889999999999999998
Q ss_pred cccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001791 92 LWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1012)
Q Consensus 92 ~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1012)
|..++++.+.++|+.+++.+.+ +++.+|...+.++.+|+....- ..||+++|.|.+++.+++.+..++|+.+|..+|
T Consensus 80 -~~~~~~~~~~yiKs~~l~~lgd-~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIc 156 (885)
T KOG2023|consen 80 -YNSIPSEVLDYIKSECLHGLGD-ASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKIC 156 (885)
T ss_pred -ccCCChHHHHHHHHHHHhhccC-chHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 9999999999999999999997 8889999999999999986543 699999999999999999999999999999999
Q ss_pred hhHhhhc-----cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChH
Q 001791 172 QYIGDTL-----TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1012)
Q Consensus 172 ~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 246 (1012)
+...+.+ ..-++.++|.++++.+++ ++.+|..|+.|+..++-.. ...+...+..+++.++...++++++
T Consensus 157 EDsa~~lds~~~~rpl~~mipkfl~f~~h~-spkiRs~A~~cvNq~i~~~-----~qal~~~iD~Fle~lFalanD~~~e 230 (885)
T KOG2023|consen 157 EDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVNQFIIIQ-----TQALYVHIDKFLEILFALANDEDPE 230 (885)
T ss_pred hhhHHHHhhhcccCchHHhHHHHHHHHhCC-ChhHHHHHHhhhhheeecC-----cHHHHHHHHHHHHHHHHHccCCCHH
Confidence 9866433 235788999999999998 9999999999999988653 4455666778999999988999999
Q ss_pred HHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHH
Q 001791 247 TAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAIL 326 (1012)
Q Consensus 247 ~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l 326 (1012)
+|...+..|.-+.+..++.+.||++.|++++++.. .+.++.+...|++||.++++. |--...+.+|+.+++|.+
T Consensus 231 VRk~vC~alv~Llevr~dkl~phl~~IveyML~~t--qd~dE~VALEACEFwla~aeq----pi~~~~L~p~l~kliPvL 304 (885)
T KOG2023|consen 231 VRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRT--QDVDENVALEACEFWLALAEQ----PICKEVLQPYLDKLIPVL 304 (885)
T ss_pred HHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHc--cCcchhHHHHHHHHHHHHhcC----cCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 455778999999999999994 322235789999999999
Q ss_pred HHhhccCCCCcccc----------------------------------CCCCCCc--ccc---CCcchhhHHHHHHHHHH
Q 001791 327 MSMLLDIEDDPLWH----------------------------------SAETEDE--DAG---ESSNYSVGQECLDRLAI 367 (1012)
Q Consensus 327 ~~~l~~~~~~~~~~----------------------------------~~~~~~e--d~~---~~~~~~~a~~~l~~l~~ 367 (1012)
+..|.+.++|.... ++++||+ |++ +|..|+++...++.++.
T Consensus 305 l~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan 384 (885)
T KOG2023|consen 305 LSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN 384 (885)
T ss_pred HccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH
Confidence 99998764331000 0011111 111 35667888999999999
Q ss_pred HcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001791 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1012)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1012)
.+| +++++.++|.+.+.+.+.+|.+|+++++++|.+++||.+.+.+|++.++|+++++|.|+.|.||..+||+|++++.
T Consensus 385 vf~-~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 385 VFG-DELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred hhH-HHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 998 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001791 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1012)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l 527 (1012)
+.-..-..+|+..++..+++.+-| ++.+||++||+++..+-+..+++ +.||+..|+..+...++.-..+-..-...++
T Consensus 464 wv~~~~~~~~f~pvL~~ll~~llD-~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ~KNLlILYDAI 541 (885)
T KOG2023|consen 464 WVVQDSRDEYFKPVLEGLLRRLLD-SNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQKKNLLILYDAI 541 (885)
T ss_pred hHhcCChHhhhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHhhcceehHHHHH
Confidence 986555467899999999999989 89999999999999999999855 7799999999999988765544444578999
Q ss_pred HHHHHHhHhhhH--hhHhhhhHHHHHHHhhccc--cccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCC
Q 001791 528 ASVADSSQEHFQ--KYYDAVMPFLKAILVNATD--KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQM 603 (1012)
Q Consensus 528 ~~l~~~~~~~~~--~~~~~il~~l~~~l~~~~~--~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 603 (1012)
|.++..+|..+. .|.+.+||+|++.|..-.+ ++..++ ++|++.++.++| +.|.||+.++++--.++..
T Consensus 542 gtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~-~gF~P~~~~Vy~Rc~~il~--- 613 (885)
T KOG2023|consen 542 GTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALG-VGFLPYAQPVYQRCFRILQ--- 613 (885)
T ss_pred HHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHh-ccccccCHHHHHHHHHHHH---
Confidence 999999998765 4899999999999876433 233444 889999999999 7799998776653332110
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecch
Q 001791 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTS 683 (1012)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1012)
++...+ .....++... -. ++.+-
T Consensus 614 -----------~t~q~~--------------------~~~~~~~~~~--------------~p--------dkdfi---- 636 (885)
T KOG2023|consen 614 -----------KTLQLL--------------------AKVQQDPTVE--------------AP--------DKDFI---- 636 (885)
T ss_pred -----------HHHHHH--------------------HhccCCcccc--------------CC--------CcceE----
Confidence 011111 1111111111 00 11111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccccHH--HHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHH
Q 001791 684 VLEEKATACNMLCCYADELKEGFFPWID--QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYV 761 (1012)
Q Consensus 684 ~~~~k~~a~~~l~~i~~~~~~~~~p~~~--~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 761 (1012)
..|+..++.+++.+|..+.|.+. .+++.+..++.+. -++||++|...||++.++| ++.+
T Consensus 637 -----I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~-~peVRQS~FALLGDltk~c-------------~~~v 697 (885)
T KOG2023|consen 637 -----IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDE-VPEVRQSAFALLGDLTKAC-------------FEHV 697 (885)
T ss_pred -----EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHH-------------HHhc
Confidence 34677899999998887766543 3667777777764 7899999999999999997 3555
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHH
Q 001791 762 KQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAE 841 (1012)
Q Consensus 762 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~ 841 (1012)
......++|.+-..+.. ....++.+++.+++++....|..+ ..++..++..+..+++...
T Consensus 698 ~p~~~~fl~~lg~Nl~~-~~isv~nNA~WAiGeia~k~g~~~-~~~v~~vl~~L~~iin~~~------------------ 757 (885)
T KOG2023|consen 698 IPNLADFLPILGANLNP-ENISVCNNAIWAIGEIALKMGLKM-KQYVSPVLEDLITIINRQN------------------ 757 (885)
T ss_pred cchHHHHHHHHhhcCCh-hhchHHHHHHHHHHHHHHHhchhh-hhHHHHHHHHHHHHhcccC------------------
Confidence 66667777776644432 355677888999999998888753 3456666666665554311
Q ss_pred HhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHh
Q 001791 842 ESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK 919 (1012)
Q Consensus 842 ~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 919 (1012)
....+.++.+-.+|.+...+|+.+.|+++.++..-+..++.-.+.++|.+|+.-+..++..-+..+..
T Consensus 758 ----------~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~ 825 (885)
T KOG2023|consen 758 ----------TPKTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVS 825 (885)
T ss_pred ----------chHHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhh
Confidence 23457778999999999999999999999977666666655567788999999999988876665443
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-59 Score=489.86 Aligned_cols=764 Identities=20% Similarity=0.316 Sum_probs=610.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------CCccc
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~-------~~~w~ 94 (1012)
++.++|+.+.|||.++|++|+++|++++.+|...|+..|.++|.+ +.+...|..|++.|||.+..++ ...|-
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 466788889999999999999999999998989999999999987 6789999999999999998874 34699
Q ss_pred CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCH-HHHHHHHHHHHHhhhh
Q 001791 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQY 173 (1012)
Q Consensus 95 ~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~-~~r~~al~~l~~l~~~ 173 (1012)
.++.+.++++|+.++..|++ +.+.....++++++.|+..++|.+.||++++.+.....++.+ .+|++++.++|++|++
T Consensus 82 ~l~~e~reqVK~~il~tL~~-~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~ 160 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGS-PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICED 160 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCC-CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHcc
Confidence 99999999999999999997 889999999999999999999999999999999999887665 4999999999999999
Q ss_pred Hhhh-ccccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHH
Q 001791 174 IGDT-LTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1012)
Q Consensus 174 ~~~~-~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 251 (1012)
+.++ +....+.++..+.+++... ++..||.+|++||...+++....+..+.- ...+++..++..++++.+++..+
T Consensus 161 i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~e---rn~iMqvvcEatq~~d~~i~~aa 237 (859)
T KOG1241|consen 161 IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEME---RNYIMQVVCEATQSPDEEIQVAA 237 (859)
T ss_pred CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhh---hceeeeeeeecccCCcHHHHHHH
Confidence 7544 4556788888888877655 68899999999999999875432222222 23688899999999999999999
Q ss_pred HHHHHHHHccchHHHHHhHHH-HHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhh-----ccchhhhcch--------h
Q 001791 252 LELLIELAGTEPRFLRRQLVD-VVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-----RAPGMMRKLP--------Q 317 (1012)
Q Consensus 252 ~~~L~~l~~~~~~~~~~~~~~-i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~~~~--------~ 317 (1012)
+.||.++...|++++.+|+.+ ++...+..+. +.++++..+++++|+++|+.+- +....-+..+ .
T Consensus 238 ~~ClvkIm~LyY~~m~~yM~~alfaitl~amk--s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 238 FQCLVKIMSLYYEFMEPYMEQALFAITLAAMK--SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999999999999999999987 8888877774 5689999999999999998631 1110001111 2
Q ss_pred hHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHH
Q 001791 318 FINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1012)
Q Consensus 318 ~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aa 397 (1012)
.++.++|.+++.+...+++ +|+|+|++.++|+.||..++..+| ++++++++|++.+.+++++|+.|++|
T Consensus 316 a~~~v~P~Ll~~L~kqde~----------~d~DdWnp~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~~pdwr~reaa 384 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDED----------DDDDDWNPAKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQNPDWRNREAA 384 (859)
T ss_pred HHhHhhHHHHHHHHhCCCC----------cccccCcHHHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcCCcchhhhhHH
Confidence 3456899999988875432 234579999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCCh
Q 001791 398 LIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNP 475 (1012)
Q Consensus 398 l~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~ 475 (1012)
..++|++.++.. ....+..++.+|.++..+.|++-.||.++.|++|++++.++... ...++..+++.++..++| .|
T Consensus 385 vmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--eP 462 (859)
T KOG1241|consen 385 VMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EP 462 (859)
T ss_pred HHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--Cc
Confidence 999999999865 45667888899999999999999999999999999999886443 235788999999999998 89
Q ss_pred HHHHHHHHHHHHHhhcCC--------cccccCcHHHHHHHHHHHhhcC---ChhHHHHHHHHHHHHHHHhHhhhHhhHhh
Q 001791 476 RVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQEHFQKYYDA 544 (1012)
Q Consensus 476 ~v~~~a~~al~~l~~~~~--------~~~l~~~~~~il~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 544 (1012)
+|...+|+++..|.+++. .+...|+++.|+..|+...+.. ....|..++++|+.++....+...+-+..
T Consensus 463 rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~ 542 (859)
T KOG1241|consen 463 RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQK 542 (859)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999996542 1234578999999999887663 46899999999999999988776554443
Q ss_pred ----hhHHHHHHHhh-----ccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 001791 545 ----VMPFLKAILVN-----ATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1012)
Q Consensus 545 ----il~~l~~~l~~-----~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1012)
++..|.+.++. ....+...+..-.+.+++.+.+.+++ .+.++.+.+|..++++.++ ..+..+.+.++-
T Consensus 543 ~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~lflri~~s--~~s~~v~e~a~l 619 (859)
T KOG1241|consen 543 LTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGLFLRIFES--KRSAVVHEEAFL 619 (859)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHHHcC--CccccchHHHHH
Confidence 34444444431 11123456777788899999999995 7999999999999997764 233456777888
Q ss_pred HHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHH
Q 001791 616 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (1012)
Q Consensus 616 ~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l 695 (1012)
+.+.++..+|..|..|.|.+.|.|...++...+ . .+-.+|..+.
T Consensus 620 aV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e-----------------~-------------------qVc~~aVglV 663 (859)
T KOG1241|consen 620 AVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE-----------------Y-------------------QVCAAAVGLV 663 (859)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH-----------------H-------------------HHHHHHHHHH
Confidence 999999999999999999999999999843110 0 1125678889
Q ss_pred HHHHHHhhhcccccHHHHHHHhccccCc-cCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q 001791 696 CCYADELKEGFFPWIDQVAPTLVPLLKF-YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 774 (1012)
Q Consensus 696 ~~i~~~~~~~~~p~~~~~~~~l~~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 774 (1012)
|.+++.++..|.||...++..++..++. ..+.+++-....++|+++-..+ ..+.++++.++|.+.+
T Consensus 664 gdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg-------------~~F~~Yl~~vm~llq~ 730 (859)
T KOG1241|consen 664 GDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIG-------------ADFEPYLEMVMPLLQQ 730 (859)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865 2466788888999999988762 3355667777777666
Q ss_pred HHh--cCC----c----HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhh
Q 001791 775 ALH--KEP----D----TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESE 844 (1012)
Q Consensus 775 ~~~--~~~----~----~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~ 844 (1012)
+-. .++ . .+.|..++++..-+++..+.......+.++++.+...+..... +++
T Consensus 731 as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~----------e~~------- 793 (859)
T KOG1241|consen 731 ASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAA----------EPD------- 793 (859)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhc----------Ccc-------
Confidence 542 121 1 2456666777777777666443445566677777777666421 111
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH
Q 001791 845 LIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE 881 (1012)
Q Consensus 845 ~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 881 (1012)
.++.+...++.++|.|+..+|++..+++..
T Consensus 794 -------~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~ 823 (859)
T KOG1241|consen 794 -------VSEALHAAALGLIGDLATMFGKGVIKLFLD 823 (859)
T ss_pred -------cchHHHHHHHHHHHHHHHHcccchhhhhcc
Confidence 334677789999999999999887655443
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.3e-47 Score=382.94 Aligned_cols=705 Identities=16% Similarity=0.219 Sum_probs=527.4
Q ss_pred CChhHHHHHHHH-hcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCC-------
Q 001791 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDD------- 89 (1012)
Q Consensus 19 ~~~~~l~~ll~~-~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~------- 89 (1012)
|...++..+.++ .+|||++.|..||++|.+++..+...|+..+.+.+.+ +.++..|..|++.|||-+..++
T Consensus 1 M~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 1 MKKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred CchHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 445567777776 6899999999999999999998888899999999987 7789999999999999988764
Q ss_pred CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCH-HHHHHHHHHHH
Q 001791 90 SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSV-KLQESAFLIFA 168 (1012)
Q Consensus 90 ~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~-~~r~~al~~l~ 168 (1012)
...|-.+++|.++++|...++.|++ +.+..-+.+++.++.|++.++|.+.||+++..+.....++.+ ..+..++.+++
T Consensus 81 ~qrW~~~~~E~k~qvK~~al~aL~s-~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 81 SQRWLGMRHESKEQVKGMALRALKS-PEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHhhccCCHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 3569999999999999999999997 899999999999999999999999999999999998877654 67888999999
Q ss_pred HhhhhHhh-hccccHHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChH
Q 001791 169 QLSQYIGD-TLTPHLKH-LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1012)
Q Consensus 169 ~l~~~~~~-~~~~~~~~-l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 246 (1012)
+.|+...+ .+....+. ++.++...++.+++..+|.+|++||..-..+....+..+ .-...+++..++..+.++.+
T Consensus 160 y~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E---~erNy~mqvvceatq~~d~e 236 (858)
T COG5215 160 YHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE---EERNYFMQVVCEATQGNDEE 236 (858)
T ss_pred HHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch---hhhchhheeeehhccCCcHH
Confidence 99998544 44443444 445666667776789999999999998655543222222 22347889999999999999
Q ss_pred HHHHHHHHHHHHHccchHHHHHhHHHHH-HHHHHhhccCCcchHHHHHHHHHHHHHHHhh-------hccchhhhcch--
Q 001791 247 TAQEALELLIELAGTEPRFLRRQLVDVV-GSMLQIAEAESLEEGTRHLAIEFVITLAEAR-------ERAPGMMRKLP-- 316 (1012)
Q Consensus 247 ~~~~~~~~L~~l~~~~~~~~~~~~~~i~-~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~-------~~~~~~~~~~~-- 316 (1012)
+...++.||.++...|++++.+|+...+ ..+.+.+ ++.++++..++.++|+.+|+.+ .+.|+...+..
T Consensus 237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m--ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM--KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 9999999999999999999999987644 4444444 4568999999999999999864 12221111111
Q ss_pred --hhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHH
Q 001791 317 --QFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1012)
Q Consensus 317 --~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r 394 (1012)
..+..++|.++.++....+| .++++|++..+|..||..+++..| +.+...++.++.+.+.+++|..|
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed----------~~~DdWn~smaA~sCLqlfaq~~g-d~i~~pVl~FvEqni~~~~w~nr 383 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGED----------YYGDDWNPSMAASSCLQLFAQLKG-DKIMRPVLGFVEQNIRSESWANR 383 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC----------ccccccchhhhHHHHHHHHHHHhh-hHhHHHHHHHHHHhccCchhhhH
Confidence 13566899999998875433 234478888999999999999998 78888899999999999999999
Q ss_pred HHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH-hhhhhhhHHHHHhhcCCC
Q 001791 395 HAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ-NQFHPQVLPALAGAMDDF 472 (1012)
Q Consensus 395 ~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~il~~l~~~l~~~ 472 (1012)
++|..++|++.++..+ ...+++++.+|.+....+|+.-.|+..+.||+|+++.+....+. ..++...+...+-.+.|
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D- 462 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD- 462 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-
Confidence 9999999999988655 45577889999999999999999999999999999988754431 23666677777777777
Q ss_pred CChHHHHHHHHHHHHHhhcCCc------ccccCcHHHHHHHHHHHh----------------------------------
Q 001791 473 QNPRVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVLL---------------------------------- 512 (1012)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~~------~~l~~~~~~il~~l~~~l---------------------------------- 512 (1012)
+|.+...+++...+++.++.+ +.+.++++.|+..|+...
T Consensus 463 -~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~ 541 (858)
T COG5215 463 -CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG 541 (858)
T ss_pred -cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 677777777777777765532 234455555555554432
Q ss_pred -----------------------------------------------------------------hcC-ChhHHHHHHHH
Q 001791 513 -----------------------------------------------------------------QNG-KQMVQEGALTA 526 (1012)
Q Consensus 513 -----------------------------------------------------------------~~~-~~~v~~~a~~~ 526 (1012)
++. ...+-...+.+
T Consensus 542 ~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~a 621 (858)
T COG5215 542 FYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTA 621 (858)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHH
Confidence 111 22344567778
Q ss_pred HHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCC
Q 001791 527 LASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETD 606 (1012)
Q Consensus 527 l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~ 606 (1012)
++.+....++.|..|.+.++|++...+.. .+..+-..++..++.++.++| ..|.+|.+.++..|.+...+. ..+
T Consensus 622 Isal~~sl~e~Fe~y~~~fiPyl~~aln~----~d~~v~~~avglvgdlantl~-~df~~y~d~~ms~LvQ~lss~-~~~ 695 (858)
T COG5215 622 ISALSTSLEERFEQYASKFIPYLTRALNC----TDRFVLNSAVGLVGDLANTLG-TDFNIYADVLMSSLVQCLSSE-ATH 695 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcc----hhHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCh-hhc
Confidence 88888888999999999999999998832 345577778999999999999 779999999999999854432 134
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHH
Q 001791 607 DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLE 686 (1012)
Q Consensus 607 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 686 (1012)
+.+++.++.+|+.++...|..|.+|+..++-.+.+.-+.+|... +-+..+|. ..++..
T Consensus 696 R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~-------------~~~~~dy~------~~~~~~--- 753 (858)
T COG5215 696 RDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD-------------EVYVDDYR------KNAVQL--- 753 (858)
T ss_pred cccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC-------------ceeHHHHH------HHHHHH---
Confidence 56899999999999999999999999999987766655554210 11111111 111111
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCcc-CCHHHHHHHHHhHHHHHHHHHHHHHcCCC-CCCCHHHHHHH
Q 001791 687 EKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLA-PGRNESYVKQL 764 (1012)
Q Consensus 687 ~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 764 (1012)
-..|.-.++.-.++-.+.+.||+..++..+-....+. .++...+++...+|+++..... |.. .+-..++++.+
T Consensus 754 -v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpk----gelk~~~~~dWv~d~ 828 (858)
T COG5215 754 -VNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPK----GELKFGLDEDWVKDF 828 (858)
T ss_pred -HHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCC----cchhhccchHHHHHH
Confidence 1112222222233334678999999888875544442 1345557888888888876521 100 12335666666
Q ss_pred HHHHHHHHHHH
Q 001791 765 SDFIIPALVEA 775 (1012)
Q Consensus 765 ~~~~~~~l~~~ 775 (1012)
+.....++...
T Consensus 829 l~~~~~ki~sq 839 (858)
T COG5215 829 LYGMMKKISSQ 839 (858)
T ss_pred HHHHHHHhhhh
Confidence 66555544433
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-36 Score=335.24 Aligned_cols=865 Identities=17% Similarity=0.193 Sum_probs=597.8
Q ss_pred HHHHhCCChhHHHHHHHHh--cCCChHHHHHHHHHHHHhhhc----Cc----hHHHHHHHHHHccCCCHHHHHHHHHHHH
Q 001791 13 LAVILGPDSAPFETLISHL--MSTSNEQRSEAELLFNLCKQQ----DP----DSLTLKLAHLLQRSPHPEARAMAAVLLR 82 (1012)
Q Consensus 13 ~~~~~~~~~~~l~~ll~~~--~s~d~~~r~~A~~~L~~~~~~----~p----~~~~~~l~~il~~~~~~~vr~~a~~~L~ 82 (1012)
...+|...+ +...|.++ .++|+++|+-|--.+.++... -+ ..+...+++++.....+.+|+--+-..-
T Consensus 28 l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviA 105 (1075)
T KOG2171|consen 28 LETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIA 105 (1075)
T ss_pred HHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 344554444 44445544 356889999998887754332 11 2356677777777888899987766655
Q ss_pred HhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC--CCcchHHHHHHHhhcCCCHHHH
Q 001791 83 KLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE--NGWPELLPFMFQCVSSDSVKLQ 160 (1012)
Q Consensus 83 ~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~--~~~~~ll~~l~~~~~~~~~~~r 160 (1012)
.+.+..-...|+ .+...|++..++ +++..|..+..++..+....... +..+++.+.+.+.+++++..+|
T Consensus 106 eia~~~l~e~WP--------ell~~L~q~~~S-~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr 176 (1075)
T KOG2171|consen 106 EIARNDLPEKWP--------ELLQFLFQSTKS-PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVR 176 (1075)
T ss_pred HHHHhccccchH--------HHHHHHHHHhcC-CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHH
Confidence 555443222375 455678999987 89999999999999998764321 2445888888899988876699
Q ss_pred HHHHHHHHHhhhhHh--hh----ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHH
Q 001791 161 ESAFLIFAQLSQYIG--DT----LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1012)
Q Consensus 161 ~~al~~l~~l~~~~~--~~----~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 234 (1012)
..++++++.++...+ .. +...++.++..+...+.++ +...-..++++|..++... +..+.+.+..+++
T Consensus 177 ~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~-d~~~a~~~l~~l~El~e~~-----pk~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 177 VAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDG-DDDAAKSALEALIELLESE-----PKLLRPHLSQIIQ 250 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhcc-chHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHH
Confidence 999999999998874 22 3334455555555566665 7777788999999998864 5667777777888
Q ss_pred HHHHHHhcC--ChHHHHHHHHHHHHHHccchHHHH---HhHHHHHHHHHHhhccCCcc--------------hHHHHHHH
Q 001791 235 TLTESLNNG--NEATAQEALELLIELAGTEPRFLR---RQLVDVVGSMLQIAEAESLE--------------EGTRHLAI 295 (1012)
Q Consensus 235 ~l~~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~--------------~~vr~~a~ 295 (1012)
...+...+. ++.+|+.|++++..+++..|.... ++...++..++..+...+.+ +.-...|.
T Consensus 251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~ 330 (1075)
T KOG2171|consen 251 FSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAE 330 (1075)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHH
Confidence 777766554 678999999999999988654433 35567777776655321111 12345566
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCC--Cc
Q 001791 296 EFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NT 373 (1012)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~ 373 (1012)
+.+..++.. .+. +.++|.+++++......++| ..++++...+..+++-++. ..
T Consensus 331 ~~lDrlA~~---L~g---------~~v~p~~~~~l~~~l~S~~w-------------~~R~AaL~Als~i~EGc~~~m~~ 385 (1075)
T KOG2171|consen 331 QALDRLALH---LGG---------KQVLPPLFEALEAMLQSTEW-------------KERHAALLALSVIAEGCSDVMIG 385 (1075)
T ss_pred HHHHHHHhc---CCh---------hhehHHHHHHHHHHhcCCCH-------------HHHHHHHHHHHHHHcccHHHHHH
Confidence 677776663 111 33444444444433334434 4678888888888876541 13
Q ss_pred chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhch
Q 001791 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 374 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
.++.+++.+.+.++|+++++|+||+.++|+++......+.++.. .+.+.+...+.++ +++|+..|+.++-.+.+.+..
T Consensus 386 ~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~ 465 (1075)
T KOG2171|consen 386 NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK 465 (1075)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH
Confidence 56778888889999999999999999999999998776665554 4556788888665 789999999999999998877
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCC----hhHHHHHHHHH
Q 001791 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK----QMVQEGALTAL 527 (1012)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~----~~v~~~a~~~l 527 (1012)
....+|++.++...+..|...+.+.|++.+..+|+.+....+ +.+.||++.+|+.|.+.+.+.+ ..+|...++|+
T Consensus 466 ~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEci 544 (1075)
T KOG2171|consen 466 SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ-EKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECL 544 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh-hhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHH
Confidence 777999999999666555443889999999999999999998 4578999999999999998765 56888899999
Q ss_pred HHHHHHhH-hhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhc--CCC-
Q 001791 528 ASVADSSQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQG--SQM- 603 (1012)
Q Consensus 528 ~~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~--~~~- 603 (1012)
+.++.++| +.|.|+...++..+...-.+ .-..+.++++..+..++.+++.+| +.|.||++.+|+.++.... ..+
T Consensus 545 sli~~AVGke~F~~~a~eliqll~~~~~~-~~~~dd~~~sy~~~~warmc~ilg-~~F~p~L~~Vmppl~~ta~~~p~~~ 622 (1075)
T KOG2171|consen 545 SLIARAVGKEKFLPLAEELIQLLLELQGS-DQDDDDPLRSYMIAFWARMCRILG-DDFAPFLPVVMPPLLKTARLDPDVA 622 (1075)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHhhccc-chhhccccHHHHHHHHHHHHHHhc-hhhHhHHHHHhHHHHHhhccCCccc
Confidence 99999999 67999999999988877432 223456788999999999999999 6799999999998886322 100
Q ss_pred --C------------------CCC----------chhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccC
Q 001791 604 --E------------------TDD----------PTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITS 653 (1012)
Q Consensus 604 --~------------------~~~----------~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~ 653 (1012)
+ .+. .-++.++..++.++...+..|.||+.++++..+-.+.....
T Consensus 623 ~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fh----- 697 (1075)
T KOG2171|consen 623 LSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFH----- 697 (1075)
T ss_pred CcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhh-----
Confidence 0 000 02556778899999999999999999999955555533110
Q ss_pred CCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhh-------cccccHHHHHHHhccccCccCC
Q 001791 654 ADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKE-------GFFPWIDQVAPTLVPLLKFYFH 726 (1012)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~-------~~~p~~~~~~~~l~~~l~~~~~ 726 (1012)
...|.+|+.++..++..... ...+-...+.+.++..+...+.
T Consensus 698 -------------------------------dgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e 746 (1075)
T KOG2171|consen 698 -------------------------------DGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPE 746 (1075)
T ss_pred -------------------------------hHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCc
Confidence 12356666777766654432 2333344555566666665556
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHh-----------cCCcHH-----------H
Q 001791 727 EEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALH-----------KEPDTE-----------I 784 (1012)
Q Consensus 727 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~-----------~ 784 (1012)
.++-....++++..++.+ |+..- .+++...+...+...+.+... .+.+.+ .
T Consensus 747 ~~vl~~vl~~f~~~i~~~------G~~~L-~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~l 819 (1075)
T KOG2171|consen 747 TEVLSEILESFAECIEVM------GDNCL-NEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYL 819 (1075)
T ss_pred HHHHHHHHHHHHHHHHhc------CcccC-CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHH
Confidence 677777777887777776 32211 234444444444443333321 011111 1
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHH
Q 001791 785 CASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEIL 864 (1012)
Q Consensus 785 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l 864 (1012)
...+...+..+++..+. .+.+.+..+++.+....... .... |.-+..++
T Consensus 820 l~~i~~i~~~l~k~~k~-----~f~p~f~~~~p~iv~~l~~~-------------------------~~~~-r~~av~~~ 868 (1075)
T KOG2171|consen 820 LDAISDILAALAKALKG-----SFLPFFENFLPLIVKLLKSK-------------------------KTVA-RQWAVCIF 868 (1075)
T ss_pred HHHHHHHHHHHHHHccc-----cccHHHHHHHHHHHHHHhcC-------------------------CcHH-HHHHHHHH
Confidence 11222233333333322 22223333333333322110 1112 55688899
Q ss_pred HHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccC------CChh
Q 001791 865 GTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND------ENQD 938 (1012)
Q Consensus 865 ~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~------~~~~ 938 (1012)
+.++...|+..++++..++|.+..++ .++++++|..|.=.+|-++++.|....|.....+|.+...+.. .+..
T Consensus 869 ~d~ie~~~~a~~~~~~~~~p~~~~~~-~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ 947 (1075)
T KOG2171|consen 869 DDLIEGCGEASAKYKERFLPLVLEAL-QDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRR 947 (1075)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhH
Confidence 99999999999999999999999999 5889999999999999999998888666666667766666553 3455
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhHccCC
Q 001791 939 VRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS 1004 (1012)
Q Consensus 939 vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~~~p~~ 1004 (1012)
...||..+++.++.+.+..+. +.+.++.+...+-... +.+-.--....++.++..++..
T Consensus 948 ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~~LPl~~-----D~eEa~~iy~~l~~L~e~n~p~ 1006 (1075)
T KOG2171|consen 948 ATENAIGAIAKILLFNPNRIP--VDQVLPAWLSWLPLKE-----DKEEAVPIYTFLSDLYESNHPI 1006 (1075)
T ss_pred HHHHHHHHHHHHHHhCCccCc--HHHHHHHHHHhCCCcc-----chhhhhhHHHHHHHHHHhCCCe
Confidence 888999999999999887654 7888888888885442 2233333567777777765443
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-36 Score=313.42 Aligned_cols=696 Identities=16% Similarity=0.236 Sum_probs=498.3
Q ss_pred HHHHHhh--cchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHH---HhhcCCCHHHHHHHHHHHHHhhhhHhhhcc-cc
Q 001791 108 LLQSIQL--ESAKSISKKLCDTVSELASNILPENGWPELLPFMF---QCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PH 181 (1012)
Q Consensus 108 ll~~l~~--~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~---~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~ 181 (1012)
+.+.|++ .++..+|+.+...+..+- .+|++...|. ...++.+...|..|-..|..=.......+. +.
T Consensus 15 l~~lLk~s~Spn~~~~~~~~~~leq~~-------~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 15 LAQLLKNSQSPNSETRNNVQEKLEQFN-------LFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHhccCCChHHHHHHHHHHHHHh-------cccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence 3444443 278889998877777653 3445444443 333444555565555555544333222222 23
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 001791 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1012)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~ 261 (1012)
...+-.-+++++.+. ++-+|...=-.+..++..- ....+|.+++.+.+.+.+++......|+.+|..+++.
T Consensus 88 ~~yiKs~~l~~lgd~-~~lIr~tvGivITTI~s~~--------~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcED 158 (885)
T KOG2023|consen 88 LDYIKSECLHGLGDA-SPLIRATVGIVITTIASTG--------GLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICED 158 (885)
T ss_pred HHHHHHHHHhhccCc-hHHHHhhhhheeeeeeccc--------ccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhh
Confidence 455556778888887 7777754433333333221 1234577888888888776655555555555554432
Q ss_pred chHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccC
Q 001791 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1012)
Q Consensus 262 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1012)
....+.. +|.
T Consensus 159 sa~~lds---------------------------------------------------------------------~~~- 168 (885)
T KOG2023|consen 159 SAQFLDS---------------------------------------------------------------------DVL- 168 (885)
T ss_pred hHHHHhh---------------------------------------------------------------------hcc-
Confidence 2211100 000
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH
Q 001791 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (1012)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 421 (1012)
..-+..++|.+.++.++++++.|.-|+.++.++.-..+..+..++++++.
T Consensus 169 ------------------------------~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle 218 (885)
T KOG2023|consen 169 ------------------------------TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLE 218 (885)
T ss_pred ------------------------------cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHH
Confidence 12244566667777788888999988888888877766777788999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC-CcccccCc
Q 001791 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC-TPEILTPY 500 (1012)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~-~~~~l~~~ 500 (1012)
.++.+-+|+++.||...|.++..+.+..++.+ .++++.++...+...+| .+..|...||.++..+++.- .++.+.||
T Consensus 219 ~lFalanD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd-~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 219 ILFALANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQD-VDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccC-cchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 99999999999999999999999999887777 78999999999999999 88899999999999999753 34678899
Q ss_pred HHHHHHHHHHHhhcC--------------------------------------------------------ChhHHHHHH
Q 001791 501 LDGIVSKLLVLLQNG--------------------------------------------------------KQMVQEGAL 524 (1012)
Q Consensus 501 ~~~il~~l~~~l~~~--------------------------------------------------------~~~v~~~a~ 524 (1012)
++.++|.|++-+.-+ +..+|+...
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 999999998744210 145788788
Q ss_pred HHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCC
Q 001791 525 TALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQME 604 (1012)
Q Consensus 525 ~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 604 (1012)
.++..++...+++ .++.++|.|.+.+. .+.+.+|+.++-++|.++...- +.|.||++.++++++.+.+..
T Consensus 377 AaLDVLanvf~~e---lL~~l~PlLk~~L~----~~~W~vrEagvLAlGAIAEGcM-~g~~p~LpeLip~l~~~L~DK-- 446 (885)
T KOG2023|consen 377 AALDVLANVFGDE---LLPILLPLLKEHLS----SEEWKVREAGVLALGAIAEGCM-QGFVPHLPELIPFLLSLLDDK-- 446 (885)
T ss_pred HHHHHHHHhhHHH---HHHHHHHHHHHHcC----cchhhhhhhhHHHHHHHHHHHh-hhcccchHHHHHHHHHHhccC--
Confidence 8888888877754 44556666666654 4789999999999999998877 679999999999999976532
Q ss_pred CCCchhHHHHHHHHHHHHHhc-CCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecch
Q 001791 605 TDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTS 683 (1012)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1012)
.-.+|.-...++++++.-.- ..-..|+..++..+++.+- |.+
T Consensus 447 -kplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll-D~N----------------------------------- 489 (885)
T KOG2023|consen 447 -KPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL-DSN----------------------------------- 489 (885)
T ss_pred -ccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh-ccc-----------------------------------
Confidence 23456555555665554332 2233566666666666551 111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 001791 684 VLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQ 763 (1012)
Q Consensus 684 ~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 763 (1012)
-.+.++||.++..+-+..+..+.||++.+++.+...+..|...+++. ...++|+++..++.+. +.+.|
T Consensus 490 -K~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI-LYDAIgtlAdsvg~~L-------n~~~Y--- 557 (885)
T KOG2023|consen 490 -KKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI-LYDAIGTLADSVGHAL-------NKPAY--- 557 (885)
T ss_pred -HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh-HHHHHHHHHHHHHHhc-------CcHHH---
Confidence 12358999999999999999999999999999998887654333322 4567777887775432 23344
Q ss_pred HHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCC
Q 001791 764 LSDFIIPALVEALH--KEPDTEICASMLDSLNECIQISGPLL---DEGQVRSIVDEIKQVITASSSRKRERAERAKAEDF 838 (1012)
Q Consensus 764 ~~~~~~~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~ 838 (1012)
++.++|+|++.|. +++|++. ...++|+..+....|.++ ..+.+...++.+.+.+....+.. .+...
T Consensus 558 -iqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~-------~~~~~ 628 (885)
T KOG2023|consen 558 -IQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQ-------QDPTV 628 (885)
T ss_pred -HHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhcc-------CCccc
Confidence 5666799998886 3445444 467888888888887753 34445555544443322211110 00100
Q ss_pred CHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH--HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh
Q 001791 839 DAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE--LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA 916 (1012)
Q Consensus 839 d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 916 (1012)
+ -.+..++-.+.++++.+++.+|+++-|.+.+ +...+..++ .+..+++|++++.++|++++.|.++
T Consensus 629 ~-----------~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~-~D~~peVRQS~FALLGDltk~c~~~ 696 (885)
T KOG2023|consen 629 E-----------APDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCL-QDEVPEVRQSAFALLGDLTKACFEH 696 (885)
T ss_pred c-----------CCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHh
Confidence 1 1223455578999999999999999888776 788888888 4889999999999999999999999
Q ss_pred hHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHH
Q 001791 917 ALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGK 996 (1012)
Q Consensus 917 ~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~ 996 (1012)
+.|+...++|.+...++.....+.+||+|++|.++.+.+..+++++..++..|...+..+. ......+|.+.+|||
T Consensus 697 v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~----~~~tllENtAITIGr 772 (885)
T KOG2023|consen 697 VIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN----TPKTLLENTAITIGR 772 (885)
T ss_pred ccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC----chHHHHHhhhhhhhh
Confidence 9999999999999888888999999999999999999999999999999999999997665 367899999999999
Q ss_pred HHhHccCCC
Q 001791 997 ICQFHRDSI 1005 (1012)
Q Consensus 997 l~~~~p~~~ 1005 (1012)
+...+|+.+
T Consensus 773 Lg~~~Pe~v 781 (885)
T KOG2023|consen 773 LGYICPEEV 781 (885)
T ss_pred hhccCHHhc
Confidence 999999987
No 7
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=302.97 Aligned_cols=885 Identities=15% Similarity=0.181 Sum_probs=599.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~---~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
..+.-+|+.+-+.+.++.+.|.+-+.-+.+.-++.-+..+.+-+.+ +....-|..+.+.||..+..-.+..-..+.+
T Consensus 47 kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~ 126 (1233)
T KOG1824|consen 47 KVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAA 126 (1233)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccccc
Confidence 3566667777788999999999999876665555445566655543 4567889999999999887642222234667
Q ss_pred HHHHHHHHHHHHHHhh-cchHhHHHHHHHHHHHHHhcccCCCCcch----HHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q 001791 99 HTQSSLKSMLLQSIQL-ESAKSISKKLCDTVSELASNILPENGWPE----LLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~-~~~~~vr~~~~~~l~~i~~~~~~~~~~~~----ll~~l~~~~~~~~~~~r~~al~~l~~l~~~ 173 (1012)
.+...+...+.+.+.. +....++--...+++.+..... ...|+ ++..+.-.++++...+|+.++.+++.++..
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g--~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~ 204 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFG--TLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS 204 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhc--ccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh
Confidence 7777777778777765 3444477777777776665432 13333 445555556677788999999999999998
Q ss_pred HhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHH---hcCChHHHHH
Q 001791 174 IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL---NNGNEATAQE 250 (1012)
Q Consensus 174 ~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l---~~~~~~~~~~ 250 (1012)
.+.. .+..++..+...|.....+..-...++|++.+..... ..+...++.+++.+.+.. +..+.+.|+.
T Consensus 205 ~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag-----~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~ 276 (1233)
T KOG1824|consen 205 CNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAG-----HRFGSHLDKIVPLVADYCNKIEEDDDELREY 276 (1233)
T ss_pred cCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhc-----chhhcccchhhHHHHHHhcccccCcHHHHHH
Confidence 8776 4778888888888776444444467899999988653 334455555666665555 5668889999
Q ss_pred HHHHHHHHHccchHHHHHhHHHHHHHHHHhhcc--------------------------------CCcchHHHHHHHHHH
Q 001791 251 ALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------------------ESLEEGTRHLAIEFV 298 (1012)
Q Consensus 251 ~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~--------------------------------~~~~~~vr~~a~~~l 298 (1012)
+++.|..+...+|..+.||.+.+++.++..+.. .|..+.+|++|.+++
T Consensus 277 ~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl 356 (1233)
T KOG1824|consen 277 CLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCL 356 (1233)
T ss_pred HHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHH
Confidence 999999999999999999999999998876521 011235899999999
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCC-------------------ccccCCCCCCccccCCcchhhHH
Q 001791 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD-------------------PLWHSAETEDEDAGESSNYSVGQ 359 (1012)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~-------------------~~~~~~~~~~ed~~~~~~~~~a~ 359 (1012)
..++.. .. ..++.+.+.+-|.++.++.+.++. .+|..+++.-++ +... ..
T Consensus 357 ~a~IsS---R~---E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~--~g~~--s~- 425 (1233)
T KOG1824|consen 357 EAVISS---RL---EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ--GGTP--SD- 425 (1233)
T ss_pred HHHHhc---cH---HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc--cCCc--cc-
Confidence 998874 11 124445555555555555443221 233332111111 1000 00
Q ss_pred HHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCC--hhHHHH
Q 001791 360 ECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPH--PRVRWA 437 (1012)
Q Consensus 360 ~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~--~~vr~~ 437 (1012)
+..+ ....+.++..+...+++...+.|..++..|..++...++....+++.++|.+...|.|.+ ...+..
T Consensus 426 --~~~L------~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~ 497 (1233)
T KOG1824|consen 426 --LSML------SDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKID 497 (1233)
T ss_pred --hHHH------HhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHH
Confidence 0111 123455666677777777788999999999999999999889999999999999998874 456666
Q ss_pred HHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc------ccccCcHHHHHHHHHHH
Q 001791 438 AINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP------EILTPYLDGIVSKLLVL 511 (1012)
Q Consensus 438 a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~------~~l~~~~~~il~~l~~~ 511 (1012)
++..+.......++....++.+.+.|.+.....+ +-+.+...|......+++...+ -...||+.++....++.
T Consensus 498 ~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d-~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~r 576 (1233)
T KOG1824|consen 498 ALVFLYSALISHPPEVFHPHLSALSPPVVAAVGD-PFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQR 576 (1233)
T ss_pred HHHHHHHHHhcCChhhcccchhhhhhHHHHHhcC-chHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHH
Confidence 7666665555555554488999999999999999 8888988888888888875432 23468888888888887
Q ss_pred hhcC--ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHH
Q 001791 512 LQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 589 (1012)
Q Consensus 512 l~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~ 589 (1012)
+... +.+||++|+.|+|.++..+|+.....++.+++.+.+-+++. .-|-.|+.++..|+.+.-.-...|.+.
T Consensus 577 L~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nE------iTRl~AvkAlt~Ia~S~l~i~l~~~l~ 650 (1233)
T KOG1824|consen 577 LKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNE------ITRLTAVKALTLIAMSPLDIDLSPVLT 650 (1233)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhch------hHHHHHHHHHHHHHhccceeehhhhHH
Confidence 7644 68999999999999999999888889999999999988752 346667888888875543222344455
Q ss_pred HHHHHHHH-HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccch------------------------------------
Q 001791 590 QVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYM------------------------------------ 632 (1012)
Q Consensus 590 ~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l------------------------------------ 632 (1012)
.+++.+.. +... .+.++-..+.++..+++.++..+.+++
T Consensus 651 ~il~~l~~flrK~----~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 651 EILPELASFLRKN----QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccH
Confidence 55554444 1110 012333344444444444444333322
Q ss_pred ------hhhhHHHHHHhccCCCc--------------cccCCCCCccccCC----CCcccchhh----------------
Q 001791 633 ------SVVMPPLLQSAQLKPDV--------------TITSADSDNEIEDS----DDDSMETIT---------------- 672 (1012)
Q Consensus 633 ------~~i~~~ll~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~~---------------- 672 (1012)
..+++.++..+.. |-. .+.....+-+-.+. .-.-.+..+
T Consensus 727 ~l~~~~~~iL~~ii~ll~S-pllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA 805 (1233)
T KOG1824|consen 727 SLLKISNPILDEIIRLLRS-PLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVA 805 (1233)
T ss_pred HHHHHhhhhHHHHHHHhhC-ccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHH
Confidence 2222222222211 000 00000000000000 000000000
Q ss_pred -----cCCceeee--------c--chhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhH
Q 001791 673 -----LGDKRIGI--------K--TSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAM 737 (1012)
Q Consensus 673 -----~~~~~~~v--------~--~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l 737 (1012)
..++..++ + .+....|..|+-.+|++....+..- ...+...++..++. .+++|+.+|..+|
T Consensus 806 ~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~s-p~edvksAAs~AL 881 (1233)
T KOG1824|consen 806 ALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNS-PSEDVKSAASYAL 881 (1233)
T ss_pred HHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCC-ChHHHHHHHHHHh
Confidence 00000000 0 1111245677777777776544322 24445566677774 5999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 001791 738 PELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQ 817 (1012)
Q Consensus 738 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~ 817 (1012)
|.+..+- .+.++|.+++.+..++.+++. .+.++.+++..... +.+.+.++.+|.
T Consensus 882 Gsl~vgn--------------------l~~yLpfil~qi~sqpk~QyL--LLhSlkevi~~~sv----d~~~~~v~~IW~ 935 (1233)
T KOG1824|consen 882 GSLAVGN--------------------LPKYLPFILEQIESQPKRQYL--LLHSLKEVIVSASV----DGLKPYVEKIWA 935 (1233)
T ss_pred hhhhcCc--------------------hHhHHHHHHHHHhcchHhHHH--HHHHHHHHHHHhcc----chhhhhHHHHHH
Confidence 9886531 234457777777776665554 78899999987644 366778889999
Q ss_pred HHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHH
Q 001791 818 VITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAE 897 (1012)
Q Consensus 818 ~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~ 897 (1012)
.|.+..++ .++..|.-+++|+|.++-..|+...|-+.. .+ ++..+.
T Consensus 936 lL~k~cE~--------------------------~eegtR~vvAECLGkL~l~epesLlpkL~~-------~~-~S~a~~ 981 (1233)
T KOG1824|consen 936 LLFKHCEC--------------------------AEEGTRNVVAECLGKLVLIEPESLLPKLKL-------LL-RSEASN 981 (1233)
T ss_pred HHHHhccc--------------------------chhhhHHHHHHHhhhHHhCChHHHHHHHHH-------Hh-cCCCcc
Confidence 99887642 122357789999999999988776655444 33 577888
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCC
Q 001791 898 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN 977 (1012)
Q Consensus 898 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~ 977 (1012)
.|..++.++.+.+..-++.+.+++.+.+..++..++|+|.+||+.|..++...+++.+..+++.++++||.|+..-....
T Consensus 982 ~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~eTkvrk 1061 (1233)
T KOG1824|consen 982 TRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSETKVRK 1061 (1233)
T ss_pred hhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999998888889999999999999999999999999999999999999999999999999999998654221
Q ss_pred -----------C-CCchhhhhHHHHHHHHHHHHhHccCCCChhhhc
Q 001791 978 -----------A-LQPENLMAYDNAVSALGKICQFHRDSIDAAQVL 1011 (1012)
Q Consensus 978 -----------~-~~~~~~~~~~na~~~~~~l~~~~p~~~~~~~~~ 1011 (1012)
+ .+|+....|..|-.|+-.++...=+.+++-+++
T Consensus 1062 elIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl 1107 (1233)
T KOG1824|consen 1062 ELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFL 1107 (1233)
T ss_pred hhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHH
Confidence 1 146788999999999999998776667666654
No 8
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-32 Score=293.01 Aligned_cols=689 Identities=16% Similarity=0.201 Sum_probs=460.5
Q ss_pred CChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC--
Q 001791 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1012)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~-- 95 (1012)
||.+.+.++++++.++|++.|+.||++|+++.+ .|+ |+..+++|+.+ +-+-.||+.|+++|||.|.+. |+.
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K-~pg-Fv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~----W~~~~ 74 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEK-QPG-FVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKS----WSSHE 74 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CCc-HHHHHHHHHHccCCchhHHHHHHHHHHHHHHhc----CCccC
Confidence 788999999999999999999999999999999 686 67999999987 567788999999999999998 653
Q ss_pred -------CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHH
Q 001791 96 -------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFA 168 (1012)
Q Consensus 96 -------l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~ 168 (1012)
+.++.+..+|..++..+.+ .+..+|.+...++..|.+.++| +.||.+++.+...+++++....-+|+.++.
T Consensus 75 ~~g~~~~I~e~dk~~irenIl~~iv~-~p~~iRvql~~~l~~Ii~~D~p-~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~ 152 (1010)
T KOG1991|consen 75 APGRPFGIPEEDKAVIRENILETIVQ-VPELIRVQLTACLNTIIKADYP-EQWPGLLDKIKNLLQSQDANHVYGALLCLY 152 (1010)
T ss_pred CCCCcCCCChHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHhcCCc-ccchhHHHHHHHHhcCcchhhHHHHHHHHH
Confidence 5789999999999999998 6889999999999999999999 799999999999999999999999999999
Q ss_pred HhhhhHh-----------hhccccHHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHh-hcC-cchHhHHHhhHHHHH
Q 001791 169 QLSQYIG-----------DTLTPHLKHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQC-LTS-SADRDRFQDLLPLMM 233 (1012)
Q Consensus 169 ~l~~~~~-----------~~~~~~~~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~~~~~-~~~-~~~~~~~~~~~~~ll 233 (1012)
.+++... .-+...++.+.+.+.+.+.++ .+..+.+..++.+..++.. ++. -...+.|..++..++
T Consensus 153 qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l 232 (1010)
T KOG1991|consen 153 QLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFL 232 (1010)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHH
Confidence 9997532 112335667777777777766 1345556677777666654 110 112344444444444
Q ss_pred HHHHHHHh----cCChH---------HHHHHHHHHHHHHccchH--------------HHHHhHHHHHHHHHHhhcc---
Q 001791 234 RTLTESLN----NGNEA---------TAQEALELLIELAGTEPR--------------FLRRQLVDVVGSMLQIAEA--- 283 (1012)
Q Consensus 234 ~~l~~~l~----~~~~~---------~~~~~~~~L~~l~~~~~~--------------~~~~~~~~i~~~l~~~~~~--- 283 (1012)
..+...+. +-+++ ..+.|+..+.++.++|.+ ++..+.+.+.+..++.+..
T Consensus 233 ~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~ 312 (1010)
T KOG1991|consen 233 SILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQ 312 (1010)
T ss_pred HHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44332111 11333 446788888888876631 1233445566655555421
Q ss_pred -CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH-HHHHhhccCCCCc-cccCCCCC------CccccCCcc
Q 001791 284 -ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA-ILMSMLLDIEDDP-LWHSAETE------DEDAGESSN 354 (1012)
Q Consensus 284 -~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~~~-~~~~~~~~------~ed~~~~~~ 354 (1012)
.-..+++-..++.++...+.. ..+++.+.|++.-++. .++..|+..+++. .|..++.+ |--++..++
T Consensus 313 ~~yls~rvl~~~l~fl~~~Vs~----~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp 388 (1010)
T KOG1991|consen 313 QLYLSDRVLYYLLNFLEQCVSH----ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSP 388 (1010)
T ss_pred cccCCHHHHHHHHHHHHHhccH----HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCC
Confidence 224566777788888887764 2356667788777655 4677888765543 47655432 111235567
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC--------CCChhHHHHHHHHHHHHHhhcHH--HHHHhHHH-HHHHH
Q 001791 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--------APEWQKHHAALIALAQIAEGCAK--VMVKNLEQ-VLSMV 423 (1012)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~--------~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~-i~~~l 423 (1012)
..+|..++..++..-| +..++.+++++.+.+. ..+.+.+++|+.++|++++...+ .+...++. +++.+
T Consensus 389 ~~Aa~~~l~~~~~KR~-ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hV 467 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRG-KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHV 467 (1010)
T ss_pred cHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHh
Confidence 7788888888888776 6778888888777665 24689999999999999976542 34455555 45889
Q ss_pred HhhCCCCChhHHHHHHHHHHHhh-hhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc--ccccCc
Q 001791 424 LNSFRDPHPRVRWAAINAIGQLS-TDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPY 500 (1012)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~-~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~ 500 (1012)
++.++++....|..|||.++.++ ..++. ...+.+++....+++.+++.-.||..|+.||..++.+... +.+.++
T Consensus 468 fP~f~s~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h 544 (1010)
T KOG1991|consen 468 FPEFQSPYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH 544 (1010)
T ss_pred hHhhcCchhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh
Confidence 99999999999999999999999 45544 3467888999999988327778999999999999998752 347899
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc----c--ccccchhhHHHHH---H
Q 001791 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA----T--DKSNRMLRAKSME---C 571 (1012)
Q Consensus 501 ~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~----~--~~~~~~lr~~a~~---~ 571 (1012)
++.+|+.++++.+..+.. ....++..++...++++.||...+...|.+.+... . ++.+..-.-.|.. +
T Consensus 545 vp~~mq~lL~L~ne~End---~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T 621 (1010)
T KOG1991|consen 545 VPPIMQELLKLSNEVEND---DLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRT 621 (1010)
T ss_pred hhHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence 999999999998766543 34467778888889999999888877776554321 1 1111111112233 3
Q ss_pred HHHHHhhhC--hhhhh---hhHHHHHHHHHH------------HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhh
Q 001791 572 ISLVGMAVG--KDKFR---DDAKQVMEVLMS------------LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSV 634 (1012)
Q Consensus 572 l~~l~~~~~--~~~~~---~~~~~i~~~l~~------------l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 634 (1012)
+..+..++. ++.+. |.+-.++..++. +.....--...+...+.+.|.-+..++...-..|++.
T Consensus 622 i~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d 701 (1010)
T KOG1991|consen 622 ISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTD 701 (1010)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333333333 12221 222222222222 0000000001234556666777777777777788888
Q ss_pred hhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHH
Q 001791 635 VMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVA 714 (1012)
Q Consensus 635 i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~ 714 (1012)
+++.+-+.+-++.+......+-. .--++.. .+...-.....++.+.|++.+..++-+++.-+-.|++..+
T Consensus 702 ~~~~l~N~vt~g~~~~~s~~~y~-------~il~~i~---~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~ 771 (1010)
T KOG1991|consen 702 MMPALHNYVTYGTPSLLSNPDYL-------QILLEII---KKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFL 771 (1010)
T ss_pred HHHHHhhheeeCchhhhccchHH-------HHHHHHH---HHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHH
Confidence 88888777655422111000000 0000000 0000000112234567999999999999887777788777
Q ss_pred HHhccccCc-cCCHHHHHHHHHh
Q 001791 715 PTLVPLLKF-YFHEEVRKAAVSA 736 (1012)
Q Consensus 715 ~~l~~~l~~-~~~~~vr~~a~~~ 736 (1012)
+..+..+.. ......|..+.+.
T Consensus 772 ~~a~~~l~~~~e~s~~~~~~leV 794 (1010)
T KOG1991|consen 772 ELALSRLTREVETSELRVMLLEV 794 (1010)
T ss_pred HHHHHHHhccccchHHHHHHHHH
Confidence 777666553 1233455555543
No 9
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=100.00 E-value=5.5e-30 Score=274.76 Aligned_cols=860 Identities=14% Similarity=0.191 Sum_probs=583.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-Hhhhc----Cc---hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001791 26 TLISHLMSTSNEQRSEAELLFN-LCKQQ----DP---DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1012)
Q Consensus 26 ~ll~~~~s~d~~~r~~A~~~L~-~~~~~----~p---~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~ 97 (1012)
.+++-+.|+|.+.|=.|+..|. ++++. +. ...+..+++.+ ++.+++|+.+|..++.-+.++ +.
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL-~D~ngEVQnlAVKClg~lvsK--------vk 79 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLL-EDKNGEVQNLAVKCLGPLVSK--------VK 79 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHH-hccCcHHHHHHHHHHHHHHhh--------ch
Confidence 8899999999999999999874 44442 11 12356666666 467899999999999988643 46
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-------CCcchHHHHHHHhhcCC--CHHHHHHHHHHHH
Q 001791 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSSD--SVKLQESAFLIFA 168 (1012)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-------~~~~~ll~~l~~~~~~~--~~~~r~~al~~l~ 168 (1012)
++..+.+.+.|+..+.+ .....|...+..+.......-|. ...+.+.|.+.+.+... ....+.-++..++
T Consensus 80 e~~le~~ve~L~~~~~s-~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 80 EDQLETIVENLCSNMLS-GKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred HHHHHHHHHHHhhhhcc-chhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 77888888999988776 45566666666666665543331 23345556666555432 3457777888888
Q ss_pred HhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHH
Q 001791 169 QLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1012)
Q Consensus 169 ~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 248 (1012)
.+...++.-+.++...+...++..+..+ ...||+.|+.+++.++... ....|..++..+++-+. +...+...
T Consensus 159 d~lsr~g~ll~~fh~~il~~l~~ql~s~-R~aVrKkai~~l~~la~~~----~~~ly~~li~~Ll~~L~---~~~q~~~~ 230 (1233)
T KOG1824|consen 159 DVLSRFGTLLPNFHLSILKCLLPQLQSP-RLAVRKKAITALGHLASSC----NRDLYVELIEHLLKGLS---NRTQMSAT 230 (1233)
T ss_pred HHHHhhcccCcchHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhccC---CCCchHHH
Confidence 8888777766666677777777777776 7899999999999999876 34445554444443332 23455667
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001791 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA-ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1012)
Q Consensus 249 ~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1012)
...+++|..+++..+..+..|++.+++.+.+..+. ...++++|+.+++.+..+.. +.|. ...++.+.++..++
T Consensus 231 rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~---rcp~---ei~p~~pei~~l~l 304 (1233)
T KOG1824|consen 231 RTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR---RCPK---EILPHVPEIINLCL 304 (1233)
T ss_pred HHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH---hChh---hhcccchHHHHHHH
Confidence 78899999999999999999999999988877632 23478899999999999988 4663 45678899999999
Q ss_pred HhhccCC-------CCc--cccCCCC--------CCccccCCcchhhHHHHHHHHHHHcCCCcchH----HHHHHHHHhh
Q 001791 328 SMLLDIE-------DDP--LWHSAET--------EDEDAGESSNYSVGQECLDRLAIALGGNTIVP----VASEQLPAYL 386 (1012)
Q Consensus 328 ~~l~~~~-------~~~--~~~~~~~--------~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~----~~~~~l~~~l 386 (1012)
.++.+.. +|+ ....+.+ .|+|+..|..+++|.+|+..+...- .+.++ .+-|.+...+
T Consensus 305 ~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR--~E~L~~~~q~l~p~lI~Rf 382 (1233)
T KOG1824|consen 305 SYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR--LEMLPDFYQTLGPALISRF 382 (1233)
T ss_pred HHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc--HHHHHHHHHHhCHHHHHHH
Confidence 8887631 111 0111111 1122223455678889887765432 12333 2333333444
Q ss_pred CCCChhHHHHHHHHHHHHHhhc------------------H---HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001791 387 AAPEWQKHHAALIALAQIAEGC------------------A---KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1012)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~------------------~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1012)
+..+..+|.-.+.++-.+.... + ..+....+.++..+-+.+++.+...|..++..+..+
T Consensus 383 kEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~el 462 (1233)
T KOG1824|consen 383 KEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTEL 462 (1233)
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHH
Confidence 4444555555555444443221 1 233445567777787888887777899999999999
Q ss_pred hhhhchhHHhhhhhhhHHHHHhhcCCCC-ChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHH
Q 001791 446 STDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGAL 524 (1012)
Q Consensus 446 ~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~ 524 (1012)
...++... .++++.++|.+...++|.+ ....+..+..++...+...+++.+.|+++.+.+.+.....++.+++-..|+
T Consensus 463 i~~lp~~l-~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL 541 (1233)
T KOG1824|consen 463 INVLPGAL-AQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEAL 541 (1233)
T ss_pred HHhCcchh-hhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHH
Confidence 98887766 7899999999999999832 345677888888888888888899999999999999999999999999999
Q ss_pred HHHHHHHHHhHh-------hhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001791 525 TALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1012)
Q Consensus 525 ~~l~~l~~~~~~-------~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1012)
.....+++...+ ++.||+..++....+.+.. .+.++.+|++|+.|+|.+...+| +.....++.+++.+.+
T Consensus 542 ~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a--~d~DqeVkeraIscmgq~i~~fg-D~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 542 LVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKA--TDSDQEVKERAISCMGQIIANFG-DFLGNELPRTLPILLE 618 (1233)
T ss_pred HHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHH
Confidence 999999887652 2457888888888888764 44678899999999999999999 7788889999999888
Q ss_pred -HhcCCCCCCCchhHHHHHHHHHHHHHh-cCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCC
Q 001791 598 -LQGSQMETDDPTTSYMLQAWARLCKCL-GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGD 675 (1012)
Q Consensus 598 -l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1012)
+.+ +.-|-.+.+++..++.+. .-+..|.+..+++.+...+...
T Consensus 619 Rl~n------EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~----------------------------- 663 (1233)
T KOG1824|consen 619 RLGN------EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKN----------------------------- 663 (1233)
T ss_pred HHhc------hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHH-----------------------------
Confidence 443 334566777777776542 3345688888888887776321
Q ss_pred ceeeecchhHHHHHHHHHHHHHHHHHhhhccccc-HHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCC
Q 001791 676 KRIGIKTSVLEEKATACNMLCCYADELKEGFFPW-IDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAP 754 (1012)
Q Consensus 676 ~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~-~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 754 (1012)
.-.-|...+.++..++++++..+.++ ++.++..+.+++++. +-.+-+.|...|.++....
T Consensus 664 --------~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lises-dlhvt~~a~~~L~tl~~~~---------- 724 (1233)
T KOG1824|consen 664 --------QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISES-DLHVTQLAVAFLTTLAIIQ---------- 724 (1233)
T ss_pred --------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcc----------
Confidence 01123556778888899988888777 466778888888754 5566777777777776543
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 001791 755 GRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAK 834 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 834 (1012)
+..+..+.+.+++.++..+++.- .....+.++-.++......-.+ .++ +..+...+...-+.. .
T Consensus 725 ---ps~l~~~~~~iL~~ii~ll~Spl---lqg~al~~~l~~f~alV~t~~~-~l~--y~~l~s~lt~PV~~~-------~ 788 (1233)
T KOG1824|consen 725 ---PSSLLKISNPILDEIIRLLRSPL---LQGGALSALLLFFQALVITKEP-DLD--YISLLSLLTAPVYEQ-------V 788 (1233)
T ss_pred ---cHHHHHHhhhhHHHHHHHhhCcc---ccchHHHHHHHHHHHHHhcCCC-Ccc--HHHHHHHHcCCcccc-------c
Confidence 33345555666676666665432 1112222222222221111001 111 122222322211100 0
Q ss_pred ccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhh
Q 001791 835 AEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCR 914 (1012)
Q Consensus 835 ~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~ 914 (1012)
+ ...........+.|.+.++..+|+.-.+...+++..+.. +.+++..|..++-.+|++-...+
T Consensus 789 ~--------------~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s---~~s~~~ikvfa~LslGElgr~~~ 851 (1233)
T KOG1824|consen 789 T--------------DGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQS---PKSSDSIKVFALLSLGELGRRKD 851 (1233)
T ss_pred c--------------cchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhC---CCCchhHHHHHHhhhhhhccCCC
Confidence 0 013345566789999999999997666655555555543 45677788899999999865543
Q ss_pred hhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHH-----------HHHHHHHHhhcCCCCC----
Q 001791 915 EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVG-----------EALSRLNVVIRHPNAL---- 979 (1012)
Q Consensus 915 ~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~-----------~il~~L~~~l~~~~~~---- 979 (1012)
.. +.+.+...+++++++++.+|+.+|.++||.++...-+.|-|++- -+|..|.+++......
T Consensus 852 ~s---~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~ 928 (1233)
T KOG1824|consen 852 LS---PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKP 928 (1233)
T ss_pred CC---cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhh
Confidence 32 34556668899999999999999999999998854444443321 1456666666533211
Q ss_pred -------------CchhhhhHHHHHHHHHHHHhHccCCC
Q 001791 980 -------------QPENLMAYDNAVSALGKICQFHRDSI 1005 (1012)
Q Consensus 980 -------------~~~~~~~~~na~~~~~~l~~~~p~~~ 1005 (1012)
...++.+|--++.|+|+++...|+.+
T Consensus 929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epesL 967 (1233)
T KOG1824|consen 929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPESL 967 (1233)
T ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHHH
Confidence 11345667777999999999999875
No 10
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-26 Score=241.75 Aligned_cols=601 Identities=17% Similarity=0.235 Sum_probs=410.0
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc----
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP---- 94 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~---- 94 (1012)
+.+.+.+.|..+.+||+.+|+.||+.|+.+.. ++ +|...+++++.+ ..++.+|..|++.+||.++++ |.
T Consensus 3 ~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~-q~-~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~----W~~~~~ 76 (960)
T KOG1992|consen 3 NLETLANYLLQTLSPDPSVRKPAERALRSLEG-QQ-NYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRN----WIPAED 76 (960)
T ss_pred cHHHHHHHHHhcCCCCCccCchHHHHHHHhcc-CC-CchHHHHHHHhccCcChhHHHHHHHHHHHHHHhc----cCcCCC
Confidence 56788999999999999999999999999998 44 466788888877 459999999999999999998 64
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001791 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1012)
Q Consensus 95 ---~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1012)
.+.++.++.||+.++..+-+ ....++..+..+++.|+++++| +.||+|+|.|...+++.+-+...+.+..-..+.
T Consensus 77 ~~~~i~~~~~e~ikslIv~lMl~-s~~~iQ~qlseal~~Ig~~DFP-~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiF 154 (960)
T KOG1992|consen 77 SPIKIIEEDREQIKSLIVTLMLS-SPFNIQKQLSEALSLIGKRDFP-DKWPTLLPDLVARLSSGDFNVINGVLVTAHSIF 154 (960)
T ss_pred CccccchhHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhccccc-hhhHHHHHHHHhhccccchHHHHHHHHHHHHHH
Confidence 46788999999999999987 6789999999999999999999 799999999999999988877777777777676
Q ss_pred hhHhhhc---------cccH----HHHHHHHHHh---hcCC-CChHHH---HHHHHHHHHHHHhhcCcchHhHHHhhHHH
Q 001791 172 QYIGDTL---------TPHL----KHLHAVFLNC---LTNS-NNPDVK---IAALNAVINFIQCLTSSADRDRFQDLLPL 231 (1012)
Q Consensus 172 ~~~~~~~---------~~~~----~~l~~~l~~~---l~~~-~~~~vr---~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (1012)
+.....+ ...+ ..+..++.+. .+.. .+...- ...+-.+.++...+...+-++.|.+.+..
T Consensus 155 kr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~ 234 (960)
T KOG1992|consen 155 KRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKT 234 (960)
T ss_pred HhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHH
Confidence 6532211 1111 1222233222 2111 122211 12222222333333233357778888888
Q ss_pred HHHHHHHHHhcCCh-------------HHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCc---chHHHHHHH
Q 001791 232 MMRTLTESLNNGNE-------------ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL---EEGTRHLAI 295 (1012)
Q Consensus 232 ll~~l~~~l~~~~~-------------~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~vr~~a~ 295 (1012)
+|..+.+.+..++| +.+...|+.+.-.+.+|.+.+.+++++++...+.++..... -+.+...|+
T Consensus 235 wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al 314 (960)
T KOG1992|consen 235 WMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKAL 314 (960)
T ss_pred HHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 88888877763221 35678899999999999999999999999888877643332 345677889
Q ss_pred HHHHHHHHhhhccchhhhcchhhHHHHHHHH-HHhhccCCCCccccCCCC------CCccccCCcchhhHHHHHHHHHHH
Q 001791 296 EFVITLAEARERAPGMMRKLPQFINRLFAIL-MSMLLDIEDDPLWHSAET------EDEDAGESSNYSVGQECLDRLAIA 368 (1012)
Q Consensus 296 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~l~~~~~~~~~~~~~~------~~ed~~~~~~~~~a~~~l~~l~~~ 368 (1012)
+++.++++-..+. +.. ...+.+..+...+ +..+.-..+|.+..+++. +-|..|.++.+++|.+++..|+++
T Consensus 315 ~FLt~V~~r~~y~-~~F-~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~ 392 (960)
T KOG1992|consen 315 QFLTSVSRRPHYA-ELF-EGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKN 392 (960)
T ss_pred HHHHHHHhhhhhH-hhh-cchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHH
Confidence 9999999843221 111 1122333333322 122221122222211110 111223455688999999999999
Q ss_pred cCCCcchHHHHHHHHHhhC------CCChhHHHHHHHHHHHHHhhcHH------------HHHHhH-HHHHHHHHhhCCC
Q 001791 369 LGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNL-EQVLSMVLNSFRD 429 (1012)
Q Consensus 369 ~~~~~~~~~~~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~------------~~~~~l-~~i~~~l~~~l~d 429 (1012)
+. ..+.+.+...++..+. +.+|+.+..++..+.+++..... ....++ ..++|.+.+.=..
T Consensus 393 fe-~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn 471 (960)
T KOG1992|consen 393 FE-GQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVN 471 (960)
T ss_pred hc-chhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccc
Confidence 85 4666666666776666 57999999999999998764221 111222 3344554443345
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC--------cccccCcH
Q 001791 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT--------PEILTPYL 501 (1012)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--------~~~l~~~~ 501 (1012)
++|.++..+.+-+-.+=..++ ..++-.++|.+...|.. +...|..-|+.++..+....+ +..+.||.
T Consensus 472 ~~pilka~aIKy~~~FR~ql~----~~~lm~~~p~li~~L~a-~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~ 546 (960)
T KOG1992|consen 472 EFPILKADAIKYIYTFRNQLG----KEHLMALLPRLIRFLEA-ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFV 546 (960)
T ss_pred cccchhhcccceeeeecccCC----hHHHHHHHHHHHHhccC-cchHHHHHHHHHHHhccccccCccccccchhhcchHH
Confidence 788899888876554443333 46788999999999998 778888999999999875443 34577888
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc-cccccchhhHHHHHHHHHHHhhhC
Q 001791 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSMECISLVGMAVG 580 (1012)
Q Consensus 502 ~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1012)
..++..++..++.+...--+....++-.+.....+...|+.+.+++.|.+++... .++.....-...+++++.+.+..+
T Consensus 547 ~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~ 626 (960)
T KOG1992|consen 547 EILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTC 626 (960)
T ss_pred HHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 8888888888877766666778888888888888888899999998888876542 233334445567888888887665
Q ss_pred h---hhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHH
Q 001791 581 K---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1012)
Q Consensus 581 ~---~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1012)
+ .....+...+++++..+..+++ .+..+++++.++.++...+..+.+....++|.+
T Consensus 627 ~~~~~~vs~~e~aL~p~fq~Il~eDI---~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~l 685 (960)
T KOG1992|consen 627 KANPSAVSSLEEALFPVFQTILSEDI---QEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPL 685 (960)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHh
Confidence 3 2345555666666655433221 245678888888888887774444444444443
No 11
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-26 Score=243.39 Aligned_cols=661 Identities=18% Similarity=0.259 Sum_probs=439.1
Q ss_pred HHHHHHhCCChhHHHHHHHHhcCC---ChHHHHHHHHHHHH-hhhcCchHHHHHHHHHH---------------c--cCC
Q 001791 11 SQLAVILGPDSAPFETLISHLMST---SNEQRSEAELLFNL-CKQQDPDSLTLKLAHLL---------------Q--RSP 69 (1012)
Q Consensus 11 ~~~~~~~~~~~~~l~~ll~~~~s~---d~~~r~~A~~~L~~-~~~~~p~~~~~~l~~il---------------~--~~~ 69 (1012)
.++.+.-.-|..++..+|...+.. +...|..|=-+|+. +-..+|..-..+.-..+ . .++
T Consensus 23 ~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqVK~~il~tL~~~ 102 (859)
T KOG1241|consen 23 KQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQVKNNILRTLGSP 102 (859)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 344444446777777777665443 23567777667753 22223321111111111 1 134
Q ss_pred CHHHHHHHHHHHHHhcccC-CCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC---CCcchHH
Q 001791 70 HPEARAMAAVLLRKLLTRD-DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE---NGWPELL 145 (1012)
Q Consensus 70 ~~~vr~~a~~~L~~~i~~~-~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~---~~~~~ll 145 (1012)
.|..+..|+.++..+.... +.+.|+ .+...+..-...++...++.....+++.++...-|+ ...++++
T Consensus 103 ep~~~s~Aaq~va~IA~~ElP~n~wp--------~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL 174 (859)
T KOG1241|consen 103 EPRRPSSAAQCVAAIACIELPQNQWP--------ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL 174 (859)
T ss_pred CCCccchHHHHHHHHHHhhCchhhCH--------HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence 4555666666666554432 223453 344445555555555579999999999999865553 2445566
Q ss_pred HHHHHhhcC--CCHHHHHHHHHHHHHhhhhHhhhccc--cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch
Q 001791 146 PFMFQCVSS--DSVKLQESAFLIFAQLSQYIGDTLTP--HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1012)
Q Consensus 146 ~~l~~~~~~--~~~~~r~~al~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 221 (1012)
-.+.+.+.. ++..+|.+|+.+|..-.+.....|.. ..+.+++...+.-+.+ +.+++.+|+.||.+++.-+
T Consensus 175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~-d~~i~~aa~~ClvkIm~Ly----- 248 (859)
T KOG1241|consen 175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP-DEEIQVAAFQCLVKIMSLY----- 248 (859)
T ss_pred HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC-cHHHHHHHHHHHHHHHHHH-----
Confidence 666666654 35689999999988777765544322 4566777777777776 8999999999999998764
Q ss_pred HhHHHhhHH-HHHHHHHHHHhcCChHHHHHHHHHHHHHHccchH-------H------------HHHhHHHHHHHHHHhh
Q 001791 222 RDRFQDLLP-LMMRTLTESLNNGNEATAQEALELLIELAGTEPR-------F------------LRRQLVDVVGSMLQIA 281 (1012)
Q Consensus 222 ~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~-------~------------~~~~~~~i~~~l~~~~ 281 (1012)
.+....++. .++..-.....++++++...+++.++.+++..-+ . ....++.+++.+++.+
T Consensus 249 Y~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L 328 (859)
T KOG1241|consen 249 YEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELL 328 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHH
Confidence 222222222 2444444556688999999999999977643311 1 1122346777777766
Q ss_pred ccCC-----cchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchh
Q 001791 282 EAES-----LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYS 356 (1012)
Q Consensus 282 ~~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~ 356 (1012)
...+ .+......|-.||.-+++..+ ...++.++|.+-+.+ ..|+|. .+.
T Consensus 329 ~kqde~~d~DdWnp~kAAg~CL~l~A~~~~---------D~Iv~~Vl~Fiee~i----~~pdwr-------------~re 382 (859)
T KOG1241|consen 329 TKQDEDDDDDDWNPAKAAGVCLMLFAQCVG---------DDIVPHVLPFIEENI----QNPDWR-------------NRE 382 (859)
T ss_pred HhCCCCcccccCcHHHHHHHHHHHHHHHhc---------ccchhhhHHHHHHhc----CCcchh-------------hhh
Confidence 4322 223355556566666555311 112344455443333 334454 334
Q ss_pred hHHHHHHHHHHHcCC---CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHH--HHhHHHHHHHHHhhCCCCC
Q 001791 357 VGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM--VKNLEQVLSMVLNSFRDPH 431 (1012)
Q Consensus 357 ~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~d~~ 431 (1012)
++...++.+...-.+ ..+.+..+|.+...+.|+.-.+|.++.+.||.+++.+++.+ ..++..+++.+..+++| +
T Consensus 383 aavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-e 461 (859)
T KOG1241|consen 383 AAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-E 461 (859)
T ss_pred HHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-C
Confidence 555555444321111 24556677888888889888888999999999999988644 35678889999999975 6
Q ss_pred hhHHHHHHHHHHHhhhhhchhH--------HhhhhhhhHHHHHhhcCC--CCChHHHHHHHHHHHHHhhcCCc-------
Q 001791 432 PRVRWAAINAIGQLSTDLGPDL--------QNQFHPQVLPALAGAMDD--FQNPRVQAHAASAVLNFSENCTP------- 494 (1012)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~--------~~~~~~~il~~l~~~l~~--~~~~~v~~~a~~al~~l~~~~~~------- 494 (1012)
|+|-..+||++..+++...... ..++++.++..|++.-+- ....+.|.+|..+|..+++....
T Consensus 462 Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~ 541 (859)
T KOG1241|consen 462 PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ 541 (859)
T ss_pred chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999997664321 134667777777765432 12456788888888887765431
Q ss_pred ----------------------------------------------ccccCcHHHHHHHHHHHhhc-CChhHHHHHHHHH
Q 001791 495 ----------------------------------------------EILTPYLDGIVSKLLVLLQN-GKQMVQEGALTAL 527 (1012)
Q Consensus 495 ----------------------------------------------~~l~~~~~~il~~l~~~l~~-~~~~v~~~a~~~l 527 (1012)
..+.++.+.+|..+++.+++ .+..+.+.++-++
T Consensus 542 ~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV 621 (859)
T KOG1241|consen 542 KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAV 621 (859)
T ss_pred HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 12345566666666666666 3455888999999
Q ss_pred HHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHH-hcCCCCCC
Q 001791 528 ASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL-QGSQMETD 606 (1012)
Q Consensus 528 ~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l-~~~~~~~~ 606 (1012)
+.++...|..|..|.+.+.|+|...+++. .+..+-..|+..+|.++++++ +.|.||++.+|..|++. .++.. .
T Consensus 622 ~tl~~~Lg~~F~kym~~f~pyL~~gL~n~---~e~qVc~~aVglVgdl~raL~-~~i~py~d~~mt~Lvq~Lss~~~--h 695 (859)
T KOG1241|consen 622 STLAESLGKGFAKYMPAFKPYLLMGLSNF---QEYQVCAAAVGLVGDLARALE-DDILPYCDELMTVLVQCLSSPNL--H 695 (859)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHccCccc--c
Confidence 99999999999999999999999999764 345577778999999999999 78999999999999984 44433 3
Q ss_pred CchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHH
Q 001791 607 DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLE 686 (1012)
Q Consensus 607 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 686 (1012)
+.+++.++.+|+.++...|.+|.||+..+++.+-+.-+..++. .++++.+|. .+
T Consensus 696 R~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~-------------~~~~~~dYv-------------d~ 749 (859)
T KOG1241|consen 696 RNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDP-------------ADDSMVDYV-------------DE 749 (859)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCC-------------CcccHHHHH-------------HH
Confidence 5689999999999999999999999999999876665332211 034444443 23
Q ss_pred HHHHHHHHHHHHHHHhhh-----cccccHHHHHHHhccccCccC-CHHHHHHHHHhHHHHHHHH
Q 001791 687 EKATACNMLCCYADELKE-----GFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSA 744 (1012)
Q Consensus 687 ~k~~a~~~l~~i~~~~~~-----~~~p~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~ 744 (1012)
.|+.++.+...++..++. .+.||++.++..+-+.-.+.. ++.+-.+|+..+|+|+...
T Consensus 750 LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~f 813 (859)
T KOG1241|consen 750 LREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMF 813 (859)
T ss_pred HHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHc
Confidence 466777778888777762 467999999998876655432 3667888889999998876
No 12
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.96 E-value=2.4e-23 Score=224.35 Aligned_cols=598 Identities=17% Similarity=0.218 Sum_probs=388.7
Q ss_pred CChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC--
Q 001791 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-- 95 (1012)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~-- 95 (1012)
++.+.+..+|.+++|+|+++|.+|+.+|+++.. .+ +|-..|.++..+ ..+-..||.|.+.|++.+.++ |..
T Consensus 1 ~~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~-~~-~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~h----W~~~~ 74 (1005)
T KOG2274|consen 1 QVKQAIIELLSGSLSADQNVRSQAETQLKQLEL-TE-GFGVALAEVAANKDASLPLRQIALVLLKRYIEKH----WSPNF 74 (1005)
T ss_pred CcHHHHHHHHHhhcCCChhHHHHHHHHHhcccc-ch-HHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHh----CCChH
Confidence 356788999999999999999999999999988 34 477899999887 467889999999999999998 553
Q ss_pred --------CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHH
Q 001791 96 --------LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIF 167 (1012)
Q Consensus 96 --------l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l 167 (1012)
-+.+.|..||..|++.+-+ ++.++|+.++.+++.|+..++| +.||+++|.+..++.+.+.+..+++++++
T Consensus 75 E~fr~~~~~~e~~K~~IRe~Ll~~l~~-sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL 152 (1005)
T KOG2274|consen 75 EAFRYPLIVSEEVKALIREQLLNLLDD-SNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVL 152 (1005)
T ss_pred hhccCCCcccHHHHHHHHHHHHhhhhc-cccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHH
Confidence 3577899999999999984 8999999999999999999999 79999999999999999999999999999
Q ss_pred HHhhhhHhh-hc----cccHHHHHHHHHHhhcCCCChHHHHHHH--HHHHHHHHhhcCc------chHhHHHhhHHHHHH
Q 001791 168 AQLSQYIGD-TL----TPHLKHLHAVFLNCLTNSNNPDVKIAAL--NAVINFIQCLTSS------ADRDRFQDLLPLMMR 234 (1012)
Q Consensus 168 ~~l~~~~~~-~~----~~~~~~l~~~l~~~l~~~~~~~vr~~a~--~~l~~~~~~~~~~------~~~~~~~~~~~~ll~ 234 (1012)
..+...... .. ...++.+...+. ..... +...|..++ +.+.++...+... .....+...++.+++
T Consensus 153 ~el~~ev~~ee~~~~~~~~l~~m~~~f~-~~~~~-s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~ 230 (1005)
T KOG2274|consen 153 AELSDEVDVEEMFFVGPVSLAEMYRIFA-LTIVY-SIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMD 230 (1005)
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhhh-hcccc-chhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887642 21 112333333322 12222 334443333 4444444433211 012334556667777
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhcc--------------------CCcch---
Q 001791 235 TLTESLNNG---NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEA--------------------ESLEE--- 288 (1012)
Q Consensus 235 ~l~~~l~~~---~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~--------------------~~~~~--- 288 (1012)
.+.+.++-+ +...+...++++..+.+..|..+.+++..+++..++.... .+.++
T Consensus 231 ~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~ 310 (1005)
T KOG2274|consen 231 ILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEK 310 (1005)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhh
Confidence 766665432 4467888999999999999999888887776666554310 01111
Q ss_pred ---HHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCC-CCccccCCCC---CCccccCCcchhhHHHH
Q 001791 289 ---GTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE-DDPLWHSAET---EDEDAGESSNYSVGQEC 361 (1012)
Q Consensus 289 ---~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~---~~ed~~~~~~~~~a~~~ 361 (1012)
......++++..++..... .+..+.-+..+++.+...++-.+ .-..|..+.. .+|+++ ...+..+...
T Consensus 311 ~~~~l~i~i~eF~s~i~t~~~~----~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~-~~~~~~~rd~ 385 (1005)
T KOG2274|consen 311 SVETLVIQIVEFLSTIVTNRFL----SKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDG-YTARISVRDL 385 (1005)
T ss_pred ChHHhhhhHHHHHHHHHHHHHH----HHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCC-chhhhhHHHH
Confidence 1234566777777764211 11111122333444333333221 1123544332 122222 2334444455
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHhh----------CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CC
Q 001791 362 LDRLAIALGGNTIVPVASEQLPAYL----------AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DP 430 (1012)
Q Consensus 362 l~~l~~~~~~~~~~~~~~~~l~~~l----------~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~ 430 (1012)
+-.+...+|.. ....+.....+.+ ...+|+..++.+.+......+. .....+..++..+..++. ..
T Consensus 386 ~~~v~~~f~~~-~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e 462 (1005)
T KOG2274|consen 386 LLEVITTFGNE-GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQE 462 (1005)
T ss_pred HHHHHHhccch-hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhccccc
Confidence 55555555532 2222333322211 2246888888888777766432 223455566666666664 55
Q ss_pred ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHH
Q 001791 431 HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1012)
Q Consensus 431 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~ 510 (1012)
.|..-..++++++.++....-. .+....++...+..+.-+..+.++.+|+.++...+ ++..+.++.|.++..|.+
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~--~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~q 537 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVIN--PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQ 537 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHH
Confidence 7777779999999988874322 24566677777776654356778888888877776 566788999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHH
Q 001791 511 LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQ 590 (1012)
Q Consensus 511 ~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~ 590 (1012)
+....+..+.....+++..++..-++.-...-..+.|.++.++.+..++ ..+-..+.+++-.+... .....|+...
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~D--P~V~~~~qd~f~el~q~--~~~~g~m~e~ 613 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSED--PQVASLAQDLFEELLQI--AANYGPMQER 613 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCC--chHHHHHHHHHHHHHHH--HHhhcchHHH
Confidence 9998888888888899988887655432334456778888877654432 24555566666655542 2356777888
Q ss_pred HHHHHHHHhc-CCCCCCCchhHHHHHHHHHHHHHhcCCccc-chhhhhHHHHHHh
Q 001791 591 VMEVLMSLQG-SQMETDDPTTSYMLQAWARLCKCLGQDFLP-YMSVVMPPLLQSA 643 (1012)
Q Consensus 591 i~~~l~~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~i~~~ll~~~ 643 (1012)
.++.+++..+ +.-.........++..+..+.+..+..+.. .+....|.+.++.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t 668 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT 668 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe
Confidence 8888888433 221112345566777777777766655432 3344555555554
No 13
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-22 Score=214.85 Aligned_cols=517 Identities=14% Similarity=0.178 Sum_probs=318.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc-----CCC
Q 001791 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP-----RLS 97 (1012)
Q Consensus 24 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~-----~l~ 97 (1012)
+.++|+...|+|..+++-||++|+++.+ .|++| ..|..++.+ +.+-.+|-+|++++||-+.+. |. .++
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEt-qPGF~-~~L~sI~l~~t~dv~vRWmAviyfKNgIdry----WR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWET-QPGFF-SKLYSIFLSKTNDVSVRWMAVIYFKNGIDRY----WRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhcc-CCcHH-HHHHHHHhccccceeeeeehhhhHhcchhHH----hhcCCcccCC
Confidence 4678999999999999999999999999 68866 888888876 678999999999999999987 65 489
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC----CHHHHHHHHHHHHHhhhh
Q 001791 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD----SVKLQESAFLIFAQLSQY 173 (1012)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~----~~~~r~~al~~l~~l~~~ 173 (1012)
+|+|..||..++.... +++..+....|..+++||+.++| ..||+++|.|.+.+++. +....+..+..+..+.+.
T Consensus 76 ~EEK~~iR~~Ll~~~~-E~~nQlaiQ~AvlisrIARlDyP-reWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~ 153 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSD-EENNQLAIQNAVLISRIARLDYP-REWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKA 153 (978)
T ss_pred HHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHhcCCC-ccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 58899999999999999999999 69999999999998876 777788888888888876
Q ss_pred Hhh--------hccccHHHHHHHHHHhh------------cCCC------ChHHHHHHHHHHHHHHHh-hcCcchHhHHH
Q 001791 174 IGD--------TLTPHLKHLHAVFLNCL------------TNSN------NPDVKIAALNAVINFIQC-LTSSADRDRFQ 226 (1012)
Q Consensus 174 ~~~--------~~~~~~~~l~~~l~~~l------------~~~~------~~~vr~~a~~~l~~~~~~-~~~~~~~~~~~ 226 (1012)
+.. .+....+.+++++...+ ++.. .-++-.-+++++..++.. +.++...+ +.
T Consensus 154 Lat~RL~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~ss~~ea~~LsalQ~s~~~lk~lRrlvv~G~~~P~kse-~~ 232 (978)
T KOG1993|consen 154 LATKRLLADRKAFYELAPEILTILAPILWSSLTMMFLQSVSSIKEATLLSALQRSYLTLKVLRRLVVFGFQNPSKSE-FF 232 (978)
T ss_pred HHHhHHhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhccCCcchhh-HH
Confidence 542 12223334444222221 1110 112223455666655543 22222222 33
Q ss_pred hhHHHHHHHHHH----HHhcC----ChHHHHHH----HHHHHHHHccchHHHHH--hHHHHHHHHHHhhcc---------
Q 001791 227 DLLPLMMRTLTE----SLNNG----NEATAQEA----LELLIELAGTEPRFLRR--QLVDVVGSMLQIAEA--------- 283 (1012)
Q Consensus 227 ~~~~~ll~~l~~----~l~~~----~~~~~~~~----~~~L~~l~~~~~~~~~~--~~~~i~~~l~~~~~~--------- 283 (1012)
+-++.+++.=.. .+... ..+..... .+++..+....|-.|.. ..+..+++.+.....
T Consensus 233 eRl~~F~e~~~~~~~~~~s~~~~~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~ 312 (978)
T KOG1993|consen 233 ERLLQFLELHQRKLLSSLSTGTQSVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQIS 312 (978)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhhhcccchhcccc
Confidence 334444443111 11111 11112222 34444555555544443 233334433333221
Q ss_pred --CCcchHHHHHHHHHHHHHHHhhhccc----h-h----------hhc------chhhHHHHHHHHHHhh--ccCCCCcc
Q 001791 284 --ESLEEGTRHLAIEFVITLAEARERAP----G-M----------MRK------LPQFINRLFAILMSML--LDIEDDPL 338 (1012)
Q Consensus 284 --~~~~~~vr~~a~~~l~~l~~~~~~~~----~-~----------~~~------~~~~~~~l~~~l~~~l--~~~~~~~~ 338 (1012)
.+.-++...+++..+..+...+.+.+ + . ..+ ..+-+..+...++.+. ...++-++
T Consensus 313 ~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEe 392 (978)
T KOG1993|consen 313 GHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQKIYNSFLTDNRITNLCDLLVTHYFLLTEEELEE 392 (978)
T ss_pred cccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 11223344555555554332211111 0 0 000 0122333444444332 12334456
Q ss_pred ccCCCCC--Ccc---ccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC---------ChhHHHHHHHHHHHH
Q 001791 339 WHSAETE--DED---AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP---------EWQKHHAALIALAQI 404 (1012)
Q Consensus 339 ~~~~~~~--~ed---~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~r~aal~~l~~l 404 (1012)
|..++++ .|+ +-+...+.+|..+...+...++ +-+.|.++..+.+..+-. ..-.+.|...++|..
T Consensus 393 W~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~ 471 (978)
T KOG1993|consen 393 WTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLA 471 (978)
T ss_pred HhcChHHhhhhcccccceeccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHH
Confidence 7766542 111 1234556778888777777776 566777777775443321 233455666677766
Q ss_pred HhhcHHHHHHhHHHHHHHHHhhCC---CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHH
Q 001791 405 AEGCAKVMVKNLEQVLSMVLNSFR---DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1012)
Q Consensus 405 ~~~~~~~~~~~l~~i~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1012)
+....+.+ ++-.-+...+++-+. +....+|+..+|.+|..... ....+.-+.+...+++.++|.++..|+.++
T Consensus 472 a~~l~~~~-dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsv---q~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt 547 (978)
T KOG1993|consen 472 AYELSNIL-DFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSV---QQKLELKPLLYCAFLNLLQDQNDLVVRLTT 547 (978)
T ss_pred HHHHHhcC-CHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhhe---echHhHHHHHHHHHHHhcCccccceeehHH
Confidence 65544311 111222233333332 23455789999999987763 222345566777788888884477899999
Q ss_pred HHHHHHHhhcC--CcccccCcHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHh
Q 001791 482 ASAVLNFSENC--TPEILTPYLDGIVSKLLVLLQNGK-QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1012)
Q Consensus 482 ~~al~~l~~~~--~~~~l~~~~~~il~~l~~~l~~~~-~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~ 554 (1012)
+.++.-+++.. .++.+.||++.+...+.++++... .+.|..++..++.++..+++.+.||...++..+...|.
T Consensus 548 ~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe 623 (978)
T KOG1993|consen 548 ARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWE 623 (978)
T ss_pred HHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99999999854 567788999999998888876543 45666777777777777777666776666666666654
No 14
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.94 E-value=4.2e-22 Score=208.94 Aligned_cols=673 Identities=16% Similarity=0.200 Sum_probs=444.0
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccc
Q 001791 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1012)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~ 262 (1012)
..++..++.. +++ .+..|..+++.|..=...+. ....|..++|.+++.- + +...|+..+.++..+....
T Consensus 363 r~i~~llLkv-KNG-~ppmRk~~LR~ltdkar~~g---a~~lfnqiLpllMs~t---L---eDqerhllVkvidriLykl 431 (1172)
T KOG0213|consen 363 RKIMRLLLKV-KNG-TPPMRKSALRILTDKARNFG---AGPLFNQILPLLMSPT---L---EDQERHLLVKVIDRILYKL 431 (1172)
T ss_pred HHHHHHHHhh-cCC-CchhHHHHHHHHHHHHHhhc---cHHHHHHHHHHHcCcc---c---cchhhhhHHHHHHHHHHhh
Confidence 3445555433 565 78899999998887666542 1223444444333221 1 4456777788888777666
Q ss_pred hHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCC
Q 001791 263 PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1012)
Q Consensus 263 ~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1012)
.....||+..|+-.+-..+ -+.+-..|...-+++..++... .+...+..+-| +.+
T Consensus 432 DdlvrpYVhkILvViepll--ided~yar~egreIisnLakaa--------Gla~mistmrp-------Did-------- 486 (1172)
T KOG0213|consen 432 DDLVRPYVHKILVVIEPLL--IDEDYYARVEGREIISNLAKAA--------GLATMISTMRP-------DID-------- 486 (1172)
T ss_pred cccchhceeeeEEEeecce--ecchHHHhhchHHHHHHHHHHh--------hhHHHHHhhcC-------Ccc--------
Confidence 6666666665432211111 2334445666667788777631 11111111111 010
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH
Q 001791 343 ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLS 421 (1012)
Q Consensus 343 ~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~ 421 (1012)
..+.-.+.....++..++.++| .+.++|++.....|. +|+.|+.++.+..+++.-.+-...+|+..++.
T Consensus 487 ------n~deYVRnttarafavvasalg----ip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ 556 (1172)
T KOG0213|consen 487 ------NKDEYVRNTTARAFAVVASALG----IPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVK 556 (1172)
T ss_pred ------cccHHHHHHHHHHHHHHHHHhC----cHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHH
Confidence 0111245667778888888887 678899999998885 99999999999999998777777899999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcH
Q 001791 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL 501 (1012)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~ 501 (1012)
.+-.++.|.+..||..++.+++.+++...|.- ...++.++..|.+.+.. .-...-.+-+.|++.++.....+.-.-|.
T Consensus 557 ii~~gl~De~qkVR~itAlalsalaeaa~Pyg-ie~fDsVlkpLwkgir~-hrgk~laafLkAigyliplmd~eya~yyT 634 (1172)
T KOG0213|consen 557 IIEHGLKDEQQKVRTITALALSALAEAATPYG-IEQFDSVLKPLWKGIRQ-HRGKELAAFLKAIGYLIPLMDAEYASYYT 634 (1172)
T ss_pred HHHHhhcccchhhhhHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHH-ccChHHHHHHHHHhhccccccHHHHHHhH
Confidence 99999999999999999999999999887765 57788999999988876 33344455667788887766654333455
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH-hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhC
Q 001791 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1012)
Q Consensus 502 ~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1012)
..+|-.+..-+++++.+.++..+..+..++...|-. ..|. ..++|.++..+......-+...-.+.+++-..++..+|
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG 713 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVG 713 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhC
Confidence 678888888899999999999999999998876632 1232 45666555544332111122223345677777888888
Q ss_pred hhhhhhhHHHHHHH-HHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCC-ccc-chhhhhHHHHHHhccCCCccccCCCCC
Q 001791 581 KDKFRDDAKQVMEV-LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD-FLP-YMSVVMPPLLQSAQLKPDVTITSADSD 657 (1012)
Q Consensus 581 ~~~~~~~~~~i~~~-l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~-~l~~i~~~ll~~~~~~~~~~~~~~~~~ 657 (1012)
.. +++.- +..+.+ +....|.-...+...+...+|.. +.. .-+.++..++.+++-+..
T Consensus 714 ~~-------~~v~R~v~~lkd----e~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt--------- 773 (1172)
T KOG0213|consen 714 SD-------PIVSRVVLDLKD----EPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTT--------- 773 (1172)
T ss_pred ch-------HHHHHHhhhhcc----ccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhccc---------
Confidence 43 22222 222222 23446666677777777666643 443 334566666666642210
Q ss_pred ccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhH
Q 001791 658 NEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAM 737 (1012)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l 737 (1012)
++ ..-+..++.++..++....||+++++..++..++.. ...+|+.|++++
T Consensus 774 ------~d-----------------------~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnk-sa~vRqqaadli 823 (1172)
T KOG0213|consen 774 ------ED-----------------------SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNK-SAKVRQQAADLI 823 (1172)
T ss_pred ------ch-----------------------hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCC-ChhHHHHHHHHH
Confidence 00 112457888999999999999999999999999864 889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Q 001791 738 PELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPL-LDEGQVRSIVDEIK 816 (1012)
Q Consensus 738 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~~~~~~l~ 816 (1012)
+.++.....+ ..+..-..+.. .|.+.+ .+.+++++..++.++..+....|.. +.+ -++.+++.+.
T Consensus 824 s~la~Vlktc---------~ee~~m~~lGv---vLyEyl-geeypEvLgsILgAikaI~nvigm~km~p-Pi~dllPrlt 889 (1172)
T KOG0213|consen 824 SSLAKVLKTC---------GEEKLMGHLGV---VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTP-PIKDLLPRLT 889 (1172)
T ss_pred HHHHHHHHhc---------cHHHHHHHhhH---HHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCC-Chhhhcccch
Confidence 9998876322 12222222222 234454 4458899999999999888887764 333 3678888888
Q ss_pred HHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccch-hhHHHHHHhHhhhhcCCCC
Q 001791 817 QVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKT 895 (1012)
Q Consensus 817 ~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~~~~~ 895 (1012)
++|++.++.+ .++..++++.++...++.+. .-|-.+.=-++..+ ++..
T Consensus 890 PILknrheKV------------------------------qen~IdLvg~IadrgpE~v~aREWMRIcfeLlelL-kahk 938 (1172)
T KOG0213|consen 890 PILKNRHEKV------------------------------QENCIDLVGTIADRGPEYVSAREWMRICFELLELL-KAHK 938 (1172)
T ss_pred HhhhhhHHHH------------------------------HHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHH-HHHH
Confidence 8888865543 33566666666666554321 11111111122222 1223
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHh-h---------------------------hHhHHHHHHhhccCCChhHHHHHHHH
Q 001791 896 AEERRIAICIFDDVAEQCREA-ALK-Y---------------------------YETYLPFLLEACNDENQDVRQAAVYG 946 (1012)
Q Consensus 896 ~~~~~~~~~~l~~l~~~~~~~-~~~-~---------------------------~~~l~~~~l~~l~~~~~~vr~~a~~~ 946 (1012)
-+.|..+..++|++.+..|++ +.. . .=.++|.+++--+.++..|.+..+.+
T Consensus 939 K~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 939 KEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKA 1018 (1172)
T ss_pred HHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHH
Confidence 455666666666666665542 100 0 01367777777777888999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhHccCCC
Q 001791 947 LGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDSI 1005 (1012)
Q Consensus 947 lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~~~p~~~ 1005 (1012)
|..+.++.++.-.+|+-.++|.|.+.+++. +...|+-|+++|-+|....|...
T Consensus 1019 lsf~FeyigemskdYiyav~PlleDAlmDr------D~vhRqta~~~I~Hl~Lg~~g~g 1071 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIYAVTPLLEDALMDR------DLVHRQTAMNVIKHLALGVPGTG 1071 (1172)
T ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHhhccc------cHHHHHHHHHHHHHHhcCCCCcC
Confidence 999999999998999999999999999876 57889999999999988776643
No 15
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.9e-19 Score=187.48 Aligned_cols=512 Identities=15% Similarity=0.149 Sum_probs=328.4
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC----
Q 001791 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR---- 95 (1012)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~---- 95 (1012)
.+++.+.+..+.+.|+..|..||+.|+++.+ .|+ |+..+++++.+ +.+..+|+.|++++||.+.+. |..
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leK-qPg-Fv~all~i~s~de~~lnvklsAaIYfKNkI~rs----Wss~~d~ 75 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEK-QPG-FVMALLHICSKDEGDLNVKLSAAIYFKNKIIRS----WSSKRDD 75 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhc-CCc-HHHHHHHHHhhccCCchhhHHHHHHHhhhhhhh----hhhcccC
Confidence 4688999999999999999999999999999 686 67999999987 578999999999999999998 775
Q ss_pred -CCHHHHHHHHHHHHH----HHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001791 96 -LSLHTQSSLKSMLLQ----SIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1012)
Q Consensus 96 -l~~~~~~~i~~~ll~----~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1012)
.+++.+..+|..|++ .+.. .+...|.+.-.++..|...++|.+.|+ +.|...+++.+++....-.++.++..+
T Consensus 76 ~i~~Dek~e~K~~lienil~v~l~-sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~el 153 (970)
T COG5656 76 GIKADEKSEAKKYLIENILDVFLY-SPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEEL 153 (970)
T ss_pred CCCCcccHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHH
Confidence 233444444544444 4443 566778788888888899999988999 999999999999999999999999999
Q ss_pred hhhHh-------hhccccHHHHHHHHHHh---hcCCCC---hHHHHHHHHHHHHHHHh-hcCc-chHhHHHhhHHHHHHH
Q 001791 171 SQYIG-------DTLTPHLKHLHAVFLNC---LTNSNN---PDVKIAALNAVINFIQC-LTSS-ADRDRFQDLLPLMMRT 235 (1012)
Q Consensus 171 ~~~~~-------~~~~~~~~~l~~~l~~~---l~~~~~---~~vr~~a~~~l~~~~~~-~~~~-~~~~~~~~~~~~ll~~ 235 (1012)
++... .++.+....++|++.+. +.+.++ .++-.-.++.+...+.. ++.. ...+.+..++...+..
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 97531 12334455556666543 222212 23333344433333221 1100 0223344444444444
Q ss_pred HHHHHh----cCChHHH---------HHHHHHHHHHHccchHH--------HH----HhHHHHHHHHHHhh---ccCCc-
Q 001791 236 LTESLN----NGNEATA---------QEALELLIELAGTEPRF--------LR----RQLVDVVGSMLQIA---EAESL- 286 (1012)
Q Consensus 236 l~~~l~----~~~~~~~---------~~~~~~L~~l~~~~~~~--------~~----~~~~~i~~~l~~~~---~~~~~- 286 (1012)
+..-+. +-++++| +.|+..|.++..+|.+. +. ..++.+....++.. ++...
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLW 313 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLW 313 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCee
Confidence 332111 1244443 45666777766655321 11 12333333333222 22110
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhccCCCC-ccccCCCCC------CccccCCcchhhH
Q 001791 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIEDD-PLWHSAETE------DEDAGESSNYSVG 358 (1012)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~-~~~~~~~~~------~ed~~~~~~~~~a 358 (1012)
-.+.....+.++...|.. ....++...|+++-++.. ++.+++-.+++ +.|..+.++ |--+...++.-++
T Consensus 314 lsd~~LYfi~~Fve~cv~---~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaa 390 (970)
T COG5656 314 LSDIELYFIDFFVELCVD---ADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAA 390 (970)
T ss_pred cchHHHHHHHHHHHHHhh---hHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHH
Confidence 112233445555554442 222455566666666554 45555544332 234433221 0001122333344
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhC-----C---CChhHHHHHHHHHHHHHhhcH--HHHHHhHHH-HHHHHHhhC
Q 001791 359 QECLDRLAIALGGNTIVPVASEQLPAYLA-----A---PEWQKHHAALIALAQIAEGCA--KVMVKNLEQ-VLSMVLNSF 427 (1012)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-----~---~~~~~r~aal~~l~~l~~~~~--~~~~~~l~~-i~~~l~~~l 427 (1012)
..++-.....-+ +..+..+++++...+. + .+.+..++|+..++.+..-.. ......+.. +++.+.+.+
T Consensus 391 l~fl~~~~sKrk-e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f 469 (970)
T COG5656 391 LFFLIISKSKRK-EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF 469 (970)
T ss_pred HHHHHHHhcccc-hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh
Confidence 455554444443 5666667777776662 1 457888999999999887222 233334443 568899999
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC-cccccCcHHHHHH
Q 001791 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-PEILTPYLDGIVS 506 (1012)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~-~~~l~~~~~~il~ 506 (1012)
+++....|..||..++.+.+.++.. ....+++...++++++ ++-.|+..|..|+..++.+-. .+.+..+.+.+|+
T Consensus 470 ~s~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tme 545 (970)
T COG5656 470 RSNYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNEQSHEKFSAHVPETME 545 (970)
T ss_pred cCcccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHH
Confidence 9999999999999999998877653 4667888899999999 888899999999999987642 2456788899999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHH
Q 001791 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKA 551 (1012)
Q Consensus 507 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~ 551 (1012)
.|+.+-+.-+..+ .-.++..++....+++.||.++++..|.+
T Consensus 546 kLLsLSn~feiD~---LS~vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 546 KLLSLSNTFEIDP---LSMVMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HHHHhcccccchH---HHHHHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 9988766554433 33566677888888888998888777665
No 16
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.92 E-value=2.6e-18 Score=180.76 Aligned_cols=685 Identities=16% Similarity=0.224 Sum_probs=431.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc-CchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCc--c-----
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ-DPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFL--W----- 93 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~--w----- 93 (1012)
.+..+|-...+..+.-|+.|-.+|..=... -++-....++-++-+ +-+..-||+-...+-+++..-+.-. +
T Consensus 364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL 443 (1172)
T KOG0213|consen 364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL 443 (1172)
T ss_pred HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence 556667777788889999999998753321 111122344444444 5566778888777777665531000 0
Q ss_pred ---c--CCCHHHHHH-----HHHHHHHH--Hh----------hcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHh
Q 001791 94 ---P--RLSLHTQSS-----LKSMLLQS--IQ----------LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC 151 (1012)
Q Consensus 94 ---~--~l~~~~~~~-----i~~~ll~~--l~----------~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~ 151 (1012)
. .++++.+.. |.+.|... |. +..++-||+..+.+++.+++.. ..|.++|+|...
T Consensus 444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasal----gip~llpfLkav 519 (1172)
T KOG0213|consen 444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASAL----GIPALLPFLKAV 519 (1172)
T ss_pred EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHh----CcHHHHHHHHHH
Confidence 0 123333322 22222211 11 1257789999999999999874 679999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHH
Q 001791 152 VSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (1012)
Q Consensus 152 ~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (1012)
..|. +|+.|+.++.+...++..++....+++..++.++..++.|. +..||.-+..++..+++.. .+...+.|+
T Consensus 520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De-~qkVR~itAlalsalaeaa-~Pygie~fD---- 593 (1172)
T KOG0213|consen 520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDE-QQKVRTITALALSALAEAA-TPYGIEQFD---- 593 (1172)
T ss_pred hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhccc-chhhhhHHHHHHHHHHHhc-CCcchHHHH----
Confidence 9887 89999999999999999999988899999999999999998 8999999999999998864 222344444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHH-hHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccc
Q 001791 231 LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR-QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (1012)
Q Consensus 231 ~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~-~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 309 (1012)
.+++.|+..+..........-++.++.++-........ |...++-.+.+-. ..++++++...+..+..+|...+..|
T Consensus 594 sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf--~sPDeemkkivLKVv~qcc~t~Gv~~ 671 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREF--GSPDEEMKKIVLKVVKQCCATDGVEP 671 (1172)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHhcccCCCH
Confidence 46666666554333333333444444444322222222 2334555555444 45678888889999999998654444
Q ss_pred hhhhcchhhHHHHHHHHHHhh-----------------------ccCCCCccccCCCCCCccccCCcchhhHHHHHHHHH
Q 001791 310 GMMRKLPQFINRLFAILMSML-----------------------LDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1012)
Q Consensus 310 ~~~~~~~~~~~~l~~~l~~~l-----------------------~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (1012)
...+ ..++|.++... .....++-.. +.-++.-++....++.....++.+.
T Consensus 672 ~y~r------~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~-R~v~~lkde~e~yrkm~~etv~ri~ 744 (1172)
T KOG0213|consen 672 AYIR------FDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS-RVVLDLKDEPEQYRKMVAETVSRIV 744 (1172)
T ss_pred HHHh------hhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH-HHhhhhccccHHHHHHHHHHHHHHH
Confidence 3221 12222222211 1000000000 0000000001123455666666666
Q ss_pred HHcCCCcchHH----HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHH
Q 001791 367 IALGGNTIVPV----ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAI 442 (1012)
Q Consensus 367 ~~~~~~~~~~~----~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l 442 (1012)
..+|..++-.. ++.-+.-.++.++-... ..+..||.++......+++|+++|+..++..|+++.+.||..|+..+
T Consensus 745 ~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadli 823 (1172)
T KOG0213|consen 745 GRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLI 823 (1172)
T ss_pred hccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 66664433332 22223233333222222 45667888888888788899999999999999999999999999999
Q ss_pred HHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHH
Q 001791 443 GQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1012)
Q Consensus 443 ~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~ 522 (1012)
+.++..+...--.+.+..+=-.|++.|.. ..|.|-...+.|+..+....+...+.|-+.+++|.|..+|++.+.++.+.
T Consensus 824 s~la~Vlktc~ee~~m~~lGvvLyEylge-eypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen 902 (1172)
T KOG0213|consen 824 SSLAKVLKTCGEEKLMGHLGVVLYEYLGE-EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQEN 902 (1172)
T ss_pred HHHHHHHHhccHHHHHHHhhHHHHHhcCc-ccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHH
Confidence 99988775432233455555667888988 88999999999999999888766677888999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhH--hhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-Hh
Q 001791 523 ALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQ 599 (1012)
Q Consensus 523 a~~~l~~l~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~ 599 (1012)
.+..+|.++...++... .+...... |++.+.. -...+|..|.+++|.|++++|+. +++..|++ +.
T Consensus 903 ~IdLvg~IadrgpE~v~aREWMRIcfe-LlelLka----hkK~iRRaa~nTfG~IakaIGPq-------dVLatLlnnLk 970 (1172)
T KOG0213|consen 903 CIDLVGTIADRGPEYVSAREWMRICFE-LLELLKA----HKKEIRRAAVNTFGYIAKAIGPQ-------DVLATLLNNLK 970 (1172)
T ss_pred HHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHHH----HHHHHHHHHHhhhhHHHHhcCHH-------HHHHHHHhcch
Confidence 99999999988765321 22222222 2233332 22357888999999999999975 45555555 21
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceee
Q 001791 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIG 679 (1012)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1012)
.+ +...|....-+++-+++.|| || .++|.|++-... |+..
T Consensus 971 vq----eRq~RvcTtvaIaIVaE~c~----pF--tVLPalmneYrt-Pe~n----------------------------- 1010 (1172)
T KOG0213|consen 971 VQ----ERQNRVCTTVAIAIVAETCG----PF--TVLPALMNEYRT-PEAN----------------------------- 1010 (1172)
T ss_pred HH----HHHhchhhhhhhhhhhhhcC----ch--hhhHHHHhhccC-chhH-----------------------------
Confidence 10 00111111113343444443 33 456666654321 2111
Q ss_pred ecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHH
Q 001791 680 IKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNES 759 (1012)
Q Consensus 680 v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 759 (1012)
| +..-+++++.+....++.-..|+-.+.+.+...+.+. +..-|+.|..++.+++-.+ ++....+
T Consensus 1011 V-------QnGVLkalsf~FeyigemskdYiyav~PlleDAlmDr-D~vhRqta~~~I~Hl~Lg~--------~g~g~ed 1074 (1172)
T KOG0213|consen 1011 V-------QNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDR-DLVHRQTAMNVIKHLALGV--------PGTGCED 1074 (1172)
T ss_pred H-------HHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccc-cHHHHHHHHHHHHHHhcCC--------CCcCcHH
Confidence 1 2233456666666666655667777777777776654 7778999999888886543 3444667
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCC
Q 001791 760 YVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1012)
Q Consensus 760 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1012)
.+-++++.+.|.+++ ..+.+.+++..++..+-...|+
T Consensus 1075 a~iHLLN~iWpNIle-----~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1075 ALIHLLNLIWPNILE-----TSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HHHHHHHHhhhhhcC-----CChHHHHHHHHHHHHHHHHhch
Confidence 777778777776543 3677777777777766665555
No 17
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.91 E-value=4.7e-17 Score=166.76 Aligned_cols=753 Identities=13% Similarity=0.148 Sum_probs=443.5
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhcccCC------CC
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPE------NG 140 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~~------~~ 140 (1012)
++|+++|.-|...|+++-+-+ + ......+.+.|.++ ....+|-.++.++..-...--|. ..
T Consensus 16 spD~n~rl~aE~ql~~l~~~d----F--------~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qr 83 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGD----F--------EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQR 83 (858)
T ss_pred CCCCCccccHHHHHHHhcccc----H--------HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHh
Confidence 678999999999888875432 1 23334566666553 45667777777666543211111 25
Q ss_pred cchHH--------HHHHHhhcCCCHHHHHHHHHHHHHhhhh-HhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001791 141 WPELL--------PFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1012)
Q Consensus 141 ~~~ll--------~~l~~~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1012)
|..+- ...++.+.++.+.....|...++.++.. ++.. .++.++..+..-..++....++..++.+++.
T Consensus 84 W~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~---~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy 160 (858)
T COG5215 84 WLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNS---LWPGLMEEMVRNVGDEQPVSGKCESLGICGY 160 (858)
T ss_pred hccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccc---cchHHHHHHHHhccccCchHhHHHHHHHHHH
Confidence 53322 2234455677777777788888887764 3433 4677776666555565456777788888888
Q ss_pred HHHhhcCcchHhHHHhhHHHHHHHHHH-HHh-cCChHHHHHHHHHHHH-HHccchHHHHHh-HHHHHHHHHHhhccCCcc
Q 001791 212 FIQCLTSSADRDRFQDLLPLMMRTLTE-SLN-NGNEATAQEALELLIE-LAGTEPRFLRRQ-LVDVVGSMLQIAEAESLE 287 (1012)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~ll~~l~~-~l~-~~~~~~~~~~~~~L~~-l~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~ 287 (1012)
..+.. .++.+...-..++-.+.. ..+ .++..+|-.++.+|.. +......+-..+ .+-+++..+... ...+
T Consensus 161 ~ces~----~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat--q~~d 234 (858)
T COG5215 161 HCESE----APEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT--QGND 234 (858)
T ss_pred Hhhcc----CHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc--cCCc
Confidence 77754 333333333344433333 332 3456688889999887 322221111111 111222223332 3457
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHH
Q 001791 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1012)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (1012)
.++...++.++..+... .++..++|+++.+-.+.....+...| ..+.+.+...+.
T Consensus 235 ~e~q~aafgCl~kim~L------yY~fm~~ymE~aL~alt~~~mks~nd-------------------~va~qavEfWst 289 (858)
T COG5215 235 EELQHAAFGCLNKIMML------YYKFMQSYMENALAALTGRFMKSQND-------------------EVAIQAVEFWST 289 (858)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcch-------------------HHHHHHHHHHHH
Confidence 88899999998887763 12234456666555554443332221 245555555544
Q ss_pred HcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-------CCCChhHHHHHHH
Q 001791 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-------RDPHPRVRWAAIN 440 (1012)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-------~d~~~~vr~~a~~ 440 (1012)
.+..+.-.......+. ..+- .-+ -++. ....+++|.++++| .++++.+-.+|..
T Consensus 290 iceEeid~~~e~~~~p---e~p~--qn~--~fa~------------aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~s 350 (858)
T COG5215 290 ICEEEIDGEMEDKYLP---EVPA--QNH--GFAR------------AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASS 350 (858)
T ss_pred HHHHHhhhHHHHhhcc---cCch--hhc--chHH------------HHHHHHHHHHHHHHHhcCCCccccccchhhhHHH
Confidence 4431111111111111 1110 000 0011 12234455555544 2346889999999
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHH
Q 001791 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1012)
Q Consensus 441 ~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~ 520 (1012)
||..+++..++.+ +..++..+-+.+.+ +++.-|++|.-+++.+...-....+.++.++.+|.+.....++.--++
T Consensus 351 CLqlfaq~~gd~i----~~pVl~FvEqni~~-~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk 425 (858)
T COG5215 351 CLQLFAQLKGDKI----MRPVLGFVEQNIRS-ESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVK 425 (858)
T ss_pred HHHHHHHHhhhHh----HHHHHHHHHHhccC-chhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehh
Confidence 9999998887655 55688888889998 899999999999999998877677889999999999999998888899
Q ss_pred HHHHHHHHHHHHHhHhhhHh--hHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhC--hhhhhhhHHHHHHHHH
Q 001791 521 EGALTALASVADSSQEHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG--KDKFRDDAKQVMEVLM 596 (1012)
Q Consensus 521 ~~a~~~l~~l~~~~~~~~~~--~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~--~~~~~~~~~~i~~~l~ 596 (1012)
+.+..|+|.+++.+...+.| ++...+......+.++.......- .+-......++.++. +..+.++...+++.|+
T Consensus 426 ~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs-w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv 504 (858)
T COG5215 426 STTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCS-WRKENLVDHIAKAVREVESFLAKFYLAILNALV 504 (858)
T ss_pred hHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhH-HHHHhHHHhhhhhhccccchhHHHHHHHHHHHH
Confidence 99999999999998876665 444444444433432110000000 000111222333331 1335566666777766
Q ss_pred HHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCc
Q 001791 597 SLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1012)
Q Consensus 597 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1012)
.-.+.. ..+...|...+.++++++..+.+...+.+-.+.....+-+.
T Consensus 505 ~~t~~~-~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~-------------------------------- 551 (858)
T COG5215 505 KGTELA-LNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLD-------------------------------- 551 (858)
T ss_pred HHHHhh-ccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH--------------------------------
Confidence 532211 22334778888899999888777666655544444333321
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCC
Q 001791 677 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGR 756 (1012)
Q Consensus 677 ~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 756 (1012)
.+++.++.+...-.. ...+++....+..|..+++.. +
T Consensus 552 -------------~~isv~~q~l~~eD~-------------------~~~~elqSN~~~vl~aiir~~------~----- 588 (858)
T COG5215 552 -------------ECISVLGQILATEDQ-------------------LLVEELQSNYIGVLEAIIRTR------R----- 588 (858)
T ss_pred -------------HHHHHhhhhhhhHHH-------------------HHHHHHHHHHHHHHHHHHHhc------C-----
Confidence 111222222111000 012333444444444444432 1
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 001791 757 NESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAE 836 (1012)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e 836 (1012)
..+..+-+.++..+++.+.+.+...+...++.++..+.... .+.|+..++++.+.|.+.+.+
T Consensus 589 --~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl-----~e~Fe~y~~~fiPyl~~aln~----------- 650 (858)
T COG5215 589 --RDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL-----EERFEQYASKFIPYLTRALNC----------- 650 (858)
T ss_pred --CCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH-----HHHHHHHHhhhhHHHHHHhcc-----------
Confidence 11222334444555555544433333444555555544443 345677777777776665421
Q ss_pred CCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCC-CHHHHHHHHHHHHHHHHHhhh
Q 001791 837 DFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCRE 915 (1012)
Q Consensus 837 ~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~ 915 (1012)
.+..+...+..++|.++..+|..|.+|-+.+...+..++.+.. .-+.+-..++++|+++-..|.
T Consensus 651 ---------------~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga 715 (858)
T COG5215 651 ---------------TDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA 715 (858)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence 2345677899999999999999999999999999999884211 112356799999999999999
Q ss_pred hhHhhhHhHHHHHHhhcc--CCC-----hhHHHHH-------HHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCc
Q 001791 916 AALKYYETYLPFLLEACN--DEN-----QDVRQAA-------VYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1012)
Q Consensus 916 ~~~~~~~~l~~~~l~~l~--~~~-----~~vr~~a-------~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~ 981 (1012)
.+.+|++.++-.+...-+ -++ .+.|.++ ..++|.-.++....+.||.-++.+.+.-+-.+|..
T Consensus 716 ~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~--- 792 (858)
T COG5215 716 NFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNG--- 792 (858)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCcc---
Confidence 999999998887766533 111 1234433 34555555555567888888888888877666653
Q ss_pred hhhhhHHHHHHHHHHHHhHccCC
Q 001791 982 ENLMAYDNAVSALGKICQFHRDS 1004 (1012)
Q Consensus 982 ~~~~~~~na~~~~~~l~~~~p~~ 1004 (1012)
.+...+.|++-||-+...+|..
T Consensus 793 -se~~traalGLigDla~mfpkg 814 (858)
T COG5215 793 -SEAHTRAALGLIGDLAGMFPKG 814 (858)
T ss_pred -chhHHHHHHHHHHHHHHhCCCc
Confidence 2445567899999999888874
No 18
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.89 E-value=2.7e-19 Score=184.37 Aligned_cols=682 Identities=15% Similarity=0.129 Sum_probs=407.2
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch
Q 001791 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1012)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~ 263 (1012)
.+...++. .+++ ....|..+++.|..-...+. ....|..++|.++..- + +...|+..+.++..+.....
T Consensus 169 ~v~rllLk-vKNG-~~~mR~~~lRiLtdkav~fg---~~~vfnkvLp~lm~r~---L---eDqerhl~vk~idr~Ly~ld 237 (975)
T COG5181 169 DVYRLLLK-VKNG-GKRMRMEGLRILTDKAVNFG---AAAVFNKVLPMLMSRE---L---EDQERHLVVKLIDRLLYGLD 237 (975)
T ss_pred hHHHHHhh-cccC-CchhhHHHHHHHHHHhhccc---HHHHHHHHHHHHHhhh---h---hhhhhHhHHHHHHHHHHhcc
Confidence 34444443 2555 78899999999887665542 2234555555554432 2 34556777777777765554
Q ss_pred HHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCC
Q 001791 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1012)
Q Consensus 264 ~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1012)
....||+..|+-..-..+ -+.+...|...-+++..++...+ +... +... .++..
T Consensus 238 dl~~pyvhkILvVv~pll--ided~~~r~~g~eii~nL~~~~G--------l~~~-----------vs~m--rpDi~--- 291 (975)
T COG5181 238 DLKVPYVHKILVVVGPLL--IDEDLKRRCMGREIILNLVYRCG--------LGFS-----------VSSM--RPDIT--- 291 (975)
T ss_pred cccccceeeEEEEeeccc--cCccHHHhcccHHHHHHHHHHhc--------ccee-----------eeec--cCCcc---
Confidence 444555443321111111 12344444444455555554210 0000 0000 01111
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001791 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1012)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1012)
..+.-.+.....+.+.++.++| .+.++|++.....|. +|+.|++++.+..+++.-.+-...+|+..++..
T Consensus 292 -----~~deYVRnvt~ra~~vva~alg----v~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~c 362 (975)
T COG5181 292 -----SKDEYVRNVTGRAVGVVADALG----VEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKC 362 (975)
T ss_pred -----cccHHHHHHHHHHHHHHHHhhC----cHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHH
Confidence 0111245667778888888887 567888888888885 899999999999999998877778999999999
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH
Q 001791 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1012)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~ 502 (1012)
+-.++.|.+..||..++.+++.+++..+|.- .+.++.++..|.+..+. .-...-.+-..|.+.++.-.+++-.-.+..
T Consensus 363 i~~~l~D~~~~vRi~tA~alS~lae~~~Pyg-ie~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tr 440 (975)
T COG5181 363 ISKLLKDRSRFVRIDTANALSYLAELVGPYG-IEQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTR 440 (975)
T ss_pred HHHHhhccceeeeehhHhHHHHHHHhcCCcc-hHHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHH
Confidence 9999999999999999999999999888766 57788888888887766 233334455666666776667666667778
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc--------------------------
Q 001791 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-------------------------- 556 (1012)
Q Consensus 503 ~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~-------------------------- 556 (1012)
..+..+...+++++.+.+...+.........-+..-..|.+++.|.+++.+...
T Consensus 441 e~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~ 520 (975)
T COG5181 441 EHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDP 520 (975)
T ss_pred HHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCCh
Confidence 899999999999987777666555544433322222234456666655543221
Q ss_pred ---------cccccchhhHHHHHHHHHHHhhhChhhhhhhH-HHHHHHHHH-HhcCCCCCCCchhHHHHHHHHHHHHHhc
Q 001791 557 ---------TDKSNRMLRAKSMECISLVGMAVGKDKFRDDA-KQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1012)
Q Consensus 557 ---------~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~-~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1012)
-.++..+.|..+..+.+.+...+|...|..-+ +.+++.++. .+.+. .-...++.||+.+..+++
T Consensus 521 ~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~-----~t~~~il~~f~tv~vsl~ 595 (975)
T COG5181 521 RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQD-----TTVGLILPCFSTVLVSLE 595 (975)
T ss_pred HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcc-----ccccEEEecccceeeehh
Confidence 11222333433334444443333322232221 222333222 22211 111235567777777777
Q ss_pred CCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhh--
Q 001791 626 QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK-- 703 (1012)
Q Consensus 626 ~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~-- 703 (1012)
-...||++.++..+++.++..+. +.|+-|..+.+.++..++
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p-------------------------------------~vR~~aadl~~sl~~vlk~c 638 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPP-------------------------------------DVRIRAADLMGSLAKVLKAC 638 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCc-------------------------------------cHHHHHHHHHHHHHHHHHhc
Confidence 78899999999999999876432 123445556666655443
Q ss_pred -h-cccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 001791 704 -E-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPD 781 (1012)
Q Consensus 704 -~-~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (1012)
+ ....++.- .+...+.+. .+++--....++..+..... ...+++-+..++|.|...+++. .
T Consensus 639 ~e~~~l~klg~---iLyE~lge~-ypEvLgsil~Ai~~I~sv~~------------~~~mqpPi~~ilP~ltPILrnk-h 701 (975)
T COG5181 639 GETKELAKLGN---ILYENLGED-YPEVLGSILKAICSIYSVHR------------FRSMQPPISGILPSLTPILRNK-H 701 (975)
T ss_pred chHHHHHHHhH---HHHHhcCcc-cHHHHHHHHHHHHHHhhhhc------------ccccCCchhhccccccHhhhhh-h
Confidence 2 22222222 222333332 44444444444444433321 1112223556667776666554 3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHH-HHHhh--ccC-CCHHHhh-HhhhhhhhHHHH
Q 001791 782 TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRER-AERAK--AED-FDAEESE-LIKEENEQEEEV 856 (1012)
Q Consensus 782 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~--~e~-~d~~~~~-~~~~~~e~~~~~ 856 (1012)
..+..+.+..++.+........++.....++-.+.+.|+...+..+-. +...| .+- ...+..+ -+++.+-.++..
T Consensus 702 ~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~ 781 (975)
T COG5181 702 QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQERQQ 781 (975)
T ss_pred HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHh
Confidence 345555666666444433334666666666666677776543321111 00000 000 0001111 112223344555
Q ss_pred HHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCC
Q 001791 857 FDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDEN 936 (1012)
Q Consensus 857 ~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~ 936 (1012)
|.+..-.++..++.+|.. .++|.++.-. .++..++....+..+.+++++.|+....|+..+.|.+-.+|.|+|
T Consensus 782 RvctsvaI~iVae~cgpf------sVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD 854 (975)
T COG5181 782 RVCTSVAISIVAEYCGPF------SVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRD 854 (975)
T ss_pred hhhhhhhhhhhHhhcCch------hhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc
Confidence 555555566666666542 3567777765 477888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHHhhcCCCCC
Q 001791 937 QDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNVVIRHPNAL 979 (1012)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~~-~~~~~~~~il~~L~~~l~~~~~~ 979 (1012)
+.-|+.|...+..++.+++. .-.+.+-+++..|.+-+-.+..+
T Consensus 855 ~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPh 898 (975)
T COG5181 855 PVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPH 898 (975)
T ss_pred hHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcH
Confidence 99999999999999999763 33455667777777776666543
No 19
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.88 E-value=4.6e-17 Score=197.96 Aligned_cols=803 Identities=14% Similarity=0.103 Sum_probs=482.8
Q ss_pred hhHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC
Q 001791 21 SAPFETLISHLMST--SNEQRSEAELLFNLCKQQDPD---------SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD 89 (1012)
Q Consensus 21 ~~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~p~---------~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~ 89 (1012)
..++..+++.+.+. +.+.|++|...|..+.+.+++ ++++.|+..|. +.++.+|..|+-.|.++-..
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~-sg~~~vk~nAaaaL~nLS~~-- 88 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLR-SGTLGAKVNAAAVLGVLCKE-- 88 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcC--
Confidence 35778888988866 678899999999888875543 24567888875 45688999999888776433
Q ss_pred CCcccCCCHHHH-----HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc------chHHHHHHHhhcCCC--
Q 001791 90 SFLWPRLSLHTQ-----SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW------PELLPFMFQCVSSDS-- 156 (1012)
Q Consensus 90 ~~~w~~l~~~~~-----~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~------~~ll~~l~~~~~~~~-- 156 (1012)
++.+ ......|+..|.+ .+...|..++.+|..++........| ...+|.|..++++++
T Consensus 89 --------e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~ 159 (2102)
T PLN03200 89 --------EDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQ 159 (2102)
T ss_pred --------HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchh
Confidence 1222 2333467788876 68889999999999998742111122 556888888888763
Q ss_pred -HHHHHHHHHHHHHhhhhHhhhccc-cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHH
Q 001791 157 -VKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1012)
Q Consensus 157 -~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 234 (1012)
..++..+..+|..++...+..... .-...++.+.+.|+++ ++.++..|..++..++...++ ....+.+ -..++
T Consensus 160 d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee--~~~aVIe--aGaVP 234 (2102)
T PLN03200 160 DKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFES--SISKVLD--AGAVK 234 (2102)
T ss_pred hHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChH--HHHHHHH--CCCHH
Confidence 234555677888888654432111 1234677888888886 899999999988877755321 1111111 02344
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHhhccCC-------cchHHHHHHHHHHHHHHHhh
Q 001791 235 TLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAES-------LEEGTRHLAIEFVITLAEAR 305 (1012)
Q Consensus 235 ~l~~~l~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~-------~~~~vr~~a~~~l~~l~~~~ 305 (1012)
.+.+++.+ +++.+|..|..+|..++...++.-..... ..++.++..+..++ ....+++.|...+..+|..
T Consensus 235 ~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg- 313 (2102)
T PLN03200 235 QLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG- 313 (2102)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC-
Confidence 44455543 45689999999999999865543332221 23444544443221 2345688899999999872
Q ss_pred hccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCC-c----ch-HHHH
Q 001791 306 ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN-T----IV-PVAS 379 (1012)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~-~----~~-~~~~ 379 (1012)
. ..+++.+...+....+. .....+...+..+...+... . +- ..+.
T Consensus 314 ---------~----~~ll~~L~~ll~s~rd~----------------~~~ada~gALayll~l~d~~~~~~~~i~~~~v~ 364 (2102)
T PLN03200 314 ---------M----SALILYLGELSESPRSP----------------APIADTLGALAYALMVFDSSAESTRAFDPTVIE 364 (2102)
T ss_pred ---------c----hhhHHHHHHhhcccchH----------------HHHHHHHhhHHHHHHhcCCchhhhhhccccccH
Confidence 1 33444444333211000 00011222333332222111 0 00 1234
Q ss_pred HHHHHhhCCCChhH-HHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001791 380 EQLPAYLAAPEWQK-HHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1012)
Q Consensus 380 ~~l~~~l~~~~~~~-r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1012)
+.+.+++.+.++.. .+.+..+|..+..+..- ... +-...++.++.++...+..+|..++++|..++..-......-.
T Consensus 365 ~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L-~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 365 QILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL-NHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH-HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55667777765543 55666666554433211 011 1135677888999989999999999999999865333221112
Q ss_pred hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcH-HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001791 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~-~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
-...+|.+++.|.+ +++.+|..|+++++.+........ .... ...++.|++++.+++..+++.|..++++++.. .+
T Consensus 444 ~~ggIp~LV~LL~s-~s~~iQ~~A~~~L~nLa~~ndenr-~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~ 520 (2102)
T PLN03200 444 GREGVQLLISLLGL-SSEQQQEYAVALLAILTDEVDESK-WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SE 520 (2102)
T ss_pred HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cH
Confidence 34578999999998 788999999999999976443111 1111 25688899999999999999999999999863 33
Q ss_pred hhHhhH--hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHH
Q 001791 537 HFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYML 614 (1012)
Q Consensus 537 ~~~~~~--~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~ 614 (1012)
+....+ ...+|.|.+.+.+. +...+..+..++..+...-..+.. +.++ .+... .+......++
T Consensus 521 qir~iV~~aGAIppLV~LL~sg----d~~~q~~Aa~AL~nLi~~~d~~~I----~~Lv----~LLls---dd~~~~~~aL 585 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLKNG----GPKGQEIAAKTLTKLVRTADAATI----SQLT----ALLLG---DLPESKVHVL 585 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHhCC----CHHHHHHHHHHHHHHHhccchhHH----HHHH----HHhcC---CChhHHHHHH
Confidence 333333 36788899998652 345667778888777654332222 2233 32221 2234566677
Q ss_pred HHHHHHHHHhcCC-cccc---hhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHH
Q 001791 615 QAWARLCKCLGQD-FLPY---MSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKAT 690 (1012)
Q Consensus 615 ~~~~~l~~~~~~~-~~~~---l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~ 690 (1012)
.+++++....... +..- -...++.|.+.+... .-..|+.
T Consensus 586 ~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-------------------------------------s~~ikk~ 628 (2102)
T PLN03200 586 DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-------------------------------------KEETQEK 628 (2102)
T ss_pred HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-------------------------------------CHHHHHH
Confidence 7777775533221 0100 124556666665321 1223677
Q ss_pred HHHHHHHHHHHhhhccc-ccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHH-HHH
Q 001791 691 ACNMLCCYADELKEGFF-PWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLS-DFI 768 (1012)
Q Consensus 691 a~~~l~~i~~~~~~~~~-p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 768 (1012)
|+.++..++...+.... -.....++.++.++.. .+.++++.++.+|+++.... .......++ ...
T Consensus 629 Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss-~~~~v~keAA~AL~nL~~~~------------~~~q~~~~v~~Ga 695 (2102)
T PLN03200 629 AASVLADIFSSRQDLCESLATDEIINPCIKLLTN-NTEAVATQSARALAALSRSI------------KENRKVSYAAEDA 695 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc-CChHHHHHHHHHHHHHHhCC------------CHHHHHHHHHcCC
Confidence 88888888764432110 0112344455555554 37789999999999998642 223223323 347
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhh
Q 001791 769 IPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQV-RSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIK 847 (1012)
Q Consensus 769 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~ 847 (1012)
+|+|++.+... +.++....+.+|..+++..... .+.. ...++.+.++|..-
T Consensus 696 V~pL~~LL~~~-d~~v~e~Al~ALanLl~~~e~~--~ei~~~~~I~~Lv~lLr~G------------------------- 747 (2102)
T PLN03200 696 IKPLIKLAKSS-SIEVAEQAVCALANLLSDPEVA--AEALAEDIILPLTRVLREG------------------------- 747 (2102)
T ss_pred HHHHHHHHhCC-ChHHHHHHHHHHHHHHcCchHH--HHHHhcCcHHHHHHHHHhC-------------------------
Confidence 89999988654 6678888888888776643110 0111 12344444444331
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHccc-c-chhhHHH--HHHhHhhhhcCCCCHHH--HHHHHHHHHHHHHHh-hhhhH--
Q 001791 848 EENEQEEEVFDQVGEILGTLIKTFKA-A-FLPFFDE--LSSYLTPMWGKDKTAEE--RRIAICIFDDVAEQC-REAAL-- 918 (1012)
Q Consensus 848 ~~~e~~~~~~~~~~~~l~~l~~~~~~-~-~~~~~~~--ll~~l~~~l~~~~~~~~--~~~~~~~l~~l~~~~-~~~~~-- 918 (1012)
....++.++..+..+++..+. + +..+... .+..++.+++ +.+.+. ...++.+++.+.+.- +....
T Consensus 748 -----~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~-~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 821 (2102)
T PLN03200 748 -----TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN-STDLDSSATSEALEALALLARTKGGANFSHP 821 (2102)
T ss_pred -----ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHh-cCCcchhhHHHHHHHHHHHHhhcccCCCCCC
Confidence 123566789999999988773 3 3233332 4566666774 333333 334888898888752 22211
Q ss_pred hh-----hHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHH---HHHHHHHHHhh
Q 001791 919 KY-----YETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLV---GEALSRLNVVI 973 (1012)
Q Consensus 919 ~~-----~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~---~~il~~L~~~l 973 (1012)
|| .|.-+..+..++.+.+|.+...|+..|..+++--+.....++ +..+..|.+.+
T Consensus 822 ~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 884 (2102)
T PLN03200 822 PWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRI 884 (2102)
T ss_pred chhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHH
Confidence 22 344566677888899999999999999999886554444443 23444444444
No 20
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.1e-17 Score=171.93 Aligned_cols=603 Identities=13% Similarity=0.151 Sum_probs=346.5
Q ss_pred hHHHHHHHHhcCC--ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 22 APFETLISHLMST--SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 22 ~~l~~ll~~~~s~--d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
+.+++++.++..| |...|+||..++++++. .|.+| ..+.+++.+ ..++.+|..+...|...++.+ +...+.
T Consensus 3 ddiEqav~a~ndp~vdsa~KqqA~~y~~qiKs-Sp~aw-~Icie~l~~~ts~d~vkf~clqtL~e~vrek----yne~nl 76 (980)
T KOG2021|consen 3 DDIEQAVNAVNDPRVDSATKQQAIEYLNQIKS-SPNAW-EICIELLINETSNDLVKFYCLQTLIELVREK----YNEANL 76 (980)
T ss_pred hHHHHHHHhhCCCcccHHHHHHHHHHHHhhcC-CccHH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHh----hccCCH
Confidence 3566777777665 88999999999999999 78876 788888876 478999999999999999886 566888
Q ss_pred HHHHHHHHHHHHHHhh-----c---chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHH-HHHHHHHHHHH
Q 001791 99 HTQSSLKSMLLQSIQL-----E---SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVK-LQESAFLIFAQ 169 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~-----~---~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~-~r~~al~~l~~ 169 (1012)
.+++.+|..+...++- + ..+.+++.+++.++.+.-.++| ..|+.++..++..+.-+... -...-++++-.
T Consensus 77 ~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp-~~WnsfF~dlmsv~~~~s~~~~~dfflkvlla 155 (980)
T KOG2021|consen 77 NELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYP-DCWNSFFDDLMSVFQVDSAISGLDFFLKVLLA 155 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHhcccchhhHHHHHHHHHH
Confidence 8999999999887753 1 2567999999999999999999 58999998888776533211 01111122222
Q ss_pred hhhhHhh--------h----------cc-ccH--------------------------------------------HHHH
Q 001791 170 LSQYIGD--------T----------LT-PHL--------------------------------------------KHLH 186 (1012)
Q Consensus 170 l~~~~~~--------~----------~~-~~~--------------------------------------------~~l~ 186 (1012)
+-.++.+ + ++ ..+ +..+
T Consensus 156 IdsEiad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~ 235 (980)
T KOG2021|consen 156 IDSEIADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIANDYFL 235 (980)
T ss_pred hhhHhhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhhchhHH
Confidence 2111100 0 00 011 2223
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHH-----
Q 001791 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL--NNGNEATAQEALELLIELA----- 259 (1012)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l--~~~~~~~~~~~~~~L~~l~----- 259 (1012)
+++...+. ..++|.+|..|+..++..--++.+.-.+.+.+...++...-.. +..|.+.-....+++....
T Consensus 236 nLLy~fl~---ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~ 312 (980)
T KOG2021|consen 236 NLLYKFLN---IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTI 312 (980)
T ss_pred HHHHHHHh---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeeh
Confidence 33333332 2355666666666555432121111111111111122111111 1234444433333333221
Q ss_pred ------ccchH----HHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001791 260 ------GTEPR----FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1012)
Q Consensus 260 ------~~~~~----~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1012)
+.... .....+-.+++++++.+.+ ..+++....+.+|+.....-+..+..-.....++.+++..++..
T Consensus 313 i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~--e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kq 390 (980)
T KOG2021|consen 313 IISQLNSELDTLYKQNVLSILLEIVPYLLQFLNN--EFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQ 390 (980)
T ss_pred hHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHH
Confidence 11111 1122233577778877754 34555666677777655431112221122334677888888888
Q ss_pred hccCCCCccccCCCCCCccccCCcchhhHHH-HHHHHHHHcCCCcchHHHHHHHHHhhC---CCChhHHHHHHHHHHHHH
Q 001791 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQE-CLDRLAIALGGNTIVPVASEQLPAYLA---APEWQKHHAALIALAQIA 405 (1012)
Q Consensus 330 l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~-~l~~l~~~~~~~~~~~~~~~~l~~~l~---~~~~~~r~aal~~l~~l~ 405 (1012)
+++.+. ..|.....++|+++.....+--.+ .++.++. +.++-+...+-..+...+. ..+|..-+.|+..+..++
T Consensus 391 icydem-y~nddn~tg~EeEa~f~e~RkkLk~fqdti~~-idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lg 468 (980)
T KOG2021|consen 391 ICYDEM-YFNDDNVTGDEEEAFFEEVRKKLKNFQDTIVV-IDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLG 468 (980)
T ss_pred HhccHH-hhcccCCCCchHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 876432 123333222333333333333233 3344443 3334444555555554443 367999999999999999
Q ss_pred hhcHHHHH----------HhHHHHHHHHHh--hCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh--hcCC
Q 001791 406 EGCAKVMV----------KNLEQVLSMVLN--SFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG--AMDD 471 (1012)
Q Consensus 406 ~~~~~~~~----------~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~--~l~~ 471 (1012)
++.+.... ..+..+++.+.. ...++|+.|+-.-+..+.++...+..+ ..+++.++...+. .+.+
T Consensus 469 E~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~e--sq~ip~vL~aFld~rglhn 546 (980)
T KOG2021|consen 469 ECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTE--SQKIPLVLNAFLDSRGLHN 546 (980)
T ss_pred hccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcc--hhhhHHHHHHHccchhccc
Confidence 87653111 223344455444 347889999999888888887766543 2455555555553 3455
Q ss_pred CCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcC------------ChhHHHHHHHHHHHHHHHh---Hh
Q 001791 472 FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG------------KQMVQEGALTALASVADSS---QE 536 (1012)
Q Consensus 472 ~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~------------~~~v~~~a~~~l~~l~~~~---~~ 536 (1012)
.+.+||.+|...+.++++.+.+ .+.||.+.++..+..++... ...-+...++++|-++..- .+
T Consensus 547 -~ne~Vr~RawYLF~RfVKlLkk-qlvpfie~iln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE 624 (980)
T KOG2021|consen 547 -KNENVRLRAWYLFTRFVKLLKK-QLVPFIEEILNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAE 624 (980)
T ss_pred -cccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHH
Confidence 7889999999999999998874 57799999999999988322 1122334556666554321 12
Q ss_pred hhHhhHhhhhHHHHHHH-----hh-ccccccchhhH----HHHHHHHHHHhhhChhh-------hhhhHHHHHHHHHHHh
Q 001791 537 HFQKYYDAVMPFLKAIL-----VN-ATDKSNRMLRA----KSMECISLVGMAVGKDK-------FRDDAKQVMEVLMSLQ 599 (1012)
Q Consensus 537 ~~~~~~~~il~~l~~~l-----~~-~~~~~~~~lr~----~a~~~l~~l~~~~~~~~-------~~~~~~~i~~~l~~l~ 599 (1012)
.-..|.+.++.++..-. .. -.+++..++.. .++.+++.+++...... ...-...+.+.++...
T Consensus 625 ~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~l 704 (980)
T KOG2021|consen 625 LQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTL 704 (980)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHH
Confidence 23345555544322111 00 01222222222 13344555554432110 0111233444444422
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHh
Q 001791 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1012)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~ 643 (1012)
. .+...+.+|.++-.++++++..+|.++-||+|..++.+++..
T Consensus 705 s-~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~ 747 (980)
T KOG2021|consen 705 S-FFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSST 747 (980)
T ss_pred h-hccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcC
Confidence 2 223346789999999999999999999999999999888755
No 21
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.88 E-value=7.2e-15 Score=152.57 Aligned_cols=496 Identities=18% Similarity=0.251 Sum_probs=326.4
Q ss_pred CChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
.|.+-+.++....+.+++..+++|++-|.+|+. +|+.| ...-+|+.++..|+.+..|..+|.+++..+ |+-+|.
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~-~PdaW-tkad~IL~~S~~pqskyiALs~LdklIttk----Wkllp~ 84 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQE-LPDAW-TKADYILNNSKLPQSKYIALSLLDKLITTK----WKLLPE 84 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHh-CchHH-HHHHHHHhcccCcchhhhHHHHHHHHHHhh----hhhCCc
Confidence 467788999999999999999999999999999 89988 777888888999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHhhc-c-------hHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001791 99 HTQSSLKSMLLQSIQLE-S-------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~-~-------~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1012)
+.+.+||+-+++.+... + ...+-+.+-.++-.|++.++| ..||+++|.+++..+ .+-++.+..+.+|..+
T Consensus 85 ~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP-~nWP~FIpeli~~S~-~s~~vCeNnmivLklL 162 (1053)
T COG5101 85 GMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWP-RNWPTFIPELINVSQ-ISMEVCENNMIVLKLL 162 (1053)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcc-cccchhhHHHHhhcc-chHHHHhccHHHHHHh
Confidence 99999999999877541 2 233455677788899999999 699999999999766 4567788888888888
Q ss_pred hhhHh----------------hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHH
Q 001791 171 SQYIG----------------DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1012)
Q Consensus 171 ~~~~~----------------~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 234 (1012)
.++.- +++...+++++.++.+.|.-..++..-.+.+..+..+..+++- ...|. ..+++
T Consensus 163 sEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl---~yIfe---TnIie 236 (1053)
T COG5101 163 SEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPL---DYIFE---TNIIE 236 (1053)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCch---hHHHH---HHHHH
Confidence 77531 1233467889999888887665778888999999888888741 11222 24555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHccch-----H----HHHHh---------------------------------HHH
Q 001791 235 TLTESLNNGNEATAQEALELLIELAGTEP-----R----FLRRQ---------------------------------LVD 272 (1012)
Q Consensus 235 ~l~~~l~~~~~~~~~~~~~~L~~l~~~~~-----~----~~~~~---------------------------------~~~ 272 (1012)
.+.+.+.+ .++.|..++.||.+++.... . .+.-+ +..
T Consensus 237 Lv~~~f~s-~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~ 315 (1053)
T COG5101 237 LVLEHFNS-MPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQK 315 (1053)
T ss_pred HHHHHhcc-CCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHH
Confidence 55555543 67788888888888875331 0 00000 000
Q ss_pred HHHHH-------HHhhccCC------------------cchHHHHHHHHHHHHHHHh--hh--c----------------
Q 001791 273 VVGSM-------LQIAEAES------------------LEEGTRHLAIEFVITLAEA--RE--R---------------- 307 (1012)
Q Consensus 273 i~~~l-------~~~~~~~~------------------~~~~vr~~a~~~l~~l~~~--~~--~---------------- 307 (1012)
+..++ +..++.++ .+.++-..+++.|..++.. .+ +
T Consensus 316 LA~fL~s~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s 395 (1053)
T COG5101 316 LAQFLSSLYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGS 395 (1053)
T ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccc
Confidence 00000 00111110 1122333455555544321 00 0
Q ss_pred -----cchhhhcchhhH--------HHHHHHHHHhhccCCCCccccCCCCCCc-------cccCCcchhhHHHHHHHHHH
Q 001791 308 -----APGMMRKLPQFI--------NRLFAILMSMLLDIEDDPLWHSAETEDE-------DAGESSNYSVGQECLDRLAI 367 (1012)
Q Consensus 308 -----~~~~~~~~~~~~--------~~l~~~l~~~l~~~~~~~~~~~~~~~~e-------d~~~~~~~~~a~~~l~~l~~ 367 (1012)
.|+.... .|.- .++--.++..|..+++- .-..+++.| |.+.-..++....++-.+.-
T Consensus 396 ~~istnpn~~~~-~pLrkhiY~~ilsqLrlvlienMvrPEEV--liVendegEivRefvketDtI~lYksmRevLvyLth 472 (1053)
T COG5101 396 QAISTNPNQDST-KPLRKHIYIGILSQLRLVLIENMVRPEEV--LIVENDEGEIVREFVKETDTIELYKSMREVLVYLTH 472 (1053)
T ss_pred hhccCCcchhcc-cchHHHHHHHHHHHHHHHHHHcCCCcceE--EEEECCCcHHHHHHhccccHhHHHHHHhhHHHHHhh
Confidence 0100000 0111 11112222222222110 000010000 11122234445556655543
Q ss_pred HcCCCcchHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhhcHHHH-HHhHHHHHHHHHh-----hCCCCChhHHHHHH
Q 001791 368 ALGGNTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVM-VKNLEQVLSMVLN-----SFRDPHPRVRWAAI 439 (1012)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~-~~~l~~i~~~l~~-----~l~d~~~~vr~~a~ 439 (1012)
.. ..+.-..++..+...+.+. +|..-..-++++|+++...++.. +.++-+++..++. .-+|....|.....
T Consensus 473 L~-v~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIM 551 (1053)
T COG5101 473 LI-VDDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIM 551 (1053)
T ss_pred hh-hhhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhheccee
Confidence 22 2344445556666566554 46777788999999988776533 3455666665554 34666777777888
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc-------cccCcHHHHHHHHHHHh
Q 001791 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-------ILTPYLDGIVSKLLVLL 512 (1012)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-------~l~~~~~~il~~l~~~l 512 (1012)
..+|++-+.+..++ .++..++..+++.+.. .+..|+..||..+-.++..|+.. .-.|++..|+..+-+..
T Consensus 552 yvvGQYpRFLkahw--~FLkTVv~KLFEFMhE-~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT 628 (1053)
T COG5101 552 YVVGQYPRFLKAHW--SFLKTVVKKLFEFMHE-DHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTT 628 (1053)
T ss_pred eeeccchHHHHHHH--HHHHHHHHHHHHHHhh-hhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhc
Confidence 88999888887776 6899999999999988 88999999999999999887532 23588888888887776
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHh
Q 001791 513 QNGKQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 513 ~~~~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
.+-.+.-+....+++|.+++..++
T Consensus 629 ~dL~pqQ~htfYeAcg~vIse~p~ 652 (1053)
T COG5101 629 GDLEPQQKHTFYEACGMVISEVPK 652 (1053)
T ss_pred ccCChHHHhHHHHHHhHHHhccch
Confidence 666677777788899988887663
No 22
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=6.7e-18 Score=192.13 Aligned_cols=630 Identities=16% Similarity=0.199 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchH--HHHHhHHHHHHHHHHhhccC-CcchHHHHHHHHHHHHHHHhh
Q 001791 229 LPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR--FLRRQLVDVVGSMLQIAEAE-SLEEGTRHLAIEFVITLAEAR 305 (1012)
Q Consensus 229 ~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~--~~~~~~~~i~~~l~~~~~~~-~~~~~vr~~a~~~l~~l~~~~ 305 (1012)
...+.+.+...+.++++..|++++-.|..++...+. ...-+.++|.......+.+. +...++....+.+.+.+...
T Consensus 816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~- 894 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS- 894 (1702)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc-
Confidence 335666777777889999999887777766654431 12223445554444444322 22334444444444444441
Q ss_pred hccchhhhcchhhHHHHHHHHHHhhccCCC-------Cc-cccCCCCC-CccccCCcchhhHHHHHHHHHHHcCCCcchH
Q 001791 306 ERAPGMMRKLPQFINRLFAILMSMLLDIED-------DP-LWHSAETE-DEDAGESSNYSVGQECLDRLAIALGGNTIVP 376 (1012)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-------~~-~~~~~~~~-~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 376 (1012)
+.-+.++..++..+..... +. -+....-. -.+.+ .-...+-|-.|+.-+|. |
T Consensus 895 -----------~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg----~isTYKELc~LASdl~q----P 955 (1702)
T KOG0915|consen 895 -----------SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGG----KISTYKELCNLASDLGQ----P 955 (1702)
T ss_pred -----------hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCC----cchHHHHHHHHHhhcCC----h
Confidence 1224444444444432211 10 01100000 00000 11234556666766663 3
Q ss_pred HHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001791 377 VASEQLPAYLA-APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1012)
Q Consensus 377 ~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1012)
.++-.+.++.+ +..|..|.+|.+.||.++....+.+.+|+++++|.+.+.--||++.|+.+....++.+...-..-+ +
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~v-d 1034 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVV-D 1034 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHH-H
Confidence 44444445555 468999999999999999999999999999999999999999999999999999999987655444 8
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALT---ALASVAD 532 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~---~l~~l~~ 532 (1012)
.|+.+|+..|+..+.+ ..++||+++|.||..++..-+.+.+...++.++..++..+++-...||+.+-. +++.++-
T Consensus 1035 ~y~neIl~eLL~~lt~-kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTS-KEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999 99999999999999999998877777889999999999999888888887554 5555544
Q ss_pred HhHh-----hhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCC
Q 001791 533 SSQE-----HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD 607 (1012)
Q Consensus 533 ~~~~-----~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~ 607 (1012)
...+ .-...++.++|+|.+--. -.....+|..++.++..+++..| ..+.||.+++++.+++.... ++ +
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gi---ms~v~evr~~si~tl~dl~Kssg-~~lkP~~~~LIp~ll~~~s~-lE--~ 1186 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGI---MSKVNEVRRFSIGTLMDLAKSSG-KELKPHFPKLIPLLLNAYSE-LE--P 1186 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCc---ccchHHHHHHHHHHHHHHHHhch-hhhcchhhHHHHHHHHHccc-cc--h
Confidence 4332 223577888888875321 12455688889999999999999 46999999999999985442 11 0
Q ss_pred chhHH-HHHH-------HHHHHHHhcCCccc---------------chhhhhHHHHHHhccCCCccccCCCCCccccCCC
Q 001791 608 PTTSY-MLQA-------WARLCKCLGQDFLP---------------YMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSD 664 (1012)
Q Consensus 608 ~~~~~-~~~~-------~~~l~~~~~~~~~~---------------~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1012)
.+..+ .+++ +.+. +.-+..-.| .+++++|.+.+.+...
T Consensus 1187 ~vLnYls~r~~~~e~ealDt~-R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s------------------ 1247 (1702)
T KOG0915|consen 1187 QVLNYLSLRLINIETEALDTL-RASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS------------------ 1247 (1702)
T ss_pred HHHHHHHHhhhhhHHHHHHHH-HHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc------------------
Confidence 01111 0000 0000 000011111 1234444444444221
Q ss_pred CcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHH
Q 001791 665 DDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1012)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (1012)
. .+..|..+...+..++..++.++.||...++..+++.+.+ .++.+|++.+.++|.+++..
T Consensus 1248 -------------V-----gl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d-RNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1248 -------------V-----GLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD-RNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred -------------C-----CCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc-ccHHHHHHHHHHHHHHHhcC
Confidence 1 1224567778899999999999999999999999999997 59999999999999999875
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 001791 745 KLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSS 824 (1012)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~ 824 (1012)
.+++...++...+..++.- .++...+. +..+..+... ..+.++...+.+++...-..-
T Consensus 1309 ------------s~dq~qKLie~~l~~~l~k--~es~~sis---catis~Ian~-----s~e~Lkn~asaILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1309 ------------SPDQMQKLIETLLADLLGK--DESLKSIS---CATISNIANY-----SQEMLKNYASAILPLIFLAMH 1366 (1702)
T ss_pred ------------ChHHHHHHHHHHHHHHhcc--CCCccchh---HHHHHHHHHh-----hHHHHHhhHHHHHHHHHHHHh
Confidence 4556666665555443321 22211222 2222222221 122333333333332221110
Q ss_pred hHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchh-hHHHHHHhHhhhhcCCCCHHHHHHHH
Q 001791 825 RKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLP-FFDELSSYLTPMWGKDKTAEERRIAI 903 (1012)
Q Consensus 825 ~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~~~~~~~~ 903 (1012)
|+ +.+ ...+.+.+ ...++. .|..-.+ +...++-.++.....+..+..|..+.
T Consensus 1367 -----------ee-~Ka-----------~q~Lw~dv---W~e~vs-ggagtvrl~~~eiLn~iceni~nn~~w~lr~q~A 1419 (1702)
T KOG0915|consen 1367 -----------EE-EKA-----------NQELWNDV---WAELVS-GGAGTVRLYLLEILNLICENITNNESWKLRKQAA 1419 (1702)
T ss_pred -----------HH-HHH-----------HHHHHHHH---HHHhCC-CCcchhhhhHHHHHHHHHHHhccchHHHHHHHHH
Confidence 00 000 00111111 111111 1222233 44455555555554566688888888
Q ss_pred HHHHHHHHHhhhhhH-hhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhc
Q 001791 904 CIFDDVAEQCREAAL-KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 974 (1012)
Q Consensus 904 ~~l~~l~~~~~~~~~-~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~ 974 (1012)
..+..++......+. |++-++.+.++..+..+..+=++.-..++...+..+...+...++.+.....+...
T Consensus 1420 kai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~s 1491 (1702)
T KOG0915|consen 1420 KAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVS 1491 (1702)
T ss_pred HHHHHHcccccccCChHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHH
Confidence 888888877666554 78889999999999988888777777778777777766666666666666666554
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.85 E-value=1.1e-15 Score=186.22 Aligned_cols=815 Identities=15% Similarity=0.145 Sum_probs=484.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch--------HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC-CCcc
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPD--------SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD-SFLW 93 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~--------~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~-~~~w 93 (1012)
.+..++..+.+++..++..|...|..+.. ++. +.++.|+.+|.++ +++.|..|+..|..+..... ...|
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~-~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~ 136 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCK-EEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVG 136 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhh
Confidence 34456666667888888888877766655 332 3478889998654 79999999999999865420 0011
Q ss_pred cCCCHHHHHHHHHHHHHHHhhc--chHhHHHHHHHHHHHHHhcccCCCCcch-----HHHHHHHhhcCCCHHHHHHHHHH
Q 001791 94 PRLSLHTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPE-----LLPFMFQCVSSDSVKLQESAFLI 166 (1012)
Q Consensus 94 ~~l~~~~~~~i~~~ll~~l~~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~~-----ll~~l~~~~~~~~~~~r~~al~~ 166 (1012)
..+- ........|+..+.+. .+..++..++.+|..++.+. .+.|.. .+|.+...++++++..+..+..+
T Consensus 137 ~~I~--v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~--en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~a 212 (2102)
T PLN03200 137 SKIF--STEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST--DGFWSATLEAGGVDILVKLLSSGNSDAQANAASL 212 (2102)
T ss_pred hhhh--hhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc--cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 1100 1123445677777652 23456777788888888753 346643 68899999999999999999998
Q ss_pred HHHhhhhHhhhccc-cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHH--HhhHHHHHHHHHHH----
Q 001791 167 FAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTES---- 239 (1012)
Q Consensus 167 l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~---- 239 (1012)
+..++...++.... .-...+|.+.+.|++..+..+|..|..+|..+...-+ +..... .+-+|.+++.+...
T Consensus 213 La~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~--e~r~~Iv~aGgIp~LI~lL~sp~~e~ 290 (2102)
T PLN03200 213 LARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSK--EAKQAIADAGGIPALINATVAPSKEF 290 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCH--HHHHHHHHCCCHHHHHHHHhCcchhh
Confidence 88777654332111 1234578888888765367999999999999887421 111111 13355555544311
Q ss_pred Hhc-CChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001791 240 LNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1012)
Q Consensus 240 l~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1012)
.++ .+...+..+..+|..++...+. +++++...+.. ..+......++..+..+...-+ .+. .... .
T Consensus 291 ~~~~~~~~Lqe~AvwALsNIcgg~~~--------ll~~L~~ll~s-~rd~~~~ada~gALayll~l~d-~~~--~~~~-~ 357 (2102)
T PLN03200 291 MQGEFAQALQENAMGALANICGGMSA--------LILYLGELSES-PRSPAPIADTLGALAYALMVFD-SSA--ESTR-A 357 (2102)
T ss_pred hccccchHHHHHHHHHHHHHhCCchh--------hHHHHHHhhcc-cchHHHHHHHHhhHHHHHHhcC-Cch--hhhh-h
Confidence 011 1234578899999999876532 23333322211 1122222223333333322100 000 0000 1
Q ss_pred H--HHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcch------HHHHHHHHHhhCCCC
Q 001791 319 I--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIV------PVASEQLPAYLAAPE 390 (1012)
Q Consensus 319 ~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~------~~~~~~l~~~l~~~~ 390 (1012)
+ ..+.+.+.+++...+..+ .......+| ...+| +..+ ....+.+..++...+
T Consensus 358 i~~~~v~~~LV~Llr~k~p~~----------------vqe~V~eAL---asl~g-N~~l~~~L~~~daik~LV~LL~~~~ 417 (2102)
T PLN03200 358 FDPTVIEQILVKLLKPRDTKL----------------VQERIIEAL---ASLYG-NAYLSRKLNHAEAKKVLVGLITMAT 417 (2102)
T ss_pred ccccccHHHHHHHhCCCCCch----------------hHHHHHHHH---HHhcC-ChHHHHHHHhccchhhhhhhhccCC
Confidence 1 123455555554322110 111122222 22222 1111 123344566777888
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001791 391 WQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1012)
...+..++.++..++.+..+....... ..+|.+++.|.++++.+|..|+++++.++.........-.-...+|.+.+.|
T Consensus 418 ~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL 497 (2102)
T PLN03200 418 ADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL 497 (2102)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 899999999999999876654333332 3579999999999999999999999999864432111112357899999999
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCcccccCcH--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhH
Q 001791 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMP 547 (1012)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~--~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~ 547 (1012)
.+ ++..++..|+++|.+++.+- +.....+ ...++.|+.++++.+...++.++.++.++....... .++
T Consensus 498 ~s-~~~~iqeeAawAL~NLa~~~--~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-------~I~ 567 (2102)
T PLN03200 498 ET-GSQKAKEDSATVLWNLCCHS--EDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-------TIS 567 (2102)
T ss_pred cC-CCHHHHHHHHHHHHHHhCCc--HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-------HHH
Confidence 98 88999999999999998742 1222333 246788899999999999999999999997654322 334
Q ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhh---HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHh
Q 001791 548 FLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDD---AKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL 624 (1012)
Q Consensus 548 ~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~---~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 624 (1012)
.+..++.. ++...+..+++.++.+......+.+... ....++.+.+++.++ ++..++.+..++.+++..-
T Consensus 568 ~Lv~LLls----dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg---s~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 568 QLTALLLG----DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS---KEETQEKAASVLADIFSSR 640 (2102)
T ss_pred HHHHHhcC----CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCC
Confidence 55555543 2234566678888777554332211111 123566666765532 3456667777777776533
Q ss_pred cCCcc-cchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhh
Q 001791 625 GQDFL-PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK 703 (1012)
Q Consensus 625 ~~~~~-~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~ 703 (1012)
.+... ......+|.++..+... ..+.+..|..+|+.+.....
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~-------------------------------------~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNN-------------------------------------TEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcC-------------------------------------ChHHHHHHHHHHHHHHhCCC
Confidence 22211 11234566676666421 12234567778887775432
Q ss_pred hcc-cccHH-HHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHH-HHHHHHHHHHHHhcCC
Q 001791 704 EGF-FPWID-QVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQL-SDFIIPALVEALHKEP 780 (1012)
Q Consensus 704 ~~~-~p~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 780 (1012)
..- .-++. .+++.++.+++. .+.+++..|+.+|.+++.... ....+ -...++.|++.++++.
T Consensus 684 ~~q~~~~v~~GaV~pL~~LL~~-~d~~v~e~Al~ALanLl~~~e--------------~~~ei~~~~~I~~Lv~lLr~G~ 748 (2102)
T PLN03200 684 ENRKVSYAAEDAIKPLIKLAKS-SSIEVAEQAVCALANLLSDPE--------------VAAEALAEDIILPLTRVLREGT 748 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHHhC-CChHHHHHHHHHHHHHHcCch--------------HHHHHHhcCcHHHHHHHHHhCC
Confidence 221 11122 256667777775 478999999999999987531 11112 2346788888887764
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCC-CHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHH
Q 001791 781 DTEICASMLDSLNECIQISGPLL-DEGQV--RSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVF 857 (1012)
Q Consensus 781 ~~~~~~~~~~~l~~~~~~~g~~~-~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~ 857 (1012)
.+.+.....+|..+.+...... ..+.. .-.+..+...|.. .|.| ....
T Consensus 749 -~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~--------------~~~~--------------~~~~ 799 (2102)
T PLN03200 749 -LEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNS--------------TDLD--------------SSAT 799 (2102)
T ss_pred -hHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhc--------------CCcc--------------hhhH
Confidence 4567677777776655432210 01111 1122333333322 1111 1112
Q ss_pred HHHHHHHHHHHHH-ccccch-hhHHH------HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhh---hHhHHH
Q 001791 858 DQVGEILGTLIKT-FKAAFL-PFFDE------LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY---YETYLP 926 (1012)
Q Consensus 858 ~~~~~~l~~l~~~-~~~~~~-~~~~~------ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~l~~ 926 (1012)
..+.+.++.+++. .+..+. |-|.. -+..+..++ ....+.+...|+.++..+++..+.-+..+ -+..+.
T Consensus 800 ~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~ 878 (2102)
T PLN03200 800 SEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCIS 878 (2102)
T ss_pred HHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHH
Confidence 2477888888874 223331 11111 244555566 45677788899999999998866554443 345566
Q ss_pred HHHhh-ccCCChhHHHHHHHHHHHHHhhcCCch------HHHHHHHHHHHHHhhcCCC
Q 001791 927 FLLEA-CNDENQDVRQAAVYGLGVCAEFGGSVV------KPLVGEALSRLNVVIRHPN 977 (1012)
Q Consensus 927 ~~l~~-l~~~~~~vr~~a~~~lg~l~~~~~~~~------~~~~~~il~~L~~~l~~~~ 977 (1012)
++..+ +++.+.+||-.++..|-+.++...+.. ..|...+++.|.+++..+.
T Consensus 879 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 936 (2102)
T PLN03200 879 SLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNS 936 (2102)
T ss_pred HHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccC
Confidence 66655 567889999999988888888876542 2456688999999987644
No 24
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.3e-14 Score=152.79 Aligned_cols=601 Identities=16% Similarity=0.214 Sum_probs=368.9
Q ss_pred ChhHHHHHHHHhcCC-ChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 20 DSAPFETLISHLMST-SNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~-d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
+.+.++.++..++++ +.+....++++|+..+. .|.+| ..-.++++.+..+++|.++++.|.-.+... |+..++
T Consensus 5 ~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~-S~Q~w-~~s~~llQ~~k~~evqyFGAltL~~ki~~~----~e~~~~ 78 (982)
T KOG2022|consen 5 LIATVEELVTTLYSHRNHENDAITQKWLQDAQC-SQQGW-HFSWQLLQPDKSSEVQYFGALTLHDKINTR----WEECPA 78 (982)
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hHHHH-HHHHHHcCCCchhHHHHHhHHHHHHHHHhh----hccCCh
Confidence 357888999999887 77889999999999998 67776 677788877888999999999999999987 999999
Q ss_pred HHHHHHHHHHHHHHhhc--chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCC-H----HHH-HHHHHHHHHh
Q 001791 99 HTQSSLKSMLLQSIQLE--SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDS-V----KLQ-ESAFLIFAQL 170 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~--~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~-~----~~r-~~al~~l~~l 170 (1012)
+..+.++-.+++.+... ....|-+.++-+++.++-+..| +.||.-+..+++.++.+. + ..+ ..-+..|..+
T Consensus 79 ~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~-d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~ 157 (982)
T KOG2022|consen 79 NEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVP-DLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLSFM 157 (982)
T ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHcc-ccCCchHHHHHHHHhcccCccccchhhHHHHHHHhccC
Confidence 99999999999877642 3445666677777777776677 699998888888886532 1 222 2233444444
Q ss_pred hhhHh-------------hhccccHHHHHHHHHHhhcCCC--Ch-----HHHHHHHHHHHHHHHhhcCcchHhHHHhhHH
Q 001791 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSN--NP-----DVKIAALNAVINFIQCLTSSADRDRFQDLLP 230 (1012)
Q Consensus 171 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~--~~-----~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 230 (1012)
..+.. .++......+++++...++... .+ -.+..+++|+..++....-+. .....+..
T Consensus 158 p~e~q~~~l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i~~~~--~~c~~i~~ 235 (982)
T KOG2022|consen 158 PAEFQHVTLPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYISLTG--MDCDQITQ 235 (982)
T ss_pred cHhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHhcccc--ccHHHHHH
Confidence 33321 1122233444445555554431 12 456789999999888543110 00000000
Q ss_pred HHHHHHH---------------------------------------------------------H------HHhcCC--h
Q 001791 231 LMMRTLT---------------------------------------------------------E------SLNNGN--E 245 (1012)
Q Consensus 231 ~ll~~l~---------------------------------------------------------~------~l~~~~--~ 245 (1012)
.++..+. + ...+.+ .
T Consensus 236 ~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~~ 315 (982)
T KOG2022|consen 236 VLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKIQEEENADASE 315 (982)
T ss_pred HHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 1111100 0 011111 1
Q ss_pred HHHHHHHHHHHHHHccchHHHHHh---------HHHHHHHHHHhhccC---CcchHHHHHHHHHHHHHHHhh------hc
Q 001791 246 ATAQEALELLIELAGTEPRFLRRQ---------LVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR------ER 307 (1012)
Q Consensus 246 ~~~~~~~~~L~~l~~~~~~~~~~~---------~~~i~~~l~~~~~~~---~~~~~vr~~a~~~l~~l~~~~------~~ 307 (1012)
+.-...+.+....+++....+..+ +..++..++...+.+ -.++.+....+.+|..+.+.- ..
T Consensus 316 e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~~e~~ 395 (982)
T KOG2022|consen 316 EEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTINETQ 395 (982)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhhhccC
Confidence 122222222223333332222222 223344444433322 234556667888999887641 00
Q ss_pred cchhhhcchhhHHHHHHHHHHhhccCCCC--ccccCCCCCCccccCCcc-hhhHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 001791 308 APGMMRKLPQFINRLFAILMSMLLDIEDD--PLWHSAETEDEDAGESSN-YSVGQECLDRLAIALGGNTIVPVASEQLPA 384 (1012)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~--~~~~~~~~~~ed~~~~~~-~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 384 (1012)
.+.......+...+++..++..+.-+.+. ..|.+++.+ .+.. |+...+++...-..+| +.++..+...+.+
T Consensus 396 ~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e-----~F~~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q 469 (982)
T KOG2022|consen 396 QIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSRE-----QFESYRKDISDLLMSSYSILG-DGLLDFLIDTLEQ 469 (982)
T ss_pred CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHH-----HHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 11000001134445555555555544322 134433211 2222 3334445555555566 6788888888888
Q ss_pred hhCCCC-----hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001791 385 YLAAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1012)
Q Consensus 385 ~l~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1012)
++.+.+ |..-++++..+..+++..+......++.++...... ++-.++..-..+...+|.++.+++.+. .|+
T Consensus 470 ~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P--~~l 547 (982)
T KOG2022|consen 470 ALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHP--MYL 547 (982)
T ss_pred hhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCC--ccc
Confidence 888765 999999999999999998876666666666554443 344588999999999999999998875 689
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHhH-
Q 001791 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQ- 535 (1012)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~- 535 (1012)
+..+|.+++.+.. ++.-..+...+..+++.+. +.+.||.+.++..+-..+...+ ...|..++.++|.+.....
T Consensus 548 n~sl~~L~~~Lh~---sk~s~q~i~tl~tlC~~C~-~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~p 623 (982)
T KOG2022|consen 548 NPSLPLLFQGLHN---SKESEQAISTLKTLCETCP-ESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKP 623 (982)
T ss_pred CchHHHHHHHhcC---chHHHHHHHHHHHHHHhhh-hhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccH
Confidence 9999999999976 3445667778999999998 5688999999999988887653 6788999999999988776
Q ss_pred hhhHhhHhhhhHHHHHHHhhcc--ccc--cchhhHH-HHHHHHHHHhhhC-h----------h--------hhhhhHHHH
Q 001791 536 EHFQKYYDAVMPFLKAILVNAT--DKS--NRMLRAK-SMECISLVGMAVG-K----------D--------KFRDDAKQV 591 (1012)
Q Consensus 536 ~~~~~~~~~il~~l~~~l~~~~--~~~--~~~lr~~-a~~~l~~l~~~~~-~----------~--------~~~~~~~~i 591 (1012)
+....|+..++..+..-++... +.+ ...+|.. -+.+++.+..++- + . .......++
T Consensus 624 Ee~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~ 703 (982)
T KOG2022|consen 624 EEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKA 703 (982)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHH
Confidence 5566799888888877766531 111 2222221 2445555554431 0 0 111223445
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCc-ccchhhhhHHHHHH
Q 001791 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDF-LPYMSVVMPPLLQS 642 (1012)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~i~~~ll~~ 642 (1012)
++++-.+..-..+. +.+.+.++..+..-.+..+..| .|+++.+.+.+...
T Consensus 704 i~~~~kv~s~~~~~-s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~ 754 (982)
T KOG2022|consen 704 IPVFEKVLSMWLGL-SDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRF 754 (982)
T ss_pred HHHHHHHHHHHhcc-hhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHh
Confidence 55554432212222 2233443333333344455667 78888888877773
No 25
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=99.82 E-value=1.6e-14 Score=149.69 Aligned_cols=688 Identities=15% Similarity=0.201 Sum_probs=407.1
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhh-cCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCC--Cccc-
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQ-QDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDS--FLWP- 94 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~-~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~--~~w~- 94 (1012)
+.-.+..+|-...+.++.-|..+-..|..=.- --|......++-++.+ +-+..-|++-..++-+++..-+. .-+.
T Consensus 166 ~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvh 245 (975)
T COG5181 166 DERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVH 245 (975)
T ss_pred chHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhccccccccee
Confidence 44566677777788888999999998864332 1223333444444444 55667788887777776654210 0000
Q ss_pred ---------CCCHHHHH-----HHHHHHHH--HHhh----------cchHhHHHHHHHHHHHHHhcccCCCCcchHHHHH
Q 001791 95 ---------RLSLHTQS-----SLKSMLLQ--SIQL----------ESAKSISKKLCDTVSELASNILPENGWPELLPFM 148 (1012)
Q Consensus 95 ---------~l~~~~~~-----~i~~~ll~--~l~~----------~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l 148 (1012)
.++++.+. +|...|.. +|+. ..++-+|+..+.+.+.++.+. ..++++|+|
T Consensus 246 kILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~al----gv~~llpfl 321 (975)
T COG5181 246 KILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADAL----GVEELLPFL 321 (975)
T ss_pred eEEEEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhh----CcHHHHHHH
Confidence 01222211 11112221 1111 257789999999999999874 678999999
Q ss_pred HHhhcCC-CHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHh
Q 001791 149 FQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQD 227 (1012)
Q Consensus 149 ~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~ 227 (1012)
-....+. +|+.|+.++++...+|+..+....+++..++..+..++.|. +..||.-+..++..+++.. .+...+.|.
T Consensus 322 ~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~-~~~vRi~tA~alS~lae~~-~Pygie~fd- 398 (975)
T COG5181 322 EALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDR-SRFVRIDTANALSYLAELV-GPYGIEQFD- 398 (975)
T ss_pred HHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhcc-ceeeeehhHhHHHHHHHhc-CCcchHHHH-
Confidence 9998876 89999999999999999999888888999999999999998 8899999999999888864 222334344
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc-chHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhh
Q 001791 228 LLPLMMRTLTESLNNGNEATAQEALELLIELAGT-EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE 306 (1012)
Q Consensus 228 ~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~ 306 (1012)
.++..+++..+.........-+++.+.++-. .|++..-+.....+.++..++ +++++.+...+.+...+.+...
T Consensus 399 ---~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~--spdeemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 399 ---EVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFK--SPDEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred ---HHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhC--CchhhcchhHHHHHHHHhccCC
Confidence 4555666544332222222223333222221 133333344556666666654 3355555544444444444322
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhccC--C-CCccccC-------------CC------CCCccccCC-cchhhHHHHHH
Q 001791 307 RAPGMMRKLPQFINRLFAILMSMLLDI--E-DDPLWHS-------------AE------TEDEDAGES-SNYSVGQECLD 363 (1012)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~--~-~~~~~~~-------------~~------~~~ed~~~~-~~~~~a~~~l~ 363 (1012)
..|.. +..++.|.++...-.. . |.+.+.. +. -+.. .++. ..++.+..+.+
T Consensus 474 ~tp~~------lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~-~De~ep~r~m~a~~vs 546 (975)
T COG5181 474 DTPWK------LRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYY-SDEPEPYRKMNAGLVS 546 (975)
T ss_pred CCHHH------HHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhc-cCCcchhhhhhhHHHH
Confidence 22211 2233333333221100 0 0000000 00 0000 0011 12334444445
Q ss_pred HHHHHcCCCcchHH----HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001791 364 RLAIALGGNTIVPV----ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1012)
Q Consensus 364 ~l~~~~~~~~~~~~----~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1012)
.+...+|...+-+. ++..+...++.++-.+. -.+-+++.......-..++|++.++..++..|+++.|.||..|+
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aa 625 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAA 625 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHH
Confidence 44444443222222 22222222222111100 00112222222222244589999999999999999999999999
Q ss_pred HHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhH
Q 001791 440 NAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMV 519 (1012)
Q Consensus 440 ~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v 519 (1012)
...+.++..+...--...+..+=..|++.+.. ..|.|-...+.|+..+....+-..+.|-...|+|.|...+.+.+.++
T Consensus 626 dl~~sl~~vlk~c~e~~~l~klg~iLyE~lge-~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv 704 (975)
T COG5181 626 DLMGSLAKVLKACGETKELAKLGNILYENLGE-DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKV 704 (975)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhHHHHHhcCc-ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHH
Confidence 99999888775332234566666778899988 88999999999999998877766788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhhH--hhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001791 520 QEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1012)
Q Consensus 520 ~~~a~~~l~~l~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1012)
....+..+|.++...++... .+...... |.+.+.. -...+|..|.+++|.|++++|++ +++..|++
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRIcfe-Lvd~Lks----~nKeiRR~A~~tfG~Is~aiGPq-------dvL~~Lln 772 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRICFE-LVDSLKS----WNKEIRRNATETFGCISRAIGPQ-------DVLDILLN 772 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHHH----hhHHHHHhhhhhhhhHHhhcCHH-------HHHHHHHh
Confidence 99999999999987765322 22222222 2233332 23357888999999999999975 46666665
Q ss_pred -HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCc
Q 001791 598 -LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1012)
Q Consensus 598 -l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1012)
+..+ +...|....-+++-+++.+|. | .++|.|+.-... |+..
T Consensus 773 nLkvq----eRq~RvctsvaI~iVae~cgp----f--sVlP~lm~dY~T-Pe~n-------------------------- 815 (975)
T COG5181 773 NLKVQ----ERQQRVCTSVAISIVAEYCGP----F--SVLPTLMSDYET-PEAN-------------------------- 815 (975)
T ss_pred cchHH----HHHhhhhhhhhhhhhHhhcCc----h--hhHHHHHhcccC-chhH--------------------------
Confidence 2110 011121222244445555543 2 455665543211 1111
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCC
Q 001791 677 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGR 756 (1012)
Q Consensus 677 ~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ 756 (1012)
|. ..-+++++.+....+..-..|+-.+.+.+...+.+. +..-|+.|...+.+++-.| +++.
T Consensus 816 ---VQ-------nGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr-D~vhRqta~nvI~Hl~Lnc--------~gtg 876 (975)
T COG5181 816 ---VQ-------NGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLNC--------PGTG 876 (975)
T ss_pred ---HH-------HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcCC--------CCcc
Confidence 11 223456666666666656667777777777777764 7788999999888887665 3444
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCC
Q 001791 757 NESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1012)
Q Consensus 757 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1012)
..+..-++++.+.|.++ ++.+.+...+..++..+....|+
T Consensus 877 ~eda~IHLlNllwpNIl-----e~sPhvi~~~~Eg~e~~~~~lg~ 916 (975)
T COG5181 877 DEDAAIHLLNLLWPNIL-----EPSPHVIQSFDEGMESFATVLGS 916 (975)
T ss_pred cHHHHHHHHHHhhhhcc-----CCCcHHHHHHHHHHHHHHHHhcc
Confidence 56666677766666544 34667777777777766666665
No 26
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.78 E-value=4.7e-14 Score=154.19 Aligned_cols=538 Identities=14% Similarity=0.147 Sum_probs=304.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccC-----C
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPR-----L 96 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~-----l 96 (1012)
.....+...+++|+..++.||+.|+++.+ +++ |...|..+..+ ..+-.+|..|.+.+||.+.++ |.. +
T Consensus 5 ~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~-q~g-F~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~----W~~~~~~~i 78 (947)
T COG5657 5 PVVKQLDLAQSPDPPSVKCAEERLRQWEK-QHG-FALKLLSINLSAFNSMSLRWAALIQFKNYIDKH----WREENGNSI 78 (947)
T ss_pred HHHHHHHhhcCCCCchHhhHHHHHHhhhc-ccc-HHHHHHHHHhccccchhHHHHHHHHHHhhHHHH----hhhhcccCC
Confidence 44455677899999999999999999999 565 66888888876 578999999999999999998 653 5
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh
Q 001791 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1012)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1012)
.++....||..++..+.+ .+..+.-+.+.+++.||+.++| ..||+++|.+...+++.+...-.+.+.++..+.+...+
T Consensus 79 ~p~e~v~IR~~l~~lii~-s~n~l~iq~a~avs~IA~~DfP-deWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r~ 156 (947)
T COG5657 79 LPDENVLIRDELFSLIIS-SSNQLQIQNALAVSRIARLDFP-DEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLRR 156 (947)
T ss_pred CCccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHHhccCc-ccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhh
Confidence 555666999999999986 6667777899999999999999 79999999999999998877778888888888877543
Q ss_pred h------ccccHHHHHHHHHHhhcCC-CChHHHH-----------HHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHH
Q 001791 177 T------LTPHLKHLHAVFLNCLTNS-NNPDVKI-----------AALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTE 238 (1012)
Q Consensus 177 ~------~~~~~~~l~~~l~~~l~~~-~~~~vr~-----------~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 238 (1012)
. +....+.+.+++.+.+... ..+..+. .+++.+..+... .-...++.+.++++..+..+..
T Consensus 157 l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~-~~qdi~eFfEd~l~~~m~~F~k 235 (947)
T COG5657 157 LFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDL-GFQDIPEFFEDNLDKFMEHFCK 235 (947)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHH
Confidence 2 2223344444444433221 1122211 223333322221 1122356677888888888887
Q ss_pred HHhcCChHHHH-------------HHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCC---cchHHHHHHHHHHHHHH
Q 001791 239 SLNNGNEATAQ-------------EALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES---LEEGTRHLAIEFVITLA 302 (1012)
Q Consensus 239 ~l~~~~~~~~~-------------~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~vr~~a~~~l~~l~ 302 (1012)
.+...++..+. ..+..+.-....+|..+.+++-+.++.++..++.-. .-+.+...++..+....
T Consensus 236 lls~~~~~lq~~~le~~~~~~l~~~i~e~f~ly~t~yp~~it~li~dfv~~vw~~lttit~~~~~d~Lv~k~l~~l~~v~ 315 (947)
T COG5657 236 LLSYSNPVLQKDCLEDCVYFKLKGSICEIFNLYTTKYPEVITYLIYDFVEIVWNLLTTITRPYIRDYLVSKSLTVLINVI 315 (947)
T ss_pred HHhhcchhhhhhhcccceeeeecccHHHHHHHHhhccHHHhhHHHHHHHHHHHHHHHhhcCccccchhhhhHHHHHHHhh
Confidence 77644444443 245556666677788888777777777766654321 12233444555555555
Q ss_pred Hhhhccchhhhcch----hhHHHHHHHHHHhh--ccCCCCccccCCCCC-----CccccCCcchhhHHHHHHHHHHHcCC
Q 001791 303 EARERAPGMMRKLP----QFINRLFAILMSML--LDIEDDPLWHSAETE-----DEDAGESSNYSVGQECLDRLAIALGG 371 (1012)
Q Consensus 303 ~~~~~~~~~~~~~~----~~~~~l~~~l~~~l--~~~~~~~~~~~~~~~-----~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1012)
++ ..+....-+. +.+..++..++... ...+|-+.|..+..+ ...+-+...+.++...+..+-..++
T Consensus 316 k~--~irk~~e~l~n~~~~~~~~lvd~l~l~n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~- 392 (947)
T COG5657 316 KY--PIRKTAEVLSNVSENLINNLVDLLILPNLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFG- 392 (947)
T ss_pred cc--ccHHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHh-
Confidence 42 0111111112 23344444443221 123334556543321 0011133345566677777766666
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh-----hcHHHHHHhHHHHHHHHHhhCCCC----ChhHHH-HHHHH
Q 001791 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE-----GCAKVMVKNLEQVLSMVLNSFRDP----HPRVRW-AAINA 441 (1012)
Q Consensus 372 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~-----~~~~~~~~~l~~i~~~l~~~l~d~----~~~vr~-~a~~~ 441 (1012)
+-+.+.+...+.+....+ +....+......++. ..-..+.+..+-.-..+.+-+-++ +.+++. .+...
T Consensus 393 ~i~~~~~~~~ie~~~t~P--~~~d~~~~~~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i 470 (947)
T COG5657 393 RIAVGHELTVIESEATTP--NILDEARQLFAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYI 470 (947)
T ss_pred hHhHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchh
Confidence 556667777777666655 333333333322221 111122222222223333333332 233322 22222
Q ss_pred HHHhhhhhchhH-Hhh-hhhhhHHHHHhhcCC-CCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCC-h
Q 001791 442 IGQLSTDLGPDL-QNQ-FHPQVLPALAGAMDD-FQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-Q 517 (1012)
Q Consensus 442 l~~l~~~~~~~~-~~~-~~~~il~~l~~~l~~-~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~-~ 517 (1012)
+..-........ ... +..+.+........| ..--.++.+....+....-.-. ....-++.++-.+.+...... .
T Consensus 471 ~~~r~~l~~~~~~~~~fl~~~~F~~yt~~~id~~~lLT~~~a~~t~~~~~n~~~~--~~~~~lenl~~lvl~~~as~~~~ 548 (947)
T COG5657 471 LTFRNQLDSSELSESKFLASQFFVNYTTACIDAVVLLTTREAYSTIFDDWNFSVC--SKIGLLENLILLVLSLMASPSSL 548 (947)
T ss_pred eechhhhhhhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHHHHHhcCCcchh
Confidence 111111101110 000 111111122222222 0012334444443333322111 233556666666666666554 5
Q ss_pred hHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccc-cchhhHHHHHHHHHHH
Q 001791 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKS-NRMLRAKSMECISLVG 576 (1012)
Q Consensus 518 ~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-~~~lr~~a~~~l~~l~ 576 (1012)
..+...+++++.+....++...|..+.+++.+.+++....... ...+-...++.++.++
T Consensus 549 ~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~~knps~p~~~h~~fe~I~al~ 608 (947)
T COG5657 549 EEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEINAKNPSNPQFAHYTFEDIGALV 608 (947)
T ss_pred HHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 6788899999999999999999988999999998876533322 2223334455555554
No 27
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.3e-12 Score=139.75 Aligned_cols=495 Identities=15% Similarity=0.201 Sum_probs=283.5
Q ss_pred HHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhccc
Q 001791 60 KLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNIL 136 (1012)
Q Consensus 60 ~l~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~ 136 (1012)
.+.+++.. +.++..|..|...|++.=+. + .....+++.+.++ .+-.||.+++.-+...+.+.+
T Consensus 5 ~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~---------p-----gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W 70 (1010)
T KOG1991|consen 5 SLLQIFRATIDSDAKERKAAEQQLNQLEKQ---------P-----GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSW 70 (1010)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcC---------C-----cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcC
Confidence 34444433 66799999999999986432 1 2445778877764 456789999999999888766
Q ss_pred CCCCcc------------hHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHH
Q 001791 137 PENGWP------------ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIA 204 (1012)
Q Consensus 137 ~~~~~~------------~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~ 204 (1012)
+.+.-| -+-..++..+.......|..-..++..+... ++-..++.+++.+...|+++ +...-..
T Consensus 71 ~~~~~~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~---D~p~~Wp~l~d~i~~~Lqs~-~~~~vy~ 146 (1010)
T KOG1991|consen 71 SSHEAPGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKA---DYPEQWPGLLDKIKNLLQSQ-DANHVYG 146 (1010)
T ss_pred CccCCCCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhc---CCcccchhHHHHHHHHhcCc-chhhHHH
Confidence 543111 1223344444333444444444455444443 23346899999999999998 7788889
Q ss_pred HHHHHHHHHHhhcC--cc----hHhHHHhhHHHHHHHHHHHHhcCChHHH---HHHHHHHHHHHccc-hHHHH--HhHHH
Q 001791 205 ALNAVINFIQCLTS--SA----DRDRFQDLLPLMMRTLTESLNNGNEATA---QEALELLIELAGTE-PRFLR--RQLVD 272 (1012)
Q Consensus 205 a~~~l~~~~~~~~~--~~----~~~~~~~~~~~ll~~l~~~l~~~~~~~~---~~~~~~L~~l~~~~-~~~~~--~~~~~ 272 (1012)
|+-|+..++..++. .+ -...+..++|.+++...+.+..++.... ...++++..++... |..+. ..+..
T Consensus 147 aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~ 226 (1010)
T KOG1991|consen 147 ALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTS 226 (1010)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHH
Confidence 99999999987651 11 2345667888888888888876655433 33444444443211 22221 12345
Q ss_pred HHHHHHHhhccCC------cchH---------HHHHHHHHHHHHHHhhhccchh----hhc-----chhhHHHHHHHHHH
Q 001791 273 VVGSMLQIAEAES------LEEG---------TRHLAIEFVITLAEARERAPGM----MRK-----LPQFINRLFAILMS 328 (1012)
Q Consensus 273 i~~~l~~~~~~~~------~~~~---------vr~~a~~~l~~l~~~~~~~~~~----~~~-----~~~~~~~l~~~l~~ 328 (1012)
.++..+.+++.+- .+++ .+.=|+..+..+.+--+ .|.. .+. ..++...++...++
T Consensus 227 W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg-~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk 305 (1010)
T KOG1991|consen 227 WMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYG-SPSLVVPEYKEFAQMFLKNFAQGILEVFLK 305 (1010)
T ss_pred HHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhC-CccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666554321 1222 33445666666655311 1111 011 12334444444444
Q ss_pred hhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC----------C---------C
Q 001791 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA----------A---------P 389 (1012)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~----------~---------~ 389 (1012)
.+..... ..|. .-++-..++..+...+..+.++..+-|.++-.+. + +
T Consensus 306 ~l~~~~~-~~yl-------------s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP 371 (1010)
T KOG1991|consen 306 ILEQWRQ-QLYL-------------SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDP 371 (1010)
T ss_pred HHHHHHh-cccC-------------CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCH
Confidence 4332211 2222 1133344455555544444455555555544332 1 1
Q ss_pred C-------------hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC--------CCChhHHHHHHHHHHHhhhh
Q 001791 390 E-------------WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--------DPHPRVRWAAINAIGQLSTD 448 (1012)
Q Consensus 390 ~-------------~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--------d~~~~vr~~a~~~l~~l~~~ 448 (1012)
. ..-+-||...+..++..-++ ..++.+++.+...+. ..+++-+..|+..+|.+++.
T Consensus 372 ~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~k---e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~ 448 (1010)
T KOG1991|consen 372 YEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGK---ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASI 448 (1010)
T ss_pred HHHHHhcCchhcccCCCcHHHHHHHHHHHHhcch---hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHH
Confidence 1 12345666666666665432 345555555555443 34678888999999999977
Q ss_pred hchhH--HhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh-cCCcccccCcHHHHHHHHHHHhh-cCChhHHHHHH
Q 001791 449 LGPDL--QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE-NCTPEILTPYLDGIVSKLLVLLQ-NGKQMVQEGAL 524 (1012)
Q Consensus 449 ~~~~~--~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~-~~~~~~l~~~~~~il~~l~~~l~-~~~~~v~~~a~ 524 (1012)
+...- ....-.-+++.++-.+++ +.-..|..||+.++.+.+ .++. ...+..++....+++. +.+.-||..|.
T Consensus 449 L~K~s~~~~~mE~flv~hVfP~f~s-~~g~Lrarac~vl~~~~~~df~d---~~~l~~ale~t~~~l~~d~~lPV~VeAa 524 (1010)
T KOG1991|consen 449 LLKKSPYKSQMEYFLVNHVFPEFQS-PYGYLRARACWVLSQFSSIDFKD---PNNLSEALELTHNCLLNDNELPVRVEAA 524 (1010)
T ss_pred HccCCchHHHHHHHHHHHhhHhhcC-chhHHHHHHHHHHHHHHhccCCC---hHHHHHHHHHHHHHhccCCcCchhhHHH
Confidence 63321 012223456667777777 777899999999999983 4442 2445666666666666 55556776666
Q ss_pred HHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCC
Q 001791 525 TALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQME 604 (1012)
Q Consensus 525 ~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~ 604 (1012)
-++..++...... ++.+.++++++|+-++.+.+ .++
T Consensus 525 lALq~fI~~~~~~-------------------------------------------~e~~~~hvp~~mq~lL~L~n-e~E 560 (1010)
T KOG1991|consen 525 LALQSFISNQEQA-------------------------------------------DEKVSAHVPPIMQELLKLSN-EVE 560 (1010)
T ss_pred HHHHHHHhcchhh-------------------------------------------hhhHhhhhhHHHHHHHHHHH-hcc
Confidence 6666665443311 13456666666666666544 222
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHh
Q 001791 605 TDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSA 643 (1012)
Q Consensus 605 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~ 643 (1012)
. +.+..++..++..+++++.||...+...|.+..
T Consensus 561 n-----d~Lt~vme~iV~~fseElsPfA~eL~q~La~~F 594 (1010)
T KOG1991|consen 561 N-----DDLTNVMEKIVCKFSEELSPFAVELCQNLAETF 594 (1010)
T ss_pred h-----hHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 1 133445666777777888888777777665554
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=3e-12 Score=147.04 Aligned_cols=650 Identities=16% Similarity=0.167 Sum_probs=395.2
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 001791 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1012)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~ 261 (1012)
...+...+...+.++ +++.|.++.--|..++.++.+ ........+.+...+...+.++|+-.+..|.+-++-+-+.
T Consensus 816 ~~~~~~~l~~~~~s~-nph~R~A~~VWLLs~vq~l~~---~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYel 891 (1702)
T KOG0915|consen 816 ETIILKLLDTLLTSP-NPHERQAGCVWLLSLVQYLGQ---QPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYEL 891 (1702)
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHhcc---CchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEec
Confidence 445556666666776 999999999888888888753 2223345567778888888877766666665555543332
Q ss_pred chHHH-HHhHHHHHHHHHHhhccC----CcchHH-------------HHHHHHHHHHHHHhhhccchhhhcchhhHHHHH
Q 001791 262 EPRFL-RRQLVDVVGSMLQIAEAE----SLEEGT-------------RHLAIEFVITLAEARERAPGMMRKLPQFINRLF 323 (1012)
Q Consensus 262 ~~~~~-~~~~~~i~~~l~~~~~~~----~~~~~v-------------r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (1012)
...-+ ...+..+++.+.. .+.. +.+.++ .....+=+.+++.. +.+ +.++
T Consensus 892 gd~~~k~~LV~sL~~tl~~-Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd----------l~q--PdLV 958 (1702)
T KOG0915|consen 892 GDSSLKKSLVDSLVNTLTG-GKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD----------LGQ--PDLV 958 (1702)
T ss_pred CCchhHHHHHHHHHHHHhc-cccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh----------cCC--hHHH
Confidence 22212 2233344443332 0000 000000 00111111222220 000 1222
Q ss_pred HHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhCCCChhHHHHHHHHH
Q 001791 324 AILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIAL 401 (1012)
Q Consensus 324 ~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l 401 (1012)
...++.... ..-|. .++-|.-.++.+++..+. +++++.++|.+..+--|++.+++.+-....
T Consensus 959 YKFM~LAnh---~A~wn-------------Sk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW 1022 (1702)
T KOG0915|consen 959 YKFMQLANH---NATWN-------------SKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIW 1022 (1702)
T ss_pred HHHHHHhhh---hchhh-------------cccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHH
Confidence 222222211 12233 333344455555554431 356777888888888899999999999999
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHH
Q 001791 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHA 481 (1012)
Q Consensus 402 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a 481 (1012)
+.++......+..|+..|+.-++..+.+..++||.++|.++..+...-+.....+.+++++..++...+| =...||.+|
T Consensus 1023 ~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD-IKEsVR~aa 1101 (1702)
T KOG0915|consen 1023 NALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD-IKESVREAA 1101 (1702)
T ss_pred HHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999988888899999999999999999999999999999999998765444467788899999988888 566777655
Q ss_pred ---HHHHHHHhhcCCcc----cccCcHHHHHHHHHH--HhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHH
Q 001791 482 ---ASAVLNFSENCTPE----ILTPYLDGIVSKLLV--LLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1012)
Q Consensus 482 ---~~al~~l~~~~~~~----~l~~~~~~il~~l~~--~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~ 552 (1012)
+.+++.++-..... .-...++.++|.|+. .+ +.-..+|..++..+..+++..|..+.||++.++|.|.+.
T Consensus 1102 ~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~ 1180 (1702)
T KOG0915|consen 1102 DKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNA 1180 (1702)
T ss_pred HHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHH
Confidence 56666666443211 112345556666654 23 445789999999999999999999999999999999988
Q ss_pred Hhhccccccch--hh-----HHHHHHHHHHH-hhhC----hhhhhhh-----HHHHHHHHHHHhcCCCCCCCchhHHHHH
Q 001791 553 LVNATDKSNRM--LR-----AKSMECISLVG-MAVG----KDKFRDD-----AKQVMEVLMSLQGSQMETDDPTTSYMLQ 615 (1012)
Q Consensus 553 l~~~~~~~~~~--lr-----~~a~~~l~~l~-~~~~----~~~~~~~-----~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 615 (1012)
+......--.. +| ..|++....=+ +..+ -+...+| ++++++-+.++...++... -+..+..
T Consensus 1181 ~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~--Tkvg~A~ 1258 (1702)
T KOG0915|consen 1181 YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLG--TKVGCAS 1258 (1702)
T ss_pred ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC--cchhHHH
Confidence 64321110000 11 11222211110 1000 0011122 4556666666444333322 3445666
Q ss_pred HHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHH
Q 001791 616 AWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (1012)
Q Consensus 616 ~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l 695 (1012)
++..++..+|.++.||.+.++..++..+.. .+ ...+..-..+.
T Consensus 1259 fI~~L~~r~~~emtP~sgKll~al~~g~~d-RN------------------------------------esv~kafAsAm 1301 (1702)
T KOG0915|consen 1259 FISLLVQRLGSEMTPYSGKLLRALFPGAKD-RN------------------------------------ESVRKAFASAM 1301 (1702)
T ss_pred HHHHHHHHhccccCcchhHHHHHHhhcccc-cc------------------------------------HHHHHHHHHHH
Confidence 788899999999999999999988877632 10 11233334466
Q ss_pred HHHHHHhhh-cccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Q 001791 696 CCYADELKE-GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVE 774 (1012)
Q Consensus 696 ~~i~~~~~~-~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 774 (1012)
|.+++.... .+..+++.++..+ +.. .++.++.++.++.++.... .+.++.+.+.++|.++=
T Consensus 1302 G~L~k~Ss~dq~qKLie~~l~~~---l~k--~es~~siscatis~Ian~s-------------~e~Lkn~asaILPLiFL 1363 (1702)
T KOG0915|consen 1302 GYLAKFSSPDQMQKLIETLLADL---LGK--DESLKSISCATISNIANYS-------------QEMLKNYASAILPLIFL 1363 (1702)
T ss_pred HHHHhcCChHHHHHHHHHHHHHH---hcc--CCCccchhHHHHHHHHHhh-------------HHHHHhhHHHHHHHHHH
Confidence 666665443 3444444433333 222 3445566777776655443 46678888889997765
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHH
Q 001791 775 ALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEE 854 (1012)
Q Consensus 775 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~ 854 (1012)
...++ +.+ ......++|....++ +...++-+...+...+..+.. .+..|
T Consensus 1364 a~~ee-~Ka----~q~Lw~dvW~e~vsg-gagtvrl~~~eiLn~iceni~-------------------------nn~~w 1412 (1702)
T KOG0915|consen 1364 AMHEE-EKA----NQELWNDVWAELVSG-GAGTVRLYLLEILNLICENIT-------------------------NNESW 1412 (1702)
T ss_pred HHhHH-HHH----HHHHHHHHHHHhCCC-CcchhhhhHHHHHHHHHHHhc-------------------------cchHH
Confidence 55443 222 234566777765552 112222233333333333221 11457
Q ss_pred HHHHHHHHHHHHHHHHccccch-hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhcc
Q 001791 855 EVFDQVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 933 (1012)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~ 933 (1012)
.++..++..+..++........ |++..+.+.+...+ .++.++.+...+..+...++.++..+..-++.++.+......
T Consensus 1413 ~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L-~GRiwdGKe~iLKAl~~~~~a~~~~v~~~~~si~~A~~~e~s 1491 (1702)
T KOG0915|consen 1413 KLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTL-NGRIWDGKEEILKALASAFEAGLADVKRNMSSIEHAVMEEVS 1491 (1702)
T ss_pred HHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHh-hccccccHHHHHHHHHHHHHHhHHHHHHhchHHHHHHHHHHH
Confidence 8888899888888888777665 88888888888887 578888889999999988888887766666666666666555
Q ss_pred CCChhHHHHHHHHHHHHHhhcC
Q 001791 934 DENQDVRQAAVYGLGVCAEFGG 955 (1012)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~ 955 (1012)
.....-+..+..+.|......+
T Consensus 1492 r~~~~y~~~ala~~~~~lda~~ 1513 (1702)
T KOG0915|consen 1492 RREAKYKIMALAGAGLALDATK 1513 (1702)
T ss_pred HHHhHHHHHHHhhhHHHHhhhh
Confidence 5555555555555555555544
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=5.1e-14 Score=149.02 Aligned_cols=490 Identities=15% Similarity=0.202 Sum_probs=330.5
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC-CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhh
Q 001791 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~-~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1012)
+....++..+-+.|++.....+|+......+..+.+....+ .--.++..+.+.+..+...+++....|+..+.-.....
T Consensus 51 ~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~ 130 (569)
T KOG1242|consen 51 QNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL 130 (569)
T ss_pred HHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc
Confidence 34556777888888887888899988888888887654321 22345666667677777888888888887766554433
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHH-HHHHHHHHH
Q 001791 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEAT-AQEALELLI 256 (1012)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~-~~~~~~~L~ 256 (1012)
....+.+.+.+.+... ...-|..+...+..++... ....+.++ .++..+....++.+... |..+..++.
T Consensus 131 ---~~~~~l~~l~~ll~~~-~~~~~~~aa~~~ag~v~g~----~i~~~~~~--~~l~~l~~ai~dk~~~~~re~~~~a~~ 200 (569)
T KOG1242|consen 131 ---SGEYVLELLLELLTST-KIAERAGAAYGLAGLVNGL----GIESLKEF--GFLDNLSKAIIDKKSALNREAALLAFE 200 (569)
T ss_pred ---CHHHHHHHHHHHhccc-cHHHHhhhhHHHHHHHcCc----HHhhhhhh--hHHHHHHHHhcccchhhcHHHHHHHHH
Confidence 2445556666666755 6677777777777766653 22222221 46666777776654443 334555555
Q ss_pred HHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCC
Q 001791 257 ELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1012)
Q Consensus 257 ~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1012)
......+..++||+..+++.++.... +....+|..+......+... .+ ..-++.++|.++..+...
T Consensus 201 ~~~~~Lg~~~EPyiv~~lp~il~~~~--d~~~~Vr~Aa~~a~kai~~~---~~------~~aVK~llpsll~~l~~~--- 266 (569)
T KOG1242|consen 201 AAQGNLGPPFEPYIVPILPSILTNFG--DKINKVREAAVEAAKAIMRC---LS------AYAVKLLLPSLLGSLLEA--- 266 (569)
T ss_pred HHHHhcCCCCCchHHhhHHHHHHHhh--ccchhhhHHHHHHHHHHHHh---cC------cchhhHhhhhhHHHHHHH---
Confidence 55555667788899888888887664 45788999988887777663 11 112344455544433211
Q ss_pred ccccCCCCCCccccCCcchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 001791 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1012)
Q Consensus 337 ~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1012)
.| ....++.+.++.++...+. +...+.++|.+.+.+.|..+++|.++..++..+.+.... +
T Consensus 267 -kW-------------rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~ 329 (569)
T KOG1242|consen 267 -KW-------------RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---P 329 (569)
T ss_pred -hh-------------hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---H
Confidence 23 2345677888877766542 245678889999999999999999999998888776554 4
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC-C
Q 001791 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC-T 493 (1012)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~-~ 493 (1012)
.+..++|.++.++.|+...+.... ..|+. ..+-..+..+.+.-++|.+-+.+.+ .+...+..++..+.+++.-. .
T Consensus 330 dI~~~ip~Lld~l~dp~~~~~e~~-~~L~~--ttFV~~V~~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 330 DIQKIIPTLLDALADPSCYTPECL-DSLGA--TTFVAEVDAPSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred HHHHHHHHHHHHhcCcccchHHHH-Hhhcc--eeeeeeecchhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcC
Confidence 477888999999999986665432 22221 1222222245678899999999988 77788899999999998877 5
Q ss_pred cccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHH
Q 001791 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1012)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1012)
+..+.||++.++|.+-..+.++.+++|..+..+++.+.+..|.. +++...|.+.+.+..+.. ..-|..+...++
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~---~f~d~~p~l~e~~~~~k~---~~~~~g~aq~l~ 479 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEV---SFDDLIPELSETLTSEKS---LVDRSGAAQDLS 479 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh---cccccccHHHHhhccchh---hhhhHHHhhhHH
Confidence 56789999999999999999999999999999999999998854 447778888877644222 112333334444
Q ss_pred HHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhc
Q 001791 574 LVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 644 (1012)
Q Consensus 574 ~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~ 644 (1012)
.+....|.+....++..++..... . ..+..+++..+..+..+-..++..+++|+..+++.+++.+.
T Consensus 480 evl~~~~v~~~~~~~~~~~a~~~~---~--~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~a 545 (569)
T KOG1242|consen 480 EVLAGLGVEKVEDILPEILANASS---V--LIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLA 545 (569)
T ss_pred HHHhcccchHHHHHHHHHHHHHhh---c--cchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhh
Confidence 444444444443344433332222 1 11122455556666667777889999999999999999885
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.5e-13 Score=145.61 Aligned_cols=439 Identities=18% Similarity=0.211 Sum_probs=331.1
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhccc
Q 001791 57 LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNIL 136 (1012)
Q Consensus 57 ~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~ 136 (1012)
++..+++.+ +.+.+.+|+....+|....... .......+...+.+.+.. ....-|..++..++.+++...
T Consensus 97 ~~~~~~~~~-~tps~~~q~~~~~~l~~~~~~~--------~~~~~~~~l~~l~~ll~~-~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 97 IIEILLEEL-DTPSKSVQRAVSTCLPPLVVLS--------KGLSGEYVLELLLELLTS-TKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred HHHHHHHhc-CCCcHHHHHHHHHHhhhHHHHh--------hccCHHHHHHHHHHHhcc-ccHHHHhhhhHHHHHHHcCcH
Confidence 444454443 3567889999999998876432 222344566677777774 777888888888888876432
Q ss_pred CCC-CcchHHHHHHHhhcCCC-HHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001791 137 PEN-GWPELLPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1012)
Q Consensus 137 ~~~-~~~~ll~~l~~~~~~~~-~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 214 (1012)
-.. .-..++..+...+.+.+ ...|++++.++...+...+..+.|++..++|.++..+.|. ...||.+|..+...+..
T Consensus 167 i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 167 IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAIMR 245 (569)
T ss_pred HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 111 11346777777777765 4556688889999999999888999999999999998887 89999999999999998
Q ss_pred hhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHH
Q 001791 215 CLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1012)
Q Consensus 215 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a 294 (1012)
.+ .......++|.++..+... .|.....+++.++.++...+..+...++++++.+.+.+. |..+++|.++
T Consensus 246 ~~----~~~aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~--DT~~evr~a~ 315 (569)
T KOG1242|consen 246 CL----SAYAVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW--DTKPEVRKAG 315 (569)
T ss_pred hc----CcchhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc--cCCHHHHHHH
Confidence 87 3444556666666655542 677888999999999999999999999999999998885 4578999999
Q ss_pred HHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHH-----Hc
Q 001791 295 IEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI-----AL 369 (1012)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~-----~~ 369 (1012)
.+++..+++.. + .+.+..++|.++..+.+.... ..++++.+.. .+
T Consensus 316 ~~~l~~~~svi--------d-N~dI~~~ip~Lld~l~dp~~~---------------------~~e~~~~L~~ttFV~~V 365 (569)
T KOG1242|consen 316 IETLLKFGSVI--------D-NPDIQKIIPTLLDALADPSCY---------------------TPECLDSLGATTFVAEV 365 (569)
T ss_pred HHHHHHHHHhh--------c-cHHHHHHHHHHHHHhcCcccc---------------------hHHHHHhhcceeeeeee
Confidence 99999998841 1 235788999999888765311 1223333322 22
Q ss_pred CCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhc--HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001791 370 GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC--AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1012)
Q Consensus 370 ~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~--~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1012)
. ..-+..+.|.+.+.+...+...+..++..++.++.-. +..+.++++.++|.+-..+.|+.|.+|..+.++++.+.+
T Consensus 366 ~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 366 D-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred c-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 2 2456778899988888777777788888888888766 557889999999999999999999999999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcC--ChhHHHHHHH
Q 001791 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALT 525 (1012)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~--~~~v~~~a~~ 525 (1012)
..+. ..++...|.+.+.+.+.....-+..+...+..++...+. .+...+++.+....... .+.++...+.
T Consensus 445 ~~g~----~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v----~~~~~~~~~~~a~~~~~~~~~~~~dg~~~ 516 (569)
T KOG1242|consen 445 RLGE----VSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGV----EKVEDILPEILANASSVLIDERIRDGVIW 516 (569)
T ss_pred HHHh----hcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccc----hHHHHHHHHHHHHHhhccchhhhccCeee
Confidence 8875 344889999999887744455677888888888887763 45566666666554433 3557888888
Q ss_pred HHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001791 526 ALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1012)
Q Consensus 526 ~l~~l~~~~~~~~~~~~~~il~~l~~~l~~ 555 (1012)
.+..+-...+..+.+|+.++++.+.+.+..
T Consensus 517 ~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 517 LFYLLPYIFGFQFQPYIHEILDEFLKGLAD 546 (569)
T ss_pred hhhccchhhhHHhHHHHHHHHHHHHHHhhh
Confidence 888888888888999999999998888763
No 31
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=4.8e-09 Score=119.30 Aligned_cols=744 Identities=12% Similarity=0.125 Sum_probs=372.2
Q ss_pred HHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcc-
Q 001791 58 TLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNI- 135 (1012)
Q Consensus 58 ~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~- 135 (1012)
...|...++. +.+..+++.+.-+|..++...+-.-|.. ...++.+...+. ...+ ..+.+|..+.+.+..+...-
T Consensus 95 ~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~--~~t~~~~~~il~-~~~h-~~pkvRk~a~~~i~~VL~~p~ 170 (1176)
T KOG1248|consen 95 LNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSY--SSTKTELFGILA-FAAH-KKPKVRKAAQRGIAAVLKGPP 170 (1176)
T ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhcc--ccHHHHHHHHHH-HHhc-CchHHHHHHHHHHHHHHcCCC
Confidence 4555555543 7789999999999999999877677983 334555543333 3333 67889998888888876510
Q ss_pred -cCCCCcchH---HHHHHHhh------------------------------------------cCCCHHHHHHHHHHHHH
Q 001791 136 -LPENGWPEL---LPFMFQCV------------------------------------------SSDSVKLQESAFLIFAQ 169 (1012)
Q Consensus 136 -~~~~~~~~l---l~~l~~~~------------------------------------------~~~~~~~r~~al~~l~~ 169 (1012)
.|...-|.. ..++++.+ ...+..++..++.++..
T Consensus 171 ~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~ 250 (1176)
T KOG1248|consen 171 FAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHS 250 (1176)
T ss_pred CCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 010111111 11222222 22222333344444444
Q ss_pred hhhhHhhhccc-cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHH
Q 001791 170 LSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATA 248 (1012)
Q Consensus 170 l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~ 248 (1012)
+....+..+.. ....++..+...--+..+...-.+-++++......+.. .+.+....-+|.++..++.++.+..++..
T Consensus 251 lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~-~q~~~~~~~~~~~~~~~~t~~~s~~~e~~ 329 (1176)
T KOG1248|consen 251 LFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILAT-LQEEKALQALPRLFSLFFTILESLIEELV 329 (1176)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHH-hCHHHHHHhhhhhhhHHHHHHhcccHHHH
Confidence 43333222111 11222222222111112333333444444443333211 12233334466677777777777788888
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHH-HHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHH
Q 001791 249 QEALELLIELAGTEPRFLRRQLVDVVGS-MLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILM 327 (1012)
Q Consensus 249 ~~~~~~L~~l~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 327 (1012)
+.+-+++..+...... +.+.+... +-..++.+ -..+-..++.++..+.+.-+ ....+++.+.+..+-
T Consensus 330 q~a~q~l~~il~~sv~----~~~~~c~~~~~~~l~~k--f~~~~~~ilqi~s~~fek~G------~~s~~~l~~~L~~l~ 397 (1176)
T KOG1248|consen 330 QAASQSLKEILKESVT----VIDALCSKQLHSLLDYK--FHAVWRFILQILSALFEKCG------ELSGPELTKTLEGLC 397 (1176)
T ss_pred HHHHHHHHHHhcccCc----ccHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHHHhh------hhcCHHHHHHHHHHH
Confidence 8888888888876655 22223332 11111111 12233445566666655311 112233333333332
Q ss_pred HhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 001791 328 SMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG 407 (1012)
Q Consensus 328 ~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 407 (1012)
.+ . .++ +......-.++++.-...+|++.++. ++|.=. ...+. +..-.+.|--+=.+
T Consensus 398 ~l-r---~~~-------------d~~~~~~ld~~IGSAV~AmGPe~vL~-~lpLnl-~~~s~----~~~RsWLLPvLR~~ 454 (1176)
T KOG1248|consen 398 DL-R---ASP-------------DFFHKLQLDQCIGSAVRAMGPERVLT-ILPLNL-HAESL----SFTRSWLLPVLRDY 454 (1176)
T ss_pred Hh-h---cCC-------------CCccHHHHHHHHHHHHHhhCHHHHHH-Hcchhc-ccccc----ccchhHhHHHHHHh
Confidence 21 1 111 11111233456666666666443222 222111 00010 00011111111111
Q ss_pred cHH-HHHHhHHHHHHHHHh------hCCCCC--h-hHHHHHHHHHH---HhhhhhchhHHhhhhhhhHHHHHhhcCCCCC
Q 001791 408 CAK-VMVKNLEQVLSMVLN------SFRDPH--P-RVRWAAINAIG---QLSTDLGPDLQNQFHPQVLPALAGAMDDFQN 474 (1012)
Q Consensus 408 ~~~-~~~~~l~~i~~~l~~------~l~d~~--~-~vr~~a~~~l~---~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 474 (1012)
... .+.-+.+.++|.... .+.... . .++.-....++ .+|+. |.+. ..-+..+.+.+...+.. .
T Consensus 455 i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~-P~Dl-~~sF~~la~~l~~al~~--~ 530 (1176)
T KOG1248|consen 455 IIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNY-PVDL-AESFTDLAPILGAALLK--R 530 (1176)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCC-CccH-HHHHHHHHHHHHHHHhc--c
Confidence 110 011111222222222 122221 1 22222222222 23321 2233 34477788888888876 5
Q ss_pred hHHHHHHHHHHHHHhhcCC--------cccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH-hhhHhhHhhh
Q 001791 475 PRVQAHAASAVLNFSENCT--------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ-EHFQKYYDAV 545 (1012)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~--------~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~i 545 (1012)
+..|...|.+|..+++... .+.+..|..+.++.+++.-......-+ .++.+......... ..|..-..++
T Consensus 531 ~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv 609 (1176)
T KOG1248|consen 531 PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDV 609 (1176)
T ss_pred hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHH
Confidence 6899999999999998752 134567778888888887665543333 33333333222222 1222111223
Q ss_pred hHHHHHHHhhccccc----cchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHH
Q 001791 546 MPFLKAILVNATDKS----NRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1012)
Q Consensus 546 l~~l~~~l~~~~~~~----~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 621 (1012)
...+.+.+....... ........++.+..++.....+....+. .+++...+ ..+..+.......+..+.
T Consensus 610 ~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~------~~~~~vQkK~yrlL~~l~ 682 (1176)
T KOG1248|consen 610 VGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFEN------SSSTKVQKKAYRLLEELS 682 (1176)
T ss_pred HHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhc------cccHHHHHHHHHHHHHHh
Confidence 333333222211111 1112222334343343333322222222 22222211 112334555556666665
Q ss_pred HHhcCCcc----cchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHH
Q 001791 622 KCLGQDFL----PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCC 697 (1012)
Q Consensus 622 ~~~~~~~~----~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~ 697 (1012)
.. .... ..+..+...+.+.++.. ....+..++++|..
T Consensus 683 ~~--~s~~~~~~q~i~~I~n~L~ds~qs~-------------------------------------~~~~~~~rl~~L~~ 723 (1176)
T KOG1248|consen 683 SS--PSGEGLVEQRIDDIFNSLLDSFQSS-------------------------------------SSPAQASRLKCLKR 723 (1176)
T ss_pred cC--CchhhHHHHHHHHHHHHHHHHHhcc-------------------------------------chHHHHHHHHHHHH
Confidence 44 2222 33333444444443221 11235678999999
Q ss_pred HHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 001791 698 YADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALH 777 (1012)
Q Consensus 698 i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 777 (1012)
+.+.++..+..++...++.++=..++ .+..-|+.|..+|-.+.... ..... ++.+ ....++.+++.+...+.
T Consensus 724 L~~~~~~e~~~~i~k~I~EvIL~~Ke-~n~~aR~~Af~lL~~i~~i~-~~~d~----g~e~--~~~~lnefl~~Isagl~ 795 (1176)
T KOG1248|consen 724 LLKLLSAEHCDLIPKLIPEVILSLKE-VNVKARRNAFALLVFIGAIQ-SSLDD----GNEP--ASAILNEFLSIISAGLV 795 (1176)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc-ccHHHHhhHHHHHHHHHHHH-hhhcc----cccc--hHHHHHHHHHHHHhhhc
Confidence 99999866666666666555444454 48889999999998887421 11111 1121 23445566666655544
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHH
Q 001791 778 KEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVF 857 (1012)
Q Consensus 778 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~ 857 (1012)
.+. ..+...-+-++..++...+..++.+.+..+++.+.-.|... .+.++
T Consensus 796 gd~-~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~------------------------------sreI~ 844 (1176)
T KOG1248|consen 796 GDS-TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN------------------------------SREIA 844 (1176)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC------------------------------CHHHH
Confidence 442 23333337788888888877777888888877777666542 23466
Q ss_pred HHHHHHHHHHHHHcccc-chhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-hHhhhHhHHHHHHhhc
Q 001791 858 DQVGEILGTLIKTFKAA-FLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEAC 932 (1012)
Q Consensus 858 ~~~~~~l~~l~~~~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~~l~~l 932 (1012)
..|.+++..++..+|.. +.|+++.++|.+...+ ++..-.+|..+-.++..+++.+|.. +.+|+|...--++..+
T Consensus 845 kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls-~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nI 920 (1176)
T KOG1248|consen 845 KAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS-HDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNI 920 (1176)
T ss_pred HHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHH
Confidence 78999999999999975 5699999999999976 4556667778888888899988875 4456664444444433
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.8e-12 Score=133.88 Aligned_cols=393 Identities=15% Similarity=0.170 Sum_probs=281.6
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch---HHHHHH-HhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHH
Q 001791 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPE---LLPFMF-QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1012)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~---ll~~l~-~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1012)
+..+|.+ ....=|++++.-+..+++.....+.... ++..+. ..+.+++.+.|++++..+..+.-..+.+..++..
T Consensus 5 i~r~ltd-KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 5 IARGLTD-KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 4556664 5667788899999999886666554443 333222 2345667778889999998888777766666899
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch
Q 001791 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1012)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~ 263 (1012)
.+++.++.++.|+ +.+||..|.+.+++++.... ..+..+++.+...++....+.+..++. +.+.+..++..-.
T Consensus 84 ~iv~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k-----~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIV 156 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQ-DSQVRYYACESLYNIAKVAK-----GEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIV 156 (675)
T ss_pred HhhHHHHHhccCc-cceeeeHhHHHHHHHHHHhc-----cCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhc
Confidence 9999999999998 99999999999999998753 233445667788888887776666654 4455555443111
Q ss_pred H--HHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccC
Q 001791 264 R--FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1012)
Q Consensus 264 ~--~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1012)
. .-.-+++.+++.+-..+. ..++..|...++++..+-. .|.. .+-.|++.+++-+++++.+..+
T Consensus 157 te~~~tFsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds----~P~~--~m~~yl~~~ldGLf~~LsD~s~------ 222 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDS----VPDL--EMISYLPSLLDGLFNMLSDSSD------ 222 (675)
T ss_pred cccccccCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhc----CCcH--HHHhcchHHHHHHHHHhcCCcH------
Confidence 0 002245666766655443 2366778877766666554 3421 3446888999999998875422
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHcCCCc---chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH
Q 001791 342 AETEDEDAGESSNYSVGQECLDRLAIALGGNT---IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ 418 (1012)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ 418 (1012)
+.+..+..+++.+-..+..++ -.+.+++.+...+.+++...+..|+.++..++.-.+.....++..
T Consensus 223 -----------eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~ 291 (675)
T KOG0212|consen 223 -----------EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSG 291 (675)
T ss_pred -----------HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhh
Confidence 245555555555444332221 234566667778889999999999999999999888888889999
Q ss_pred HHHHHHhhCCCCCh-hHHHHHHHHHHHhhhhhchhHHh--hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 419 VLSMVLNSFRDPHP-RVRWAAINAIGQLSTDLGPDLQN--QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 419 i~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
++..+++++.+..+ .++..+...=+.+..-+...... -.+..++..+.+.+.+ +....|.++..++..+....+.+
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~q 370 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPGQ 370 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcch
Confidence 99999999988766 47777666554454444332211 1345899999999998 88889999999999999999865
Q ss_pred cccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 496 ~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
+..+.++|.+.|++.+.+++..+-..++..++.++....
T Consensus 371 -l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 371 -LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred -hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 568889999999999999999999999999988886644
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.5e-12 Score=132.92 Aligned_cols=412 Identities=16% Similarity=0.172 Sum_probs=289.9
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHH-HHHHHHhcCChHHHHHHHHHHHHHHccchHHHH
Q 001791 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR-TLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1012)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~-~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 267 (1012)
+..++.|. -.+-|++|..-+..++..+-...+...+. .+++ .......+++...|.+++-.+...+-..+..-.
T Consensus 5 i~r~ltdK-lYekRKaaalelEk~Vk~l~~~~~~~~i~----k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 5 IARGLTDK-LYEKRKAAALELEKLVKDLVNNNDYDQIR----KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHccCcHHHHH----HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH
Confidence 44566665 67788888888888887654333333333 3444 223334455555666776666655433333334
Q ss_pred HhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCc
Q 001791 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1012)
Q Consensus 268 ~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~e 347 (1012)
+|+..+++..+..+. |.+..+|..|++.++.+++..+ .....+.+.++..+.....+.+.
T Consensus 80 ~Y~~~iv~Pv~~cf~--D~d~~vRyyACEsLYNiaKv~k------~~v~~~Fn~iFdvL~klsaDsd~------------ 139 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFS--DQDSQVRYYACESLYNIAKVAK------GEVLVYFNEIFDVLCKLSADSDQ------------ 139 (675)
T ss_pred HHHHHhhHHHHHhcc--CccceeeeHhHHHHHHHHHHhc------cCcccchHHHHHHHHHHhcCCcc------------
Confidence 477788887777774 5578899999999999998521 13445777888877776554322
Q ss_pred cccCCcchhhHHHHHHHHHHHcCCC----cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001791 348 DAGESSNYSVGQECLDRLAIALGGN----TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1012)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1012)
..+-+.+.++++.+....+ --++.++|.+.+.+...++..|..-+.++..+-...+-.+..|++.+++.+
T Consensus 140 ------~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGL 213 (675)
T KOG0212|consen 140 ------NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGL 213 (675)
T ss_pred ------ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHH
Confidence 1234566777776544222 236789999999999999999999999999988777777889999999999
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHH
Q 001791 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1012)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~ 503 (1012)
+..|+|+++.||..+-.+++.+...+......-..+..++.+...+.+ +++.++..|..++..++...+++ +.+|+..
T Consensus 214 f~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i~g~~-~l~~~s~ 291 (675)
T KOG0212|consen 214 FNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKIPGRD-LLLYLSG 291 (675)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC-CcHHHHHHHHHHHHHHhcCCCcc-hhhhhhh
Confidence 999999999999999999999988776544222567899999999999 99999999999999999988855 6799999
Q ss_pred HHHHHHHHhhcCCh-hHHHHHHHHHHHHHHHhHhhhHh---hHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhh
Q 001791 504 IVSKLLVLLQNGKQ-MVQEGALTALASVADSSQEHFQK---YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV 579 (1012)
Q Consensus 504 il~~l~~~l~~~~~-~v~~~a~~~l~~l~~~~~~~~~~---~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~ 579 (1012)
++..++.++.+... .+++.+...-+.+...++..... -+..++..+...+.+ +...-|..+++.+..+-...
T Consensus 292 il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~----~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 292 ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD----DREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHhhC
Confidence 99999999988776 57777766666666655543221 334777777777754 34456777888888888777
Q ss_pred ChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhc
Q 001791 580 GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQ 644 (1012)
Q Consensus 580 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~ 644 (1012)
+ .....+...+.+.++.-.. +.++.+....+..++.+| ...-.+.+-+.+..|++...
T Consensus 368 p-~ql~~h~~~if~tLL~tLs---d~sd~vvl~~L~lla~i~---~s~~~~~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 368 P-GQLLVHNDSIFLTLLKTLS---DRSDEVVLLALSLLASIC---SSSNSPNLRKFLLSLLEMFK 425 (675)
T ss_pred c-chhhhhccHHHHHHHHhhc---CchhHHHHHHHHHHHHHh---cCcccccHHHHHHHHHHHHh
Confidence 7 4567777888888887333 133455455555555554 44444455555555666554
No 34
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=6.8e-12 Score=131.01 Aligned_cols=437 Identities=17% Similarity=0.217 Sum_probs=276.8
Q ss_pred HHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh--cch
Q 001791 40 SEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL--ESA 117 (1012)
Q Consensus 40 ~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~--~~~ 117 (1012)
..|..+|+.|++ .++.| ...-+++....+-....+|+..++++++.. +..+++.....+|+.++..++. +..
T Consensus 2 ~~A~~~L~~FQ~-S~~aW-~i~~eiL~~~~~~~~~~FaaqTlr~Ki~~~----F~~Lp~~~~~slrdsl~thl~~l~~~~ 75 (559)
T KOG2081|consen 2 EKANNWLGNFQK-SNDAW-QICEEILSQKCDVEALLFAAQTLRNKIQYD----FSELPPLTHASLRDSLITHLKELHDHP 75 (559)
T ss_pred chHhHHHHHhCC-ChHHH-HHHHHHHcccchHHHHHHHHHHHHHHHHhh----HHhcCcchhHHHHHHHHHHHHHHHhCC
Confidence 568899999999 45555 788888877788899999999999999987 8889888888888877665542 233
Q ss_pred HhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHh---------------hhccccH
Q 001791 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG---------------DTLTPHL 182 (1012)
Q Consensus 118 ~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~---------------~~~~~~~ 182 (1012)
+.+|.+++.+++.++-+. + .|..-++.+++...+..+. ...-+.+|..+.++.. +++.+..
T Consensus 76 ~~i~tQL~vavA~Lal~~-~--~W~n~I~e~v~~~~~~~~~-~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~ 151 (559)
T KOG2081|consen 76 DVIRTQLAVAVAALALHM-P--EWVNPIFELVRALSNKHPA-VPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQV 151 (559)
T ss_pred chHHHHHHHHHHHHHHHh-H--hhcchHHHHHHHhhcCCcc-HHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhH
Confidence 389999999999998764 3 7988777777777766655 3355666666666532 1233455
Q ss_pred HHHHHHHHHhhcCC--CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh-------------------
Q 001791 183 KHLHAVFLNCLTNS--NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN------------------- 241 (1012)
Q Consensus 183 ~~l~~~l~~~l~~~--~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~------------------- 241 (1012)
..++..+..++++. ++..+-..+++|++++.....- ..+.+....| ++..++..++
T Consensus 152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~--~~d~v~a~~p-Li~l~F~sl~~~~lhe~At~cic~ll~~~ 228 (559)
T KOG2081|consen 152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVF--PPDQVLASFP-LITLAFRSLSDDELHEEATECICALLYCS 228 (559)
T ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccC--CHHHHHhhhH-HHHHHHHHcccchhhHHHHHHHHHHHHHh
Confidence 66667777777665 2356777889999988873210 1222222212 2223333332
Q ss_pred -----------------------------cCChHHHHHHHHHHHHHHccchHHHHH---hHHHHHHHHHHhhccCCcchH
Q 001791 242 -----------------------------NGNEATAQEALELLIELAGTEPRFLRR---QLVDVVGSMLQIAEAESLEEG 289 (1012)
Q Consensus 242 -----------------------------~~~~~~~~~~~~~L~~l~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~~ 289 (1012)
..+.+.+....+++..+.+.+...+.. ..-.+++.++-.. .+.+.+
T Consensus 229 ~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~--~h~~~e 306 (559)
T KOG2081|consen 229 LDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVA--GHNDTE 306 (559)
T ss_pred hhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhc--cCCchh
Confidence 112223333333333333322211111 0112222222222 234557
Q ss_pred HHHHHHHHHHHHHHhh--hccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHH
Q 001791 290 TRHLAIEFVITLAEAR--ERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1012)
Q Consensus 290 vr~~a~~~l~~l~~~~--~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (1012)
+....+.+|..+.+.- .+.......+.+|..+++..+........+..... +++++...-+....+.+...+.
T Consensus 307 vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~-----Ee~~~f~~fR~~v~dvl~Dv~~ 381 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLP-----EEESEFFEFRLKVGDVLKDVAF 381 (559)
T ss_pred hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCc-----cchhHHHHHHHHHHHHHHHHHH
Confidence 7888899999987741 12233334567899999999998887765211100 1111122234456777888888
Q ss_pred HcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001791 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1012)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1012)
.+|++..+..+...+.+ ..+.|+.-+|+++.+..++.+.+..-.+.++.++..+.+.= ....+|++++..+|.+++
T Consensus 382 iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nlp--~Q~~~~~ts~ll~g~~~e 457 (559)
T KOG2081|consen 382 IIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNLP--EQAPLRYTSILLLGEYSE 457 (559)
T ss_pred HhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCCc--cchhHHHHHHHHHHHHHH
Confidence 88877666666555554 56789999999999999998876544455566666555442 233399999999999999
Q ss_pred hhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHH
Q 001791 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVS 506 (1012)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~ 506 (1012)
++..+. ..+..++..+...+.. .+...++..++..++..+.. ...+.++.+..
T Consensus 458 w~~~~p--~~le~v~~~~~~~~~~---~~~as~~a~~~~~i~~~c~~-~~~~l~~~~~~ 510 (559)
T KOG2081|consen 458 WVEQHP--ELLEPVLRYIRQGLQL---KRLASAAALAFHRICSACRV-QMTCLIPSLLE 510 (559)
T ss_pred HHHhCc--HHHHHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHH-HhhhhhHHHHH
Confidence 986653 5667777777777777 23777888888888877752 23344444333
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.60 E-value=9.8e-12 Score=144.15 Aligned_cols=482 Identities=20% Similarity=0.267 Sum_probs=326.6
Q ss_pred hCCChh-HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCc
Q 001791 17 LGPDSA-PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFL 92 (1012)
Q Consensus 17 ~~~~~~-~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~---~~~~~~vr~~a~~~L~~~i~~~~~~~ 92 (1012)
+|.|.. .+.+++..+.++|...|+-+.-.+..+...+|+.. ...+.-+. +++++.+|-+|...+.++.
T Consensus 36 ~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~-~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~------- 107 (526)
T PF01602_consen 36 LGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELL-ILIINSLQKDLNSPNPYIRGLALRTLSNIR------- 107 (526)
T ss_dssp TT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------
T ss_pred cCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------
Confidence 344433 55666777788899999999999999888677643 22333332 3788999999999999964
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch-HHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001791 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE-LLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1012)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~-ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1012)
+++..+.+...+.+.+.+ +++.||+.++.++..+.+.. | +..+. +++.+.+++.++++.++..|+.++..+
T Consensus 108 ----~~~~~~~l~~~v~~ll~~-~~~~VRk~A~~~l~~i~~~~-p-~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i- 179 (526)
T PF01602_consen 108 ----TPEMAEPLIPDVIKLLSD-PSPYVRKKAALALLKIYRKD-P-DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI- 179 (526)
T ss_dssp ----SHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHC-H-CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-
T ss_pred ----ccchhhHHHHHHHHHhcC-CchHHHHHHHHHHHHHhccC-H-HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-
Confidence 467778888888899986 88999999999999999863 3 34445 799999999999999999999999988
Q ss_pred hhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHH
Q 001791 172 QYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEA 251 (1012)
Q Consensus 172 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~ 251 (1012)
+..++......+.++..+.+.+... ++-.+..+++++..+.... ...... ..+++.+...+++.++.++..+
T Consensus 180 ~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~-----~~~~~~--~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 180 KCNDDSYKSLIPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPME-----PEDADK--NRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp HCTHHHHTTHHHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSS-----HHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhHHHHHHHhhhccccc-chHHHHHHHHHHHhcccCC-----hhhhhH--HHHHHHHHHHhhccccHHHHHH
Confidence 3223322245677777777777776 8888888888888665432 111100 2355555555556678888888
Q ss_pred HHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhc
Q 001791 252 LELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1012)
Q Consensus 252 ~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1012)
+.++..+..... ....+++.+...+. +.+..+|..+++.+..++.. .+ +.+......++ .+.
T Consensus 252 ~~~i~~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~---~~-------~~v~~~~~~~~-~l~ 313 (526)
T PF01602_consen 252 IRLIIKLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQS---NP-------PAVFNQSLILF-FLL 313 (526)
T ss_dssp HHHHHHHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCH---CH-------HHHGTHHHHHH-HHH
T ss_pred HHHHHHhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHHHHhhcc---cc-------hhhhhhhhhhh-eec
Confidence 888887655333 44556666666664 45778999999999998874 21 11211111111 111
Q ss_pred cCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhcHH
Q 001791 332 DIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-APEWQKHHAALIALAQIAEGCAK 410 (1012)
Q Consensus 332 ~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~ 410 (1012)
.. + +.+.+..+.+++..++. +.-...+++.+...+. ..+...|..++..++.++...+.
T Consensus 314 ~~-~---------------d~~Ir~~~l~lL~~l~~----~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 314 YD-D---------------DPSIRKKALDLLYKLAN----ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp CS-S---------------SHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred CC-C---------------ChhHHHHHHHHHhhccc----ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 11 1 22355566666666664 3345557777777774 45788999999999999887643
Q ss_pred HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 411 VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
..+..++.+++.+...+..+...+...+..+....+. ....++..+++.+.+...+.++..++|.+++...
T Consensus 374 ----~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~-----~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 374 ----DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE-----LREKILKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp ----SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT-----THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred ----hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh-----hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 4455666777777767777777777777777655332 2244566677766654678899999999999987
Q ss_pred cCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHH
Q 001791 491 NCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSME 570 (1012)
Q Consensus 491 ~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~ 570 (1012)
.... .. ....++..+...+...+..+|..++.++..+....+.. ...+.+.+.+.+.... ++.+..+|.||.+
T Consensus 445 ~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~--~~~~~i~~~~~~~~~~--~s~~~evr~Ra~~ 517 (526)
T PF01602_consen 445 LIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN--EVQNEILQFLLSLATE--DSSDPEVRDRARE 517 (526)
T ss_dssp HHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST--THHHHHHHHHHCHHHH--S-SSHHHHHHHHH
T ss_pred cccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch--hhHHHHHHHHHHHhcc--CCCCHHHHHHHHH
Confidence 7663 22 66778888888887778889999999999988766531 0122455555555431 2346779999999
Q ss_pred HHHHHH
Q 001791 571 CISLVG 576 (1012)
Q Consensus 571 ~l~~l~ 576 (1012)
.+..+-
T Consensus 518 y~~ll~ 523 (526)
T PF01602_consen 518 YLRLLN 523 (526)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887664
No 36
>PTZ00429 beta-adaptin; Provisional
Probab=99.60 E-value=5e-10 Score=128.10 Aligned_cols=473 Identities=12% Similarity=0.067 Sum_probs=285.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhh-hc-CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHH
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCK-QQ-DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHT 100 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~-~~-~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~ 100 (1012)
++.++-..+.+.|...|+.|-+.+-... .. +-..+....+..+ ++++..+|++.-+++.+..+.+ ++.
T Consensus 33 e~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~-~S~d~elKKLvYLYL~~ya~~~---------pel 102 (746)
T PTZ00429 33 EGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLA-PSTDLELKKLVYLYVLSTARLQ---------PEK 102 (746)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccC---------hHH
Confidence 5555556666777777777777654332 21 2222223333333 4678999999999999976543 444
Q ss_pred HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccc
Q 001791 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1012)
Q Consensus 101 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1012)
.--..+.+.+-+.+ +++.+|-.+.+.++.|-. + ...+.+++.+.+++.+.++-+|+.|..++..+....++.+.
T Consensus 103 alLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~---~-~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~- 176 (746)
T PTZ00429 103 ALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRV---S-SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY- 176 (746)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCc---H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc-
Confidence 44455667777775 899999988877776532 3 35677888889999999999999999999999876554321
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
-..+++.+.+.|.|. ++.|...|+.+|..+....+ ..+.... ..+..+...+.+-++..+...+++|....-
T Consensus 177 -~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~-----~~l~l~~-~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P 248 (746)
T PTZ00429 177 -QQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDYGS-----EKIESSN-EWVNRLVYHLPECNEWGQLYILELLAAQRP 248 (746)
T ss_pred -ccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHhCc-----hhhHHHH-HHHHHHHHHhhcCChHHHHHHHHHHHhcCC
Confidence 123455566667887 99999999999999876432 1121112 223334444444455566666666654221
Q ss_pred cchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCcccc
Q 001791 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1012)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1012)
... .....+++.+...+. +.++.|...|+.++..+.... .+. ........+.+.++.....
T Consensus 249 ~~~----~e~~~il~~l~~~Lq--~~N~AVVl~Aik~il~l~~~~--~~~---~~~~~~~rl~~pLv~L~ss-------- 309 (746)
T PTZ00429 249 SDK----ESAETLLTRVLPRMS--HQNPAVVMGAIKVVANLASRC--SQE---LIERCTVRVNTALLTLSRR-------- 309 (746)
T ss_pred CCc----HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCcC--CHH---HHHHHHHHHHHHHHHhhCC--------
Confidence 111 123355555555553 346778888887777765420 011 1122333344444443221
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001791 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1012)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1012)
.......+...+..+....+ .++..-+..+.-..+|+. .+|...+..+..++.. .....++
T Consensus 310 ----------~~eiqyvaLr~I~~i~~~~P--~lf~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane------~Nv~~IL 370 (746)
T PTZ00429 310 ----------DAETQYIVCKNIHALLVIFP--NLLRTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTP------SVAPEIL 370 (746)
T ss_pred ----------CccHHHHHHHHHHHHHHHCH--HHHHHHHHhhhcccCCcH-HHHHHHHHHHHHHcCc------ccHHHHH
Confidence 11244456666666665443 222222333333334554 4788888888888754 4456677
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCc
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1012)
.-+.....+.+..++..+..++|.++..++. ....++..|++.+.+ ... +...++.++..+++..+.. +
T Consensus 371 ~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~-----~a~~cV~~Ll~ll~~-~~~-~v~e~i~vik~IlrkyP~~----~ 439 (746)
T PTZ00429 371 KELAEYASGVDMVFVVEVVRAIASLAIKVDS-----VAPDCANLLLQIVDR-RPE-LLPQVVTAAKDIVRKYPEL----L 439 (746)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhcC-Cch-hHHHHHHHHHHHHHHCccH----H
Confidence 7777888888999999999999999976643 456777777777766 333 4456788888888876532 1
Q ss_pred HHHHHHHHHHHh---hcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Q 001791 501 LDGIVSKLLVLL---QNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1012)
Q Consensus 501 ~~~il~~l~~~l---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1012)
++..+...+ .-.++..|...++.+|..+....+ .+.++..+.+.+ ..+...+|...+.+...+..
T Consensus 440 ---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-----a~~~L~~~i~~f----~~E~~~VqlqlLta~vKlfl 507 (746)
T PTZ00429 440 ---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-----GKDIIQRFIDTI----MEHEQRVQLAILSAAVKMFL 507 (746)
T ss_pred ---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-----HHHHHHHHHhhh----ccCCHHHHHHHHHHHHHHHh
Confidence 344444432 123567788888888887765432 223332222222 22344567666666655543
Q ss_pred hhC
Q 001791 578 AVG 580 (1012)
Q Consensus 578 ~~~ 580 (1012)
..+
T Consensus 508 ~~p 510 (746)
T PTZ00429 508 RDP 510 (746)
T ss_pred cCc
Confidence 333
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.60 E-value=2.7e-11 Score=140.49 Aligned_cols=510 Identities=17% Similarity=0.231 Sum_probs=333.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhhhc--CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001791 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1012)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1012)
+++...+.... .+...|..|-+.|-.+... +.++.....+..+ ++++...|+++-+++..+...+ ++
T Consensus 7 ~el~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~~---------~~ 75 (526)
T PF01602_consen 7 QELAKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLI-SSKDLELKRLGYLYLSLYLHED---------PE 75 (526)
T ss_dssp HHHHHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTC-SSSSHHHHHHHHHHHHHHTTTS---------HH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhcc---------hh
Confidence 35555555554 4666777777776544321 2232223333333 3889999999999999986553 55
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhcc
Q 001791 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1012)
..--+.+.+...|.+ +++.+|..+..+++.+... ...+.+++.+.+++.++++.+|+.|+.++..+....++.+.
T Consensus 76 ~~~l~~n~l~kdl~~-~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 76 LLILIINSLQKDLNS-PNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHHHHHCS-SSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHHHHHhhcC-CCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHH
Confidence 555667777778876 8899999999999988754 35688999999999999999999999999999998666532
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 001791 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1012)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~ 259 (1012)
.. +++.+.+.+.|+ ++.|+.+|+.++..+ .. ....+..+++.+.+.+.+.+...++..+..++++|..++
T Consensus 151 ~~---~~~~l~~lL~d~-~~~V~~~a~~~l~~i-~~-----~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 DE---LIPKLKQLLSDK-DPSVVSAALSLLSEI-KC-----NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp GG---HHHHHHHHTTHS-SHHHHHHHHHHHHHH-HC-----THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred HH---HHHHHhhhccCC-cchhHHHHHHHHHHH-cc-----CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 21 678888888887 899999999999988 22 223333667788888888778889999999999999888
Q ss_pred ccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccc
Q 001791 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1012)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1012)
...+..-.. ..+++.+...+. +.+..+...+..++..+... .+....+++.+...+...
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~--s~~~~V~~e~~~~i~~l~~~-----------~~~~~~~~~~L~~lL~s~------ 279 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQ--SSSPSVVYEAIRLIIKLSPS-----------PELLQKAINPLIKLLSSS------ 279 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHSSS-----------HHHHHHHHHHHHHHHTSS------
T ss_pred cCChhhhhH--HHHHHHHHHHhh--ccccHHHHHHHHHHHHhhcc-----------hHHHHhhHHHHHHHhhcc------
Confidence 766555421 233333333332 33566777777666655431 225677788887777632
Q ss_pred cCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001791 340 HSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1012)
Q Consensus 340 ~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1012)
+...+..+...+..++...+ ..+. .....+.-...+++..+|..++..+..++.. .....+
T Consensus 280 -----------~~nvr~~~L~~L~~l~~~~~-~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~------~n~~~I 340 (526)
T PF01602_consen 280 -----------DPNVRYIALDSLSQLAQSNP-PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE------SNVKEI 340 (526)
T ss_dssp -----------SHHHHHHHHHHHHHHCCHCH-HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H------HHHHHH
T ss_pred -----------cchhehhHHHHHHHhhcccc-hhhh-hhhhhhheecCCCChhHHHHHHHHHhhcccc------cchhhH
Confidence 11244556666666654431 1122 1112222233478899999999999998864 445667
Q ss_pred HHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCccccc
Q 001791 420 LSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1012)
Q Consensus 420 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1012)
++.+...+.+. ++.+|..+...++.++...++. ...+++.+++.+.. ....+...+...+..++...+ +
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~-----~~~~v~~l~~ll~~-~~~~~~~~~~~~i~~ll~~~~-~--- 410 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD-----AEWYVDTLLKLLEI-SGDYVSNEIINVIRDLLSNNP-E--- 410 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-----HHHHHHHHHHHHHC-TGGGCHCHHHHHHHHHHHHST-T---
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCch-----HHHHHHHHHHhhhh-ccccccchHHHHHHHHhhcCh-h---
Confidence 77777777444 7779999999999999877543 34566666666666 566778888888999887654 2
Q ss_pred CcHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Q 001791 499 PYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1012)
Q Consensus 499 ~~~~~il~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1012)
....++..+...+.+ ..+.++..+++++|..+....+ . .....++..+.+.+.. +...+|..++.++..+..
T Consensus 411 -~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~-~~~~~~~~~l~~~~~~----~~~~vk~~ilt~~~Kl~~ 483 (526)
T PF01602_consen 411 -LREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-T-ESAPDILRSLIENFIE----ESPEVKLQILTALAKLFK 483 (526)
T ss_dssp -THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-T-THHHHHHHHHHHHHTT----SHHHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-c-ccHHHHHHHHHHhhcc----ccHHHHHHHHHHHHHHHh
Confidence 234567777777765 4567888888888887766554 0 1334444545544432 345678888888888776
Q ss_pred hhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH
Q 001791 578 AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWA 618 (1012)
Q Consensus 578 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~ 618 (1012)
..+..... +.+++.+....... +.+-.+++.+...+.
T Consensus 484 ~~~~~~~~---~~i~~~~~~~~~~~-s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 484 RNPENEVQ---NEILQFLLSLATED-SSDPEVRDRAREYLR 520 (526)
T ss_dssp HSCSTTHH---HHHHHHHHCHHHHS--SSHHHHHHHHHHHH
T ss_pred hCCchhhH---HHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 55532222 24555555533210 123346666554443
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.58 E-value=8.7e-10 Score=126.14 Aligned_cols=472 Identities=13% Similarity=0.134 Sum_probs=300.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc--cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001791 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1012)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~--~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1012)
.-+..++..+.++|-+.|+-..-+|..+.+.+|+..+...-.+.. +++++.+|-+|...|.++- .++
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir-----------~~~ 136 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR-----------VSS 136 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-----------cHH
Confidence 355667788889999999999999999888788743222222222 3789999999999888853 245
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC-CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc
Q 001791 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN-GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~-~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1012)
..+.+...+.+.+.+ .++.||+.++.++.++.... |.- .-..+++.|..++.++++.+...|+.+|..+.+..+..+
T Consensus 137 i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 137 VLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 666777777888876 89999999999999998753 311 112467788888899999999999999999987655443
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001791 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1012)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l 258 (1012)
.. ....+..+++.+.+- ++--+...+++|.. ..+. +..... .+++.+...+++.++.+...+++++..+
T Consensus 215 ~l-~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~~---y~P~--~~~e~~----~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 215 ES-SNEWVNRLVYHLPEC-NEWGQLYILELLAA---QRPS--DKESAE----TLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred HH-HHHHHHHHHHHhhcC-ChHHHHHHHHHHHh---cCCC--CcHHHH----HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 22 233334444555554 44445566666633 2111 111122 4666666777788899999999999988
Q ss_pred Hccc-hHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCc
Q 001791 259 AGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1012)
Q Consensus 259 ~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1012)
.... +......+..+...++.+. ..+.+++..++..+..++.. .|. .+..-+..++.... |+
T Consensus 284 ~~~~~~~~~~~~~~rl~~pLv~L~---ss~~eiqyvaLr~I~~i~~~---~P~-------lf~~~~~~Ff~~~~----Dp 346 (746)
T PTZ00429 284 ASRCSQELIERCTVRVNTALLTLS---RRDAETQYIVCKNIHALLVI---FPN-------LLRTNLDSFYVRYS----DP 346 (746)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHhh---CCCccHHHHHHHHHHHHHHH---CHH-------HHHHHHHhhhcccC----Cc
Confidence 7543 3333333333434444443 23567888888888777762 332 22222222221111 11
Q ss_pred cccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH
Q 001791 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1012)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1012)
. .....-|+.+..... +.-...++..+.++..+.+...+..++.++|.++...+. ...
T Consensus 347 ----------------~-yIK~~KLeIL~~Lan-e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~ 404 (746)
T PTZ00429 347 ----------------P-FVKLEKLRLLLKLVT-PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAP 404 (746)
T ss_pred ----------------H-HHHHHHHHHHHHHcC-cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHH
Confidence 1 133344444444443 455677888888999899999999999999999987654 344
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc--CCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM--DDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l--~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
..+..++..+.+....+. .++.++..+.+..+.. + +++.++..+ .+-.++..+.+.+|.|+++++...
T Consensus 405 ~cV~~Ll~ll~~~~~~v~-e~i~vik~IlrkyP~~----~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~-- 474 (746)
T PTZ00429 405 DCANLLLQIVDRRPELLP-QVVTAAKDIVRKYPEL----L---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIE-- 474 (746)
T ss_pred HHHHHHHHHhcCCchhHH-HHHHHHHHHHHHCccH----H---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHh--
Confidence 555666666655444443 4566666665544321 1 445555433 222457888888999999876443
Q ss_pred cccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHH
Q 001791 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1012)
Q Consensus 496 ~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l 575 (1012)
..+.++..++.-+...+..||-.++.+...+....+.+..+ .+..++.... .+.++..+|.||+..+..+
T Consensus 475 ----~a~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~----~l~~vL~~~t--~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 475 ----NGKDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEP----QLNRVLETVT--THSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred ----hHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHH----HHHHHHHHHH--hcCCChhHHHHHHHHHHHH
Confidence 23556666666666677889998888888877665543322 2333333322 2234567999999888766
Q ss_pred H
Q 001791 576 G 576 (1012)
Q Consensus 576 ~ 576 (1012)
.
T Consensus 545 s 545 (746)
T PTZ00429 545 S 545 (746)
T ss_pred c
Confidence 4
No 39
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2e-12 Score=136.53 Aligned_cols=362 Identities=17% Similarity=0.203 Sum_probs=249.9
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhHh-hhcc-ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH
Q 001791 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG-DTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1012)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~-~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 222 (1012)
.+.+.+.+.+.+...+..+...++.+..... +.+. -....++|.+.++|....++.++..|.++|.+++..-......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 3444555556666666666666665554321 1111 1234778888888875447999999999999999864221111
Q ss_pred hHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhccCCcchHHHHHHHHHHHH
Q 001791 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1012)
Q Consensus 223 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~~ 300 (1012)
-.-. ..+..+..++.+++.+++..++..|+.++...+.. ..++- .++..++..+...+ ...+...+...++.
T Consensus 148 vv~a----gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~-Rd~vl~~g~l~pLl~~l~~~~-~~~~lRn~tW~LsN 221 (514)
T KOG0166|consen 148 VVDA----GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC-RDYVLSCGALDPLLRLLNKSD-KLSMLRNATWTLSN 221 (514)
T ss_pred cccC----CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH-HHHHHhhcchHHHHHHhcccc-chHHHHHHHHHHHH
Confidence 1111 23444666777899999999999999999877543 33332 45666666664432 23567778999999
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCC---cchHH
Q 001791 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPV 377 (1012)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~ 377 (1012)
+|+.+...|. ...+..++|.+...+...+. ....-+..++..|+..-... -+-..
T Consensus 222 lcrgk~P~P~-----~~~v~~iLp~L~~ll~~~D~-----------------~Vl~Da~WAlsyLsdg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 222 LCRGKNPSPP-----FDVVAPILPALLRLLHSTDE-----------------EVLTDACWALSYLTDGSNEKIQMVIDAG 279 (514)
T ss_pred HHcCCCCCCc-----HHHHHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence 9996431221 13567889988887765421 13344566666666322100 11223
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHh
Q 001791 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1012)
Q Consensus 378 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1012)
+.|.+..++.+.+..++-.|+.++|.++.+........+ ...+|.+...+. ++...+|..|+|++++++......+..
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqa 359 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQA 359 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHH
Confidence 677888899999999999999999999988775333333 346788888887 667779999999999999877766644
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH--HHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD--GIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~--~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 533 (1012)
-.-..++|.|+..++. ..-++|..|++++++++....++.+ .|+- .+++.+..+|.-.+..+-..++.++..+...
T Consensus 360 Vida~l~p~Li~~l~~-~ef~~rKEAawaIsN~ts~g~~~qi-~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 360 VIDANLIPVLINLLQT-AEFDIRKEAAWAISNLTSSGTPEQI-KYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHcccHHHHHHHHhc-cchHHHHHHHHHHHhhcccCCHHHH-HHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence 4556899999999998 7789999999999999988775533 4542 4788888888777888888999999998876
Q ss_pred hHh
Q 001791 534 SQE 536 (1012)
Q Consensus 534 ~~~ 536 (1012)
...
T Consensus 438 ~e~ 440 (514)
T KOG0166|consen 438 GEA 440 (514)
T ss_pred HHH
Confidence 553
No 40
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4.8e-12 Score=133.70 Aligned_cols=360 Identities=17% Similarity=0.203 Sum_probs=254.3
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHccchH
Q 001791 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAGTEPR 264 (1012)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~~~~~L~~l~~~~~~ 264 (1012)
.+.....+.+. +...+..+..++..+...-.++....... ..+++.+.+++. +.++..+..|..+|..+++....
T Consensus 68 ~~~~~~~~~S~-~~~~q~~a~~~~rkllS~~~~ppi~~vi~---~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSD-DPQQQLTATQAFRKLLSKERNPPIDEVIQ---SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCC-CHHHHHHHHHHHHHHHccCCCCCHHHHHH---cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchh
Confidence 34444444554 67778889999988887643321111111 134445555554 55688999999999999987765
Q ss_pred HHHHhHH-HHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhccCCCCccccC
Q 001791 265 FLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHS 341 (1012)
Q Consensus 265 ~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~ 341 (1012)
...-+++ ..++.++.++ .+.++.++.+|...+..++.. .|. +.+++ ..+++.++..+....
T Consensus 144 ~T~~vv~agavp~fi~Ll--~s~~~~v~eQavWALgNIagd---s~~----~Rd~vl~~g~l~pLl~~l~~~~------- 207 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLL--SSPSADVREQAVWALGNIAGD---SPD----CRDYVLSCGALDPLLRLLNKSD------- 207 (514)
T ss_pred hccccccCCchHHHHHHh--cCCcHHHHHHHHHHHhccccC---ChH----HHHHHHhhcchHHHHHHhcccc-------
Confidence 5443333 3445555555 345889999999999999873 332 22333 235666666554321
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHcCCC---cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-
Q 001791 342 AETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE- 417 (1012)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~- 417 (1012)
..+..+.+..+|..|+....+. ..+..++|.+..++.+.|..+..-|+++++.++.+..+.+.-.++
T Consensus 208 ---------~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~ 278 (514)
T KOG0166|consen 208 ---------KLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDA 278 (514)
T ss_pred ---------chHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 1235567888999998765222 345678899999999999999999999999999998876655544
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccc
Q 001791 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1012)
.++|.++.+|.++.+.|+..|++++|+++.........-.-...+|.+...+..++...++..||++++++..+.. +.+
T Consensus 279 gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~-~qi 357 (514)
T KOG0166|consen 279 GVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ-EQI 357 (514)
T ss_pred cchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH-HHH
Confidence 5789999999999999999999999998875543332223456888888888853667799999999999988554 333
Q ss_pred cCcHH-HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhccccccchhhHHHHHHHHH
Q 001791 498 TPYLD-GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISL 574 (1012)
Q Consensus 498 ~~~~~-~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~ 574 (1012)
...++ .++|.|+.++++.+..+|+.|..+++++......+...|+ ..+++.+..++.- .+ ..+-..+++++..
T Consensus 358 qaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~-~D---~~ii~v~Ld~l~n 433 (514)
T KOG0166|consen 358 QAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTC-PD---VKIILVALDGLEN 433 (514)
T ss_pred HHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccC-CC---hHHHHHHHHHHHH
Confidence 33333 6889999999999999999999999999887776667776 3588999988832 22 2234557777777
Q ss_pred HHhhh
Q 001791 575 VGMAV 579 (1012)
Q Consensus 575 l~~~~ 579 (1012)
+....
T Consensus 434 il~~~ 438 (514)
T KOG0166|consen 434 ILKVG 438 (514)
T ss_pred HHHHH
Confidence 76543
No 41
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=4.2e-08 Score=106.94 Aligned_cols=711 Identities=13% Similarity=0.169 Sum_probs=371.4
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhcccCCC-C-----
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPEN-G----- 140 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~~~-~----- 140 (1012)
+++|.+|+-|...|+.. ..- ...--.+++.+.++ .+..+|.+++..+...++..|... .
T Consensus 16 ~pdps~rk~aEr~L~~~---------e~q-----~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i 81 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSL---------EGQ-----QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKI 81 (960)
T ss_pred CCCCccCchHHHHHHHh---------ccC-----CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcccc
Confidence 66799999999999983 321 11122567777654 378999999999999998544321 1
Q ss_pred ----cchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001791 141 ----WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1012)
Q Consensus 141 ----~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 216 (1012)
-..+...++.++-+.......--..+++.+.+. ++-.-+++++|-+...+++. +-.+-...+..-.+++..+
T Consensus 82 ~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~---DFP~kWptLl~dL~~~ls~~-D~~~~~gVL~tahsiFkr~ 157 (960)
T KOG1992|consen 82 IEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR---DFPDKWPTLLPDLVARLSSG-DFNVINGVLVTAHSIFKRY 157 (960)
T ss_pred chhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc---ccchhhHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHhc
Confidence 112334445555555555555555566655543 33335899999988888876 6666666666666676654
Q ss_pred cCcchH-h----------HHHhhHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHH--------ccchHHHHHhHHHHHH
Q 001791 217 TSSADR-D----------RFQDLLPLMMRTLTESLN--NGNEATAQEALELLIELA--------GTEPRFLRRQLVDVVG 275 (1012)
Q Consensus 217 ~~~~~~-~----------~~~~~~~~ll~~l~~~l~--~~~~~~~~~~~~~L~~l~--------~~~~~~~~~~~~~i~~ 275 (1012)
...... . .|..-+..++....+..+ +++.......+..+.-++ ..-|++|+.+++..++
T Consensus 158 R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~ 237 (960)
T KOG1992|consen 158 RPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMG 237 (960)
T ss_pred CcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHH
Confidence 322111 1 111111122222222221 223222222233222222 2337889999988888
Q ss_pred HHHHhhcc--C-----Ccc----hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCC
Q 001791 276 SMLQIAEA--E-----SLE----EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1012)
Q Consensus 276 ~l~~~~~~--~-----~~~----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1012)
...+.+.. + +.+ +++|...++.+.-.+.. .+ ..+.+++..++.....++.....++.++
T Consensus 238 ~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k---Ye---Eef~~fl~~fv~~~W~LL~~~s~~~kyD---- 307 (960)
T KOG1992|consen 238 AFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK---YE---EEFQPFLPDFVTATWNLLVSTSPDTKYD---- 307 (960)
T ss_pred HHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh---hH---HHHHhhHHHHHHHHHHHHHhcCCCccHH----
Confidence 77766541 1 111 12344444444433331 11 2345566666666655555443322110
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHH
Q 001791 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1012)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~ 424 (1012)
.....|.+.|...+.. ...+ .++ ..++++..+.
T Consensus 308 --------~Lvs~Al~FLt~V~~r----~~y~--------------------~~F---------------~~~~vl~~i~ 340 (960)
T KOG1992|consen 308 --------YLVSKALQFLTSVSRR----PHYA--------------------ELF---------------EGENVLAQIC 340 (960)
T ss_pred --------HHHHHHHHHHHHHHhh----hhhH--------------------hhh---------------cchHHHHHHH
Confidence 0011122222222210 0000 000 0011222222
Q ss_pred hhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHH
Q 001791 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (1012)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~i 504 (1012)
+...=+|-..|..-- +-+-+.-+..+-+-+.-.+...-|.+||..++.++++++.. +.+.+...
T Consensus 341 e~VvlpN~~lR~eDe---------------ElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~ 404 (960)
T KOG1992|consen 341 EKVVLPNLILREEDE---------------ELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSE 404 (960)
T ss_pred HhhcccccccchhhH---------------HHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch-hHHHHHHH
Confidence 211111111111100 01112223333333332112234678899999999988643 44666666
Q ss_pred HHHHHHHh-hcC--ChhHHHHHHHHHHHHHHHhHhh------------hHhhH-hhhhHHHHHHHhhccccccchhhHHH
Q 001791 505 VSKLLVLL-QNG--KQMVQEGALTALASVADSSQEH------------FQKYY-DAVMPFLKAILVNATDKSNRMLRAKS 568 (1012)
Q Consensus 505 l~~l~~~l-~~~--~~~v~~~a~~~l~~l~~~~~~~------------~~~~~-~~il~~l~~~l~~~~~~~~~~lr~~a 568 (1012)
++.+++-. .++ +..-+..++..+.+++...+.. ...|+ ..++|.|.+ ++..+...+|..+
T Consensus 405 v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s----~~vn~~pilka~a 480 (960)
T KOG1992|consen 405 VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLS----PNVNEFPILKADA 480 (960)
T ss_pred HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhcc----Cccccccchhhcc
Confidence 66665533 233 3556677777777776552211 11222 334444332 2333556677766
Q ss_pred HHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcC---------CcccchhhhhHHH
Q 001791 569 MECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQ---------DFLPYMSVVMPPL 639 (1012)
Q Consensus 569 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~l~~i~~~l 639 (1012)
++-+-.+-..+|++....+ ++.+...... ....+..++..++..+-...+. ++.||+..++..|
T Consensus 481 IKy~~~FR~ql~~~~lm~~----~p~li~~L~a---~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nL 553 (960)
T KOG1992|consen 481 IKYIYTFRNQLGKEHLMAL----LPRLIRFLEA---ESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNL 553 (960)
T ss_pred cceeeeecccCChHHHHHH----HHHHHHhccC---cchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHH
Confidence 7666555556665544333 3333332211 1223555666566655544433 4677888888888
Q ss_pred HHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhcc
Q 001791 640 LQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719 (1012)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~ 719 (1012)
++.++.... .+- +..++++-.+.........|+.+.++..+.+
T Consensus 554 f~a~s~p~~-----------------~En--------------------eylmKaImRii~i~~~~i~p~~~~~l~~Lte 596 (960)
T KOG1992|consen 554 FKALSLPGK-----------------AEN--------------------EYLMKAIMRIISILQSAIIPHAPELLRQLTE 596 (960)
T ss_pred HHhccCCcc-----------------ccc--------------------HHHHHHHHHHHHhCHHhhhhhhhHHHHHHHH
Confidence 877654211 011 1234556666666667777888777776655
Q ss_pred ccCc----cCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 001791 720 LLKF----YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNEC 795 (1012)
Q Consensus 720 ~l~~----~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 795 (1012)
.+.. ..++..-..-.++++-+++.. +...+..+..+....+|.+...+.+| -.+...-++..++.+
T Consensus 597 iv~~v~KNPs~P~fnHYLFEsi~~li~~t---------~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~l 666 (960)
T KOG1992|consen 597 IVEEVSKNPSNPQFNHYLFESIGLLIRKT---------CKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVL 666 (960)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHHH---------hccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4322 224455566777777777765 23345566777777778776666543 334555667888888
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccc
Q 001791 796 IQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAF 875 (1012)
Q Consensus 796 ~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~ 875 (1012)
+..++.. .++.+.++++.+.. ..+= +.. .-...+..++..+++..+..+
T Consensus 667 ve~~~~~-ip~~~~~l~~~lLs---p~lW--------------------------~r~-gNipalvrLl~aflk~g~~~~ 715 (960)
T KOG1992|consen 667 VEHSSGT-IPDSYSPLFPPLLS---PNLW--------------------------KRS-GNIPALVRLLQAFLKTGSQIV 715 (960)
T ss_pred HHhcCCC-CchhHHHHHHHhcC---HHHH--------------------------hhc-CCcHHHHHHHHHHHhcCchhh
Confidence 8887663 34455555544332 1110 000 011246677777777766555
Q ss_pred h--hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-hHhhhHhHHHHHHhhccCCC-h-hHHHHHHHHHHHH
Q 001791 876 L--PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEACNDEN-Q-DVRQAAVYGLGVC 950 (1012)
Q Consensus 876 ~--~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~~l~~l~~~~-~-~vr~~a~~~lg~l 950 (1012)
. ..+..++..+.+.+. ++..+ ..++-++..++...+.. +.||+.++.-.++.++++.. + -++....+..-..
T Consensus 716 ~~~~~l~~iLGifqkLia-Ska~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ 792 (960)
T KOG1992|consen 716 EAADKLSGILGIFQKLIA-SKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFT 792 (960)
T ss_pred cccccchhHHHHHHHHhc-Ccccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 4 444455555555552 22222 34667788888887765 67899999999999998754 3 3666666666666
Q ss_pred HhhcCCchHHH
Q 001791 951 AEFGGSVVKPL 961 (1012)
Q Consensus 951 ~~~~~~~~~~~ 961 (1012)
+++++....+.
T Consensus 793 ik~~~~~l~e~ 803 (960)
T KOG1992|consen 793 IKKGGLMLAEV 803 (960)
T ss_pred HHhhhHHHHHH
Confidence 66666443333
No 42
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.3e-08 Score=109.68 Aligned_cols=476 Identities=14% Similarity=0.171 Sum_probs=276.0
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhHhh
Q 001791 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGD 176 (1012)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~ 176 (1012)
++..+.+...|++++.+ .+..||..+|..++.++... |..--.+.+..++..+.-. +...-++++.+|+.++..--
T Consensus 336 ~eivE~vie~Lls~l~d-~dt~VrWSaAKg~grvt~rl-p~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl- 412 (1133)
T KOG1943|consen 336 PEIVEFVIEHLLSALSD-TDTVVRWSAAKGLGRVTSRL-PPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL- 412 (1133)
T ss_pred HHHHHHHHHHHHHhccC-CcchhhHHHHHHHHHHHccC-cHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC-
Confidence 46778888999999986 89999999999999999874 4222345556666644332 35677899999998876510
Q ss_pred hccccHHHHHHHHHHhhcCC-------CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHH-HHHHhcCChHHH
Q 001791 177 TLTPHLKHLHAVFLNCLTNS-------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTL-TESLNNGNEATA 248 (1012)
Q Consensus 177 ~~~~~~~~l~~~l~~~l~~~-------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l-~~~l~~~~~~~~ 248 (1012)
.+...+..++|++.+++.=+ ....||.+|.-.+-++...++ +..+.+++..+...+ ..++=+++-..|
T Consensus 413 Llps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays----~~~l~p~l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 413 LLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS----PSDLKPVLQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred cchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC----hhhhhHHHHHHHHHHHHHHhcCchhhHh
Confidence 01114678888888776421 257899999999999998874 333333333333322 233446778899
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH
Q 001791 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (1012)
Q Consensus 249 ~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (1012)
.+|..+|.+.+...+.+ ||-.+++... ....-..|.. ++..++.. ...++.|...++..++.
T Consensus 489 RAAsAAlqE~VGR~~n~--p~Gi~Lis~~------dy~sV~~rsN---cy~~l~~~-------ia~~~~y~~~~f~~L~t 550 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNF--PHGISLISTI------DYFSVTNRSN---CYLDLCVS-------IAEFSGYREPVFNHLLT 550 (1133)
T ss_pred HHHHHHHHHHhccCCCC--CCchhhhhhc------chhhhhhhhh---HHHHHhHH-------HHhhhhHHHHHHHHHHh
Confidence 99999999998775533 2222222211 1111122333 33444431 12344566666666654
Q ss_pred h-hccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 001791 329 M-LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEG 407 (1012)
Q Consensus 329 ~-l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~ 407 (1012)
. ++ .|+ ...+..+..+|..++...+ +......++.+.....+.+...|++...+.|.+..+
T Consensus 551 ~Kv~------HWd-----------~~irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 551 KKVC------HWD-----------VKIRELAAYALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred cccc------ccc-----------HHHHHHHHHHHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 3 22 242 2245567778888887665 444445556666667778999999999999998766
Q ss_pred cHHHH--HH--------hHHHHHHHHHhhCCCC--ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCCh
Q 001791 408 CAKVM--VK--------NLEQVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP 475 (1012)
Q Consensus 408 ~~~~~--~~--------~l~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 475 (1012)
+...- .. -++.+++.+...-... ....|.+.+..+..+...-.+..........-..+.+.+.+ ++
T Consensus 613 ~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~-~n- 690 (1133)
T KOG1943|consen 613 LRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTL-PN- 690 (1133)
T ss_pred hhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcc-hH-
Confidence 54211 11 1122233332222111 25677788888877765433222112223333344455555 55
Q ss_pred HHHHHHHHHHHHHhhcCCcccccCcHH-HHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH
Q 001791 476 RVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNG-KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1012)
Q Consensus 476 ~v~~~a~~al~~l~~~~~~~~l~~~~~-~il~~l~~~l~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l 553 (1012)
.+|..|.++++.++...-... ++.. .++..++.-+.+. ...+|.....+++.+....=. .++.+.+...+....
T Consensus 691 ~i~~~av~av~~l~s~y~~~d--~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~--~~~q~~lc~~~l~~~ 766 (1133)
T KOG1943|consen 691 QIRDAAVSAVSDLVSTYVKAD--EGEEAPLITRYLSRLTKCSEERIRRGLILALGVLPSELIH--RHLQEKLCKLVLELL 766 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--chhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhc--hHHHHHHHHHHhccC
Confidence 799999999999987543211 2222 3656666555555 567777666666665522110 012222222222221
Q ss_pred hhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCC-CCCC----CchhHHHHHHHHHHHHHhc
Q 001791 554 VNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQ-METD----DPTTSYMLQAWARLCKCLG 625 (1012)
Q Consensus 554 ~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~-~~~~----~~~~~~~~~~~~~l~~~~~ 625 (1012)
. .+ -...-|...+..+..+...++...+....+++++.+++..++. .+.. .-+|+.++.++..+...+.
T Consensus 767 p--~d-~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~ 840 (1133)
T KOG1943|consen 767 P--SD-AWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLS 840 (1133)
T ss_pred c--cc-ccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhc
Confidence 1 11 1334466677777777777775556666777777777733321 1111 2378888888777765554
No 43
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.47 E-value=4.7e-10 Score=126.50 Aligned_cols=566 Identities=15% Similarity=0.164 Sum_probs=355.5
Q ss_pred chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcC
Q 001791 116 SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTN 195 (1012)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~ 195 (1012)
.+-.-|.....-+.+++..........+++|++.+.. ..+..+...+..-++.+....+.. .+...+.+.+.....+
T Consensus 94 ~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~--~~~~~ll~~le~l~~~ 170 (759)
T KOG0211|consen 94 TDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGP--EYAHMLLPPLELLATV 170 (759)
T ss_pred hhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccch--hHHHHhhHHHHhhhHH
Confidence 3445566666667777766555445678999999988 666677777777777777664322 1344455556555555
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch-HHHHHhHHHHH
Q 001791 196 SNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQLVDVV 274 (1012)
Q Consensus 196 ~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~~~~i~ 274 (1012)
. ...+|..++.++...+..++.. .... .++..+......+-...|..++.++.......+ ..+..-...++
T Consensus 171 e-et~vr~k~ve~l~~v~~~~~~~---~~~~----~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~ 242 (759)
T KOG0211|consen 171 E-ETGVREKAVESLLKVAVGLPKE---KLRE----HLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIV 242 (759)
T ss_pred H-HHHHHHHHHHHHHHHHHhcChH---HHHH----HHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHH
Confidence 5 6789999999999999877432 1122 223333332222223346667777777765555 44555444444
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcc
Q 001791 275 GSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSN 354 (1012)
Q Consensus 275 ~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~ 354 (1012)
..+. .+..+.+|..+.+-+..+++. .+. ..-...+.+....+..+ +..+.
T Consensus 243 ~~lc-----~d~~~~Vr~~~a~~l~~~a~~---~~~-----~~~~s~v~~~~~~L~~D-----------------dqdsV 292 (759)
T KOG0211|consen 243 QSLC-----QDDTPMVRRAVASNLGNIAKV---LES-----EIVKSEVLPTLIQLLRD-----------------DQDSV 292 (759)
T ss_pred Hhhc-----cccchhhHHHHHhhhHHHHHH---HHH-----HHHHhhccHHHhhhhhc-----------------chhhH
Confidence 4332 345677888887777777763 111 11122233333333221 13456
Q ss_pred hhhHHHHHHHHHHHcCCC-cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001791 355 YSVGQECLDRLAIALGGN-TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1012)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1012)
+.+|...+..+...+..+ +....+.+.+.+...+.+|.+|+.....+..+....+. ........+.....++|....
T Consensus 293 r~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e 370 (759)
T KOG0211|consen 293 REAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWE 370 (759)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhh
Confidence 778888888888777655 66667788888888999999999888877777665543 123345678888899999999
Q ss_pred HHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHh
Q 001791 434 VRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1012)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l 512 (1012)
+|.++..-...++....... ..-..+.++|.+.....| .+..||.+.+..+..+....+.+ .-+..+++.+...+
T Consensus 371 ~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~~~k~---~ti~~llp~~~~~l 446 (759)
T KOG0211|consen 371 VRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPILPKE---RTISELLPLLIGNL 446 (759)
T ss_pred hhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCccCCcC---cCccccChhhhhhc
Confidence 99999988888887765211 012345667888888888 89999988888877776666533 33444566777777
Q ss_pred hcCChhHHHHHHHHHHHHHHHhH-hhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHH
Q 001791 513 QNGKQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQV 591 (1012)
Q Consensus 513 ~~~~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i 591 (1012)
++..+.||.....-+..+-...+ ....-+.+..+|.+...-. +..+.+|...++.+..++...|.+.|.+....+
T Consensus 447 ~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~----d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l 522 (759)
T KOG0211|consen 447 KDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE----DLLWRVRLAILEYIPQLALQLGVEFFDEKLAEL 522 (759)
T ss_pred chhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc----chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHH
Confidence 88888888877766644433222 1233455677777776632 236778888889988888877755444432222
Q ss_pred HHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchh
Q 001791 592 MEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1012)
Q Consensus 592 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1012)
...+-. +....++..+...+..++..+|. .-+...+++.++.....+ ++.
T Consensus 523 ----~~~~l~--d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~-~y~--------------------- 572 (759)
T KOG0211|consen 523 ----LRTWLP--DHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQD-NYL--------------------- 572 (759)
T ss_pred ----HHhhhh--hhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCc-ccc---------------------
Confidence 221110 11235788889999999999993 333466777776665321 111
Q ss_pred hcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcC
Q 001791 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKG 751 (1012)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 751 (1012)
. |.+.+.++..++..+|..+. .+.+++.+..+..+ ..++||-.+++.|..+.....
T Consensus 573 --------~-------R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l~~D-~vanVR~nvak~L~~i~~~L~------ 628 (759)
T KOG0211|consen 573 --------V-------RMTTLFSIHELAEVLGQEIT--CEDLLPVFLDLVKD-PVANVRINVAKHLPKILKLLD------ 628 (759)
T ss_pred --------h-------hhHHHHHHHHHHHHhccHHH--HHHHhHHHHHhccC-CchhhhhhHHHHHHHHHhhcc------
Confidence 1 23344556677777665432 35566666666664 488999999999999988762
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 001791 752 LAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECI 796 (1012)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 796 (1012)
.+. .+..+-++.+.+..+.+.+++.....+.+.+.
T Consensus 629 ------~~~----~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 629 ------ESV----RDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred ------hHH----HHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 122 22222334445555666666665655555433
No 44
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=99.44 E-value=1e-09 Score=123.82 Aligned_cols=539 Identities=13% Similarity=0.113 Sum_probs=337.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc--Cch--HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ--DPD--SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~--~p~--~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
++.+.+......+-++...+..++..+..- .|+ ......++.+.......+|+-+.-.|.+..... ++
T Consensus 121 ~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~--------~~ 192 (759)
T KOG0211|consen 121 ELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGL--------PK 192 (759)
T ss_pred hhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhc--------Ch
Confidence 444555555555556777666677654441 121 112222333334566788999999999987654 33
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc
Q 001791 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1012)
+........++..+.......-|..++.+++..+...-+...-.++.+...++.++.++.+|..+..-++.+....+...
T Consensus 193 ~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~ 272 (759)
T KOG0211|consen 193 EKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI 272 (759)
T ss_pred HHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH
Confidence 33334444455555443233445666677776654432223456788888888899999999999999999988877643
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001791 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1012)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l 258 (1012)
....+.+.+.+...|. ...||..|+.++..+...+.... +....+.+.+.+..++.++.++......+..+
T Consensus 273 --~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~------d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L 343 (759)
T KOG0211|consen 273 --VKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD------DVVKSLTESLVQAVEDGSWRVSYMVADKFSEL 343 (759)
T ss_pred --HHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch------hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhH
Confidence 3566778888888887 78999999999999999875431 23335666677777778888888777777766
Q ss_pred HccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCcc
Q 001791 259 AGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPL 338 (1012)
Q Consensus 259 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 338 (1012)
....... ..-...++...... .+.....|.....-...++......+ ...-..+.++|.+.....+..
T Consensus 344 ~~~~~~~--~~~~~~~~~~~~l~--~~~~~e~r~a~a~~~~~l~~~l~~~~----~~~i~~~~ilp~~~~lv~d~~---- 411 (759)
T KOG0211|consen 344 SSAVGPS--ATRTQLVPPVSNLL--KDEEWEVRYAIAKKVQKLACYLNASC----YPNIPDSSILPEVQVLVLDNA---- 411 (759)
T ss_pred HHHhccc--cCcccchhhHHHHh--cchhhhhhHHhhcchHHHhhhcCccc----ccccchhhhhHHHHHHHhccc----
Confidence 5433321 11112222223333 33345555544433333333211000 001122445666655543321
Q ss_pred ccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH-HHHHHhHH
Q 001791 339 WHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLE 417 (1012)
Q Consensus 339 ~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~ 417 (1012)
...+.+.......+...+|.+...+.++|.+...+++....+|.....-+..+-.... ..+..+.+
T Consensus 412 -------------~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~ 478 (759)
T KOG0211|consen 412 -------------LHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN 478 (759)
T ss_pred -------------chHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence 1122233333333444455567777888888889999999999887765544332221 12334556
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccc
Q 001791 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1012)
..+|.+...-.|.++++|.+..+.+-.++...+..+ +-+.+-+.+...+.| ....+|.+|...+..++..++.
T Consensus 479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~---~~~~~~~l~~~~l~d-~v~~Ir~~aa~~l~~l~~~~G~--- 551 (759)
T KOG0211|consen 479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEF---FDEKLAELLRTWLPD-HVYSIREAAARNLPALVETFGS--- 551 (759)
T ss_pred hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHH---hhHHHHHHHHhhhhh-hHHHHHHHHHHHhHHHHHHhCc---
Confidence 788888888888899999999999999988777433 223344455555666 5678999999999999999883
Q ss_pred cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Q 001791 498 TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1012)
Q Consensus 498 ~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1012)
..+...+++.++....+++...|...+.++..++..+|..+ +...++|.+..... +....+|..+...+..+..
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei--~~~~Llp~~~~l~~----D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI--TCEDLLPVFLDLVK----DPVANVRINVAKHLPKILK 625 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH--HHHHHhHHHHHhcc----CCchhhhhhHHHHHHHHHh
Confidence 35677888888888777788999999999999999999764 44667777777643 2344588888888877776
Q ss_pred hhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHH
Q 001791 578 AVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCK 622 (1012)
Q Consensus 578 ~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~ 622 (1012)
.+.......++.++...+.. +.+-.++-++..+++.+..
T Consensus 626 ~L~~~~~~~~v~pll~~L~~------d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 626 LLDESVRDEEVLPLLETLSS------DQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hcchHHHHHHHHHHHHHhcc------CcccchhHHHHHHHHHHHH
Confidence 66544444444334333332 1223355566666665543
No 45
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=2.9e-07 Score=105.23 Aligned_cols=346 Identities=12% Similarity=0.067 Sum_probs=192.2
Q ss_pred HHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHccchHHHHHh--HHHHHHHHHHhh
Q 001791 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN--NGNEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIA 281 (1012)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~--~~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~~i~~~l~~~~ 281 (1012)
..+|.-++...+.+ .+..-++.+++.+...+. +.+..++..++.||..+.......-..+ ....+..++...
T Consensus 72 ~~LL~li~~~VPs~----vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~ 147 (1176)
T KOG1248|consen 72 AYLLVLILKYVPSP----VLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFA 147 (1176)
T ss_pred HHHHHHHHhhCCHH----HHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHH
Confidence 56666666666432 233334445555555554 6678899999999998875432211111 111121222222
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHH
Q 001791 282 EAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQEC 361 (1012)
Q Consensus 282 ~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~ 361 (1012)
-+..+.+|..|...+..+... .|.+...-.|........++..+...-... +....--...+
T Consensus 148 --~h~~pkvRk~a~~~i~~VL~~---p~~~~~~~HpA~~~vak~cl~~~e~~~~~a-------------~~t~v~~~L~L 209 (1176)
T KOG1248|consen 148 --AHKKPKVRKAAQRGIAAVLKG---PPFAPDAEHPASLSVAKFCLALIESKLGSA-------------ENTTVLRSLML 209 (1176)
T ss_pred --hcCchHHHHHHHHHHHHHHcC---CCCCccccchHHHHHHHHHHHHHHhhhchH-------------HHHHHHHHHHH
Confidence 245788999999999888873 121111112333344444444433211000 00000001222
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHH
Q 001791 362 LDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAIN 440 (1012)
Q Consensus 362 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~ 440 (1012)
|..+...++ ...+..+-..+.......+..++..++.++..+....+.... .....++..+..+--+. ..++..+.|
T Consensus 210 l~~~~~~~p-~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~-~D~~~t~~W 287 (1176)
T KOG1248|consen 210 LRDVLSTFP-RPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSE-NDDLLTVAW 287 (1176)
T ss_pred HHHhhccCC-HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCc-cchHHHHHH
Confidence 333322232 333333434444444567788899999999888876554222 22233444444432222 222222222
Q ss_pred H------HHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHH-HHHHhh
Q 001791 441 A------IGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK-LLVLLQ 513 (1012)
Q Consensus 441 ~------l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~-l~~~l~ 513 (1012)
. ...++. ...+..-...+.+++..+..+.+ ..+.+...+..++.++...+.. +.+.+... +...++
T Consensus 288 ~~v~~~~~~~la~-~q~~~~~~~~~~~~~~~~t~~~s-~~~e~~q~a~q~l~~il~~sv~-----~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 288 LKVLNEAHDILAT-LQEEKALQALPRLFSLFFTILES-LIEELVQAASQSLKEILKESVT-----VIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHH-hCHHHHHHhhhhhhhHHHHHHhc-ccHHHHHHHHHHHHHHhcccCc-----ccHHHHHHHHHHHHc
Confidence 1 112221 12222235677888888887666 7888888899999998876542 55555555 555666
Q ss_pred cCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhh
Q 001791 514 NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD 586 (1012)
Q Consensus 514 ~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~ 586 (1012)
-....+-..++..+..+...+|+...||+-..+..+...=.. ++...+...=.|+|...+++|++.+..
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~----~d~~~~~~ld~~IGSAV~AmGPe~vL~ 429 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS----PDFFHKLQLDQCIGSAVRAMGPERVLT 429 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC----CCCccHHHHHHHHHHHHHhhCHHHHHH
Confidence 666778889999999999999998888887777777664221 222334455678898889999876543
No 46
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.33 E-value=4e-06 Score=93.07 Aligned_cols=165 Identities=14% Similarity=0.174 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCH
Q 001791 764 LSDFIIPALVEALHKEP---DTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDA 840 (1012)
Q Consensus 764 ~~~~~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~ 840 (1012)
+....+|.+++.+.... ....+.-.+..+..+++...+.++...+...++.+.++.... + |
T Consensus 610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs-------------d--D- 673 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS-------------D--D- 673 (1005)
T ss_pred hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec-------------C--C-
Confidence 44556687777775332 234455566777767776555566666666777766655221 1 1
Q ss_pred HHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccch-----hh--HHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 001791 841 EESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL-----PF--FDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQC 913 (1012)
Q Consensus 841 ~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~-----~~--~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~ 913 (1012)
...+..+.+|+..++....+... |- +..++..+.+.+.+..+......+=..+..++.+.
T Consensus 674 -------------~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a 740 (1005)
T KOG2274|consen 674 -------------HETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHA 740 (1005)
T ss_pred -------------hHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHH
Confidence 12444678888888776433321 11 22344444455544444444444445566778888
Q ss_pred hhhhHhhhHhHHHHHHhhccC-CChhHHHHHHHHHHHHHhhcCCc
Q 001791 914 REAALKYYETYLPFLLEACND-ENQDVRQAAVYGLGVCAEFGGSV 957 (1012)
Q Consensus 914 ~~~~~~~~~~l~~~~l~~l~~-~~~~vr~~a~~~lg~l~~~~~~~ 957 (1012)
|..+.|.+++++.+++.+|.. +...|-++-+..++.|.....+.
T Consensus 741 ~~el~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~ 785 (1005)
T KOG2274|consen 741 SSELGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQ 785 (1005)
T ss_pred HHHhchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHH
Confidence 999999999999999999876 67889999988888887765443
No 47
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.31 E-value=6.1e-11 Score=114.77 Aligned_cols=361 Identities=15% Similarity=0.209 Sum_probs=227.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhh-Hhhhcccc-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH
Q 001791 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQY-IGDTLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1012)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 222 (1012)
+|.+.+.+.+.+.+....|..-++.+... ..+.+.+. -..++|.|.++|......-.+..|..++.++.+.-......
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 47777777777777777777766655442 22223222 24567888888854425566779999999988764321111
Q ss_pred hHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhccCCcchHHHHHHHHHHHH
Q 001791 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1012)
Q Consensus 223 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~~ 300 (1012)
-.-..-+|.++ +.+.+++.+++..++..|+.++...+. ...|+- ..++.++.++.....+-.+-..+...++.
T Consensus 153 Vvd~~AVPlfi----qlL~s~~~~V~eQavWALGNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFI----QLLSSTEDDVREQAVWALGNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHH----HHHcCchHHHHHHHHHHhccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 11123345444 445577889999999999999865543 233321 23344444443222223344455566666
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHH
Q 001791 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 380 (1012)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 380 (1012)
+|+.+ .| .|+| ......+|
T Consensus 228 lcRGk--nP--------------------------~P~w---------------------------------~~isqalp 246 (526)
T COG5064 228 LCRGK--NP--------------------------PPDW---------------------------------SNISQALP 246 (526)
T ss_pred hhCCC--CC--------------------------CCch---------------------------------HHHHHHHH
Confidence 66631 11 1111 11223445
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH-HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001791 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ-VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1012)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~-i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1012)
.+..++.+.+..+-.-|+++++.++.+..+.+...++. +.+.++..|.+++..|+.-|++.+|++..........-.-.
T Consensus 247 iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~ 326 (526)
T COG5064 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINC 326 (526)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheec
Confidence 55556666777788889999999999887765554442 44678889999999999999999999986542221011123
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH-HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH--h
Q 001791 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--E 536 (1012)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~-~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~ 536 (1012)
..++.+...|.+ +...+|..||+.++++...-. +.+...++ .++|.|+.++...+..+|+.|+.++++.....- .
T Consensus 327 G~L~a~~~lLs~-~ke~irKEaCWTiSNITAGnt-eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~P 404 (526)
T COG5064 327 GALKAFRSLLSS-PKENIRKEACWTISNITAGNT-EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRP 404 (526)
T ss_pred ccHHHHHHHhcC-hhhhhhhhhheeecccccCCH-HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 456666666777 777999999999999865443 22323333 577889999999999999999999999876543 2
Q ss_pred hhHhhH--hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Q 001791 537 HFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1012)
Q Consensus 537 ~~~~~~--~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1012)
+...|+ ..++..|.+++.- .+..+-..+++|+..+.+
T Consensus 405 D~iryLv~qG~IkpLc~~L~~----~dNkiiev~LD~~eniLk 443 (526)
T COG5064 405 DIIRYLVSQGFIKPLCDLLDV----VDNKIIEVALDAIENILK 443 (526)
T ss_pred hHHHHHHHccchhHHHHHHhc----cCccchhhhHHHHHHHHh
Confidence 445565 3567777777753 223344556777777653
No 48
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.28 E-value=8.4e-08 Score=107.70 Aligned_cols=358 Identities=18% Similarity=0.290 Sum_probs=239.3
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccc-cHHHHH
Q 001791 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLH 186 (1012)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~ 186 (1012)
++..|.. .+...-..++.+|..+.....+....+++.+.+...+.++++.+|..++..++.+.+........ .-..++
T Consensus 43 lf~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~ 121 (503)
T PF10508_consen 43 LFDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELL 121 (503)
T ss_pred HHHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHH
Confidence 7777776 45555567888899888866554456888999999999999999999999999887654332111 225688
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHH
Q 001791 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1012)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~ 266 (1012)
+.+..++.++ +..|...|+++|..+...-.. ....|.. ..+..+...+...+..+|..+++++..++...+..+
T Consensus 122 ~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~--~~~l~~~---~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 122 PLIIQCLRDP-DLSVAKAAIKALKKLASHPEG--LEQLFDS---NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred HHHHHHHcCC-cHHHHHHHHHHHHHHhCCchh--HHHHhCc---chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 8999999998 999999999999999874210 1111222 235556666666577899999999999998887776
Q ss_pred HHhHH-HHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH--HHHHHHHHhhccCCCCccccCCC
Q 001791 267 RRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN--RLFAILMSMLLDIEDDPLWHSAE 343 (1012)
Q Consensus 267 ~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~ 343 (1012)
..... .+++.++..+.+ .|.-++..+++++..+++. +. ...|+. .+++.+...+....+|+.+
T Consensus 196 ~~~~~sgll~~ll~eL~~--dDiLvqlnalell~~La~~----~~----g~~yL~~~gi~~~L~~~l~~~~~dp~~---- 261 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDS--DDILVQLNALELLSELAET----PH----GLQYLEQQGIFDKLSNLLQDSEEDPRL---- 261 (503)
T ss_pred HHHHhccHHHHHHHHhcC--ccHHHHHHHHHHHHHHHcC----hh----HHHHHHhCCHHHHHHHHHhccccCCcc----
Confidence 55443 477777776643 3556789999999999984 21 122332 3666666666554332100
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001791 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1012)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1012)
. .-.++..+ ..+|.++...+..+....+.++..+
T Consensus 262 ---------~------------------~~~l~g~~-------------------~f~g~la~~~~~~v~~~~p~~~~~l 295 (503)
T PF10508_consen 262 ---------S------------------SLLLPGRM-------------------KFFGNLARVSPQEVLELYPAFLERL 295 (503)
T ss_pred ---------c------------------chhhhhHH-------------------HHHHHHHhcChHHHHHHHHHHHHHH
Confidence 0 01111111 2233444433333345567788888
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhH-H----hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc---
Q 001791 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDL-Q----NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE--- 495 (1012)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~----~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~--- 495 (1012)
...+...++..+..|+.++|.++....... . .+.+..++..+...... ....+|.++..++..++......
T Consensus 296 ~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~~~~~~ 374 (503)
T PF10508_consen 296 FSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILTSGTDRQDN 374 (503)
T ss_pred HHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCCCCchH
Confidence 888889999999999999999987653321 1 12345566666666666 66789999999999998654421
Q ss_pred cc----cCcHHH----HHH-HHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001791 496 IL----TPYLDG----IVS-KLLVLLQNGKQMVQEGALTALASVADS 533 (1012)
Q Consensus 496 ~l----~~~~~~----il~-~l~~~l~~~~~~v~~~a~~~l~~l~~~ 533 (1012)
.+ ..++.. -.. .+.++++.+.+++|..++..+..++..
T Consensus 375 ~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 375 DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 11 011110 111 566777888899999999999998864
No 49
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.2e-05 Score=91.25 Aligned_cols=485 Identities=15% Similarity=0.195 Sum_probs=250.4
Q ss_pred ccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccc
Q 001791 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLW 339 (1012)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~ 339 (1012)
...|..++|+++.+++.+.........+...-..+++.++.+++..++. ...+.++.-+.. +..++..+......
T Consensus 60 QeqP~LLDp~L~~~v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvrgyK-~v~k~fPh~V~~-Le~il~lL~~~nps--- 134 (1133)
T KOG1943|consen 60 QEQPHLLDPHLESIVPNLLDIVRKFTIDLGELHLAFEYLYILCKVRGYK-AVLKLFPHQVSD-LEPILDLLERQNPS--- 134 (1133)
T ss_pred hhchhhccchHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHhhccch-hhHHhCCcHHHH-HHHHHHHHhccCcc---
Confidence 4457888999999998887776544444444566788899999874322 122233332222 23333333321100
Q ss_pred cCCCCCCccccCCcchhhHHHHHHHHHHHc---------C------CCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 001791 340 HSAETEDEDAGESSNYSVGQECLDRLAIAL---------G------GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQI 404 (1012)
Q Consensus 340 ~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~---------~------~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l 404 (1012)
+.+.|..-...+--|+..+ . +..++..++..+..++.+. |..|.+|+..++..
T Consensus 135 -----------s~~~~~~ryilLlWLsvlllnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~-~~~r~~aalllsk~ 202 (1133)
T KOG1943|consen 135 -----------SFSDWETRYILLLWLSVLLLNPFDLSRLDESLTFDKTNVILRILSFFENYLISS-GILRRSAALLLSKL 202 (1133)
T ss_pred -----------hHHHHHHHHHHHHHHHHHHcCCCcccccCcccccCCchHHHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 1112222222222222111 1 1112334444444455444 47788888888876
Q ss_pred HhhcHHHHHHhHHHHHHHHHhhCCCCChh--HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCC-hHHHHHH
Q 001791 405 AEGCAKVMVKNLEQVLSMVLNSFRDPHPR--VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN-PRVQAHA 481 (1012)
Q Consensus 405 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~-~~v~~~a 481 (1012)
..... ....+..++.-++.+-+...++ .....+.++..+.+........++....+..+-..--+..+ .-+|+--
T Consensus 203 ~sR~D--~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKll 280 (1133)
T KOG1943|consen 203 FSRTD--VKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLL 280 (1133)
T ss_pred ccccc--HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHH
Confidence 64322 1122444444455555544444 44455566666665554333234444444333322111011 1233333
Q ss_pred HHHHHHHh---------------------hcC------------------CcccccCcHHHHHHHHHHHhhcCChhHHHH
Q 001791 482 ASAVLNFS---------------------ENC------------------TPEILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1012)
Q Consensus 482 ~~al~~l~---------------------~~~------------------~~~~l~~~~~~il~~l~~~l~~~~~~v~~~ 522 (1012)
+..+.++- .++ +.+.+..+++.+++.|++.+++.+..+|-.
T Consensus 281 vKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWS 360 (1133)
T KOG1943|consen 281 VKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWS 360 (1133)
T ss_pred HHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHH
Confidence 33333221 010 011233567788999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhh-hHHHHHHHHHHHhc-
Q 001791 523 ALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD-DAKQVMEVLMSLQG- 600 (1012)
Q Consensus 523 a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~-~~~~i~~~l~~l~~- 600 (1012)
|...+|.+....+.. ..++++...++.+...+++..++ .++-+++.++.. ....| -++.++++++.-..
T Consensus 361 aAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~r---GlLlps~l~dVvplI~kaL~Y 431 (1133)
T KOG1943|consen 361 AAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWH---GACLALAELALR---GLLLPSLLEDVVPLILKALHY 431 (1133)
T ss_pred HHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhc---CCcchHHHHHHHHHHHHHhhh
Confidence 999999999998854 44556666666554433333333 355566666532 12222 35667776665211
Q ss_pred -C---CCCCCCchhHHHHHHHHHHHHHhc-CCcccchhhhhHHHHHHhccCCCccccCCCCCccccC-----CCCcccch
Q 001791 601 -S---QMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIED-----SDDDSMET 670 (1012)
Q Consensus 601 -~---~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 670 (1012)
. .......+|+++.-.+-.+++++. .++.|++..+.+.|+...-+|+...++-+-..+-.|. .-...++-
T Consensus 432 d~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~L 511 (1133)
T KOG1943|consen 432 DVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISL 511 (1133)
T ss_pred hhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhh
Confidence 1 112234477766555555777664 4588999999999999988888766543211000000 00000000
Q ss_pred hhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHc
Q 001791 671 ITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEK 750 (1012)
Q Consensus 671 ~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 750 (1012)
+...+ .++| ..+..+...++..++. |..|...+++.++..--.+++..+|..++.+|..|....
T Consensus 512 is~~d-y~sV-----~~rsNcy~~l~~~ia~----~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~------ 575 (1133)
T KOG1943|consen 512 ISTID-YFSV-----TNRSNCYLDLCVSIAE----FSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE------ 575 (1133)
T ss_pred hhhcc-hhhh-----hhhhhHHHHHhHHHHh----hhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh------
Confidence 00000 0011 1112222233333333 556677777776554223568889999999998876543
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 001791 751 GLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1012)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 799 (1012)
++ .+.+..+|+++.... ..+...+.....+.++++..+
T Consensus 576 -------pk---~~a~~~L~~lld~~l-s~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 576 -------PK---YLADYVLPPLLDSTL-SKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred -------HH---hhcccchhhhhhhhc-CCChHHhhhhHHHHHHHHHHh
Confidence 22 233345677766543 335566666666777766543
No 50
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=99.25 E-value=2.9e-06 Score=94.31 Aligned_cols=234 Identities=17% Similarity=0.152 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHH-HHcCCCCCCCHHHHHH
Q 001791 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLA-IEKGLAPGRNESYVKQ 763 (1012)
Q Consensus 685 ~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~ 763 (1012)
.+..+.|+..+.++.+.+-..-.|-...+...++..++ ++++...+++++.-+..-+... ..+| +.....-|.++
T Consensus 788 ~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~-~a~~riLykQR 863 (1030)
T KOG1967|consen 788 LDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKG-HAEPRILYKQR 863 (1030)
T ss_pred cchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcC---CccccchHHHhhHhhhccChHHhhhcc-ccchhHHHHHH
Confidence 44567788889998887654444545556666666665 4577777888776555432211 1122 22233578899
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHh
Q 001791 764 LSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEES 843 (1012)
Q Consensus 764 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~ 843 (1012)
++..++|.+.+.+... ........+.+|.+++.........+.++.+++.+.+.|.- +|
T Consensus 864 fF~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~--------------~D------ 922 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSM--------------PD------ 922 (1030)
T ss_pred HHHhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCC--------------Cc------
Confidence 9999999999998743 23345567888999988654322223445555555544422 11
Q ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCC---HHHHHHHHHHHHHHHHHhhh-hhHh
Q 001791 844 ELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKT---AEERRIAICIFDDVAEQCRE-AALK 919 (1012)
Q Consensus 844 ~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~---~~~~~~~~~~l~~l~~~~~~-~~~~ 919 (1012)
-.++-.+..++..+....+.-...|+.+++|.++..-. +.+ ..+|..|+.+++.+.+..+. .+.+
T Consensus 923 ----------~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~-~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 923 ----------VIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSS-DNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred ----------cchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCC-CCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 12444688899999999988888999999999987643 333 56899999999999996665 4678
Q ss_pred hhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhc
Q 001791 920 YYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFG 954 (1012)
Q Consensus 920 ~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~ 954 (1012)
|-++++.++.+.|.|+..-||..|..+=+.+...+
T Consensus 992 fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 992 FRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred ccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999887765543
No 51
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.24 E-value=2.4e-09 Score=113.02 Aligned_cols=256 Identities=18% Similarity=0.203 Sum_probs=163.7
Q ss_pred hHhHHHhhHHHHHHHHHHHHhcCC--------------hHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCC-
Q 001791 221 DRDRFQDLLPLMMRTLTESLNNGN--------------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES- 285 (1012)
Q Consensus 221 ~~~~~~~~~~~ll~~l~~~l~~~~--------------~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~- 285 (1012)
-++.|.+.+..+++.+...+.-++ +.++..+++++....++|.+.+.++++.++...++.+..-.
T Consensus 72 LPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~ 151 (370)
T PF08506_consen 72 LPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQ 151 (370)
T ss_dssp --HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--S
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677777777776665543211 13556788999999999999999999999988888774322
Q ss_pred --cchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HHHhhccCCCCc-cccCCCCC-----CccccCCcchh
Q 001791 286 --LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LMSMLLDIEDDP-LWHSAETE-----DEDAGESSNYS 356 (1012)
Q Consensus 286 --~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~l~~~~~~~-~~~~~~~~-----~ed~~~~~~~~ 356 (1012)
..+.+...+++++..+++..... ..+ ..++.++.++.. ++..|+-.++|. -|.+++.| -|..+..+.++
T Consensus 152 ~~~~D~lv~~al~FL~~v~~~~~~~-~lf-~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~ 229 (370)
T PF08506_consen 152 QPKYDILVSKALQFLSSVAESPHHK-NLF-ENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRR 229 (370)
T ss_dssp SGGGHHHHHHHHHHHHHHHTSHHHH-TTT--SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHH
T ss_pred cccccHHHHHHHHHHHHHHcchhHH-HHh-CCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHH
Confidence 23456677899999887742111 011 125677777664 456666543332 34433221 11123457788
Q ss_pred hHHHHHHHHHHHcCCCcchHHHHHHHHHhhC------CCChhHHHHHHHHHHHHHhhcHH------------HHHHhHHH
Q 001791 357 VGQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK------------VMVKNLEQ 418 (1012)
Q Consensus 357 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~------------~~~~~l~~ 418 (1012)
+|..++..+++..+ +.+.+.+...++..++ +.+|+.+.+|+..++.++..... .+..++.+
T Consensus 230 AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~ 308 (370)
T PF08506_consen 230 AACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQ 308 (370)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHH
Confidence 99999999998886 5666777777777665 47899999999999999875421 12233332
Q ss_pred -HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHH
Q 001791 419 -VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1012)
Q Consensus 419 -i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1012)
++|.+. .-.+.+|.+|..|++.+..+-..+++ +.+..++|.+...|.+ ++..|+.-|+.++
T Consensus 309 ~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~-~~~vv~tyAA~~i 370 (370)
T PF08506_consen 309 HVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQS-SSYVVHTYAAIAI 370 (370)
T ss_dssp HTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTS-S-HHHHHHHHHHH
T ss_pred HhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCC-CCcchhhhhhhhC
Confidence 234444 22366899999999999998877653 5688899999999999 8888888777664
No 52
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.2e-06 Score=93.96 Aligned_cols=439 Identities=16% Similarity=0.201 Sum_probs=263.5
Q ss_pred HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhh
Q 001791 98 LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1012)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1012)
++..--+.+.+-+-|.+ ++..+.-.+.-+++.|+.. .--+++.|.+.+++++.++.+|+-|..|...+....++.
T Consensus 102 qdvllLltNslknDL~s-~nq~vVglAL~alg~i~s~----EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNS-SNQYVVGLALCALGNICSP----EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred hHHHHHHHHHHHhhccC-CCeeehHHHHHHhhccCCH----HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 44455555555566665 4555555555566666543 355789999999999999999999999999998877764
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC---ChHHHHHHHHH
Q 001791 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG---NEATAQEALEL 254 (1012)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~---~~~~~~~~~~~ 254 (1012)
+..+++.+.+.|.+. +..|..+++..+..++..- .+....|..+.+.++..+.+..... +.++.
T Consensus 177 ----~e~f~~~~~~lL~ek-~hGVL~~~l~l~~e~c~~~--~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~------ 243 (866)
T KOG1062|consen 177 ----VEHFVIAFRKLLCEK-HHGVLIAGLHLITELCKIS--PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVH------ 243 (866)
T ss_pred ----HHHhhHHHHHHHhhc-CCceeeeHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCcc------
Confidence 566667777778886 8899999999999998763 2245667788888888887765432 11110
Q ss_pred HHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCC
Q 001791 255 LIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIE 334 (1012)
Q Consensus 255 L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~ 334 (1012)
..-.|+++--+=.+++++... +++....-.++|..++.. .. ...+.-..++-.
T Consensus 244 ---------gi~dPFLQi~iLrlLriLGq~--d~daSd~M~DiLaqvatn---td----sskN~GnAILYE--------- 296 (866)
T KOG1062|consen 244 ---------GISDPFLQIRILRLLRILGQN--DADASDLMNDILAQVATN---TD----SSKNAGNAILYE--------- 296 (866)
T ss_pred ---------CCCchHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhc---cc----ccccchhHHHHH---------
Confidence 011122221111223333322 233333334455555542 10 011111222222
Q ss_pred CCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 001791 335 DDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1012)
Q Consensus 335 ~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1012)
|+..+....+........++.+..++.+.+-..|+.|+..|...+...+.....
T Consensus 297 --------------------------~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqr 350 (866)
T KOG1062|consen 297 --------------------------CVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQR 350 (866)
T ss_pred --------------------------HHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHH
Confidence 222222222223344445566667788888899999999999998877654444
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc
Q 001791 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1012)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1012)
| -..++.+|+|++..+|+.|+...-.+.. ...+..++..++..|.. .++..+.....-+..+.+.+.+
T Consensus 351 H----r~tIleCL~DpD~SIkrralELs~~lvn-------~~Nv~~mv~eLl~fL~~-~d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 351 H----RSTILECLKDPDVSIKRRALELSYALVN-------ESNVRVMVKELLEFLES-SDEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred H----HHHHHHHhcCCcHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHhcCC
Confidence 4 3566778999999999999998887765 34567788888888877 6788999999999999998886
Q ss_pred ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH-hhhhHHHHHHHhhccccccchhhHHHHHHHH
Q 001791 495 EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECIS 573 (1012)
Q Consensus 495 ~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~ 573 (1012)
+. ..|++.++.. +......|+..+...+-.++.....+...|. ..+...+..... .+.+...+..-+..|+|
T Consensus 419 ~k-~W~idtml~V----l~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~--~~is~e~l~qVa~W~IG 491 (866)
T KOG1062|consen 419 DK-RWHIDTMLKV----LKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTL--LDISQEPLLQVASWCIG 491 (866)
T ss_pred cc-hhHHHHHHHH----HHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhh--hhhhhhhHHHHHHHHhh
Confidence 53 4666655444 4444455666555555555443311112221 122222222110 11223345566788888
Q ss_pred HHHhhh--C---hhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 001791 574 LVGMAV--G---KDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1012)
Q Consensus 574 ~l~~~~--~---~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 627 (1012)
-.+.-+ | .+-....-..++..+.++.... ..+...+.+++.++..+...++..
T Consensus 492 EYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~-~s~~~tk~yal~Al~KLSsr~~s~ 549 (866)
T KOG1062|consen 492 EYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSH-SSDSTTKGYALTALLKLSSRFHSS 549 (866)
T ss_pred hhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhhcccc
Confidence 877322 1 1112222345666666644322 233456778888877777666554
No 53
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.17 E-value=3.1e-07 Score=103.16 Aligned_cols=426 Identities=16% Similarity=0.195 Sum_probs=254.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCc--hHH-HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDP--DSL-TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p--~~~-~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1012)
.....++.+.+. +.+-++...++....+.| +.+ ...++..+.++ +.+.-..+..+|++++... . +.+
T Consensus 4 ~~~~~l~~l~~~--~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~-----~--~~~ 73 (503)
T PF10508_consen 4 WINELLEELSSK--AERLEALPELKTELSSSPFLERLPEPVLFDCLNTS-NREQVELICDILKRLLSAL-----S--PDS 73 (503)
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc-ChHHHHHHHHHHHHHHhcc-----C--HHH
Confidence 345566666554 444445555543222122 111 12355555544 4444467778889987653 1 233
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC---CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh
Q 001791 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN---GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD 176 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~---~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~ 176 (1012)
....+...+..+|.+ +++.||..++..++.+++..-..- .-+++++.+..++.+++..+...|..++..++.....
T Consensus 74 l~~~~~~~L~~gL~h-~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 74 LLPQYQPFLQRGLTH-PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 367788899999997 899999999999998876432111 3367899999999999999999999999999875321
Q ss_pred hcccc-HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH-HHHHHHHHHHHhcCChHHHHHHHHH
Q 001791 177 TLTPH-LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNGNEATAQEALEL 254 (1012)
Q Consensus 177 ~~~~~-~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~ 254 (1012)
+... -+.+.+.+.+.+... +..+|..++.++..+...- .+.+.... ..+++.+...+.++|.-++..++++
T Consensus 153 -~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S-----~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 153 -LEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHS-----PEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred -HHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcC-----HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 1111 112256666666665 7788988999888887642 22222111 1366666667777777889999999
Q ss_pred HHHHHccchHHHHHhHH--HHHHHHHHhhccCCcchHH----HHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHH
Q 001791 255 LIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGT----RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMS 328 (1012)
Q Consensus 255 L~~l~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~v----r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 328 (1012)
|..++... .-. .|+. .+++.+...+.+...++.. -...+.++..++.. .|.. .....+.++..++.
T Consensus 226 l~~La~~~-~g~-~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~---~~~~---v~~~~p~~~~~l~~ 297 (503)
T PF10508_consen 226 LSELAETP-HGL-QYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV---SPQE---VLELYPAFLERLFS 297 (503)
T ss_pred HHHHHcCh-hHH-HHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc---ChHH---HHHHHHHHHHHHHH
Confidence 99999833 222 2222 4666666665444333311 12233555555542 2211 11122333333333
Q ss_pred hhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCc--------chHHHHHHHHHhhCCCChhHHHHHHHH
Q 001791 329 MLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNT--------IVPVASEQLPAYLAAPEWQKHHAALIA 400 (1012)
Q Consensus 329 ~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~--------~~~~~~~~l~~~l~~~~~~~r~aal~~ 400 (1012)
++... +...+..|.++++.++....+.. ....++..+.....+.....|..++.+
T Consensus 298 ~~~s~-----------------d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~a 360 (503)
T PF10508_consen 298 MLESQ-----------------DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHA 360 (503)
T ss_pred HhCCC-----------------ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 32211 22345567777777765432222 233455556666667777899999999
Q ss_pred HHHHHhhcHH----HHHHhHHHH--------HH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001791 401 LAQIAEGCAK----VMVKNLEQV--------LS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1012)
Q Consensus 401 l~~l~~~~~~----~~~~~l~~i--------~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1012)
++.+.....+ .+....... .. .+...++.|-|.+|.++...+..++.+-.....-...+.++..++.
T Consensus 361 l~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 361 LASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 9999654321 111111111 11 6677788899999999999999998754221112345667777777
Q ss_pred hcCCCCChHHHHHHHHHHHHHhhcC
Q 001791 468 AMDDFQNPRVQAHAASAVLNFSENC 492 (1012)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1012)
.-.+ .++..+..=...+..+....
T Consensus 441 r~~E-~~K~~ke~K~~ii~~l~~~~ 464 (503)
T PF10508_consen 441 RSTE-TTKEGKEAKYDIIKALAKSS 464 (503)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHhcc
Confidence 7666 66666666666666666443
No 54
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.2e-07 Score=102.93 Aligned_cols=440 Identities=15% Similarity=0.178 Sum_probs=278.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHH---HHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSL---TLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~---~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
.=+..+..+..+.|.++++-..-+|-++.+.+|+-. +.++-.-| .++++-+|-.|...|..+- .+.+.+
T Consensus 71 ~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLSIntfQk~L-~DpN~LiRasALRvlSsIR-------vp~IaP 142 (968)
T KOG1060|consen 71 LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLSINTFQKAL-KDPNQLIRASALRVLSSIR-------VPMIAP 142 (968)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeeeHHHHHhhh-cCCcHHHHHHHHHHHHhcc-------hhhHHH
Confidence 345667788888899999999999988887677532 12222211 3788899998888887742 121111
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc
Q 001791 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1012)
|.-.-++....++.+-||+.+|.+|-.+.+.+. ++.++++..+-.++.+.++.+.-.|..++..+|-+--+-+
T Consensus 143 -----I~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~--e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLI 215 (968)
T KOG1060|consen 143 -----IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP--EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLI 215 (968)
T ss_pred -----HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh--hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHh
Confidence 111122222235899999999999999887643 4667999999999999999999999999999887644444
Q ss_pred cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh-hcCcc-----------------------hHhHHHhhHHHHHH
Q 001791 179 TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC-LTSSA-----------------------DRDRFQDLLPLMMR 234 (1012)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~-~~~~~-----------------------~~~~~~~~~~~ll~ 234 (1012)
.+++..+.+++.+.=.. =+...+..|...++. +.++. .+.....=+..+++
T Consensus 216 HknyrklC~ll~dvdeW-----gQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~ 290 (968)
T KOG1060|consen 216 HKNYRKLCRLLPDVDEW-----GQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQ 290 (968)
T ss_pred hHHHHHHHhhccchhhh-----hHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHH
Confidence 44555555555432111 133455666655543 11110 01011122335666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhc
Q 001791 235 TLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1012)
Q Consensus 235 ~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 314 (1012)
....++++.++.+..++++++..++... .+..|+..+++++.. ...++...+..+..++.. .|. .
T Consensus 291 stkpLl~S~n~sVVmA~aql~y~lAP~~------~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~---~~~---l 355 (968)
T KOG1060|consen 291 STKPLLQSRNPSVVMAVAQLFYHLAPKN------QVTKIAKALVRLLRS---NREVQYVVLQNIATISIK---RPT---L 355 (968)
T ss_pred hccHHHhcCCcHHHHHHHhHHHhhCCHH------HHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhc---chh---h
Confidence 6677778889999999999988776433 234455555555532 345666677777777762 332 2
Q ss_pred chhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHH
Q 001791 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1012)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r 394 (1012)
+.||++.++-. .. |+ ......-.++|..|+. ..-++.+++.++-++++.+...-
T Consensus 356 F~P~lKsFfv~-------ss-Dp--------------~~vk~lKleiLs~La~----esni~~ILrE~q~YI~s~d~~fa 409 (968)
T KOG1060|consen 356 FEPHLKSFFVR-------SS-DP--------------TQVKILKLEILSNLAN----ESNISEILRELQTYIKSSDRSFA 409 (968)
T ss_pred hhhhhhceEee-------cC-CH--------------HHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHhcCchhHH
Confidence 33444432211 11 10 0011122345555553 44577888999999999888777
Q ss_pred HHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCC
Q 001791 395 HAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQN 474 (1012)
Q Consensus 395 ~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 474 (1012)
.+++.++|..+..... .-+..+..++..++..+..|-..+...|..+.+.-+.. ...++..+.+.+....-
T Consensus 410 a~aV~AiGrCA~~~~s----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~-----h~~ii~~La~lldti~v 480 (968)
T KOG1060|consen 410 AAAVKAIGRCASRIGS----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE-----HLEILFQLARLLDTILV 480 (968)
T ss_pred HHHHHHHHHHHHhhCc----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHhhhhhh
Confidence 7788888887765543 23445566667777778889999999999988754432 22345555555543233
Q ss_pred hHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001791 475 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
+.-|...+|.++..++... ...++++..+.+.+.+....+|-+++.....+.....+
T Consensus 481 p~ARA~IiWLige~~e~vp-----ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~ 537 (968)
T KOG1060|consen 481 PAARAGIIWLIGEYCEIVP-----RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID 537 (968)
T ss_pred hhhhceeeeeehhhhhhcc-----hhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh
Confidence 5566666777787776533 56688999999999999999999888877776544443
No 55
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.13 E-value=1.4e-08 Score=122.78 Aligned_cols=275 Identities=17% Similarity=0.182 Sum_probs=186.7
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHh
Q 001791 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRD 223 (1012)
Q Consensus 144 ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~ 223 (1012)
-++.|.+.+.++++.+|..|+..|+.+.. +..++.|...|.|+ ++.||..|+.+|..+......
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~~~~----- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDG-AAAVRRAAAEGLRELVEVLPP----- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCc-----
Confidence 45677788888999999999999886632 34566777778887 899999999998877653210
Q ss_pred HHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 224 RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 224 ~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
.+.+...++++++.+|..++..|..+....+ . .++..+ .+.+..+|..|+..+..+-.
T Consensus 686 ---------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~----~l~~~L--~D~d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 686 ---------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------A----LFAAAL--GDPDHRVRIEAVRALVSVDD 743 (897)
T ss_pred ---------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H----HHHHHh--cCCCHHHHHHHHHHHhcccC
Confidence 1133344567788999999988887642211 1 122333 35577889888776665421
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHH
Q 001791 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1012)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 383 (1012)
+ +. +...+.+ + +...+..+...|..+...- +...+.+.
T Consensus 744 -----~----------~~----l~~~l~D----~-------------~~~VR~~aa~aL~~~~~~~------~~~~~~L~ 781 (897)
T PRK13800 744 -----V----------ES----VAGAATD----E-------------NREVRIAVAKGLATLGAGG------APAGDAVR 781 (897)
T ss_pred -----c----------HH----HHHHhcC----C-------------CHHHHHHHHHHHHHhcccc------chhHHHHH
Confidence 0 11 1122111 0 2235555666666554211 12245666
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001791 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1012)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1012)
.+++|+++.+|.+|+.+|+.+... +.+.+.+...+.|+++.||.+|.++|+.+.. +..++
T Consensus 782 ~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~ 841 (897)
T PRK13800 782 ALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVP 841 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHH
Confidence 788899999999999999987432 1233557778899999999999999987542 24557
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 001791 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALAS 529 (1012)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~ 529 (1012)
.|...|+| +++.||..|..+|..+ . --+...+.|...+++.+..||..+..+|..
T Consensus 842 ~L~~~L~D-~~~~VR~~A~~aL~~~----~------~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 842 ALVEALTD-PHLDVRKAAVLALTRW----P------GDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHhcC-CCHHHHHHHHHHHhcc----C------CCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 88888889 8999999999999885 1 113456777788889999999999888763
No 56
>PRK09687 putative lyase; Provisional
Probab=99.13 E-value=1.3e-08 Score=104.04 Aligned_cols=251 Identities=15% Similarity=0.104 Sum_probs=167.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHH
Q 001791 188 VFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR 267 (1012)
Q Consensus 188 ~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~ 267 (1012)
.+.+.|.+. +..||..|+.+|..+-. . .++..+..+++++++.+|..+...|+.+......
T Consensus 27 ~L~~~L~d~-d~~vR~~A~~aL~~~~~-------~--------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 27 ELFRLLDDH-NSLKRISSIRVLQLRGG-------Q--------DVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred HHHHHHhCC-CHHHHHHHHHHHHhcCc-------c--------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 445556787 89999999999875432 1 2333445556788999999999999998643211
Q ss_pred HhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCc
Q 001791 268 RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1012)
Q Consensus 268 ~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~e 347 (1012)
....++.+...+. .+.++.||..+...+..++.. .+ .....++..+...+.+.
T Consensus 88 --~~~a~~~L~~l~~-~D~d~~VR~~A~~aLG~~~~~---~~-------~~~~~a~~~l~~~~~D~-------------- 140 (280)
T PRK09687 88 --QDNVFNILNNLAL-EDKSACVRASAINATGHRCKK---NP-------LYSPKIVEQSQITAFDK-------------- 140 (280)
T ss_pred --hHHHHHHHHHHHh-cCCCHHHHHHHHHHHhccccc---cc-------ccchHHHHHHHHHhhCC--------------
Confidence 1233344433322 456788999999988887642 11 01122333332222111
Q ss_pred cccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC
Q 001791 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1012)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1012)
++..+..+...|..+ + -+..++.+...+.+++|.+|..|..+||.+... -+..++.+...+
T Consensus 141 ---~~~VR~~a~~aLg~~----~----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L 201 (280)
T PRK09687 141 ---STNVRFAVAFALSVI----N----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAML 201 (280)
T ss_pred ---CHHHHHHHHHHHhcc----C----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHh
Confidence 222444444444322 2 245667778888999999999999999988322 235778888899
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHH
Q 001791 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 507 (1012)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~ 507 (1012)
.|+++.||..|.++|+.+.. +..+|.|++.+++ ++ ++..++.+|+.+-. +..++.
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~-~~--~~~~a~~ALg~ig~-----------~~a~p~ 256 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKK-GT--VGDLIIEAAGELGD-----------KTLLPV 256 (280)
T ss_pred cCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcC-Cc--hHHHHHHHHHhcCC-----------HhHHHH
Confidence 99999999999999998542 3678899999988 44 67788888888732 245677
Q ss_pred HHHHhh-cCChhHHHHHHHHHH
Q 001791 508 LLVLLQ-NGKQMVQEGALTALA 528 (1012)
Q Consensus 508 l~~~l~-~~~~~v~~~a~~~l~ 528 (1012)
|.++++ +++..++..+..++.
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHHh
Confidence 777775 667888888887765
No 57
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.4e-06 Score=94.91 Aligned_cols=393 Identities=13% Similarity=0.150 Sum_probs=224.1
Q ss_pred HHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHH
Q 001791 107 MLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (1012)
Q Consensus 107 ~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 186 (1012)
.|.+.|.+..+...+.+.-++++.|++- ..-.+++|.+.....+.+.++|+....-|-..++.-++...-. +
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALLS----I 110 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALLS----I 110 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceeee----H
Confidence 3556666655666677777777877763 3567889999998888888888776655555555433321111 3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHH
Q 001791 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1012)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~ 266 (1012)
..+.+.|.|+ ++-+|..|++++..+=- .-+.|.++-++.++..+..+-+|..|..++..+-+..++.-
T Consensus 111 ntfQk~L~Dp-N~LiRasALRvlSsIRv-----------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 111 NTFQKALKDP-NQLIRASALRVLSSIRV-----------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred HHHHhhhcCC-cHHHHHHHHHHHHhcch-----------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 4566778887 89999999888865432 22456677778888888888899998888888877665543
Q ss_pred HHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhh-----ccchhhh---cchhhHHH-HHHHHHHhhccCCCCc
Q 001791 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARE-----RAPGMMR---KLPQFINR-LFAILMSMLLDIEDDP 337 (1012)
Q Consensus 267 ~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~-----~~~~~~~---~~~~~~~~-l~~~l~~~l~~~~~~~ 337 (1012)
. .+.+++..++ . |.++.|...|.-.+..+|-..- +.-..++ ++.++-+- ++..+.++....--+|
T Consensus 179 ~-qL~e~I~~LL---a--D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 179 D-QLEEVIKKLL---A--DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred H-HHHHHHHHHh---c--CCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 3 4445555443 2 3345555555555555554210 0000000 11111111 2333333322111111
Q ss_pred cccCCCCCCccccCCcchhhHHHHHHHHHHHcCC---CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 001791 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVK 414 (1012)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~ 414 (1012)
|..+.. -++.+ +..-. -+.....-++ +.-...+++....++.|.+..+-.|++.++-.++...
T Consensus 253 -~~~~~~-~e~n~----~~~~~--~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~------ 318 (968)
T KOG1060|consen 253 -TVVDSS-LEDNG----RSCNL--KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN------ 318 (968)
T ss_pred -cccccc-cccCc----ccccc--cccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH------
Confidence 110000 00000 00000 0000000011 2334456666667777888888777777777766432
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-----------------------------HhhhhhhhHHHH
Q 001791 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-----------------------------QNQFHPQVLPAL 465 (1012)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----------------------------~~~~~~~il~~l 465 (1012)
....|+..++..|. +++.+|...+..|..++..-+.-+ .......|++.+
T Consensus 319 ~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 319 QVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 33445666666554 456667777766666665332211 012345666666
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhh
Q 001791 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAV 545 (1012)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i 545 (1012)
...+++ .+..+...|..+|+....... ..-++.+..|+.++.+.+..|-..+...|..+...-+..-..++.++
T Consensus 398 q~YI~s-~d~~faa~aV~AiGrCA~~~~-----sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~L 471 (968)
T KOG1060|consen 398 QTYIKS-SDRSFAAAAVKAIGRCASRIG-----SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQL 471 (968)
T ss_pred HHHHhc-CchhHHHHHHHHHHHHHHhhC-----chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 666766 455677777788887765544 45577889999999988888888888888888876654333333333
Q ss_pred h
Q 001791 546 M 546 (1012)
Q Consensus 546 l 546 (1012)
.
T Consensus 472 a 472 (968)
T KOG1060|consen 472 A 472 (968)
T ss_pred H
Confidence 3
No 58
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.09 E-value=3.7e-08 Score=119.19 Aligned_cols=273 Identities=18% Similarity=0.196 Sum_probs=150.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC
Q 001791 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE 138 (1012)
Q Consensus 59 ~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~ 138 (1012)
..|+..| ++.++.+|+.|+..|... + +++ ....|.+.|.+ ++..||..++..+..+...
T Consensus 624 ~~L~~~L-~D~d~~VR~~Av~~L~~~--------~---~~~----~~~~L~~aL~D-~d~~VR~~Aa~aL~~l~~~---- 682 (897)
T PRK13800 624 AELAPYL-ADPDPGVRRTAVAVLTET--------T---PPG----FGPALVAALGD-GAAAVRRAAAEGLRELVEV---- 682 (897)
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHhhh--------c---chh----HHHHHHHHHcC-CCHHHHHHHHHHHHHHHhc----
Confidence 4455554 356667777777766663 1 111 23345555543 6666777666666655321
Q ss_pred CCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001791 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1012)
Q Consensus 139 ~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1012)
++. .+.+.+.++++++.+|..++..|+.+... .. ..+...|.|+ ++.||..|+.+|..+-.
T Consensus 683 --~~~-~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-------~~----~~l~~~L~D~-d~~VR~~Av~aL~~~~~---- 743 (897)
T PRK13800 683 --LPP-APALRDHLGSPDPVVRAAALDVLRALRAG-------DA----ALFAAALGDP-DHRVRIEAVRALVSVDD---- 743 (897)
T ss_pred --cCc-hHHHHHHhcCCCHHHHHHHHHHHHhhccC-------CH----HHHHHHhcCC-CHHHHHHHHHHHhcccC----
Confidence 111 23444555666667777776666654311 01 1234455665 77777777777665310
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHH
Q 001791 219 SADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFV 298 (1012)
Q Consensus 219 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l 298 (1012)
. +.+...+.++++.+|..+...|..+....+.. ++.+...+ .|.++.+|..++..|
T Consensus 744 ---~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~--------~~~L~~ll--~D~d~~VR~aA~~aL 799 (897)
T PRK13800 744 ---V-----------ESVAGAATDENREVRIAVAKGLATLGAGGAPA--------GDAVRALT--GDPDPLVRAAALAAL 799 (897)
T ss_pred ---c-----------HHHHHHhcCCCHHHHHHHHHHHHHhccccchh--------HHHHHHHh--cCCCHHHHHHHHHHH
Confidence 0 01223455667777777777777664432211 22222333 234566777766665
Q ss_pred HHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHH
Q 001791 299 ITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVA 378 (1012)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~ 378 (1012)
..+... ..+.+.+...+. ++ ++..+..+...|..+. .. ..
T Consensus 800 g~~g~~---------------~~~~~~l~~aL~----d~-------------d~~VR~~Aa~aL~~l~----~~----~a 839 (897)
T PRK13800 800 AELGCP---------------PDDVAAATAALR----AS-------------AWQVRQGAARALAGAA----AD----VA 839 (897)
T ss_pred HhcCCc---------------chhHHHHHHHhc----CC-------------ChHHHHHHHHHHHhcc----cc----ch
Confidence 554321 001111222221 11 2224455555554432 12 23
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001791 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ 444 (1012)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 444 (1012)
++.+...++|++|.+|.+|+.+|+.+. + -+...+.+...++|+++.||..|..+|..
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~~-~--------~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRWP-G--------DPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhccC-C--------CHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 456667888999999999999999861 1 12356677788999999999999998863
No 59
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=0.00013 Score=86.07 Aligned_cols=220 Identities=23% Similarity=0.351 Sum_probs=150.4
Q ss_pred HHHHhcC-CChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHH
Q 001791 27 LISHLMS-TSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLK 105 (1012)
Q Consensus 27 ll~~~~s-~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~ 105 (1012)
+...... ++++.|.+|.+.+.+++. .|+.+ .....++..+.++.+|++|..+|-+.++.+ |..+|.+.+.++|
T Consensus 16 vv~~~~~~~s~~~r~eA~~~l~~lke-~~~~~-~~~~~iL~~s~~~~~k~f~Lqlle~vik~~----W~~~~~~~r~glk 89 (1041)
T KOG2020|consen 16 VVVTLNPEGSNEERGEAQQILEELKE-EPDSW-LQVYLILKLSTNPILKYFALQLLENVIKFR----WNSLPVEERVGLK 89 (1041)
T ss_pred HHHHhCcccchHHHHHHHHHHHHHHh-CcchH-HHHHHHHhccCCchhheeeHHHHHHHHHHh----cccCCccccHHHH
Confidence 3333444 578999999999999999 78766 456667777789999999999999999998 9999999999999
Q ss_pred HHHHHHHhhc--------chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh-
Q 001791 106 SMLLQSIQLE--------SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD- 176 (1012)
Q Consensus 106 ~~ll~~l~~~--------~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~- 176 (1012)
+..+...... ....++..++..+-.|++.++| +.||+++|.+.+.... +...++.++.++..+.+..-.
T Consensus 90 ~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp-~~wp~~i~dl~~~s~~-s~~~~el~m~Il~lLsEdvf~~ 167 (1041)
T KOG2020|consen 90 NYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWP-AIWPTFIPDLAQSSKT-SETVCELSMIILLLLSEEVFDF 167 (1041)
T ss_pred HHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHH-hhcchhhhhHHHHhhc-CcccchHHHHHHHHHHHHHhcc
Confidence 9999876531 2456888999999999999999 7999999999998874 345677788888877776321
Q ss_pred ---hc------------cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh
Q 001791 177 ---TL------------TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN 241 (1012)
Q Consensus 177 ---~~------------~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~ 241 (1012)
.+ ...+..+..++....... +..+-.+++..+..+..+++ ....+..+ ++..+.....
T Consensus 168 ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a-~~~~~~atl~tl~~fl~wip---~~~I~~tn---~l~~~l~~~l 240 (1041)
T KOG2020|consen 168 SSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKA-NSELLSATLETLLRFLEWIP---LGYIFETN---ILELLLNKFL 240 (1041)
T ss_pred cchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhccc---HHHHHHhh---hHHHHHHhcc
Confidence 10 112233333333333333 33366666666666666653 11222221 1222222221
Q ss_pred cCChHHHHHHHHHHHHHHccc
Q 001791 242 NGNEATAQEALELLIELAGTE 262 (1012)
Q Consensus 242 ~~~~~~~~~~~~~L~~l~~~~ 262 (1012)
+.+..|..+++||..++...
T Consensus 241 -n~~~~r~~al~CL~ei~s~~ 260 (1041)
T KOG2020|consen 241 -NAPELRNNALSCLTELLSRK 260 (1041)
T ss_pred -chHHHHHHHHHHHHHHHhcc
Confidence 25667777777777776653
No 60
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.07 E-value=2e-08 Score=97.72 Aligned_cols=360 Identities=15% Similarity=0.113 Sum_probs=209.9
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc----chHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhHhhhccc
Q 001791 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGW----PELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTP 180 (1012)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~----~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1012)
..+.+.|.+ .+-..+..+..-+..+.+.+.....- ...+|.+.+.+.+. ..-..-.|.-++..++.....+..-
T Consensus 74 p~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 74 PQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 445555555 34444445544555554443221111 22456666666433 3334445677777777765443211
Q ss_pred -cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCC--hHHHHHHHHHHHH
Q 001791 181 -HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGN--EATAQEALELLIE 257 (1012)
Q Consensus 181 -~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~--~~~~~~~~~~L~~ 257 (1012)
.-..-+|+|.+.|.++ +..||..++.+|++++..-+. .++.+.+ ...++.+...+.+.- -.....+...|+.
T Consensus 153 Vvd~~AVPlfiqlL~s~-~~~V~eQavWALGNiAGDS~~--~RD~vL~--~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 153 VVDAGAVPLFIQLLSST-EDDVREQAVWALGNIAGDSEG--CRDYVLQ--CGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred EEeCCchHHHHHHHcCc-hHHHHHHHHHHhccccCCchh--HHHHHHh--cCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 1234567888888887 899999999999999874211 1111111 123334444443333 3455667778887
Q ss_pred HHccc-hHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCC
Q 001791 258 LAGTE-PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1012)
Q Consensus 258 l~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1012)
+++.. |.--...+...++.+.+++.. .++++-..|+..++.+... |.. -+..++.
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys--~D~evlvDA~WAiSYlsDg----~~E------~i~avld------------ 283 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYS--RDPEVLVDACWAISYLSDG----PNE------KIQAVLD------------ 283 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHhccC----cHH------HHHHHHh------------
Confidence 77533 221122344445555554422 2455555566666555541 210 0000000
Q ss_pred ccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001791 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1012)
Q Consensus 337 ~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1012)
. .+.+.+.+++.+++-++..-|+..+|.++.+....-.-.+
T Consensus 284 --------------------------------~-------g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI 324 (526)
T COG5064 284 --------------------------------V-------GIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVII 324 (526)
T ss_pred --------------------------------c-------CCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehhe
Confidence 0 0122344555666666666777788888776543111111
Q ss_pred -HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc-
Q 001791 417 -EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP- 494 (1012)
Q Consensus 417 -~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~- 494 (1012)
-..++.+...|+++...+|..|||+|+++...-...+..-.-..++|.|++.+.. ....++..||+++.+...++..
T Consensus 325 ~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~-ae~k~kKEACWAisNatsgg~~~ 403 (526)
T COG5064 325 NCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS-AEYKIKKEACWAISNATSGGLNR 403 (526)
T ss_pred ecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHHHHHhhhccccCC
Confidence 1245667777899999999999999999987655555333445788999999987 7788999999999999876531
Q ss_pred ccccCcH--HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 495 EILTPYL--DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 495 ~~l~~~~--~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
..+..|+ +..+..|..+|.-.+.++-+.++.|+.++.....
T Consensus 404 PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 404 PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 1222343 2456777778877777788888999988876544
No 61
>PRK09687 putative lyase; Provisional
Probab=99.07 E-value=3e-08 Score=101.29 Aligned_cols=254 Identities=14% Similarity=0.146 Sum_probs=170.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhH
Q 001791 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDR 224 (1012)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 224 (1012)
++.|...+.+++..+|..+...|+.+.. +.+++.+...+.++ ++.+|..|+.+|+.+-..- ..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~------~~ 87 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSK-NPIERDIGADILSQLGMAK------RC 87 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCc------cc
Confidence 5667777788999999999999886643 34555666667787 8999999999999864311 00
Q ss_pred HHhhHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 225 FQDLLPLMMRTLTES-LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 225 ~~~~~~~ll~~l~~~-l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
.. ..++.+... ++++++.+|..++..|+.+....... ...+++.+.... .+.+..+|..+...+..+..
T Consensus 88 ~~----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~--~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 88 QD----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITA--FDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred hH----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHh--hCCCHHHHHHHHHHHhccCC
Confidence 11 223333333 46788999999999999885433211 122333333333 34477899888766643321
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHH
Q 001791 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLP 383 (1012)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~ 383 (1012)
+..++.++..+.+. ++..+..+...|+.+. .-.+.+.+.+.
T Consensus 158 ----------------~~ai~~L~~~L~d~-----------------~~~VR~~A~~aLg~~~------~~~~~~~~~L~ 198 (280)
T PRK09687 158 ----------------EAAIPLLINLLKDP-----------------NGDVRNWAAFALNSNK------YDNPDIREAFV 198 (280)
T ss_pred ----------------HHHHHHHHHHhcCC-----------------CHHHHHHHHHHHhcCC------CCCHHHHHHHH
Confidence 33455555555421 1225556666666551 12345677788
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001791 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1012)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1012)
..+.+.+|.+|..|+.+||.+.. +..+|.|++.+.+++ +|..++.++|.+.. +..+|
T Consensus 199 ~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-----------~~a~p 255 (280)
T PRK09687 199 AMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD-----------KTLLP 255 (280)
T ss_pred HHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-----------HhHHH
Confidence 88899999999999999998532 357888888888866 67788888888764 25778
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHH
Q 001791 464 ALAGAMDDFQNPRVQAHAASAVLN 487 (1012)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~ 487 (1012)
.|...++..+++.|+..+..++..
T Consensus 256 ~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 256 VLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhc
Confidence 888888633789999999888764
No 62
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=99.05 E-value=9e-07 Score=97.45 Aligned_cols=382 Identities=15% Similarity=0.163 Sum_probs=232.7
Q ss_pred HHHHHhhcCCCH---HHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcc--
Q 001791 146 PFMFQCVSSDSV---KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA-- 220 (1012)
Q Consensus 146 ~~l~~~~~~~~~---~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~-- 220 (1012)
|.++..+.+.+. ...+..+.++..++..-+ -+......++..+........+......++.++..++.......
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~ 80 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQF 80 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccccc
Confidence 556666655443 455667777777765421 11112334444444444433355666788888888887654322
Q ss_pred -hHhHHHh--hHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHccchHHH-HHhHHHHHHHHHHh-----hc-cCCcc
Q 001791 221 -DRDRFQD--LLPLMMRTLTESLNNGN---EATAQEALELLIELAGTEPRFL-RRQLVDVVGSMLQI-----AE-AESLE 287 (1012)
Q Consensus 221 -~~~~~~~--~~~~ll~~l~~~l~~~~---~~~~~~~~~~L~~l~~~~~~~~-~~~~~~i~~~l~~~-----~~-~~~~~ 287 (1012)
+...+.+ ++|.+++.......... +.+...+..++..++...+..- ...+..++...+.. +. .....
T Consensus 81 ~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~ 160 (415)
T PF12460_consen 81 EDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTI 160 (415)
T ss_pred chHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcccccc
Confidence 2233333 66666666655443222 3444445555555554443222 12233333333200 00 00000
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHH
Q 001791 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1012)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (1012)
.......+-.+..+... .+... .++ ....++..++.+.....+ ...+..+.+++..+..
T Consensus 161 ~~~~~~~~~l~~~il~~---l~~~~-~~~-~~~~ll~~l~~~~~~~~~----------------~~~~~~~~~~la~LvN 219 (415)
T PF12460_consen 161 SEQQSRLVILFSAILCS---LRKDV-SLP-DLEELLQSLLNLALSSED----------------EFSRLAALQLLASLVN 219 (415)
T ss_pred ccccccHHHHHHHHHHc---CCccc-Ccc-CHHHHHHHHHHHHHcCCC----------------hHHHHHHHHHHHHHHc
Confidence 00111222233333331 11000 111 333455555554433221 1245667788888888
Q ss_pred HcCCCcchHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001791 368 ALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1012)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1012)
.++.++.+..++..+.... .+.....|..++..+..+..+.--...+....++..++..+.| +.+...+..+++-+.
T Consensus 220 K~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~ 297 (415)
T PF12460_consen 220 KWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILL 297 (415)
T ss_pred CCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHh
Confidence 7765555566666665555 4556777778888887777664322234456677778888877 777888888888877
Q ss_pred hhhch------------hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhc
Q 001791 447 TDLGP------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN 514 (1012)
Q Consensus 447 ~~~~~------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~ 514 (1012)
..... -+...++..++|.+++...+ .+...+.....||..++++.+...+.++++.++|.+++.+..
T Consensus 298 ~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~-~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~ 376 (415)
T PF12460_consen 298 SDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKE-ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSL 376 (415)
T ss_pred cCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhh-cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 65321 12245788999999999888 555688889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHH
Q 001791 515 GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1012)
Q Consensus 515 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~ 552 (1012)
++..++..++.++..+....++.+.+|++.++|.|.+.
T Consensus 377 ~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 377 PDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988888899999999988753
No 63
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.04 E-value=3.8e-05 Score=88.39 Aligned_cols=143 Identities=18% Similarity=0.171 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh---------cchHhHHHHHHHHHHHHHhcccCC
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL---------ESAKSISKKLCDTVSELASNILPE 138 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~---------~~~~~vr~~~~~~l~~i~~~~~~~ 138 (1012)
++..++||.|++.++.+.+.+ ...++-+..+.+...++..+.- +....||.+.+++++.+.++..+
T Consensus 88 ~~~we~rhg~~i~lrei~~~h----~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~- 162 (1549)
T KOG0392|consen 88 EPQWEIRHGAAIALREILKTH----GDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYLKHMDE- 162 (1549)
T ss_pred CchhhhhcCcchhhhhHHHHh----cchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhh-
Confidence 678899999999999999887 4555555566665555554331 13347999999999999998766
Q ss_pred CCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001791 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1012)
Q Consensus 139 ~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 216 (1012)
....+.+..+.++...++|+.|++++..+.+......+.+...++.+++.+.++|.|. +..+|..|.+.+.......
T Consensus 163 s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds-~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 163 SLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDS-DDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHHHHHhhhhhHHH
Confidence 5777888889999988899999999999987776444444456788899999999998 8999999999988877764
No 64
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.02 E-value=4e-09 Score=86.81 Aligned_cols=94 Identities=26% Similarity=0.350 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC
Q 001791 393 KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1012)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1012)
.|.+++.+++.++.+.+..+..+++.|++.++.++.|++++||..|+.++.++++..+..+ -++++++++.+.+.+.|
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D- 79 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSAD- 79 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-
Confidence 5899999999999999999999999999999999999999999999999999999998888 57999999999999999
Q ss_pred CChHHHHHHHHHHHHHh
Q 001791 473 QNPRVQAHAASAVLNFS 489 (1012)
Q Consensus 473 ~~~~v~~~a~~al~~l~ 489 (1012)
+++.||.+| ..|.+++
T Consensus 80 ~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLL 95 (97)
T ss_pred CchhHHHHH-HHHHHHh
Confidence 999998776 5555554
No 65
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=2.3e-06 Score=94.00 Aligned_cols=474 Identities=16% Similarity=0.160 Sum_probs=282.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHH
Q 001791 24 FETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1012)
Q Consensus 24 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~ 101 (1012)
+..++.++...|-+.++-...+|..+.+.+|+..+...-.++.+ ++++.+|.+|...+..+-. +...
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-----------~~i~ 119 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV-----------DKIT 119 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee-----------hHHH
Confidence 44455566667888999999999988887897665544455544 7889999999888776522 3355
Q ss_pred HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh-hccc
Q 001791 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLTP 180 (1012)
Q Consensus 102 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~ 180 (1012)
+++..-+...+.+ .++.+|+.++.+++.+...+.....-..+++.|..++.++++.+...|+.++..+.+.-++ ....
T Consensus 120 ey~~~Pl~~~l~d-~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 120 EYLCDPLLKCLKD-DDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHHHhccC-CChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 6777888888987 7899999999999988765433335567889999999999999999999999999987653 2222
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
....++..+++.+..- +.--+...++++. .+.++. ..... .+++.+...++..+..+...+.+.+..++.
T Consensus 199 l~~~~~~~lL~al~ec-~EW~qi~IL~~l~---~y~p~d--~~ea~----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 199 LNPQLINKLLEALNEC-TEWGQIFILDCLA---EYVPKD--SREAE----DICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred ccHHHHHHHHHHHHHh-hhhhHHHHHHHHH---hcCCCC--chhHH----HHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 3344444555544443 2233444444444 333221 11111 355566666666677777777777777665
Q ss_pred cchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCcccc
Q 001791 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1012)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1012)
.........+..+-+.+..++.. .+++...++.-+.-+... .|. +...-+..++ +. -.||-+
T Consensus 269 ~~~~~~~~~~~K~~~pl~tlls~---~~e~qyvaLrNi~lil~~---~p~-------~~~~~~~~Ff---~k-ynDPiY- 330 (734)
T KOG1061|consen 269 YLKQVNELLFKKVAPPLVTLLSS---ESEIQYVALRNINLILQK---RPE-------ILKVEIKVFF---CK-YNDPIY- 330 (734)
T ss_pred HHHHHHHHHHHHhcccceeeecc---cchhhHHHHhhHHHHHHh---ChH-------HHHhHhHeee---ee-cCCchh-
Confidence 44442223333333333333321 224444444444433331 222 1111111111 00 011100
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001791 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1012)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1012)
....-.+++..++. +..+..++..+.+....-+..--..++.++|.++....+. ...+
T Consensus 331 -------------vK~eKleil~~la~----~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv 388 (734)
T KOG1061|consen 331 -------------VKLEKLEILIELAN----DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCV 388 (734)
T ss_pred -------------hHHHHHHHHHHHhh----HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhH
Confidence 11112344544442 3445557777777777777777778899999988765542 5677
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCc
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1012)
+.++.++.-....|...+...+..+....+. ..+.+++.+...+.+-.+|..|.+-.|.+++..+..+ -
T Consensus 389 ~~lLell~~~~~yvvqE~~vvi~dilRkyP~-----~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~------~ 457 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEAIVVIRDILRKYPN-----KYESVVAILCENLDSLQEPEAKAALIWILGEYAERIE------N 457 (734)
T ss_pred HHHHHHHhhcccceeeehhHHHHhhhhcCCC-----chhhhhhhhcccccccCChHHHHHHHHHHhhhhhccC------c
Confidence 7777777755555666666666666655543 2356666766666554568888888888888766554 3
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 001791 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1012)
Q Consensus 501 ~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1012)
.+.+++.+++.+.+....|+...+.+.-.+....+..- ..++..++..-. .+.+...+|.+++.-+..+.
T Consensus 458 a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~t----q~~l~~vL~~~~--~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 458 ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTET----QELLQGVLPLAT--ADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccH----HHHHHHHHhhhh--ccccChhhhhhHHHHHHHhh
Confidence 35566677776666666676666555544433332222 223322222221 22344578998888877775
No 66
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.94 E-value=5.5e-08 Score=98.29 Aligned_cols=191 Identities=20% Similarity=0.316 Sum_probs=137.5
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhc-----HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001791 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGC-----AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1012)
Q Consensus 378 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-----~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1012)
+...+...-.+.+|..|..|+..+..++.+. .+.+...+..++..+...+.|....|...|+.+++.++..++..
T Consensus 8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~ 87 (228)
T PF12348_consen 8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH 87 (228)
T ss_dssp S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence 4444544456789999999999999998876 23445566677789999999999999999999999999999998
Q ss_pred HHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHH-HHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI-VSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~i-l~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
+ .++.+.++|.|++.+.+ ++..++..|..+|..++..++ +.+.+ .+.+.....+.++.+|..++.++..+.
T Consensus 88 ~-~~~~~~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 88 F-EPYADILLPPLLKKLGD-SKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp G-HHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 8 78999999999999999 888999999999999998765 22334 667777788889999999999999998
Q ss_pred HHhH---hhhHh--hHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhC
Q 001791 532 DSSQ---EHFQK--YYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1012)
Q Consensus 532 ~~~~---~~~~~--~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1012)
...+ ..+.. +++.+.+.+...+. +.+..+|..|-.++..+...+|
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~----D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKLLS----DADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHHHT----SS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHccchHhhhcccchHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHHHCC
Confidence 8877 33433 34677777777764 3566799999999999887777
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.2e-05 Score=86.38 Aligned_cols=383 Identities=13% Similarity=0.121 Sum_probs=203.5
Q ss_pred CCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHh
Q 001791 96 LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1012)
Q Consensus 96 l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~ 175 (1012)
.++|....+...+-+.+++ +++.+|+.++.|..++.+.. | ..-..+++.....+.+.+..+-.+++..+..+|+..+
T Consensus 135 ~s~EmardlapeVe~Ll~~-~~~~irKKA~Lca~r~irK~-P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 135 CSPEMARDLAPEVERLLQH-RDPYIRKKAALCAVRFIRKV-P-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred CCHHHhHHhhHHHHHHHhC-CCHHHHHHHHHHHHHHHHcC-c-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 3677777777777777876 89999999999999998863 3 2444556666677777777788888888888888754
Q ss_pred hh---ccccHHHHHHHHHHhhcCC----------CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHH------------
Q 001791 176 DT---LTPHLKHLHAVFLNCLTNS----------NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLP------------ 230 (1012)
Q Consensus 176 ~~---~~~~~~~l~~~l~~~l~~~----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~------------ 230 (1012)
+. +....+.++.++.+..... ++|-++...++.|.-+.....+ ..+.+.+++.
T Consensus 212 ~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d--aSd~M~DiLaqvatntdsskN~ 289 (866)
T KOG1062|consen 212 DALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD--ASDLMNDILAQVATNTDSSKNA 289 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHhcccccccc
Confidence 43 3334555555555543321 1455666666666655443211 1111111111
Q ss_pred -----------------------HHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcc
Q 001791 231 -----------------------LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLE 287 (1012)
Q Consensus 231 -----------------------~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 287 (1012)
.-++.+...+.+.+.++|.-++..|...+...+.....|-..|++.+ +|+|
T Consensus 290 GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL------~DpD 363 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECL------KDPD 363 (866)
T ss_pred hhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHh------cCCc
Confidence 11222233333334444444444444555555555666666666644 5678
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHH
Q 001791 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAI 367 (1012)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~ 367 (1012)
..+|..|+++...+... . -+..++..++..+...+++ .+.-...-+..+++
T Consensus 364 ~SIkrralELs~~lvn~----~--------Nv~~mv~eLl~fL~~~d~~-----------------~k~~~as~I~~laE 414 (866)
T KOG1062|consen 364 VSIKRRALELSYALVNE----S--------NVRVMVKELLEFLESSDED-----------------FKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHHHHhcc----c--------cHHHHHHHHHHHHHhccHH-----------------HHHHHHHHHHHHHH
Confidence 99999999999998873 1 2233444444444333110 11112233444555
Q ss_pred HcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhc-HHHHHHhHHHHHHHHHh--hCCCCChhHHHHHHHHHHH
Q 001791 368 ALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC-AKVMVKNLEQVLSMVLN--SFRDPHPRVRWAAINAIGQ 444 (1012)
Q Consensus 368 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~-~~~~~~~l~~i~~~l~~--~l~d~~~~vr~~a~~~l~~ 444 (1012)
.+.++.. ..++.+...+......+|.-....+-.+..+. .+.-......+...+.. .+.-+.+.+...|.||||.
T Consensus 415 kfaP~k~--W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGE 492 (866)
T KOG1062|consen 415 KFAPDKR--WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGE 492 (866)
T ss_pred hcCCcch--hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhh
Confidence 5544322 22333444444433344444444444433332 32111111112111111 1222345557889999999
Q ss_pred hhhhhchh-----HHhhhhhhhHHHHHhhcCCC-CChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChh
Q 001791 445 LSTDLGPD-----LQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQM 518 (1012)
Q Consensus 445 l~~~~~~~-----~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~ 518 (1012)
++..+-.. .....-..++..+.+.+... .+..++.-|..|+..+...+... .+.+=..+.....+-+..
T Consensus 493 YGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-----~~ri~~lI~~~~~s~~~e 567 (866)
T KOG1062|consen 493 YGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-----SERIKQLISSYKSSLDTE 567 (866)
T ss_pred hhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-----HHHHHHHHHHhcccccHH
Confidence 98654221 00112234444554444321 24677888888888887666522 333333334444444556
Q ss_pred HHHHHHH
Q 001791 519 VQEGALT 525 (1012)
Q Consensus 519 v~~~a~~ 525 (1012)
++.++.+
T Consensus 568 lQQRa~E 574 (866)
T KOG1062|consen 568 LQQRAVE 574 (866)
T ss_pred HHHHHHH
Confidence 6666655
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.90 E-value=0.00051 Score=81.26 Aligned_cols=114 Identities=13% Similarity=0.147 Sum_probs=87.9
Q ss_pred hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001791 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1012)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 534 (1012)
...++.++..++..+.. +...+|..|..||..+++.-+ .. ---+.+-..+..-+.+....||++|+..+|..+...
T Consensus 811 ~~sfD~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp-~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~ 886 (1692)
T KOG1020|consen 811 SQSFDPYLKLILSVLGE-NAIALRTKALKCLSMIVEADP-SV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI 886 (1692)
T ss_pred HHhhHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcCh-Hh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc
Confidence 45677888888888888 889999999999999987654 22 233556667777778888999999999999998888
Q ss_pred HhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhC
Q 001791 535 QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1012)
Q Consensus 535 ~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1012)
++....|++.+...+.+ ....+|.+++..+..+....+
T Consensus 887 ~e~~~qyY~~i~erIlD--------tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 887 PELIFQYYDQIIERILD--------TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHHHHHHHHHHhhcCC--------CchhHHHHHHHHHHHHHHhCC
Confidence 87777788777654432 234588999988888876554
No 69
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.8e-05 Score=85.75 Aligned_cols=254 Identities=13% Similarity=0.232 Sum_probs=167.9
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccc
Q 001791 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1012)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~ 262 (1012)
..+.+=+...|+++ .+-+|+.|+-.++.++..+ ++.+...+|. +.+-+.++|+.+..+|+.+++++++..
T Consensus 143 RDLa~Dv~tLL~ss-kpYvRKkAIl~lykvFLkY-----PeAlr~~Fpr----L~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 143 RDLADDVFTLLNSS-KPYVRKKAILLLYKVFLKY-----PEALRPCFPR----LVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred HHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhh-----hHhHhhhHHH----HHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 34444445556776 8899999999999988765 4555655554 455677899999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCC
Q 001791 263 PRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1012)
Q Consensus 263 ~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1012)
|..+-+..+.++..+.. .+ +.-+-...+.++..+... .| ....++++.+.+.+....
T Consensus 213 PknyL~LAP~ffklltt----Ss-NNWmLIKiiKLF~aLtpl---EP-------RLgKKLieplt~li~sT~-------- 269 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVT----SS-NNWVLIKLLKLFAALTPL---EP-------RLGKKLIEPITELMESTV-------- 269 (877)
T ss_pred CcccccccHHHHHHHhc----cC-CCeehHHHHHHHhhcccc---Cc-------hhhhhhhhHHHHHHHhhH--------
Confidence 98777666666665432 22 222333445555555542 23 244556666665543210
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHH---cCC---CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001791 343 ETEDEDAGESSNYSVGQECLDRLAIA---LGG---NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1012)
Q Consensus 343 ~~~~ed~~~~~~~~~a~~~l~~l~~~---~~~---~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1012)
.-....+|+..+... .|. .......+..+..++.++|...|+-++.+++.++...+..+..|.
T Consensus 270 -----------AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k 338 (877)
T KOG1059|consen 270 -----------AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK 338 (877)
T ss_pred -----------HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH
Confidence 111223343333221 111 133455677788889999999999999999999998886555444
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhc
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1012)
..++++|.|.++.+|-.|+..+-.+.. .+.+..|+..|+..+........|...+.-+-.+|..
T Consensus 339 ----dlIlrcL~DkD~SIRlrALdLl~gmVs-------kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 339 ----DLILRCLDDKDESIRLRALDLLYGMVS-------KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred ----HHHHHHhccCCchhHHHHHHHHHHHhh-------hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 567788999999999999998877654 4567788888888776523335566555555555543
No 70
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.88 E-value=1.7e-07 Score=106.57 Aligned_cols=303 Identities=17% Similarity=0.227 Sum_probs=197.1
Q ss_pred HHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCc--c
Q 001791 144 LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS--A 220 (1012)
Q Consensus 144 ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~--~ 220 (1012)
+++.+..++++= ..+.|..|+..+..+...+.++. .++.++|.++.++.|+ ...||..|+.++..++....+. .
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~LDRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KLDRVLPYFVHLLMDS-EADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HHhhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccCCCcc
Confidence 455555555542 34667789999998888876653 4789999999999998 9999999999999998876431 2
Q ss_pred hHhHHHhhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Q 001791 221 DRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1012)
Q Consensus 221 ~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~ 299 (1012)
+...|.+ .+++.|...+.+ ...-+|.....+|..++...+.++.--. .+=. -...+ +.+.+
T Consensus 500 daniF~e---YlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q-~~~~--~g~~n--~~nse---------- 561 (1431)
T KOG1240|consen 500 DANIFPE---YLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQ-ELRQ--AGMLN--DPNSE---------- 561 (1431)
T ss_pred cchhhHh---hhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHH-HHHh--ccccc--Ccccc----------
Confidence 3333444 567777777776 4556788888999988876665443211 0000 00011 11111
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHH
Q 001791 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1012)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 379 (1012)
...+ +............+-......+.+. ..-.+++..+.+..|+..+|...--..++
T Consensus 562 t~~~-----~~~~~~~~~L~~~V~~~v~sLlsd~-----------------~~~Vkr~Lle~i~~LC~FFGk~ksND~iL 619 (1431)
T KOG1240|consen 562 TAPE-----QNYNTELQALHHTVEQMVSSLLSDS-----------------PPIVKRALLESIIPLCVFFGKEKSNDVIL 619 (1431)
T ss_pred cccc-----cccchHHHHHHHHHHHHHHHHHcCC-----------------chHHHHHHHHHHHHHHHHhhhcccccchH
Confidence 0000 0000111112222222222222221 12245566667888999999777778899
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001791 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1012)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1012)
+++..++++.+|..|-+-+..+..++-..+.. ..-+-++|.+.++|.|..+.|-..|+.++..+++.- .+...+.-
T Consensus 620 shLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~--ll~K~~v~ 695 (1431)
T KOG1240|consen 620 SHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG--LLRKPAVK 695 (1431)
T ss_pred HHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc--ccchHHHH
Confidence 99999999999999988777766555443321 112446799999999999999999999999998742 22234555
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc
Q 001791 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1012)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1012)
+++..++-.|-. +|.-+|.++|..|..+...++.
T Consensus 696 ~i~~~v~PlL~h-PN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 696 DILQDVLPLLCH-PNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred HHHHhhhhheeC-chHHHHHHHHHHHHHHHhhhhh
Confidence 566666656666 8999999999999999877653
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2.8e-05 Score=84.25 Aligned_cols=227 Identities=11% Similarity=0.149 Sum_probs=146.4
Q ss_pred CCCHHHHHHHHHHHHHhcccCC--------CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC
Q 001791 68 SPHPEARAMAAVLLRKLLTRDD--------SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN 139 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~--------~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~ 139 (1012)
..+..+-.+.-..+++-++... ...-.-.+++....+..-++..|++ .-+-+|..+..++..++-. +| .
T Consensus 101 ~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~s-skpYvRKkAIl~lykvFLk-YP-e 177 (877)
T KOG1059|consen 101 HDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNS-SKPYVRKKAILLLYKVFLK-YP-E 177 (877)
T ss_pred cCCccHHHHHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHh-hh-H
Confidence 3455566666666776665431 0001123677777888899999997 7889999999898888765 45 3
Q ss_pred CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhc------------C--CCChHHHH--
Q 001791 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLT------------N--SNNPDVKI-- 203 (1012)
Q Consensus 140 ~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~------------~--~~~~~vr~-- 203 (1012)
..-.-+|.|.+-+.++++.+..+|..++..+++.-|..+.+..+.++.++...-+ . +-.|..++
T Consensus 178 Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKL 257 (877)
T KOG1059|consen 178 ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKL 257 (877)
T ss_pred hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhh
Confidence 4455688999999999999999999999999987766543333333333221100 0 00112211
Q ss_pred -----------HHHHHHHHHHHhhcCc----chHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHH
Q 001791 204 -----------AALNAVINFIQCLTSS----ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1012)
Q Consensus 204 -----------~a~~~l~~~~~~~~~~----~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 268 (1012)
.|...++.++...-.. ..++ -...+...++-+...+.+.|++.+..++.++..++..+|.....
T Consensus 258 ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa 336 (877)
T KOG1059|consen 258 IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA 336 (877)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH
Confidence 2333333333221000 0000 01123355666666777889999999999999999999988887
Q ss_pred hHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHh
Q 001791 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1012)
Q Consensus 269 ~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1012)
|-+-|+..+ .|.++.+|..|++++..++..
T Consensus 337 ~kdlIlrcL------~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 337 HKDLILRCL------DDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred hHHHHHHHh------ccCCchhHHHHHHHHHHHhhh
Confidence 766555544 456889999999999999873
No 72
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.85 E-value=7e-06 Score=90.47 Aligned_cols=391 Identities=17% Similarity=0.167 Sum_probs=229.9
Q ss_pred HHHHhhCCCCCh---hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCccc-
Q 001791 421 SMVLNSFRDPHP---RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI- 496 (1012)
Q Consensus 421 ~~l~~~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~- 496 (1012)
|.++..|.|..+ .-...++.+++.++..- .+.......++..+........+......++.++..+++....+.
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSP--QILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 566777766654 45667778888877532 221233334444444444322345666778888888887654322
Q ss_pred ---ccCcHHH-HHHHHHHHhhcC-----C--hhHHHHHHHHHHHHHHHhHhh-hHhhHhhhhHHHHH-----HHhhcccc
Q 001791 497 ---LTPYLDG-IVSKLLVLLQNG-----K--QMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKA-----ILVNATDK 559 (1012)
Q Consensus 497 ---l~~~~~~-il~~l~~~l~~~-----~--~~v~~~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~-----~l~~~~~~ 559 (1012)
...|... +++.+....-.. + ..+-..+...++.++...+.. -...++.+...+.. .+... ..
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~-~~ 158 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPS-SS 158 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCcc-cc
Confidence 3345553 777777654322 1 233333344444444444321 12233333333320 00000 00
Q ss_pred ccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHH
Q 001791 560 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1012)
Q Consensus 560 ~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1012)
....-..+.+-.+..+..++.++.-.|...++++-++.+... ..+...+..+.++++.++..+..+= .+..++..+
T Consensus 159 ~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~--~~~~~~~~~~~~~la~LvNK~~~~~--~l~~~l~~~ 234 (415)
T PF12460_consen 159 TISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALS--SEDEFSRLAALQLLASLVNKWPDDD--DLDEFLDSL 234 (415)
T ss_pred ccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCChh--hHHHHHHHH
Confidence 000112233444555556666666656666777777764321 1235577788888888887753321 444444444
Q ss_pred HHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhcc
Q 001791 640 LQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVP 719 (1012)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~ 719 (1012)
....... .+ ...+..++..+.++.+.+-..-.|...++++.++.
T Consensus 235 ~~~~~~~-----------------~~-------------------~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~ 278 (415)
T PF12460_consen 235 LQSISSS-----------------ED-------------------SELRPQALEILIWITKALVMRGHPLATELLDKLLE 278 (415)
T ss_pred Hhhhccc-----------------CC-------------------cchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4433000 00 01134567788899988766667888888888888
Q ss_pred ccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHh
Q 001791 720 LLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1012)
Q Consensus 720 ~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 799 (1012)
.++ ++++...++++++-++.-......+........=|.++++..++|.+++..+...+ ......+.+|..+++.+
T Consensus 279 lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k~~yL~ALs~ll~~v 354 (415)
T PF12460_consen 279 LLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIKSNYLTALSHLLKNV 354 (415)
T ss_pred HhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhC
Confidence 887 47889999999998887643333333233445678899999999999998876543 25667788999999876
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhH
Q 001791 800 GPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFF 879 (1012)
Q Consensus 800 g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 879 (1012)
...+...+++.+++.+.+.|.- .+..++..+.+++..++...++.+.+|+
T Consensus 355 P~~vl~~~l~~LlPLLlqsL~~------------------------------~~~~v~~s~L~tL~~~l~~~~~~i~~hl 404 (415)
T PF12460_consen 355 PKSVLLPELPTLLPLLLQSLSL------------------------------PDADVLLSSLETLKMILEEAPELISEHL 404 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHhCC------------------------------CCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 5433334455555555544411 1123677899999999999988899999
Q ss_pred HHHHHhHhh
Q 001791 880 DELSSYLTP 888 (1012)
Q Consensus 880 ~~ll~~l~~ 888 (1012)
..++|.++.
T Consensus 405 ~sLI~~LL~ 413 (415)
T PF12460_consen 405 SSLIPRLLK 413 (415)
T ss_pred HHHHHHHHh
Confidence 999988875
No 73
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.84 E-value=0.00085 Score=79.51 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=111.1
Q ss_pred hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001791 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1012)
Q Consensus 375 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1012)
+...+..+...+..+...+|--|+.+++.+++..+... ..+.+-..+-..+.|.+..||.+|+..+|++.-..+.
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e--- 888 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE--- 888 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH---
Confidence 34456666667778889999999999999998776422 2355667888899999999999999999999876643
Q ss_pred hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
+..++...+.+.+.| +...||.+++..+..++...+ + + +-...++..++.-.++....+++-+...+-.+.
T Consensus 889 --~~~qyY~~i~erIlD-tgvsVRKRvIKIlrdic~e~p-d-f-~~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 889 --LIFQYYDQIIERILD-TGVSVRKRVIKILRDICEETP-D-F-SKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred --HHHHHHHHHHhhcCC-CchhHHHHHHHHHHHHHHhCC-C-h-hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 445666666777778 888999999999999998776 2 2 445556666666666666667777777776654
No 74
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.81 E-value=0.00037 Score=73.68 Aligned_cols=409 Identities=15% Similarity=0.129 Sum_probs=217.9
Q ss_pred HHHHHHHHHHhhc--chHhHHHHHHHHHHHHHhcc-cCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhcc
Q 001791 103 SLKSMLLQSIQLE--SAKSISKKLCDTVSELASNI-LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1012)
Q Consensus 103 ~i~~~ll~~l~~~--~~~~vr~~~~~~l~~i~~~~-~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1012)
.+.....+.++.. ....-|+.+...+..+...+ +|+..-.+++=.+..++++.++-.|+....++..+.....+.
T Consensus 22 t~~qd~~~sfn~Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv-- 99 (898)
T COG5240 22 TLLQDMNESFNKSPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDV-- 99 (898)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhh--
Confidence 3444555566542 23344555555555554322 333444567888889999999988887776666655432222
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 001791 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1012)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~ 259 (1012)
--....+++-++.+.+..+|-.|++.|..++..- .. +.+-..+.+..-++.+.++..++-.-..+.
T Consensus 100 ---lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~----tv-------~~~er~l~~a~Vs~~~a~~saalv~aYhLl 165 (898)
T COG5240 100 ---LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGE----TV-------YDFERYLNQAFVSTSMARRSAALVVAYHLL 165 (898)
T ss_pred ---hHHHHHHHHhhccCCccccccHHHHHHHHhcCcc----hh-------hhHHHHhhhhccccchhhhhhHHHHhhhhc
Confidence 2223344544555433478888888877766531 11 222233334444555555555443222222
Q ss_pred ccchHHHHHhHHHHHHHHHHhhcc----------CCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHh
Q 001791 260 GTEPRFLRRQLVDVVGSMLQIAEA----------ESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSM 329 (1012)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 329 (1012)
-..........++.-+..+..... +....-....|+.+++.+-++.+ + ..-+++..+...
T Consensus 166 p~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk----m------a~lklv~hf~~n 235 (898)
T COG5240 166 PNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK----M------AQLKLVEHFRGN 235 (898)
T ss_pred cccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH----H------HHHHHHHHhhcc
Confidence 222222222222222222221111 11112234456666666554310 0 111222222111
Q ss_pred hccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcC-CCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhc
Q 001791 330 LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG-GNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGC 408 (1012)
Q Consensus 330 l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~ 408 (1012)
.. .....+...++......+. ..+.+..+.|++..++++.-..+...+..++..++...
T Consensus 236 ~s--------------------mknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n 295 (898)
T COG5240 236 AS--------------------MKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN 295 (898)
T ss_pred cc--------------------cccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc
Confidence 10 0001111122222222221 13566778899999998866666666666666655432
Q ss_pred -HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHH
Q 001791 409 -AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLN 487 (1012)
Q Consensus 409 -~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~ 487 (1012)
++ ..+...+..+...|+.+....|.+|++.|.+++...+..+ ...=+.+-..++| .|. .-+..|+..
T Consensus 296 v~~---~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-----~vcN~evEsLIsd-~Nr---~IstyAITt 363 (898)
T COG5240 296 VGS---QFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-----SVCNKEVESLISD-ENR---TISTYAITT 363 (898)
T ss_pred cCH---HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-----eecChhHHHHhhc-ccc---cchHHHHHH
Confidence 22 4566777888888888999999999999999998765433 1122233334445 443 455677777
Q ss_pred HhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHH
Q 001791 488 FSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAK 567 (1012)
Q Consensus 488 l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~ 567 (1012)
+++.... .-++.++..+...+.+-+...+.-++.++.+++..++.....| +.+|.+.+.+ +.....+..
T Consensus 364 LLKTGt~----e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~----l~FL~~~L~~---eGg~eFK~~ 432 (898)
T COG5240 364 LLKTGTE----ETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSY----LDFLGSSLLQ---EGGLEFKKY 432 (898)
T ss_pred HHHcCch----hhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHH----HHHHHHHHHh---cccchHHHH
Confidence 7775543 3456677777777776666667778888888887777654444 4445555433 233456777
Q ss_pred HHHHHHHHHhhhC
Q 001791 568 SMECISLVGMAVG 580 (1012)
Q Consensus 568 a~~~l~~l~~~~~ 580 (1012)
++++++.+....+
T Consensus 433 ~Vdaisd~~~~~p 445 (898)
T COG5240 433 MVDAISDAMENDP 445 (898)
T ss_pred HHHHHHHHHhhCc
Confidence 7777776654443
No 75
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.77 E-value=5.6e-05 Score=79.61 Aligned_cols=289 Identities=16% Similarity=0.157 Sum_probs=179.3
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
.+.++.|++..-+++. ...|...+.+++..+.... .-.+.+...++.+...+.++....|..|+++|.+++.
T Consensus 261 ~~~q~rpfL~~wls~k-~emV~lE~Ar~v~~~~~~n-------v~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam 332 (898)
T COG5240 261 ALLQLRPFLNSWLSDK-FEMVFLEAARAVCALSEEN-------VGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAM 332 (898)
T ss_pred HHHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHHhc-------cCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence 3566677777777775 6678888888877766542 1123455677788888888888899999999999999
Q ss_pred cchHHHH---HhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCc
Q 001791 261 TEPRFLR---RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDP 337 (1012)
Q Consensus 261 ~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 337 (1012)
.+|.... +.+..++. +.+..+...|+ .++.++ . ....+..++..+...+.+..|+
T Consensus 333 ~~P~kv~vcN~evEsLIs---------d~Nr~IstyAI---TtLLKT---G------t~e~idrLv~~I~sfvhD~SD~- 390 (898)
T COG5240 333 KYPQKVSVCNKEVESLIS---------DENRTISTYAI---TTLLKT---G------TEETIDRLVNLIPSFVHDMSDG- 390 (898)
T ss_pred hCCceeeecChhHHHHhh---------cccccchHHHH---HHHHHc---C------chhhHHHHHHHHHHHHHhhccC-
Confidence 8886542 22222221 33444544444 455553 1 1224455555555554444321
Q ss_pred cccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhH
Q 001791 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1012)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1012)
-...+.+.+..|+..++.+ ...++.++...+.+ ...+-+.+++.++..+.+..++.-..-+
T Consensus 391 ----------------FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraL 452 (898)
T COG5240 391 ----------------FKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERAL 452 (898)
T ss_pred ----------------ceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHH
Confidence 2346778888999888733 34466666655544 5678888889999988887765433334
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
..++.+ +.|.. --..+...|+-+.+..+..- ...|...++..++ - .|..||.+|..||..+.-+.+..
T Consensus 453 e~LC~f----IEDce--y~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----L-EN~ivRsaAv~aLskf~ln~~d~ 521 (898)
T COG5240 453 EVLCTF----IEDCE--YHQITVRILGILGREGPRAKTPGKYVRHIYNRLI----L-ENNIVRSAAVQALSKFALNISDV 521 (898)
T ss_pred HHHHHH----Hhhcc--hhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----H-hhhHHHHHHHHHHHHhccCcccc
Confidence 444443 33321 12234445555554433211 0234444444443 3 57889999999999997766522
Q ss_pred cccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 496 ~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
-..+.+...+..++++.+..+|..|.-++..+-
T Consensus 522 ---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 ---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 123456667778999999999999988877664
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.74 E-value=4.2e-06 Score=95.63 Aligned_cols=300 Identities=18% Similarity=0.201 Sum_probs=189.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHH
Q 001791 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1012)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~ 266 (1012)
+++..+++.-...+.+..|+..+..+..+..+ ...++ .+++.+..++.++..++|..|++.|.+++....+.-
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d---e~~LD----RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDD---EVKLD----RVLPYFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcch---HHHHh----hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 33444443333457888999999999987642 22233 455566667778899999999999998875331110
Q ss_pred ---HHhH-HHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCC
Q 001791 267 ---RRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1012)
Q Consensus 267 ---~~~~-~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1012)
...+ .-+++.+-.+.. ......+|......+..+++. +- + |+..... +-. ....++++-...
T Consensus 498 ~~daniF~eYlfP~L~~l~~-d~~~~~vRiayAsnla~LA~t---A~---r----Fle~~q~-~~~--~g~~n~~nset~ 563 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLN-DSSAQIVRIAYASNLAQLAKT---AY---R----FLELTQE-LRQ--AGMLNDPNSETA 563 (1431)
T ss_pred cccchhhHhhhhhhhHhhhc-cCccceehhhHHhhHHHHHHH---HH---H----HHHHHHH-HHh--cccccCcccccc
Confidence 0011 112233322222 113456787777888888873 11 1 1111110 000 001111110000
Q ss_pred CCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001791 343 ETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1012)
Q Consensus 343 ~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1012)
. + ..+..-.. .+...+-..+..++.++...+|.+-+..++.++...+.. ..-+-|++.
T Consensus 564 ~-------~-~~~~~~~~------------~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLsh 621 (1431)
T KOG1240|consen 564 P-------E-QNYNTELQ------------ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSH 621 (1431)
T ss_pred c-------c-cccchHHH------------HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHH
Confidence 0 0 00111111 122233344556778888999999888877776554431 122447899
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH
Q 001791 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1012)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~ 502 (1012)
+...|+|.++.+|.+-+..|.-++-..+..- .-+-++|.+.+.|.| ..+.|...|+.++..+++..--+ .+++-
T Consensus 622 LiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs---~seyllPLl~Q~ltD-~EE~Viv~aL~~ls~Lik~~ll~--K~~v~ 695 (1431)
T KOG1240|consen 622 LITFLNDKDWRLRGAFFDSIVGVSIFVGWRS---VSEYLLPLLQQGLTD-GEEAVIVSALGSLSILIKLGLLR--KPAVK 695 (1431)
T ss_pred HHHHhcCccHHHHHHHHhhccceEEEEeeee---HHHHHHHHHHHhccC-cchhhHHHHHHHHHHHHHhcccc--hHHHH
Confidence 9999999999999999999988777766532 234578999999999 89999999999999999854322 37888
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 503 ~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
+|++....++-.++.-+|..++..|..++...+
T Consensus 696 ~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 696 DILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 899999999999999999999999988887766
No 77
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.71 E-value=5.1e-07 Score=89.04 Aligned_cols=382 Identities=14% Similarity=0.124 Sum_probs=227.4
Q ss_pred HHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhh-ccccHHHHHHHHHHhhcCCCC
Q 001791 120 ISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSNN 198 (1012)
Q Consensus 120 vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~ 198 (1012)
.++.++.+.+.+.....- ..-.+....++.++++.+.....++-..+|.++-..... +.-.+..+-+++.+.+.+ .
T Consensus 63 lqrsaalafAeitek~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd--~ 139 (550)
T KOG4224|consen 63 LQRSAALAFAEITEKGVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD--G 139 (550)
T ss_pred cchHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC--C
Confidence 334444444444433222 233445566667788888888888888999877665543 223455666677777776 5
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHH
Q 001791 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSML 278 (1012)
Q Consensus 199 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~ 278 (1012)
..+|..++.|+.+++.+.+......... -+..+..+.++.+..++..+...|..+...+...-.-.-..-++++.
T Consensus 140 vevqcnaVgCitnLaT~d~nk~kiA~sG-----aL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLV 214 (550)
T KOG4224|consen 140 VEVQCNAVGCITNLATFDSNKVKIARSG-----ALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLV 214 (550)
T ss_pred cEEEeeehhhhhhhhccccchhhhhhcc-----chhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhh
Confidence 6889999999999998743211111111 22223334456677888889998888765443211100012234444
Q ss_pred HhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhH
Q 001791 279 QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1012)
Q Consensus 279 ~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a 358 (1012)
..+ +..+.+++..+...+..++-.. ...+.+.+.-++++|.++..|.+.++ ...-.|
T Consensus 215 sll--~s~d~dvqyycttaisnIaVd~----~~Rk~Laqaep~lv~~Lv~Lmd~~s~-----------------kvkcqA 271 (550)
T KOG4224|consen 215 SLL--KSGDLDVQYYCTTAISNIAVDR----RARKILAQAEPKLVPALVDLMDDGSD-----------------KVKCQA 271 (550)
T ss_pred hhh--ccCChhHHHHHHHHhhhhhhhH----HHHHHHHhcccchHHHHHHHHhCCCh-----------------HHHHHH
Confidence 444 3456788988888888877531 11123444456788888887754321 112224
Q ss_pred HHHHHHHHHHc--CCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHH
Q 001791 359 QECLDRLAIAL--GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVR 435 (1012)
Q Consensus 359 ~~~l~~l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr 435 (1012)
+-.+..++.-- ..+-+-..-+|.+.++++++--....+.+.++..++-+......-.-..++..++..|. .++..++
T Consensus 272 ~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiq 351 (550)
T KOG4224|consen 272 GLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQ 351 (550)
T ss_pred HHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhh
Confidence 44455554211 00011122467777788888877788888888776654332100000123444556665 3466689
Q ss_pred HHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcH-HHHHHHHHHHhhc
Q 001791 436 WAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYL-DGIVSKLLVLLQN 514 (1012)
Q Consensus 436 ~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~-~~il~~l~~~l~~ 514 (1012)
..|..++-.++.........-.-...+|.+...+.| ....+|.....++..+.-+-... ..++ ..|++.|+..+.+
T Consensus 352 chAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD-~pvsvqseisac~a~Lal~d~~k--~~lld~gi~~iLIp~t~s 428 (550)
T KOG4224|consen 352 CHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD-GPVSVQSEISACIAQLALNDNDK--EALLDSGIIPILIPWTGS 428 (550)
T ss_pred hhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc-CChhHHHHHHHHHHHHHhccccH--HHHhhcCCcceeecccCc
Confidence 999988888876443332122334678888888888 66778877777777665322110 1122 2467778888888
Q ss_pred CChhHHHHHHHHHHHHHHHhH
Q 001791 515 GKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 515 ~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
.+.++|..+..++++++....
T Consensus 429 ~s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 429 ESEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred cchhhcccHHHHHHhhhhhhH
Confidence 889999999999999987655
No 78
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=4.8e-06 Score=82.42 Aligned_cols=389 Identities=16% Similarity=0.167 Sum_probs=227.6
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchH---HHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhcc-ccHH
Q 001791 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPEL---LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT-PHLK 183 (1012)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~l---l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~-~~~~ 183 (1012)
++-.+.+ .++.++.+++..++.++...-..+....+ -+.+.+++.+ ...++..+..|+..++........ ....
T Consensus 90 vl~llqs-~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~kiA~sG 167 (550)
T KOG4224|consen 90 VLALLQS-CDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVKIARSG 167 (550)
T ss_pred HHHHHhC-cchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhhhhhcc
Confidence 3445555 89999999999999887654333333333 3355555554 456777888888887765322111 1122
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc--c
Q 001791 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG--T 261 (1012)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~--~ 261 (1012)
.+.|+ ...-++. +..+|..+..+|.++....++ +..+. -..-++++...+++.+.+++.-++..+..++- .
T Consensus 168 aL~pl-trLaksk-dirvqrnatgaLlnmThs~En---Rr~LV--~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 168 ALEPL-TRLAKSK-DIRVQRNATGALLNMTHSREN---RRVLV--HAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRR 240 (550)
T ss_pred chhhh-Hhhcccc-hhhHHHHHHHHHHHhhhhhhh---hhhhh--ccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHH
Confidence 23333 3333444 788999999999888765431 11111 01234566677778899999999998887763 2
Q ss_pred chHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccC
Q 001791 262 EPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHS 341 (1012)
Q Consensus 262 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~ 341 (1012)
..+.+...-+.+++.+..++. +.+++++-+|-..+..++...+|.-...+ ..-+|.+++.++...
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnlasdt~Yq~eiv~------ag~lP~lv~Llqs~~------- 305 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNLASDTEYQREIVE------AGSLPLLVELLQSPM------- 305 (550)
T ss_pred HHHHHHhcccchHHHHHHHHh--CCChHHHHHHHHHHhhhcccchhhhHHHh------cCCchHHHHHHhCcc-------
Confidence 233344444567777777774 45778888887777777763222111110 113455555543211
Q ss_pred CCCCCccccCCcchhhHHHHHHHHHHHcCCC-cch-HHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhH-H
Q 001791 342 AETEDEDAGESSNYSVGQECLDRLAIALGGN-TIV-PVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNL-E 417 (1012)
Q Consensus 342 ~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~-~~~-~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l-~ 417 (1012)
....-+...|+..++-+-+.+ .+. ..++.-+...+.- .+...+..|...+-.++........... .
T Consensus 306 ----------~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es 375 (550)
T KOG4224|consen 306 ----------GPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES 375 (550)
T ss_pred ----------hhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc
Confidence 001112234554444332211 111 1122223344443 4455777888777777754432222221 2
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhhhh--hchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc-
Q 001791 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTD--LGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP- 494 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~- 494 (1012)
.-+|.+...+.|..-.||.....|+..++-. .+..+ .-..++|.++....+ .+..||..|..+|.++.+....
T Consensus 376 gAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~l---ld~gi~~iLIp~t~s-~s~Ev~gNaAaAL~Nlss~v~~Y 451 (550)
T KOG4224|consen 376 GAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEAL---LDSGIIPILIPWTGS-ESEEVRGNAAAALINLSSDVEHY 451 (550)
T ss_pred CchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHH---hhcCCcceeecccCc-cchhhcccHHHHHHhhhhhhHHH
Confidence 3467777788888888888777777776542 22211 223578888888888 8899999999999999865431
Q ss_pred ----ccc-cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 495 ----EIL-TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 495 ----~~l-~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
+.. .|. +.|-..|..++.+....++.-+..++-.+.....
T Consensus 452 arviEawd~P~-~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 452 ARVIEAWDHPV-QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHHhcCcc-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 111 133 6666677777777777777777777777765543
No 79
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.68 E-value=0.00084 Score=85.80 Aligned_cols=541 Identities=17% Similarity=0.217 Sum_probs=298.2
Q ss_pred chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001791 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1012)
Q Consensus 374 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1012)
....-...+.+++.+..-..|.+|...+..++...+....+++..++..++..+.|+++.+|..|+.++.......+...
T Consensus 131 ~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~ 210 (2341)
T KOG0891|consen 131 LVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE 210 (2341)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc
Confidence 34444455555665555667889999999999999999999999999999999999999999999999887766554332
Q ss_pred H---hhhhhhhHHHHHhhcCCCCChH------------------------HHHHHHHHHH-------HHhhcC-------
Q 001791 454 Q---NQFHPQVLPALAGAMDDFQNPR------------------------VQAHAASAVL-------NFSENC------- 492 (1012)
Q Consensus 454 ~---~~~~~~il~~l~~~l~~~~~~~------------------------v~~~a~~al~-------~l~~~~------- 492 (1012)
. ...+...+...-..+.+ +... .+...+.... ..+...
T Consensus 211 ~~~~~~~~~rcvd~~~~~l~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~lk~~~i~~~l~~~~~~~~~~ 289 (2341)
T KOG0891|consen 211 AKLKPQWYQRCVDEARHGLSS-DGVKIHASLLVYNELLRISDPFLEKYDSTCVRQAKGKLLKSIVIRMTLSQILPLLAAF 289 (2341)
T ss_pred chhhhHHHHHHHHhccccccc-hHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccHHHHHHhccHHHhhh
Confidence 0 01111111111111111 1100 1111100000 000000
Q ss_pred -CcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHH
Q 001791 493 -TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC 571 (1012)
Q Consensus 493 -~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~ 571 (1012)
....-..|+...+..++..+.. ....++..++.++.+.+..+.+|...+...+.+.+....-..... -...+.|
T Consensus 290 ~~~~~~~~~l~~~~~~~l~~~~~----~~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~ 364 (2341)
T KOG0891|consen 290 NPAKFQVKYLHTEMDHLLSILRK----EKTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKF-EKSVFTC 364 (2341)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhc----cchhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhc-chhHHHH
Confidence 0000013455555555555542 226788889999999999988888776555554432210000000 1225778
Q ss_pred HHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhcc----C-
Q 001791 572 ISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQL----K- 646 (1012)
Q Consensus 572 l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~----~- 646 (1012)
++.++.++++..+......++..+.. .. ......+++..++...+ +..+.+.+.++..+.. .
T Consensus 365 ~~~~~~a~~~~~~~~~~~~il~~~~~---~~------~~~~l~e~l~~l~~rl~----~l~~~i~~rll~~~~~vl~~~a 431 (2341)
T KOG0891|consen 365 IGLLASALGPADQKDLNKDILEQMFK---CT------LSDSLLERLFILSQRIP----KLGQSIQDRLLNMTSQVLSGKA 431 (2341)
T ss_pred HHHHhhccCHHHHHhHHHHHHHHHhc---CC------chHHHHHHHHHHHHhcc----chhhHHHHHHHHHHHHHHhCcc
Confidence 88888888866554444555554432 11 11344445555555443 3344444444444321 1
Q ss_pred ---CCc-cccCCCCCccccCCCCcccchhhcCCceeeecch-hHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhcccc
Q 001791 647 ---PDV-TITSADSDNEIEDSDDDSMETITLGDKRIGIKTS-VLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL 721 (1012)
Q Consensus 647 ---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l 721 (1012)
+.. .+... +... ..+.-+++ ....-..|..+++.+...... ...++..++...+.
T Consensus 432 ~~~~~~~~vl~~---------------~~~p--~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-- 491 (2341)
T KOG0891|consen 432 FIQPGQFTVLPK---------------LAIP--KAILQKTGDSTDDIQLAFKTLGGFKFSGYS-LTLFVQQCVDSYLE-- 491 (2341)
T ss_pred ccCccccCccch---------------hccc--chhhhhcccccHHHHHHHHHHhhhhhhhhh-HHHHHHHHHHHHHh--
Confidence 100 00000 0000 00000000 000124467777777654322 22333444444332
Q ss_pred CccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCC
Q 001791 722 KFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1012)
Q Consensus 722 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1012)
..+.++|+.+..++..++.....+.++ .+...+++..++..++.....+.++..+..++.++.+-...-
T Consensus 492 --~~~~e~r~~~~l~~~~ll~~~~~~~~~-------~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~-- 560 (2341)
T KOG0891|consen 492 --ADDSEIRKNAALTCCELLKYDIICSQT-------SPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLNERFDAQ-- 560 (2341)
T ss_pred --cccHHHHHHHHHHHHHHHhhhhhhhcc-------cchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhccchhhh--
Confidence 347889999998888888776432111 111224455555666665556667767666666555111100
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH
Q 001791 802 LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE 881 (1012)
Q Consensus 802 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 881 (1012)
...+. ........+.. ..-..++.+...+|.++...+..+.|++..
T Consensus 561 laQ~~----~lr~~~~al~~------------------------------~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~ 606 (2341)
T KOG0891|consen 561 LAQPD----LLRLLFIALHD------------------------------ENFAIQELATVIIGRLSSYNPAYVLPSLRK 606 (2341)
T ss_pred hcCch----hHHHHHHHhhh------------------------------hhhhhHHhHHhhccccccccHHHHhHHHHH
Confidence 00111 11111111111 111234456677777777777778888888
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHH
Q 001791 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPL 961 (1012)
Q Consensus 882 ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~ 961 (1012)
........++-+.....+..+..-+..++......+.+|+..++..++..+.+....+-.++..++|.|+..++..+..+
T Consensus 607 ~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~ 686 (2341)
T KOG0891|consen 607 TLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKW 686 (2341)
T ss_pred HHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhc
Confidence 66665555433333333334444455566565666788999999999999999999999999999999999999766555
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhHccC
Q 001791 962 VGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRD 1003 (1012)
Q Consensus 962 ~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~~~p~ 1003 (1012)
....++.+.+.+.+.. +..-+.++..++|.+.....-
T Consensus 687 ~~~~~~~~~~~l~~~s-----~~~rr~aslk~l~~l~s~~~~ 723 (2341)
T KOG0891|consen 687 VDELFSLIIKMLQDQS-----SLGKRLAALKALGQLESSTGY 723 (2341)
T ss_pred cchHHHHHHHHHHHhh-----hhhchhHHHHHhhhhhcccce
Confidence 5566667777665432 456677788888888766443
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.67 E-value=7.3e-07 Score=90.10 Aligned_cols=183 Identities=19% Similarity=0.216 Sum_probs=124.3
Q ss_pred CcchhhHHHHHHHHHHHcCCCcchHHHH-------HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHH
Q 001791 352 SSNYSVGQECLDRLAIALGGNTIVPVAS-------EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1012)
Q Consensus 352 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~ 424 (1012)
|..+..+..-+..+...-.+....+.+. ..+...+.|....+-..|+.+++.++...+..+.++.+.++|.++
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 3344455555555554331123333333 344455666777888999999999999998888899999999999
Q ss_pred hhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhh-HHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC--cccccC--
Q 001791 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQV-LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP-- 499 (1012)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~i-l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~l~~-- 499 (1012)
..+.+++..+|.+|..+|..+++..+ +.+.+ ++.+....++ .++.+|..++.++..++...+ ...+..
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~ 173 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESCS------YSPKILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSDSSVLQKSA 173 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT-----GGG--HH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccchHhhhcccc
Confidence 99999999999999999999998764 22344 6777777888 899999999999999999887 333333
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhh
Q 001791 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1012)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 541 (1012)
.++.+.+.+...+.++++.+|..+-.++..+....++.....
T Consensus 174 ~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~ 215 (228)
T PF12348_consen 174 FLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESI 215 (228)
T ss_dssp HHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---
T ss_pred hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccc
Confidence 357899999999999999999999999999988888654333
No 81
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=0.0027 Score=73.70 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=101.9
Q ss_pred CcchHHHHHHHhhcCCCHHH-HHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001791 140 GWPELLPFMFQCVSSDSVKL-QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1012)
Q Consensus 140 ~~~~ll~~l~~~~~~~~~~~-r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1012)
....++..+++.+.+..+.. ..++...++.+.....+.+....-.-+..+...+..+ +..+|.+.++++++++...-.
T Consensus 267 ~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~e-s~~lRnavlei~~n~V~~~l~ 345 (1251)
T KOG0414|consen 267 GSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSE-SYTLRNAVLEICANLVASELR 345 (1251)
T ss_pred ccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888777665443 3444555555554444332222333334445555665 889999999999998876432
Q ss_pred cch-HhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHH
Q 001791 219 SAD-RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEF 297 (1012)
Q Consensus 219 ~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~ 297 (1012)
... .......-..+++.+.+.+.+-++-+|..+++++..+........ .....++......+. |-+.-||..|+..
T Consensus 346 d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~-~~~~eV~~la~grl~--DkSslVRk~Ai~L 422 (1251)
T KOG0414|consen 346 DEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPL-GSRTEVLELAIGRLE--DKSSLVRKNAIQL 422 (1251)
T ss_pred chhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCc-cHHHHHHHHHhcccc--cccHHHHHHHHHH
Confidence 222 222333333478888888888899999999999999887553322 223455555554443 3466789999999
Q ss_pred HHHHHH
Q 001791 298 VITLAE 303 (1012)
Q Consensus 298 l~~l~~ 303 (1012)
+..+..
T Consensus 423 l~~~L~ 428 (1251)
T KOG0414|consen 423 LSSLLD 428 (1251)
T ss_pred HHHHHh
Confidence 999887
No 82
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=0.0022 Score=70.48 Aligned_cols=589 Identities=14% Similarity=0.114 Sum_probs=285.6
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhcccCC--------
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPE-------- 138 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~~-------- 138 (1012)
+.|+.+|..|...|++.=+. ......+++.+.++ .+..+|..++..+..-+.+.|..
T Consensus 14 dada~~rt~AE~~Lk~leKq--------------PgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~ 79 (970)
T COG5656 14 DADAGKRTIAEAMLKDLEKQ--------------PGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKA 79 (970)
T ss_pred ccCcchhhHHHHHHHHhhcC--------------CcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCC
Confidence 67899999999999996433 13455677777664 67888888887777665543332
Q ss_pred CCcch----HHHHHHHhhcCCCHHHHHHHHHHHHH-hhh-hHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 001791 139 NGWPE----LLPFMFQCVSSDSVKLQESAFLIFAQ-LSQ-YIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF 212 (1012)
Q Consensus 139 ~~~~~----ll~~l~~~~~~~~~~~r~~al~~l~~-l~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~ 212 (1012)
+..++ ++..++..+..+....| .++.++.. +.. ..+.+ .++ +.|...+.+.++ +......++-|+..+
T Consensus 80 Dek~e~K~~lienil~v~l~sp~~tr-~~l~ail~~I~seD~ps~---~wg-l~p~~~nll~s~-ea~~vy~gLlcl~el 153 (970)
T COG5656 80 DEKSEAKKYLIENILDVFLYSPEVTR-TALNAILVNIFSEDKPSD---LWG-LFPKAANLLRSS-EANHVYTGLLCLEEL 153 (970)
T ss_pred cccHHHHHHHHHHHHHHHhcCCchHH-HHHHHHHHHhccccCchh---hcc-cchHHHHhhccc-chhHHHHHHHHHHHH
Confidence 11122 33444444433332222 33333322 222 12222 344 778888888887 788888999999999
Q ss_pred HHhhcCcc--hHh----HHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc----cchHHHHH--hHHHHHHHHHHh
Q 001791 213 IQCLTSSA--DRD----RFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG----TEPRFLRR--QLVDVVGSMLQI 280 (1012)
Q Consensus 213 ~~~~~~~~--~~~----~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~----~~~~~~~~--~~~~i~~~l~~~ 280 (1012)
+....... ... ....++|.+.+.-......++........-+|..+-. ..|.++.. .+...++..+.+
T Consensus 154 fkayRwk~ndeq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~~LP~~lsa~e~f~sw~ql~l~i 233 (970)
T COG5656 154 FKAYRWKYNDEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYYSLPDFLSAIETFSSWFQLSLRI 233 (970)
T ss_pred HHHHhhhccchHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhhCCHHHccchhhHHHHHHHHHH
Confidence 88754211 111 1223444444332222222343333333333332211 11333221 123444555555
Q ss_pred hccCC------cchHHHH---------HHHHHHHHHHHhhhccchhhhc----ch----hhHHHHHHHHHHhhccCCCCc
Q 001791 281 AEAES------LEEGTRH---------LAIEFVITLAEARERAPGMMRK----LP----QFINRLFAILMSMLLDIEDDP 337 (1012)
Q Consensus 281 ~~~~~------~~~~vr~---------~a~~~l~~l~~~~~~~~~~~~~----~~----~~~~~l~~~l~~~l~~~~~~~ 337 (1012)
+..+- .++++|. =|...+..++.. +....... .. ..++.++...++.+..-...+
T Consensus 234 ~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqR--y~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgq 311 (970)
T COG5656 234 LQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQR--YIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQ 311 (970)
T ss_pred HcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 54331 2233332 233344444332 11111000 11 122223333333322222333
Q ss_pred cccCCCCCCccccCCcchhhHHHHHHHHHHHc-CCCcchHHHHHHHHHhh-------------------CCCChh-----
Q 001791 338 LWHSAETEDEDAGESSNYSVGQECLDRLAIAL-GGNTIVPVASEQLPAYL-------------------AAPEWQ----- 392 (1012)
Q Consensus 338 ~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~~l-------------------~~~~~~----- 392 (1012)
-|..+. ..-.++.+.+.+ ..+..++.+-|.++=.+ .|++..
T Consensus 312 LWlsd~--------------~LYfi~~Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~ 377 (970)
T COG5656 312 LWLSDI--------------ELYFIDFFVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYY 377 (970)
T ss_pred eecchH--------------HHHHHHHHHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhc
Confidence 343221 011111111111 11222222222221111 111111
Q ss_pred --------HHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-----CC---CChhHHHHHHHHHHHhhhhh--chhHH
Q 001791 393 --------KHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----RD---PHPRVRWAAINAIGQLSTDL--GPDLQ 454 (1012)
Q Consensus 393 --------~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~d---~~~~vr~~a~~~l~~l~~~~--~~~~~ 454 (1012)
.-.||+..+-.+...-++ ..+..+++.+...+ ++ .+++-...|++.++.+...+ .....
T Consensus 378 df~d~g~spdlaal~fl~~~~sKrke---~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~a 454 (970)
T COG5656 378 DFFDNGLSPDLAALFFLIISKSKRKE---ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAA 454 (970)
T ss_pred chhcCCCChhHHHHHHHHHHhcccch---hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHH
Confidence 113344444333333232 23455566555554 12 35666678888888777622 11111
Q ss_pred hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001791 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1012)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 534 (1012)
...-.-+++.++..+++ +.--.+..||..+..+-..++.. ..+.++.+...+++++.+..++-.|.-++..+...-
T Consensus 455 n~me~fiv~hv~P~f~s-~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 455 NVMEYFIVNHVIPAFRS-NYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHHHHHHHHhhHhhcC-cccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 12234467777777788 66778999999999996666522 455677788888888888889999999998887653
Q ss_pred --HhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH--------HhcCCCC
Q 001791 535 --QEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS--------LQGSQME 604 (1012)
Q Consensus 535 --~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~--------l~~~~~~ 604 (1012)
.+.+..+++..|..|..+-+.- +...+ -.++..+..... +.+.|++++++..+.+ +..+.-+
T Consensus 531 q~h~k~sahVp~tmekLLsLSn~f---eiD~L----S~vMe~fVe~fs-eELspfa~eLa~~Lv~qFlkiaq~l~ens~d 602 (970)
T COG5656 531 QSHEKFSAHVPETMEKLLSLSNTF---EIDPL----SMVMESFVEYFS-EELSPFAPELAGSLVRQFLKIAQSLLENSSD 602 (970)
T ss_pred hhhHHHHhhhhHHHHHHHHhcccc---cchHH----HHHHHHHHHHhH-HhhchhHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 3456677777777777653221 11111 123333443444 5567776666654443 2222111
Q ss_pred CCCc------hhHHHHHHHHHHHHHhcCC--cccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCc
Q 001791 605 TDDP------TTSYMLQAWARLCKCLGQD--FLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDK 676 (1012)
Q Consensus 605 ~~~~------~~~~~~~~~~~l~~~~~~~--~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1012)
.++. ....+++++.++..++... .-.|+....-...+.+
T Consensus 603 ~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Fi--------------------------------- 649 (970)
T COG5656 603 TSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFI--------------------------------- 649 (970)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH---------------------------------
Confidence 1111 2334555566665555432 1122222111111111
Q ss_pred eeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHH
Q 001791 677 RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1012)
Q Consensus 677 ~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (1012)
+++...+--..|+..+....-.. +.+.|....+++.+..++.+.....--..+..++.+++...
T Consensus 650 ---lkn~i~dfy~Ea~dildg~tf~s-keI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 650 ---LKNEISDFYQEALDILDGYTFMS-KEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred ---HhhhHHHHHHHHHHHHhhhhHHH-HHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 00111111234555555444333 33568888888888887765321234556666777777653
No 83
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=98.50 E-value=5.2e-07 Score=72.65 Aligned_cols=67 Identities=33% Similarity=0.565 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCccc--------CCCHHHHHHHHHHHHHHH
Q 001791 42 AELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--------RLSLHTQSSLKSMLLQSI 112 (1012)
Q Consensus 42 A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~--------~l~~~~~~~i~~~ll~~l 112 (1012)
||++|+++++++|+ |...|++++.+ +.++.+|++|+++||+.+.++ |. .++++.++.||+.+++.|
T Consensus 1 AE~~L~~~~~~~p~-~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~----W~~~~~~~~~~~~~~~k~~Ik~~ll~~l 75 (77)
T PF03810_consen 1 AEQQLKQFQKQNPG-FWQYLLQILSSNSQDPEVRQLAAILLKNLIKKN----WSPSKQKGWSQLPEEEKEQIKSQLLQLL 75 (77)
T ss_dssp HHHHHHHHHHSCTC-HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHS----GGHHHHHHHHGSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc----CchhhccCCCCCCHHHHHHHHHHHHHHH
Confidence 78999999994466 55999999965 669999999999999999998 88 999999999999999988
Q ss_pred h
Q 001791 113 Q 113 (1012)
Q Consensus 113 ~ 113 (1012)
.
T Consensus 76 ~ 76 (77)
T PF03810_consen 76 L 76 (77)
T ss_dssp H
T ss_pred c
Confidence 5
No 84
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00071 Score=73.07 Aligned_cols=295 Identities=17% Similarity=0.193 Sum_probs=180.3
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 001791 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1012)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~ 261 (1012)
-..+...+.....+. +..||..|++.+..+-+.+. +-..+.+...+.+.+.+.++|..|++++.-....
T Consensus 196 ~~~~~~~l~~~~~~~-D~~Vrt~A~eglL~L~eg~k----------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~ 264 (823)
T KOG2259|consen 196 REHAARGLIYLEHDQ-DFRVRTHAVEGLLALSEGFK----------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNR 264 (823)
T ss_pred HHHHHHHHHHHhcCC-CcchHHHHHHHHHhhccccc----------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 445555566666776 89999999999988877431 1124566677778888999999999999988877
Q ss_pred chHHH------HHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHH-----HHHHHHHhh
Q 001791 262 EPRFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINR-----LFAILMSML 330 (1012)
Q Consensus 262 ~~~~~------~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~-----l~~~l~~~l 330 (1012)
+|... .+..+..+..++..+ .|.+-.+|..|.+.+..+-... ..++.+ +...+-.+-
T Consensus 265 ~p~~~e~e~~e~kl~D~aF~~vC~~v--~D~sl~VRV~AaK~lG~~~~vS----------ee~i~QTLdKKlms~lRRkr 332 (823)
T KOG2259|consen 265 CPAPLERESEEEKLKDAAFSSVCRAV--RDRSLSVRVEAAKALGEFEQVS----------EEIIQQTLDKKLMSRLRRKR 332 (823)
T ss_pred CCCcccchhhhhhhHHHHHHHHHHHH--hcCceeeeehHHHHhchHHHhH----------HHHHHHHHHHHHhhhhhhhh
Confidence 74211 234455555555555 3446678888887777765531 112222 222111111
Q ss_pred ccC------CCCccccCCCC------CCc-cccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHH
Q 001791 331 LDI------EDDPLWHSAET------EDE-DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAA 397 (1012)
Q Consensus 331 ~~~------~~~~~~~~~~~------~~e-d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aa 397 (1012)
... ....+|....+ .++ |.++.++-.. -.+| .+ ...+.|.-..+|.+|
T Consensus 333 ~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~s---------GACG--A~--------VhGlEDEf~EVR~AA 393 (823)
T KOG2259|consen 333 TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPS---------GACG--AL--------VHGLEDEFYEVRRAA 393 (823)
T ss_pred hcccchHHHHhcCCcccCccccccCchhhccccccccccc---------cccc--ee--------eeechHHHHHHHHHH
Confidence 000 01223433221 111 1111111000 0011 11 112334456799999
Q ss_pred HHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHH
Q 001791 398 LIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1012)
Q Consensus 398 l~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1012)
+..++.++...+. +-..-+.++...++|+...||--|..++..++..+. .-++.++.+++.|.| .++++
T Consensus 394 V~Sl~~La~ssP~----FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D-~s~dv 462 (823)
T KOG2259|consen 394 VASLCSLATSSPG----FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLED-RSVDV 462 (823)
T ss_pred HHHHHHHHcCCCC----cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHh-cCHHH
Confidence 9999999987664 334556778888999999999999999999998742 334567777788888 88889
Q ss_pred HHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 478 QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 478 ~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
|.+ +..++..+.-..+ ..+...+..+++.+..- +.-|...+.|++.+....+
T Consensus 463 Re~----l~elL~~~~~~d~-~~i~m~v~~lL~~L~ky-PqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 463 REA----LRELLKNARVSDL-ECIDMCVAHLLKNLGKY-PQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred HHH----HHHHHHhcCCCcH-HHHHHHHHHHHHHhhhC-CCCcHHHHHHHHHHhccCh
Confidence 875 4455554443322 45566677777766543 2346788899988887655
No 85
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00018 Score=75.09 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=131.9
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001791 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1012)
Q Consensus 376 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1012)
+.++..+-....+..|+.|.....-+..+....--.-.+.+.+++..+.....|++..+|..|+.+|++.+...+... .
T Consensus 216 ~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv-~ 294 (533)
T KOG2032|consen 216 GKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKV-R 294 (533)
T ss_pred HHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHH-H
Confidence 334433333444567888887776666665432111124567788888889999999999999999999999877766 6
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
.|...++..++..|-|..+..|...+..+|..+.+......+.+|+-++--.+..+..+.+.++|..++..+|.++...|
T Consensus 295 th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 295 THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcC
Confidence 78899999999888775678999999999999999888788999999999999999999999999999999999999888
Q ss_pred hhhHhh
Q 001791 536 EHFQKY 541 (1012)
Q Consensus 536 ~~~~~~ 541 (1012)
.....+
T Consensus 375 ~~~e~~ 380 (533)
T KOG2032|consen 375 GGWEEF 380 (533)
T ss_pred CCchhh
Confidence 655543
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0038 Score=68.71 Aligned_cols=430 Identities=16% Similarity=0.182 Sum_probs=225.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHH
Q 001791 27 LISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSS 103 (1012)
Q Consensus 27 ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~---~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~ 103 (1012)
+-+.+-++|.+++-.|-+.+-..-- |-+.+.+.+..|+.- +.+.+++++-..++--.=+.... .++-+| .--
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~ml-nGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~d---gkl~~E-MIL 99 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALML-NGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSD---GKLLHE-MIL 99 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHH-cCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCC---cccHHH-HHH
Confidence 3344556677777777766543333 233344555566543 55666666544443322111100 011111 112
Q ss_pred HHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHH
Q 001791 104 LKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLK 183 (1012)
Q Consensus 104 i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~ 183 (1012)
+-+.+-.-|.+ |+..+|-...+-+..+- -| ....+++|.+.+++...++-+|+.|..++..+... .+++.|..+
T Consensus 100 vcna~RkDLQH-PNEyiRG~TLRFLckLk---E~-ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pDap 173 (948)
T KOG1058|consen 100 VCNAYRKDLQH-PNEYIRGSTLRFLCKLK---EP-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPDAP 173 (948)
T ss_pred HHHHHhhhccC-chHhhcchhhhhhhhcC---cH-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCChH
Confidence 22333344555 78888877555555432 22 35677888899999988889999999988888776 344555667
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch
Q 001791 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1012)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~ 263 (1012)
.++.-++. .+. ++.-+..|+-.|...-. +.-.. ++...+.+ +.+=++......++.+...+...|
T Consensus 174 eLi~~fL~--~e~-DpsCkRNAFi~L~~~D~--------ErAl~---Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p 238 (948)
T KOG1058|consen 174 ELIESFLL--TEQ-DPSCKRNAFLMLFTTDP--------ERALN---YLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANP 238 (948)
T ss_pred HHHHHHHH--hcc-CchhHHHHHHHHHhcCH--------HHHHH---HHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCH
Confidence 76654442 233 55555566544432211 11111 11111111 111123333444555555554444
Q ss_pred HHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCC
Q 001791 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1012)
Q Consensus 264 ~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1012)
..-..++.-++..+. ..++.++..|...+..+.. . +..+......++.++....+
T Consensus 239 ~~~~~~i~~i~~lL~------stssaV~fEaa~tlv~lS~----~-------p~alk~Aa~~~i~l~~kesd-------- 293 (948)
T KOG1058|consen 239 AEKARYIRCIYNLLS------STSSAVIFEAAGTLVTLSN----D-------PTALKAAASTYIDLLVKESD-------- 293 (948)
T ss_pred HHhhHHHHHHHHHHh------cCCchhhhhhcceEEEccC----C-------HHHHHHHHHHHHHHHHhccC--------
Confidence 444444444444332 1134444443322222221 1 22333333333333332211
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHc-CCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHH
Q 001791 344 TEDEDAGESSNYSVGQECLDRLAIAL-GGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSM 422 (1012)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~ 422 (1012)
...+ .-.++++...- +.+.++..+.--+...+++++..+|.-++...-.++.. ..+.+++..
T Consensus 294 --------nnvk---lIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss------rNvediv~~ 356 (948)
T KOG1058|consen 294 --------NNVK---LIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS------RNVEDIVQF 356 (948)
T ss_pred --------cchh---hhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh------ccHHHHHHH
Confidence 1111 11233333221 11334444444455678889999998888766666554 234444444
Q ss_pred HHhhC-------CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 423 VLNSF-------RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 423 l~~~l-------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
+...+ +|++..-|..-.+++...+-.++ .+...+++.+++.+.| .++........++...++.++.
T Consensus 357 Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-----~~aatvV~~ll~fisD-~N~~aas~vl~FvrE~iek~p~- 429 (948)
T KOG1058|consen 357 LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-----EVAATVVSLLLDFISD-SNEAAASDVLMFVREAIEKFPN- 429 (948)
T ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-----HHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHhCch-
Confidence 44433 35566778888888887776653 4678899999999999 8887777777888888776652
Q ss_pred cccCcHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhH
Q 001791 496 ILTPYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 496 ~l~~~~~~il~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
++ ..|+..++..+.. ....+.+.+++.+|.-+...+
T Consensus 430 -Lr---~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 430 -LR---ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred -HH---HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 21 2455555554432 234566677777776665443
No 87
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.39 E-value=4.2e-06 Score=69.12 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCC
Q 001791 898 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPN 977 (1012)
Q Consensus 898 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~ 977 (1012)
.|..++-.++.+....+..+.+|++.++|.++.+++|+++.||..|..+|..+++..+..+.+++++++..|.+.+.+++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999998874
Q ss_pred CCCchhhhhHHHHHHHHHHHH
Q 001791 978 ALQPENLMAYDNAVSALGKIC 998 (1012)
Q Consensus 978 ~~~~~~~~~~~na~~~~~~l~ 998 (1012)
. -..+++.-+-|++
T Consensus 82 ~-------~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 82 E-------NVRSAAELLDRLL 95 (97)
T ss_pred h-------hHHHHHHHHHHHh
Confidence 2 2344555555543
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.38 E-value=2.6e-06 Score=76.23 Aligned_cols=111 Identities=19% Similarity=0.232 Sum_probs=90.2
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001791 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1012)
Q Consensus 378 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1012)
+++.+.+.+.+.+|..|..++.+++.++...++....... .+++.+.+.++++++.++..|++++++++...+... ..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~-~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK-LI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH-HH
Confidence 4566667778889999999999999999876554444444 788999999999999999999999999998654332 22
Q ss_pred -hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 457 -FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 457 -~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
.-..+++.+.+.+++ .+..++..++++|.++++
T Consensus 87 ~~~~g~l~~l~~~l~~-~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 87 VLEAGGVPKLVNLLDS-SNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHCCChHHHHHHHhc-CCHHHHHHHHHHHHHhhC
Confidence 234589999999998 789999999999998863
No 89
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=98.38 E-value=0.00055 Score=74.57 Aligned_cols=241 Identities=13% Similarity=0.183 Sum_probs=150.3
Q ss_pred CcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc-cccccchhhHHHHHH
Q 001791 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRAKSMEC 571 (1012)
Q Consensus 493 ~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~~~~lr~~a~~~ 571 (1012)
.++.+.|+...++..|+..+..+...--+....|+-.+....++...|+...+++.|..++..- .++.+...-...+++
T Consensus 16 ~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEs 95 (435)
T PF03378_consen 16 SKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFES 95 (435)
T ss_dssp -GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHH
T ss_pred CHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHH
Confidence 4467889999999999999987655556778899999999989999999999988888877542 333444455668999
Q ss_pred HHHHHhhhCh---hhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhc-CCcccchhhhhHHHHHHhccCC
Q 001791 572 ISLVGMAVGK---DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG-QDFLPYMSVVMPPLLQSAQLKP 647 (1012)
Q Consensus 572 l~~l~~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~l~~i~~~ll~~~~~~~ 647 (1012)
++.+.+.+.+ +....+-+.+++.+..+..+++ .+..+++++.++.+.+... ..+.+....++|.|+.-.
T Consensus 96 i~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV---~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---- 168 (435)
T PF03378_consen 96 IGALIRFVCEADPEAVSQFEEALFPPFQEILQQDV---QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---- 168 (435)
T ss_dssp HHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG----
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc----
Confidence 9999886553 2233455666777766444333 3567888888888887765 445555555555554221
Q ss_pred CccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHhccccCccC
Q 001791 648 DVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFF--PWIDQVAPTLVPLLKFYF 725 (1012)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~--p~~~~~~~~l~~~l~~~~ 725 (1012)
-|+ +++.. =...+.|..+++..+..+. ++++.++..+-+++....
T Consensus 169 -------------------lWe-----------~~gni---PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~ 215 (435)
T PF03378_consen 169 -------------------LWE-----------RRGNI---PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKA 215 (435)
T ss_dssp -------------------GGG-----------STTTH---HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TT
T ss_pred -------------------hhc-----------cCCCc---CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCC
Confidence 111 01111 1234578888888777654 677788887777776543
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 001791 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASM 788 (1012)
Q Consensus 726 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 788 (1012)
++ ..+.+.|..++..+ ..+.+.+++..++..+++.+.+.+....+...
T Consensus 216 ~D---~~gF~LL~~iv~~~------------p~~~l~~yl~~I~~lll~RLq~skT~kf~~~f 263 (435)
T PF03378_consen 216 ND---HYGFDLLESIVENL------------PPEALEPYLKQIFTLLLTRLQSSKTEKFVKRF 263 (435)
T ss_dssp CH---HHHHHHHHHHHHHS-------------HHHHGGGHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred cc---hHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHH
Confidence 33 45778888888876 23455666667777777777665544444333
No 90
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.35 E-value=0.00056 Score=70.81 Aligned_cols=430 Identities=14% Similarity=0.128 Sum_probs=221.9
Q ss_pred HhHHHHHHHHHHHHHhc----ccCCCCcchHHHHH---------HHhhcCCCHHHHHHHHHHHHHhhhhHh---------
Q 001791 118 KSISKKLCDTVSELASN----ILPENGWPELLPFM---------FQCVSSDSVKLQESAFLIFAQLSQYIG--------- 175 (1012)
Q Consensus 118 ~~vr~~~~~~l~~i~~~----~~~~~~~~~ll~~l---------~~~~~~~~~~~r~~al~~l~~l~~~~~--------- 175 (1012)
.++|..+..++....+. .+. +.|.-++|.- .-.++++++..|..|+.++..+.+...
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~y-gyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLY-GYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhh-ceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 44555555554444332 111 5675555432 123567788889899999888876532
Q ss_pred --hhcccc-------HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChH
Q 001791 176 --DTLTPH-------LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1012)
Q Consensus 176 --~~~~~~-------~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 246 (1012)
..|.|+ +.++..+++-.|..+..+.+....++|+..++...+- ...-..++-.+++.+...+.+.|+.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~---~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPY---DRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCch---HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 123332 3444555555555544678888999999999986431 1111234556677777788888999
Q ss_pred HHHHHHHHHHHHHccchHH--HH--------------HhH------H------HHHH-----------------HHH---
Q 001791 247 TAQEALELLIELAGTEPRF--LR--------------RQL------V------DVVG-----------------SML--- 278 (1012)
Q Consensus 247 ~~~~~~~~L~~l~~~~~~~--~~--------------~~~------~------~i~~-----------------~l~--- 278 (1012)
++..++.++..++...... +. +|. + ...+ .+.
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 9999999999887654210 00 000 0 0000 000
Q ss_pred --------------HhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCC
Q 001791 279 --------------QIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1012)
Q Consensus 279 --------------~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1012)
..++.......+|..+++.+..++.+ .. ...-+..++...+...+.+.
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~----~~---~~~~~~~~l~RvI~~~~~~~----------- 307 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARY----FS---MTQAYLMELGRVICKCMGEA----------- 307 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHccCCCC-----------
Confidence 00000011223455555555555542 00 11112222222222211111
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcC----CCcchHHHH-----------HHHHHhhCCCChhHHHHHHHHHHHHHhhcH
Q 001791 345 EDEDAGESSNYSVGQECLDRLAIALG----GNTIVPVAS-----------EQLPAYLAAPEWQKHHAALIALAQIAEGCA 409 (1012)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~----~~~~~~~~~-----------~~l~~~l~~~~~~~r~aal~~l~~l~~~~~ 409 (1012)
..+.+..+..+++.+...++ ++..-..+. |.-.....+.......+++.++..+.....
T Consensus 308 ------~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 308 ------DPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAF 381 (728)
T ss_pred ------ChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhh
Confidence 22244445556665554332 111110110 000111122334455566666666543322
Q ss_pred HHHHHhHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 001791 410 KVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1012)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1012)
..+.+.-....+.++.+..| ++..++.+|.+.++.+.-+-+......+.......++..+.| ..-.+|..+.++++++
T Consensus 382 ~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d-~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 382 SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLED-KSLNVRAKAAWSLGNI 460 (728)
T ss_pred cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhh-HhHhHHHHHHHHhhhh
Confidence 21111223455666666654 466788899998887765543332234566677777777877 6678899999999998
Q ss_pred hhcCCcc--cc----cCcHHHHHHHHHHHhh---cCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHH-HHHHhhccc
Q 001791 489 SENCTPE--IL----TPYLDGIVSKLLVLLQ---NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFL-KAILVNATD 558 (1012)
Q Consensus 489 ~~~~~~~--~l----~~~~~~il~~l~~~l~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l-~~~l~~~~~ 558 (1012)
.+.+-.. .. ..+....+..+...-. ..+.+|+..++.+++++......-..+-+..++..- .+.+....-
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~ 540 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLT 540 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceec
Confidence 7754211 11 1222333333333222 124689999999999998776533333333333222 222222222
Q ss_pred cccchhhHHHHHHHHHHH
Q 001791 559 KSNRMLRAKSMECISLVG 576 (1012)
Q Consensus 559 ~~~~~lr~~a~~~l~~l~ 576 (1012)
+...++|-.++.++|.+.
T Consensus 541 ~~~~kV~WNaCya~gNLf 558 (728)
T KOG4535|consen 541 EAAMKVRWNACYAMGNLF 558 (728)
T ss_pred ccccccchHHHHHHHHhh
Confidence 345567777777777775
No 91
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.33 E-value=1.2e-06 Score=64.71 Aligned_cols=55 Identities=33% Similarity=0.464 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHh
Q 001791 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQL 445 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l 445 (1012)
|.+|.+|+.+||.++...++.+.++++.+++.+...|.|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999875
No 92
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=0.011 Score=65.43 Aligned_cols=74 Identities=16% Similarity=0.234 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhc
Q 001791 855 EVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEAC 932 (1012)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l 932 (1012)
.+|..+--.+++++...|+.+.|++++++..++ ++.+..+-...++.+..++......+-+.+++++|.++.++
T Consensus 712 ~iRsavrft~hRmI~~lg~~vlPfipklie~lL----~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rI 785 (980)
T KOG2021|consen 712 NIRSAVRFTFHRMIPILGNKVLPFIPKLIELLL----SSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRI 785 (980)
T ss_pred hhHHHHHHHHHHHHHhcchhhhcchHHHHHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888999999999999999998887766 46677777788889999988888888888888888877654
No 93
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0042 Score=67.86 Aligned_cols=353 Identities=14% Similarity=0.181 Sum_probs=190.5
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH
Q 001791 150 QCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1012)
Q Consensus 150 ~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 229 (1012)
++++++....+..+..++..+.+.-.+ ....++..+.+-|.+. ++.-..-|+.|++.+-+.- ..+.|..
T Consensus 81 ~LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~iknDL~sr-n~~fv~LAL~~I~niG~re----~~ea~~~-- 149 (938)
T KOG1077|consen 81 NLLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIKNDLSSR-NPTFVCLALHCIANIGSRE----MAEAFAD-- 149 (938)
T ss_pred HHhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhccHh----HHHHhhh--
Confidence 455555555666666666666665433 2444455555555555 5555667888887766532 2333333
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccc
Q 001791 230 PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAP 309 (1012)
Q Consensus 230 ~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~ 309 (1012)
.+-+.+.. .+..+-+++.+..||..+.+..|+.+.+ +...+.+..+++ |.+-.+...+..++..+++ +.|
T Consensus 150 -DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~--~~W~~riv~LL~--D~~~gv~ta~~sLi~~lvk---~~p 219 (938)
T KOG1077|consen 150 -DIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNP--GEWAQRIVHLLD--DQHMGVVTAATSLIEALVK---KNP 219 (938)
T ss_pred -hhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccCh--hhHHHHHHHHhC--ccccceeeehHHHHHHHHH---cCC
Confidence 22232221 1224457788888888888887776544 223333334443 2344555566777777776 233
Q ss_pred hhhhcchhhHHHHHHHHHHhhccC----CCC-ccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCC---cchHHHHHH
Q 001791 310 GMMRKLPQFINRLFAILMSMLLDI----EDD-PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN---TIVPVASEQ 381 (1012)
Q Consensus 310 ~~~~~~~~~~~~l~~~l~~~l~~~----~~~-~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~~ 381 (1012)
. .....++..+..+... .-+ .++.-- ....+| ...+++..|. .++.. .....+...
T Consensus 220 ~-------~yk~~~~~avs~L~riv~~~~t~~qdYTyy-------~vP~PW-L~vKl~rlLq-~~p~~~D~~~r~~l~ev 283 (938)
T KOG1077|consen 220 E-------SYKTCLPLAVSRLSRIVVVVGTSLQDYTYY-------FVPAPW-LQVKLLRLLQ-IYPTPEDPSTRARLNEV 283 (938)
T ss_pred H-------HHhhhHHHHHHHHHHHHhhcccchhhceee-------cCCChH-HHHHHHHHHH-hCCCCCCchHHHHHHHH
Confidence 2 2233333333322211 000 000000 011122 1222333222 22211 111112222
Q ss_pred HHHhh-------CCCCh---hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001791 382 LPAYL-------AAPEW---QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 382 l~~~l-------~~~~~---~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
+...+ ++.+. ..+.|.++-.-.++.+... -.+.+.+-+..+-+.+.+..+.+|.-|+..+..++..-..
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~-e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s 362 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDS-EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFS 362 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccch
Confidence 22222 23333 3334444433333333221 1134556667778888999999999999999988865221
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
......-...++..|+...+..+|..|...|-.+|+.-. ...|+..+++.+.+.+..+|+....=++-++
T Consensus 363 ---~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N-------ak~IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 363 ---IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN-------AKQIVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred ---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 122222244555666622678899999999999987443 3567888888888899999999888888887
Q ss_pred HHhHhhhHhhHhhhhHHHH
Q 001791 532 DSSQEHFQKYYDAVMPFLK 550 (1012)
Q Consensus 532 ~~~~~~~~~~~~~il~~l~ 550 (1012)
.....+..=|++.++..+.
T Consensus 433 EKyAtDy~WyVdviLqLir 451 (938)
T KOG1077|consen 433 EKYATDYSWYVDVILQLIR 451 (938)
T ss_pred HHhcCCcchhHHHHHHHHH
Confidence 7766555556666665443
No 94
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00074 Score=74.96 Aligned_cols=406 Identities=18% Similarity=0.186 Sum_probs=225.6
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~---~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
..+...+....++|+..|.-|-+.+..+.- +.++.+++.-+. ++.++.+|+.|++...++...+.. -
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~-------~ 155 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPD-------L 155 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEee---hHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChh-------h
Confidence 466677778889999999999998876554 223445554443 478899999999999998765411 1
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc----chHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhH
Q 001791 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI 174 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~----~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~ 174 (1012)
.....+...|-..+.+ .++.|-..+..++..|...... ..- +.++..+++.+..-+ --+-+.++..+.++.
T Consensus 156 ~~~~gl~~~L~~ll~D-~~p~VVAnAlaaL~eI~e~~~~-~~~~~l~~~~~~~lL~al~ec~---EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSD-SNPMVVANALAALSEIHESHPS-VNLLELNPQLINKLLEALNECT---EWGQIFILDCLAEYV 230 (734)
T ss_pred ccccchhHHHHHHhcC-CCchHHHHHHHHHHHHHHhCCC-CCcccccHHHHHHHHHHHHHhh---hhhHHHHHHHHHhcC
Confidence 1122344455555554 6766666666788888765432 122 333444444333222 223456667777776
Q ss_pred hhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001791 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALEL 254 (1012)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~ 254 (1012)
+++- .....++..+...|... ++.|...+.+.+...+..+.+ ....++..+-+.+...+.. .++...-++.-
T Consensus 231 p~d~-~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~-----~~~~~~~K~~~pl~tlls~-~~e~qyvaLrN 302 (734)
T KOG1061|consen 231 PKDS-REAEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ-----VNELLFKKVAPPLVTLLSS-ESEIQYVALRN 302 (734)
T ss_pred CCCc-hhHHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-----HHHHHHHHhcccceeeecc-cchhhHHHHhh
Confidence 6543 24667788888888886 888889999999988887531 1111111222222222222 34777777777
Q ss_pred HHHHHccchHHHHHhHHHHH--------------HHHHHhhc--------------cCCcchHHHHHHHHHHHHHHHhhh
Q 001791 255 LIELAGTEPRFLRRQLVDVV--------------GSMLQIAE--------------AESLEEGTRHLAIEFVITLAEARE 306 (1012)
Q Consensus 255 L~~l~~~~~~~~~~~~~~i~--------------~~l~~~~~--------------~~~~~~~vr~~a~~~l~~l~~~~~ 306 (1012)
+.-+....|..+...+..++ +.+...+. ..+.+.+....++.++..++..
T Consensus 303 i~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik-- 380 (734)
T KOG1061|consen 303 INLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIK-- 380 (734)
T ss_pred HHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhh--
Confidence 77777777765443222111 00000000 0111222222333333333321
Q ss_pred ccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh
Q 001791 307 RAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL 386 (1012)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l 386 (1012)
..+. ..+++.++..+....+ -...-+...+..+...++ .....+.+.+...+
T Consensus 381 --------~e~~-~~cv~~lLell~~~~~-----------------yvvqE~~vvi~dilRkyP--~~~~~vv~~l~~~~ 432 (734)
T KOG1061|consen 381 --------AEQS-NDCVSILLELLETKVD-----------------YVVQEAIVVIRDILRKYP--NKYESVVAILCENL 432 (734)
T ss_pred --------hhhh-hhhHHHHHHHHhhccc-----------------ceeeehhHHHHhhhhcCC--Cchhhhhhhhcccc
Confidence 1111 3344444443331100 011123445555565665 22355666666666
Q ss_pred CC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHH
Q 001791 387 AA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPAL 465 (1012)
Q Consensus 387 ~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l 465 (1012)
.+ ++++.|.+-++.+|.-++..++ ...++..+++.+.|+...|+..-+.+.-++.-..+..- .+.+..+++.
T Consensus 433 ~sl~epeak~amiWilg~y~~~i~~-----a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~t-q~~l~~vL~~- 505 (734)
T KOG1061|consen 433 DSLQEPEAKAALIWILGEYAERIEN-----ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTET-QELLQGVLPL- 505 (734)
T ss_pred cccCChHHHHHHHHHHhhhhhccCc-----HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccH-HHHHHHHHhh-
Confidence 65 6889999999999998887653 45677888888888888887665555444332222221 2233333332
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHh
Q 001791 466 AGAMDDFQNPRVQAHAASAVLNFS 489 (1012)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~ 489 (1012)
+..+..++.+|..+..-..-+.
T Consensus 506 --~~~d~~~~dlrDr~l~Y~RlLs 527 (734)
T KOG1061|consen 506 --ATADTDNPDLRDRGLIYWRLLS 527 (734)
T ss_pred --hhccccChhhhhhHHHHHHHhh
Confidence 3444456888888876555443
No 95
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0075 Score=67.05 Aligned_cols=290 Identities=18% Similarity=0.192 Sum_probs=172.2
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
....+++.+-.++.+. ...|...|.+++..+.... ... +-| .+..+..++.++....|..|.+.|.+++.
T Consensus 242 ~~s~~~~fl~s~l~~K-~emV~~EaArai~~l~~~~-----~r~---l~p-avs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHK-SEMVIYEAARAIVSLPNTN-----SRE---LAP-AVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred chhhHHHHHHHHHhch-hHHHHHHHHHHHhhccccC-----Hhh---cch-HHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 4567778888888876 7777777777776665543 111 222 45566666778888899999999999998
Q ss_pred cchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCcccc
Q 001791 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1012)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1012)
.+|....---.++-+ + . .+.+..+...|+..+..-.. ...+..++..+...+.+.+++
T Consensus 312 ~~P~~v~~cN~elE~-l---I--td~NrsIat~AITtLLKTG~------------e~sv~rLm~qI~~fv~disDe---- 369 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLES-L---I--TDSNRSIATLAITTLLKTGT------------ESSVDRLMKQISSFVSDISDE---- 369 (865)
T ss_pred hCCccccccchhHHh-h---h--cccccchhHHHHHHHHHhcc------------hhHHHHHHHHHHHHHHhcccc----
Confidence 887543321111111 1 1 12333444444433332222 113344455444444444321
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHH
Q 001791 341 SAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQV 419 (1012)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i 419 (1012)
-.....+.+..++..++. -...+++++...+.+ .....+.+.+.++..+++..++.-..-+..+
T Consensus 370 -------------FKivvvdai~sLc~~fp~--k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~L 434 (865)
T KOG1078|consen 370 -------------FKIVVVDAIRSLCLKFPR--KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHL 434 (865)
T ss_pred -------------ceEEeHHHHHHHHhhccH--HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 123445677777777752 234566777776654 5677788888888888876554333445555
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-HhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCccccc
Q 001791 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1012)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1012)
+.++..+- .+..+...+..+....+... ...|...+...+. - .+..||.+|..++..+. .+...
T Consensus 435 CefIEDce------~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi----L-En~ivRaaAv~alaKfg--~~~~~-- 499 (865)
T KOG1078|consen 435 CEFIEDCE------FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI----L-ENAIVRAAAVSALAKFG--AQDVV-- 499 (865)
T ss_pred HHHHHhcc------chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh----h-hhhhhHHHHHHHHHHHh--cCCCC--
Confidence 55554432 23345555555555443211 0234444444433 2 56889999999999998 22222
Q ss_pred CcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001791 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1012)
Q Consensus 499 ~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 533 (1012)
..+.|...+..++.+.+..+|++|--.+..+-..
T Consensus 500 -l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 500 -LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred -ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 2355667777888999999999998888887744
No 96
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.0015 Score=67.69 Aligned_cols=480 Identities=13% Similarity=0.138 Sum_probs=218.2
Q ss_pred CCCHHHHHHHHHHHHHhhhhHhhh-ccccHHHHHH---------HHHHhhcCCCChHHHHHHHHHHHHHHHhhc----C-
Q 001791 154 SDSVKLQESAFLIFAQLSQYIGDT-LTPHLKHLHA---------VFLNCLTNSNNPDVKIAALNAVINFIQCLT----S- 218 (1012)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~-~~~~~~~l~~---------~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~----~- 218 (1012)
+....+|.+|+.++......++.. +-.|+..++| ++.-.|+|+ +++.|..|++.+..+.+.-+ .
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~-~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDP-SPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCC-ChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345688999999999888876643 2222222211 222356887 99999999999988876421 0
Q ss_pred -cchHhHHHhh-------HHHHHHHHHHHH-hcCChHHHHHHHHHHHHHHccchHH-H-HHhHHHHHHHHHHhhccCCcc
Q 001791 219 -SADRDRFQDL-------LPLMMRTLTESL-NNGNEATAQEALELLIELAGTEPRF-L-RRQLVDVVGSMLQIAEAESLE 287 (1012)
Q Consensus 219 -~~~~~~~~~~-------~~~ll~~l~~~l-~~~~~~~~~~~~~~L~~l~~~~~~~-~-~~~~~~i~~~l~~~~~~~~~~ 287 (1012)
......|.++ +-..-..+...+ ....+.+..++++||..+++..|-. + ..++-.++..+-... ++.+
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i--~~~d 163 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYI--RHKD 163 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh--hcCC
Confidence 0001111110 111111122222 2345677888999999999876522 1 112223333333333 3456
Q ss_pred hHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHH-HH-Hhhcc-CCCCccccCC----CCCC--cc-ccC--Ccch
Q 001791 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI-LM-SMLLD-IEDDPLWHSA----ETED--ED-AGE--SSNY 355 (1012)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~-~~l~~-~~~~~~~~~~----~~~~--ed-~~~--~~~~ 355 (1012)
..+|..++..+..++.+..-.| .+...+.. .- ..... ....++|+.. +.+. ++ ++. .+..
T Consensus 164 ~~v~vs~l~~~~~~v~t~~~~p--------ei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~ 235 (728)
T KOG4535|consen 164 VNVRVSSLTLLGAIVSTHAPLP--------EVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPC 235 (728)
T ss_pred CChhhHHHHHHHHHHhcCCCCH--------HHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCc
Confidence 7788888888888877521111 11111110 00 00000 0011233211 0000 00 000 0000
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC--CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001791 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYLAA--PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1012)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1012)
....-++. ++- .++++ ..........+.+ .-.-+|..++..+..++...+- ...++-++...+...+.+..|.
T Consensus 236 ~~i~~~~~-i~~-~~~~~--s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~-~~~~~~~l~RvI~~~~~~~~p~ 310 (728)
T KOG4535|consen 236 WLIRLCIS-IVV-LPKED--SCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSM-TQAYLMELGRVICKCMGEADPS 310 (728)
T ss_pred ceeeeeee-eee-cCCcc--ccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccCCCCChH
Confidence 00000000 000 00000 0000000011111 1123566666666666655432 2345555566666666666666
Q ss_pred HHHHHHHHHHHhhhhhchhHH--------------------------------------------------hhh---hhh
Q 001791 434 VRWAAINAIGQLSTDLGPDLQ--------------------------------------------------NQF---HPQ 460 (1012)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~--------------------------------------------------~~~---~~~ 460 (1012)
++..+..++..+...+..... ..+ -..
T Consensus 311 ~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T 390 (728)
T KOG4535|consen 311 IQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQT 390 (728)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchh
Confidence 666666666555443321000 000 001
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhH-
Q 001791 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ- 539 (1012)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~- 539 (1012)
..+..+...+|+.+.-++.+|..++..++-+-+......+..+-...+...+.+.....|..++.++|++..+.-..+-
T Consensus 391 ~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps 470 (728)
T KOG4535|consen 391 LCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPT 470 (728)
T ss_pred hhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCC
Confidence 2222222222212222444444444433332221122234444555556666666677899999999999877653321
Q ss_pred --hhHhhhhHH----HHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-HhcC-CCCCCCchhH
Q 001791 540 --KYYDAVMPF----LKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGS-QMETDDPTTS 611 (1012)
Q Consensus 540 --~~~~~il~~----l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~-~~~~~~~~~~ 611 (1012)
.+...+... +...-. ..+.....+|.++++.++.+...+. ....+-...+++.-.. +... ..+..-+++=
T Consensus 471 ~~s~~eR~sg~ll~~~~~~A~-~~~Ad~dkV~~navraLgnllQvlq-~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W 548 (728)
T KOG4535|consen 471 PDSFQERFSGLLLLKMLRSAI-EASADKDKVKSNAVRALGNLLQFLQ-PIEKPTFAEIIEESIQALISTVLTEAAMKVRW 548 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHH-HhhhhhhhhhhHHHHHHhhHHHHHH-HhhhccHHHHHHHHHHhcccceecccccccch
Confidence 122333322 222211 1233456788999999988876554 1222233444443222 2111 1111123444
Q ss_pred HHHHHHHHHHHHh--cCCcccchhhhhHHHHHHhccCCCccc
Q 001791 612 YMLQAWARLCKCL--GQDFLPYMSVVMPPLLQSAQLKPDVTI 651 (1012)
Q Consensus 612 ~~~~~~~~l~~~~--~~~~~~~l~~i~~~ll~~~~~~~~~~~ 651 (1012)
-+..+++++.+.- +-+-.++.+.+.+.|+..+....|.++
T Consensus 549 NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV 590 (728)
T KOG4535|consen 549 NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV 590 (728)
T ss_pred HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence 4555666665432 222347888888988888765555443
No 97
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.0047 Score=69.01 Aligned_cols=249 Identities=14% Similarity=0.162 Sum_probs=157.3
Q ss_pred ChhHHHHHHHHhcCC-ChHHHHHHHHHHHHhh---hc-----Cc-hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCC
Q 001791 20 DSAPFETLISHLMST-SNEQRSEAELLFNLCK---QQ-----DP-DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDD 89 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~-d~~~r~~A~~~L~~~~---~~-----~p-~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~ 89 (1012)
....+.++|++++.. |.-..-+|..+|-++. ++ -| ..+++.|+.++....+..+..+|...|..+...-+
T Consensus 165 asSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 165 ASSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLP 244 (1051)
T ss_pred chHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhcc
Confidence 445788999999876 7767777777765422 11 12 34689999999888889999999999999876531
Q ss_pred CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-----CCcchHHHHHHHhhcCCCHHHHHHHH
Q 001791 90 SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-----NGWPELLPFMFQCVSSDSVKLQESAF 164 (1012)
Q Consensus 90 ~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-----~~~~~ll~~l~~~~~~~~~~~r~~al 164 (1012)
. ....-+.+.....|++.|..-.--.+..+..+++..|.+.. |. +.....+.+| .==....+..|+
T Consensus 245 ~----S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL~AG~l~a~Lsyl----DFFSi~aQR~Al 315 (1051)
T KOG0168|consen 245 R----SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PKAILQAGALSAVLSYL----DFFSIHAQRVAL 315 (1051)
T ss_pred c----hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHHhcccHHHHHHHH----HHHHHHHHHHHH
Confidence 1 00000111123455555554344556777777888776643 21 2222222111 111245667788
Q ss_pred HHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH-HHHHHHHHHHHhcC
Q 001791 165 LIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLNNG 243 (1012)
Q Consensus 165 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~~~ 243 (1012)
-+...+|..+..+-..++...+|++.+.|+.. +.+.-..+.-|+..++..+.+ .++.++++. +.+++.+.+++.-.
T Consensus 316 aiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h--~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 316 AIAANCCKSIRSDEFHFVMEALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQH--GPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhccc--ChHHHHHHhchhHHHHHHHHHhcC
Confidence 88899999887654557888899999999987 888888999999999987643 344454433 24555555555322
Q ss_pred ----ChHHHHHHHHHHHHHHccchHHHHHhHH-HHHHHHHHh
Q 001791 244 ----NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQI 280 (1012)
Q Consensus 244 ----~~~~~~~~~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~ 280 (1012)
+.......+..|..++...+..+...+. +|...+..+
T Consensus 393 ~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~i 434 (1051)
T KOG0168|consen 393 PTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRI 434 (1051)
T ss_pred cccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHH
Confidence 2335667788888888877766555433 444444433
No 98
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.017 Score=65.34 Aligned_cols=169 Identities=16% Similarity=0.195 Sum_probs=117.5
Q ss_pred HHHHHHHhhCCCCC-----hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCC----CCChHHHHHHHHHHHHH
Q 001791 418 QVLSMVLNSFRDPH-----PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD----FQNPRVQAHAASAVLNF 488 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~----~~~~~v~~~a~~al~~l 488 (1012)
.++..+-+.+.+.. ...-.+++.++..++++++... . ..+|.+++..-. ..++.....+...++.+
T Consensus 462 ~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~-~----~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~ 536 (982)
T KOG2022|consen 462 FLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE-S----TWIPRLFETSASIKLSAPNPQLLSTSSDLIGSL 536 (982)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch-h----HHHHHHHHhccccccccCChhHHHHHHHHHHHH
Confidence 33444555554332 5556788888889998887544 3 335555544321 14677777788888887
Q ss_pred hhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHH
Q 001791 489 SENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKS 568 (1012)
Q Consensus 489 ~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a 568 (1012)
+.-+... .-|+...++.|++.+..+ +.-..+...+..++..++.++.||.+.++......+.+..- ....|.++
T Consensus 537 s~~l~e~--P~~ln~sl~~L~~~Lh~s--k~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~--~~S~~~kl 610 (982)
T KOG2022|consen 537 SNWLGEH--PMYLNPSLPLLFQGLHNS--KESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNA--KDSDRLKL 610 (982)
T ss_pred HHHHhcC--CcccCchHHHHHHHhcCc--hHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccccc--CchHHHHH
Confidence 7766532 245666667777776543 33456677799999999999999999999999998876322 23356778
Q ss_pred HHHHHHHHhhhChhhhhhhHHHHHHHHHH
Q 001791 569 MECISLVGMAVGKDKFRDDAKQVMEVLMS 597 (1012)
Q Consensus 569 ~~~l~~l~~~~~~~~~~~~~~~i~~~l~~ 597 (1012)
+.++|.+.....++....|+..++..++.
T Consensus 611 m~sIGyvls~~~pEe~~kyl~~lin~il~ 639 (982)
T KOG2022|consen 611 MKSIGYVLSRLKPEEIPKYLMKLINPILS 639 (982)
T ss_pred HHHHHHHHHhccHHhHHHHHHHHHHHHHH
Confidence 99999999888778888888888887776
No 99
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.015 Score=64.24 Aligned_cols=354 Identities=12% Similarity=0.162 Sum_probs=180.4
Q ss_pred hcCCChHHHHHHHHHHHHhhhcCc-hHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHH
Q 001791 31 LMSTSNEQRSEAELLFNLCKQQDP-DSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLL 109 (1012)
Q Consensus 31 ~~s~d~~~r~~A~~~L~~~~~~~p-~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll 109 (1012)
++.||.=+|-..-+.|-.++++.- +.+.+...+.+ .+..+.||+.|...+..+.+.. ..+=++..+-+ -
T Consensus 108 LQHPNEyiRG~TLRFLckLkE~ELlepl~p~Iracl-eHrhsYVRrNAilaifsIyk~~-----~~L~pDapeLi----~ 177 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACL-EHRHSYVRRNAILAIFSIYKNF-----EHLIPDAPELI----E 177 (948)
T ss_pred ccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHH-hCcchhhhhhhheeehhHHhhh-----hhhcCChHHHH----H
Confidence 566666677777777766665200 11223333333 3556788888877777776652 23333333322 2
Q ss_pred HHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcC---CCHHHHHHHHHHHHHhhhhHhhhccccHHHHH
Q 001791 110 QSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS---DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (1012)
Q Consensus 110 ~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~---~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 186 (1012)
..|..+.++.-++.+-..+-..-. ..-+..+..++.+ =++......+..+...|..-+.. -...+
T Consensus 178 ~fL~~e~DpsCkRNAFi~L~~~D~--------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~----~~~~i 245 (948)
T KOG1058|consen 178 SFLLTEQDPSCKRNAFLMLFTTDP--------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE----KARYI 245 (948)
T ss_pred HHHHhccCchhHHHHHHHHHhcCH--------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH----hhHHH
Confidence 233335566655544333322110 1112223222221 11222223333344443322221 23445
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHH
Q 001791 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1012)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~ 266 (1012)
..+.+.|.++ ++.|+..|...+..+.. .+..+..-...++..+. ..++..+.-..+.-|.++.......+
T Consensus 246 ~~i~~lL~st-ssaV~fEaa~tlv~lS~------~p~alk~Aa~~~i~l~~---kesdnnvklIvldrl~~l~~~~~~il 315 (948)
T KOG1058|consen 246 RCIYNLLSST-SSAVIFEAAGTLVTLSN------DPTALKAAASTYIDLLV---KESDNNVKLIVLDRLSELKALHEKIL 315 (948)
T ss_pred HHHHHHHhcC-CchhhhhhcceEEEccC------CHHHHHHHHHHHHHHHH---hccCcchhhhhHHHHHHHhhhhHHHH
Confidence 5666666665 66676655554443332 12222221112222222 22344455555555665554444444
Q ss_pred HHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCC
Q 001791 267 RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETED 346 (1012)
Q Consensus 267 ~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ 346 (1012)
..++-+++. .+ ...+-++|..++++...++... -+..++..+-..+.+..+.
T Consensus 316 ~~l~mDvLr----vL--ss~dldvr~Ktldi~ldLvssr------------Nvediv~~Lkke~~kT~~~---------- 367 (948)
T KOG1058|consen 316 QGLIMDVLR----VL--SSPDLDVRSKTLDIALDLVSSR------------NVEDIVQFLKKEVMKTHNE---------- 367 (948)
T ss_pred HHHHHHHHH----Hc--CcccccHHHHHHHHHHhhhhhc------------cHHHHHHHHHHHHHhcccc----------
Confidence 444444444 33 2346678999999988888741 2244444444433332110
Q ss_pred ccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh
Q 001791 347 EDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS 426 (1012)
Q Consensus 347 ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 426 (1012)
|.++....+....+.+...+..++ ++...+++.+.+++.|.+...-...+.-+....+..+..- ..++..++..
T Consensus 368 e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr----~~ii~~l~~~ 441 (948)
T KOG1058|consen 368 ESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLR----ASIIEKLLET 441 (948)
T ss_pred ccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHH----HHHHHHHHHh
Confidence 001122334455666777776675 6777889999999999988777666666666666555322 2233444433
Q ss_pred CC-CCChhHHHHHHHHHHHhhhhhc
Q 001791 427 FR-DPHPRVRWAAINAIGQLSTDLG 450 (1012)
Q Consensus 427 l~-d~~~~vr~~a~~~l~~l~~~~~ 450 (1012)
+. =.++.+...|+|.+|.+++...
T Consensus 442 ~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 442 FPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhhcccccchhHHHHHHHHHhhhH
Confidence 32 2356677899999999998764
No 100
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.25 E-value=0.00013 Score=75.47 Aligned_cols=204 Identities=12% Similarity=0.195 Sum_probs=145.4
Q ss_pred HHHHHHHHhhCCCChhHHHHHHH-HHHHHHhhcHHHHHHhHHHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhchhHH
Q 001791 377 VASEQLPAYLAAPEWQKHHAALI-ALAQIAEGCAKVMVKNLEQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGPDLQ 454 (1012)
Q Consensus 377 ~~~~~l~~~l~~~~~~~r~aal~-~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1012)
.+...+.+.-.+.....|..|+. ..+.+.++.-.....|+.+|+..++..|+| .+...|..|++.|+.+++.-+..+
T Consensus 287 ~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l- 365 (516)
T KOG2956|consen 287 LVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL- 365 (516)
T ss_pred HHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh-
Confidence 34444444444556677777777 445556666667778999999999999999 789999999999999998876665
Q ss_pred hhhhhhhHHHHHhhcCCCCChHH-HHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001791 455 NQFHPQVLPALAGAMDDFQNPRV-QAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1012)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v-~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 533 (1012)
..+.+..+..+++.-.| .++.| +.++-.++..+..+.+.. -+..|.+.++ ..+...-..++.++..+...
T Consensus 366 ~DstE~ai~K~Leaa~d-s~~~v~~~Aeed~~~~las~~P~~----~I~~i~~~Il----t~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 366 FDSTEIAICKVLEAAKD-SQDEVMRVAEEDCLTTLASHLPLQ----CIVNISPLIL----TADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hchHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHhhCchh----HHHHHhhHHh----cCcchHHHHHHHHHHHHHhh
Confidence 56777778888888777 55544 444444455554444421 2233333333 34545555677788888877
Q ss_pred hH-hhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHH
Q 001791 534 SQ-EHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEV 594 (1012)
Q Consensus 534 ~~-~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~ 594 (1012)
+. +.+.+.++.++|.+++...+ ....+|..++-|+-.+...+|-+.+.||+.++-..
T Consensus 437 l~~EeL~~ll~diaP~~iqay~S----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 437 LSAEELLNLLPDIAPCVIQAYDS----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred cCHHHHHHhhhhhhhHHHHHhcC----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 76 46778899999999998754 34568999999999999999988899998775443
No 101
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.19 E-value=5.6e-05 Score=87.04 Aligned_cols=208 Identities=14% Similarity=0.228 Sum_probs=165.7
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhc
Q 001791 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLG 450 (1012)
Q Consensus 372 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1012)
.++.+.+-+.+...+.|.+|+.|..|+..+..+.+... +....+...+...+-..+.|.|..|...|+.+|..++..++
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 46677777888888899999999999999998887665 22333444455556667789999999999999999999999
Q ss_pred hhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001791 451 PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1012)
Q Consensus 451 ~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l 530 (1012)
..+ .+|...++|.++..+.+ ..+.++..+..++..++.. ..+..+.+.+...+.+.++.++......++..
T Consensus 328 ~~~-~~~~~~v~p~lld~lke-kk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 328 PLF-RKYAKNVFPSLLDRLKE-KKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred hhh-HHHHHhhcchHHHHhhh-ccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 887 78999999999999999 8889999998888888772 34466677778888899999999999888888
Q ss_pred HHHhHh--hhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHH
Q 001791 531 ADSSQE--HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1012)
Q Consensus 531 ~~~~~~--~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~ 592 (1012)
....+. .+..-+..+.|.+.....+ -+..+|..+.++++.+.+.+|.+.+..++..+-
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D----~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHIND----TDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccC----CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 877663 2334556778888777543 455799999999999999999776666655544
No 102
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.0018 Score=72.18 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=132.5
Q ss_pred hHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhch
Q 001791 375 VPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 375 ~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
...++|.+..++++ .+.....-|+.++..+.+.++....-.+. ..+|.++..| .=+.-.|.+.++.++..++...+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 34566777777776 56888899999999999999875543332 2566666554 345677888999999999987765
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
.+.. ..-+-..+..|.= -.-.+|..|+....+.|..+.++.+ .|+-..+|.|..+++..+.+..+.++.|+..++
T Consensus 289 AiL~---AG~l~a~LsylDF-FSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 289 AILQ---AGALSAVLSYLDF-FSIHAQRVALAIAANCCKSIRSDEF-HFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHh---cccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 5421 1122233333322 2346788999999999999988776 566778899999999999999999999999998
Q ss_pred HHhHh---hhHhhH-hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhh
Q 001791 532 DSSQE---HFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1012)
Q Consensus 532 ~~~~~---~~~~~~-~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 578 (1012)
..+.. .+...+ ..++....+++......-...+....+..+..++..
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~ 414 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG 414 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC
Confidence 87653 333332 345555556554322211233444455566555443
No 103
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=98.14 E-value=0.031 Score=63.87 Aligned_cols=138 Identities=14% Similarity=0.152 Sum_probs=106.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001791 22 APFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1012)
Q Consensus 22 ~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1012)
.=+..++.++.+.|.+.++--.-+|..+.+.+|+..+..+-.+..+ +.++.+|.+|...+..+=. ++
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~-----------~e 123 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV-----------KE 123 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh-----------HH
Confidence 3455667778888999999999999999998887654444444443 8899999999998887521 33
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcch--HHHHHHHhhcCCCHHHHHHHHHHHHHhhhh
Q 001791 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPE--LLPFMFQCVSSDSVKLQESAFLIFAQLSQY 173 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~--ll~~l~~~~~~~~~~~r~~al~~l~~l~~~ 173 (1012)
....+...+.+.+.+ +.+.||+.++.++..+.+.+- .-.++ +...+..++.+++|.+...|+..+..+...
T Consensus 124 l~~~~~~~ik~~l~d-~~ayVRk~Aalav~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 LLGNIIDPIKKLLTD-PHAYVRKTAALAVAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 445666677777776 899999999999999987542 34444 456667777899999999999999988776
No 104
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.14 E-value=0.0084 Score=68.90 Aligned_cols=472 Identities=14% Similarity=0.190 Sum_probs=239.5
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1012)
+.+.+...++.++.. ...+.+|+..+-++.. +|+.. -+++.+ .. ..-.|-+.++.. |.+ +.+
T Consensus 121 ~~~~~d~yiE~lYe~-~~ek~~~~~~il~La~-~~~NL----~~l~~n---e~----l~~aL~RvLred----~~k-s~~ 182 (708)
T PF05804_consen 121 SINDLDEYIELLYED-IPEKIRGTSLILQLAR-NPENL----EELVQN---ET----LMSALARVLRED----WKK-SVE 182 (708)
T ss_pred CHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhC-CcchH----HHHHHh---HH----HHHHHHHHHHHH----hhh-hHH
Confidence 457888899999974 4556677788888888 78653 222221 11 223344444443 554 333
Q ss_pred HHHHHHHHHHHHHhhc---chHhHHHHHHHHHHHHHhcccCC-CCcc---------------------hHHHHHHHhhcC
Q 001791 100 TQSSLKSMLLQSIQLE---SAKSISKKLCDTVSELASNILPE-NGWP---------------------ELLPFMFQCVSS 154 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~---~~~~vr~~~~~~l~~i~~~~~~~-~~~~---------------------~ll~~l~~~~~~ 154 (1012)
....|...++. +.+- ..--.+..++...-.++.++... ..|. ...+.+..++..
T Consensus 183 l~tnI~~iF~~-fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~k 261 (708)
T PF05804_consen 183 LATNIIYIFFC-FSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRK 261 (708)
T ss_pred HHHHHHHHHHH-HHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHH
Confidence 33333322221 1110 01111222222222222222211 1332 222233333333
Q ss_pred CCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHH
Q 001791 155 DSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMR 234 (1012)
Q Consensus 155 ~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ 234 (1012)
++ ..-..++.+|..+++.......-.-..+++.+..+|..+ +.++...++.+|.++.-+.++ ....... .+++
T Consensus 262 Qe-qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~EN--K~~m~~~---giV~ 334 (708)
T PF05804_consen 262 QE-QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKEN--KDEMAES---GIVE 334 (708)
T ss_pred HH-HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHH--HHHHHHc---CCHH
Confidence 22 333466777888887655443334466778888888887 889999999999888765322 1111111 3555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHH--HHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhh
Q 001791 235 TLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMM 312 (1012)
Q Consensus 235 ~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 312 (1012)
.+...+.+++.+.+..++++|..+..... ..+.+- .+++.+...+.+ +..+..++.+++.++..++... +
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d----~~~~~val~iLy~LS~dd~~r~-~- 406 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKD----PNFREVALKILYNLSMDDEARS-M- 406 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCC----CchHHHHHHHHHHhccCHhhHH-H-
Confidence 56666677788899999999998865332 222222 355555555532 3456667888888776421111 1
Q ss_pred hcchhhHHHHHHHHHHhhccCCCCcc-----c-------cCCCCC-CccccC---------CcchhhHHHHHHHHHHHcC
Q 001791 313 RKLPQFINRLFAILMSMLLDIEDDPL-----W-------HSAETE-DEDAGE---------SSNYSVGQECLDRLAIALG 370 (1012)
Q Consensus 313 ~~~~~~~~~l~~~l~~~l~~~~~~~~-----~-------~~~~~~-~ed~~~---------~~~~~~a~~~l~~l~~~~~ 370 (1012)
+ .....+|.++..+....+... + .....+ -.+... ........+++..++.+-|
T Consensus 407 --f--~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 407 --F--AYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDG 482 (708)
T ss_pred --H--hhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1 112345555554433211100 0 000000 000000 0000112344455554432
Q ss_pred CCcchHHHHHHHH---HhhCCCChhHHHHHHHHHHHHHhhcH--HHHHHhHH--HHHHHHHhhCCCC--ChhHHHHHHHH
Q 001791 371 GNTIVPVASEQLP---AYLAAPEWQKHHAALIALAQIAEGCA--KVMVKNLE--QVLSMVLNSFRDP--HPRVRWAAINA 441 (1012)
Q Consensus 371 ~~~~~~~~~~~l~---~~l~~~~~~~r~aal~~l~~l~~~~~--~~~~~~l~--~i~~~l~~~l~d~--~~~vr~~a~~~ 441 (1012)
+ .-..+.+++. ..+.+.+ .-+..+.++|.++.-.. ......+. .++|.+...|... .+.+.-.+...
T Consensus 483 ~--~k~~f~~~i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 483 P--LKELFVDFIGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred h--HHHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 1 1112222222 2233322 23456666666665321 12223332 4667777766433 34566677788
Q ss_pred HHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-CChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHH
Q 001791 442 IGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1012)
Q Consensus 442 l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~ 520 (1012)
+|.++..-.... .-.-..+++.+++.++.. .+.......+.++.+++.+-......-.-..+...++.++.+.+..+|
T Consensus 559 ~gtla~d~~~A~-lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir 637 (708)
T PF05804_consen 559 LGTLASDPECAP-LLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIR 637 (708)
T ss_pred HHHHHCCHHHHH-HHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHH
Confidence 888775422111 011246677777776541 245566778888888887643211111113577888999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 001791 521 EGALTALASVADSS 534 (1012)
Q Consensus 521 ~~a~~~l~~l~~~~ 534 (1012)
..+-.|+.-++...
T Consensus 638 ~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 638 KVCDNALDIIAEYD 651 (708)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888887777654
No 105
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=0.027 Score=62.82 Aligned_cols=364 Identities=14% Similarity=0.140 Sum_probs=199.9
Q ss_pred CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCc
Q 001791 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1012)
Q Consensus 140 ~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~ 219 (1012)
.-.+++=.+..++++.+...|+..-.+++.+.....+. -.+...+++-+... ++..|..|+++|..++..-
T Consensus 61 eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv-----iivtsslmkD~t~~-~d~yr~~AiR~L~~I~d~~--- 131 (865)
T KOG1078|consen 61 EATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV-----IIVTSSLMKDMTGK-EDLYRAAAIRALCSIIDGT--- 131 (865)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh-----hhhhHHHHhhccCC-CcchhHHHHHHHHhhcCcc---
Confidence 34567777888899999888887777777665543332 22334444444443 6778888888887766531
Q ss_pred chHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Q 001791 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1012)
Q Consensus 220 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~ 299 (1012)
.++.+-..+.+++-+.++.+...++-.=..+..............+.+.. .+.+.-+..-|+.++.
T Consensus 132 --------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~------~s~~~m~QyHalglLy 197 (865)
T KOG1078|consen 132 --------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAV------NSDNIMVQYHALGLLY 197 (865)
T ss_pred --------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhcc------CcHHHHHHHHHHHHHH
Confidence 12233344445555555555544432222222333333333333333311 1112234555677777
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHH
Q 001791 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1012)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 379 (1012)
.+-++.+ -.+.+++..+... ...++ + ..+-.-+.+..+++.- ......++
T Consensus 198 qirk~dr----------la~sklv~~~~~~---~~~~~-~----------A~~~lir~~~~~l~~~------~~~~s~~~ 247 (865)
T KOG1078|consen 198 QIRKNDR----------LAVSKLVQKFTRG---SLKSP-L----------AVCMLIRIASELLKEN------QQADSPLF 247 (865)
T ss_pred HHHhhhH----------HHHHHHHHHHccc---cccch-h----------HHHHHHHHHHHHhhhc------ccchhhHH
Confidence 7655310 0112222222110 00000 0 0000011122222221 13345678
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh
Q 001791 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP 459 (1012)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 459 (1012)
+++..++.+....+-..|..++..+....+..+.+ -+..+...++.+.+.+|.+|.++|.+++...+..+ .
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-----~ 318 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-----T 318 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc-----c
Confidence 88999999888888888888877776655543333 56666677888999999999999999998765433 1
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhH
Q 001791 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ 539 (1012)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~ 539 (1012)
..=..+-..+.| .| |.-|..++..++..... .-.+.++..+.....+-+...+..+..++.+++...+..
T Consensus 319 ~cN~elE~lItd-~N---rsIat~AITtLLKTG~e----~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k-- 388 (865)
T KOG1078|consen 319 VCNLDLESLITD-SN---RSIATLAITTLLKTGTE----SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK-- 388 (865)
T ss_pred ccchhHHhhhcc-cc---cchhHHHHHHHHHhcch----hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--
Confidence 111223334444 33 34566677777765543 234556666666665555555666667777777665532
Q ss_pred hhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhC
Q 001791 540 KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1012)
Q Consensus 540 ~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1012)
...++++|...+.+ +.....+...++++..+....+
T Consensus 389 --~~~~m~FL~~~Lr~---eGg~e~K~aivd~Ii~iie~~p 424 (865)
T KOG1078|consen 389 --HTVMMNFLSNMLRE---EGGFEFKRAIVDAIIDIIEENP 424 (865)
T ss_pred --HHHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHHhCc
Confidence 23456777777754 2334556667888877765444
No 106
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.017 Score=63.04 Aligned_cols=309 Identities=15% Similarity=0.163 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhh--
Q 001791 502 DGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAV-- 579 (1012)
Q Consensus 502 ~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~-- 579 (1012)
......+..+..+.+..||..|++++-.+...++ + -..+.....+.+ .++...+|..|+..+...+...
T Consensus 197 ~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L---~~~~Y~~A~~~l----sD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--L---SKACYSRAVKHL----SDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc--c---cHHHHHHHHHHh----cchHHHHHHHHHHHHHHHHhcCCC
Confidence 3455668888888899999999998877766332 1 112223333333 2345668999999988888765
Q ss_pred ChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhH-HHHHHhcc------CCCccc-
Q 001791 580 GKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMP-PLLQSAQL------KPDVTI- 651 (1012)
Q Consensus 580 ~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~-~ll~~~~~------~~~~~~- 651 (1012)
+.+......+-.-..+.++...--+-+-.+|-.+.++++.+-.. ...++.+++. .++..+.. .|...+
T Consensus 268 ~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v----See~i~QTLdKKlms~lRRkr~ahkrpk~l~s 343 (823)
T KOG2259|consen 268 PLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV----SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYS 343 (823)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh----HHHHHHHHHHHHHhhhhhhhhhcccchHHHHh
Confidence 22222222222222222222100001122454555555544222 2222333222 12221110 010000
Q ss_pred ---------cCCCCCccccCCCCccc-chhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhcccc
Q 001791 652 ---------TSADSDNEIEDSDDDSM-ETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL 721 (1012)
Q Consensus 652 ---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l 721 (1012)
+.+|--.+.+|++++.+ .-...|....++...+.++|.+|...++.++.+.+. |..+.++.+...+
T Consensus 344 ~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~----FA~~aldfLvDMf 419 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG----FAVRALDFLVDMF 419 (823)
T ss_pred cCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----cHHHHHHHHHHHh
Confidence 10110011111112211 111123344456677788999999999999876543 4567888888888
Q ss_pred CccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCC
Q 001791 722 KFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGP 801 (1012)
Q Consensus 722 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 801 (1012)
++. .+.||..|+.+|..+..... -..++ ++.++..+.+ ..++++. ++.++++.+..
T Consensus 420 NDE-~~~VRL~ai~aL~~Is~~l~----------i~eeq--------l~~il~~L~D-~s~dvRe----~l~elL~~~~~ 475 (823)
T KOG2259|consen 420 NDE-IEVVRLKAIFALTMISVHLA----------IREEQ--------LRQILESLED-RSVDVRE----ALRELLKNARV 475 (823)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHhe----------ecHHH--------HHHHHHHHHh-cCHHHHH----HHHHHHHhcCC
Confidence 875 68899999999998887641 12233 3444455533 3566764 45555555433
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHH
Q 001791 802 LLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDE 881 (1012)
Q Consensus 802 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 881 (1012)
-+.+.+..++..+...|...-+ | ++.+..|++.+.+.++..+...+..
T Consensus 476 -~d~~~i~m~v~~lL~~L~kyPq--------------D-----------------rd~i~~cm~~iGqnH~~lv~s~m~r 523 (823)
T KOG2259|consen 476 -SDLECIDMCVAHLLKNLGKYPQ--------------D-----------------RDEILRCMGRIGQNHRRLVLSNMGR 523 (823)
T ss_pred -CcHHHHHHHHHHHHHHhhhCCC--------------C-----------------cHHHHHHHHHHhccChhhHHHHHHH
Confidence 2456777787777777766422 1 1147899999999998776655544
Q ss_pred HH
Q 001791 882 LS 883 (1012)
Q Consensus 882 ll 883 (1012)
++
T Consensus 524 fl 525 (823)
T KOG2259|consen 524 FL 525 (823)
T ss_pred HH
Confidence 43
No 107
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.027 Score=61.85 Aligned_cols=317 Identities=14% Similarity=0.158 Sum_probs=186.2
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhh-HhhhccccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHhh
Q 001791 151 CVSSDSVKLQESAFLIFAQLSQY-IGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDL 228 (1012)
Q Consensus 151 ~~~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~ 228 (1012)
-+.+.++.....|+.+++.+... +.+.+ ...+-.++. ++ ...-||..|.-|+..+.+..++.... .
T Consensus 119 DL~srn~~fv~LAL~~I~niG~re~~ea~---~~DI~KlLv----S~~~~~~vkqkaALclL~L~r~spDl~~~---~-- 186 (938)
T KOG1077|consen 119 DLSSRNPTFVCLALHCIANIGSREMAEAF---ADDIPKLLV----SGSSMDYVKQKAALCLLRLFRKSPDLVNP---G-- 186 (938)
T ss_pred hhhcCCcHHHHHHHHHHHhhccHhHHHHh---hhhhHHHHh----CCcchHHHHHHHHHHHHHHHhcCccccCh---h--
Confidence 34456777778899999888764 33332 333333433 33 35788999999999999875432111 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCC-----------cchHHHHHHHHH
Q 001791 229 LPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES-----------LEEGTRHLAIEF 297 (1012)
Q Consensus 229 ~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~-----------~~~~vr~~a~~~ 297 (1012)
.+.+.+...+.+.+..+...+..++..++...++.....++..+..+..++...+ +.+-+....+.+
T Consensus 187 --~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl 264 (938)
T KOG1077|consen 187 --EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL 264 (938)
T ss_pred --hHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence 3555666777777777777888888888888877766666555555544442221 122233333333
Q ss_pred HHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcch-hhHHHHHHHHHHHcCCCcchH
Q 001791 298 VITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNY-SVGQECLDRLAIALGGNTIVP 376 (1012)
Q Consensus 298 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~-~~a~~~l~~l~~~~~~~~~~~ 376 (1012)
+..+-. | .-+.....+...+-..+....+-+.-... ...... ....+++......-+.+..+.
T Consensus 265 Lq~~p~-----~----~D~~~r~~l~evl~~iLnk~~~~~~~k~v-------q~~na~naVLFeaI~l~~h~D~e~~ll~ 328 (938)
T KOG1077|consen 265 LQIYPT-----P----EDPSTRARLNEVLERILNKAQEPPKSKKV-------QHSNAKNAVLFEAISLAIHLDSEPELLS 328 (938)
T ss_pred HHhCCC-----C----CCchHHHHHHHHHHHHHhccccCccccch-------HhhhhHHHHHHHHHHHHHHcCCcHHHHH
Confidence 333211 1 00111222333322222222111100000 000000 111223322222222345666
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHh
Q 001791 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1012)
Q Consensus 377 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1012)
.....+.+++.+.+...|+-|+..+..++..-. ....+..-...++..|+ +.+..||+.|...|-.+++.
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~------- 399 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSEF--SIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV------- 399 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhccc--hHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-------
Confidence 777888889999999999999998888876522 11223333566667777 78899999999999988863
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l 508 (1012)
.....|+..+++.|.. -++.+|+....=+.-+.+.+.++ ...|.+-+++.+
T Consensus 400 ~Nak~IV~elLqYL~t-Ad~sireeivlKvAILaEKyAtD-y~WyVdviLqLi 450 (938)
T KOG1077|consen 400 SNAKQIVAELLQYLET-ADYSIREEIVLKVAILAEKYATD-YSWYVDVILQLI 450 (938)
T ss_pred hhHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHhcCC-cchhHHHHHHHH
Confidence 3556788888888877 77888888887777888887754 567766665544
No 108
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.09 E-value=2.9e-05 Score=72.36 Aligned_cols=128 Identities=22% Similarity=0.331 Sum_probs=97.1
Q ss_pred HhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh----------------hcccc
Q 001791 118 KSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD----------------TLTPH 181 (1012)
Q Consensus 118 ~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~----------------~~~~~ 181 (1012)
+.+++.++.+++.++.+++| ..||++++.+.+.+++ ++......+.+|..+.+++.+ .+...
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P-~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWP-QQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHCh-hhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 56899999999999999999 6999999999999988 477778899999999888653 12335
Q ss_pred HHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001791 182 LKHLHAVFLNCLTNSNN---PDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1012)
Q Consensus 182 ~~~l~~~l~~~l~~~~~---~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L 255 (1012)
.+.++..+.+.+....+ ..+...+++|+.+++.+.+ ...+.. ..+++.+++.++ +++.+..|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~----~~~i~~--~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP----IELIIN--SNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-----HHHHHS--SSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC----HHHhcc--HHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 67778888877766522 7889999999999998762 333222 136666677664 445688888876
No 109
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.0062 Score=60.17 Aligned_cols=292 Identities=15% Similarity=0.201 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh-hccc----cHHHHHHHHHHhhcCCCC
Q 001791 124 LCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-TLTP----HLKHLHAVFLNCLTNSNN 198 (1012)
Q Consensus 124 ~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~----~~~~l~~~l~~~l~~~~~ 198 (1012)
...++.++.+...+...-|.++|.|+..+..++..++..++..++.+.+..+. .... .-..+++.++.++... +
T Consensus 63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge-d 141 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-D 141 (524)
T ss_pred HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-c
Confidence 55677777776666557789999999999999999999999999999987652 2111 2357888999999887 8
Q ss_pred hHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHH-HHHHH--HHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHH-HHH
Q 001791 199 PDVKIAALNAVINFIQCLTSSADRDRFQDLLPL-MMRTL--TESLNNGNEATAQEALELLIELAGTEPRFLRRQLV-DVV 274 (1012)
Q Consensus 199 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~~l--~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~-~i~ 274 (1012)
.+|-++|++.+..+..+- ..+.-++|. ++.-+ ......-+.-.|..+++++.++.+..+......-. .++
T Consensus 142 deVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLl 215 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLL 215 (524)
T ss_pred HHHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHH
Confidence 999999999998887642 111111110 00000 00001113446777888888887777655443222 345
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhH--HHHHHHHHHhhccCCCCccccCCCCCCccccCC
Q 001791 275 GSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGES 352 (1012)
Q Consensus 275 ~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~ 352 (1012)
..+..-++ ...+.-++..++++...++.+.. ..+|+ +.++..+.+.+.-.+.+| +
T Consensus 216 dlLeaElk-GteDtLVianciElvteLaeteH--------greflaQeglIdlicnIIsGadsdP--------------f 272 (524)
T KOG4413|consen 216 DLLEAELK-GTEDTLVIANCIELVTELAETEH--------GREFLAQEGLIDLICNIISGADSDP--------------F 272 (524)
T ss_pred HHHHHHhc-CCcceeehhhHHHHHHHHHHHhh--------hhhhcchhhHHHHHHHHhhCCCCCc--------------H
Confidence 54444332 12344578889999999988531 11222 345665555554333222 1
Q ss_pred cchhhHHHHHHHHHHHcCCCc--------c---hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHH
Q 001791 353 SNYSVGQECLDRLAIALGGNT--------I---VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQV 419 (1012)
Q Consensus 353 ~~~~~a~~~l~~l~~~~~~~~--------~---~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i 419 (1012)
+.+ ..+.-+++.+|... + ++..+....+++..+++....+|+.++|.+..+... .....-+.-
T Consensus 273 ekf----ralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 273 EKF----RALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred HHH----HHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 111 12222223333221 1 222333344566778999999999999999876543 222222333
Q ss_pred HHHHHhhCCCCCh-hHHHHHHHHHHHhhhhh
Q 001791 420 LSMVLNSFRDPHP-RVRWAAINAIGQLSTDL 449 (1012)
Q Consensus 420 ~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~ 449 (1012)
...++....|.+. .-+.++..++..++..+
T Consensus 349 aehllarafdqnahakqeaaihaLaaIagel 379 (524)
T KOG4413|consen 349 AEHLLARAFDQNAHAKQEAAIHALAAIAGEL 379 (524)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence 3444444444443 34567788888877654
No 110
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.037 Score=61.78 Aligned_cols=389 Identities=15% Similarity=0.155 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhh-----cCC-hhHHHHHHHHHHHHHHHhHh--hhHhhHh-hh
Q 001791 475 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQ-----NGK-QMVQEGALTALASVADSSQE--HFQKYYD-AV 545 (1012)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~-----~~~-~~v~~~a~~~l~~l~~~~~~--~~~~~~~-~i 545 (1012)
..+|-.|-.....+++..+ +.+.|++-.++..-.++.. +-+ --.+.++..++|..+....+ +|..++. .+
T Consensus 411 y~lRPCaE~L~~~lF~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~l 489 (978)
T KOG1993|consen 411 YNLRPCAEKLYKDLFDAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEAL 489 (978)
T ss_pred eccchhHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhh
Confidence 3456666666666666665 4455555544444333331 111 23456667777777777665 3556553 45
Q ss_pred hHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHh-
Q 001791 546 MPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCL- 624 (1012)
Q Consensus 546 l~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~- 624 (1012)
+|-+. + .....+.+|.++.-.+|.....--+....|. ++..++++... ..|-.++-.+.+++..++.-.
T Consensus 490 lpEl~----~-~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l---~Y~a~lnLL~d--~~D~vV~Ltt~~tlkl~vDD~n 559 (978)
T KOG1993|consen 490 LPELA----N-DHGNSRIIRRRVAWILGQWVSVQQKLELKPL---LYCAFLNLLQD--QNDLVVRLTTARTLKLVVDDWN 559 (978)
T ss_pred CHHhh----h-cccchhHHHHHHHHHHhhhhheechHhHHHH---HHHHHHHhcCc--cccceeehHHHHHHHHhhhhcc
Confidence 56555 1 2335677888887777776542222223332 44555554332 123345555566666665443
Q ss_pred --cCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHh
Q 001791 625 --GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL 702 (1012)
Q Consensus 625 --~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~ 702 (1012)
.+.|.||++.+...+++.+..- ...+.|..-+.+++.++...
T Consensus 560 F~~dsFlp~lenlf~~lfkll~~~------------------------------------~e~Dtk~~VL~~ls~lI~r~ 603 (978)
T KOG1993|consen 560 FSEDSFLPYLENLFVLLFKLLKAV------------------------------------EECDTKTSVLNLLSTLIERV 603 (978)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHH------------------------------------hhhhhHHHHHHHHHHHHHHH
Confidence 4669999999888888877421 01234667788999999999
Q ss_pred hhcccccHHHHHHHhccccCccC-CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 001791 703 KEGFFPWIDQVAPTLVPLLKFYF-HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPD 781 (1012)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 781 (1012)
++.+.||...+++.+-.+-+... ++-.|.+...+|.+++.+. |+.+. .+.+..+|.+ +.-.+-..
T Consensus 604 ~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~al------g~qS~-------~~~~fL~pVI-el~~D~~s 669 (978)
T KOG1993|consen 604 SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNAL------GAQSF-------EFYPFLYPVI-ELSTDPSS 669 (978)
T ss_pred HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHh------ccCCc-------cchHHHHHHH-HHhcCCCC
Confidence 99999999888877655443322 3346777788888888876 21111 1122222322 22222222
Q ss_pred HHHHH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHH
Q 001791 782 TEICA---SMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFD 858 (1012)
Q Consensus 782 ~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~ 858 (1012)
++.+. .-+..-...+... +.++++ +-.+++.+...+..+.+ ...
T Consensus 670 P~hv~L~EDgmeLW~~~L~n~-~~l~p~-ll~L~p~l~~~iE~ste-------------------------------~L~ 716 (978)
T KOG1993|consen 670 PEHVYLLEDGMELWLTTLMNS-QKLTPE-LLLLFPHLLYIIEQSTE-------------------------------NLP 716 (978)
T ss_pred CceeehhhhHHHHHHHHHhcc-cccCHH-HHHHHHHHHHHHHhhhh-------------------------------hHH
Confidence 22221 1122222222222 334443 45566666665544321 122
Q ss_pred HHHHHHHHHHHHccccch-hhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHh-hhHhHHHHHHh--hccC
Q 001791 859 QVGEILGTLIKTFKAAFL-PFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALK-YYETYLPFLLE--ACND 934 (1012)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~~l~--~l~~ 934 (1012)
.+..++...+-..+..|. .|...+...+...+. +-..+.-...+.++.-+++.-+ .+.+ +.+.++|.+.. +.++
T Consensus 717 t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~-dvr~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~ 794 (978)
T KOG1993|consen 717 TVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD-DVRNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAEND 794 (978)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCC
Confidence 455666665555555443 444455555555552 1111222334444444444422 2222 44445555444 3467
Q ss_pred CChhHHHHHHHHHHHHHhhcCCchH
Q 001791 935 ENQDVRQAAVYGLGVCAEFGGSVVK 959 (1012)
Q Consensus 935 ~~~~vr~~a~~~lg~l~~~~~~~~~ 959 (1012)
+.|-+...-+..+|.+.-..++.|-
T Consensus 795 ~yP~~~~~yl~vvaRi~l~n~~~~m 819 (978)
T KOG1993|consen 795 KYPYVMGEYLLVVARISLRNPSLFM 819 (978)
T ss_pred CCchhHHHHHHHHHHHHhcChHHHH
Confidence 8888887777777777666665543
No 111
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.01 E-value=1.2e-05 Score=59.29 Aligned_cols=55 Identities=40% Similarity=0.530 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 001791 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1012)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1012)
|.||..|+++||.++...+... .++.+.++|.+...|+| +++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d-~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQD-DDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTS-SSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhcC
Confidence 6899999999999888777776 78999999999999999 8889999999999865
No 112
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.00 E-value=1.9e-05 Score=70.51 Aligned_cols=110 Identities=24% Similarity=0.254 Sum_probs=87.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccc
Q 001791 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1012)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l 497 (1012)
+++.+...+.+.++.+|..++++++.++...+... ..... .++|.+++.+++ +++.++..++++|.+++...+.. .
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~-~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNI-QAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDN-K 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHH-H
Confidence 57778888889999999999999999997643333 33344 899999999999 89999999999999998765421 1
Q ss_pred cCcH-HHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 498 TPYL-DGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 498 ~~~~-~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
..+. ..+++.+.+.+++.+..+++.++.++.+++
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 1122 347888999999889999999999998875
No 113
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.042 Score=59.96 Aligned_cols=146 Identities=22% Similarity=0.239 Sum_probs=107.4
Q ss_pred hhHHHHHHHHhc-CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001791 21 SAPFETLISHLM-STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1012)
Q Consensus 21 ~~~l~~ll~~~~-s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1012)
..+++.+-..++ +.|+..|.+||..|.++.. +|+ +++.+.-++..+..|.-..+|+..|-+.+..+ ..++-+
T Consensus 4 LaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~-spe-clskCqlll~~gs~pYs~mlAst~L~Klvs~~-----t~lpl~ 76 (1082)
T KOG1410|consen 4 LAQLESLCKDLYESTDPTARHRAEKALAELSE-SPE-CLSKCQLLLERGSYPYSQMLASTCLMKLVSRK-----TPLPLE 76 (1082)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcc-CHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHcCC-----CCCcHH
Confidence 456777777775 5689999999999999999 787 66777777777888999999999999999886 578999
Q ss_pred HHHHHHHHHHHHHhhc---chHhHHHHHHHHHHHHHhcccCCC-----CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 001791 100 TQSSLKSMLLQSIQLE---SAKSISKKLCDTVSELASNILPEN-----GWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~---~~~~vr~~~~~~l~~i~~~~~~~~-----~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1012)
++-.|++-+++.+... -.+.+-.++++.++++.+..|-.. .+-+.+..+.+.++.++.+....++.++..+.
T Consensus 77 qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsqLv 156 (1082)
T KOG1410|consen 77 QRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQLV 156 (1082)
T ss_pred HHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 9999999999999862 134577788889998888654321 22344555555555554444445555555554
Q ss_pred hh
Q 001791 172 QY 173 (1012)
Q Consensus 172 ~~ 173 (1012)
.+
T Consensus 157 qe 158 (1082)
T KOG1410|consen 157 QE 158 (1082)
T ss_pred HH
Confidence 43
No 114
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.97 E-value=0.00024 Score=73.62 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=129.2
Q ss_pred chHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHH-HHHhhhhhch
Q 001791 374 IVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINA-IGQLSTDLGP 451 (1012)
Q Consensus 374 ~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~ 451 (1012)
.+..++-.+.+.+.+ .+...|.-|+..|+.+..+-+..+..+.+-.+..++..-.|.++.|-..|..+ +..++.+.+
T Consensus 326 ~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P- 404 (516)
T KOG2956|consen 326 HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP- 404 (516)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc-
Confidence 344555556667776 78889999999999999998887777777778888888888887766555554 444444443
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
...+..+.|.++. . +......++..+..+++....+.+.+.+++++|.+++..++.+..||+.+.-|+-.+.
T Consensus 405 ---~~~I~~i~~~Ilt---~--D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 405 ---LQCIVNISPLILT---A--DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred ---hhHHHHHhhHHhc---C--cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 2234555555554 2 2344567788999999999988899999999999999999999999999999999999
Q ss_pred HHhH-hhhHhhHhhhhHHH
Q 001791 532 DSSQ-EHFQKYYDAVMPFL 549 (1012)
Q Consensus 532 ~~~~-~~~~~~~~~il~~l 549 (1012)
..+| +.+.||+.++-..-
T Consensus 477 ~~vG~~~mePhL~~Lt~sk 495 (516)
T KOG2956|consen 477 NRVGMEEMEPHLEQLTSSK 495 (516)
T ss_pred HHHhHHhhhhHhhhccHHH
Confidence 9999 88999998764433
No 115
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.95 E-value=0.00031 Score=67.06 Aligned_cols=111 Identities=22% Similarity=0.324 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001791 390 EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1012)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1012)
++.+|..++.++|.++...+. .++..++.+..+|+|+++.||..|+.++..+... ++ .+.-..++..++..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~-ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DM-IKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---Cc-eeehhhhhHHHHHHH
Confidence 467899999999999887664 4566778888999999999999999999998753 22 244566777888888
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHH
Q 001791 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1012)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~ 509 (1012)
.| +++.||..|..++..+.....++.+...++.++..+-
T Consensus 73 ~D-~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 73 VD-ENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99 9999999999999999988554545444444444443
No 116
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.93 E-value=0.074 Score=60.71 Aligned_cols=123 Identities=12% Similarity=0.173 Sum_probs=103.8
Q ss_pred hHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-hHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCC
Q 001791 878 FFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS 956 (1012)
Q Consensus 878 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~ 956 (1012)
+|..+.|.+...+. +.+-..|..-+..+..++.+.+.. +.|.++.++|.++++|+=+|..||-.+..++-.+....+.
T Consensus 864 fF~~ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HHHhhHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc
Confidence 45557888888774 555667888888889888887765 5789999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhHccCC
Q 001791 957 VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRDS 1004 (1012)
Q Consensus 957 ~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~~~p~~ 1004 (1012)
....|+.++++.+..+-.+++.. ...+|.-|+-|++.+.+..|..
T Consensus 943 L~t~~~~Tlvp~lLsls~~~~n~---~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDNDNN---MMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCCCcc---hhHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999987665421 3789999999999999877765
No 117
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=0.21 Score=65.79 Aligned_cols=523 Identities=16% Similarity=0.133 Sum_probs=254.7
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 001791 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATAQEALELLI 256 (1012)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~~~~~~~L~ 256 (1012)
+.|+++-++..+.-+|+. +++++..+++.|.-++.....+.-...+.+..+.+++.++..+... +...-..|+++|+
T Consensus 715 Llpylp~LM~PLv~aLkg--s~~lvsQgLRtlelcvDnltPefL~~~mepv~~~lmqaLw~~l~~~~~~s~s~~a~rILG 792 (3550)
T KOG0889|consen 715 LLPYLPLLMKPLVFALKG--SPELVSQGLRTLELCVDNLTPEFLDPIMEPVRDDLMQALWSHLRPVPNYSYSHRALRILG 792 (3550)
T ss_pred hhhhhhhhhhHHHHHhcC--CHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 457788888888888876 6899999999999999887322223335556677888888877653 6678889999999
Q ss_pred HHHccchHHHHH-----------------------------hHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhc
Q 001791 257 ELAGTEPRFLRR-----------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (1012)
Q Consensus 257 ~l~~~~~~~~~~-----------------------------~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 307 (1012)
.+......++.+ .+.+.+...+..+.....+...|.++...+.......-.
T Consensus 793 KlgG~NRq~l~~~q~l~~~~~~~~~~~l~~s~~~~~~~~~lp~~~~i~sA~~~l~s~~~d~~~~~qa~~~l~~~~~~~~~ 872 (3550)
T KOG0889|consen 793 KLGGRNRQFLKRPQDLEEIDEDDIDIRLVFSFKGLAHPLLLPLSKLIRSAFDALVSPNSDPFYRKQAFKYLRCDLLLMVN 872 (3550)
T ss_pred hhcCcchhhcccccccccccCccccceEEEeccccCccccCchHHHHHHHHHHHhCccCCcchHHHHHHHHHHHHHHHHh
Confidence 998766433221 122334444444433334555666666655544332100
Q ss_pred cchhhhcchhhHHHHHHHHHHh---hccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHH
Q 001791 308 APGMMRKLPQFINRLFAILMSM---LLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPA 384 (1012)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~---l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~ 384 (1012)
.+ ..+......+.+..... ..+......|... .......+.+..-...+..+......+++.+...+.+..
T Consensus 873 ~~---~~~~~~~~~l~~~~~~~i~~~~e~~~~n~~~~~---~~~~~~~a~~~~~~~~l~~~~~a~~~~elr~~a~~~~~~ 946 (3550)
T KOG0889|consen 873 LS---ADFKSSIRQLLTLVVWSIDLRLECCEINLDLTE---RYKSQDYSDRSIFVNALISLFYATSCKELRDEAQDFLEA 946 (3550)
T ss_pred hh---ccchhhHHHHHHhhcchHHHhhHhhhccccccc---cccccchhHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHH
Confidence 11 01111122222222111 0000000000000 000000000111000110000000001122222222211
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcH-------HH----HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch--
Q 001791 385 YLAAPEWQKHHAALIALAQIAEGCA-------KV----MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-- 451 (1012)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~-------~~----~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-- 451 (1012)
. .|.-++.+......... +. ..-.-..+++.+...+...+..++.++..++..+......
T Consensus 947 i-------l~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l 1019 (3550)
T KOG0889|consen 947 I-------LRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLIL 1019 (3550)
T ss_pred H-------HHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhh
Confidence 1 12222211111111000 00 0001134678999999999999999999998887664421
Q ss_pred -----hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHH----H
Q 001791 452 -----DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQE----G 522 (1012)
Q Consensus 452 -----~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~----~ 522 (1012)
....+.+..+++.+++...+ +.+.-+.+.+.+|..+++..+...+..+...++..+...+.+...++.. .
T Consensus 1020 ~~~~~~~~lpi~~~l~~k~~~lCy~-~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~ 1098 (3550)
T KOG0889|consen 1020 GSPERAFKLPMFEYLLEKLCHLCYD-STWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDE 1098 (3550)
T ss_pred cCcchhhccchHHHHHHHHHHHhcc-HhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHH
Confidence 11234667788888888777 7888888889999999888874444556667777777777655332222 2
Q ss_pred HHHHHHHHHHHhHh-----hhH-hhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHH
Q 001791 523 ALTALASVADSSQE-----HFQ-KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLM 596 (1012)
Q Consensus 523 a~~~l~~l~~~~~~-----~~~-~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~ 596 (1012)
+-.++-.+...+-. .-. .....++..+..-+.+ ....+|..+..++..++...|.+ ........-++++
T Consensus 1099 ~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n----pN~~VR~~~~~~L~~i~~~s~~~-v~~L~~p~K~~ll 1173 (3550)
T KOG0889|consen 1099 AKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN----PNSDVREFSQKLLRLISELSGKS-VVKLLEPFKDVLL 1173 (3550)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC----CchHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHh
Confidence 22222222221111 111 2223334334333333 23378999999999998776633 2323333333331
Q ss_pred H-HhcCCCCCC-CchhHHHHHHHHHHHHHhcCCcccchhhhhHHH--HHHhccCCCccccCCCCCccccCCCCcccchhh
Q 001791 597 S-LQGSQMETD-DPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL--LQSAQLKPDVTITSADSDNEIEDSDDDSMETIT 672 (1012)
Q Consensus 597 ~-l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (1012)
. +....+..- -...-..+.++. .|...++.+-.+-+.+.... +..+.. .++.+..+
T Consensus 1174 ~p~f~k~lr~~p~~~qig~vd~~~-fC~~l~p~~f~~~~~l~~l~~~~~~La~-------------------~~~~~~~~ 1233 (3550)
T KOG0889|consen 1174 SPIFKKPLRALPFTIQIGHLDAIT-FCLSLGPCLFDFTEELYRLKRFLIALAD-------------------AEEDELAT 1233 (3550)
T ss_pred ccccccccccCCHHHHhhhHHHHH-HHHHcCCcccCchHHHHHHHHHHHHhhh-------------------hhhhhhhh
Confidence 1 111100000 001111222222 33445666555554443321 111110 00011111
Q ss_pred c-CCceeeecchhHHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHH
Q 001791 673 L-GDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLR 742 (1012)
Q Consensus 673 ~-~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~---~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 742 (1012)
. .....+..+...--|..++++++......+. ...+|-+.++..+.+.+... ..++...+..++.....
T Consensus 1234 i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~-~~Ei~~~~~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1234 IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKR-SSELIEVALEGLRKVLA 1306 (3550)
T ss_pred hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCC-hHHHHHHHHHHHHhhhh
Confidence 0 1122233333333466777778777766543 25667778888888777643 66777777777655543
No 118
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.031 Score=63.92 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=114.1
Q ss_pred CCChHHHHHHHH-HHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHH
Q 001791 33 STSNEQRSEAEL-LFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLL 109 (1012)
Q Consensus 33 s~d~~~r~~A~~-~L~~~~~~~p~~~~~~l~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll 109 (1012)
|.+...|..|-+ -+..+...++ .-..+-.++.+ +.|.+++++.-.+|.+.-+. | |+..-.-.+.+.
T Consensus 30 s~n~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~trd~ElKrL~ylYl~~yak~-----~----P~~~lLavNti~ 98 (757)
T COG5096 30 SSNDYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVATRDVELKRLLYLYLERYAKL-----K----PELALLAVNTIQ 98 (757)
T ss_pred ccChHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-----C----HHHHHHHHHHHH
Confidence 334444555554 4556665433 22333344432 78899999999999996544 3 444444456667
Q ss_pred HHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHH
Q 001791 110 QSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVF 189 (1012)
Q Consensus 110 ~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l 189 (1012)
.-+.+ +++.+|..+.+.++.+-. + ..|+.+++.+.++++++++.+|+.|..++..+.+...+.+.. ..+..++
T Consensus 99 kDl~d-~N~~iR~~AlR~ls~l~~---~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~--~g~~~~l 171 (757)
T COG5096 99 KDLQD-PNEEIRGFALRTLSLLRV---K-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHE--LGLIDIL 171 (757)
T ss_pred hhccC-CCHHHHHHHHHHHHhcCh---H-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhc--ccHHHHH
Confidence 77776 899999998888886532 2 588999999999999999999999999999998765554221 1134455
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHh
Q 001791 190 LNCLTNSNNPDVKIAALNAVINFIQC 215 (1012)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1012)
...+.|. ++.|...|+.++..+-..
T Consensus 172 ~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 172 KELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHhhCC-CchHHHHHHHHHHHhchh
Confidence 5556776 999999998888776654
No 119
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.84 E-value=0.00012 Score=60.89 Aligned_cols=86 Identities=28% Similarity=0.401 Sum_probs=67.7
Q ss_pred HHHHHhh-CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh
Q 001791 380 EQLPAYL-AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH 458 (1012)
Q Consensus 380 ~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 458 (1012)
+.+.+.+ ++++|.+|..++.+++.+. -+..++.+...++|+++.||..|+++++.+..
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------- 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 4555666 7899999999999999432 23568888888899999999999999998742
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHH
Q 001791 459 PQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1012)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1012)
+..++.+.+.+.+.++..||..|..+|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3577788888877456677999988874
No 120
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.79 E-value=0.0043 Score=67.73 Aligned_cols=310 Identities=14% Similarity=0.164 Sum_probs=164.7
Q ss_pred HHHhhHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Q 001791 224 RFQDLLPLMMRTLTESLNN----GNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVI 299 (1012)
Q Consensus 224 ~~~~~~~~ll~~l~~~l~~----~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~ 299 (1012)
.+.+..+.+++.++..+.. +|+-+-+..++++..+-+...+.....++.+...+..+.+|+ .++..-...++.+.
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNP-snP~FnHylFEsi~ 97 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNP-SNPRFNHYLFESIG 97 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS----HHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchhhhHHHHHH
Confidence 3445566677777776643 233344455555555444444444445555555555566665 37778888899999
Q ss_pred HHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHH
Q 001791 300 TLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVAS 379 (1012)
Q Consensus 300 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~ 379 (1012)
.+++.- ..........+-..++|.+...+...-. + -.....+++..+.+..++..+-+...
T Consensus 98 ~lir~~--~~~~~~~v~~~E~~L~P~f~~ILq~dV~---------------E--F~PYvfQIla~Lle~~~~~~~p~~y~ 158 (435)
T PF03378_consen 98 ALIRFV--CEADPEAVSQFEEALFPPFQEILQQDVQ---------------E--FIPYVFQILAQLLELRPSSPLPDAYK 158 (435)
T ss_dssp HHHHHS---GGGHH---HHHHHHHHHHHHHHHTT-T---------------T--THHHHHHHHHHHHHHSS--S--TTTG
T ss_pred HHHHhc--cCCChhHHHHHHHHHHHHHHHHHHHHHH---------------H--HHHHHHHHHHHHHHcCCCCCCcHHHH
Confidence 888741 1110112334566777777766653211 1 23456778887777665333434444
Q ss_pred HHHHHhhCCCChhHH---HHHHHHHHHHHhhcHHHH--HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001791 380 EQLPAYLAAPEWQKH---HAALIALAQIAEGCAKVM--VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1012)
Q Consensus 380 ~~l~~~l~~~~~~~r---~aal~~l~~l~~~~~~~~--~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1012)
..+..++...-|+.| -+....+..+....+..+ .+++..++..+-+++.++... ..++..+..+...++....
T Consensus 159 ~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l 236 (435)
T PF03378_consen 159 QLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEAL 236 (435)
T ss_dssp GGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHH
T ss_pred HHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHH
Confidence 444455555567644 233445555554444333 256778888877777665422 4588999999999988766
Q ss_pred hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccC--------cHHHHHHHH-HHHhhc-CChhHHHHHH
Q 001791 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP--------YLDGIVSKL-LVLLQN-GKQMVQEGAL 524 (1012)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~--------~~~~il~~l-~~~l~~-~~~~v~~~a~ 524 (1012)
.+|+..++..++..|+....++....-+.++..++-..+++.+.. .+..++..+ +..++. ....-|+.+.
T Consensus 237 ~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~ 316 (435)
T PF03378_consen 237 EPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICA 316 (435)
T ss_dssp GGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHH
Confidence 899999999999999864455555555555555443333322211 122333322 222232 2234566666
Q ss_pred HHHHHHHHHhHhhhH---hhHhhhhHHHHHHHhh
Q 001791 525 TALASVADSSQEHFQ---KYYDAVMPFLKAILVN 555 (1012)
Q Consensus 525 ~~l~~l~~~~~~~~~---~~~~~il~~l~~~l~~ 555 (1012)
-++..+......-.. .....+++.+...+..
T Consensus 317 vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~ 350 (435)
T PF03378_consen 317 VGLTKLLCESPAFLSEYSQLWPPLLEALLKLLER 350 (435)
T ss_dssp HHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcC
Confidence 666665543332222 2334455555555543
No 121
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.017 Score=60.88 Aligned_cols=263 Identities=17% Similarity=0.177 Sum_probs=151.7
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH
Q 001791 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1012)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 222 (1012)
.++..+.+-..+++...|..++.+|+...+..++....+...++..+..+|-|..+.+|...++++|..+.+...+
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---- 333 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---- 333 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh----
Confidence 3444555555677889999999999999999888877788999998888888876789999999999988876532
Q ss_pred hHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch----HHHHHhHH-HHHHHHHHhhccCCcchHHHHHHHHH
Q 001791 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP----RFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEF 297 (1012)
Q Consensus 223 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~----~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~ 297 (1012)
..+..++-.+.-.+.+...+.+++.|..++..+..+..... .+|...+. ...++++.+ .+..+.+.. |+..
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl---~d~~p~va~-ACr~ 409 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL---QDPNPYVAR-ACRS 409 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee---CCCChHHHH-HHHH
Confidence 11222222233334556678889999999988888775432 22222221 233333322 233444433 3444
Q ss_pred HHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHH
Q 001791 298 VITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPV 377 (1012)
Q Consensus 298 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 377 (1012)
....+- |... -+....+++...+. . .. -........+..+ ..+.+.
T Consensus 410 ~~~~c~-----p~l~-------rke~~~~~q~~ld~-----------------~-~~--~~q~Fyn~~c~~L--~~i~~d 455 (533)
T KOG2032|consen 410 ELRTCY-----PNLV-------RKELYHLFQESLDT-----------------D-MA--RFQAFYNQWCIQL--NHIHPD 455 (533)
T ss_pred HHHhcC-----chhH-------HHHHHHHHhhhhHH-----------------h-HH--HHHHHHHHHHHHH--hhhCHH
Confidence 333332 2111 11111111110000 0 00 0111122222222 122233
Q ss_pred HHHHHH----HhhCCCChhHHHHHHHHHHHHHhhcHHHHHHh--HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001791 378 ASEQLP----AYLAAPEWQKHHAALIALAQIAEGCAKVMVKN--LEQVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1012)
Q Consensus 378 ~~~~l~----~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~--l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1012)
++-++. -++++....+|.++...-+.+..+..+..-++ ...+...+-....|+.|.++..|..+++.+..
T Consensus 456 ~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 456 ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 332222 23333344889998888888777765533333 34566777777899999999999999988753
No 122
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00079 Score=66.26 Aligned_cols=150 Identities=19% Similarity=0.271 Sum_probs=122.3
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh
Q 001791 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ 456 (1012)
Q Consensus 377 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 456 (1012)
..+......+.+.+|.....++..+..++...++.+.+.+..++-.+++.++.....|-.+|+.+++.+...+...+ ..
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i-~~ 166 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSI-DQ 166 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34444455678899999999999999999999998999999999999999999999999999999999999888777 44
Q ss_pred hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
.++.++-.|+..-.. ++.-|+..|-.+|..++.+..+. .+++.|...+++.++.+|..+..|+.......|
T Consensus 167 ~ld~lv~~Ll~ka~~-dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 167 ELDDLVTQLLHKASQ-DNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 666666666655555 57889999999999999877643 345666666778888888888888877776655
No 123
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.76 E-value=0.0031 Score=60.23 Aligned_cols=134 Identities=14% Similarity=0.301 Sum_probs=97.4
Q ss_pred hHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCC
Q 001791 117 AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS 196 (1012)
Q Consensus 117 ~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 196 (1012)
++.+|..+..+++-++.. +| +.....+|.+...+.++++.+|..|+.++..+... ++...-..++..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r-~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIR-YP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHh-Cc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCC
Confidence 367899999999988875 34 46667889999999999999999999999998764 33334566666667788998
Q ss_pred CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHHHc
Q 001791 197 NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN-----NGNEATAQEALELLIELAG 260 (1012)
Q Consensus 197 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-----~~~~~~~~~~~~~L~~l~~ 260 (1012)
++.||..|..++..+.... .++.+...+|.++..+....+ ..+.+.|...+..+...+.
T Consensus 76 -~~~Ir~~A~~~~~e~~~~~----~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 76 -NPEIRSLARSFFSELLKKR----NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred -CHHHHHHHHHHHHHHHHhc----cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 9999999999999988763 245566666666665554322 1244455555555555554
No 124
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=97.74 E-value=0.0031 Score=56.74 Aligned_cols=156 Identities=28% Similarity=0.401 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhhcch-HhHHHHHHHHHHHHHhcc--cCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhh-hhHhhhc
Q 001791 103 SLKSMLLQSIQLESA-KSISKKLCDTVSELASNI--LPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS-QYIGDTL 178 (1012)
Q Consensus 103 ~i~~~ll~~l~~~~~-~~vr~~~~~~l~~i~~~~--~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~-~~~~~~~ 178 (1012)
.||+.|+..|..+.. ...-+.++++++.++... .+.+.|++|.+.+.....+ ++ ..|+.++..+. ...++-+
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~~~-e~---~kA~~IF~~L~~~l~~efl 78 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLSEN-EP---VKAFHIFICLPMPLYGEFL 78 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhhcc-ch---HHHHHHHHhCCchhhhhHH
Confidence 478889999986422 234455566666655433 3668999999888876522 22 46888888887 4455556
Q ss_pred cccHHHHHHHHHHhhcCCCChHHH--HHHHHH-HHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 001791 179 TPHLKHLHAVFLNCLTNSNNPDVK--IAALNA-VINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE-ATAQEALEL 254 (1012)
Q Consensus 179 ~~~~~~l~~~l~~~l~~~~~~~vr--~~a~~~-l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~-~~~~~~~~~ 254 (1012)
.+.+..+++.+.+.|.++.+.++. ..|+.. +...+...+.....+.+.++++.+++.+.+.++.+.+ .....+++-
T Consensus 79 ~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~ 158 (174)
T PF04510_consen 79 IPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRD 158 (174)
T ss_pred HHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 788999999999999887433443 334432 2334444444545678889999999999998887666 677777777
Q ss_pred HHHHHccc
Q 001791 255 LIELAGTE 262 (1012)
Q Consensus 255 L~~l~~~~ 262 (1012)
+-.++...
T Consensus 159 ~e~~v~~~ 166 (174)
T PF04510_consen 159 FESFVSRQ 166 (174)
T ss_pred HHHHHHHH
Confidence 77666533
No 125
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.73 E-value=0.056 Score=68.87 Aligned_cols=311 Identities=14% Similarity=0.148 Sum_probs=183.9
Q ss_pred CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh--hcc--ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001791 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TLT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1012)
Q Consensus 140 ~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~--~~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1012)
.|.-+-+++.....+.+..++.-|+..|+.++..+-+ ++. .+...++..|...+.+..+.++|...++|+..++..
T Consensus 1134 iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s 1213 (1780)
T PLN03076 1134 IWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLS 1213 (1780)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 3333555555544455666777788888787765422 111 123456666666565555789999999999999986
Q ss_pred hcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHH----HhHHHHHHHHHHhhccCCcchHHH
Q 001791 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLR----RQLVDVVGSMLQIAEAESLEEGTR 291 (1012)
Q Consensus 216 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~----~~~~~i~~~l~~~~~~~~~~~~vr 291 (1012)
. ...+..=|+.++..+.....+..+.....+++.+..++..+-..+. ..+.+++..+.....+. .+.++.
T Consensus 1214 ~-----~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~-~~~nIS 1287 (1780)
T PLN03076 1214 R-----VNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSR-FNKDIS 1287 (1780)
T ss_pred H-----HhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCc-Cccccc
Confidence 4 3344555777888887777777888999999999988765443222 45567777776666443 345666
Q ss_pred HHHHHHHHHHHHhhhccchh---------------------------hhcchhhHHHHHHHHHHhhccCCCCccccCCCC
Q 001791 292 HLAIEFVITLAEARERAPGM---------------------------MRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1012)
Q Consensus 292 ~~a~~~l~~l~~~~~~~~~~---------------------------~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1012)
..|++++..++..-...+.. ......+..-.+|.+...-.-.. +
T Consensus 1288 L~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~-D-------- 1358 (1780)
T PLN03076 1288 LNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSF-D-------- 1358 (1780)
T ss_pred HHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhc-C--------
Confidence 67777766553320000000 00000111223333332211111 1
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCC---cc----hH-HHHHHHHHhhC-----------------C------CChhH
Q 001791 345 EDEDAGESSNYSVGQECLDRLAIALGGN---TI----VP-VASEQLPAYLA-----------------A------PEWQK 393 (1012)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~~~---~~----~~-~~~~~l~~~l~-----------------~------~~~~~ 393 (1012)
+...++..|.+.|-.+....|.. .+ +. .++|.+...-. + ..|.
T Consensus 1359 -----~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl- 1432 (1780)
T PLN03076 1359 -----PRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWL- 1432 (1780)
T ss_pred -----CcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHH-
Confidence 12235666776665555555521 11 11 34444432110 0 1243
Q ss_pred HHHHHHHHHHHHhhcH---HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcC
Q 001791 394 HHAALIALAQIAEGCA---KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD 470 (1012)
Q Consensus 394 r~aal~~l~~l~~~~~---~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~ 470 (1012)
.+++..+|..+++-.. +.+...++.++..+..++..++..+-..+..|+.++....+..+.++....++..+.+.+.
T Consensus 1433 ~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~ 1512 (1780)
T PLN03076 1433 YETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAAN 1512 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 5666777777666544 3455677888888888888999999999999999998888777766666666666666554
Q ss_pred C
Q 001791 471 D 471 (1012)
Q Consensus 471 ~ 471 (1012)
.
T Consensus 1513 ~ 1513 (1780)
T PLN03076 1513 A 1513 (1780)
T ss_pred H
Confidence 4
No 126
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=0.19 Score=59.20 Aligned_cols=471 Identities=14% Similarity=0.135 Sum_probs=240.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHH---hhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHH
Q 001791 25 ETLISHLMSTSNEQRSEAELLFNL---CKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQ 101 (1012)
Q Consensus 25 ~~ll~~~~s~d~~~r~~A~~~L~~---~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~ 101 (1012)
.-+.+.+.+.++.....|-..|.. |.-.-.+..+..++.+..+ ++.++|.+-....|+++.+.+. .-....+
T Consensus 544 ~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~gae~~irkMl~LVWs-kd~~i~e~v~~ayk~l~~~~~~----n~~~~e~ 618 (1251)
T KOG0414|consen 544 PIISQLLFSKTTTEVKEAIDFLVRCKQFGIDGAEFGIRKMLPLVWS-KDKEIREAVENAYKQLYFRPDG----NSKASEA 618 (1251)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhhhC-CCccHHHHHHHHHHHHhccCCC----CchhhHH
Confidence 334555677788888888888764 3221223456777777654 4556888888888888766421 1112233
Q ss_pred HHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhh----cCCCHHHHHHHHHHHHHhhhhHhhh
Q 001791 102 SSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV----SSDSVKLQESAFLIFAQLSQYIGDT 177 (1012)
Q Consensus 102 ~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~----~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1012)
..+...|+..+.. .+..-+.++-.++..++... ..-+.++..|...+ .....+.+.+++.+++-++...++-
T Consensus 619 ~~ia~NL~~l~~~-~s~~d~~slE~vl~~lv~~~---~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~I 694 (1251)
T KOG0414|consen 619 SSIAQNLSKLLID-ASIGDLTSLEEVLCELVARG---YIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSI 694 (1251)
T ss_pred HHHHHHHHHHHhc-ccccchhhHHHHHHHHHhCC---CccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhh
Confidence 6667777777764 55555666777777776532 12234455554444 2223345567777777776654443
Q ss_pred ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC--cchHhHH-----HhhHHHHHHHHHHHHhcCC---hHH
Q 001791 178 LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS--SADRDRF-----QDLLPLMMRTLTESLNNGN---EAT 247 (1012)
Q Consensus 178 ~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~--~~~~~~~-----~~~~~~ll~~l~~~l~~~~---~~~ 247 (1012)
.......++++ ++. .+.....++..+..++..-.. ......| .-++..+-..+....-..+ ..+
T Consensus 695 v~~~~~~lv~i---glg---~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~ 768 (1251)
T KOG0414|consen 695 VLANLDLLVQI---GLG---EPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGV 768 (1251)
T ss_pred hhhhhHHHHHh---ccC---cHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHH
Confidence 32233333222 222 234444444444333322100 0001001 1111122222221111112 224
Q ss_pred HHHHHHHHHHHHccchHHHHHh-----HHHHHHHHH-Hhhc-cCCcc-----hHHHHHHHHHHHHHHHhhhccchhhhcc
Q 001791 248 AQEALELLIELAGTEPRFLRRQ-----LVDVVGSML-QIAE-AESLE-----EGTRHLAIEFVITLAEARERAPGMMRKL 315 (1012)
Q Consensus 248 ~~~~~~~L~~l~~~~~~~~~~~-----~~~i~~~l~-~~~~-~~~~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 315 (1012)
...++..+..++. .|+.+... ....+.... +..+ .++.. ...|...-.++..+... + + +.
T Consensus 769 ~e~ais~Iy~is~-~Pe~la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~v---A---i-kq 840 (1251)
T KOG0414|consen 769 AEVAISAIYSISM-LPEVLATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDSLIFIVGDV---A---I-KQ 840 (1251)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHhHHHHHHHH---H---H-HH
Confidence 4556666665554 33333221 111222111 1100 01100 01121111122222221 0 0 11
Q ss_pred hhhHHHHHHHHHHhh-ccC-------CCCccc-cC---C-CCCCccc-cCCcchhhHHHHHHHHHH---HcCCCcchHHH
Q 001791 316 PQFINRLFAILMSML-LDI-------EDDPLW-HS---A-ETEDEDA-GESSNYSVGQECLDRLAI---ALGGNTIVPVA 378 (1012)
Q Consensus 316 ~~~~~~l~~~l~~~l-~~~-------~~~~~~-~~---~-~~~~ed~-~~~~~~~~a~~~l~~l~~---~~~~~~~~~~~ 378 (1012)
.-|++..++.-+.+- ... .+..+- .. . ..+.+.+ -....-..-.+.+..+++ .+|++.++..+
T Consensus 841 lvyiE~~i~~~~kRr~~~~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~gek~lLg~f 920 (1251)
T KOG0414|consen 841 LVYIEVCISKEFKRRKIKTELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGEKSLLGRF 920 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcChHHHHHHH
Confidence 235555555222211 000 000000 00 0 0000000 000000111223333332 34556777788
Q ss_pred HHHHHHhhC----CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhH
Q 001791 379 SEQLPAYLA----APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDL 453 (1012)
Q Consensus 379 ~~~l~~~l~----~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1012)
.|++.+..+ .+++..+.||..+|+.+.--..+.+..+++ .++..+. .++|.||..+..++|.++-.++.
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~----llftimeksp~p~IRsN~VvalgDlav~fpn-- 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLP----LLFTIMEKSPSPRIRSNLVVALGDLAVRFPN-- 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHHHhcCCCceeeecchheccchhhhccc--
Confidence 888887774 367999999999999987666655555554 4445554 89999999999999999877753
Q ss_pred HhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001791 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1012)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 533 (1012)
.++..-+.++..|.| +++.||..|...+..++-+--- .+..+ +..+..++.+++..++.-|-.-+..+...
T Consensus 995 ---lie~~T~~Ly~rL~D-~~~~vRkta~lvlshLILndmi-KVKGq----l~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 ---LIEPWTEHLYRRLRD-ESPSVRKTALLVLSHLILNDMI-KVKGQ----LSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ---ccchhhHHHHHHhcC-ccHHHHHHHHHHHHHHHHhhhh-Hhccc----HHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 456778889999999 9999999999999998764321 12334 34556677888888887666666666544
No 127
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.73 E-value=0.12 Score=56.85 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=108.4
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHH-HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHHHH
Q 001791 388 APEWQKHHAALIALAQIAEGCAKVMV-KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLPAL 465 (1012)
Q Consensus 388 ~~~~~~r~aal~~l~~l~~~~~~~~~-~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~il~~l 465 (1012)
..+-..+.||+.++..++......-. ..-..+...+++.+.|+...|..++.-+|.++.-.+++.- +.++ ...+..+
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~k-skfl~~ngId~l 466 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLK-SKFLRNNGIDIL 466 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHH-HHHHHcCcHHHH
Confidence 35677888999999888765442111 1223567778888899999999999999999988876543 3333 4678888
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHhhcCCccc-ccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001791 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEI-LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1012)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~-l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 534 (1012)
.+.+.+ .++.+|..+.++|..+.-++.... ..++-.--...+..+.++++..|++.++..+-++....
T Consensus 467 ~s~~~~-~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 467 ESMLTD-PDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 898888 889999999999999987765332 22333334566777888999999999999998886543
No 128
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.72 E-value=0.001 Score=62.19 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=114.4
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC
Q 001791 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1012)
..+..++..+.+.++++++.-|..++..++..++..+.+....+....+..+++.++....+.+...++.++..++....
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45677788888999999999999999999999998866665677888999999999874566788999999999987543
Q ss_pred ------cccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHH
Q 001791 494 ------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAIL 553 (1012)
Q Consensus 494 ------~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l 553 (1012)
.+...|.++.+++.+++++++ ......++.++..+....+..|.||..++-..+...+
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 245578999999999998886 5677899999999999988889999888877766554
No 129
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.3 Score=60.58 Aligned_cols=232 Identities=20% Similarity=0.228 Sum_probs=137.2
Q ss_pred cchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHH
Q 001791 286 LEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRL 365 (1012)
Q Consensus 286 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l 365 (1012)
.++..|-.+.++|..++... .-++|+..+...++..+....+.- -......+..++..-
T Consensus 888 ~~p~~rc~~~ea~arLaq~v--------~~~~f~a~~aq~~fdklas~~d~i-------------~R~ghslalg~lhky 946 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVV--------GSAPFVASLAQNSFDKLASARDPI-------------TRTGHSLALGCLHKY 946 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhc--------cccchHHHHHHHHHHHHHhcCCcH-------------HHHHHHHHHHHHHHh
Confidence 35666777777888777641 224577777777777765432210 000112233333332
Q ss_pred HHHcCCCcchHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-CCC--ChhHHHHHHHH
Q 001791 366 AIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-RDP--HPRVRWAAINA 441 (1012)
Q Consensus 366 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-~d~--~~~vr~~a~~~ 441 (1012)
.-.+++...+..-+..+.....|+ .+.++..++.++..+.+.....+..+....+..+...+ .++ +..|+..--++
T Consensus 947 vgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~ 1026 (2067)
T KOG1822|consen 947 VGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRC 1026 (2067)
T ss_pred ccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccc
Confidence 222333444555455555666665 45999999999999998877666666666665555554 333 44555555555
Q ss_pred HH------HhhhhhchhHHhh--------hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHH
Q 001791 442 IG------QLSTDLGPDLQNQ--------FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSK 507 (1012)
Q Consensus 442 l~------~l~~~~~~~~~~~--------~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~ 507 (1012)
+. .+....++++..+ +....+-.. ..+.+++++.++.+++.++.++---.+. .-.++.++..
T Consensus 1027 ~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~-allls~~d~lnqa~ai~clqqlhlFapr---~~n~~~lV~~ 1102 (2067)
T KOG1822|consen 1027 FNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAAC-ALLLSHSDPLNQAAAIKCLQQLHLFAPR---HVNLDSLVLQ 1102 (2067)
T ss_pred cccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHH-HHhcCCCccchHHHHHHHHHHHHhhcch---hccHHHHHHH
Confidence 54 6666665544211 111122222 2223326888999999999988544432 2456788888
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH
Q 001791 508 LLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY 542 (1012)
Q Consensus 508 l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 542 (1012)
+...+..+..-.|...+.|+..++..-......|.
T Consensus 1103 L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a 1137 (2067)
T KOG1822|consen 1103 LCSLLSSSYLILRRASFSCLRQLVQREASEVCEYA 1137 (2067)
T ss_pred HHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHH
Confidence 88888887777888888888888766544434443
No 130
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.70 E-value=0.0006 Score=62.86 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=84.0
Q ss_pred hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHH---HHH
Q 001791 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV---ADS 533 (1012)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l---~~~ 533 (1012)
.++.++|..++.+.+ ....-+--|...+..+++..+.+.+.|.+++++..+...+++.++.+...++.++..+ ...
T Consensus 35 dy~~~Lpif~dGL~E-t~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRE-TEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhc-cCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 456889999999988 5555678889999999998444667899999999999999999999999999999999 777
Q ss_pred hHhhhHhhHhhhhHHHHHHHh
Q 001791 534 SQEHFQKYYDAVMPFLKAILV 554 (1012)
Q Consensus 534 ~~~~~~~~~~~il~~l~~~l~ 554 (1012)
+|+.+.||+.+++|.+.-...
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 889999999999998875543
No 131
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.19 Score=58.06 Aligned_cols=115 Identities=16% Similarity=0.186 Sum_probs=73.0
Q ss_pred HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccc----cCcHHHHHHHHHHHh
Q 001791 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL----TPYLDGIVSKLLVLL 512 (1012)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l----~~~~~~il~~l~~~l 512 (1012)
.++..+|.++...+..+....+.-+.|.+.+. .+ +++.+...|..|+..++..++.... +.-.+-++..+...+
T Consensus 567 i~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~-a~-~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYlv~sla~~L 644 (1014)
T KOG4524|consen 567 IVLDSIGTIAAVMGEEFQPELMDYLYPVLEKL-AS-PSEAISQVAQSCALRIADALNYGSPPHLIRENVDYLVNSLALRL 644 (1014)
T ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHh-cC-chHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHHHHHHHHHh
Confidence 34566888888888877544455555555544 44 5888999999999999998764333 233444555555555
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001791 513 QNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1012)
Q Consensus 513 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~ 555 (1012)
+... +-.++-..+..++...+....|++.+++..++..+.+
T Consensus 645 ~~~~--~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~ 685 (1014)
T KOG4524|consen 645 NTSG--MSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLLDY 685 (1014)
T ss_pred ccCC--CCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHHHH
Confidence 4322 1123345555566666556678888888877777654
No 132
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=97.68 E-value=0.23 Score=58.86 Aligned_cols=178 Identities=18% Similarity=0.262 Sum_probs=113.8
Q ss_pred CCcc--hHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccc-cHHHHHHHHH---------HhhcCCCChHHHHHHH
Q 001791 139 NGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFL---------NCLTNSNNPDVKIAAL 206 (1012)
Q Consensus 139 ~~~~--~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~---------~~l~~~~~~~vr~~a~ 206 (1012)
++|+ .++..|.+.+-+++|..|+++..++..+.+..+..+.. .+..++-.++ .+..+..-..||.+..
T Consensus 71 ~~w~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ca 150 (1549)
T KOG0392|consen 71 RQWPFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACA 150 (1549)
T ss_pred ccccHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 4775 46777888888899999999999999998875543321 2233322222 1222222357999999
Q ss_pred HHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCc
Q 001791 207 NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESL 286 (1012)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 286 (1012)
++|+.++..+ ....+.. .++.+.+.+..++++.|+..+..+......+.+.+...+..+++..+.-++ +.
T Consensus 151 q~L~~~l~~~----~~s~~~~----~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~--ds 220 (1549)
T KOG0392|consen 151 QALGAYLKHM----DESLIKE----TLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLE--DS 220 (1549)
T ss_pred HHHHHHHHhh----hhHhhHH----HHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hc
Confidence 9999999876 3333333 445555555556899999888888876665555555555566666665553 45
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhcc
Q 001791 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLD 332 (1012)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 332 (1012)
+++++..|..++..++... + +.....+..++..+...+..
T Consensus 221 ~ddv~~~aa~~l~~~~s~~---v---~l~~~~i~~lv~~l~~~l~~ 260 (1549)
T KOG0392|consen 221 DDDVRSVAAQFLVPAPSIQ---V---KLMVQKIAKLVHTLWSFLLE 260 (1549)
T ss_pred chHHHHHHHHHhhhhhHHH---H---hhhHhHHHHHHHHHHHHHHH
Confidence 7788888888888877741 1 12223455566665555443
No 133
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.68 E-value=0.017 Score=58.43 Aligned_cols=247 Identities=13% Similarity=0.187 Sum_probs=158.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhHhhh-cc-ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHH
Q 001791 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDT-LT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRF 225 (1012)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~-~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 225 (1012)
|-..++++++..|..|+.+|+.+.+..+.+ +. ..+.-++..+...+.|. ..-..+++.+..++..- . .....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~---~~~~~~l~gl~~L~~~~-~-~~~~~- 77 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH---ACVQPALKGLLALVKMK-N-FSPES- 77 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH---hhHHHHHHHHHHHHhCc-C-CChhh-
Confidence 445678889999999999999999998754 32 25666777888777553 33445588888888532 1 11222
Q ss_pred HhhHHHHHHHHHHHH--hcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 226 QDLLPLMMRTLTESL--NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 226 ~~~~~~ll~~l~~~l--~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
...+++.+++.. +.-....|..+++++..+.+.+...+...-..++..+++.++. +-|+.--..+++++..+..
T Consensus 78 ---~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~g-EkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 78 ---AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDG-EKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ---HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 334555554422 2234568999999999999998887776667777777776643 3466656667778887776
Q ss_pred hhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhh-HHHHHHHHHHHcC-CCcchHHHHHH
Q 001791 304 ARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV-GQECLDRLAIALG-GNTIVPVASEQ 381 (1012)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~-a~~~l~~l~~~~~-~~~~~~~~~~~ 381 (1012)
. .+ +.++.+.++..+.-+.--. +..... .++.+ ..++-..|-..+. ...+.+..+|.
T Consensus 154 ~---~~-----~~~~~e~lFd~~~cYFPI~-----F~pp~~--------dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~ 212 (262)
T PF14500_consen 154 E---FD-----ISEFAEDLFDVFSCYFPIT-----FRPPPN--------DPYGITREDLKRALRNCLSSTPLFAPFAFPL 212 (262)
T ss_pred h---cc-----cchhHHHHHHHhhheeeee-----eeCCCC--------CCCCCCHHHHHHHHHHHhcCcHhhHHHHHHH
Confidence 3 21 3567777777776554321 000000 01111 1222222322222 24566789999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHh
Q 001791 382 LPAYLAAPEWQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLN 425 (1012)
Q Consensus 382 l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~ 425 (1012)
+.+-+.++...++..++..+...+...+ ..+.+|+..+...+..
T Consensus 213 LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 213 LLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988877665 3567777777766543
No 134
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.13 Score=57.11 Aligned_cols=157 Identities=21% Similarity=0.214 Sum_probs=115.0
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001791 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1012)
Q Consensus 377 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1012)
..=+++.+++.+.++-.|+++.+.++..-.+.+. ...+..++.. .+|.|..||++|..+||-++-.-
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d------ 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD------ 586 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecC------
Confidence 3456778889999999999999888765444432 2344444444 78999999999999999876432
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
+..+|..++.|.++-|+.||..++-+|+-.|...+.. .-+..|-.+..++...||..|+-+++.+.--..
T Consensus 587 ---p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 587 ---PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred ---hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc
Confidence 2345566666665578999999999999998877632 223444445567788899999999998887777
Q ss_pred hhhHhhHhhhhHHHHHHHhh
Q 001791 536 EHFQKYYDAVMPFLKAILVN 555 (1012)
Q Consensus 536 ~~~~~~~~~il~~l~~~l~~ 555 (1012)
+...|-+..+-..+.+.+.+
T Consensus 657 ~~~~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 657 EQLCPKVNGFRKQLEKVIND 676 (929)
T ss_pred cccCchHHHHHHHHHHHhhh
Confidence 77777777777777777754
No 135
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.67 E-value=0.029 Score=64.63 Aligned_cols=356 Identities=17% Similarity=0.145 Sum_probs=178.6
Q ss_pred chHhHHHHHHHHHHHHHhcccCCC--CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhh
Q 001791 116 SAKSISKKLCDTVSELASNILPEN--GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL 193 (1012)
Q Consensus 116 ~~~~vr~~~~~~l~~i~~~~~~~~--~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 193 (1012)
++..+| .+...+..++....... .-..+++.|...+++++......++.+|..+.-.....-.-....+++.+.+.+
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 455555 44566776665321100 124578888888888888888888888887764322211112345667777777
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCcchHhHH--HhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch-HHHHHhH
Q 001791 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP-RFLRRQL 270 (1012)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~~ 270 (1012)
..+ +..++..++++|.++...-. ....+ .+.+|.++.. +. ++..+..++.+|..+..... .....+.
T Consensus 341 ~s~-~~~l~~~aLrlL~NLSfd~~---~R~~mV~~GlIPkLv~L----L~--d~~~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 341 PSE-NEDLVNVALRLLFNLSFDPE---LRSQMVSLGLIPKLVEL----LK--DPNFREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred cCC-CHHHHHHHHHHHHHhCcCHH---HHHHHHHCCCcHHHHHH----hC--CCchHHHHHHHHHHhccCHhhHHHHhhc
Confidence 776 78899999999998875321 11111 1345555544 43 34466667777777664321 1111111
Q ss_pred HHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhh--cchhhHHH-------HHHHHHHhhccCC-CC----
Q 001791 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMR--KLPQFINR-------LFAILMSMLLDIE-DD---- 336 (1012)
Q Consensus 271 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~~~~~~~-------l~~~l~~~l~~~~-~~---- 336 (1012)
+.++.+.+.+... .++.+...++.++..++..+++...+.+ .++.++.. ++-.+++.++..+ ..
T Consensus 411 -dcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f 488 (708)
T PF05804_consen 411 -DCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELF 488 (708)
T ss_pred -chHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHH
Confidence 2334443333211 2233333344444444433211111110 01111111 1111111111111 00
Q ss_pred ccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCC----cch--HHHHHHHHHhhCC--CChhHHHHHHHHHHHHHhhc
Q 001791 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN----TIV--PVASEQLPAYLAA--PEWQKHHAALIALAQIAEGC 408 (1012)
Q Consensus 337 ~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~----~~~--~~~~~~l~~~l~~--~~~~~r~aal~~l~~l~~~~ 408 (1012)
.+|-.+-..--. .........++++.++..--++ .++ ..++|++...+.. .+......++..+|.++...
T Consensus 489 ~~~i~~L~~~v~--~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~ 566 (708)
T PF05804_consen 489 VDFIGDLAKIVS--SGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP 566 (708)
T ss_pred HHHHHHHHHHhh--cCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH
Confidence 000000000000 0001235677888887643222 122 1467778877764 23456667778888877532
Q ss_pred HHHHHHhH--HHHHHHHHhhCCCC--ChhHHHHHHHHHHHhhhhhc--hhHHhhhhhhhHHHHHhhcCCCCChHHHHHHH
Q 001791 409 AKVMVKNL--EQVLSMVLNSFRDP--HPRVRWAAINAIGQLSTDLG--PDLQNQFHPQVLPALAGAMDDFQNPRVQAHAA 482 (1012)
Q Consensus 409 ~~~~~~~l--~~i~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~ 482 (1012)
.....+ ..+++.+...|+.. +....-..++++.++..+-. ..+ -.-.++...++..++| .|+.+|..|-
T Consensus 567 --~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~l--l~~~~~~~ylidL~~d-~N~~ir~~~d 641 (708)
T PF05804_consen 567 --ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVL--LKETEIPAYLIDLMHD-KNAEIRKVCD 641 (708)
T ss_pred --HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHH--HhccchHHHHHHHhcC-CCHHHHHHHH
Confidence 222222 24566666665432 34444555666666665421 111 1224688889999999 9999998888
Q ss_pred HHHHHHhhc
Q 001791 483 SAVLNFSEN 491 (1012)
Q Consensus 483 ~al~~l~~~ 491 (1012)
.+|.-+.+.
T Consensus 642 ~~Ldii~e~ 650 (708)
T PF05804_consen 642 NALDIIAEY 650 (708)
T ss_pred HHHHHHHHh
Confidence 888777654
No 136
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.65 E-value=0.039 Score=59.48 Aligned_cols=353 Identities=11% Similarity=0.084 Sum_probs=180.3
Q ss_pred CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHH--HHHHHHHHHHHHHhhcchHhHHHHHHHHHHH
Q 001791 53 DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH--TQSSLKSMLLQSIQLESAKSISKKLCDTVSE 130 (1012)
Q Consensus 53 ~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~--~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~ 130 (1012)
+.+.++..++.++.+...+.+.+....++..++...+ ..+..+-+. .....-..++..|.. .+..+...++.+++.
T Consensus 50 ~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~-~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~ 127 (429)
T cd00256 50 LSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD-TRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAK 127 (429)
T ss_pred cHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhch-HHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHH
Confidence 4356778888888877788999999998888887641 111111000 001122345666665 688899999999999
Q ss_pred HHhcccCCCCcch----HHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhHh--hhccccHHHHHHHHHHhhcCC-CChHHH
Q 001791 131 LASNILPENGWPE----LLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIG--DTLTPHLKHLHAVFLNCLTNS-NNPDVK 202 (1012)
Q Consensus 131 i~~~~~~~~~~~~----ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~-~~~~vr 202 (1012)
++..... ..-.. +++.+...++++ +...+..++.++..+...-. ..+.. ...++.+.+.|+.. .+.+..
T Consensus 128 l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 128 LACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred HHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccCHHHHHHHHhhccccHHHH
Confidence 9875322 22222 344555555543 35666777888887765421 11110 11234444444432 145666
Q ss_pred HHHHHHHHHHHHhhcCcchHhHH--HhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch------HHHHHhHH-HH
Q 001791 203 IAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP------RFLRRQLV-DV 273 (1012)
Q Consensus 203 ~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~------~~~~~~~~-~i 273 (1012)
..++-|+--+.-.- . ..... .+.+|.+++.+... ..+.+..-++.+|..++.... ......+. .+
T Consensus 205 Y~~ll~lWlLSF~~--~-~~~~~~~~~~i~~l~~i~k~s---~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l 278 (429)
T cd00256 205 YQSIFCIWLLTFNP--H-AAEVLKRLSLIQDLSDILKES---TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV 278 (429)
T ss_pred HHHHHHHHHHhccH--H-HHHhhccccHHHHHHHHHHhh---hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh
Confidence 66666665443221 1 11111 24555555555442 355677777778887776431 11111111 12
Q ss_pred HHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCc
Q 001791 274 VGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESS 353 (1012)
Q Consensus 274 ~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~ 353 (1012)
...+-.+...+-.|+++.. .++.+....+.. ......+..|...+..-. -+|......
T Consensus 279 ~~~l~~L~~rk~~DedL~e-dl~~L~e~L~~~---~k~ltsfD~Y~~El~sg~----------L~WSp~H~s-------- 336 (429)
T cd00256 279 LKTLQSLEQRKYDDEDLTD-DLKFLTEELKNS---VQDLSSFDEYKSELRSGR----------LHWSPVHKS-------- 336 (429)
T ss_pred HHHHHHHhcCCCCcHHHHH-HHHHHHHHHHHH---HHHcCCHHHHHHHHhcCC----------ccCCCCCCC--------
Confidence 2211111222333455443 344444444320 000011122222222111 134332211
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhhCCCC
Q 001791 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYL-AAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSFRDP 430 (1012)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~d~ 430 (1012)
......-+..+..+. + .++..+.+.+ .+.++..-..|+.-+|.++...+. .+...+. .=..+++.++++
T Consensus 337 -----e~FW~EN~~kf~~~~-~-~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~ 408 (429)
T cd00256 337 -----EKFWRENADRLNEKN-Y-ELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHE 408 (429)
T ss_pred -----chHHHHHHHHHHhcc-h-HHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCC
Confidence 111111111111111 1 2344444555 356777778899999999988653 2222111 235678889999
Q ss_pred ChhHHHHHHHHHHHhh
Q 001791 431 HPRVRWAAINAIGQLS 446 (1012)
Q Consensus 431 ~~~vr~~a~~~l~~l~ 446 (1012)
++.||..|+.|++.+.
T Consensus 409 d~~Vr~eAL~avQklm 424 (429)
T cd00256 409 DPNVRYEALLAVQKLM 424 (429)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 137
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.63 E-value=0.0034 Score=62.87 Aligned_cols=190 Identities=18% Similarity=0.226 Sum_probs=121.8
Q ss_pred HHHHHhhC-CCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH-Hhh
Q 001791 380 EQLPAYLA-APEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQ 456 (1012)
Q Consensus 380 ~~l~~~l~-~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~ 456 (1012)
+.+...++ +.++..++.++.+++..+..... .+.. --..++.+...+.++++.+|..|++++..++....... ...
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir-~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~ 93 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIR-DLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM 93 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHH-HcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 34444555 46899999999999997654332 1111 12367889999999999999999999999886553321 133
Q ss_pred hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001791 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
|+++++..+...- -+..++.++..+|.++.-.-. ....+...++.++.++...+..+|..++.++.+++..-.
T Consensus 94 ~i~~Vc~~~~s~~---lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~- 166 (254)
T PF04826_consen 94 YIPQVCEETVSSP---LNSEVQLAGLRLLTNLTVTND---YHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPD- 166 (254)
T ss_pred HHHHHHHHHhcCC---CCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHH-
Confidence 5555555444321 357899999999999853221 233445567777888888899999999999999875422
Q ss_pred hhHhhH-hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhC
Q 001791 537 HFQKYY-DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1012)
Q Consensus 537 ~~~~~~-~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1012)
.....+ .+.++.+..++... +...+.-+++..+..+...++
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~---~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSS---ESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHHHHHhccchhHHHHHHccC---CccHHHHHHHHHHHHHHHhhC
Confidence 111122 35566666666542 223343445555555554444
No 138
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0056 Score=68.68 Aligned_cols=234 Identities=15% Similarity=0.184 Sum_probs=164.1
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhh
Q 001791 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1012)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 541 (1012)
+...+..+.| +.+.+|..+...+..+++...+.. .-....++...+..+++.++.+--.++..+.+++...+
T Consensus 729 ~qeai~sl~d-~qvpik~~gL~~l~~l~e~r~~~~-~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------ 800 (982)
T KOG4653|consen 729 LQEAISSLHD-DQVPIKGYGLQMLRHLIEKRKKAT-LIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------ 800 (982)
T ss_pred HHHHHHHhcC-CcccchHHHHHHHHHHHHhcchhh-hhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc------
Confidence 5555666777 778899999999999999665432 35667888999999999998888888888888887644
Q ss_pred HhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHH
Q 001791 542 YDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLC 621 (1012)
Q Consensus 542 ~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~ 621 (1012)
+.++|.+.+...+..+.....-|-++=+++..++.+.| +.+..|...+++.++...+ +.+...|...+..++.++
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~G-el~~~y~~~Li~tfl~gvr---epd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALG-ELVFKYKAVLINTFLSGVR---EPDHEFRASSLANLGQLC 875 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhcC---CchHHHHHhHHHHHHHHH
Confidence 55777777755443332211223333488999999999 7788888888888887333 235567888888999999
Q ss_pred HHhcCCcccchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHH
Q 001791 622 KCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADE 701 (1012)
Q Consensus 622 ~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~ 701 (1012)
....-....++.++...++.....|.. .-.|.+|..++..+...
T Consensus 876 q~~a~~vsd~~~ev~~~Il~l~~~d~s------------------------------------~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 876 QLLAFQVSDFFHEVLQLILSLETTDGS------------------------------------VLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHccCCc------------------------------------hhhHHHHHHHHHHHHhc
Confidence 887766666777777777766543211 22367899999999999
Q ss_pred hhhcccccH----HHHHHHhccccCccCCHHHHHHHHHhHHHHHHHH
Q 001791 702 LKEGFFPWI----DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 744 (1012)
Q Consensus 702 ~~~~~~p~~----~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 744 (1012)
++..+.|+. -+....+..+.....++++|.-|..++-.+-..+
T Consensus 920 tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l 966 (982)
T KOG4653|consen 920 TGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAAL 966 (982)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence 998888854 3444445555544445667776666665554443
No 139
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.62 E-value=0.013 Score=61.09 Aligned_cols=201 Identities=17% Similarity=0.140 Sum_probs=134.9
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhh-hhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC-ccccc
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLST-DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT-PEILT 498 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~-~~~l~ 498 (1012)
...+..+.+.+...|.+++..+..+.. ...+++.......++..+.+.++. ....-+.-|+.++.-++-.++ .....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkk-g~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKK-GKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 334445677889999999998877653 334445467788899999999987 555666778888888766643 12234
Q ss_pred CcHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHhHhhhHhhHh--hhhHHHHH--HHhhccc------cccchhhH
Q 001791 499 PYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKA--ILVNATD------KSNRMLRA 566 (1012)
Q Consensus 499 ~~~~~il~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~--~il~~l~~--~l~~~~~------~~~~~lr~ 566 (1012)
..+..+.+.|.+.+.+.. ..+|..++.|++.+....+.....+.. ..+..+.. +.+.... .+...+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 667788888888887664 467788889999988776654333321 33332222 1111111 12346889
Q ss_pred HHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhc
Q 001791 567 KSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLG 625 (1012)
Q Consensus 567 ~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 625 (1012)
.|+.+|+.+...++...+..++...++.+..+.+. .+..+|-++-.+++-+.....
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s---~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDS---DDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998766777778888888876552 344577777777766655544
No 140
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.56 E-value=0.0035 Score=72.72 Aligned_cols=164 Identities=17% Similarity=0.217 Sum_probs=137.1
Q ss_pred chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001791 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1012)
Q Consensus 374 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1012)
....+...+.-...|.|..+-.-++..+..++......+.++...++|.++..+.+..+.+|.++..++..++..
T Consensus 292 ~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns----- 366 (815)
T KOG1820|consen 292 YTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS----- 366 (815)
T ss_pred cchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc-----
Confidence 334445555556678899999999999999999999888899999999999999999999999999999988873
Q ss_pred HhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc-ccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001791 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1012)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~-~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~ 532 (1012)
..+..+.+.++..+.+ .+|.++..+..++...+...++ .....-...+++.+....++.+..||..++.+++.+..
T Consensus 367 --~~l~~~~~~I~e~lk~-knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 367 --TPLSKMSEAILEALKG-KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred --ccHHHHHHHHHHHhcC-CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 3466788899999999 9999999999999999988773 23345577899999999999999999999999999999
Q ss_pred HhHhh-hHhhHhhh
Q 001791 533 SSQEH-FQKYYDAV 545 (1012)
Q Consensus 533 ~~~~~-~~~~~~~i 545 (1012)
..|+. +..|+..+
T Consensus 444 ~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 444 VHGEEVFKKLLKDL 457 (815)
T ss_pred HhhHHHHHHHHHhh
Confidence 99864 44444433
No 141
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=97.53 E-value=0.19 Score=56.36 Aligned_cols=298 Identities=13% Similarity=0.162 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC-CHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCC
Q 001791 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN 197 (1012)
Q Consensus 119 ~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 197 (1012)
..|..++.-++..+.. ++-...+++......++..+ ..+.|+.++..+..+++.-..........++..+...-.+ .
T Consensus 5 ~~R~~a~~~l~~~i~~-~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~-~ 82 (464)
T PF11864_consen 5 SERIKAAEELCESIQK-YPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND-D 82 (464)
T ss_pred HHHHHHHHHHHHHHHh-CCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc-h
Confidence 3455555556555543 33234444444444555444 4578999999999998875442222233333333221111 1
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHH-------h-------------cCChHHHHHHHHHHHH
Q 001791 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESL-------N-------------NGNEATAQEALELLIE 257 (1012)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l-------~-------------~~~~~~~~~~~~~L~~ 257 (1012)
+-..|..|+.+|..=...+.. . .....+++..++..+.+.. . +.+.......+..+..
T Consensus 83 d~~~~l~aL~~LT~~Grdi~~-~-~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 83 DFDLRLEALIALTDNGRDIDF-F-EYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hHHHHHHHHHHHHcCCcCchh-c-ccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 345666666666532222210 0 1111122222222222100 0 0122334556677777
Q ss_pred HHccchHHHH-HhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCC
Q 001791 258 LAGTEPRFLR-RQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDD 336 (1012)
Q Consensus 258 l~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~ 336 (1012)
++......+. ..+..++..++.++......+++ ..++.++..++... ..| ...+..++..+.......
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di-~~~L~vldaii~y~-~iP------~~sl~~~i~vLCsi~~~~--- 229 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDI-EACLSVLDAIITYG-DIP------SESLSPCIEVLCSIVNSV--- 229 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHcC-cCC------hHHHHHHHHHHhhHhccc---
Confidence 7765544443 45666777666665544444444 66788888888741 012 123344444443332211
Q ss_pred ccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC------CCChhHHHHHHHHHHHHHhhcHH
Q 001791 337 PLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGCAK 410 (1012)
Q Consensus 337 ~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~------~~~~~~r~aal~~l~~l~~~~~~ 410 (1012)
+....+-+++..|.. .......+..+...+. ..+..+-.+|+..++.+.-+.++
T Consensus 230 ----------------~l~~~~w~~m~nL~~----S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~ 289 (464)
T PF11864_consen 230 ----------------SLCKPSWRTMRNLLK----SHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE 289 (464)
T ss_pred ----------------ccchhHHHHHHHHHc----CccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc
Confidence 112233345555552 2233344445555552 24566777999999998877632
Q ss_pred H----HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhh-hhhch
Q 001791 411 V----MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLS-TDLGP 451 (1012)
Q Consensus 411 ~----~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~-~~~~~ 451 (1012)
. +.-....+++.+...++..++.|-...+.++.++. ..++.
T Consensus 290 ~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 290 QGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred CCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhh
Confidence 1 11112348899999999888888877777777776 44443
No 142
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=97.53 E-value=0.0027 Score=59.46 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=110.1
Q ss_pred CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhH-hhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001791 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1012)
Q Consensus 140 ~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1012)
.+..+...+.++++++++..|-.|+..++.+++.. .+.+..+....+..++..++++.+..++..++.++..++....+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 45566777888888988999999999999999987 45555677888888888888876778899999999999987643
Q ss_pred c--chHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHh
Q 001791 219 S--ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (1012)
Q Consensus 219 ~--~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~ 280 (1012)
. ..++...+.+|.+++.+.+.+++ ......++.+|..++..+|..+.|+...+-..+...
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 1 23455567788888888887764 567788999999999999999999887776665543
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.51 E-value=0.061 Score=56.20 Aligned_cols=212 Identities=17% Similarity=0.109 Sum_probs=131.8
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCH
Q 001791 726 HEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDE 805 (1012)
Q Consensus 726 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 805 (1012)
....|.++...+..++..- ..++++......++..+.+.++..... -....+.++.-+.-..|.+-
T Consensus 56 ~~~~Re~aL~~l~~~l~~~-----------~~~d~v~~~~~tL~~~~~k~lkkg~~~-E~~lA~~~l~Ll~ltlg~g~-- 121 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSR-----------YLPDFVEDRRETLLDALLKSLKKGKSE-EQALAARALALLALTLGAGE-- 121 (309)
T ss_pred CHHHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHHHhccCCHH-HHHHHHHHHHHHhhhcCCCc--
Confidence 4678998888877776542 235666666777888888888766543 23334455554444455431
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccch------hhH
Q 001791 806 GQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFL------PFF 879 (1012)
Q Consensus 806 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~------~~~ 879 (1012)
....+++.+.++|.....+. ......|..++.|++.++-..+.... ..+
T Consensus 122 -~~~ei~~~~~~~L~~~l~d~------------------------s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~l 176 (309)
T PF05004_consen 122 -DSEEIFEELKPVLKRILTDS------------------------SASPKARAACLEALAICTFVGGSDEEETEELMESL 176 (309)
T ss_pred -cHHHHHHHHHHHHHHHHhCC------------------------ccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Confidence 12334444444444433210 01123556777888888877665432 223
Q ss_pred HHHHHhHhhhh-------cCCCCHHHHHHHHHHHHHHHHHhhhh-hHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHH
Q 001791 880 DELSSYLTPMW-------GKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1012)
Q Consensus 880 ~~ll~~l~~~l-------~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~ 951 (1012)
..++-...... ....++.+...|+..++.|+..++.. +..++...+|.+...|...+.+||-.|-.+++.+.
T Consensus 177 e~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 177 ESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 32222111111 11123568889999999999887763 55677889999999999999999999999999998
Q ss_pred hhcCC---ch-HHHHHHHHHHHHHhhcCC
Q 001791 952 EFGGS---VV-KPLVGEALSRLNVVIRHP 976 (1012)
Q Consensus 952 ~~~~~---~~-~~~~~~il~~L~~~l~~~ 976 (1012)
+.... .+ .+....+++.+..+-.+.
T Consensus 257 E~~~~~~~~~~~~~~~~l~~~l~~La~dS 285 (309)
T PF05004_consen 257 ELARDHEEDFLYEDMEELLEQLRELATDS 285 (309)
T ss_pred HHhhcccccccccCHHHHHHHHHHHHHhc
Confidence 88764 22 344566677776666544
No 144
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.12 Score=51.34 Aligned_cols=335 Identities=17% Similarity=0.169 Sum_probs=181.3
Q ss_pred HHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH-HHHHHHHHHHHh
Q 001791 163 AFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL-PLMMRTLTESLN 241 (1012)
Q Consensus 163 al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~l~ 241 (1012)
+..++..+.+.... ....+++++-+..+|..+ +..|+.-+++.++.+++..... ....+...+ ..+++.+..++.
T Consensus 63 cVscLERLfkakeg--ahlapnlmpdLQrGLiad-dasVKiLackqigcilEdcDtn-aVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEG--AHLAPNLMPDLQRGLIAD-DASVKILACKQIGCILEDCDTN-AVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred HHHHHHHHHhhccc--hhhchhhhHHHHhcccCC-cchhhhhhHhhhhHHHhcCchh-hHHHHHHHhhhhHHHHHHHHHc
Confidence 55566666554321 124677888888888887 8899999999999998875321 222222211 256777778888
Q ss_pred cCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHH-------HHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhc
Q 001791 242 NGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM-------LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRK 314 (1012)
Q Consensus 242 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l-------~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 314 (1012)
.++.++...+.+.+..++. .+..+ ..+++.- ..+.. + -++-+|...++++..+.+. .|.
T Consensus 139 geddeVAkAAiesikrial-fpaal----eaiFeSellDdlhlrnlaa-k-cndiaRvRVleLIieifSi---Spe---- 204 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIAL-FPAAL----EAIFESELLDDLHLRNLAA-K-CNDIARVRVLELIIEIFSI---SPE---- 204 (524)
T ss_pred CCcHHHHHHHHHHHHHHHh-cHHHH----HHhcccccCChHHHhHHHh-h-hhhHHHHHHHHHHHHHHhc---CHH----
Confidence 8899999999999998864 22222 2222200 00000 0 1233455566666666553 221
Q ss_pred chhhH--HHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchH--HHHHHHHHhhC--C
Q 001791 315 LPQFI--NRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVP--VASEQLPAYLA--A 388 (1012)
Q Consensus 315 ~~~~~--~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~~l~~~l~--~ 388 (1012)
..++. ..++..+..-|.-.+| .-......+....++..-.+..+++ .+++.+.+.+. |
T Consensus 205 saneckkSGLldlLeaElkGteD----------------tLVianciElvteLaeteHgreflaQeglIdlicnIIsGad 268 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTED----------------TLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGAD 268 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcc----------------eeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCC
Confidence 11111 2344444443332211 1122223444455554333344443 45666666665 4
Q ss_pred CChhHHHHHHHHHHHHHhhc------HHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-hHHhhhhhhh
Q 001791 389 PEWQKHHAALIALAQIAEGC------AKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFHPQV 461 (1012)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~------~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~i 461 (1012)
.++..+.-++..++.+.... .+.+-..+...+...+......+|....+|..++|.+...... +...+.-+.-
T Consensus 269 sdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppa 348 (524)
T KOG4413|consen 269 SDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPA 348 (524)
T ss_pred CCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChH
Confidence 66777777777777765432 2333344555566667777788899999999999999876532 2212222323
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC--cccccC--c--------HH--------HHHHHHHHHhhcCChhHHH
Q 001791 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCT--PEILTP--Y--------LD--------GIVSKLLVLLQNGKQMVQE 521 (1012)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~--~~~l~~--~--------~~--------~il~~l~~~l~~~~~~v~~ 521 (1012)
...++...-|.+...-+..++.+|..+..... ++.+.. . ++ +-+..+...++.+.++++.
T Consensus 349 aehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihc 428 (524)
T KOG4413|consen 349 AEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHC 428 (524)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHH
Confidence 33343333331222235667777777654321 111100 0 00 1123344455666777887
Q ss_pred HHHHHHHHHH
Q 001791 522 GALTALASVA 531 (1012)
Q Consensus 522 ~a~~~l~~l~ 531 (1012)
.++..+..++
T Consensus 429 AalktfTAia 438 (524)
T KOG4413|consen 429 AALKTFTAIA 438 (524)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 145
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.017 Score=65.01 Aligned_cols=219 Identities=17% Similarity=0.222 Sum_probs=143.3
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHH
Q 001791 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1012)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (1012)
...+|.+++..+.-+++.++..+ .-....++...+..+.+. +.-.+-.+...+..|+
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~------~~~~ekvl~i~ld~Lkde-----------------dsyvyLnaI~gv~~Lc 796 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKAT------LIQGEKVLAIALDTLKDE-----------------DSYVYLNAIRGVVSLC 796 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhh------hhhHHHHHHHHHHHhccc-----------------CceeeHHHHHHHHHHH
Confidence 34567777777777776421111 113355666666655431 1223445677777888
Q ss_pred HHcCCCcchHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001791 367 IALGGNTIVPVASEQLPAYLAAP--EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ 444 (1012)
Q Consensus 367 ~~~~~~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 444 (1012)
..++ +.+++.+.....+.-+.. +...|-+ .+++.++...++.+..+...++..++.+.+|++...|..++..+|.
T Consensus 797 evy~-e~il~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 797 EVYP-EDILPDLSEEYLSEKKKLQTDYRLKVG--EAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred Hhcc-hhhHHHHHHHHHhcccCCCccceehHH--HHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 8776 677776665443332222 3334444 7888888888888889999999999999999999999999999999
Q ss_pred hhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH----HHHHHHHHHhhcC-ChhH
Q 001791 445 LSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD----GIVSKLLVLLQNG-KQMV 519 (1012)
Q Consensus 445 l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~----~il~~l~~~l~~~-~~~v 519 (1012)
++....-.. ..++.+++..++........+.+|.+|...+..+..+.+.+ +.|++. +....+.+..... +..+
T Consensus 874 Lcq~~a~~v-sd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d-lLpilr~~l~Dl~~tl~~~vr~~~dd~~ 951 (982)
T KOG4653|consen 874 LCQLLAFQV-SDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED-LLPILRLLLIDLDETLLSYVRQHDDDGL 951 (982)
T ss_pred HHHHHhhhh-hHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 998776444 45777888777776654368889999999999999988844 445442 3333344433332 3345
Q ss_pred HHHHHHHHHHHHHH
Q 001791 520 QEGALTALASVADS 533 (1012)
Q Consensus 520 ~~~a~~~l~~l~~~ 533 (1012)
|-.+..|+..+-..
T Consensus 952 klhaql~leei~a~ 965 (982)
T KOG4653|consen 952 KLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444433
No 146
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.48 E-value=0.00056 Score=56.77 Aligned_cols=86 Identities=34% Similarity=0.550 Sum_probs=67.5
Q ss_pred HHHHHhhC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCccccc
Q 001791 420 LSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT 498 (1012)
Q Consensus 420 ~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~ 498 (1012)
++.+++.+ +|+++.+|..++++++.+.. +..+|.+...++| +++.||..|+.+|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKD-EDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC---------
Confidence 46777777 89999999999999995431 2568888888888 99999999999999872
Q ss_pred CcHHHHHHHHHHHhhcC-ChhHHHHHHHHHH
Q 001791 499 PYLDGIVSKLLVLLQNG-KQMVQEGALTALA 528 (1012)
Q Consensus 499 ~~~~~il~~l~~~l~~~-~~~v~~~a~~~l~ 528 (1012)
-+..++.|.+.+.+. +..+|..+..+||
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 245677777777765 4567888888875
No 147
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=97.48 E-value=0.34 Score=55.58 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhcc
Q 001791 854 EEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 933 (1012)
Q Consensus 854 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~ 933 (1012)
..++....-.++.++..++.-.. .++|.+...++.+....+|...+-++++++......+..| +|-+..+|.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaK----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~Y----iP~I~~~L~ 1016 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAK----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRY----IPMIAASLC 1016 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHh----hHHHHHHhc
Confidence 34555566667777777664322 3667777777666677788888889999988866655544 555667999
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhH-ccCCCC
Q 001791 934 DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQF-HRDSID 1006 (1012)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~~-~p~~~~ 1006 (1012)
|+++-||+.++-.|..|++..--.+..- -++..+...++ .++..|.-|=-|+|.++.. .|...|
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~~vKw~G~--Lf~Rf~l~l~D-------~~edIr~~a~f~~~~vL~~~~P~~f~ 1081 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGIVKWNGE--LFIRFMLALLD-------ANEDIRNDAKFYISEVLQSEEPNFFP 1081 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhhhhhcchh--hHHHHHHHHcc-------cCHHHHHHHHHHHHHHHhhcCccchH
Confidence 9999999999999999887643222211 12223333332 2345666677778876655 344334
No 148
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.3 Score=54.91 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=76.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccc---cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC
Q 001791 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP---HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS 218 (1012)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~ 218 (1012)
++.+..+++.+..-+-.+|..++..+..+...-+..+.. ..|.=+..++..|.|. ...||..++-.|..++...+.
T Consensus 121 qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 121 QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCch
Confidence 567777778777778899999999999998876654322 3445556667777887 789999999999988876432
Q ss_pred cchHhHHHhhHHHHHHHHHHHHhcC---C-hHHHHHHHHHHHHHHccc
Q 001791 219 SADRDRFQDLLPLMMRTLTESLNNG---N-EATAQEALELLIELAGTE 262 (1012)
Q Consensus 219 ~~~~~~~~~~~~~ll~~l~~~l~~~---~-~~~~~~~~~~L~~l~~~~ 262 (1012)
.-..-.|. .+...++..+..+ + .-+...|+.++..+....
T Consensus 200 IQKlVAFE----NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 200 IQKLVAFE----NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHH----HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
Confidence 11122233 3444455544321 1 135667777777777544
No 149
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.44 E-value=0.02 Score=65.80 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=102.5
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHhH-HHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001791 390 EWQKHHAALIALAQIAEGCAKVMVKNL-EQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1012)
Q Consensus 390 ~~~~r~aal~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1012)
+.+.|..|.+.|+.++.+........+ .+++...+..++|+ .|..|.-++.|||++=+.+...--...-...-..++.
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 368899999999999998764333333 45778888889884 8999999999999987665321102233445667788
Q ss_pred hcCCCCChHHHHHHHHHHHHHhhcCCcc----------ccc-----CcHHHHHH----HHHHHhhcCChhHHHHHHHHHH
Q 001791 468 AMDDFQNPRVQAHAASAVLNFSENCTPE----------ILT-----PYLDGIVS----KLLVLLQNGKQMVQEGALTALA 528 (1012)
Q Consensus 468 ~l~~~~~~~v~~~a~~al~~l~~~~~~~----------~l~-----~~~~~il~----~l~~~l~~~~~~v~~~a~~~l~ 528 (1012)
.|.| +.++||.+|..||+.|+.+...+ .+. .-.+.++. .++..+++..+-+|.+...+++
T Consensus 650 ~LsD-~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls 728 (1387)
T KOG1517|consen 650 LLSD-PVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALS 728 (1387)
T ss_pred HhcC-ccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHH
Confidence 8888 99999999999999999874210 000 11233333 4566677778888888777777
Q ss_pred HHHHHhHhh
Q 001791 529 SVADSSQEH 537 (1012)
Q Consensus 529 ~l~~~~~~~ 537 (1012)
.++.....+
T Consensus 729 ~~~~g~~~~ 737 (1387)
T KOG1517|consen 729 HFVVGYVSH 737 (1387)
T ss_pred HHHHhhHHH
Confidence 776554433
No 150
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=97.42 E-value=0.052 Score=55.00 Aligned_cols=246 Identities=16% Similarity=0.211 Sum_probs=137.4
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHH
Q 001791 189 FLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1012)
Q Consensus 189 l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 268 (1012)
+-..|.++ ++.+|..|+.+|..++..++... .-..-+..+++.+...+. |......++..+..++... .+-..
T Consensus 4 Lg~~Ltse-d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~-~~~~~ 76 (262)
T PF14500_consen 4 LGEYLTSE-DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMK-NFSPE 76 (262)
T ss_pred hhhhhCCC-CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCc-CCChh
Confidence 44567787 99999999999999999875211 111224456666666663 5556666688888777432 22223
Q ss_pred hHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCcc
Q 001791 269 QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDED 348 (1012)
Q Consensus 269 ~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed 348 (1012)
....++..+++....+......|..+++++..+.+. ... .+...-..++..+++.+. .+.||
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~---~~~---~l~~~~~~fv~~~i~~~~-gEkDP----------- 138 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN---HRE---ALQSMGDDFVYGFIQLID-GEKDP----------- 138 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH---hHH---HHHhchhHHHHHHHHHhc-cCCCH-----------
Confidence 344555555544433344566799999999988874 111 111122233333333222 11221
Q ss_pred ccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhh--------CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHH
Q 001791 349 AGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL--------AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVL 420 (1012)
Q Consensus 349 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l--------~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~ 420 (1012)
...-.+.+++..+...+......+.+...+.-+. +++..-.|+.--.+|.......+ .+-+..+
T Consensus 139 ----RnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~----~fa~~~~ 210 (262)
T PF14500_consen 139 ----RNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP----LFAPFAF 210 (262)
T ss_pred ----HHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH----hhHHHHH
Confidence 1122344555555555543333333333332221 11111122222222222211111 2346678
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHh
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAG 467 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~ 467 (1012)
|.++.-|.++.+.++..++.++...+..++.....+|...++..+-.
T Consensus 211 p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 211 PLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888776557777777776643
No 151
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.39 E-value=0.9 Score=58.49 Aligned_cols=198 Identities=15% Similarity=0.183 Sum_probs=127.5
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCC-HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC--CCCcchH
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPEL 144 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~-~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~l 144 (1012)
+.+..++.+|.-.|+++..+.-. +..++ ...+..+.+-+...+.+..+..+|..+.+++..+...... ..+|..+
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle--~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI 1225 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM 1225 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcc--hhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH
Confidence 44677889999988886654300 11211 1233444455556666667788999999999988653322 2599999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhcc----ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCc-
Q 001791 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS- 219 (1012)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~- 219 (1012)
+..+...+.+.++.....|+.++..++...-..+. ..+..++..+.++.+...+.++-..|+..|..+...+.+.
T Consensus 1226 F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~ 1305 (1780)
T PLN03076 1226 FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGD 1305 (1780)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcc
Confidence 99999888888888888899999888765332221 2566667766666554434566677777777664443100
Q ss_pred ------------------------c------hHhH-HHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHH
Q 001791 220 ------------------------A------DRDR-FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR 268 (1012)
Q Consensus 220 ------------------------~------~~~~-~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 268 (1012)
. ..+. ..-|+| ++..+.....++.+++|..|++.|-++...++..|.+
T Consensus 1306 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~ 1384 (1780)
T PLN03076 1306 LGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSL 1384 (1780)
T ss_pred ccccccccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCH
Confidence 0 0011 122333 4444555566789999999999999988777655543
No 152
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.37 E-value=0.0033 Score=58.15 Aligned_cols=95 Identities=18% Similarity=0.122 Sum_probs=79.1
Q ss_pred HHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHH-hhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHH---HhhcCC
Q 001791 881 ELSSYLTPMWGKDKTAEERRIAICIFDDVAEQ-CREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVC---AEFGGS 956 (1012)
Q Consensus 881 ~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l---~~~~~~ 956 (1012)
.++|.+.+.+... ..-.+..|...+.++++. .+..+.|.+|++++.+..+|+.++++|...++.+|..+ ....|+
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 4677777777433 334678889999999999 77779999999999999999999999999999999999 445567
Q ss_pred chHHHHHHHHHHHHHhhcCC
Q 001791 957 VVKPLVGEALSRLNVVIRHP 976 (1012)
Q Consensus 957 ~~~~~~~~il~~L~~~l~~~ 976 (1012)
...||+.++|+.+.-....+
T Consensus 117 aLvPyyrqLLp~ln~f~~k~ 136 (183)
T PF10274_consen 117 ALVPYYRQLLPVLNLFKNKN 136 (183)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999666544
No 153
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=97.37 E-value=0.3 Score=52.43 Aligned_cols=131 Identities=23% Similarity=0.227 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh---CCCCChhHHHHHHHHHHHhhhhhch------------hHHh
Q 001791 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS---FRDPHPRVRWAAINAIGQLSTDLGP------------DLQN 455 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~------------~~~~ 455 (1012)
...|.||...+..+++...+...+.+...+..++.. -...+++-+.+|+..++.++..... .+..
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 467889999999988776654444444444444432 1345789999999999999865421 1111
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l 527 (1012)
=+...++|.+. .-.+ ..|-++..|++.+..+-..+++ ..+..+++.+.+.+.+++.-|+..|..|+
T Consensus 305 Ff~~~v~peL~-~~~~-~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVN-SHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS--S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCC-CCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 13345566666 2223 5788999999999999887763 46788999999999999888888777664
No 154
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.37 E-value=0.0021 Score=60.09 Aligned_cols=143 Identities=21% Similarity=0.246 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHhh-cHHHHHHhHHHHHHHH------------HhhCCCCChhHHHHHHHHHHHhhhhhchhHH----
Q 001791 392 QKHHAALIALAQIAEG-CAKVMVKNLEQVLSMV------------LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ---- 454 (1012)
Q Consensus 392 ~~r~aal~~l~~l~~~-~~~~~~~~l~~i~~~l------------~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~---- 454 (1012)
++|.+|+.+++.++.. .+..+..|+..++|.- .-.+.|+++++|.+|+.++..+.+..++.+.
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4788999999999888 4455666776666543 2346899999999999999998876543221
Q ss_pred ---------------hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCccccc-CcHHHHHHHHHHHhhcCChh
Q 001791 455 ---------------NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILT-PYLDGIVSKLLVLLQNGKQM 518 (1012)
Q Consensus 455 ---------------~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~-~~~~~il~~l~~~l~~~~~~ 518 (1012)
...+.++=..|+..++.+.+..+....+.++..++.+.+-..+. .+++.++..+...+.+.+..
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 01122233334445555456778888999999999887644443 45677888888888888999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001791 519 VQEGALTALASVADSS 534 (1012)
Q Consensus 519 v~~~a~~~l~~l~~~~ 534 (1012)
++..++.|++.+....
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999988654
No 155
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.34 E-value=0.00032 Score=44.01 Aligned_cols=30 Identities=50% Similarity=0.639 Sum_probs=27.1
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHHhh
Q 001791 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1012)
Q Consensus 924 l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1012)
++|.+++.++|+++.||.+|+++||.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999875
No 156
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.58 Score=54.27 Aligned_cols=84 Identities=13% Similarity=0.166 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHHHHHHH---HHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHH-HHHHHHH
Q 001791 892 KDKTAEERRIAICIFDD---VAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKP-LVGEALS 967 (1012)
Q Consensus 892 ~~~~~~~~~~~~~~l~~---l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~-~~~~il~ 967 (1012)
++.+-..|..++.++.. +++.....+.|.+.+.-|.++.++.+.++-+-+.|+.++-.+..++++-++. ....++|
T Consensus 813 S~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP 892 (1014)
T KOG4524|consen 813 SHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLP 892 (1014)
T ss_pred cchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 46666677788877764 4555666778888999999999999999999999999999999999986554 3556677
Q ss_pred HHHHhhcC
Q 001791 968 RLNVVIRH 975 (1012)
Q Consensus 968 ~L~~~l~~ 975 (1012)
.+...+++
T Consensus 893 ~l~~~~~~ 900 (1014)
T KOG4524|consen 893 WLKHLCQD 900 (1014)
T ss_pred HHHHHHHH
Confidence 77766654
No 157
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.30 E-value=0.27 Score=51.29 Aligned_cols=354 Identities=14% Similarity=0.100 Sum_probs=180.1
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCC--CcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHh
Q 001791 56 SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDS--FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELAS 133 (1012)
Q Consensus 56 ~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~--~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~ 133 (1012)
.+...++.+++....+..-+....++--.+..+.. ..+.......++..-..++..|.+ .++.+-+..+.+++.++.
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r-~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNR-QDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhc-CChHHHHHHHHHHHHHHH
Confidence 45677778877655566666777777777766421 111111122222223356777776 688888888888888876
Q ss_pred cccCC---CCcchHHHHHHHhhcC-CCHHHHHHHHHHHHHhhhhHhh--hc--cccHHHHHHHHHHhhcCCCChHHHHHH
Q 001791 134 NILPE---NGWPELLPFMFQCVSS-DSVKLQESAFLIFAQLSQYIGD--TL--TPHLKHLHAVFLNCLTNSNNPDVKIAA 205 (1012)
Q Consensus 134 ~~~~~---~~~~~ll~~l~~~~~~-~~~~~r~~al~~l~~l~~~~~~--~~--~~~~~~l~~~l~~~l~~~~~~~vr~~a 205 (1012)
...-. ....-....|...+++ .+...+..+.+||..+...-.- .+ ..-...+++.+. +...+-+++...
T Consensus 144 ~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~---s~~~~~QlQYqs 220 (442)
T KOG2759|consen 144 FGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILA---STKCGFQLQYQS 220 (442)
T ss_pred hccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHh---ccCcchhHHHHH
Confidence 43211 1333345666666665 4566677788888877654211 11 011234444443 222366777777
Q ss_pred HHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHH------HHHhHHHHHHHHHH
Q 001791 206 LNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF------LRRQLVDVVGSMLQ 279 (1012)
Q Consensus 206 ~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~------~~~~~~~i~~~l~~ 279 (1012)
+-|+-.+.-. +.....-...++++.+...+.... .+.+...++.++..++...+.. ..+.+..=+...++
T Consensus 221 ifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~---KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 221 IFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKEST---KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 7777655421 000000011234445555544432 4566677778888887766421 11111100111122
Q ss_pred hh-ccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhH
Q 001791 280 IA-EAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVG 358 (1012)
Q Consensus 280 ~~-~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a 358 (1012)
.+ +.+-.+++++. .++++..-.+.+ ......+..|...+..-.+ +|.... -.
T Consensus 297 ~L~~rkysDEDL~~-di~~L~e~L~~s---vq~LsSFDeY~sEl~sG~L----------~WSP~H-------------k~ 349 (442)
T KOG2759|consen 297 SLEERKYSDEDLVD-DIEFLTEKLKNS---VQDLSSFDEYKSELRSGRL----------EWSPVH-------------KS 349 (442)
T ss_pred HHHhcCCCcHHHHH-HHHHHHHHHHHH---HHhhccHHHHHHHHHhCCc----------CCCccc-------------cc
Confidence 22 22233445443 355554443320 0000011122222222111 233222 11
Q ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHhhCCCCChhHH
Q 001791 359 QECLDRLAIALGGNTIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLNSFRDPHPRVR 435 (1012)
Q Consensus 359 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~~l~d~~~~vr 435 (1012)
......-+..+. +.- -.++..+...++. .++..-..|+.-+|..++..++.-. .+.+ -=..+++.+++++|+||
T Consensus 350 e~FW~eNa~rln-enn-yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vr 426 (442)
T KOG2759|consen 350 EKFWRENADRLN-ENN-YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVR 426 (442)
T ss_pred cchHHHhHHHHh-hcc-HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHH
Confidence 112222122221 111 2345555556654 5688888999999999998775211 1111 22577889999999999
Q ss_pred HHHHHHHHHhhh
Q 001791 436 WAAINAIGQLST 447 (1012)
Q Consensus 436 ~~a~~~l~~l~~ 447 (1012)
..|+.++..+..
T Consensus 427 y~ALlavQ~lm~ 438 (442)
T KOG2759|consen 427 YHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 158
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.27 E-value=0.07 Score=59.17 Aligned_cols=142 Identities=10% Similarity=0.211 Sum_probs=90.6
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH
Q 001791 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD 502 (1012)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~ 502 (1012)
|+.+.+ .++.++..|...|.++...++. .-+..+..++....| .+..||..|+..|..+|..-+ .++.
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~-----l~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~~-----~~v~ 95 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPD-----LQEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDNP-----EHVS 95 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GG-----GHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T-------T-HH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChh-----hHHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhHH-----HHHh
Confidence 334443 3588999999999999988864 456788888898888 899999999999999887543 5789
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhh-hHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhCh
Q 001791 503 GIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH-FQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGK 581 (1012)
Q Consensus 503 ~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~-~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~ 581 (1012)
.+...|.++|+..+......+-.++.++....... +...++++.+. ...+..+|.+++..+..-...++.
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~---------~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS---------KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH------------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---------ccCchHHHHHHHHHHHHHHhhCcH
Confidence 99999999999888777777777777776654432 22333333211 113446899888877665556665
Q ss_pred hhhh
Q 001791 582 DKFR 585 (1012)
Q Consensus 582 ~~~~ 585 (1012)
+.+.
T Consensus 167 ~~~~ 170 (556)
T PF05918_consen 167 ELLT 170 (556)
T ss_dssp TTS-
T ss_pred HHhh
Confidence 6555
No 159
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.018 Score=58.79 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=104.2
Q ss_pred CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHH
Q 001791 387 AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPAL 465 (1012)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l 465 (1012)
.+.+...|+.|+.-|..+++.......=+--..+..++..+++++..+|..|+++||..+..-+..- ... -...++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ-EQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcccHHHH
Confidence 3467899999999999999876642211111233445558999999999999999999988765432 222 22477888
Q ss_pred HhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH-HHHHHHHHHhhc--CChhHHHHHHHHHHHHHHHhHhh
Q 001791 466 AGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN--GKQMVQEGALTALASVADSSQEH 537 (1012)
Q Consensus 466 ~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~-~il~~l~~~l~~--~~~~v~~~a~~~l~~l~~~~~~~ 537 (1012)
+..+....+..+|..|..|++.++++..+- ...++. .=...|..++++ .+...+..++..++.+......+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g-~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPG-QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHH-HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 888876456678899999999999987642 112211 115667777777 45778888999999988776543
No 160
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.22 E-value=0.00049 Score=43.19 Aligned_cols=30 Identities=33% Similarity=0.664 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001791 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1012)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1012)
++|.+++.++|+++.||.+|+++++.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 161
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.18 E-value=0.44 Score=53.09 Aligned_cols=171 Identities=15% Similarity=0.185 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHH
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPF 147 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~ 147 (1012)
..+...+++|+.++.++++. ++.+ .+.-.+.++....+ .+..||..+...|..+++.. + ...+.+...
T Consensus 33 kg~~k~K~Laaq~I~kffk~-----FP~l----~~~Ai~a~~DLcED-ed~~iR~~aik~lp~~ck~~-~-~~v~kvaDv 100 (556)
T PF05918_consen 33 KGSPKEKRLAAQFIPKFFKH-----FPDL----QEEAINAQLDLCED-EDVQIRKQAIKGLPQLCKDN-P-EHVSKVADV 100 (556)
T ss_dssp GS-HHHHHHHHHHHHHHHCC------GGG----HHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T----T-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh-----Chhh----HHHHHHHHHHHHhc-ccHHHHHHHHHhHHHHHHhH-H-HHHhHHHHH
Confidence 45789999999999999766 3433 33444566777765 78899999999999888742 2 355788899
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH--hHH
Q 001791 148 MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR--DRF 225 (1012)
Q Consensus 148 l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~ 225 (1012)
|.+++++.++......=.+|..+....+.. .+..++..+... ... +..+|..+++.+..-+..+...... ...
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~---tL~~lf~~i~~~-~~~-de~~Re~~lkFl~~kl~~l~~~~~~p~~E~ 175 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKG---TLTGLFSQIESS-KSG-DEQVRERALKFLREKLKPLKPELLTPQKEM 175 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHH----HS--HHHHHHHHHHHHHHGGGS-TTTS---HHH
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhc-ccC-chHHHHHHHHHHHHHHhhCcHHHhhchHHH
Confidence 999999888777666666666666654433 233333322211 133 6789999999887655544322111 222
Q ss_pred HhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001791 226 QDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1012)
Q Consensus 226 ~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l 258 (1012)
. ..++..+...+++-..+.....+.+|..+
T Consensus 176 e---~~i~~~ikkvL~DVTaeEF~l~m~lL~~l 205 (556)
T PF05918_consen 176 E---EFIVDEIKKVLQDVTAEEFELFMSLLKSL 205 (556)
T ss_dssp H---HHHHHHHHHHCTT--HHHHHHHHHHHHTS
T ss_pred H---HHHHHHHHHHHHhccHHHHHHHHHHHHhC
Confidence 2 24555566666553334444444444433
No 162
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.12 E-value=0.15 Score=54.99 Aligned_cols=261 Identities=23% Similarity=0.233 Sum_probs=149.7
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch
Q 001791 184 HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP 263 (1012)
Q Consensus 184 ~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~ 263 (1012)
...+.+.+.+.+. +..+|..+...++.+-.. ..++.+...+.+.++.+|..+...|..+-.
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~~~---------------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--- 103 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELGSE---------------EAVPLLRELLSDEDPRVRDAAADALGELGD--- 103 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhchH---------------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC---
Confidence 4556677777887 899999888775543321 344555666778889999999997776642
Q ss_pred HHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCC
Q 001791 264 RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAE 343 (1012)
Q Consensus 264 ~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~ 343 (1012)
+..++.+...+.. +.+..+|..+...+..+-.. ..+..++..+.+......+..
T Consensus 104 -------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~~----------------~a~~~l~~~l~~~~~~~a~~~-- 157 (335)
T COG1413 104 -------PEAVPPLVELLEN-DENEGVRAAAARALGKLGDE----------------RALDPLLEALQDEDSGSAAAA-- 157 (335)
T ss_pred -------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCch----------------hhhHHHHHHhccchhhhhhhh--
Confidence 1222233333332 56788898888777766541 112222232222110000000
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHH
Q 001791 344 TEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMV 423 (1012)
Q Consensus 344 ~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l 423 (1012)
.+......+..+...+..+ -.+...+.+.+.+.+.+..+|.++..+++.+.... ..+.+.+
T Consensus 158 ---~~~~~~~~r~~a~~~l~~~--------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l 218 (335)
T COG1413 158 ---LDAALLDVRAAAAEALGEL--------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLL 218 (335)
T ss_pred ---ccchHHHHHHHHHHHHHHc--------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHH
Confidence 0000111222222222222 12345566677888888899999999999887653 4566788
Q ss_pred HhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHH
Q 001791 424 LNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDG 503 (1012)
Q Consensus 424 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~ 503 (1012)
...++|+++.+|..++..++.+.. ....+.+...+.+ .++.++..+..++. .. ....
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~-----------~~~~~~l~~~l~~-~~~~~~~~~~~~~~----~~-------~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGD-----------EEAVDALAKALED-EDVILALLAAAALG----AL-------DLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCc-----------chhHHHHHHHHhc-cchHHHHHHHHHhc----cc-------Cchh
Confidence 888999999999999998887542 3445556666666 66666655555544 11 1111
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 504 IVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 504 il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
....+...+.+....++..+...++.+.
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 2233344445555556655555555444
No 163
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.10 E-value=0.0077 Score=56.41 Aligned_cols=141 Identities=20% Similarity=0.201 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHhcccCC---CCcchHHHHH------------HHhhcCCCHHHHHHHHHHHHHhhhhHhhh------
Q 001791 119 SISKKLCDTVSELASNILPE---NGWPELLPFM------------FQCVSSDSVKLQESAFLIFAQLSQYIGDT------ 177 (1012)
Q Consensus 119 ~vr~~~~~~l~~i~~~~~~~---~~~~~ll~~l------------~~~~~~~~~~~r~~al~~l~~l~~~~~~~------ 177 (1012)
++|..+..++..+++..-+. +.|+.++|.- .-.+.|+++.+|.+|+.++..+.+.....
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37888889999998873332 5888877765 12345778899999999999998764321
Q ss_pred -------ccc-------cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC
Q 001791 178 -------LTP-------HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1012)
Q Consensus 178 -------~~~-------~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~ 243 (1012)
|.+ .+-++...+...|..+.+..+....++|+..++...+. ...-.++++.++..+...+.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY---~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY---HRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh---hhcCHhHHHHHHHHHHHHHhcC
Confidence 111 34555666777777776788888999999999987531 1112367778888888888888
Q ss_pred ChHHHHHHHHHHHHHHccc
Q 001791 244 NEATAQEALELLIELAGTE 262 (1012)
Q Consensus 244 ~~~~~~~~~~~L~~l~~~~ 262 (1012)
|.+++..++.++..++...
T Consensus 158 d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCcHHHHHHHHHHHHHcCC
Confidence 9999999999999887644
No 164
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=97.09 E-value=0.0079 Score=51.23 Aligned_cols=97 Identities=18% Similarity=0.290 Sum_probs=79.2
Q ss_pred ccCcHHHHHHHHHHHhhc----CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHH
Q 001791 497 LTPYLDGIVSKLLVLLQN----GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1012)
Q Consensus 497 l~~~~~~il~~l~~~l~~----~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1012)
+.+++-.++..+...+.+ .+...|..++.+++.+.+..++.+..+.++++..|...+.. ..++..+++|+
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~------~~l~~~al~~W 78 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI------PELREEALSCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC------hhhHHHHHHHH
Confidence 445666677777776666 45678999999999999988888888888888888887643 25889999999
Q ss_pred HHHHhhhChhhhhhhHHHHHHHHHHHh
Q 001791 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1012)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1012)
..+.+.++.+.+.|.++.++-.+++.+
T Consensus 79 ~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 79 NCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999988887754
No 165
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.06 E-value=0.11 Score=56.13 Aligned_cols=254 Identities=19% Similarity=0.218 Sum_probs=139.2
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchH
Q 001791 143 ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR 222 (1012)
Q Consensus 143 ~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~ 222 (1012)
...+.+.+.+.+.++.+|..+...++.+. ....++.+.+.+.+. ++.+|..|..+++.+-..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~-~~~vr~~a~~aLg~~~~~------- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG----------SEEAVPLLRELLSDE-DPRVRDAAADALGELGDP------- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCC-CHHHHHHHHHHHHccCCh-------
Confidence 45666667777766777777766644332 235556666666776 777777777755543321
Q ss_pred hHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCC----------cchHHHH
Q 001791 223 DRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAES----------LEEGTRH 292 (1012)
Q Consensus 223 ~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~----------~~~~vr~ 292 (1012)
..+|.+++.+.. +.+..+|..+...|..+..... +..+++ .+.... ....+|.
T Consensus 105 ----~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a------~~~l~~----~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 105 ----EAVPPLVELLEN---DENEGVRAAAARALGKLGDERA------LDPLLE----ALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ----hHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh------hHHHHH----HhccchhhhhhhhccchHHHHHH
Confidence 112223333222 5667777777777776644221 111111 111111 1113444
Q ss_pred HHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCC
Q 001791 293 LAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGN 372 (1012)
Q Consensus 293 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~ 372 (1012)
.+...+..+.. +...+.+...+... ....+..+...+..+....
T Consensus 168 ~a~~~l~~~~~----------------~~~~~~l~~~l~~~-----------------~~~vr~~Aa~aL~~~~~~~--- 211 (335)
T COG1413 168 AAAEALGELGD----------------PEAIPLLIELLEDE-----------------DADVRRAAASALGQLGSEN--- 211 (335)
T ss_pred HHHHHHHHcCC----------------hhhhHHHHHHHhCc-----------------hHHHHHHHHHHHHHhhcch---
Confidence 44444443322 11222222222211 1124455555555544211
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh
Q 001791 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD 452 (1012)
Q Consensus 373 ~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~ 452 (1012)
..+.+.+...+.+++|.+|..++.++|.+.. ....+.+...+.+.++.++..+....+.+
T Consensus 212 ---~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~------- 271 (335)
T COG1413 212 ---VEAADLLVKALSDESLEVRKAALLALGEIGD----------EEAVDALAKALEDEDVILALLAAAALGAL------- 271 (335)
T ss_pred ---hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc----------chhHHHHHHHHhccchHHHHHHHHHhccc-------
Confidence 3456777788999999999999999997543 34556667778888888887776665511
Q ss_pred HHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC
Q 001791 453 LQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1012)
Q Consensus 453 ~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1012)
........+...+.+ ....++..+..++..+....
T Consensus 272 ----~~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 272 ----DLAEAALPLLLLLID-EANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ----CchhhHHHHHHHhhc-chhhHHHHHHHHHHhhcccc
Confidence 112233344445555 67778888888888775543
No 166
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.05 E-value=0.34 Score=50.50 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=97.5
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHH----HHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhhhhhc
Q 001791 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM----VKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLG 450 (1012)
Q Consensus 376 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~----~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1012)
|.++.++..++.|.|.....++..++|.+++....-+ ...++.++..+.+ --.|.+-+++.+++.++.++.--.+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 4478888899999999999999999999998755322 2334555555554 2346788889999999998875333
Q ss_pred hhHHhhhh-hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc--ccccCcHHHHHHHHHHHhhcCChh-HHHHHHHH
Q 001791 451 PDLQNQFH-PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EILTPYLDGIVSKLLVLLQNGKQM-VQEGALTA 526 (1012)
Q Consensus 451 ~~~~~~~~-~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~l~~~~~~il~~l~~~l~~~~~~-v~~~a~~~ 526 (1012)
..- .+. ..+.+.++..++. ..|+|...-...+..+.+..+. ..+. --+.++..|+.--++++.. +-......
T Consensus 394 nka--~~~~aGvteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~-kn~~l~ekLv~Wsks~D~aGv~gESnRl 469 (604)
T KOG4500|consen 394 NKA--HFAPAGVTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELA-KNPELFEKLVDWSKSPDFAGVAGESNRL 469 (604)
T ss_pred chh--hccccchHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHh-cCHHHHHHHHHhhhCCccchhhhhhhHH
Confidence 221 222 2466677777777 6778887777777777654331 0011 1144566666655555433 44444444
Q ss_pred HHHHHHH
Q 001791 527 LASVADS 533 (1012)
Q Consensus 527 l~~l~~~ 533 (1012)
+..++++
T Consensus 470 l~~lIkH 476 (604)
T KOG4500|consen 470 LLGLIKH 476 (604)
T ss_pred HHHHHHh
Confidence 4444443
No 167
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.05 E-value=0.025 Score=56.77 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=118.6
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcc--hHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhh--cccc
Q 001791 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWP--ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--LTPH 181 (1012)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~--~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~--~~~~ 181 (1012)
..|+..|....++.++..+..+++..+.+......+- .-++.+...+.++++.+|..|+.++..+....... +..+
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 4678888876789999999999999877544433343 34788889999999999999999999887664432 3334
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 001791 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1012)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~ 261 (1012)
++.++..+. ..+-+..++.+++++|.++..... ....+...+|. +...+..++...+..++++|..++..
T Consensus 95 i~~Vc~~~~---s~~lns~~Q~agLrlL~nLtv~~~---~~~~l~~~i~~----ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 95 IPQVCEETV---SSPLNSEVQLAGLRLLTNLTVTND---YHHMLANYIPD----LLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHHHHHHh---cCCCCCHHHHHHHHHHHccCCCcc---hhhhHHhhHHH----HHHHHHcCChHHHHHHHHHHHHhccC
Confidence 444444332 333367888999999998854321 23334444444 44556677888999999999988764
Q ss_pred chHHHHHhHH-HHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 262 EPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 262 ~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
. ......+. +....++.++. .+...++...++.++..+.+
T Consensus 165 p-~~~~~Ll~~q~~~~~~~Lf~-~~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 165 P-DMTRELLSAQVLSSFLSLFN-SSESKENLLRVLTFFENINE 205 (254)
T ss_pred H-HHHHHHHhccchhHHHHHHc-cCCccHHHHHHHHHHHHHHH
Confidence 3 32222221 23333333333 22344455555555555544
No 168
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.29 Score=54.66 Aligned_cols=58 Identities=21% Similarity=0.151 Sum_probs=42.8
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChh
Q 001791 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPR 433 (1012)
Q Consensus 376 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~ 433 (1012)
...+..+..+.+|+...+|++|+.+++.+.-.+.+...+....+...+.+.+.|.+..
T Consensus 623 ~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 623 KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence 3455666677778888999999999999887766655566667777777777666544
No 169
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.97 E-value=0.41 Score=52.05 Aligned_cols=241 Identities=16% Similarity=0.113 Sum_probs=146.5
Q ss_pred HHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHH
Q 001791 105 KSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKH 184 (1012)
Q Consensus 105 ~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ 184 (1012)
...++..|..+.+..++..++..+. .. .-+..+..++..+.+.++.+|.++...|+.+- .+.
T Consensus 56 ~~~L~~aL~~d~~~ev~~~aa~al~---~~-----~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~ 117 (410)
T TIGR02270 56 TELLVSALAEADEPGRVACAALALL---AQ-----EDALDLRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQ 117 (410)
T ss_pred HHHHHHHHhhCCChhHHHHHHHHHh---cc-----CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC----------chH
Confidence 4567777855466667665443332 11 11234788889999999999999999998553 245
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchH
Q 001791 185 LHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1012)
Q Consensus 185 l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~ 264 (1012)
..+.+...+.+. ++.+|..++.+++..-. . -.+.+...++++++.+|..++.+|..+.....
T Consensus 118 a~~~L~~~L~~~-~p~vR~aal~al~~r~~--------~--------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a- 179 (410)
T TIGR02270 118 AEPWLEPLLAAS-EPPGRAIGLAALGAHRH--------D--------PGPALEAALTHEDALVRAAALRALGELPRRLS- 179 (410)
T ss_pred HHHHHHHHhcCC-ChHHHHHHHHHHHhhcc--------C--------hHHHHHHHhcCCCHHHHHHHHHHHHhhccccc-
Confidence 556677777887 89999988877665211 1 11234445668899999999999998864321
Q ss_pred HHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCC
Q 001791 265 FLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAET 344 (1012)
Q Consensus 265 ~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 344 (1012)
.+.+. ... .+.++.+|..|+..+..+.. ......+.......
T Consensus 180 -----~~~L~----~al--~d~~~~VR~aA~~al~~lG~----------------~~A~~~l~~~~~~~----------- 221 (410)
T TIGR02270 180 -----ESTLR----LYL--RDSDPEVRFAALEAGLLAGS----------------RLAWGVCRRFQVLE----------- 221 (410)
T ss_pred -----hHHHH----HHH--cCCCHHHHHHHHHHHHHcCC----------------HhHHHHHHHHHhcc-----------
Confidence 11122 222 46689999999877755432 11112222211100
Q ss_pred CCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHH
Q 001791 345 EDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1012)
Q Consensus 345 ~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~ 424 (1012)
.. ... ......++. .|. +..++.+.+.++++. +|.+++.++|.+.. +..++.++
T Consensus 222 ------g~-~~~--~~l~~~lal-~~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~ 275 (410)
T TIGR02270 222 ------GG-PHR--QRLLVLLAV-AGG----PDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCL 275 (410)
T ss_pred ------Cc-cHH--HHHHHHHHh-CCc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHH
Confidence 00 011 111111111 132 256666777777655 89999999998654 33567777
Q ss_pred hhCCCCChhHHHHHHHHHHHhhh
Q 001791 425 NSFRDPHPRVRWAAINAIGQLST 447 (1012)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~ 447 (1012)
..+.|+. ++..|..+++.+.-
T Consensus 276 ~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 276 EAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred HHhcCcH--HHHHHHHHHHHhhC
Confidence 7887665 99999999888763
No 170
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.93 E-value=0.0096 Score=55.18 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=95.9
Q ss_pred chHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC-----CCCChhHHHHHHHHHHHhhh
Q 001791 374 IVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF-----RDPHPRVRWAAINAIGQLST 447 (1012)
Q Consensus 374 ~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l-----~d~~~~vr~~a~~~l~~l~~ 447 (1012)
..|.+++.+.+.++. .+|..|..++..+|.+..-.+...+ .+.... .+.+........ ...
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k--------~~~~~~~~~~~~~~~~~~~~~~l-----~~~ 73 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHK--------SIQKSLDSKSSENSNDESTDISL-----PMM 73 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHh--------cccccCCccccccccccchhhHH-----hhc
Confidence 356777777777765 5699999999999998654332211 111111 111122222222 111
Q ss_pred hhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001791 448 DLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1012)
Q Consensus 448 ~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l 527 (1012)
...+...+-|...++..+++.|+|..-..-...+..++..++...+... .||++.++|.++..+.+.+...++..+.-+
T Consensus 74 ~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL 152 (160)
T PF11865_consen 74 GISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQL 152 (160)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHH
Confidence 1111121235556778889999883344455678899999998877665 799999999999999988888999888888
Q ss_pred HHHHHHh
Q 001791 528 ASVADSS 534 (1012)
Q Consensus 528 ~~l~~~~ 534 (1012)
+.+...+
T Consensus 153 ~~lv~iv 159 (160)
T PF11865_consen 153 ADLVSIV 159 (160)
T ss_pred HHHHHHh
Confidence 8777543
No 171
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.85 E-value=0.015 Score=49.03 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=77.5
Q ss_pred ccCcHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHH
Q 001791 497 LTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECI 572 (1012)
Q Consensus 497 l~~~~~~il~~l~~~l~~~~----~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l 572 (1012)
+.+++-.++..+...+.+.. ...|..++.+++.+++..|+....+.++++-.|...+.. ..+|..+++|+
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~------~eL~~~al~~W 78 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI------PELRSLALRCW 78 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHH
Confidence 45566667777777766554 356899999999999998988888888888888888743 34899999999
Q ss_pred HHHHhhhChhhhhhhHHHHHHHHHHHh
Q 001791 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQ 599 (1012)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~i~~~l~~l~ 599 (1012)
..+.+.+..+...|.++.++-.+++.+
T Consensus 79 ~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 79 HVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 999999998888888888887777643
No 172
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.84 E-value=0.058 Score=56.65 Aligned_cols=150 Identities=20% Similarity=0.274 Sum_probs=101.3
Q ss_pred HHHHHH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc
Q 001791 416 LEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1012)
Q Consensus 416 l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1012)
+..++. .+.+++.++++.||..|+.|+|-++-.-. +...+.++.+...++. .+..++..|+.++..++...+.
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCc
Confidence 446664 45588999999999999999999885432 3344556666666655 5789999999999999887765
Q ss_pred ccccCc--------HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhH
Q 001791 495 EILTPY--------LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRA 566 (1012)
Q Consensus 495 ~~l~~~--------~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~ 566 (1012)
..+... ...+++.+.+.+.+.+..++..+.+++..+.....- .+ .+.++..|.-.+=++...+...+|.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i--~~-~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI--SD-PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC--Cc-HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 444333 347888899999988889999999999888754321 11 2345554444443333334444544
Q ss_pred HHHHHHHHHHhh
Q 001791 567 KSMECISLVGMA 578 (1012)
Q Consensus 567 ~a~~~l~~l~~~ 578 (1012)
|++.+...
T Consensus 175 ----~L~~Ffp~ 182 (298)
T PF12719_consen 175 ----CLSVFFPV 182 (298)
T ss_pred ----HHHHHHHH
Confidence 55555433
No 173
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.14 Score=56.51 Aligned_cols=220 Identities=12% Similarity=0.163 Sum_probs=129.2
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc----chHhHHHHHHHHHHHHHhcccCCCCcch
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPE 143 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~----~~~~vr~~~~~~l~~i~~~~~~~~~~~~ 143 (1012)
.++.....++.++++. |...+-+.+++|-+-+++.+... +...+-...-.+++.++..---.+...+
T Consensus 99 l~ks~~~~~geI~frA---------Wkea~~dL~eeiE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVee 169 (1005)
T KOG1949|consen 99 LQKSLMVYIGEIYFRA---------WKEASGDLLEEIENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEE 169 (1005)
T ss_pred ccHHHHHHHhHHHHHH---------HHHhccchHHHHhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4567777788888777 88777777777777777776531 2222333344455555432211123333
Q ss_pred H-----HHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc-cccHHHH----HHHHHHhhcCCCChHHHHHHHHHHHHHH
Q 001791 144 L-----LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL-TPHLKHL----HAVFLNCLTNSNNPDVKIAALNAVINFI 213 (1012)
Q Consensus 144 l-----l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~-~~~~~~l----~~~l~~~l~~~~~~~vr~~a~~~l~~~~ 213 (1012)
+ -|.|.+.++..+.++|..|..++-.+.--.+++. ....+.+ +..+...|.|+ -+.||..|+.-+..++
T Consensus 170 ml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 170 MLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDP-YPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHH
Confidence 3 3666777888899999999888776655444332 1122333 34666778887 8999999988887777
Q ss_pred HhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHH
Q 001791 214 QCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHL 293 (1012)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~ 293 (1012)
..+..-..+..+.+++..+.. ....+...++|...+++|..++..... .+.+..+++.+-..+ .|..+.+|.+
T Consensus 249 s~fWe~iP~~i~~~ll~kI~d---~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l--~D~se~VRvA 321 (1005)
T KOG1949|consen 249 SKFWEMIPPTILIDLLKKITD---ELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSL--HDNSEKVRVA 321 (1005)
T ss_pred HHHHHHcCHHHHHHHHHHHHH---HhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhh--hccchhHHHH
Confidence 654211112222222222222 222355668999999999988754321 122233333222222 3457889999
Q ss_pred HHHHHHHHHHh
Q 001791 294 AIEFVITLAEA 304 (1012)
Q Consensus 294 a~~~l~~l~~~ 304 (1012)
+.+++..+-.+
T Consensus 322 ~vd~ll~ik~v 332 (1005)
T KOG1949|consen 322 FVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHhh
Confidence 88888876543
No 174
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.79 E-value=0.29 Score=53.26 Aligned_cols=242 Identities=13% Similarity=-0.007 Sum_probs=139.9
Q ss_pred chHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcc
Q 001791 142 PELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (1012)
Q Consensus 142 ~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~ 220 (1012)
+..++.+...+. +++..++..+...+.... -+..+..+...|.+. ++.||..+.++|+.+-..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~----------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~~~----- 116 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQE----------DALDLRSVLAVLQAG-PEGLCAGIQAALGWLGGR----- 116 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhccC----------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCch-----
Confidence 345566666663 455666555444443111 112366777788887 888999999998743321
Q ss_pred hHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHH
Q 001791 221 DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1012)
Q Consensus 221 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~ 300 (1012)
.....+...+++.++.+|..++..+...... -.+.+...+ .+.+..+|..|+..+..
T Consensus 117 ----------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-----------~~~~L~~~L--~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 117 ----------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD-----------PGPALEAAL--THEDALVRAAALRALGE 173 (410)
T ss_pred ----------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC-----------hHHHHHHHh--cCCCHHHHHHHHHHHHh
Confidence 2334455566778888998888666652211 112233334 25678899999888877
Q ss_pred HHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHH
Q 001791 301 LAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASE 380 (1012)
Q Consensus 301 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~ 380 (1012)
+... ..... +...+.+. +...+..+...+..+. .. ....
T Consensus 174 l~~~------------~a~~~----L~~al~d~-----------------~~~VR~aA~~al~~lG----~~----~A~~ 212 (410)
T TIGR02270 174 LPRR------------LSEST----LRLYLRDS-----------------DPEVRFAALEAGLLAG----SR----LAWG 212 (410)
T ss_pred hccc------------cchHH----HHHHHcCC-----------------CHHHHHHHHHHHHHcC----CH----hHHH
Confidence 6541 11122 22221111 2235556665554432 22 2223
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001791 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1012)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1012)
.+........+..+......++.. .-+..++.+...++++. +|..+++++|.+.. +.
T Consensus 213 ~l~~~~~~~g~~~~~~l~~~lal~----------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-----------p~ 269 (410)
T TIGR02270 213 VCRRFQVLEGGPHRQRLLVLLAVA----------GGPDAQAWLRELLQAAA--TRREALRAVGLVGD-----------VE 269 (410)
T ss_pred HHHHHHhccCccHHHHHHHHHHhC----------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC-----------cc
Confidence 333333444444444433333332 11256777778888765 99999999998753 35
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHh
Q 001791 461 VLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1012)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1012)
.++.++..+.+ +.++..|-.++..|.
T Consensus 270 av~~L~~~l~d---~~~aR~A~eA~~~It 295 (410)
T TIGR02270 270 AAPWCLEAMRE---PPWARLAGEAFSLIT 295 (410)
T ss_pred hHHHHHHHhcC---cHHHHHHHHHHHHhh
Confidence 67888888877 448888888888875
No 175
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.77 E-value=0.059 Score=55.81 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=113.3
Q ss_pred ChhHHHHHH-HHHHHHHh-hcH-HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH---H--hhhhhhh
Q 001791 390 EWQKHHAAL-IALAQIAE-GCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL---Q--NQFHPQV 461 (1012)
Q Consensus 390 ~~~~r~aal-~~l~~l~~-~~~-~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~--~~~~~~i 461 (1012)
.|+...+.. ..+..++. ... ..+..+++-++|.++..+.|..+.+|..++.++..+....+... . ....+.+
T Consensus 88 ~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~ 167 (282)
T PF10521_consen 88 PWKSNPGLASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVF 167 (282)
T ss_pred CcccCCcccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHH
Confidence 566555322 44444444 332 46778999999999999999999999999999999998765433 1 2234445
Q ss_pred HHHHHhhcC--------CCCChHHHHHHHHHHHHHhhcCCcccccCc---HHHHH-HHHHHHhhc----CChhHHHHHHH
Q 001791 462 LPALAGAMD--------DFQNPRVQAHAASAVLNFSENCTPEILTPY---LDGIV-SKLLVLLQN----GKQMVQEGALT 525 (1012)
Q Consensus 462 l~~l~~~l~--------~~~~~~v~~~a~~al~~l~~~~~~~~l~~~---~~~il-~~l~~~l~~----~~~~v~~~a~~ 525 (1012)
.+.+..++. + ....+-..+..++..++.....+.-.++ +..++ +.+++.+.. +...++...++
T Consensus 168 ~~al~~~L~~LP~~tp~~-~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~ 246 (282)
T PF10521_consen 168 EDALFPCLYYLPPITPED-ESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQ 246 (282)
T ss_pred HHHHHHHhhcCCCCCCch-hhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHH
Confidence 555555554 3 4566778888888888764311111122 22222 324443322 23678889999
Q ss_pred HHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc
Q 001791 526 ALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1012)
Q Consensus 526 ~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~ 556 (1012)
.+..++..+|-....|+..+++.+.+.+.++
T Consensus 247 ~l~~~i~~lGi~~~~hL~rii~~l~~~l~np 277 (282)
T PF10521_consen 247 QLPPIIDELGISSVKHLQRIIPVLSQILENP 277 (282)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999988764
No 176
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.69 E-value=0.15 Score=53.59 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=81.0
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh--
Q 001791 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-- 457 (1012)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-- 457 (1012)
..+...+.+.+..+|..|+.++|-.+--..+.-..+ ++.+...+...+..||..|+.++..+....+.......
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~----l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEH----LPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 344578888999999999999999876555433333 44444555445899999999999999887775543222
Q ss_pred ------hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC
Q 001791 458 ------HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1012)
Q Consensus 458 ------~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1012)
...++..+.+.+.+ .++.++..|+.++..++-..
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~-~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDS-ENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred cCccchHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhcC
Confidence 24688888888888 78899999999999987644
No 177
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.64 E-value=1.1 Score=47.06 Aligned_cols=188 Identities=12% Similarity=0.156 Sum_probs=111.6
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCC----------CCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh--Hh
Q 001791 108 LLQSIQLESAKSISKKLCDTVSELASNILPE----------NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY--IG 175 (1012)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~----------~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~--~~ 175 (1012)
|+..|.. -+...|+.++.+.+.+.+..... .+||+++..|+....+++...- +-..++.+++. +.
T Consensus 81 Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~--~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 81 LIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALN--CGDMLRECIKHESLA 157 (335)
T ss_dssp HHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHH--HHHHHHHHTTSHHHH
T ss_pred HHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccch--HHHHHHHHHhhHHHH
Confidence 3333433 44555666666666655543221 3678999999998887764332 22233333332 11
Q ss_pred hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001791 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1012)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L 255 (1012)
..+.. ...+..+.+....+ +-+|-..|+..+..++...+ ....+.+..+...+......++.+++.-.+..++++|
T Consensus 158 ~~iL~--~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL 233 (335)
T PF08569_consen 158 KIILY--SECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLL 233 (335)
T ss_dssp HHHHT--SGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHH
T ss_pred HHHhC--cHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHH
Confidence 11100 11222244556666 88999899999988877532 1123445566777777788888899999999999999
Q ss_pred HHHHcc--chHHHHHhHH--HHHHHHHHhhccCCcchHHHHHHHHHHHHHHHh
Q 001791 256 IELAGT--EPRFLRRQLV--DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1012)
Q Consensus 256 ~~l~~~--~~~~~~~~~~--~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1012)
+++... ....+..|+. .-+..++..+ .+.+..++..|+.++.-++..
T Consensus 234 ~ellldr~n~~vm~~yi~~~~nLkl~M~lL--~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 234 GELLLDRSNFNVMTRYISSPENLKLMMNLL--RDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHSGGGHHHHHHHTT-HHHHHHHHHHT--T-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHchhHHHHHHHHHCCHHHHHHHHHHh--cCcchhhhHHHHHHHHHHHhC
Confidence 999843 3344555543 3444555555 345788999999999999884
No 178
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.58 E-value=0.19 Score=55.08 Aligned_cols=240 Identities=12% Similarity=0.129 Sum_probs=146.2
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch---HHHHHHHHHHc----cCCCHHHHHHHHHHHHHhcccCCCCc
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD---SLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFL 92 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~---~~~~~l~~il~----~~~~~~vr~~a~~~L~~~i~~~~~~~ 92 (1012)
|..-+.+++..+.|+|+..|......|-.+....++ .+...+..++. .......-.-...++..+++..
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf---- 206 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGF---- 206 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc----
Confidence 556788899999999999999999988775543332 22222333332 2223333333445566665542
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhh
Q 001791 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ 172 (1012)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~ 172 (1012)
-..+.++.+..+.+.++...+...-......+..++..++..+- ..-..++..++..---.+..-...-+.-+..+++
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp--~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~ 284 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP--SLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILE 284 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G--GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHH
Confidence 23567888888888888877764455567788888888887642 2334455555554444444444455667777777
Q ss_pred hHh-hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHH--HHhhcCcchHhHHHhhHHHHHHHHHHHHhcC-ChHHH
Q 001791 173 YIG-DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINF--IQCLTSSADRDRFQDLLPLMMRTLTESLNNG-NEATA 248 (1012)
Q Consensus 173 ~~~-~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~--~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~-~~~~~ 248 (1012)
.++ +.+......++..+..+++++ +.+|-..|+..+.+- +..+ .......+|.+.+.+....+.. +..+|
T Consensus 285 ~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~~~~~li-----~~~~~~i~p~i~~~L~~~~~~HWn~~Vr 358 (409)
T PF01603_consen 285 VLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNEYFLSLI-----SQNSRVILPIIFPALYRNSKNHWNQTVR 358 (409)
T ss_dssp T--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSHHHHHHH-----HCTHHHHHHHHHHHHSSTTSS-SSTTHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCHHHHHHH-----HhChHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 665 456667888999999999998 889988887666532 2222 1112234455555444333222 56789
Q ss_pred HHHHHHHHHHHccchHHHHHhHH
Q 001791 249 QEALELLIELAGTEPRFLRRQLV 271 (1012)
Q Consensus 249 ~~~~~~L~~l~~~~~~~~~~~~~ 271 (1012)
..+..++..+.+..+..+.....
T Consensus 359 ~~a~~vl~~l~~~d~~lf~~~~~ 381 (409)
T PF01603_consen 359 NLAQNVLKILMEMDPKLFDKCAQ 381 (409)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999998888877765433
No 179
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=96.51 E-value=5.2 Score=53.00 Aligned_cols=263 Identities=15% Similarity=0.141 Sum_probs=146.4
Q ss_pred HHhhCCCCChhHHHHHHHHHHHhhhhhch------hHHhhhhhhhHHHHHhhc-CCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 423 VLNSFRDPHPRVRWAAINAIGQLSTDLGP------DLQNQFHPQVLPALAGAM-DDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 423 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~il~~l~~~l-~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
+...+...++.+|..+..++..+..+... .. .++...++..++..- .+ +++.++.+....+. ..+.+.
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~-~~~v~~vl~~ll~~aia~-~~~~i~~~v~~~l~---~~~~~~ 560 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHA-LQVVKEVLSALLTVAIAD-TDPDIRIRVLSSLN---ERFDAQ 560 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchH-HHHHHHHHHHHHHHhccC-CCcchhhhHHhhhc---cchhhh
Confidence 44456677889999887777666654422 11 123555566665543 34 66776655544444 111111
Q ss_pred cccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHH---H
Q 001791 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMEC---I 572 (1012)
Q Consensus 496 ~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~---l 572 (1012)
--.+..+..+...+.+....+++.+...+|.++..-+..+.|++...+....+-+.- ... .|.. ..| .
T Consensus 561 ---laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~---sg~--~r~~-~~~a~~~ 631 (2341)
T KOG0891|consen 561 ---LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEF---SGM--ARTK-EESAKLL 631 (2341)
T ss_pred ---hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhh---cch--HHhH-HHHHHHh
Confidence 112344555666677777778888888888777654433334443332222222111 000 1111 111 1
Q ss_pred HHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCCCcccc
Q 001791 573 SLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTIT 652 (1012)
Q Consensus 573 ~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~~~~~~ 652 (1012)
..+..... ....||..+++..++..... ....+...+..+.+.++...|..+..++...++.+.+.+...
T Consensus 632 ~~~i~~~~-~~i~~~v~~~l~~~~~~~~~---~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~------ 701 (2341)
T KOG0891|consen 632 CELIISSP-VLISPYVGPILLVLLPKLQD---PSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQ------ 701 (2341)
T ss_pred hHHHHHHH-HHHHhhcCchHHHHHHHHhc---cchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHh------
Confidence 11111111 34567777777666653221 223455677889999999999888888877777776666421
Q ss_pred CCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhhcccccH--HHHHHHhccccCccCCHHHH
Q 001791 653 SADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVR 730 (1012)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~--~~~~~~l~~~l~~~~~~~vr 730 (1012)
+....+.+++++++.+....+-...||. +.++..+...+.......+|
T Consensus 702 ------------------------------s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir 751 (2341)
T KOG0891|consen 702 ------------------------------SSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIR 751 (2341)
T ss_pred ------------------------------hhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHH
Confidence 1122346778888888877766666663 56666666555444456678
Q ss_pred HHHHHhHHH
Q 001791 731 KAAVSAMPE 739 (1012)
Q Consensus 731 ~~a~~~l~~ 739 (1012)
..+...+|.
T Consensus 752 ~~~v~~~g~ 760 (2341)
T KOG0891|consen 752 REAIRLLGL 760 (2341)
T ss_pred HHHHHHhhh
Confidence 888777763
No 180
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.49 E-value=1.7 Score=47.21 Aligned_cols=302 Identities=15% Similarity=0.103 Sum_probs=148.1
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC-
Q 001791 61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN- 139 (1012)
Q Consensus 61 l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~- 139 (1012)
++.++ +.++..+...|..+|-.++... -...+......+.+.+...+.+..+...+..+..+++.+.+..-.+.
T Consensus 106 fl~lL-~~~d~~i~~~a~~iLt~l~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~ 180 (429)
T cd00256 106 FFNLL-NRQDQFIVHMSFSILAKLACFG----LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA 180 (429)
T ss_pred HHHHH-cCCchhHHHHHHHHHHHHHhcC----ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH
Confidence 33444 3568889999999999988653 12223334445555666666643334555666778888766432111
Q ss_pred Cc-chHHHHHHHhhcCC--CHHHHHHHHHHHHHhh--hhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 001791 140 GW-PELLPFMFQCVSSD--SVKLQESAFLIFAQLS--QYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ 214 (1012)
Q Consensus 140 ~~-~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~--~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~ 214 (1012)
.| .+.++.|...++.. +.+..-.++.|+=.+. ....+.+ .-..+++.+.+.++.....+|-.-++.++.+++.
T Consensus 181 f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~--~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 181 FVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVL--KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhh--ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 22 22456666655432 2233333333322221 1111111 1245777777777766456776678888888887
Q ss_pred hhcCcc-----hHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchH---HHHHhHHHHHHHHHHhhccCCc
Q 001791 215 CLTSSA-----DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR---FLRRQLVDVVGSMLQIAEAESL 286 (1012)
Q Consensus 215 ~~~~~~-----~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~---~~~~~~~~i~~~l~~~~~~~~~ 286 (1012)
.-.... ....+..-++.+++.+..- +=.|++. ...+..|.+..+.... .|+.|..++....+.-
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~r-k~~DedL-~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W------ 330 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLKTLQSLEQR-KYDDEDL-TDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW------ 330 (429)
T ss_pred cccccchhhhHHHHHHHcChHHHHHHHhcC-CCCcHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC------
Confidence 431110 1112222223333333210 0124443 3344444444433322 2444554444322211
Q ss_pred chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHH
Q 001791 287 EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1012)
Q Consensus 287 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (1012)
..-...-.||..=+. ++.+---.++..+...+... +|+ .....|..-++.++
T Consensus 331 --Sp~H~se~FW~EN~~----------kf~~~~~~llk~L~~iL~~s-~d~---------------~~laVAc~Dige~v 382 (429)
T cd00256 331 --SPVHKSEKFWRENAD----------RLNEKNYELLKILIHLLETS-VDP---------------IILAVACHDIGEYV 382 (429)
T ss_pred --CCCCCCchHHHHHHH----------HHHhcchHHHHHHHHHHhcC-CCc---------------ceeehhhhhHHHHH
Confidence 101111133433222 11111123444555554322 221 23345566677777
Q ss_pred HHcCC-CcchHH--HHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 001791 367 IALGG-NTIVPV--ASEQLPAYLAAPEWQKHHAALIALAQIA 405 (1012)
Q Consensus 367 ~~~~~-~~~~~~--~~~~l~~~l~~~~~~~r~aal~~l~~l~ 405 (1012)
.+.|. +.++.. .-..+.+++.++|..+|+.|+.+++.+.
T Consensus 383 r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 383 RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 77642 233322 3455678889999999999999999874
No 181
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.042 Score=54.61 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=104.1
Q ss_pred hHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhh
Q 001791 852 QEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEA 931 (1012)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~ 931 (1012)
.+|...-.....+..++..+++.+.+.+..++..+.+.++ +.-..+-..|+.++++++...+..+..-.+.++..++..
T Consensus 100 ~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslK-NlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~k 178 (334)
T KOG2933|consen 100 DDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLK-NLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHK 178 (334)
T ss_pred HHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666788889999999999999999998889988884 555667788999999999999998888888888888888
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHH
Q 001791 932 CNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1012)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l 997 (1012)
-...+.-||..|-.+|..++.+-.+. .+++.|.+.+.+. +..++.+++.|+.+.
T Consensus 179 a~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~------n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHS------NPRVRAKAALCFSRC 232 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhh------chhhhhhhhcccccc
Confidence 88888999999999999998875432 3555666655443 345667777666553
No 182
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.026 Score=60.25 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=116.6
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh-CCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001791 379 SEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS-FRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1012)
Q Consensus 379 ~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1012)
-.++.+++.+.+.-.|+++.+.++..--+.+. ..++..++.. .+|.+..||++|..+||-++-.-
T Consensus 518 dd~I~ell~d~ds~lRy~G~fs~alAy~GTgn------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-------- 583 (926)
T COG5116 518 DDYINELLYDKDSILRYNGVFSLALAYVGTGN------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-------- 583 (926)
T ss_pred HHHHHHHhcCchHHhhhccHHHHHHHHhcCCc------chhHhhhheeecccCchHHHHHHHHheeeeEecC--------
Confidence 34566777888999999998888765544432 2355556665 78999999999999999876422
Q ss_pred hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhh
Q 001791 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1012)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~ 537 (1012)
...++..++.|.+.-|+.||...+-+|+-.|...+.. . .+..|-.++.+++..||..|+-+++.+...+.++
T Consensus 584 -~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~---a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 584 -RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----V---ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred -cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----H---HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 2445556666665468999999999999998877632 2 2344445567888899999999999999888888
Q ss_pred hHhhHhhhhHHHHHHHhh
Q 001791 538 FQKYYDAVMPFLKAILVN 555 (1012)
Q Consensus 538 ~~~~~~~il~~l~~~l~~ 555 (1012)
+.|-+..|...+.+.+.+
T Consensus 656 Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred cChhHHHHHHHHHHHHhh
Confidence 888888888888888764
No 183
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=96.43 E-value=0.05 Score=46.37 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHHH
Q 001791 893 DKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGS-VVKPLVGEALSRLNV 971 (1012)
Q Consensus 893 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~-~~~~~~~~il~~L~~ 971 (1012)
..+...|..++..++++++.++..+..+.|++...+..++..+ ++|..|+.+-..+++...+ .+.+.+.+++-.+.+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999888888888888888777777655 9999999999999999874 466666666666655
Q ss_pred hh
Q 001791 972 VI 973 (1012)
Q Consensus 972 ~l 973 (1012)
.+
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 44
No 184
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=96.36 E-value=0.037 Score=46.69 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=76.1
Q ss_pred HHHHhHHHHHHHHHhhCCCCC--h--hHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHH
Q 001791 411 VMVKNLEQVLSMVLNSFRDPH--P--RVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1012)
Q Consensus 411 ~~~~~l~~i~~~l~~~l~d~~--~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1012)
.+.+++-.++..+-..+.|.+ . .-|..+..+++.+.+..++.+ ..+.++++.-|...+.. +..|..|+.++.
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-~~a~pQI~acL~saL~~---~eL~~~al~~W~ 79 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-SSALPQIMACLQSALEI---PELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCc---hhHHHHHHHHHH
Confidence 445666677777777777765 2 348899999999999777666 67778888888888866 679999999999
Q ss_pred HHhhcCCcccccCcHHHHHHHHHHHh
Q 001791 487 NFSENCTPEILTPYLDGIVSKLLVLL 512 (1012)
Q Consensus 487 ~l~~~~~~~~l~~~~~~il~~l~~~l 512 (1012)
.++...+.+.+.+.++.++..+.+..
T Consensus 80 ~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 80 VLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 99999987777777777766666543
No 185
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.35 E-value=2.4 Score=47.29 Aligned_cols=143 Identities=10% Similarity=0.053 Sum_probs=98.1
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH-HHHH
Q 001791 428 RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVS 506 (1012)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~-~il~ 506 (1012)
...+..++.+|+.++-.++......-....-..+...+++.+.+ +...|...+..++.+++-.+++- -..++. ..++
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~NlVmefs~~-kskfl~~ngId 464 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICNLVMEFSNL-KSKFLRNNGID 464 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhcccH-HHHHHHcCcHH
Confidence 45567788899988877766543221112334567777777788 88899999999999999877631 122332 4678
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhH--hhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 001791 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1012)
Q Consensus 507 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1012)
.+.+.+.+.+..+|..++.++-.+...+.+.+. ++-.--...+...+. ++++.+.++++..+..+.
T Consensus 465 ~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n----d~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 465 ILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN----DPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh----CCCHHHHHHHHHHHHHhh
Confidence 888888899999999999999999877765433 343444455555543 356778887777666653
No 186
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.25 E-value=0.093 Score=58.44 Aligned_cols=254 Identities=13% Similarity=0.120 Sum_probs=161.1
Q ss_pred hcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHH
Q 001791 241 NNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFIN 320 (1012)
Q Consensus 241 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 320 (1012)
.-.+.+.+..-+..|...++..++.+.. ..+.+.++..+...+...+ .+..+..+.+. -.-.+|-.
T Consensus 264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~--~kvlp~Ll~~~~~g~a~~~----~ltpl~k~~k~--------ld~~eyq~ 329 (690)
T KOG1243|consen 264 RLKSVEEKQKFFSGLIDRLDNFPEEIIA--SKVLPILLAALEFGDAASD----FLTPLFKLGKD--------LDEEEYQV 329 (690)
T ss_pred ccCcHHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhhccccchh----hhhHHHHhhhh--------cccccccc
Confidence 3446677777777777766655544332 2344444433322211111 11222222221 11234667
Q ss_pred HHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHH
Q 001791 321 RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIA 400 (1012)
Q Consensus 321 ~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~ 400 (1012)
.++|.+++++...+ ..+|-...+-+..+..++.++.+...++|.+...+.|.+...|+-.+..
T Consensus 330 ~i~p~l~kLF~~~D-----------------r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlks 392 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPD-----------------RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKS 392 (690)
T ss_pred chhhhHHHHhcCcc-----------------hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHH
Confidence 78888887765431 1233344444555566666556677889999999999999999999999
Q ss_pred HHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHH
Q 001791 401 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1012)
Q Consensus 401 l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~ 480 (1012)
+..++...+.. ..-..++..+...-.|+++.+|...-.|+|.++.++.+.... ..+.....+.+.| +-+.-|.+
T Consensus 393 m~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~---~vL~~aftralkd-pf~paR~a 466 (690)
T KOG1243|consen 393 MAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRK---RVLASAFTRALKD-PFVPARKA 466 (690)
T ss_pred HHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhc---cccchhhhhhhcC-CCCCchhh
Confidence 99998877653 122456777777777999999999999999999887654321 2223333445777 66677888
Q ss_pred HHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001791 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1012)
Q Consensus 481 a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 534 (1012)
+..++....+.+... .....|++.+....-+++..+|..+..++.......
T Consensus 467 ~v~~l~at~~~~~~~---~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 467 GVLALAATQEYFDQS---EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhHHHhhcccccchh---hhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 888888877666532 344567777777777888888988888776554443
No 187
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.11 Score=54.18 Aligned_cols=133 Identities=16% Similarity=0.228 Sum_probs=111.3
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccC
Q 001791 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1012)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (1012)
+..++..+++.+..||..|+.-+..+....+... ..+...+++.+...+.| .+..||......+..++....++.+.|
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D-~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILD-DDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcC-ccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 3456677899999999999999998887744443 45777888888888888 788999999999999887776666889
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHh
Q 001791 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1012)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~ 554 (1012)
+..-+++.+...+....+.+|..++..+..++..+++.+..+...+++.+.+.+.
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~ 192 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVIS 192 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887777667666666654
No 188
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=2.9 Score=46.98 Aligned_cols=221 Identities=12% Similarity=0.078 Sum_probs=128.3
Q ss_pred hhhhHHHHHHHhCCCh-h----HHHHHHHHh----cCCCh--HHHHHHHHHHHHhhhcCc-hHHHHH-HHHHHcc--CCC
Q 001791 6 THLQQSQLAVILGPDS-A----PFETLISHL----MSTSN--EQRSEAELLFNLCKQQDP-DSLTLK-LAHLLQR--SPH 70 (1012)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~----~l~~ll~~~----~s~d~--~~r~~A~~~L~~~~~~~p-~~~~~~-l~~il~~--~~~ 70 (1012)
.+|+-.-.++.+.|+. . ++..++.-+ ..+.. .+.+-+.+....+.+.++ +.++.. +-+++.. +++
T Consensus 19 agh~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskd 98 (892)
T KOG2025|consen 19 AGHYSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKD 98 (892)
T ss_pred cchHHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcc
Confidence 3456666777877853 2 334444422 12221 234444455555555333 223333 3344432 778
Q ss_pred HHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHH
Q 001791 71 PEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQ 150 (1012)
Q Consensus 71 ~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~ 150 (1012)
..||.-...+|..+... ...+++...+.+...++..+.+ ..+.||..+..+++.+-.. +.+.=-+....+..
T Consensus 99 k~VRfrvlqila~l~d~-----~~eidd~vfn~l~e~l~~Rl~D-rep~VRiqAv~aLsrlQ~d--~~dee~~v~n~l~~ 170 (892)
T KOG2025|consen 99 KKVRFRVLQILALLSDE-----NAEIDDDVFNKLNEKLLIRLKD-REPNVRIQAVLALSRLQGD--PKDEECPVVNLLKD 170 (892)
T ss_pred hhHHHHHHHHHHHHhcc-----ccccCHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHhcC--CCCCcccHHHHHHH
Confidence 89999999999998875 3678899999999999999996 8999999999999987542 22223334445555
Q ss_pred hhc-CCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhH
Q 001791 151 CVS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLL 229 (1012)
Q Consensus 151 ~~~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~ 229 (1012)
.++ ++++++|.+++..+.. -+.-+|.+++-..|- +..+|.-+..-+..=+... . .-+
T Consensus 171 liqnDpS~EVRRaaLsnI~v------------dnsTlp~IveRarDV-~~anRrlvY~r~lpkid~r-----~----lsi 228 (892)
T KOG2025|consen 171 LIQNDPSDEVRRAALSNISV------------DNSTLPCIVERARDV-SGANRRLVYERCLPKIDLR-----S----LSI 228 (892)
T ss_pred HHhcCCcHHHHHHHHHhhcc------------CcccchhHHHHhhhh-hHHHHHHHHHHhhhhhhhh-----h----hhH
Confidence 554 5788999999877641 122334444444554 5555554432222111110 0 011
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001791 230 PLMMRTLTESLNNGNEATAQEALELLI 256 (1012)
Q Consensus 230 ~~ll~~l~~~l~~~~~~~~~~~~~~L~ 256 (1012)
...+..+...+.+.+.+++.++...+.
T Consensus 229 ~krv~LlewgLnDRe~sVk~A~~d~il 255 (892)
T KOG2025|consen 229 DKRVLLLEWGLNDREFSVKGALVDAIL 255 (892)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 133444555666666666666655544
No 189
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=96.12 E-value=3.5 Score=46.90 Aligned_cols=175 Identities=13% Similarity=0.184 Sum_probs=110.0
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHH--Hhh-----CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC
Q 001791 355 YSVGQECLDRLAIALGGNTIVPVASEQLP--AYL-----AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1012)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~l-----~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1012)
...|...+.++...+....++..++..+. ..- .-.++..|.-.+..|..-... ....+.++..+..++
T Consensus 254 ~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-----a~~~~~~~~i~~~~l 328 (501)
T PF13001_consen 254 SDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-----ATSFPNILQIVFDGL 328 (501)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH-----HhCCccHHHHHhccc
Confidence 34555566555544433333333333333 100 013455555444444432111 134577888888888
Q ss_pred CCC--ChhHHHHHHHHH---HHhhhhhchhHHhhhhhhhHHHHHhhcC-------CCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 428 RDP--HPRVRWAAINAI---GQLSTDLGPDLQNQFHPQVLPALAGAMD-------DFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 428 ~d~--~~~vr~~a~~~l---~~l~~~~~~~~~~~~~~~il~~l~~~l~-------~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
..+ +.++|..++..+ ......+++......-+.++..+...++ +..+...|..+..+|+.+....+.
T Consensus 329 ~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~- 407 (501)
T PF13001_consen 329 YSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS- 407 (501)
T ss_pred cCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc-
Confidence 877 889999999998 7777777665534444444444444452 113567899999999999998873
Q ss_pred cccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001791 496 ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 496 ~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
.+..- -.++..|+..+.....++|..+-+|+++++.++..
T Consensus 408 l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 408 LFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred ccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 23222 35677778878888899999999999999988774
No 190
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.07 E-value=0.064 Score=49.75 Aligned_cols=72 Identities=8% Similarity=0.088 Sum_probs=59.1
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhh
Q 001791 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1012)
Q Consensus 882 ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1012)
.+..++..+++.+....+..++.++..+++..|..+.||+++++|.++..+++.+...|..-++-|+.++..
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 455566666555556667789999999999988888999999999999999988889998888888888764
No 191
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.89 E-value=4.1 Score=45.86 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=104.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCC
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~---~p~~~~~~l~~il~---~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l 96 (1012)
.+..+|+.+-++|..+|...-+-|..+... -|+.....|.+-+. .+..|.||..|...|.++=..
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d--------- 156 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD--------- 156 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC---------
Confidence 567778888899999999999988866552 33433344444332 267799999999999986422
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHH-HHHHHhhhhHh
Q 001791 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAF-LIFAQLSQYIG 175 (1012)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al-~~l~~l~~~~~ 175 (1012)
+-+....+.+.+...+..+|++.||+++...|+ .-+..+|.+++...+-+...|+... .++..+ ..-.
T Consensus 157 ~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~----------vdnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ 225 (892)
T KOG2025|consen 157 PKDEECPVVNLLKDLIQNDPSDEVRRAALSNIS----------VDNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRS 225 (892)
T ss_pred CCCCcccHHHHHHHHHhcCCcHHHHHHHHHhhc----------cCcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhh
Confidence 222233467778888888899999998654443 2234578888888777665554433 233333 1100
Q ss_pred hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001791 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1012)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1012)
. ....-+.++..++.|. +..|+.++.+.+..
T Consensus 226 l----si~krv~LlewgLnDR-e~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 226 L----SIDKRVLLLEWGLNDR-EFSVKGALVDAILS 256 (892)
T ss_pred h----hHHHHHHHHHHhhhhh-hhHHHHHHHHHHHH
Confidence 1 1334445666677776 66777766666554
No 192
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=95.82 E-value=4.6 Score=45.90 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHH--HHHHHHHHccCC-CHHHHHHHHHHHHHhcccCCCCcccCCC
Q 001791 24 FETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSL--TLKLAHLLQRSP-HPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1012)
Q Consensus 24 l~~ll~~~~s~d~~~r~~A~~~L~~~~~~---~p~~~--~~~l~~il~~~~-~~~vr~~a~~~L~~~i~~~~~~~w~~l~ 97 (1012)
|..+|..+.|++..+|+..-+-|+++.+- +|.-- +..|++...+.. ++-+|.++.++++.-+ +.++
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~--------~Rl~ 96 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGF--------DRLD 96 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhh--------hcCC
Confidence 44456666799999999999998865542 23210 356777766644 7999999999999975 4468
Q ss_pred HHHHHHHHHHHHHHHhh
Q 001791 98 LHTQSSLKSMLLQSIQL 114 (1012)
Q Consensus 98 ~~~~~~i~~~ll~~l~~ 114 (1012)
.+.+..+...+++.+..
T Consensus 97 ~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 97 DEERRELLPSLLKGISK 113 (501)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 88899999999999974
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.80 E-value=0.52 Score=54.90 Aligned_cols=230 Identities=16% Similarity=0.184 Sum_probs=140.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch--------HHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCc
Q 001791 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD--------SLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFL 92 (1012)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~--------~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~ 92 (1012)
++||.-+|+-++|. ..|-+|...|.+|..--|- ++-++.+.+|++ .-.+.|..-+.+=.+++..+
T Consensus 471 PeQLPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS-~a~ELrpiLVFIWAKILAvD---- 543 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS-SARELRPILVFIWAKILAVD---- 543 (1387)
T ss_pred hHhcchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc-chHhhhhhHHHHHHHHHhcC----
Confidence 57888888888854 6677788888887763221 123667777654 33566665555544544432
Q ss_pred ccCCCHH-HHHHHHH----HHHHHHhh--cchHhHHHHHHHHHHHHHhcccCCCCc----chHHHHHHHhhcCC-CHHHH
Q 001791 93 WPRLSLH-TQSSLKS----MLLQSIQL--ESAKSISKKLCDTVSELASNILPENGW----PELLPFMFQCVSSD-SVKLQ 160 (1012)
Q Consensus 93 w~~l~~~-~~~~i~~----~ll~~l~~--~~~~~vr~~~~~~l~~i~~~~~~~~~~----~~ll~~l~~~~~~~-~~~~r 160 (1012)
+. +.+-+|. -+++.|.. .-+++-|..+|.+|+.|+.. ++.++- ..++..++..+.++ .+-.|
T Consensus 544 -----~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n-f~lGQ~acl~~~li~iCle~lnd~~~pLLr 617 (1387)
T KOG1517|consen 544 -----PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN-FKLGQKACLNGNLIGICLEHLNDDPEPLLR 617 (1387)
T ss_pred -----chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc-cchhHHHhccccHHHHHHHHhcCCccHHHH
Confidence 11 1122222 23333332 12457899999999999886 554432 56888888888885 68899
Q ss_pred HHHHHHHHHhhhhHhhh-ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch--H-------------hH
Q 001791 161 ESAFLIFAQLSQYIGDT-LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD--R-------------DR 224 (1012)
Q Consensus 161 ~~al~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~--~-------------~~ 224 (1012)
+-.+.|||.+-+.+++. +...-..-...+...|.|+ .++||.+|+-+|+.++....+..+ . ..
T Consensus 618 QW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~ 696 (1387)
T KOG1517|consen 618 QWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTS 696 (1387)
T ss_pred HHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhh
Confidence 99999999998876542 2222233344566677887 899999999999999986422111 0 01
Q ss_pred HHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchH
Q 001791 225 FQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1012)
Q Consensus 225 ~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~ 264 (1012)
...+++..+..+...+++..+-+|......|..++..+..
T Consensus 697 ~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 697 IEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred HHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 1222222222344445556666666666666666554443
No 194
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=95.75 E-value=4 Score=44.93 Aligned_cols=229 Identities=14% Similarity=0.188 Sum_probs=115.0
Q ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhccc
Q 001791 57 LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNIL 136 (1012)
Q Consensus 57 ~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~ 136 (1012)
|+..|+..+ .+.|+.-|.....+|++++.+. ...-.-.+..+.+.+.+.+-......--..+-.+++.|... +
T Consensus 134 fi~~Ll~l~-~S~D~rER~~lk~~l~~iy~k~-----~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g-f 206 (409)
T PF01603_consen 134 FIKKLLELF-DSPDPRERDYLKTILHRIYGKF-----PNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING-F 206 (409)
T ss_dssp HHHHHHHTT-TSSTHHHHHHHHHHHHHHHHH------TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc-c
Confidence 445555544 3567777877777777776552 33223333333334443333212222222334445554442 1
Q ss_pred CCCCcchHHHHHHH----hhcCCCH-HHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001791 137 PENGWPELLPFMFQ----CVSSDSV-KLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1012)
Q Consensus 137 ~~~~~~~ll~~l~~----~~~~~~~-~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1012)
.....++...++.+ +...+.. .....-..++..+++..+. ....++..++..=--. ++.-....+.-+..
T Consensus 207 ~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~----l~~~~i~~llk~WP~t-~s~Kev~FL~el~~ 281 (409)
T PF01603_consen 207 AVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS----LAEPVIKGLLKHWPKT-NSQKEVLFLNELEE 281 (409)
T ss_dssp -SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG----GHHHHHHHHHHHS-SS--HHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCC-CchhHHHHHHHHHH
Confidence 11122333333333 2233321 1122223344444433222 2344444444432222 45555566666677
Q ss_pred HHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhh---ccCCcch
Q 001791 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIA---EAESLEE 288 (1012)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~ 288 (1012)
++..+ ....+......+.+.+..++++++..+...|+.++..-. ....+..+...+++.++..+ ...+-+.
T Consensus 282 il~~~----~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~--~~~li~~~~~~i~p~i~~~L~~~~~~HWn~ 355 (409)
T PF01603_consen 282 ILEVL----PPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEY--FLSLISQNSRVILPIIFPALYRNSKNHWNQ 355 (409)
T ss_dssp HHTT------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHH--HHHHHHCTHHHHHHHHHHHHSSTTSS-SST
T ss_pred HHHhc----CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHH--HHHHHHhChHHHHHHHHHHHHHHHHHHhhH
Confidence 76665 456778888889999999999999999999887765210 01122233334444444433 2245678
Q ss_pred HHHHHHHHHHHHHHH
Q 001791 289 GTRHLAIEFVITLAE 303 (1012)
Q Consensus 289 ~vr~~a~~~l~~l~~ 303 (1012)
.+|..+..++..+.+
T Consensus 356 ~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 356 TVRNLAQNVLKILME 370 (409)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999888888877
No 195
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.70 E-value=1.4 Score=46.65 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHccccchhhHHH----HHHhHhhhhcCC--CCHHHHHHHHHHHHHHHHHhhhhhHh----hhHhHHHHH
Q 001791 859 QVGEILGTLIKTFKAAFLPFFDE----LSSYLTPMWGKD--KTAEERRIAICIFDDVAEQCREAALK----YYETYLPFL 928 (1012)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~~~~~~----ll~~l~~~l~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~----~~~~l~~~~ 928 (1012)
.+..+++.+++..++.+.+.++. ++...+.++.++ ..|+.|..-+..+..+++.|...+.. .+..++..+
T Consensus 91 evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi 170 (319)
T PF08767_consen 91 EVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI 170 (319)
T ss_dssp HHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 37788888888888766555544 445555566443 46889999999999999998776542 577888888
Q ss_pred HhhccCCChhHHHHHHHHHHHHHhhcCC---c-----hHHHHHHHHHHHHHhhcCCCCC
Q 001791 929 LEACNDENQDVRQAAVYGLGVCAEFGGS---V-----VKPLVGEALSRLNVVIRHPNAL 979 (1012)
Q Consensus 929 l~~l~~~~~~vr~~a~~~lg~l~~~~~~---~-----~~~~~~~il~~L~~~l~~~~~~ 979 (1012)
.-++++.+.+|...++.++..++.+... . ++.|+-.+++.+..++.++..+
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk 229 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHK 229 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-G
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccH
Confidence 8899999999999999999999988754 1 4556778889999998887643
No 196
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=1.2 Score=55.01 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHH
Q 001791 186 HAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF 265 (1012)
Q Consensus 186 ~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 265 (1012)
+..+++-|... ++.++..|++.+..++... +.+.....+|.+......++.+.+..+|.....++..+.....+.
T Consensus 43 l~~I~kkL~Kk-D~~TK~KaL~eL~eli~~~----~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKR-DETTKIKALQELSELIDTS----DTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKK 117 (1312)
T ss_pred HHHHHHHHhcc-ChHHHHHHHHhHHHhcccc----cchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 8899999999999998765 334444467788888888888999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHH
Q 001791 266 LRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITL 301 (1012)
Q Consensus 266 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l 301 (1012)
+.||+..+++..+... -+.+-.+...|...+...
T Consensus 118 lsp~LK~li~~wl~~~--~d~~~~vs~aa~~sf~~~ 151 (1312)
T KOG0803|consen 118 LSPFLKSLIPPWLGGQ--FDLDYPVSEAAKASFKDG 151 (1312)
T ss_pred hhHHHHhhhhhhhhee--cccchHHHHHHHHHHHhh
Confidence 9999999998765433 344555666555554443
No 197
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.55 E-value=6.6 Score=45.83 Aligned_cols=132 Identities=11% Similarity=0.231 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001791 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1012)
..+|.-+...++.++-...+ .....+|.+.+.|. .+...+|.....+++.+|.... ...+..+|.+-.+|
T Consensus 945 ~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----am~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----AMTDRYIPMIAASL 1015 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----HHHHHhhHHHHHHh
Confidence 45666777777776654432 34557788887774 4566788877777777775442 24567788889999
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001791 470 DDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 470 ~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
.| +.+-||..++..|.+++..- +..+-..++=.++..+-+.++.+|..+--+++.+...-..
T Consensus 1016 ~D-p~~iVRrqt~ilL~rLLq~~----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1016 CD-PSVIVRRQTIILLARLLQFG----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred cC-chHHHHHHHHHHHHHHHhhh----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 99 99999999999999998621 2244444444444555567889999999999998865443
No 198
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.43 E-value=0.78 Score=45.31 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=87.1
Q ss_pred HHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-----CChHHHHHHHHHHHH
Q 001791 413 VKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----QNPRVQAHAASAVLN 487 (1012)
Q Consensus 413 ~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~~~~v~~~a~~al~~ 487 (1012)
.-+++.++..+ +...+...|.+|+.++.. ..-+++++|..+..+++. .+..+-.........
T Consensus 196 q~YF~kvisal---~dEs~~~~r~aAl~sLr~----------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~s 262 (450)
T COG5095 196 QMYFDKVISAL---LDESDEQTRDAALESLRN----------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSS 262 (450)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcc----------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555555554 445578899999887754 223445555555444330 112233333344444
Q ss_pred HhhcCCcccccCcHHHHHHHHHHHhhc------C----ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcc
Q 001791 488 FSENCTPEILTPYLDGIVSKLLVLLQN------G----KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNAT 557 (1012)
Q Consensus 488 l~~~~~~~~l~~~~~~il~~l~~~l~~------~----~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~ 557 (1012)
++++-. -.+.||+.++||.++.++-. + ...+|.-|...++.+.+.++.......+.+..-+...+-...
T Consensus 263 LL~N~~-iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 263 LLKNKY-IFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred HhcCCc-eeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc
Confidence 555443 45679999999998887621 1 235888899999999888887655555666655555543321
Q ss_pred ccccchhhHHHHHHHHHHHhh
Q 001791 558 DKSNRMLRAKSMECISLVGMA 578 (1012)
Q Consensus 558 ~~~~~~lr~~a~~~l~~l~~~ 578 (1012)
. ...-.-.|+.+++.+...
T Consensus 342 k--~~sT~YGalkgls~l~ke 360 (450)
T COG5095 342 K--TESTQYGALKGLSILSKE 360 (450)
T ss_pred c--ccchhhhhhhhhhhhchh
Confidence 1 111223466777766543
No 199
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.41 E-value=0.34 Score=54.24 Aligned_cols=189 Identities=11% Similarity=0.096 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhcc
Q 001791 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLT 179 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~ 179 (1012)
++..+-..+++.+.. ++..+|-.+.+-+..++.+..+...-..++|++...+.+.++.+|+-.+.++..++..++..
T Consensus 327 yq~~i~p~l~kLF~~-~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS-PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred cccchhhhHHHHhcC-cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 555677778888876 78888888877777777765443333567888888888888888888888888887776554
Q ss_pred ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 001791 180 PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA 259 (1012)
Q Consensus 180 ~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~ 259 (1012)
..-..++..+...-.|+ ...+|....-|++++..+.. ...-.. .+...+...+.++-...|..+...+....
T Consensus 404 ~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~----~~~R~~---vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLA----ASVRKR---VLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred hhcHHHHHHHHhhCccc-cCcccccceeeecccccccc----hhhhcc---ccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 12345555555544454 67888888888887776642 111111 12223333555666667777777777665
Q ss_pred ccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
+.++. ......|++.+.-.. .+.+..+|..|...|..+..
T Consensus 476 ~~~~~--~~va~kIlp~l~pl~--vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFDQ--SEVANKILPSLVPLT--VDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccch--hhhhhhccccccccc--cCcccchhhHHHHHHHHHHh
Confidence 54432 122223333332221 34566778888777766554
No 200
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=3.9 Score=42.34 Aligned_cols=170 Identities=22% Similarity=0.212 Sum_probs=110.2
Q ss_pred cCCChHHHHHHHHHHHHhhhcCchH--------HHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHH-
Q 001791 32 MSTSNEQRSEAELLFNLCKQQDPDS--------LTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQS- 102 (1012)
Q Consensus 32 ~s~d~~~r~~A~~~L~~~~~~~p~~--------~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~- 102 (1012)
.+.+.+.+..|-..|.++.++ -+. ....++.. .++.++++|..|+-.+...+..+ |..++
T Consensus 93 ~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~-l~~~~~~lR~~Aa~Vigt~~qNN---------P~~Qe~ 161 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGY-LENSDAELRELAARVIGTAVQNN---------PKSQEQ 161 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHH-hcCCcHHHHHHHHHHHHHHHhcC---------HHHHHH
Confidence 455788899999999887763 211 12333333 35788999999999999998876 22222
Q ss_pred ----HHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-------CCcchHHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 001791 103 ----SLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-------NGWPELLPFMFQCVSS--DSVKLQESAFLIFAQ 169 (1012)
Q Consensus 103 ----~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-------~~~~~ll~~l~~~~~~--~~~~~r~~al~~l~~ 169 (1012)
.-.+.|+..+.++.+..+|..+-.+++.+.+...|. +.|. .|...+++ .+...+.-++..++.
T Consensus 162 v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~----~L~~vl~~~~~~~~lkrK~~~Ll~~ 237 (342)
T KOG2160|consen 162 VIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQ----VLRDVLQSNNTSVKLKRKALFLLSL 237 (342)
T ss_pred HHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHH----HHHHHHHcCCcchHHHHHHHHHHHH
Confidence 234578888888788889999999999998875431 2333 34445555 345667778888888
Q ss_pred hhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh
Q 001791 170 LSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL 216 (1012)
Q Consensus 170 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~ 216 (1012)
+.+....+-...-...++.....+....+..++..++.++...+...
T Consensus 238 Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 238 LLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 87764332111223333433333333336788888888887777654
No 201
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.40 E-value=0.23 Score=40.73 Aligned_cols=84 Identities=24% Similarity=0.312 Sum_probs=67.8
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHh
Q 001791 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQK 540 (1012)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 540 (1012)
.+...+..++| +.+.+|..+...|..+++... . .....+.++..+...++++++.+--.|+.++..++...++
T Consensus 4 ~~~~al~~L~d-p~~PvRa~gL~~L~~Li~~~~-~-~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~---- 76 (92)
T PF10363_consen 4 TLQEALSDLND-PLPPVRAHGLVLLRKLIESKS-E-PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD---- 76 (92)
T ss_pred HHHHHHHHccC-CCcchHHHHHHHHHHHHHcCC-c-chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----
Confidence 45566777888 889999999999999998776 2 2356789999999999999999999999999999988764
Q ss_pred hHhhhhHHHHHHHh
Q 001791 541 YYDAVMPFLKAILV 554 (1012)
Q Consensus 541 ~~~~il~~l~~~l~ 554 (1012)
.+++.|.+.+.
T Consensus 77 ---~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ---EVLPILLDEYA 87 (92)
T ss_pred ---HHHHHHHHHHh
Confidence 35555555543
No 202
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=95.39 E-value=0.33 Score=50.34 Aligned_cols=146 Identities=12% Similarity=0.194 Sum_probs=98.4
Q ss_pred CCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc----c--ccHHHHHHHHHHhhc--------CCCChHHHHH
Q 001791 139 NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL----T--PHLKHLHAVFLNCLT--------NSNNPDVKIA 204 (1012)
Q Consensus 139 ~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~----~--~~~~~l~~~l~~~l~--------~~~~~~vr~~ 204 (1012)
..|+-++|.++.++.+.++..|..|+.++..+.+..+... . ....-+.+.+.+++. ++ +..+-..
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~-s~~Ll~~ 193 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE-SLELLQA 193 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh-hHHHHHH
Confidence 5899999999999999999999999999999998765432 1 123334455555554 33 5677788
Q ss_pred HHHHHHHHHHhhcCcch---HhHHHhhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHh
Q 001791 205 ALNAVINFIQCLTSSAD---RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQI 280 (1012)
Q Consensus 205 a~~~l~~~~~~~~~~~~---~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~ 280 (1012)
+..|+..++........ ...+...+ ..+++.+....+.+.+..+...++.+..++..-+.....|+..++..+.+.
T Consensus 194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999998775422111 11122211 113332222221224778888888888888877778888999999988887
Q ss_pred hccCC
Q 001791 281 AEAES 285 (1012)
Q Consensus 281 ~~~~~ 285 (1012)
+.++.
T Consensus 274 l~npf 278 (282)
T PF10521_consen 274 LENPF 278 (282)
T ss_pred hcCCC
Confidence 76553
No 203
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=95.33 E-value=6.5 Score=44.34 Aligned_cols=244 Identities=14% Similarity=0.052 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHhhhcCchHHHHHHHHHHc----cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHH
Q 001791 37 EQRSEAELLFNLCKQQDPDSLTLKLAHLLQ----RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (1012)
Q Consensus 37 ~~r~~A~~~L~~~~~~~p~~~~~~l~~il~----~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l 112 (1012)
..|-+|-+.|.+..+..|-.-+..+++... .+.++++|+.|..+|..+++.. ... -...|..+++.+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~----~~~-----~~~~R~~fF~~I 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQ----DSS-----SGLMRAEFFRDI 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHcc----ccc-----cHHHHHHHHHHH
Confidence 345566666654333244233344444433 3667899999999999999875 111 224566777777
Q ss_pred hhcchHhHHHHHHHHHHHHHhcccCC-CCcchHHHHHHHhhcCCC---------------------------HHHHHHHH
Q 001791 113 QLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDS---------------------------VKLQESAF 164 (1012)
Q Consensus 113 ~~~~~~~vr~~~~~~l~~i~~~~~~~-~~~~~ll~~l~~~~~~~~---------------------------~~~r~~al 164 (1012)
.....+..-..-..++..+....-.- +.-.++.|.+..++...- ...-...+
T Consensus 76 ~~~~~~~d~~~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll 155 (464)
T PF11864_consen 76 SDPSNDDDFDLRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLL 155 (464)
T ss_pred hcCCCchhHHHHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHH
Confidence 65333322233334455444432111 123455666665553110 00111122
Q ss_pred HHHHHhhhhHhhhcc-ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcC
Q 001791 165 LIFAQLSQYIGDTLT-PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1012)
Q Consensus 165 ~~l~~l~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~ 243 (1012)
..+..+++.-...+. ..+..++..+...-..+.+...-..+++.+..++.+-.- -.+.++.++..|+...+..
T Consensus 156 ~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~i------P~~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 156 QFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDI------PSESLSPCIEVLCSIVNSV 229 (464)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcC------ChHHHHHHHHHHhhHhccc
Confidence 223333332111111 234555544443323332444456788888888775211 1234556778888765433
Q ss_pred ChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccC----CcchHHHHHHHHHHHHHHH
Q 001791 244 NEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAE----SLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 244 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~vr~~a~~~l~~l~~ 303 (1012)
+....+.+++..++.... ....+..++.++.+. ..+..+-..|+.++..+.-
T Consensus 230 --~l~~~~w~~m~nL~~S~~------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~ 285 (464)
T PF11864_consen 230 --SLCKPSWRTMRNLLKSHL------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLW 285 (464)
T ss_pred --ccchhHHHHHHHHHcCcc------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHh
Confidence 566677788887775432 123444455555211 1233344567777777655
No 204
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.29 E-value=5.5 Score=43.32 Aligned_cols=276 Identities=13% Similarity=0.132 Sum_probs=142.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHHHccch--HHHHH
Q 001791 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-------GNEATAQEALELLIELAGTEP--RFLRR 268 (1012)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-------~~~~~~~~~~~~L~~l~~~~~--~~~~~ 268 (1012)
+..-|..|...|........+..+.....+.++.+++.+..-+.. .+.....+|+++|+.+..... ..+..
T Consensus 6 ~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~ 85 (372)
T PF12231_consen 6 DRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSD 85 (372)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCCh
Confidence 455677777777777776655445666677777777777665543 255677889999998874331 11111
Q ss_pred -hHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCc
Q 001791 269 -QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDE 347 (1012)
Q Consensus 269 -~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~e 347 (1012)
...-++...+..+.++..+..+...++.++.. ++..+... .......++..+
T Consensus 86 d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~----Q~f~~~~~--~~~~~~~l~~~l--------------------- 138 (372)
T PF12231_consen 86 DFASFIIDHSIESLQNPNSPKSICTHYLWCLSD----QKFSPKIM--TSDRVERLLAAL--------------------- 138 (372)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCCCccc--chhhHHHHHHHH---------------------
Confidence 11124444444444333333333322222211 00111000 000111111111
Q ss_pred cccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC
Q 001791 348 DAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF 427 (1012)
Q Consensus 348 d~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l 427 (1012)
..+-+.+ +.-.+-...+.++..+....+..+..+...=++.++..+
T Consensus 139 ---------------~~i~~~~-------------------~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l 184 (372)
T PF12231_consen 139 ---------------HNIKNRF-------------------PSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL 184 (372)
T ss_pred ---------------HHhhccC-------------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 112233344556666667777777777776777888888
Q ss_pred CCCChhHHHHHHHHHHHhhhhhchhHH-h--------------hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC
Q 001791 428 RDPHPRVRWAAINAIGQLSTDLGPDLQ-N--------------QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1012)
Q Consensus 428 ~d~~~~vr~~a~~~l~~l~~~~~~~~~-~--------------~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1012)
-+....+|..|..+...+...+++... . .+.+.+.+.+.+.+.+..+....-..-.++..++...
T Consensus 185 ~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~ 264 (372)
T PF12231_consen 185 LSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSS 264 (372)
T ss_pred hhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCc
Confidence 788888888877776666655544210 0 0112222223333333111111112222233333211
Q ss_pred CcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 001791 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 493 ~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~ 535 (1012)
. -.--+++...+...-.+++++++.+|..|+.+-..++....
T Consensus 265 ~-~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~ 306 (372)
T PF12231_consen 265 R-LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASN 306 (372)
T ss_pred h-hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 11236777777777788888899999999999999988554
No 205
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.23 E-value=4 Score=43.04 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=52.1
Q ss_pred HHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhh--hhHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 418 QVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 418 ~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
.++..++..|... +|.+-..||.=||.+.++.|..- ..+. ..=..+++.+++ ++++||.+|+.|+..++.
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk--~vv~k~ggKe~vM~Llnh-~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK--AVVEKYGGKERVMNLLNH-EDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh--HHHHHhchHHHHHHHhcC-CCchHHHHHHHHHHHHHh
Confidence 4677777777654 48899999999999998876432 1111 223456777888 999999999999988864
No 206
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.22 E-value=4.1 Score=42.33 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=79.0
Q ss_pred hcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHH
Q 001791 407 GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1012)
Q Consensus 407 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1012)
..+..+.+.++.++..+++++.|++..+...+...+..+...+++.. + +..+...+.. +|.+|..|...+.
T Consensus 127 pL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~---F----~~~lwl~ii~--sp~~Rl~al~~l~ 197 (307)
T PF04118_consen 127 PLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY---F----WQCLWLCIIT--SPSRRLGALNYLL 197 (307)
T ss_pred CccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH---H----HHHHHHHHhc--CcchhHHHHHHHH
Confidence 33445667888899999999999999999999999999998876642 3 3444444333 6889999888887
Q ss_pred HHhhcCC-----------cccccCcHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001791 487 NFSENCT-----------PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1012)
Q Consensus 487 ~l~~~~~-----------~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l 527 (1012)
.-+.... ...+.+--.-++..+...+++.+.-|++.++..+
T Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlL 249 (307)
T PF04118_consen 198 RRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLL 249 (307)
T ss_pred HhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 7665443 1123344555677778888887777776666544
No 207
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=95.22 E-value=6.4 Score=43.62 Aligned_cols=74 Identities=15% Similarity=0.285 Sum_probs=52.4
Q ss_pred CCcchHHHHHHHhhc-CCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001791 139 NGWPELLPFMFQCVS-SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1012)
Q Consensus 139 ~~~~~ll~~l~~~~~-~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1012)
..+|+++..+.+.+. +.++...++.+..+..+++.+|-++. +...++.++.+-+.+ .++.|...++||..++.-
T Consensus 188 ~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl~yI-feTnIieLv~~~f~s--~pd~r~~tl~CLtEi~~L 262 (1053)
T COG5101 188 IEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPLDYI-FETNIIELVLEHFNS--MPDTRVATLSCLTEIVDL 262 (1053)
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCchhHH-HHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHhh
Confidence 356677766666664 34667778888888888888775432 456677777766655 567888999999988764
No 208
>PF05536 Neurochondrin: Neurochondrin
Probab=95.20 E-value=7.6 Score=44.44 Aligned_cols=238 Identities=14% Similarity=0.146 Sum_probs=139.1
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHH--H-HhHHHH-HHHHHhhCCC-------CChhHHHHHHHHHHHhh
Q 001791 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVM--V-KNLEQV-LSMVLNSFRD-------PHPRVRWAAINAIGQLS 446 (1012)
Q Consensus 378 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~--~-~~l~~i-~~~l~~~l~d-------~~~~vr~~a~~~l~~l~ 446 (1012)
.+..+..++++.+-..|.+++..+..+..+....- . ...+.+ .+++-+.|+. +....+..|...+..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 45556677888888899999999999987644211 1 111111 1223333332 23556778888888888
Q ss_pred hhhchhH-HhhhhhhhHHHHHhhcCCCCCh-HHHHHHHHHHHHHhhcCCc-ccccCcHHHHHHHHHHHhhcCChhHHHHH
Q 001791 447 TDLGPDL-QNQFHPQVLPALAGAMDDFQNP-RVQAHAASAVLNFSENCTP-EILTPYLDGIVSKLLVLLQNGKQMVQEGA 523 (1012)
Q Consensus 447 ~~~~~~~-~~~~~~~il~~l~~~l~~~~~~-~v~~~a~~al~~l~~~~~~-~~l~~~~~~il~~l~~~l~~~~~~v~~~a 523 (1012)
. .++. ..+.+-.-+|.+++.+.. ... .+...|..+|..+...-.. ..+. -...++.|.+.+.+ .....+.+
T Consensus 86 ~--~~~~a~~~~~~~~IP~Lle~l~~-~s~~~~v~dalqcL~~Ias~~~G~~aLl--~~g~v~~L~ei~~~-~~~~~E~A 159 (543)
T PF05536_consen 86 R--DPELASSPQMVSRIPLLLEILSS-SSDLETVDDALQCLLAIASSPEGAKALL--ESGAVPALCEIIPN-QSFQMEIA 159 (543)
T ss_pred C--ChhhhcCHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHHHcCcHhHHHHH--hcCCHHHHHHHHHh-CcchHHHH
Confidence 6 3332 134566788999998877 444 7888899999999843321 1111 11345555555554 55668888
Q ss_pred HHHHHHHHHHhHhhh----HhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChh-----hhhhhHHHHHHH
Q 001791 524 LTALASVADSSQEHF----QKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKD-----KFRDDAKQVMEV 594 (1012)
Q Consensus 524 ~~~l~~l~~~~~~~~----~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~-----~~~~~~~~i~~~ 594 (1012)
+..+..+....+... ...+..+++.+...+.... ...+-.+++.++.+....+.. .-......+...
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~----~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFH----GEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 998888877666322 1233455555555554322 223444566666665444210 111234455555
Q ss_pred HHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCC
Q 001791 595 LMSLQGSQMETDDPTTSYMLQAWARLCKCLGQD 627 (1012)
Q Consensus 595 l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 627 (1012)
+..+..+... ...|..++...+.+...+|.+
T Consensus 236 l~~iL~sr~~--~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 236 LRDILQSRLT--PSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHhcCCC--HHHHHHHHHHHHHHHHHhChH
Confidence 5554433322 345777788888888888865
No 209
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=12 Score=46.57 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChh
Q 001791 859 QVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQD 938 (1012)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~ 938 (1012)
-+..|++...-..++.+.|+..+++ ... ++++...|..|++.+..++...|+...+.+++++|.+.+.+.|.+..
T Consensus 1523 ~li~~i~~~~~a~~~d~~pl~~k~l----~~t-rss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~ 1597 (1621)
T KOG1837|consen 1523 LLIAEIASDSVADKDDLKPLNQKIL----KKT-RSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDE 1597 (1621)
T ss_pred HHHHHHHhhccCChhhhHHHHHHHH----HHh-ccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHH
Confidence 3455555555555555556555543 222 35667889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCchHHH
Q 001791 939 VRQAAVYGLGVCAEFGGSVVKPL 961 (1012)
Q Consensus 939 vr~~a~~~lg~l~~~~~~~~~~~ 961 (1012)
|...+...+..+-...|+.+++|
T Consensus 1598 Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1598 VECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHHhchhhhhc
Confidence 99999888888877777765544
No 210
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=95.15 E-value=3.2 Score=43.85 Aligned_cols=102 Identities=12% Similarity=0.196 Sum_probs=75.0
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHH----HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-------hHHhhh
Q 001791 389 PEWQKHHAALIALAQIAEGCAKVMV----KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-------DLQNQF 457 (1012)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~----~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~ 457 (1012)
.-+..|..-...+..+...+...+. ..+..++..+..++++++..|...++.++..+.+.... .+...|
T Consensus 132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y 211 (319)
T PF08767_consen 132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQY 211 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3489999999999999988765443 45678889999999999999999999999988877654 233456
Q ss_pred hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
+-.++..++..+.|..+...-...+..|..++.
T Consensus 212 ~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 212 YLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 666777777777773444444555566777664
No 211
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.11 E-value=0.71 Score=52.02 Aligned_cols=172 Identities=15% Similarity=0.168 Sum_probs=104.1
Q ss_pred cchHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001791 373 TIVPVASEQLPAYLAA-PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 373 ~~~~~~~~~l~~~l~~-~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
.+.+.++|.+...++- ..-+.+..-+.-+..+.+..+. ....+.++|.|...+++....++..++..+..+++.+.-
T Consensus 345 ~~~~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~--e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~ 422 (700)
T KOG2137|consen 345 EFGPKMLPALKPIYSASDPKQALLFILENMDLLKEKTPP--EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV 422 (700)
T ss_pred hhhhhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh--HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH
Confidence 3344455555544442 2222222222223333443332 135678999999999999999999999999999988753
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
.+ .-..++|.+....-...+..|+..++.|++.+++.+... ..++ .+..+.++.+..++.+....+.....++
T Consensus 423 ~~---vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~---~v~d-~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 423 PF---VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA---AVLD-ELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HH---HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH---HhHH-HHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 32 345678887665333278899999999999999777632 2233 3445555666667777766666665555
Q ss_pred HHhHhhhHhhHhhhhHHHHHHH
Q 001791 532 DSSQEHFQKYYDAVMPFLKAIL 553 (1012)
Q Consensus 532 ~~~~~~~~~~~~~il~~l~~~l 553 (1012)
........-....++|.+..+.
T Consensus 496 ~~~~~g~ev~~~~VlPlli~ls 517 (700)
T KOG2137|consen 496 LIIYSGVEVMAENVLPLLIPLS 517 (700)
T ss_pred hhcccceeeehhhhhhhhhhhh
Confidence 4332211112245566555543
No 212
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=95.11 E-value=2.4 Score=47.94 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=72.2
Q ss_pred CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCc
Q 001791 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSS 219 (1012)
Q Consensus 140 ~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~ 219 (1012)
.-..++|.|...+.+.+..+++.++..+..+.+.++-.+ .-..++|.+.+......+..++..++-|+..+++.++
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~--vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-- 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPF--VKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-- 461 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHH--HHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--
Confidence 335567777777777778888888888888888776432 2355666666654333477888888888888887652
Q ss_pred chHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 001791 220 ADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1012)
Q Consensus 220 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~ 261 (1012)
... .++.++ .+..+.+..++.+....+++...++-.
T Consensus 462 --~~~---v~d~~l-pi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 462 --KAA---VLDELL-PILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred --HHH---hHHHHH-HHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 211 222222 234455566777777777777666543
No 213
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=95.09 E-value=0.25 Score=52.62 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhcc----------CCChhHHHHHHHHHHHHHhhcCCchHHHHHH
Q 001791 895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN----------DENQDVRQAAVYGLGVCAEFGGSVVKPLVGE 964 (1012)
Q Consensus 895 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~----------~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~ 964 (1012)
+...-...++++..|+.+-.-.+.+|+.+++|.++.++- +..+.+|..|+..|+.++...+.......+.
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 344455677888888888777889999999999998872 3457899999999999999998877777888
Q ss_pred HHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHH
Q 001791 965 ALSRLNVVIRHPNALQPENLMAYDNAVSALGKI 997 (1012)
Q Consensus 965 il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l 997 (1012)
+...|...+.++.. ...+.=.|+.+++.+
T Consensus 310 i~~tl~k~l~d~~~----~~~~~YGAi~GL~~l 338 (343)
T cd08050 310 ITRTLLKALLDPKK----PLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCC----CcchhhHHHHHHHHh
Confidence 88888888887753 233344455555544
No 214
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=95.02 E-value=0.12 Score=47.69 Aligned_cols=126 Identities=13% Similarity=0.097 Sum_probs=90.0
Q ss_pred chhhHHHHHHhHhhhhcC-----------------CCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCCh
Q 001791 875 FLPFFDELSSYLTPMWGK-----------------DKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQ 937 (1012)
Q Consensus 875 ~~~~~~~ll~~l~~~l~~-----------------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~ 937 (1012)
+.|++..++|.+.....- |.--+.|..|+.++..++..+...+. +..++..+..+|.| +.
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~--~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRID--ISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS---HHHHHHHHHHTTSS--H
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHhhcCC-cH
Confidence 356777777777764321 22356899999999999998776553 55668888899999 99
Q ss_pred hHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCC------CchhhhhHHHHHHHHHHHHhHccC
Q 001791 938 DVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNAL------QPENLMAYDNAVSALGKICQFHRD 1003 (1012)
Q Consensus 938 ~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~------~~~~~~~~~na~~~~~~l~~~~p~ 1003 (1012)
+||--+.-.+..++...+..+.+.+..+...|...+..+.+. .+...+....++.++..+-...|+
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~ 151 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPG 151 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999999999999999999888888888888888888754432 135566777777777777444443
No 215
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.88 E-value=1.7 Score=46.02 Aligned_cols=201 Identities=19% Similarity=0.204 Sum_probs=105.6
Q ss_pred CchHHHHHHHHHHccC-CCHHHHHHHHHHHHHhcccCCCCcccCC---CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHH
Q 001791 53 DPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDDSFLWPRL---SLHTQSSLKSMLLQSIQLESAKSISKKLCDTV 128 (1012)
Q Consensus 53 ~p~~~~~~l~~il~~~-~~~~vr~~a~~~L~~~i~~~~~~~w~~l---~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l 128 (1012)
+.+.+...++.++.+- .++.+.+....++..++...+ .....+ ........-..+++.+.+ ++..++..++.++
T Consensus 52 ~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iL 129 (312)
T PF03224_consen 52 DGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFIL 129 (312)
T ss_dssp ----------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHH
Confidence 3445556666666654 789999999999999887752 111111 111111144567776665 7999999999999
Q ss_pred HHHHhcccCCCCcc---hHHHHHHHhhcC----CCHHHHHHHHHHHHHhhhhHh--hhccccHHHHHHHHHHhh------
Q 001791 129 SELASNILPENGWP---ELLPFMFQCVSS----DSVKLQESAFLIFAQLSQYIG--DTLTPHLKHLHAVFLNCL------ 193 (1012)
Q Consensus 129 ~~i~~~~~~~~~~~---~ll~~l~~~~~~----~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l------ 193 (1012)
+.++..... ..-. +.++.+++.+.+ ++.+....++.++..+...-. ..+.. ...++.+.+.+
T Consensus 130 t~Ll~~~~~-~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~ 206 (312)
T PF03224_consen 130 TSLLSQGPK-RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATN 206 (312)
T ss_dssp HHHHTSTTT---HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH-----
T ss_pred HHHHHcCCc-cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhccc
Confidence 999986543 2333 677888777765 334566888899988875422 22211 34444444455
Q ss_pred cCCCChHHHHHHHHHHHHHHHhhcCcchHhHH--HhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchH
Q 001791 194 TNSNNPDVKIAALNAVINFIQCLTSSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPR 264 (1012)
Q Consensus 194 ~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~ 264 (1012)
.+..+.++...++-|+--+. +... ....+ ...+|.+++.+.. ...+.+..-++.+|..+++..+.
T Consensus 207 ~~~~~~Ql~Y~~ll~lWlLS--F~~~-~~~~~~~~~~i~~L~~i~~~---~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 207 SNSSGIQLQYQALLCLWLLS--FEPE-IAEELNKKYLIPLLADILKD---SIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp ----HHHHHHHHHHHHHHHT--TSHH-HHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHTTSSSST
T ss_pred CCCCchhHHHHHHHHHHHHh--cCHH-HHHHHhccchHHHHHHHHHh---cccchHHHHHHHHHHHHHhccHH
Confidence 22224556666666665433 2111 11111 1245555555544 33667888889999998877664
No 216
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.84 E-value=0.37 Score=53.43 Aligned_cols=149 Identities=15% Similarity=0.142 Sum_probs=107.0
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhh-----cHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHH
Q 001791 380 EQLPAYLAAPEWQKHHAALIALAQIAEG-----CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQ 454 (1012)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~-----~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 454 (1012)
|.+-..++-+|..+|..|+..+-.+.-- ..+.+...+++-...+...|+|+.|.||..|..-+.++...+-.-+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 4555677889999999888877765432 12345566677778889999999999999987776665544332221
Q ss_pred hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 455 NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 455 ~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
...+..++..+...+.......||.+....|..++.+-. -.+.++.+++.+-..+.+....||.++...+..+-
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 233445555555555433567899999999999887543 24788899999999999999999998888876653
No 217
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.84 E-value=2 Score=46.90 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=99.9
Q ss_pred HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-------CChHHHHHHHHHHH
Q 001791 414 KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-------QNPRVQAHAASAVL 486 (1012)
Q Consensus 414 ~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-------~~~~v~~~a~~al~ 486 (1012)
-|+.+|...+ ...++..|..|+.+|.. +.-+.+++|.+...+.+. .+-..-......+.
T Consensus 207 lYy~~It~a~----~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~r 272 (576)
T KOG2549|consen 207 LYYKEITEAC----TGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVR 272 (576)
T ss_pred HHHHHHHHHH----hcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHH
Confidence 3444454444 44788899999988765 223445555555554431 12233334444455
Q ss_pred HHhhcCCcccccCcHHHHHHHHHHHhhc----------CChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc
Q 001791 487 NFSENCTPEILTPYLDGIVSKLLVLLQN----------GKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1012)
Q Consensus 487 ~l~~~~~~~~l~~~~~~il~~l~~~l~~----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~ 556 (1012)
.++++-. -.+.||+..+++.++.|+-. .+..+|.-|...+..++..++.......+.|...+...|.+.
T Consensus 273 SLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~ 351 (576)
T KOG2549|consen 273 SLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDN 351 (576)
T ss_pred HHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCC
Confidence 5555443 45789999999999987632 346799999999999999888766666677777777777642
Q ss_pred cccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHH
Q 001791 557 TDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1012)
Q Consensus 557 ~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 595 (1012)
. ....-.-.++.++..++..+-+-.+.|.+......+
T Consensus 352 ~--~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l 388 (576)
T KOG2549|consen 352 K--KPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERL 388 (576)
T ss_pred C--CCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHh
Confidence 2 223333345666666654332233445554444433
No 218
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.82 E-value=0.16 Score=41.59 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=63.2
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHhHccC
Q 001791 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQFHRD 1003 (1012)
Q Consensus 924 l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~~~p~ 1003 (1012)
.+...+..++|+.+.||..|+..|..+++... ......+.++..+...+.++ +.-+.-||+.+++.++..+|.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~------DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE------DSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC------CchHHHHHHHHHHHHHHHChH
Confidence 45567778899999999999999999999987 23345788999999999776 467999999999999999988
Q ss_pred CC
Q 001791 1004 SI 1005 (1012)
Q Consensus 1004 ~~ 1005 (1012)
.+
T Consensus 77 ~v 78 (92)
T PF10363_consen 77 EV 78 (92)
T ss_pred HH
Confidence 53
No 219
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.76 Score=48.07 Aligned_cols=131 Identities=14% Similarity=0.169 Sum_probs=101.8
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch
Q 001791 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1012)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 221 (1012)
...+..++..+...+.++|..|+.-+..+....+..+..+...+++.+.....|. +..||....+.+..++....
T Consensus 57 ~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~---- 131 (393)
T KOG2149|consen 57 GLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPAC---- 131 (393)
T ss_pred cccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcc----
Confidence 3346777777888899999999999998888866666656777778777777887 88999999999998877652
Q ss_pred HhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHH
Q 001791 222 RDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1012)
Q Consensus 222 ~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l 277 (1012)
.+....+++.++..+..++..-.+++|.-++..|.-++..|++.+..+...+++..
T Consensus 132 ~e~~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~ 187 (393)
T KOG2149|consen 132 KEDQSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENF 187 (393)
T ss_pred hhhhcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 22355667777888887777778999999999999999999877665544444433
No 220
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.65 E-value=3.2 Score=40.80 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=56.1
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC--CCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001791 383 PAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1012)
Q Consensus 383 ~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1012)
.+.+..++.-.|+.+.+.||++-... -+|.+.+.|. .++|-||.-|+.+||.++. +.
T Consensus 193 ~~~l~~~SalfrhEvAfVfGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~ 251 (289)
T KOG0567|consen 193 IDGLADDSALFRHEVAFVFGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------ED 251 (289)
T ss_pred HHhcccchHHHHHHHHHHHhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HH
Confidence 33444456667788888888775432 2344444443 3578888888888888764 24
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHh
Q 001791 461 VLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1012)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1012)
.++.|-+.++| +.+-|+..+..+|...-
T Consensus 252 ~~~vL~e~~~D-~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 252 CVEVLKEYLGD-EERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHHHHHH
Confidence 56677777788 77777777777776553
No 221
>PF05536 Neurochondrin: Neurochondrin
Probab=94.55 E-value=11 Score=43.15 Aligned_cols=237 Identities=16% Similarity=0.173 Sum_probs=130.3
Q ss_pred HHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCC-HHHHHHHHHHHHHHHhhc-------chHhHHHHHHHHHHH
Q 001791 59 LKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS-LHTQSSLKSMLLQSIQLE-------SAKSISKKLCDTVSE 130 (1012)
Q Consensus 59 ~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~-~~~~~~i~~~ll~~l~~~-------~~~~vr~~~~~~l~~ 130 (1012)
...+.+|... +.+-|..|..++++.++..+.. ... ....+.|-..++..|-.. +....+..+..+++.
T Consensus 8 ~~c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~---~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 8 EKCLSLLKSA-DDTERFAGLLLVTKLLDADDED---SQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHhccC-CcHHHHHHHHHHHHcCCCchhh---HHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 5566666543 3555666666777777654100 000 001122222344433321 223445555556666
Q ss_pred HHhcccC--CCCcchHHHHHHHhhcCCCH-HHHHHHHHHHHHhhhhHhhhccc-cHHHHHHHHHHhhcCCCChHHHHHHH
Q 001791 131 LASNILP--ENGWPELLPFMFQCVSSDSV-KLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFLNCLTNSNNPDVKIAAL 206 (1012)
Q Consensus 131 i~~~~~~--~~~~~~ll~~l~~~~~~~~~-~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~vr~~a~ 206 (1012)
++...-- ....-.-+|.+.+.+.+.+. ....-++.+|..++.. ++.-.. .-...++.+.+.+.+ .+..+..|+
T Consensus 84 f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 84 FCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred HcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 6552100 12445668999999877665 7778899999988843 222111 011223333333333 356678899
Q ss_pred HHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHH------HHHhHHHHHHHHHHh
Q 001791 207 NAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRF------LRRQLVDVVGSMLQI 280 (1012)
Q Consensus 207 ~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~------~~~~~~~i~~~l~~~ 280 (1012)
+.+..++...... ........+..+++.+...........+...+..|..+....+.. -......+...+..+
T Consensus 161 ~lL~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~i 239 (543)
T PF05536_consen 161 NLLLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDI 239 (543)
T ss_pred HHHHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHH
Confidence 9999888765311 111122223345555555554445566778899999888766321 122345666666666
Q ss_pred hccCCcchHHHHHHHHHHHHHHHh
Q 001791 281 AEAESLEEGTRHLAIEFVITLAEA 304 (1012)
Q Consensus 281 ~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1012)
+.++ ..+.-|..++.+...+.+.
T Consensus 240 L~sr-~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 240 LQSR-LTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HhcC-CCHHHHHHHHHHHHHHHHH
Confidence 6554 4567788888888887775
No 222
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.51 E-value=5.3 Score=45.83 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=68.7
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc--cc
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP--EI 496 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~--~~ 496 (1012)
|-.+..|.+.++.++..|..-+..++-.- ..+ .... -.=++.++..+.+ ++..|+..||.+|.+++-.-.. +.
T Consensus 236 pe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~i-k~~vrqlggI~kLv~Ll~~-~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 236 PEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKI-KSRVRQLGGIPKLVALLDH-RNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred HHHHHHHhccChhhhHHHHHHHHHHHhhh-HHH-HHHHHHhccHHHHHHHhcC-CcHHHHHHHHHHHHhhhcccCCcccc
Confidence 33445556777888888877777665321 111 1111 1346778888888 8999999999999999865432 11
Q ss_pred c-cCcHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHH
Q 001791 497 L-TPYLDGIVSKLLVLLQN-GKQMVQEGALTALASVADS 533 (1012)
Q Consensus 497 l-~~~~~~il~~l~~~l~~-~~~~v~~~a~~~l~~l~~~ 533 (1012)
+ .++.+. ++.++.++.. .+.++++.+.-.+-+|.+.
T Consensus 313 lai~~~~G-v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 313 LAIKELNG-VPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred hhhhhcCC-hHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 1 133333 3444555543 5678888888777777655
No 223
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=19 Score=45.03 Aligned_cols=177 Identities=8% Similarity=0.098 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChh
Q 001791 356 SVGQECLDRLAIALGGNTIVPVASEQLPAY-LAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPR 433 (1012)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~ 433 (1012)
..+.-+.+.++....+....+.++..+... ..+.+|++|.+.+.-+..++-...- ......++|-..+...+.|....
T Consensus 1505 ~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~ 1584 (1710)
T KOG1851|consen 1505 NSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIE 1584 (1710)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHH
Confidence 345555555555444456666777777643 3457899999988777766543221 23456678888999999999899
Q ss_pred HHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCC-ChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHh
Q 001791 434 VRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLL 512 (1012)
Q Consensus 434 vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l 512 (1012)
||..|..+++-+...-.-.+ .+..-........... +.....+|..+|+.++-.++- .+..+++..+..+....
T Consensus 1585 vre~Aa~~Lsgl~~~s~~~~----~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy-~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1585 VREEAAKCLSGLLQGSKFQF----VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPY-VVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred HHHHHHHHHHHHHhcccccc----chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccc-cchhhhHHHHHHHHhhc
Confidence 99999999998876432221 1111122222222212 233456788899999888763 34456666666665554
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHhhh
Q 001791 513 QNGKQMVQEGALTALASVADSSQEHF 538 (1012)
Q Consensus 513 ~~~~~~v~~~a~~~l~~l~~~~~~~~ 538 (1012)
.++ ..++..+-.+++..-....+.+
T Consensus 1660 ~e~-~~i~~tvkktvseFrrth~D~W 1684 (1710)
T KOG1851|consen 1660 RES-AAIKQTVKKTVSEFRRTHADTW 1684 (1710)
T ss_pred CCc-hHHHHHHHHHHHHHHHHhhhhh
Confidence 443 5567666677766655544443
No 224
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=94.28 E-value=2 Score=42.58 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHccccchhhHHHHHHhHhhhhc-----CCCCH----HHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHH
Q 001791 858 DQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWG-----KDKTA----EERRIAICIFDDVAEQCREAALKYYETYLPFL 928 (1012)
Q Consensus 858 ~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~-----~~~~~----~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~ 928 (1012)
..+......+.+...-.+.||+.+++|.+++++- .++++ ..|..|..+++.+++..+.......|++...+
T Consensus 254 tTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTl 333 (450)
T COG5095 254 TTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTL 333 (450)
T ss_pred HHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHH
Confidence 3455566666665544557999999999999762 22222 26778889999999998888777788888888
Q ss_pred HhhccCC--ChhHHHHHHHHHHHHHhhc
Q 001791 929 LEACNDE--NQDVRQAAVYGLGVCAEFG 954 (1012)
Q Consensus 929 l~~l~~~--~~~vr~~a~~~lg~l~~~~ 954 (1012)
++++-|. -......|++++..+-+..
T Consensus 334 lKafLD~~k~~sT~YGalkgls~l~ke~ 361 (450)
T COG5095 334 LKAFLDREKTESTQYGALKGLSILSKEV 361 (450)
T ss_pred HHHHHhcccccchhhhhhhhhhhhchhh
Confidence 8876543 3456677888887775543
No 225
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=94.22 E-value=4.5 Score=44.82 Aligned_cols=240 Identities=13% Similarity=0.120 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHH-HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhc
Q 001791 391 WQKHHAALIALAQIAEGCAKVMVKNLEQVLS-MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAM 469 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l 469 (1012)
++.|.+|..+||.+....+. +.+..++. .+...|++++..=|..|+.++..++............+.+.+.|...|
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~---~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE---SSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 67899999999999887643 34445554 688899999999999999999998887654321111356677777777
Q ss_pred CCCCC-----------hHHHHHHHHHHHHHhhcCC--cccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 001791 470 DDFQN-----------PRVQAHAASAVLNFSENCT--PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 470 ~~~~~-----------~~v~~~a~~al~~l~~~~~--~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
.+ +. .++|..+-..+..+.+... .+. .|.++.+++.--. ..++..--+.|....+........
T Consensus 178 ~~-~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~k-lp~l~~~v~~~~~--~~p~~fsi~~A~~v~~~~~~~l~~ 253 (441)
T PF12054_consen 178 EN-PEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSK-LPSLPVVVQGEPE--AGPEAFSIEQAEKVVGEDFEKLKK 253 (441)
T ss_pred cC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhh-ccccccccccccc--cCCccCCHHHHHHHHHHHHHHHHH
Confidence 74 22 1344444445554444322 111 1222111110000 000000111122222222111111
Q ss_pred hhH------------hhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHH-hhhChhhhhhhHHHHHHHHHHHhcCCC
Q 001791 537 HFQ------------KYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG-MAVGKDKFRDDAKQVMEVLMSLQGSQM 603 (1012)
Q Consensus 537 ~~~------------~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~-~~~~~~~~~~~~~~i~~~l~~l~~~~~ 603 (1012)
.+. .--..+...+... + .......+|..+.-+-+.++ ..++ +++.|.++.+|+.+..
T Consensus 254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~-~--~~~~~~~~~V~Aa~A~A~v~l~~lP-~KLnPiIrpLMdSIK~------ 323 (441)
T PF12054_consen 254 SLSPSQKLSALQALEDRRQRLQAAIEEA-K--EVQTSRDVRVLAAAASALVALGGLP-KKLNPIIRPLMDSIKR------ 323 (441)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhccCC-CCccHHHHHHHHHhhc------
Confidence 110 0001111111111 0 01111222322222222232 2344 7799998888887764
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHHHhccCC
Q 001791 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKP 647 (1012)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~~~~~~ 647 (1012)
|.+..+......++..++..+-..-..--+.|+..|+..+..|+
T Consensus 324 Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~ 367 (441)
T PF12054_consen 324 EENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDT 367 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCc
Confidence 34445666666777777777764433345889999999987764
No 226
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.18 E-value=13 Score=42.81 Aligned_cols=363 Identities=15% Similarity=0.162 Sum_probs=176.6
Q ss_pred cchH-HHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHH--HHHHHHhhcCCCChHHHHHHHHHHHHHHHhhc
Q 001791 141 WPEL-LPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHL--HAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1012)
Q Consensus 141 ~~~l-l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l--~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~ 217 (1012)
|-+. +|..+.++.++++.++-.|-.-+..+|-...+. ...+.++ ++.+...|... +.+|+..|..+|.+++..-.
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~i-k~~vrqlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKI-KSRVRQLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHH-HHHHHHhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhcccC
Confidence 6443 677788888888877777777777777543321 1112222 34555566776 89999999999999986543
Q ss_pred CcchHhHH--HhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHH-hHHHHHHHHHHhh-------ccCCc-
Q 001791 218 SSADRDRF--QDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR-QLVDVVGSMLQIA-------EAESL- 286 (1012)
Q Consensus 218 ~~~~~~~~--~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~-~~~~i~~~l~~~~-------~~~~~- 286 (1012)
.....-.+ .+=+|.++..+.+ ..|.+++..+..+|..+.+. +.+.. .+.+-+..+...+ .+.+.
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~---t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~ 382 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRH---TQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAP 382 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHh---hcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcc
Confidence 21111111 1234555555543 34788999888888888765 22222 2222222222221 11111
Q ss_pred ----chHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHH
Q 001791 287 ----EEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECL 362 (1012)
Q Consensus 287 ----~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l 362 (1012)
+.++-..+..||-.+.+.....-..++.....+..++..+-..+....-| + .....+..++
T Consensus 383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d--------------~-K~VENcvCil 447 (717)
T KOG1048|consen 383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLD--------------S-KSVENCVCIL 447 (717)
T ss_pred cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhcccc--------------c-hhHHHHHHHH
Confidence 23344445556655544210011112334445555555444333321110 1 1112233344
Q ss_pred HHHHHHcCCCcchHHHHHHHHHhhCCCChh-HHHHHHHHHHHHHhhc---------HH-HHHH------hHHHHHHHHHh
Q 001791 363 DRLAIALGGNTIVPVASEQLPAYLAAPEWQ-KHHAALIALAQIAEGC---------AK-VMVK------NLEQVLSMVLN 425 (1012)
Q Consensus 363 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-~r~aal~~l~~l~~~~---------~~-~~~~------~l~~i~~~l~~ 425 (1012)
..++-.+. .++-+...+.+.+.-....-. .. ...-+++.-.... ++ ...+ .-+.++..-+.
T Consensus 448 RNLSYrl~-~Evp~~~~~~~~~~~~~~~~~~~~-~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~ 525 (717)
T KOG1048|consen 448 RNLSYRLE-AEVPPKYRQVLANIARLPGVGPPA-ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLL 525 (717)
T ss_pred hhcCchhh-hhcCHhhhhHhhcccccccCCCcc-cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHH
Confidence 44443222 111111111111100000000 00 0111111111110 00 0001 11344444333
Q ss_pred hC-CCCChhHHHHHHHHHHHhhhhhchhH--Hhh---hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc-ccc
Q 001791 426 SF-RDPHPRVRWAAINAIGQLSTDLGPDL--QNQ---FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILT 498 (1012)
Q Consensus 426 ~l-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~---~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~ 498 (1012)
++ ...++.+-+++.-+|..++-...... ... --+..+|.+++.+.. .+..|..+++.+|.++....... .+.
T Consensus 526 Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~-~~~~vv~s~a~~LrNls~d~rnk~lig 604 (717)
T KOG1048|consen 526 LLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN-DDSDVVRSAAGALRNLSRDIRNKELIG 604 (717)
T ss_pred HHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc-CCchHHHHHHHHHhhhccCchhhhhhh
Confidence 33 34577888888888887765432211 001 124567889999988 88999999999999998765432 222
Q ss_pred CcHHHHHHHHHHHhhcCC------hhHHHHHHHHHHHHH
Q 001791 499 PYLDGIVSKLLVLLQNGK------QMVQEGALTALASVA 531 (1012)
Q Consensus 499 ~~~~~il~~l~~~l~~~~------~~v~~~a~~~l~~l~ 531 (1012)
...++.|+.+|.... .++-..++..+..++
T Consensus 605 ---k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 605 ---KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred ---cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 345677777776543 334444555555554
No 227
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=94.06 E-value=1.1 Score=41.50 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=75.8
Q ss_pred hhhhhhhHHHHHhhcCCC-----------------CChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCCh
Q 001791 455 NQFHPQVLPALAGAMDDF-----------------QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ 517 (1012)
Q Consensus 455 ~~~~~~il~~l~~~l~~~-----------------~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~ 517 (1012)
.++++.++|.++..+.-. ..-.+|..|..++..+++.+... + .+..+++.+..-+.+ +.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~-~--~~~~~~~~v~~GL~D-~~ 79 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSR-I--DISEFLDRVEAGLKD-EH 79 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSS-S---HHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHh-C--CHHHHHHHHHhhcCC-cH
Confidence 356788889888655420 23578999999999999987633 2 356678888888888 88
Q ss_pred hHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001791 518 MVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1012)
Q Consensus 518 ~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~ 555 (1012)
.++.-+...+..++...+..+.+.++.+.+.+...+..
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~ 117 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSK 117 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988888999999999988864
No 228
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=94.03 E-value=0.45 Score=40.13 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=57.4
Q ss_pred hhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHhhcCC
Q 001791 915 EAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSV-VKPLVGEALSRLNVVIRHP 976 (1012)
Q Consensus 915 ~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~-~~~~~~~il~~L~~~l~~~ 976 (1012)
..+.|+++.++..+..++.+-.++||.-|+..|..+.++.|+. +..++..+++.+..++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4567899999999999999999999999999999999999988 8889999999999999866
No 229
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=14 Score=42.35 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=115.1
Q ss_pred hhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhC-C-CChhHHHHHHHHHHHHHhhcH-----------HHHH----HhH-
Q 001791 355 YSVGQECLDRLAIALGGNTIVPVASEQLPAYLA-A-PEWQKHHAALIALAQIAEGCA-----------KVMV----KNL- 416 (1012)
Q Consensus 355 ~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~-~~~~~r~aal~~l~~l~~~~~-----------~~~~----~~l- 416 (1012)
|+.|...|..++..+. ..+...-++.+.+.++ | .|...-..++..+.-+...-. +.+. ..+
T Consensus 40 RR~A~rgLKa~srkYR-~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fi 118 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYR-EEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFI 118 (970)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHH
Confidence 6677778877776553 2222223333333333 2 455555566665555443321 1111 111
Q ss_pred --HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh--hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC
Q 001791 417 --EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN--QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1012)
Q Consensus 417 --~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1012)
+..+..++..+...+-.||..+...++.+...-+..... -..|.-+..++..|.| ....+|..++..|..+.+..
T Consensus 119 k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 119 KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDN 197 (970)
T ss_pred cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccC
Confidence 346677888888889999999999999999887766522 2456777888889999 78889999999999999877
Q ss_pred CcccccCcHHHHHHHHHHHhhcCC----hhHHHHHHHHHHHHHHH
Q 001791 493 TPEILTPYLDGIVSKLLVLLQNGK----QMVQEGALTALASVADS 533 (1012)
Q Consensus 493 ~~~~l~~~~~~il~~l~~~l~~~~----~~v~~~a~~~l~~l~~~ 533 (1012)
+.-.=.-.++.+...|++++.... .-|-+.++..+.++.+.
T Consensus 198 ~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 198 SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN 242 (970)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence 631111245788888888887653 34666777777777654
No 230
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.01 E-value=2.2 Score=46.67 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=78.4
Q ss_pred HHHHHHhcccCCCCcccCCC--HHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC--CCCcchHHHHHHHhhc
Q 001791 78 AVLLRKLLTRDDSFLWPRLS--LHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP--ENGWPELLPFMFQCVS 153 (1012)
Q Consensus 78 ~~~L~~~i~~~~~~~w~~l~--~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~--~~~~~~ll~~l~~~~~ 153 (1012)
..+|++++... -+..+ .+..+.+...++.++.+ ++..||...+++++.+.....+ ...++.++..|...+-
T Consensus 68 l~fl~~f~~Y~----~~~dpeg~~~V~~~~~h~lRg~es-kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~ 142 (885)
T COG5218 68 LSFLKRFFEYD----MPDDPEGEELVAGTFYHLLRGTES-KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF 142 (885)
T ss_pred HHHHHHHHHhc----CCCChhhhHHHHHHHHHHHhcccC-cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 34566665543 12222 23445555566666765 8999999999999998765433 2244556666666667
Q ss_pred CCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001791 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1012)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1012)
+-.+.+|.-|+.+|..+-+..++. -+.+..++...+++.++.+||..|+--+
T Consensus 143 DRE~~VR~eAv~~L~~~Qe~~~ne----en~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 143 DREKAVRREAVKVLCYYQEMELNE----ENRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred cchHHHHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 778899999999998877654332 2333444444455444899998886433
No 231
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.72 E-value=0.67 Score=50.28 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhcc----------CCChhHHHHHHHHHHHHHhhcCCchHHHHHH
Q 001791 895 TAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN----------DENQDVRQAAVYGLGVCAEFGGSVVKPLVGE 964 (1012)
Q Consensus 895 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~----------~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~ 964 (1012)
+-..-.+.+.++..|+++-.-.+.||+.+++|+++.|+- |..+.+|..|+..++.+++..++.+....+.
T Consensus 260 nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~R 339 (576)
T KOG2549|consen 260 NLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPR 339 (576)
T ss_pred cHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 334445677777777777666778999999999998862 5668899999999999999999888888889
Q ss_pred HHHHHHHhhcCCC
Q 001791 965 ALSRLNVVIRHPN 977 (1012)
Q Consensus 965 il~~L~~~l~~~~ 977 (1012)
++..+.+.+.++.
T Consensus 340 it~tl~k~l~D~~ 352 (576)
T KOG2549|consen 340 ITRTLSKALLDNK 352 (576)
T ss_pred HHHHHHHHhcCCC
Confidence 9999999998875
No 232
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.71 E-value=8.5 Score=38.65 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=110.6
Q ss_pred CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHc---cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHH
Q 001791 33 STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ---RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLL 109 (1012)
Q Consensus 33 s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~---~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll 109 (1012)
.++++.....-..|.++...+- ...+..++.+. +......+..+..++-.+++.+ + -....++..+.
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--------~-r~f~~L~~~L~ 81 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN--------D-RHFPFLQPLLL 81 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC--------c-hHHHHHHHHHH
Confidence 3466666677777776665331 12233334333 3444555667777777775543 1 11234444444
Q ss_pred HHHh--------hcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhh-cCCCHHHHHHHHHHHHHhhhhHhhhccc
Q 001791 110 QSIQ--------LESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCV-SSDSVKLQESAFLIFAQLSQYIGDTLTP 180 (1012)
Q Consensus 110 ~~l~--------~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~-~~~~~~~r~~al~~l~~l~~~~~~~~~~ 180 (1012)
.... .+.........+..+..++.. .| +.|+++++.+...+ .+.++..+..++..+..+|+.---++..
T Consensus 82 ~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s 159 (234)
T PF12530_consen 82 LLILRIPSSFSSKDEFWECLISIAASIRDICCS-RP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYS 159 (234)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-Ch-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHH
Confidence 3111 123334455556777888775 45 49999999999999 7778888999999999999653333333
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC-cchHhHHHhhHHHHHHHHHHHHhcCChH
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS-SADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 246 (1012)
.+ ..+..-+..+..+.+-.. +..++...+. ..+.+.+..+...++..+++.....+.+
T Consensus 160 ~w----~vl~~~l~~~~rp~v~~~----l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~ 218 (234)
T PF12530_consen 160 AW----KVLQKKLSLDYRPLVLKS----LCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN 218 (234)
T ss_pred HH----HHHHHhcCCccchHHHHH----HHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence 33 333333333334444433 3333333221 1233445566668888888877665543
No 233
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=93.59 E-value=0.93 Score=48.33 Aligned_cols=124 Identities=15% Similarity=0.196 Sum_probs=79.7
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-----C-ChHHHHHHHHHHHHHhhcCCc
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-----Q-NPRVQAHAASAVLNFSENCTP 494 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-----~-~~~v~~~a~~al~~l~~~~~~ 494 (1012)
..+...+.+.+...|..|+..|.. +.-+.+++|.+...+.+. . +..+-...+..+..|+.+-.
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~t----------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~- 249 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRT----------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPN- 249 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhcc----------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCC-
Confidence 333334445677788887776544 234555666665555430 1 23344455566666666554
Q ss_pred ccccCcHHHHHHHHHHHhh----------cCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001791 495 EILTPYLDGIVSKLLVLLQ----------NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1012)
Q Consensus 495 ~~l~~~~~~il~~l~~~l~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~ 555 (1012)
=.+.+|+-.+++.++.++- +.+..+|+.|...++.++..++.......+.++..+.+.+.+
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLD 320 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 3478999999999998772 234689999999999999888865444556666666666654
No 234
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.31 E-value=29 Score=43.56 Aligned_cols=160 Identities=18% Similarity=0.195 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHH
Q 001791 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWA 437 (1012)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~ 437 (1012)
..+++..|-...+ ..+-.++|.+...+.+.+-.+|.-|.-.+|.+.......+....+.++..++..+.|.+..||..
T Consensus 242 ~he~i~~L~~~~p--~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~ 319 (1266)
T KOG1525|consen 242 YHELILELWRIAP--QLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRME 319 (1266)
T ss_pred HHHHHHHHHHhhH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhh
Confidence 3455555555443 56677899999999999999999999999999877665555667889999999999999999999
Q ss_pred HHHHHHHhhhhhch----------------------------------hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHH
Q 001791 438 AINAIGQLSTDLGP----------------------------------DLQNQFHPQVLPALAGAMDDFQNPRVQAHAAS 483 (1012)
Q Consensus 438 a~~~l~~l~~~~~~----------------------------------~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~ 483 (1012)
+..+...+.-..+. .+.-.+.+.++..+.+.+.| ..+.||..|+.
T Consensus 320 ~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rD-Kk~~VR~~Am~ 398 (1266)
T KOG1525|consen 320 CVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRD-KKIKVRKQAMN 398 (1266)
T ss_pred HHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhh-hhHHHHHHHHH
Confidence 98887654432211 01012334477778888889 89999999999
Q ss_pred HHHHHhhc--C----CcccccCcHHHHHHHHHHHhhcCChhHH
Q 001791 484 AVLNFSEN--C----TPEILTPYLDGIVSKLLVLLQNGKQMVQ 520 (1012)
Q Consensus 484 al~~l~~~--~----~~~~l~~~~~~il~~l~~~l~~~~~~v~ 520 (1012)
.|..+-.+ + +...+.+-+..|-..++.++...+...|
T Consensus 399 ~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 399 GLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 99998874 1 2223345555566677776665544444
No 235
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=93.25 E-value=1.7 Score=41.84 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=74.8
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhh
Q 001791 507 KLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRD 586 (1012)
Q Consensus 507 ~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~ 586 (1012)
.+.+.++-.....-..++.+++.+....+....+++..++..+.+.-.+ +....|..+=.|+|...+++|++.+..
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~----~~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRES----EDFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 3344444444567788899999999999987777777777777766432 336788888999999999999876553
Q ss_pred hHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHH
Q 001791 587 DAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL 640 (1012)
Q Consensus 587 ~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll 640 (1012)
.+ ++- +.+ -+..++-|..++-.+..-+ .+..+.-|...++|..-
T Consensus 80 ~l----PLn--l~~--~~~~~~~raWLLPlLr~~i--~~~~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 80 IL----PLN--LDN--ADDSQPGRAWLLPLLRDHI--RNASLSFFVEEFLPLAR 123 (198)
T ss_pred HC----CCC--ccC--CCcCCcccchhHHHHHHhc--cCCChHHHHHHHHHHHH
Confidence 22 211 110 0112233445555555432 34566666666666543
No 236
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=0.24 Score=46.20 Aligned_cols=91 Identities=15% Similarity=0.037 Sum_probs=72.8
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcC---Cch
Q 001791 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG---SVV 958 (1012)
Q Consensus 882 ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~---~~~ 958 (1012)
++|.+.+.+. ..+-..|..|-.-+.+++...|+.+.|.+|+++..+-.+|...|.+|...++.+|..++...+ .+.
T Consensus 115 yLp~F~dGL~-e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLA-ETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhh-hcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 4444444442 222335677778888999999999999999999999999999999999999999999988765 578
Q ss_pred HHHHHHHHHHHHHhh
Q 001791 959 KPLVGEALSRLNVVI 973 (1012)
Q Consensus 959 ~~~~~~il~~L~~~l 973 (1012)
.|++.++|+.+.-.=
T Consensus 194 VPfYRQlLp~~n~~k 208 (262)
T KOG3961|consen 194 VPFYRQLLPVLNTFK 208 (262)
T ss_pred hhHHHHhhhhhhhhc
Confidence 899999999886553
No 237
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=92.92 E-value=8.1 Score=45.31 Aligned_cols=135 Identities=14% Similarity=0.126 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCC----CChhHHHHHHHHHHHHHhh-cHHH-------HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHH
Q 001791 377 VASEQLPAYLAA----PEWQKHHAALIALAQIAEG-CAKV-------MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQ 444 (1012)
Q Consensus 377 ~~~~~l~~~l~~----~~~~~r~aal~~l~~l~~~-~~~~-------~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~ 444 (1012)
.++..+.+++.+ ++...|.+|+.+++.++.. |... ...+.+.+...+-...+..+...+..++++||+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 344445555554 4678999999999999873 3211 122333344444444455666678889999998
Q ss_pred hhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhc--CChhHHHH
Q 001791 445 LSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQN--GKQMVQEG 522 (1012)
Q Consensus 445 l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~--~~~~v~~~ 522 (1012)
+.... .+..+.+.+. .-.. ....+|..|+++|..+....+. .+.+.+++++.+ .+.++|..
T Consensus 473 ~g~~~-------~i~~l~~~l~-~~~~-~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 473 AGHPS-------SIKVLEPYLE-GAEP-LSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred cCChh-------HHHHHHHhcC-CCCC-CCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCChHHHHH
Confidence 76421 1222233322 1122 4578999999999988765552 223444444444 34678877
Q ss_pred HHHHHH
Q 001791 523 ALTALA 528 (1012)
Q Consensus 523 a~~~l~ 528 (1012)
|+..+-
T Consensus 536 A~~~lm 541 (574)
T smart00638 536 AVLVLM 541 (574)
T ss_pred HHHHHH
Confidence 776553
No 238
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=92.74 E-value=6.6 Score=43.55 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH-HHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHH
Q 001791 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP-ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1012)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~-~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~ 510 (1012)
.+.|.+|..+||.++..++. .....++. .++.+|++ +...-|..|+..+...+.........+..+.+.+.|..
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~----~~~~~~~~~~L~~~L~S-~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE----SSLQEIFQPLLLPYLNS-PSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc----chHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 45788999999999988753 33455555 57888888 66667788888999988877543222223455566665
Q ss_pred Hhh
Q 001791 511 LLQ 513 (1012)
Q Consensus 511 ~l~ 513 (1012)
.|.
T Consensus 176 ~L~ 178 (441)
T PF12054_consen 176 ILE 178 (441)
T ss_pred HHc
Confidence 555
No 239
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.57 E-value=7.1 Score=42.69 Aligned_cols=155 Identities=10% Similarity=0.039 Sum_probs=98.3
Q ss_pred HHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHh-hcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHH
Q 001791 108 LLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQC-VSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLH 186 (1012)
Q Consensus 108 ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~-~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~ 186 (1012)
++.-|..+.++.+|...+..++.-..- ..-...+..++.. .++.+..+|.+|.-+++.+|-...+. +...+
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~G----Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~----lv~tv 591 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVG----TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDL----LVGTV 591 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhc----CCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcch----hhHHH
Confidence 444444446777887666555543221 1223345555555 56778899999999999887653332 23333
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHH
Q 001791 187 AVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFL 266 (1012)
Q Consensus 187 ~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~ 266 (1012)
+ .|.+..++.||....-+|+-.+..-. .+ ..+..+..+..+++.-+|+.|+-.+.-+...+.+.+
T Consensus 592 e----lLs~shN~hVR~g~AvaLGiacag~G----~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 592 E----LLSESHNFHVRAGVAVALGIACAGTG----DK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred H----HhhhccchhhhhhhHHHhhhhhcCCc----cH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3 33444489999888888876655421 11 223334444457777899999999988887777778
Q ss_pred HHhHHHHHHHHHHhhccCC
Q 001791 267 RRQLVDVVGSMLQIAEAES 285 (1012)
Q Consensus 267 ~~~~~~i~~~l~~~~~~~~ 285 (1012)
.|.+..|...+.+...+++
T Consensus 657 np~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhHHHHHHHHHHHHhhhh
Confidence 8888888887777665543
No 240
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=92.50 E-value=19 Score=39.26 Aligned_cols=300 Identities=14% Similarity=0.177 Sum_probs=154.9
Q ss_pred HHHhHHHHHHHHHhhCC------CC-ChhHHHHHHHHHHHhhhhh--chhHHhhhhhhhHHHHHhhcCCCC-ChHHHHHH
Q 001791 412 MVKNLEQVLSMVLNSFR------DP-HPRVRWAAINAIGQLSTDL--GPDLQNQFHPQVLPALAGAMDDFQ-NPRVQAHA 481 (1012)
Q Consensus 412 ~~~~l~~i~~~l~~~l~------d~-~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~il~~l~~~l~~~~-~~~v~~~a 481 (1012)
+..+++.++..+..-+. ++ +.++-..|+++++.+.... ...+..+....++...+..+.+.. ++.+...+
T Consensus 33 l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~ 112 (372)
T PF12231_consen 33 LQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHY 112 (372)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 33444444544444332 22 6678889999998876432 111112233346777777776522 33444455
Q ss_pred HHHHHHHhhcCCcccccCcHHH-HHHHHHHHhh-cCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhcccc
Q 001791 482 ASAVLNFSENCTPEILTPYLDG-IVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDK 559 (1012)
Q Consensus 482 ~~al~~l~~~~~~~~l~~~~~~-il~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~ 559 (1012)
.++|.. .++++..+...... ++..+...-+ -++..+-...+.++..+....++.+....+.-+|.+...+-+
T Consensus 113 l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~---- 186 (372)
T PF12231_consen 113 LWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLS---- 186 (372)
T ss_pred HHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 555544 35554444333333 3333333322 345667778888999998888877776666666666655443
Q ss_pred ccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHH
Q 001791 560 SNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1012)
Q Consensus 560 ~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1012)
....+|.+|+.+...+...+|++.. +...+....+.... .. .|...+.+.|
T Consensus 187 ~~k~ir~~a~~l~~~~~~~l~~~~~------~s~~~~~~~~~~~~---------------------~~--~~~~~~~~~L 237 (372)
T PF12231_consen 187 SAKDIRTKAISLLLEAKKCLGPNKE------LSKSVLEDLQRSLE---------------------NG--KLIQLYCERL 237 (372)
T ss_pred cchHHHHHHHHHHHHHHHHhChhHH------HHHHHHHHhccccc---------------------cc--cHHHHHHHHH
Confidence 2234677777766666666663321 11111111111111 11 2222333333
Q ss_pred HHHhccCCCccccCCCCCccccCCCCcccchhhcCCceeeecchhHHHHHHHHHHHHHHHHHhhh---cccccHHHHHHH
Q 001791 640 LQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKE---GFFPWIDQVAPT 716 (1012)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~---~~~p~~~~~~~~ 716 (1012)
.+.+... ++ ...|...++.++.-++. .--+|+.+.+..
T Consensus 238 ~~mi~~~------------------~~---------------------~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 238 KEMIKSK------------------DE---------------------YKLAMQIWSVVILLLGSSRLDSWEHLNEWLKV 278 (372)
T ss_pred HHHHhCc------------------CC---------------------cchHHHHHHHHHHHhCCchhhccHhHhHHHHH
Confidence 3333110 00 01234455555554442 234556677777
Q ss_pred hccccCccCCHHHHHHHHHhHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcH----HHHHHHHHHH
Q 001791 717 LVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT----EICASMLDSL 792 (1012)
Q Consensus 717 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l 792 (1012)
...+++.. ++.+|..|..+=..++... .......+..+..+..++...+..+... +++..++.++
T Consensus 279 ~e~cFn~~-d~~~k~~A~~aW~~liy~~----------~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l 347 (372)
T PF12231_consen 279 PEKCFNSS-DPQVKIQAFKAWRRLIYAS----------NPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSL 347 (372)
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHh----------cCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHH
Confidence 77777754 8889999999887777743 1122223445555555665555544333 5555556665
Q ss_pred HHHH
Q 001791 793 NECI 796 (1012)
Q Consensus 793 ~~~~ 796 (1012)
...+
T Consensus 348 ~~ll 351 (372)
T PF12231_consen 348 CNLL 351 (372)
T ss_pred hchH
Confidence 5544
No 241
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.35 E-value=3.6 Score=48.80 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhCC----CChhHHHHHHHHHHHHHhhcHHH--------------HHHhHHHH
Q 001791 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAA----PEWQKHHAALIALAQIAEGCAKV--------------MVKNLEQV 419 (1012)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~----~~~~~r~aal~~l~~l~~~~~~~--------------~~~~l~~i 419 (1012)
+...+..+..... .--..++..+.+++.+ .+...|.+|+.+++.++...... ...+.+.+
T Consensus 414 a~~~l~~l~~~~~--~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l 491 (618)
T PF01347_consen 414 AAQLLASLPFHVR--RPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYL 491 (618)
T ss_dssp HHHHHHHHHHT-------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHH
T ss_pred HHHHHHHHHhhcC--CCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHH
Confidence 3444544444331 1123344444445543 46789999999999998753221 11233444
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC--CChHHHHHHHHHHHHHhhcCCcccc
Q 001791 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF--QNPRVQAHAASAVLNFSENCTPEIL 497 (1012)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~~v~~~a~~al~~l~~~~~~~~l 497 (1012)
...+.......+...+..++.+||++.. +..++.+...+.+. ....+|..|+++|..+...++
T Consensus 492 ~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~---- 556 (618)
T PF01347_consen 492 EQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP---- 556 (618)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----
T ss_pred HHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----
Confidence 4444445556677888899999998753 24566666666551 257899999999987744332
Q ss_pred cCcHHHHHHHHHHHhhcC--ChhHHHHHHHHH
Q 001791 498 TPYLDGIVSKLLVLLQNG--KQMVQEGALTAL 527 (1012)
Q Consensus 498 ~~~~~~il~~l~~~l~~~--~~~v~~~a~~~l 527 (1012)
..+.+.++.++.+. +.++|-.|+..+
T Consensus 557 ----~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 557 ----EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp ----HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 34555666665554 467888777654
No 242
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=92.28 E-value=4.6 Score=41.93 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=114.7
Q ss_pred CCCChhHHHHHHHHHHHHHh--hcHHHHHHhHHHHHHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001791 387 AAPEWQKHHAALIALAQIAE--GCAKVMVKNLEQVLSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1012)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1012)
...+|..--+++.-+..... .......++-..+...+.++|+-. -.-|...|+.+...+.+.+++......+.-..+
T Consensus 21 ~~~EWAD~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~ 100 (307)
T PF04118_consen 21 SSSEWADYISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSP 100 (307)
T ss_pred hhhhHHHHHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHH
Confidence 35678777777666666555 111122344445667788888654 456889999999999999988766777778888
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhh
Q 001791 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH 537 (1012)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~ 537 (1012)
.++..+.. ....||..-...+....-..+. .+.|.++.++..++..+++.+.+..+.++..+..+...++..
T Consensus 101 GLfpl~~~-asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 101 GLFPLFSY-ASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 88888877 6677888888888888877776 688999999999999999888899999999999998888755
No 243
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.19 E-value=5.4 Score=39.32 Aligned_cols=169 Identities=19% Similarity=0.224 Sum_probs=88.3
Q ss_pred HHHHHHHhhC--CCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh
Q 001791 378 ASEQLPAYLA--APEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN 455 (1012)
Q Consensus 378 ~~~~l~~~l~--~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 455 (1012)
.+|.+...+. +..+.+|+.|..+||.+.. +.+++.+-+..+|+...|+..+..++.++- |..... .
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle-~~~~~~-~ 135 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLE-WKDIID-K 135 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHH-Hhhccc-c
Confidence 4444555554 4678999999999998762 234555566668999999999887777753 221100 0
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCc-----H-----HHHHHHHHHHhhcCChhHHHHHHH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY-----L-----DGIVSKLLVLLQNGKQMVQEGALT 525 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~-----~-----~~il~~l~~~l~~~~~~v~~~a~~ 525 (1012)
. .+..| +.. .| +.+..-.....-+...+-.-....+..| + +.-+..+...+...+...|..+..
T Consensus 136 -~-~~~~p--~~S-vd-Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 136 -I-ANSSP--YIS-VD-PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred -c-cccCc--ccc-CC-CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHH
Confidence 0 00000 001 22 2222111111111111111110111111 1 223445555555556667777777
Q ss_pred HHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 001791 526 ALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1012)
Q Consensus 526 ~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1012)
++|.+-.. .-+|.|.+.+.. ..+...+|..|.+++|.++
T Consensus 210 VfGQl~s~----------~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 210 VFGQLQSP----------AAIPSLIKVLLD--ETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHhhccch----------hhhHHHHHHHHh--hhcchHHHHHHHHHHHhhc
Confidence 77666432 224556666653 3467789999999998875
No 244
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.16 E-value=13 Score=44.03 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=82.8
Q ss_pred HHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccC--C-------CCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHH
Q 001791 57 LTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRD--D-------SFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKL 124 (1012)
Q Consensus 57 ~~~~l~~il~~---~~~~~vr~~a~~~L~~~i~~~--~-------~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~ 124 (1012)
.+..+..++.. ..++.+|..|.+.+..++.+. . ......+.+.....+...+-++... .+..-+..+
T Consensus 432 ~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 510 (618)
T PF01347_consen 432 LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSR-GDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHT-T-HHHHHHH
T ss_pred HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhc-cCHHHHHHH
Confidence 44555555543 356778888888888877653 1 0113344555555555555544443 556667777
Q ss_pred HHHHHHHHhcccCCCCcchHHHHHHHhhcCC---CHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHH
Q 001791 125 CDTVSELASNILPENGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDV 201 (1012)
Q Consensus 125 ~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~---~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v 201 (1012)
..+|+.+. -+..++.+...+.+. ...+|..|+.+|..+....++. ..+.+++++.+. . .+.++
T Consensus 511 LkaLgN~g--------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---v~~~l~~I~~n~--~-e~~Ev 576 (618)
T PF01347_consen 511 LKALGNLG--------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---VREILLPIFMNT--T-EDPEV 576 (618)
T ss_dssp HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---HHHHHHHHHH-T--T-S-HHH
T ss_pred HHHhhccC--------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---HHHHHHHHhcCC--C-CChhH
Confidence 77888663 245677777777665 5688999999999887765554 244555555532 2 36789
Q ss_pred HHHHHHHHHH
Q 001791 202 KIAALNAVIN 211 (1012)
Q Consensus 202 r~~a~~~l~~ 211 (1012)
|.+|+..|..
T Consensus 577 RiaA~~~lm~ 586 (618)
T PF01347_consen 577 RIAAYLILMR 586 (618)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999766643
No 245
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=91.88 E-value=42 Score=41.91 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=56.3
Q ss_pred HhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHH--HHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHh
Q 001791 922 ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVG--EALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1012)
Q Consensus 922 ~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~--~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~ 999 (1012)
..++..++..|++....|-.|+.-+|+.|...++. .++++- .-++.|.++|-.+ .....+.+++++=.++.
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~-DQq~LwD~gAv~mLrnLIhSK------hkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPE-DQQMLWDDGAVPMLRNLIHSK------HKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHH-HHHHHHhcccHHHHHHHHhhh------hhhhhhhHHHHHHHHhc
Confidence 45778888999999999999999999999888864 344432 2366677777543 46777888888888887
Q ss_pred HccC
Q 001791 1000 FHRD 1003 (1012)
Q Consensus 1000 ~~p~ 1003 (1012)
+.|.
T Consensus 602 ~RPA 605 (2195)
T KOG2122|consen 602 FRPA 605 (2195)
T ss_pred CCch
Confidence 7654
No 246
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.56 E-value=5.5 Score=38.30 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc---CchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccC
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ---DPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~---~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~ 88 (1012)
=+.++++.+.+++..+|..|.+.+....++ +|..+++.++.+. +++++.+|+.|..+++.+..++
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALE-TSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhh-CCCChHHHHHHHHHHHHHHHHh
Confidence 577889999999999999999999887766 8988999999875 5689999999999999987775
No 247
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.52 E-value=0.72 Score=43.19 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=74.5
Q ss_pred hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH---h
Q 001791 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS---S 534 (1012)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~---~ 534 (1012)
+..++|.+...|.+ .+-.-+--|-..+..++...+ +.+.|.++.++..|...+...+.++...++.++..+... +
T Consensus 112 y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 112 YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccc
Confidence 45677777777776 444456777788888888777 456799999999999999999999999999999888754 4
Q ss_pred HhhhHhhHhhhhHHHHHH
Q 001791 535 QEHFQKYYDAVMPFLKAI 552 (1012)
Q Consensus 535 ~~~~~~~~~~il~~l~~~ 552 (1012)
|..+.||+.+++|.+...
T Consensus 190 G~aLVPfYRQlLp~~n~~ 207 (262)
T KOG3961|consen 190 GAALVPFYRQLLPVLNTF 207 (262)
T ss_pred chhhhhHHHHhhhhhhhh
Confidence 578899999999977644
No 248
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=91.48 E-value=4.2 Score=36.88 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=69.4
Q ss_pred CcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhccccccchhhHHHHHHHHHHH
Q 001791 499 PYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVG 576 (1012)
Q Consensus 499 ~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~ 576 (1012)
......+..|.+-+.+.++.+...|+..+..+...+|..|...+ ..++..|..++..........+|.++++.+...+
T Consensus 38 ~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 38 DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 34467788888889999999999999999999999998876544 4577777777765433333338999999998888
Q ss_pred hhhChhhhhhhHHHHHHH
Q 001791 577 MAVGKDKFRDDAKQVMEV 594 (1012)
Q Consensus 577 ~~~~~~~~~~~~~~i~~~ 594 (1012)
..++...-.+++..++..
T Consensus 118 ~~f~~~~~~~~i~~~y~~ 135 (140)
T PF00790_consen 118 EAFKSDPELSLIQDTYKR 135 (140)
T ss_dssp HHTTTSTTGHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHH
Confidence 777544334444444443
No 249
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=49 Score=41.64 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=157.1
Q ss_pred cchHhHHHHHHHHHHHHHhcccCCCCc-----chHHHHHHHhhc---CC-CH--HHHHHHHHHHHHhh--hhH-hhhccc
Q 001791 115 ESAKSISKKLCDTVSELASNILPENGW-----PELLPFMFQCVS---SD-SV--KLQESAFLIFAQLS--QYI-GDTLTP 180 (1012)
Q Consensus 115 ~~~~~vr~~~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~~~---~~-~~--~~r~~al~~l~~l~--~~~-~~~~~~ 180 (1012)
.++..||-.++-|++.|.+...|..-+ .+++..++..+. +. ++ ..+-.-+..+..+. -.+ .++-..
T Consensus 61 h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e 140 (1266)
T KOG1525|consen 61 HKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQE 140 (1266)
T ss_pred CCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHH
Confidence 389999999999999999988776433 334444443332 21 22 11212222222222 111 111223
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
.+..++.++...+.++ .+..-..-+..+..++... ...-..++..++.-+-.+..+....|..+=..++.
T Consensus 141 ~~~~~f~~f~d~~~~~-~~~~v~~~~~i~~~li~e~---------d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~ 210 (1266)
T KOG1525|consen 141 LVHELFRTFFDLARKG-HPKKVFNMLDIAIMLITEE---------DTVQSELLDVLLENLVKPGRDTIKEADKLASDLIE 210 (1266)
T ss_pred HHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHhh---------ccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHH
Confidence 5677777777777665 3332223333444443322 11111345555544444455666666666666766
Q ss_pred cchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCcccc
Q 001791 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWH 340 (1012)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~ 340 (1012)
..+..+.+.+...+...+..- ......++....+.+..+.. ..++.+..++|.+...+....
T Consensus 211 ~~a~~~~~~i~~f~~~~~~~~--~s~~~~~~~~~he~i~~L~~----------~~p~ll~~vip~l~~eL~se~------ 272 (1266)
T KOG1525|consen 211 RCADNLEDTIANFLNSCLTEY--KSRQSSLKIKYHELILELWR----------IAPQLLLAVIPQLEFELLSEQ------ 272 (1266)
T ss_pred HhhhhhchhHHHHHHHHHhhc--cccccchhhHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHhcch------
Confidence 666666665555444332211 11112233444455555444 234466778888766655321
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHcCC--CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHH-------
Q 001791 341 SAETEDEDAGESSNYSVGQECLDRLAIALGG--NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKV------- 411 (1012)
Q Consensus 341 ~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~------- 411 (1012)
...+.-|..+++.+....+. ....+.++..+...+.|....+|.+++.....+.-+.+..
T Consensus 273 -----------~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~ 341 (1266)
T KOG1525|consen 273 -----------EEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTIL 341 (1266)
T ss_pred -----------HHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHH
Confidence 11344455555544432210 0224455666666677777888888777665543222110
Q ss_pred ----------------------------HHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001791 412 ----------------------------MVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1012)
Q Consensus 412 ----------------------------~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1012)
-..+.+.++..+..++.|..+.||..|+..+..+-+.
T Consensus 342 ~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 342 LALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 0022344777888899999999999999999888774
No 250
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.23 E-value=9.6 Score=37.13 Aligned_cols=210 Identities=15% Similarity=0.135 Sum_probs=116.0
Q ss_pred CcccchhhhHHHHHH----HhCCChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCch---------HHHHHHHHHHcc
Q 001791 1 MAAESTHLQQSQLAV----ILGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPD---------SLTLKLAHLLQR 67 (1012)
Q Consensus 1 ~~~~~~~~~~~~~~~----~~~~~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~---------~~~~~l~~il~~ 67 (1012)
||..|.|+...+... --+-+.+.+.+.+..+.+| +.|..|-.+|-+-.++.|+ +....|++-..+
T Consensus 1 M~~~p~p~~s~~~~~~~p~~~~~~~dk~~~~i~~l~~~--p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEiva 78 (293)
T KOG3036|consen 1 MANLPSPAMSKQQQTPSPGSNASNNDKAYQLILSLVSP--PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVA 78 (293)
T ss_pred CCCCCCCccchhccCCCCCcccccccchhhHHHHhhCC--chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHh
Confidence 777776665544432 0112345677777777754 7888888888765553332 112333332211
Q ss_pred ----------CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccC
Q 001791 68 ----------SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILP 137 (1012)
Q Consensus 68 ----------~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~ 137 (1012)
+....-|-.-+..|-+.+..+....-.-+....-.++-..+--...+-+...+|-.+.-+|+.+++.+-.
T Consensus 79 iYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~ 158 (293)
T KOG3036|consen 79 IYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQ 158 (293)
T ss_pred cccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcH
Confidence 2334557666776767666551100000000000111111111222235667888888888888885422
Q ss_pred C----CCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhH-h--------hhccccHHHHHH-HHHHhhcCCCChHHHH
Q 001791 138 E----NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-G--------DTLTPHLKHLHA-VFLNCLTNSNNPDVKI 203 (1012)
Q Consensus 138 ~----~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~-~--------~~~~~~~~~l~~-~l~~~l~~~~~~~vr~ 203 (1012)
. =.|.+++|.++..+..++...+..|..+++.+.-.. + +.|. .+..++. ++.+..+.+ +...-+
T Consensus 159 eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~-av~~~L~kmv~~l~~~p-s~RllK 236 (293)
T KOG3036|consen 159 EVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS-AVALVLGKMVFQLVSMP-SPRLLK 236 (293)
T ss_pred HHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH-HHHHHHHHHHHHHhcCC-CHHHHH
Confidence 1 156889999999999998888888888888775431 1 1121 2333333 344444444 677777
Q ss_pred HHHHHHHHHHH
Q 001791 204 AALNAVINFIQ 214 (1012)
Q Consensus 204 ~a~~~l~~~~~ 214 (1012)
.+++|...+..
T Consensus 237 hviRcYlrLsd 247 (293)
T KOG3036|consen 237 HVIRCYLRLSD 247 (293)
T ss_pred HHHHHHHHhcC
Confidence 78777776654
No 251
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.76 E-value=4.2 Score=36.47 Aligned_cols=78 Identities=18% Similarity=0.277 Sum_probs=61.4
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhcCC--CCChHHHHHHHHHHHHHhhcCC
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDD--FQNPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~l~~--~~~~~v~~~a~~al~~l~~~~~ 493 (1012)
...+..|.+.+++++|.++..|+..+..+.+.++..+...+.. ..+..+.+.+.. ..++.|+..+...+......++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4567788888999999999999999999999998876544444 556666666654 2577899999999999888776
Q ss_pred c
Q 001791 494 P 494 (1012)
Q Consensus 494 ~ 494 (1012)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 4
No 252
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.71 E-value=7.1 Score=41.41 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=70.5
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh---hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN---QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
.+..+++.+..+++.++..|+..++.+...-+..... ..++.++..+-+.++. ++..++..|+.++..++..-.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~-~~~~~~~~av~~L~~LL~~~~-- 182 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSS-SDSELQYIAVQCLQNLLRSKE-- 182 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-H-HHH---HHHHHHHHHHHTSHH--
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHhCcch--
Confidence 5566667888889999999999999998776544322 3344444444444433 345567888999999985432
Q ss_pred cccCcH--HHHHHHHHHHh-----hcC--ChhHHHHHHHHHHHHHHHhH--hhhHhhHhhhhHHHHHHHhhc
Q 001791 496 ILTPYL--DGIVSKLLVLL-----QNG--KQMVQEGALTALASVADSSQ--EHFQKYYDAVMPFLKAILVNA 556 (1012)
Q Consensus 496 ~l~~~~--~~il~~l~~~l-----~~~--~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~il~~l~~~l~~~ 556 (1012)
.+..+ ...++.+...+ .+. +..+.-.++-|+=.+..... +.+... .++|.+.++++..
T Consensus 183 -~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~--~~i~~L~~i~~~~ 251 (312)
T PF03224_consen 183 -YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKK--YLIPLLADILKDS 251 (312)
T ss_dssp -HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTT--SHHHHHHHHHHH-
T ss_pred -hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhcc--chHHHHHHHHHhc
Confidence 11111 45566666666 122 23455555555543332111 122222 2888888888753
No 253
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=32 Score=38.16 Aligned_cols=152 Identities=11% Similarity=0.152 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC-CChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHH
Q 001791 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKL 508 (1012)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l 508 (1012)
..+..-++++..+..++....+.- +.++|.+++.+-+- ....++..++..++.+.+-.... ...+..++..+
T Consensus 401 ~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~--p~~le~v~~~~ 473 (559)
T KOG2081|consen 401 ASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQH--PELLEPVLRYI 473 (559)
T ss_pred CchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHH
Confidence 356667777777777777665433 44555555543321 12347888888888887655422 12333344444
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhH
Q 001791 509 LVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDA 588 (1012)
Q Consensus 509 ~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~ 588 (1012)
...+.... ....+..++..++..+.....+.++.+...+........+.+... .+..++.+...++..+..+.+
T Consensus 474 ~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~~e~a~----l~~~~s~i~~~lp~~k~~~~~ 547 (559)
T KOG2081|consen 474 RQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQINEEAAC----LLQGISLIISNLPAHKAKIAL 547 (559)
T ss_pred HHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccHHHHH----HHHHHHHHHhcCCHhhhhHHH
Confidence 44444333 455566677777777766555544444433333222111111110 233445555555655555555
Q ss_pred HHHHHH
Q 001791 589 KQVMEV 594 (1012)
Q Consensus 589 ~~i~~~ 594 (1012)
+++.+.
T Consensus 548 ~el~~~ 553 (559)
T KOG2081|consen 548 EELCEP 553 (559)
T ss_pred HHHhhH
Confidence 555543
No 254
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.42 E-value=4.4 Score=36.75 Aligned_cols=78 Identities=13% Similarity=0.293 Sum_probs=61.9
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh-hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCc
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTP 494 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~ 494 (1012)
...+..|.+.+.+.++.|...|+..+..+++.+|..+..+ .-..++..+.+.+.+..++.|+..+...+......+..
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888999999999999999999999998876432 23456677777666545788999999999998887764
No 255
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=90.37 E-value=44 Score=39.46 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=92.0
Q ss_pred cCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc-chHhHHHHHHHHHHHHHhcccCCCCc----
Q 001791 67 RSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILPENGW---- 141 (1012)
Q Consensus 67 ~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~~~~~---- 141 (1012)
.+.++..++.|..-|++ |+.-+ .....|.....+. .+-++|-.+..-+.....+.|.+..-
T Consensus 14 qs~~p~s~k~AE~~Lrq---------we~q~-----gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i~ 79 (947)
T COG5657 14 QSPDPPSVKCAEERLRQ---------WEKQH-----GFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSIL 79 (947)
T ss_pred cCCCCchHhhHHHHHHh---------hhccc-----cHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCCC
Confidence 47889999999999999 77532 2334455544432 46678888887788777765542100
Q ss_pred c----hHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhc
Q 001791 142 P----ELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT 217 (1012)
Q Consensus 142 ~----~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~ 217 (1012)
| -+-..++.++-+.+......-..+++.++...-+ ..++++++-+...|++. +..+-...+..+..++..+.
T Consensus 80 p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfP---deWpTL~~DL~~~Ls~~-D~~tn~~~L~~~h~Ifk~~r 155 (947)
T COG5657 80 PDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFP---DEWPTLVPDLLSLLSEK-DMVTNENSLRVLHHIFKRLR 155 (947)
T ss_pred CccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCc---ccchhHHHHHHhhhccc-chHHHHHHHHHHHHHHHHHh
Confidence 0 1224455555444433333344555666554222 25899999888888885 65555566666666665542
Q ss_pred Cc-chHhHHHhhHHHHHHHHHHHH
Q 001791 218 SS-ADRDRFQDLLPLMMRTLTESL 240 (1012)
Q Consensus 218 ~~-~~~~~~~~~~~~ll~~l~~~l 240 (1012)
.. -....|....|.+...+...+
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pfl 179 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPFL 179 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHH
Confidence 11 123456666666666555543
No 256
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=90.19 E-value=23 Score=36.01 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHHhhCCCChh-HHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhh
Q 001791 378 ASEQLPAYLAAPEWQ-KHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLST 447 (1012)
Q Consensus 378 ~~~~l~~~l~~~~~~-~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~ 447 (1012)
++..+.+.+++.++. ....|+.-++.+++..++...-... ..-..++..+++++++||..|+.++..+..
T Consensus 357 i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 357 IVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 444455555554433 3456788888888887763322211 133577888999999999999998876543
No 257
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=90.18 E-value=0.59 Score=31.57 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=26.6
Q ss_pred HHHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001791 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1012)
..+|.++..++++++.++..|+|+|++++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999986
No 258
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.73 E-value=32 Score=36.98 Aligned_cols=220 Identities=13% Similarity=0.100 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhh----h-H
Q 001791 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQ----Y-I 174 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~----~-~ 174 (1012)
.-..+...+...+.+|.+.........++..-.... ....-++++..+...+.+..+.+|+.-+..++..+. . .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~ 97 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS 97 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH
Confidence 344566778888888888887777777777766554 223446788999999999988899999999988875 1 1
Q ss_pred hhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHH--h--hcCcchHh-HHHhh----HHHHH--HHHHHHHhcC
Q 001791 175 GDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQ--C--LTSSADRD-RFQDL----LPLMM--RTLTESLNNG 243 (1012)
Q Consensus 175 ~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~--~--~~~~~~~~-~~~~~----~~~ll--~~l~~~l~~~ 243 (1012)
.....+..+.+...+.+...++ ........+.+...++. . ........ ....+ =|.++ +.+.+.+ .
T Consensus 98 ~~~~~~~~~~L~~~~~~~~~~p-~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~ 174 (339)
T PF12074_consen 98 LKFAEPFLPKLLQSLKEASANP-LQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A 174 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C
Confidence 2223345666666666666665 22222111111111111 0 00000000 00000 00100 0111111 2
Q ss_pred ChHHHHHHHHHHHHHHccchHHHHHhH-HHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHH
Q 001791 244 NEATAQEALELLIELAGTEPRFLRRQL-VDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRL 322 (1012)
Q Consensus 244 ~~~~~~~~~~~L~~l~~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l 322 (1012)
+++.....++++..+.........+.. ..+-..++..+........+|..|.+.+..+... .|.. +...+
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~---~~~~------l~~~l 245 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS---NPEL------LSKSL 245 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh---ChHH------HHHHH
Confidence 455666677777777665544333222 2333333333433434788999999999988773 3321 34556
Q ss_pred HHHHHHhhcc
Q 001791 323 FAILMSMLLD 332 (1012)
Q Consensus 323 ~~~l~~~l~~ 332 (1012)
+..+..++..
T Consensus 246 i~~l~~~l~~ 255 (339)
T PF12074_consen 246 ISGLWKWLSS 255 (339)
T ss_pred HHHHHHHHHh
Confidence 6666665554
No 259
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.53 E-value=77 Score=41.00 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=121.1
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCC---CHHHHHHHHHHHHHhhhhHhhhccccH
Q 001791 106 SMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD---SVKLQESAFLIFAQLSQYIGDTLTPHL 182 (1012)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~---~~~~r~~al~~l~~l~~~~~~~~~~~~ 182 (1012)
..++..+.....+.+|+.++.+++++... +..-....++..+...+.+. ++..+.+++.+++...+.++.....-.
T Consensus 54 ~~l~s~~~~~~~~p~rkL~s~~i~rl~~~-gd~f~~~~~l~~c~d~l~d~~~~~~q~k~~a~~~l~~~y~~~g~~~~~~~ 132 (2067)
T KOG1822|consen 54 QQLISRLTNGAGPPTRKLISVAIARLISN-GDSFSLYSRLNSCNDFLSDGSPSDPQRKLAALSCLGSLYEHYGRMIGRGL 132 (2067)
T ss_pred HHHHHHHccCCCchhHHHHHHHHHHHHhc-cchhhHHHHHHHhhhhhhcCCCccHHHHHhhccchHHHHHHhhHhhcchH
Confidence 34556666667888999999999988774 11001122333333333333 356777889999999999988776667
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccc
Q 001791 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE 262 (1012)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~ 262 (1012)
...++++.+..+.. ...+|..+...+.+....+....... .....+.......+.+.+..++..+.+|+..+....
T Consensus 133 edt~~if~~~~k~n-~s~~~~~i~~~l~~~~~~~g~~s~~~---~~~k~i~l~~k~~lld~s~~v~iaa~rc~~a~s~~~ 208 (2067)
T KOG1822|consen 133 EDTVQIFTKLVKTN-ESFVRQEIMITLHNALKGMGGTSAAT---ATHKAIRLIAKNSLLDRSFNVKIAAARCLKAFSNLG 208 (2067)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHhccchHHH---HHHHHHHHHHhhhhhhhhHHHHHHhHHHHHHHHhhc
Confidence 88888888887765 67788888888887777664211111 122234444555555666679999999998887655
Q ss_pred hHHH-HHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHh
Q 001791 263 PRFL-RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEA 304 (1012)
Q Consensus 263 ~~~~-~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~ 304 (1012)
+..+ ..-+.....++++.. ......+|....+++..+...
T Consensus 209 ~~~~~~Sele~~~s~cfk~~--~~s~~~~r~a~a~~~~~Lla~ 249 (2067)
T KOG1822|consen 209 GPGLGTSELETLASYCFKGI--EISNSEVRCAVAEFLGSLLAL 249 (2067)
T ss_pred Cccccchhhhhhcceeeeee--ccchHHHHHHHHHHHHHHHhc
Confidence 5443 223334444444433 234566777667777776653
No 260
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.50 E-value=0.66 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=26.3
Q ss_pred hHHHHHHhhccCCChhHHHHHHHHHHHHH
Q 001791 923 TYLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1012)
Q Consensus 923 ~l~~~~l~~l~~~~~~vr~~a~~~lg~l~ 951 (1012)
-.+|.++..|++.++.++..|+|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36888999999999999999999999886
No 261
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.41 E-value=35 Score=36.94 Aligned_cols=234 Identities=16% Similarity=0.167 Sum_probs=129.5
Q ss_pred CcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh--hc-cccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHh
Q 001791 140 GWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD--TL-TPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQC 215 (1012)
Q Consensus 140 ~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~--~~-~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~ 215 (1012)
.|..+.+.++..+-+++..+|.+|++++++++..... .+ .-..+. ++..+|..+ .+..=|..|++.+..++..
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~---~ii~SL~~~~~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDI---FIIRSLDRDNKNDVEREQALKLIRAFLEI 98 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCch---hhHhhhcccCCChHHHHHHHHHHHHHHHh
Confidence 6777888888766666689999999999988875332 11 112222 333344433 2445588999999999986
Q ss_pred hcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHH--hHHHHHHHHHHhhccCCcchHHHHH
Q 001791 216 LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR--QLVDVVGSMLQIAEAESLEEGTRHL 293 (1012)
Q Consensus 216 ~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~vr~~ 293 (1012)
... .+.+ =..+++.+.....++++..|..|+++|.+++-..|+.+.. -+..++..+.. . .-++...
T Consensus 99 ~~~---~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~--~~~~~~~ 166 (371)
T PF14664_consen 99 KKG---PKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----G--SFSISES 166 (371)
T ss_pred cCC---cccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----c--cHhHHHH
Confidence 321 1111 1267778888888888889999999999999888876532 23333333322 1 1124445
Q ss_pred HHHHHHHHHHhhhccchhhhcc--hhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCC
Q 001791 294 AIEFVITLAEARERAPGMMRKL--PQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGG 371 (1012)
Q Consensus 294 a~~~l~~l~~~~~~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~ 371 (1012)
.+..+..+... |...+.+ ...++.++..+...-. +. ..++ .+...+..+..++..+-+.-++
T Consensus 167 l~~~lL~lLd~----p~tR~yl~~~~dL~~l~apftd~~~-------~~--~~~~---~~~~~l~~s~~ai~~~LrsW~G 230 (371)
T PF14664_consen 167 LLDTLLYLLDS----PRTRKYLRPGFDLESLLAPFTDFHY-------RK--IKDD---RELERLQASAKAISTLLRSWPG 230 (371)
T ss_pred HHHHHHHHhCC----cchhhhhcCCccHHHHHHhhhhhhc-------cc--cccc---hHHHHHHHHHHHHHHHHhcCCc
Confidence 55555666552 3221111 1123334433322100 00 0000 0002334445555554443321
Q ss_pred ------CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 001791 372 ------NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE 406 (1012)
Q Consensus 372 ------~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 406 (1012)
+.+ ..+..+...+.-++...|.+.+..+-.+..
T Consensus 231 Ll~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 231 LLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred eeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 111 234444556666788888888877777654
No 262
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.20 E-value=7.9 Score=35.09 Aligned_cols=89 Identities=11% Similarity=0.217 Sum_probs=65.6
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
...+..|.+.+.+.++.++..|+..+..+.+.++..+...+ -..++..+.+.+.+..++.|+..++..+......+..+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 45678888899999999999999999999999887664332 23566666666654367899999999999988877643
Q ss_pred cccCcHHHHHHHH
Q 001791 496 ILTPYLDGIVSKL 508 (1012)
Q Consensus 496 ~l~~~~~~il~~l 508 (1012)
|.++.+....
T Consensus 120 ---~~l~~i~~~y 129 (142)
T cd03569 120 ---PQLKYVVDTY 129 (142)
T ss_pred ---cccHHHHHHH
Confidence 4444444333
No 263
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=88.98 E-value=27 Score=36.68 Aligned_cols=61 Identities=15% Similarity=0.059 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHhH
Q 001791 475 PRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ 535 (1012)
Q Consensus 475 ~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~ 535 (1012)
...+.....+|..+......+.....++.|++.|...+.-+ .++..-.-.+|+-++..+.+
T Consensus 255 e~rkL~lLK~lAEMss~ttaq~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg 317 (460)
T KOG2213|consen 255 EERKLDLLKALAEMSSYTTAQAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG 317 (460)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777665543333445555555555544333 23344444455555444444
No 264
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=88.84 E-value=2.8 Score=38.54 Aligned_cols=105 Identities=16% Similarity=0.188 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcH----------------HHHHHhHHHHHHHHHhhCCCCC----hhH
Q 001791 375 VPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCA----------------KVMVKNLEQVLSMVLNSFRDPH----PRV 434 (1012)
Q Consensus 375 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~----------------~~~~~~l~~i~~~l~~~l~d~~----~~v 434 (1012)
.+.+++.+.+.+++ +.......+..|..+.+... +.+....+.++..+.+.+.... ..+
T Consensus 24 Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~ 102 (148)
T PF08389_consen 24 WPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEEL 102 (148)
T ss_dssp STTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHH
T ss_pred CchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence 44444444444444 34555555555555544322 1233445666666666664332 888
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHH
Q 001791 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAV 485 (1012)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al 485 (1012)
...++.+++.+..+.+.... .-..+++.+++.+++ +..+..|+.+|
T Consensus 103 ~~~~L~~l~s~i~~~~~~~i--~~~~~l~~~~~~l~~---~~~~~~A~~cl 148 (148)
T PF08389_consen 103 VKAALKCLKSWISWIPIELI--INSNLLNLIFQLLQS---PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHTTTS-HHHH--HSSSHHHHHHHHTTS---CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHh--ccHHHHHHHHHHcCC---HHHHHHHHHhC
Confidence 99999999999998876542 224599999999976 44578888775
No 265
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.74 E-value=20 Score=41.97 Aligned_cols=177 Identities=15% Similarity=0.184 Sum_probs=92.7
Q ss_pred CChhHHHHHHHHhcCCChHHHHHHHH--HHHHhhhcCc-hHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccC--CC
Q 001791 19 PDSAPFETLISHLMSTSNEQRSEAEL--LFNLCKQQDP-DSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRD--DS 90 (1012)
Q Consensus 19 ~~~~~l~~ll~~~~s~d~~~r~~A~~--~L~~~~~~~p-~~~~~~l~~il~~---~~~~~vr~~a~~~L~~~i~~~--~~ 90 (1012)
-+.+.+..+.+.+.+..-....+|+. .+-.+.. .| ...+..+.+++.+ ...+.+|..|.+.+..++.+. ..
T Consensus 354 GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~-~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~ 432 (574)
T smart00638 354 GTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTAR-YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNT 432 (574)
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhh-cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555555555443222222222 2223332 34 3456777777764 346678888888888877642 01
Q ss_pred Cccc-CCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhc---CCCHHHHHHHHHH
Q 001791 91 FLWP-RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVS---SDSVKLQESAFLI 166 (1012)
Q Consensus 91 ~~w~-~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~---~~~~~~r~~al~~ 166 (1012)
..+. .+-.+....+...|-++... .+...+.....+|+.+. -+..++.+...+. ..+..+|..|+.+
T Consensus 433 ~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~LkaLGN~g--------~~~~i~~l~~~l~~~~~~~~~iR~~Av~A 503 (574)
T smart00638 433 PSCPDFVLEELLKYLHELLQQAVSK-GDEEEIQLYLKALGNAG--------HPSSIKVLEPYLEGAEPLSTFIRLAAILA 503 (574)
T ss_pred CCCChhhHHHHHHHHHHHHHHHHhc-CCchheeeHHHhhhccC--------ChhHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 1111 00122333333333333332 34444555556666432 2344444444443 2346789999999
Q ss_pred HHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 001791 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVIN 211 (1012)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~ 211 (1012)
|..+....+.. ..+.+++++.+. . .++++|.+|+..+..
T Consensus 504 lr~~a~~~p~~---v~~~l~~i~~n~--~-e~~EvRiaA~~~lm~ 542 (574)
T smart00638 504 LRNLAKRDPRK---VQEVLLPIYLNR--A-EPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHhCchH---HHHHHHHHHcCC--C-CChHHHHHHHHHHHh
Confidence 99887765554 234455555431 2 378999998766643
No 266
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.48 E-value=2.3 Score=36.50 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=44.9
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhH--hHHHHHHhhccCCChhHHHHHHHHHHHHHhh
Q 001791 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYE--TYLPFLLEACNDENQDVRQAAVYGLGVCAEF 953 (1012)
Q Consensus 882 ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~ 953 (1012)
++..+...+.++.++.....|+-=+|++++..+.. ...+. ..=..+++.++++|++||..|+.|+..+..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 44444555533444555556666699999997653 22221 2334567788999999999999999988654
No 267
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.29 E-value=2.2 Score=36.67 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=49.0
Q ss_pred HHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhchhHHhhhh--hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 419 VLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLGPDLQNQFH--PQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 419 i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
++..+...| .+.++.+...||.=||.+++..+..- ..+ -..=..+++.+++ +++.||..|+.++..++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr--~ii~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR--NIIEKLGAKERVMELMNH-EDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH--HHHHHHSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH--HHHHhcChHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 455555555 34478888899999999999875432 222 2345667888888 999999999999998864
No 268
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.16 E-value=85 Score=39.78 Aligned_cols=141 Identities=16% Similarity=0.086 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHH
Q 001791 432 PRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVL 511 (1012)
Q Consensus 432 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~ 511 (1012)
+.-...+..+-+........ ....+.++..+.....+...+++|.++...+..++-.-..-......++|-..+.+.
T Consensus 1501 d~a~~~a~~~~~lm~~~~~~---~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~ 1577 (1710)
T KOG1851|consen 1501 DLAKNSALLCHSLMSLSWIG---HHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESL 1577 (1710)
T ss_pred hHHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 33444555555544433221 123455555555433343688999998888877664322112456778899999999
Q ss_pred hhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhC
Q 001791 512 LQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVG 580 (1012)
Q Consensus 512 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~ 580 (1012)
+.+..-.+|+.|..+++-+.......+.+ +........... ...+......|+..+|+++.+++
T Consensus 1578 l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s--~s~~~i~~HgavlgLgA~VlafP 1641 (1710)
T KOG1851|consen 1578 LNDDQIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQS--KSKDEIKAHGAVLGLGAIVLAFP 1641 (1710)
T ss_pred HcchHHHHHHHHHHHHHHHHhccccccch---Hhhhhhhhhhhh--cchHHHHhhhhHHHHHHHHHhcc
Confidence 99988889999999999988765433332 111112222211 11233445567888898887777
No 269
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.98 E-value=41 Score=42.61 Aligned_cols=162 Identities=17% Similarity=0.245 Sum_probs=97.9
Q ss_pred cchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhH-hhhcc---ccHHHHHHHHH
Q 001791 115 ESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYI-GDTLT---PHLKHLHAVFL 190 (1012)
Q Consensus 115 ~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~-~~~~~---~~~~~l~~~l~ 190 (1012)
..+..||..+.+|++.-++ .+|..++..+.....+.+....+.+...+..+.+.. ...+. ..+...++.+.
T Consensus 1048 s~s~~Irelv~rC~~~nik-----SGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~cl~ 1122 (1514)
T KOG0929|consen 1048 SSSAEIRELVVRCISSNIK-----SGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVKCLE 1122 (1514)
T ss_pred cCcchhHHHHHhhhhhhhh-----hhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHHHHH
Confidence 3567899999999883332 589999999998888888777778888777555543 22222 13445556666
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhhcCc---ch--------Hh-HHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001791 191 NCLTNSNNPDVKIAALNAVINFIQCLTSS---AD--------RD-RFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1012)
Q Consensus 191 ~~l~~~~~~~vr~~a~~~l~~~~~~~~~~---~~--------~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l 258 (1012)
+...+...+..-..+++.+..++....+. .. .+ ....++|.+... .....+...++|..+++.+-.+
T Consensus 1123 ~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~l-s~i~~~~~~~vr~~al~vlF~i 1201 (1514)
T KOG0929|consen 1123 EFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQL-SKIINDYRLEVRKRALEVLFDI 1201 (1514)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhh-hHHhhccHHHHHHHHHHHHHHH
Confidence 65554323344445555555544443221 00 01 122345544433 2233356788999999999999
Q ss_pred HccchHHHHHh-HHHHHHHHHHhhc
Q 001791 259 AGTEPRFLRRQ-LVDVVGSMLQIAE 282 (1012)
Q Consensus 259 ~~~~~~~~~~~-~~~i~~~l~~~~~ 282 (1012)
...++..|.+. ...++..++.+.+
T Consensus 1202 l~~~g~~F~~~~We~v~~~~fpIF~ 1226 (1514)
T KOG0929|consen 1202 LKEHGDDFSKEFWEDVFRILFPIFD 1226 (1514)
T ss_pred HHhhhhhccHHHHHHHHHheeeccc
Confidence 88887766543 4556665555543
No 270
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=87.76 E-value=42 Score=35.83 Aligned_cols=113 Identities=17% Similarity=0.207 Sum_probs=67.1
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcC---C-CChHHHHHHHHHHHHHHHhh
Q 001791 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTN---S-NNPDVKIAALNAVINFIQCL 216 (1012)
Q Consensus 141 ~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~---~-~~~~vr~~a~~~l~~~~~~~ 216 (1012)
-|.++.++..++.+.+.+....+..+++.+++....-+.-.-.+++..++.++.. . .+..++.+++.++.+++--.
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 3679999999999999999999999999998864432211223444444444422 1 26777788999998887533
Q ss_pred cCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 001791 217 TSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL 258 (1012)
Q Consensus 217 ~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l 258 (1012)
++ ...+.+ ..+.+.+...++...|.+...-+..+.-+
T Consensus 393 ~n---ka~~~~--aGvteaIL~~lk~~~ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 393 SN---KAHFAP--AGVTEAILLQLKLASPPVTFKLLGTLRMI 429 (604)
T ss_pred Cc---hhhccc--cchHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 21 111111 02444444444444555554444444433
No 271
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=87.71 E-value=4.9 Score=33.95 Aligned_cols=62 Identities=10% Similarity=0.152 Sum_probs=54.5
Q ss_pred HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCC
Q 001791 410 KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDD 471 (1012)
Q Consensus 410 ~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~ 471 (1012)
+.+.++.+.++.++...+.+-.+.||..++..+.-+.+..++.....+...+++..+..+..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 35678999999999999999999999999999999999999884467888899888888765
No 272
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=87.52 E-value=5.2 Score=32.49 Aligned_cols=69 Identities=14% Similarity=0.276 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001791 183 KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLI 256 (1012)
Q Consensus 183 ~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~ 256 (1012)
..++..+...+.+..+.++|...++|+..++... ...+..=|+.++..+.....+++++....|++++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~-----~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSR-----GENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHh-----HHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4455555555444448899999999999999874 34455568889999888888878888888888775
No 273
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=87.32 E-value=11 Score=37.59 Aligned_cols=134 Identities=9% Similarity=0.075 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHccccchhhHHH-----HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhh--HhHHHHHHhh
Q 001791 859 QVGEILGTLIKTFKAAFLPFFDE-----LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY--ETYLPFLLEA 931 (1012)
Q Consensus 859 ~~~~~l~~l~~~~~~~~~~~~~~-----ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~~l~~ 931 (1012)
++..++..++. +++.-.+++.. +.|.+....+..+-...|..+++++|.+++.-...+..|+ ..++|.+++.
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 56666666666 44433333333 5566655433223355688999999999997666666653 5899999999
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCC-----chHHHHHHHHHHHHHhh---cCCCCCCchhhhhHHHHHHHHHHHH
Q 001791 932 CNDENQDVRQAAVYGLGVCAEFGGS-----VVKPLVGEALSRLNVVI---RHPNALQPENLMAYDNAVSALGKIC 998 (1012)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~-----~~~~~~~~il~~L~~~l---~~~~~~~~~~~~~~~na~~~~~~l~ 998 (1012)
+...+.--|-.|.+.+..+...... ...+.+..+...|.+++ ... .+......+++|--|+.
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~-----pS~RLLKhIIrCYlRLs 217 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ-----PSPRLLKHIIRCYLRLS 217 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC-----CChhHHHHHHHHHHHHc
Confidence 9888888888888888887665421 12233334444443333 221 13456666777766665
No 274
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.26 E-value=6.8 Score=35.55 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCCC-CChhHHHHHHHHHHHhhhhhch
Q 001791 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRD-PHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 376 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
...+..+...+.+.++++..-|+..+..++.+|+..+...+ ..++..+...+.+ .++.|+..++..+...+..++.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 35666777788889999999999999999999997555433 3566667777766 7899999999999999888764
No 275
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.53 E-value=13 Score=33.29 Aligned_cols=78 Identities=9% Similarity=0.195 Sum_probs=59.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcCCCCChH-HHHHHHHHHHHHhhcCCc
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR-VQAHAASAVLNFSENCTP 494 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~-v~~~a~~al~~l~~~~~~ 494 (1012)
...+..+.+.+.+++|.+...|+..+..+.+.++..+.... -..++..+.+.+.+..... |+..+...+......+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 45677888899999999999999999999999887764333 2346777777766633333 999999999888887753
No 276
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=86.50 E-value=13 Score=34.24 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHccc-cchhhHHHHHHhHhhhhcC---CCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccC
Q 001791 859 QVGEILGTLIKTFKA-AFLPFFDELSSYLTPMWGK---DKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACND 934 (1012)
Q Consensus 859 ~~~~~l~~l~~~~~~-~~~~~~~~ll~~l~~~l~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~ 934 (1012)
.+.+++-.++-.+.+ .|-|.+.+++.+-...+.+ +........-++++..+.+....-+.||+..++..+...|+.
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~L~~ 119 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDLLKQ 119 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788877775 6889999999887764432 223334456778888899999999999999999988877763
No 277
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=35 Score=38.57 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=45.2
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001791 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1012)
Q Consensus 377 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1012)
..+..+...+.=.++..|.+.-.++|-+.-..+. -+++..+-+..+|.+..|-..+..++|-+...
T Consensus 640 M~lR~f~h~l~yge~~iRravPLal~llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiGAG 705 (878)
T KOG2005|consen 640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAG 705 (878)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhccccCC
Confidence 3444455555557778888888888877654432 24667777777888888888888887776544
No 278
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.12 E-value=35 Score=42.22 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=54.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHH--HHHHHHHHHHHhhcCCCCCC---c----hhhhhHHHHHHHH
Q 001791 924 YLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKP--LVGEALSRLNVVIRHPNALQ---P----ENLMAYDNAVSAL 994 (1012)
Q Consensus 924 l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~--~~~~il~~L~~~l~~~~~~~---~----~~~~~~~na~~~~ 994 (1012)
++.-+.+...|.-++||+.|+.++=+++...+..+.+ +..-+.+.+.++|+....++ + ..+.-.+..+..+
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence 3444555666888999999999999999888887776 44556777777777333221 1 1234455666677
Q ss_pred HHHHhHccCCCC
Q 001791 995 GKICQFHRDSID 1006 (1012)
Q Consensus 995 ~~l~~~~p~~~~ 1006 (1012)
+-|+..+|+..+
T Consensus 1078 sgIaklf~e~fk 1089 (1610)
T KOG1848|consen 1078 SGIAKLFSENFK 1089 (1610)
T ss_pred HHHHHHHHHHHH
Confidence 777666666543
No 279
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=85.80 E-value=19 Score=32.50 Aligned_cols=101 Identities=8% Similarity=0.173 Sum_probs=69.6
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhh-hhhHH
Q 001791 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFH-PQVLP 463 (1012)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~il~ 463 (1012)
.+.++||..-...+..+..= + ..-...+..+.+.++++++.+...|+..+..+.+.+|..+..... ..++.
T Consensus 13 ~l~~~dw~~ileicD~In~~----~----~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 13 SNREEDWEAIQAFCEQINKE----P----EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred cCCCCCHHHHHHHHHHHHcC----C----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 34457786554444444321 1 112346677888899999999999999999999999887743332 45566
Q ss_pred HHHhhcCC-----CCChHHHHHHHHHHHHHhhcCC
Q 001791 464 ALAGAMDD-----FQNPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 464 ~l~~~l~~-----~~~~~v~~~a~~al~~l~~~~~ 493 (1012)
.+.+.+.. ..++.|+...+..+......++
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66666642 1467899999999988887775
No 280
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.66 E-value=31 Score=33.87 Aligned_cols=73 Identities=10% Similarity=0.115 Sum_probs=58.9
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhh--hHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhc
Q 001791 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEACNDENQDVRQAAVYGLGVCAEFG 954 (1012)
Q Consensus 882 ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~ 954 (1012)
+.|.+....++.+....|..++++||.+++.....+..| ...++|.+++.+...+..-+..|++-++.+.-..
T Consensus 125 lYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD 199 (293)
T KOG3036|consen 125 LYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDD 199 (293)
T ss_pred hHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhcc
Confidence 567777666555566679999999999999987777665 4689999999999888888899999888876554
No 281
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=85.53 E-value=11 Score=34.13 Aligned_cols=79 Identities=13% Similarity=0.270 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcCCCCChH---HHHHHHHHHHHHhhc
Q 001791 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPR---VQAHAASAVLNFSEN 491 (1012)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~---v~~~a~~al~~l~~~ 491 (1012)
-...+..|.+.|.+.+|.++..|+..+..+.+.+++.+.... -..++..+.+.+.+..... |+..+...+......
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 355778888999999999999999999999999987774332 2346666666554423333 899999999888888
Q ss_pred CCc
Q 001791 492 CTP 494 (1012)
Q Consensus 492 ~~~ 494 (1012)
+..
T Consensus 120 f~~ 122 (140)
T PF00790_consen 120 FKS 122 (140)
T ss_dssp TTT
T ss_pred HCC
Confidence 753
No 282
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.52 E-value=58 Score=35.24 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCC
Q 001791 394 HHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQ 473 (1012)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~ 473 (1012)
-..|+..+..+++...-...-.-..++..++++|.-.+..+-......+..++-...... .-.-..++..+++.+.. .
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~-~M~~~~iveKL~klfp~-~ 357 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKI-VMEQNGIVEKLLKLFPI-Q 357 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchH-HHHhccHHHHHHHhcCC-C
Confidence 346677777888877655555557788999999988887777777777777665443322 22334677888888777 7
Q ss_pred ChHHHHHHHHHHHHH
Q 001791 474 NPRVQAHAASAVLNF 488 (1012)
Q Consensus 474 ~~~v~~~a~~al~~l 488 (1012)
++.++......+-++
T Consensus 358 h~dL~~~tl~LlfNl 372 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNL 372 (791)
T ss_pred CHHHHHHHHHHhhhc
Confidence 788877776666554
No 283
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.25 E-value=20 Score=34.44 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=57.5
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1012)
...++.+++..-+++..+|..|+.+++.+.+.- + -+-...+|.++....| +++.+|..|...+..+.+..+
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG---L--vnP~~cvp~lIAL~ts-~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQG---L--VNPKQCVPTLIALETS-PNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC---C--CChHHHHhHhhhhhCC-CChHHHHHHHHHHHHHHHHhH
Confidence 445566666777899999999999999877631 1 2445789999998888 999999999999999998876
No 284
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=84.50 E-value=4.1 Score=37.36 Aligned_cols=90 Identities=12% Similarity=0.220 Sum_probs=49.8
Q ss_pred hhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccc----cCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH-HHh
Q 001791 460 QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL----TPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA-DSS 534 (1012)
Q Consensus 460 ~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l----~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~-~~~ 534 (1012)
++=|.++.+|.. . .++......|+.++.....+.+ .++ +.+.+.+.+.- ..--..|+..+..+. ...
T Consensus 3 eikplLIsCL~~-q--~~k~s~~KiL~~iVs~Va~~v~~~~~~~W-~eL~d~Ils~~----~~e~~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 3 EIKPLLISCLTM-Q--ETKESDFKILRRIVSHVAYEVFDLQEGGW-DELSDCILSLS----ENEPVKAFHIFICLPMPLY 74 (174)
T ss_pred chHHHHHHHHHh-h--cccHhHHHHHHHHHHHHHHHHHhcCCCCc-hhHHHHHHHhh----ccchHHHHHHHHhCCchhh
Confidence 455677777765 2 2234444455554443221111 122 22333333322 122256777777777 455
Q ss_pred HhhhHhhHhhhhHHHHHHHhhcc
Q 001791 535 QEHFQKYYDAVMPFLKAILVNAT 557 (1012)
Q Consensus 535 ~~~~~~~~~~il~~l~~~l~~~~ 557 (1012)
++-+.|+++.++|.+.+.+.++.
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~ 97 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPE 97 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCch
Confidence 66677999999999998887654
No 285
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=84.49 E-value=47 Score=33.33 Aligned_cols=198 Identities=13% Similarity=0.100 Sum_probs=105.3
Q ss_pred HHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCC
Q 001791 61 LAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENG 140 (1012)
Q Consensus 61 l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~ 140 (1012)
|+.-+....+++........|......+ + .....+ -..+..|.+.+....+..+.+.+..+.+.. + ..
T Consensus 5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~--------~-~~~~~v-~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~-~-r~ 72 (234)
T PF12530_consen 5 LLYKLGKISDPELQLPLLEALPSLACHK--------N-VCVPPV-LQTLVSLVEQGSLELRYVALRLLTLLWKAN-D-RH 72 (234)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHHhccC--------c-cchhHH-HHHHHHHHcCCchhHHHHHHHHHHHHHHhC-c-hH
Confidence 3343445667777777777777776553 0 111112 223444444344444445556666665532 1 24
Q ss_pred cchHHHHHHHh-------hc--CCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhh-cCCCChHHHHHHHHHHH
Q 001791 141 WPELLPFMFQC-------VS--SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCL-TNSNNPDVKIAALNAVI 210 (1012)
Q Consensus 141 ~~~ll~~l~~~-------~~--~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~vr~~a~~~l~ 210 (1012)
++.+-+.+... .. +.++....+....+..+|...++ +...+++.+..++ .+. ++.++..+++++.
T Consensus 73 f~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~-~~~~~alale~l~ 147 (234)
T PF12530_consen 73 FPFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC-DEVAQALALEALA 147 (234)
T ss_pred HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 44444444441 11 12234444545677888887766 4778888888888 565 7889999999999
Q ss_pred HHHHhhcCcchHhHHHhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHc--cchHHHHHhHHHHHHHHHHhhccC
Q 001791 211 NFIQCLTSSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELAG--TEPRFLRRQLVDVVGSMLQIAEAE 284 (1012)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~~~~~L~~l~~--~~~~~~~~~~~~i~~~l~~~~~~~ 284 (1012)
.+.+.- .-.+...+ +.+...+. +..+.+.+..++.+.-+.. ...+........++..+++.....
T Consensus 148 ~Lc~~~-----vvd~~s~w----~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 148 PLCEAE-----VVDFYSAW----KVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHh-----hccHHHHH----HHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 998541 22223322 33333232 2344444433333332221 112334455667788888776543
No 286
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.28 E-value=2e+02 Score=40.31 Aligned_cols=175 Identities=11% Similarity=0.180 Sum_probs=105.9
Q ss_pred hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC-------CcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 459 PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC-------TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 459 ~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~-------~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
..+++.+..++.. .++.++.....++..+.... ......|.++.+++.+.++..++...-|......|+.+.
T Consensus 983 ~i~ldal~~~l~~-~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 983 STFLDALVESLSH-ENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHHhc-cchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 4577888888887 78888888888888876542 122345889999999999998888877877778888887
Q ss_pred HHhHhhh-HhhHhhhhHHHHHHHhhccccccc-hhhHHHHHHHHHHHh----hhChhhhhhh-HHHHHH-HHHHHhcCCC
Q 001791 532 DSSQEHF-QKYYDAVMPFLKAILVNATDKSNR-MLRAKSMECISLVGM----AVGKDKFRDD-AKQVME-VLMSLQGSQM 603 (1012)
Q Consensus 532 ~~~~~~~-~~~~~~il~~l~~~l~~~~~~~~~-~lr~~a~~~l~~l~~----~~~~~~~~~~-~~~i~~-~l~~l~~~~~ 603 (1012)
......+ -.+...++..+...+.....+... .+. .+..++-.+.+ ..+.+.-..+ ...++. +...+.+
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~-~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~n--- 1137 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLD-EAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFN--- 1137 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcC---
Confidence 7776432 345566777777666543222111 111 12222222221 1211111111 112222 2222333
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHH
Q 001791 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPL 639 (1012)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~l 639 (1012)
.++.+|+.+..++..++...|......+.+.-+.+
T Consensus 1138 -pN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~l 1172 (3550)
T KOG0889|consen 1138 -PNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVL 1172 (3550)
T ss_pred -CchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44679999999999999888777665555544444
No 287
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=83.52 E-value=26 Score=31.39 Aligned_cols=80 Identities=18% Similarity=0.083 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Q 001791 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1012)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1012)
.-...+..|.+-+++.++.+...|+..+..++..+|..|...+ ..++..|..++..... ...++.++++.+...+.
T Consensus 34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~--~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYP--LPLVKKRILELIQEWAD 111 (133)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHHHHH
Confidence 3456778888888889999999999999999999998775433 3567777776654322 22288888888888887
Q ss_pred hhCh
Q 001791 578 AVGK 581 (1012)
Q Consensus 578 ~~~~ 581 (1012)
+++.
T Consensus 112 ~f~~ 115 (133)
T smart00288 112 AFKN 115 (133)
T ss_pred HHcC
Confidence 7753
No 288
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.27 E-value=1.3e+02 Score=38.23 Aligned_cols=104 Identities=18% Similarity=0.169 Sum_probs=77.7
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHH
Q 001791 385 YLAAPEWQKHHAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1012)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1012)
.+.-.|...|.-|+..++.+.+.... .....++.....+.+...|.+..||.....++..+...++..+ .+|+..++|
T Consensus 49 kL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l-sp~LK~li~ 127 (1312)
T KOG0803|consen 49 KLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL-SPFLKSLIP 127 (1312)
T ss_pred HHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh-hHHHHhhhh
Confidence 33445677788888888887765442 2222344444556667789999999999999999999998887 799999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 464 ALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
..+-..-| ....|..+|...+.....
T Consensus 128 ~wl~~~~d-~~~~vs~aa~~sf~~~f~ 153 (1312)
T KOG0803|consen 128 PWLGGQFD-LDYPVSEAAKASFKDGFA 153 (1312)
T ss_pred hhhheecc-cchHHHHHHHHHHHhhcC
Confidence 99888777 677777777777766554
No 289
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=83.17 E-value=9.1 Score=31.10 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=54.7
Q ss_pred HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHH
Q 001791 882 LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLG 948 (1012)
Q Consensus 882 ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg 948 (1012)
++..+...+...++..+|...+.++..++...|..+..-++.++..+-.+..+.+..+-..|+.++.
T Consensus 18 fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 18 FLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 3444444434567889999999999999999999998888999999999999988888888887654
No 290
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=83.03 E-value=1.8 Score=29.33 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHH
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAI 442 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l 442 (1012)
+.+...+...+.|+++.||.+|..++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 46788999999999999999998653
No 291
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.21 E-value=91 Score=34.91 Aligned_cols=164 Identities=13% Similarity=0.113 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhc-Cc--hHHHHHHHHHHcc---CCCHHHHHHHHHHHHHhcccCCCCcccCC
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQ-DP--DSLTLKLAHLLQR---SPHPEARAMAAVLLRKLLTRDDSFLWPRL 96 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~-~p--~~~~~~l~~il~~---~~~~~vr~~a~~~L~~~i~~~~~~~w~~l 96 (1012)
.+..+|+.+-++|..+|...-+-|..+... .+ +.....|++-+.. +-.+.||.-|...|-++ ..+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~---------Qe~ 162 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY---------QEM 162 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH---------Hhc
Confidence 567778888999999999999988766552 11 2223444444432 66789999999999884 344
Q ss_pred CHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHH-HHHHHHHHHhhhhHh
Q 001791 97 SLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQ-ESAFLIFAQLSQYIG 175 (1012)
Q Consensus 97 ~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r-~~al~~l~~l~~~~~ 175 (1012)
+....+.+++.|...+..+|+..||+.+...+. .-+...|++++...+-+...| .---++|..+.+...
T Consensus 163 ~~neen~~~n~l~~~vqnDPS~EVRr~allni~----------vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ 232 (885)
T COG5218 163 ELNEENRIVNLLKDIVQNDPSDEVRRLALLNIS----------VDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKS 232 (885)
T ss_pred cCChHHHHHHHHHHHHhcCcHHHHHHHHHHHee----------eCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh
Confidence 444567788888888888899999997543322 223446777777777664333 333445555433222
Q ss_pred hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001791 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1012)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1012)
..+.+.. + ++.-++.+. +..|+.++..++.
T Consensus 233 lsi~kri---~-l~ewgl~dR-e~sv~~a~~d~ia 262 (885)
T COG5218 233 LSIDKRI---L-LMEWGLLDR-EFSVKGALVDAIA 262 (885)
T ss_pred cccccee---h-hhhhcchhh-hhhHHHHHHHHHH
Confidence 1221111 1 333344444 4555555555443
No 292
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=82.15 E-value=1.5e+02 Score=37.46 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=45.4
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHH-HHHHHHHhhCCCCChhHHHHHHHHHHHhhhh
Q 001791 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLE-QVLSMVLNSFRDPHPRVRWAAINAIGQLSTD 448 (1012)
Q Consensus 377 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~-~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 448 (1012)
.++..+.+.|++....+--.++-.|-.+...+++...-.++ .-++.+..+++..|..+-..+..+|-++...
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 35556666676666555555565666665555543322222 2467888888888888888888887777654
No 293
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=82.04 E-value=1e+02 Score=35.26 Aligned_cols=184 Identities=11% Similarity=0.151 Sum_probs=95.9
Q ss_pred hhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCC-------hhHHHHHHHHHH
Q 001791 456 QFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK-------QMVQEGALTALA 528 (1012)
Q Consensus 456 ~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~-------~~v~~~a~~~l~ 528 (1012)
.....++..++..... ....+|..|.-++..++.......+.+.+....-.++...+-.+ ...+..+.+.++
T Consensus 278 k~lk~liK~~V~vWst-ge~~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ 356 (661)
T KOG2256|consen 278 KLLKKLIKAVVHVWST-GEESLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLG 356 (661)
T ss_pred HHHHHHHHHHheeecc-CCcchhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhc
Confidence 4455666666666666 67788999999999998887765555555444444433221111 112222222222
Q ss_pred HHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchh-hH---HHHHHHHHHHh-hh-ChhhhhhhHHHHHHHHHHHhc-C
Q 001791 529 SVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRML-RA---KSMECISLVGM-AV-GKDKFRDDAKQVMEVLMSLQG-S 601 (1012)
Q Consensus 529 ~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~l-r~---~a~~~l~~l~~-~~-~~~~~~~~~~~i~~~l~~l~~-~ 601 (1012)
.=....-..---|+.++--.|.+.+.....+....+ -. ..++.+..+.. +. +.....|.+.+++++++.+.. -
T Consensus 357 ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLi 436 (661)
T KOG2256|consen 357 LDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLI 436 (661)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhc
Confidence 111111111123556666666666544222211111 01 12223222222 22 234577777778887776322 1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHH
Q 001791 602 QMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1012)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 641 (1012)
.....-|+|-.+++.+.++++..|- |.|..|.+++.|-.
T Consensus 437 pT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~ 475 (661)
T KOG2256|consen 437 PTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKS 475 (661)
T ss_pred CcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHH
Confidence 1122346888888888888887654 77777766665433
No 294
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=81.25 E-value=9.4 Score=34.24 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=59.1
Q ss_pred hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHH-HHHHHHHHHhhc---CChhHHHHHHHHHHHHHHH
Q 001791 458 HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLD-GIVSKLLVLLQN---GKQMVQEGALTALASVADS 533 (1012)
Q Consensus 458 ~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~-~il~~l~~~l~~---~~~~v~~~a~~~l~~l~~~ 533 (1012)
....+..|.+.+++ +++.++..|+..|..++.+++...-..+.. ..+..+..++.. .+..|+..++..+......
T Consensus 35 ~k~a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 35 PKEAARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35677888888888 899999999999999999998533222222 445557776654 4678999999999888877
Q ss_pred hHh
Q 001791 534 SQE 536 (1012)
Q Consensus 534 ~~~ 536 (1012)
++.
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 764
No 295
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=80.93 E-value=88 Score=33.92 Aligned_cols=232 Identities=14% Similarity=0.134 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHH----hHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhc
Q 001791 232 MMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRR----QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER 307 (1012)
Q Consensus 232 ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~----~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 307 (1012)
+.+.+...+-+++.++|..+++++..++..... +.. +++.++- ..+......+.-|.+|++++..+.+.++
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii---~SL~~~~~~~~ER~QALkliR~~l~~~~- 100 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFII---RSLDRDNKNDVEREQALKLIRAFLEIKK- 100 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhH---hhhcccCCChHHHHHHHHHHHHHHHhcC-
Confidence 333343333344588999999999888765532 222 2233222 2222222344558999999999998521
Q ss_pred cchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcc-hHHHHHHHHHhh
Q 001791 308 APGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTI-VPVASEQLPAYL 386 (1012)
Q Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~~l~~~l 386 (1012)
.+ +.++ ..++..++...... ++..+.++.+++..++-.-+ +-+ ...-+..+.+.+
T Consensus 101 ~~---~~~~---~~vvralvaiae~~-----------------~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~l 156 (371)
T PF14664_consen 101 GP---KEIP---RGVVRALVAIAEHE-----------------DDRLRRICLETLCELALLNP-ELVAECGGIRVLLRAL 156 (371)
T ss_pred Cc---ccCC---HHHHHHHHHHHhCC-----------------chHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHHH
Confidence 11 1222 33444444332221 22345666666666554332 100 011223333344
Q ss_pred CCCChhHHHHHHHHHHHHHhhcHH--HHHH--hHHHHHHHHHhh----CCCCCh-hHHHHHHHHHHHhhhhhchhHH-hh
Q 001791 387 AAPEWQKHHAALIALAQIAEGCAK--VMVK--NLEQVLSMVLNS----FRDPHP-RVRWAAINAIGQLSTDLGPDLQ-NQ 456 (1012)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~~~--~~~~--~l~~i~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~~-~~ 456 (1012)
.+.....-++.+.++-.+.+.... .+.+ .++.++..+... ..+... ..-..+..++..+.+.-+.-+. ..
T Consensus 157 ~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~ 236 (371)
T PF14664_consen 157 IDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM 236 (371)
T ss_pred HhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec
Confidence 443333555666666666655432 1111 234444444433 222221 1233444555555443322210 01
Q ss_pred hhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC
Q 001791 457 FHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 457 ~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1012)
.--.-+..++..|.- +++.+|......+-.++..-.
T Consensus 237 ~~~~~lksLv~~L~~-p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 237 NDFRGLKSLVDSLRL-PNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred CCchHHHHHHHHHcC-CCHHHHHHHHHHHHHHHCCCC
Confidence 111567778888887 888899888888888876443
No 296
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=80.62 E-value=67 Score=32.35 Aligned_cols=127 Identities=13% Similarity=0.253 Sum_probs=77.3
Q ss_pred hcCCCChHHHHHHHHHHHHHHHh----hcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch-----
Q 001791 193 LTNSNNPDVKIAALNAVINFIQC----LTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP----- 263 (1012)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~----- 263 (1012)
++++ ++.|.+.++.|...++.. +......+..-..+..+-..+...+.+.++.++..+++++..++-...
T Consensus 2 l~d~-d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 2 LNDE-DPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp CT-S-SHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCC-cHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 4566 889999999998887664 211111111222233344455556677788999999999987763221
Q ss_pred -------------------------HHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhh
Q 001791 264 -------------------------RFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQF 318 (1012)
Q Consensus 264 -------------------------~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~ 318 (1012)
..++.-...+++.++..+.....+..+-...+..|..+++. . +.+
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~---R-------P~~ 150 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQ---R-------PQF 150 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHH---S-------GGG
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH---h-------hHH
Confidence 12333344677777777765544566667778888888873 2 346
Q ss_pred HHHHHHHHHHhh
Q 001791 319 INRLFAILMSML 330 (1012)
Q Consensus 319 ~~~l~~~l~~~l 330 (1012)
...+++.+..+-
T Consensus 151 ~~~Il~~ll~~~ 162 (239)
T PF11935_consen 151 MSRILPALLSFN 162 (239)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 778888877653
No 297
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.12 E-value=27 Score=31.67 Aligned_cols=80 Identities=24% Similarity=0.187 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHh
Q 001791 500 YLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGM 577 (1012)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~ 577 (1012)
.-...+..+.+-+.+.++.+...|+..+..++..+|..|...+ ..++..|..++.. ..+..++.++++.+...+.
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHH
Confidence 3456778888888888999999999999999999987765422 3566666666643 3456688888888888887
Q ss_pred hhChh
Q 001791 578 AVGKD 582 (1012)
Q Consensus 578 ~~~~~ 582 (1012)
+++.+
T Consensus 115 ~f~~~ 119 (142)
T cd03569 115 AFRNK 119 (142)
T ss_pred HhCCC
Confidence 77643
No 298
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=79.98 E-value=3 Score=33.97 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001791 392 QKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1012)
Q Consensus 392 ~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1012)
..|++++++|+.++...+..+.+.++.++..+....+| ...|+..+-.+++.+-+.-.+.+
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 47899999999999998877778999999998888886 67889999999999887665554
No 299
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=79.28 E-value=17 Score=38.07 Aligned_cols=110 Identities=12% Similarity=0.209 Sum_probs=75.0
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh
Q 001791 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF 457 (1012)
Q Consensus 378 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 457 (1012)
+...-.+...+.+|......|..++.-.++ -.+.+..|.+++++.++.|...|+..++.+...++..+..+.
T Consensus 13 v~KAT~e~nT~enW~~IlDvCD~v~~~~~~--------~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EV 84 (462)
T KOG2199|consen 13 VEKATDEKNTSENWSLILDVCDKVGSDPDG--------GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEV 84 (462)
T ss_pred HHHhcCcccccccHHHHHHHHHhhcCCCcc--------cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHH
Confidence 333334455567898877777666653322 245678888999999999999999999999988876654332
Q ss_pred -hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc
Q 001791 458 -HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE 495 (1012)
Q Consensus 458 -~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~ 495 (1012)
...+...+...+.+...+.|+...-..+....+.+..+
T Consensus 85 sSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~D 123 (462)
T KOG2199|consen 85 SSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKD 123 (462)
T ss_pred hhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccC
Confidence 23344444444543367888888888888888777644
No 300
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=79.21 E-value=12 Score=34.72 Aligned_cols=133 Identities=17% Similarity=0.102 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC----CCcch
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE----NGWPE 143 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~----~~~~~ 143 (1012)
..++++|..+.+++-+++... ..+..+.+ ..+++.+..+.+..-...+..+++.+......- =.-+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~--------~~~~~~~~-~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg 86 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAA--------REEFKEKI-SDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG 86 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT
T ss_pred CCCHhHHHHHHHHHHHHHHHh--------HHHHHHHH-HHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh
Confidence 567899999999999986332 12233333 333443333333333333444444442211000 02246
Q ss_pred HHHHHHHhhc--CCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChH-HHHHHHHHHH
Q 001791 144 LLPFMFQCVS--SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPD-VKIAALNAVI 210 (1012)
Q Consensus 144 ll~~l~~~~~--~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-vr~~a~~~l~ 210 (1012)
+++.+...+. +++......++.++..-|..-... ......-++.+.+..+++.+.. +|..|+-+|.
T Consensus 87 ~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 87 FLESLLPLASRKSKDRKVQKAALELLSAACIDKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 7777888777 667788888888888766542211 0135566677777775543555 7777765554
No 301
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.18 E-value=42 Score=33.09 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCC-CCChhHHHHH-HHHHHHhhhhhchhH
Q 001791 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR-DPHPRVRWAA-INAIGQLSTDLGPDL 453 (1012)
Q Consensus 376 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a-~~~l~~l~~~~~~~~ 453 (1012)
......+.++..+..-..|..|+..++........ ..++.+...+. -+++.+.... ..+++.+..
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~-------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~------ 116 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKKLTE-------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLK------ 116 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H-------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHH------
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH-------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHH------
Confidence 34455566677777888888888777664433221 13334444443 3466665544 344444332
Q ss_pred HhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 001791 454 QNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADS 533 (1012)
Q Consensus 454 ~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~ 533 (1012)
.+ +...+.+.+.+.+ +++-+|..++.++...... .+.+.++..+...+.+++..++..+-.+|..++..
T Consensus 117 --~~-~~~~~~~~~W~~s-~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~ 185 (213)
T PF08713_consen 117 --KH-PEALELLEKWAKS-DNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK 185 (213)
T ss_dssp --HH-GGHHHHHHHHHHC-SSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred --hh-HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence 11 5667777777777 7888888777666544433 56677788888888888888988877777777766
Q ss_pred hHhhhHhhH
Q 001791 534 SQEHFQKYY 542 (1012)
Q Consensus 534 ~~~~~~~~~ 542 (1012)
.++...+|+
T Consensus 186 ~~~~v~~~l 194 (213)
T PF08713_consen 186 DPDEVLEFL 194 (213)
T ss_dssp -HHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555444444
No 302
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.12 E-value=1e+02 Score=33.10 Aligned_cols=176 Identities=14% Similarity=0.072 Sum_probs=98.0
Q ss_pred CcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh----h-cHHHHHHhHHHHHHHHHhhCCCCChhHH----HHHHHHH
Q 001791 372 NTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAE----G-CAKVMVKNLEQVLSMVLNSFRDPHPRVR----WAAINAI 442 (1012)
Q Consensus 372 ~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~----~-~~~~~~~~l~~i~~~l~~~l~d~~~~vr----~~a~~~l 442 (1012)
..+-+.++..+...+++....+|.+-+.+++.+.. . ......+.++.++..+-+....+.+... ..|...+
T Consensus 56 ~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l 135 (339)
T PF12074_consen 56 SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLL 135 (339)
T ss_pred cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHH
Confidence 45667788888889999888899999999999875 2 2234445556666666555555544422 1222222
Q ss_pred HHhhhhhchhHHh-----------hhhh-hhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHH
Q 001791 443 GQLSTDLGPDLQN-----------QFHP-QVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLV 510 (1012)
Q Consensus 443 ~~l~~~~~~~~~~-----------~~~~-~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~ 510 (1012)
. +.....+.... +--. -+-+.++..+.+ +......+.++..++...............-..++.
T Consensus 136 ~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~---~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ 211 (339)
T PF12074_consen 136 A-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLAS---EEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIY 211 (339)
T ss_pred H-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCC---HhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 2 11100000000 0000 111233333322 233455666777776665432211223556677777
Q ss_pred HhhcC--ChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHh
Q 001791 511 LLQNG--KQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILV 554 (1012)
Q Consensus 511 ~l~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~ 554 (1012)
++-++ ...+|..++.++..+....++. .-..++..+.+.+.
T Consensus 212 ll~s~~~~~~vR~~A~~~l~~l~~~~~~~---l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 212 LLCSSNVSWKVRRAALSALKKLYASNPEL---LSKSLISGLWKWLS 254 (339)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHH
Confidence 77777 7899999999999988776654 22334444444443
No 303
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=78.01 E-value=11 Score=31.05 Aligned_cols=61 Identities=18% Similarity=0.068 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHH
Q 001791 934 DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKIC 998 (1012)
Q Consensus 934 ~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~ 998 (1012)
+.+..+|..|+..|+.++...+......-+.+...+.+.+.++.. ...+.=.|+.++..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~----~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKK----PLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHH
Confidence 457899999999999999998877777778999999999988753 4556666666666654
No 304
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.58 E-value=29 Score=30.28 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=53.2
Q ss_pred hHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhc---CCCC-C-CchhhhhHHHHHHHHH
Q 001791 921 YETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR---HPNA-L-QPENLMAYDNAVSALG 995 (1012)
Q Consensus 921 ~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~---~~~~-~-~~~~~~~~~na~~~~~ 995 (1012)
...++..+.+.|++.++.|+..|+..|-.++..+++.|...+..-...+..+.. .++. + .+-+..+|+.|-.++.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 457899999999999999999999999999999998888776543333333322 2222 2 2245666666655544
Q ss_pred HH
Q 001791 996 KI 997 (1012)
Q Consensus 996 ~l 997 (1012)
-|
T Consensus 116 ~i 117 (122)
T cd03572 116 AI 117 (122)
T ss_pred HH
Confidence 43
No 305
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=77.11 E-value=40 Score=29.48 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh---hhHHHHHhhcC-------CCCChHHHHHHHHH
Q 001791 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP---QVLPALAGAMD-------DFQNPRVQAHAASA 484 (1012)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~il~~l~~~l~-------~~~~~~v~~~a~~a 484 (1012)
.+..++..|.+.|++.++.|+.-++.+|..++..-++.+. ..+. .++..+.+.-. +..+..||..|-.+
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~-~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El 113 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFK-RELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQEL 113 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHH-HHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHH
Confidence 4567899999999999999999999999999987665552 2222 23333322221 11345688888888
Q ss_pred HHHHhh
Q 001791 485 VLNFSE 490 (1012)
Q Consensus 485 l~~l~~ 490 (1012)
+..+..
T Consensus 114 ~~~if~ 119 (122)
T cd03572 114 IKAIFS 119 (122)
T ss_pred HHHHhc
Confidence 877654
No 306
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=76.31 E-value=35 Score=30.75 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=57.0
Q ss_pred HHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC------CCChhHHHHHHHHHHHhhhh
Q 001791 377 VASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR------DPHPRVRWAAINAIGQLSTD 448 (1012)
Q Consensus 377 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~ 448 (1012)
..+..+...+++.++++..-|+..+..++.+|+..+...+ ..++..+.+.+. ..++.|+..++..+...+..
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4566677788899999999999999999999987554333 234445555553 35789999999999998887
Q ss_pred hch
Q 001791 449 LGP 451 (1012)
Q Consensus 449 ~~~ 451 (1012)
++.
T Consensus 118 f~~ 120 (139)
T cd03567 118 LPH 120 (139)
T ss_pred hcc
Confidence 753
No 307
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=76.31 E-value=45 Score=30.23 Aligned_cols=79 Identities=5% Similarity=0.114 Sum_probs=56.3
Q ss_pred HHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHH-HHhhcCCC--CChHHHHHHHHHHHHHhhc
Q 001791 417 EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPA-LAGAMDDF--QNPRVQAHAASAVLNFSEN 491 (1012)
Q Consensus 417 ~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~-l~~~l~~~--~~~~v~~~a~~al~~l~~~ 491 (1012)
...+..|.+.+. ++++.+...|+..+..+++.+|..+.... -..++.. +.+.+... .+..|+..+...+......
T Consensus 37 k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 37 KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 345677777776 57899999999999999999988774322 1345554 55555431 2457899999999998887
Q ss_pred CCcc
Q 001791 492 CTPE 495 (1012)
Q Consensus 492 ~~~~ 495 (1012)
+..+
T Consensus 117 f~~~ 120 (141)
T cd03565 117 FRGS 120 (141)
T ss_pred hCCC
Confidence 7643
No 308
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=75.88 E-value=8 Score=30.05 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhh
Q 001791 393 KHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDL 449 (1012)
Q Consensus 393 ~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~ 449 (1012)
.+.+|+.++|.++...... ++++ ++++.+++.. +.+...+|..|+.+++.++...
T Consensus 3 ~lKaaLWaighIgss~~G~--~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGI--QLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHH--HHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 4678999999998754321 2232 5778777766 4778999999999999998754
No 309
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=75.77 E-value=37 Score=40.16 Aligned_cols=77 Identities=9% Similarity=-0.001 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHccccchhhHHH-HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhcc
Q 001791 857 FDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACN 933 (1012)
Q Consensus 857 ~~~~~~~l~~l~~~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~ 933 (1012)
|-.+..+++.++...|...-..... +++.++.+++.+.+..+-..|+.++.-++-..+..+.+|++.++..+...+.
T Consensus 85 Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 85 RLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH
Confidence 3468899999999988877655553 7888888888888888889999999999999888899999999999998773
No 310
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=75.58 E-value=5.4 Score=27.06 Aligned_cols=40 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 001791 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAV 209 (1012)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l 209 (1012)
++.+.+..+.-+ ..+.+...+...+.|+ ++.||.+|++.+
T Consensus 3 l~~iv~~dp~ll--~~~~v~~~i~~rl~D~-s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLL--DSSDVQSAIIRRLSDS-SPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcccc--chHHHHHHHHHHhcCC-ChHHHHHHHHHC
Confidence 444444433332 2457888999999998 999999998753
No 311
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.46 E-value=81 Score=32.19 Aligned_cols=140 Identities=23% Similarity=0.233 Sum_probs=84.3
Q ss_pred HHHHHHHhhCCCC-----hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHh-hCCCCChhHHHHHHHHHHHhhhhhch
Q 001791 378 ASEQLPAYLAAPE-----WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLN-SFRDPHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 378 ~~~~l~~~l~~~~-----~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
.+|.+...+.+++ ...+ .....++.+++..+. +.+..++....+ ..++...-++.. +..+.+.+.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~---~~La~il~~ya~~~fr~~~dfl~~v----~~~l~~~f~- 182 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGL---PNLARILSSYAKGRFRDKDDFLSQV----VSYLREAFF- 182 (262)
T ss_pred HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCC---ccHHHHHHHHHhcCCCCHHHHHHHH----HHHHHHHhC-
Confidence 4455555555544 3344 334566666643221 344455543333 233333333322 222333332
Q ss_pred hHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 001791 452 DLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA 531 (1012)
Q Consensus 452 ~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~ 531 (1012)
.++.-+++..++..+.+ ..+.+|..+...|..++...... .|.-.+++..+.++++.+. -..|++.+..+.
T Consensus 183 ---P~~~~~~l~~Ll~lL~n-~~~w~~~~~L~iL~~ll~~~d~~--~~~~~dlispllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 183 ---PDHEFQILTFLLGLLEN-GPPWLRRKTLQILKVLLPHVDMR--SPHGADLISPLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred ---chhHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhccccCC--CCcchHHHHHHHHHhCCcc---HHHHHHHHHHHH
Confidence 24556777788888888 77889999999999999987644 4688889999999987654 356677766666
Q ss_pred HHhH
Q 001791 532 DSSQ 535 (1012)
Q Consensus 532 ~~~~ 535 (1012)
...|
T Consensus 254 ~~s~ 257 (262)
T PF14225_consen 254 TRSG 257 (262)
T ss_pred hhcc
Confidence 5544
No 312
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=75.21 E-value=1.6e+02 Score=33.75 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=46.7
Q ss_pred HHHHHHHHHH-Hh--hhhhHhhhHhHHHHHHhhcc----CCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhc
Q 001791 902 AICIFDDVAE-QC--REAALKYYETYLPFLLEACN----DENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIR 974 (1012)
Q Consensus 902 ~~~~l~~l~~-~~--~~~~~~~~~~l~~~~l~~l~----~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~ 974 (1012)
++..+..++. .. ...+.|.+..++..++..++ .+....|-.++..|..|+..+|. |-|.+|.++..|-....
T Consensus 400 cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~~~~ 478 (661)
T KOG2256|consen 400 CLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKSVTF 478 (661)
T ss_pred HHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHHhhc
Confidence 5555555554 22 23456777777777777655 35678999999999999988874 55555555555554444
No 313
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.92 E-value=26 Score=35.66 Aligned_cols=105 Identities=19% Similarity=0.197 Sum_probs=70.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001791 381 QLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1012)
Q Consensus 381 ~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1012)
.+.+++.+.++.+|.+|+.-+..+.......+..+-...++.+.+.+.+..+ -.-|..++.+++..- ......+..
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~--~l~~~ll~~ 82 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE--ELRKKLLQD 82 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH--HHHHHHHHH
Confidence 3556788899999999997776665553344555556678888899988877 445666777777643 222334455
Q ss_pred hHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 461 VLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 461 il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
++..++..+.+ +........|..+.++.+
T Consensus 83 ~~k~l~~~~~~-p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 83 LLKVLMDMLTD-PQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHhcC-cccchHHHHHHHHHHhcc
Confidence 66677777777 555566667777777643
No 314
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=74.77 E-value=15 Score=30.28 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHH
Q 001791 154 SDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQ 214 (1012)
Q Consensus 154 ~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~ 214 (1012)
+.++..|..|..+++.++..+++......+.+...+.+.+.|+ .+...+..|+..|..+-.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 3467899999999999999887665555677888888888876 456788888888887743
No 315
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=74.29 E-value=19 Score=33.45 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=81.6
Q ss_pred chhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC--C
Q 001791 354 NYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR--D 429 (1012)
Q Consensus 354 ~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~--d 429 (1012)
.+..+.-++..+....+ +.+...+..++...+...+......++.++..+..+.++.....+ +.+++.+..... .
T Consensus 21 ~r~~a~v~l~k~l~~~~-~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 21 VRSHALVILSKLLDAAR-EEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 45555555555544333 455666777777777765555677777788888777776444332 446666666665 6
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChH-HHHHHHHHHHH
Q 001791 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR-VQAHAASAVLN 487 (1012)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~-v~~~a~~al~~ 487 (1012)
++..+..+++.+++.-+.. .....-.....++.|-+.++..++.. +|..|.-+|..
T Consensus 100 ~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 7888889999998775532 22223355677778888775425555 77777766653
No 316
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=72.65 E-value=78 Score=29.76 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcch----HhHHHhhH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHH
Q 001791 198 NPDVKIAALNAVINFIQCLTSSAD----RDRFQDLL-PLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVD 272 (1012)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~~~~----~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 272 (1012)
+...|..+++.+..+++....... ...+...+ ..+...+.+...++++.+...+++++..+...+...+...+..
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~ 114 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEV 114 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777877777775421100 00111111 2344444444445568888999999999998888888877777
Q ss_pred HHHHHHH-hhccCCcchHHHHHHHHHHHHHHH
Q 001791 273 VVGSMLQ-IAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 273 i~~~l~~-~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
++..++. +++.+.....-|..+++++..+++
T Consensus 115 ~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 7777665 444332233578889999999997
No 317
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=72.64 E-value=1.6e+02 Score=32.63 Aligned_cols=132 Identities=13% Similarity=0.153 Sum_probs=76.7
Q ss_pred HHHHHHHHHccc--cchhhHHH-HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhh-hHhhhHhHHHHHHhhc-cCCC
Q 001791 862 EILGTLIKTFKA--AFLPFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREA-ALKYYETYLPFLLEAC-NDEN 936 (1012)
Q Consensus 862 ~~l~~l~~~~~~--~~~~~~~~-ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~l~~~~l~~l-~~~~ 936 (1012)
.|+...+..... ....++.. +.|.+...+ +...|..-+..+...+++.++. +..|++.+.-...+.. +-.+
T Consensus 215 lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sL----s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~ 290 (589)
T PF11229_consen 215 LCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSL----SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSN 290 (589)
T ss_pred HHHHHHHHhccccccHHHHHHhhcCcchhhhh----hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 345444444432 23344444 344444333 4556777777777777776654 4556665544444433 3577
Q ss_pred hhHHHHHHHHHHHHHhhcCC--chHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHh
Q 001791 937 QDVRQAAVYGLGVCAEFGGS--VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1012)
Q Consensus 937 ~~vr~~a~~~lg~l~~~~~~--~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~ 999 (1012)
++++.+|+.+|....+.-.+ ..-.++-+....+++.+-++-+ +...+..-..+.|+..|-.
T Consensus 291 ~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~ttekIF~lLPn~i~--~~eveLYi~vAkCLSEMtd 353 (589)
T PF11229_consen 291 PELCQSALQGLSQAMKLPSPAQHCWSLLCETTEKIFDLLPNKIQ--RNEVELYIGVAKCLSEMTD 353 (589)
T ss_pred hHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhCccccc--HHHHHHHHHHHHHHhhcCH
Confidence 99999999999985554332 2223345667777777744432 2456666677777776653
No 318
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=72.48 E-value=5.2 Score=26.65 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.2
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhh
Q 001791 419 VLSMVLNSFRDPHPRVRWAAINAIGQLS 446 (1012)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~ 446 (1012)
.++.+++.++++++.++..++++|.+++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777888889999999999999876
No 319
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.81 E-value=19 Score=36.51 Aligned_cols=106 Identities=19% Similarity=0.289 Sum_probs=67.6
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCc
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPY 500 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~ 500 (1012)
..++..+.+.+|.||.+|..-+..+... +......+-...++.+.+.+.+ ..+ ...|..++.++.....-. ...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~~~l~--~~l 79 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQKEELR--KKL 79 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhhHHHH--HHH
Confidence 4456778999999999999777666655 3333357778899999999988 554 466777888887655311 122
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001791 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1012)
Q Consensus 501 ~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~ 532 (1012)
++.++..++..+.++....-..+...+.++++
T Consensus 80 l~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 80 LQDLLKVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 33345555555555544444445555555543
No 320
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=70.97 E-value=2.5e+02 Score=34.11 Aligned_cols=163 Identities=16% Similarity=0.087 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhc----chHhHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhh----Hh
Q 001791 104 LKSMLLQSIQLE----SAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQY----IG 175 (1012)
Q Consensus 104 i~~~ll~~l~~~----~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~----~~ 175 (1012)
+.-.+.+.|... .++.+|.....++..+...... ..+.+++|-+...+-++++..|.-|...+..+... ..
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~~-~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~ 156 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKPL-KLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITD 156 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCCc-cccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCch
Confidence 444566666541 2455777777777766543221 23378889999999889999999999999988664 23
Q ss_pred hhccc-cHHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHh--hHHHHHHHHHHHHhcCChHHHHHH
Q 001791 176 DTLTP-HLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQD--LLPLMMRTLTESLNNGNEATAQEA 251 (1012)
Q Consensus 176 ~~~~~-~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~~~~ 251 (1012)
+.+.. ..+.+...+... +.. .++..-..-=..+..++..++...-...+.. +-| +...+...+.....+.....
T Consensus 157 ~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~-i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 157 EEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDP-IYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred hhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccch-HHHHHHHHhhcccchhHHHH
Confidence 34432 233344444333 221 1222222222333444444422111112222 233 67777777766545667788
Q ss_pred HHHHHHHHccchHHHHHh
Q 001791 252 LELLIELAGTEPRFLRRQ 269 (1012)
Q Consensus 252 ~~~L~~l~~~~~~~~~~~ 269 (1012)
+++|..+.++.+..|...
T Consensus 235 L~~l~~lL~k~~~~FW~~ 252 (727)
T PF12726_consen 235 LRCLSILLEKLGSDFWDA 252 (727)
T ss_pred HHHHHHHHHhCHHHHhcc
Confidence 899999999888776553
No 321
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.92 E-value=8.3 Score=38.20 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001791 376 PVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 376 ~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
+.+.+.+.+++.|++.-.|.+++..+...... ...+.++..+...+.|++..||.+..|+|..++...++
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHH
Confidence 56778888899998866666666555443333 45677888888899999999999999999999876544
No 322
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=70.84 E-value=20 Score=33.64 Aligned_cols=81 Identities=19% Similarity=0.211 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
++..+..++..+.-.|.+.+++|...|..+..-+|.. .+++|.. =.++.||+.|...|++. ++
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~----aLeLL~~~f~d~~VR~yAV~~L~~~------------sd 100 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQ----ALELLDCNFPDEHVREFAVRCLEKL------------SD 100 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHH----HHHHCCCcCCCHHHHHHHHHHHHhC------------CH
Confidence 5778888888887778888899999998887644443 3455554 45699999999998883 45
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001791 99 HTQSSLKSMLLQSIQLES 116 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~ 116 (1012)
+........|+|+|+-|+
T Consensus 101 ~eL~~yL~QLVQaLKyE~ 118 (171)
T cd00872 101 DELLQYLLQLVQVLKYEP 118 (171)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 556666678888888753
No 323
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=70.53 E-value=1.2e+02 Score=30.45 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=47.4
Q ss_pred CcchH-HHHHHHhhcCC-CHHHHHHHHHHHHHhhhhHhhhccccH--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHh
Q 001791 140 GWPEL-LPFMFQCVSSD-SVKLQESAFLIFAQLSQYIGDTLTPHL--KHLHAVFLNCLTNSNNPDVKIAALNAVINFIQC 215 (1012)
Q Consensus 140 ~~~~l-l~~l~~~~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1012)
+.|-+ .|++-...++. .+..|..++-++|.+++..+.+...++ .+++|+++..|+.+ +.-.+..|.-.+.+++..
T Consensus 91 ~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~d 169 (262)
T PF04078_consen 91 HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLD 169 (262)
T ss_dssp TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHS
T ss_pred CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcc
Confidence 44443 46663332221 357889999999999986554432222 46889999988886 777788888888887764
No 324
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=70.44 E-value=27 Score=30.63 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=50.2
Q ss_pred hHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhc
Q 001791 878 FFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFG 954 (1012)
Q Consensus 878 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~ 954 (1012)
++..++|.+...++.++.++.+..++.+++.+....+-. .+.+..++..++........ .+.++-++..+++.-
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-DEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 456688999999976778899999999999998774332 12333444444443333333 467888888888665
No 325
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=70.20 E-value=56 Score=30.74 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHH----------HhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhh
Q 001791 391 WQKHHAALIALAQIAEGCAKVMV----------KNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQ 460 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~~~~~----------~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 460 (1012)
...|.-++..+..+.+..+..+. -.-..+.+.+++.+..+++.+-..++..+..+...++... ...++.
T Consensus 36 ~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~L-k~ele~ 114 (168)
T PF12783_consen 36 ERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHL-KLELEV 114 (168)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34455555555555555444333 1124566777777766678888899999999888887776 567778
Q ss_pred hHHHHHh-hcCCCCC--hHHHHHHHHHHHHHhh
Q 001791 461 VLPALAG-AMDDFQN--PRVQAHAASAVLNFSE 490 (1012)
Q Consensus 461 il~~l~~-~l~~~~~--~~v~~~a~~al~~l~~ 490 (1012)
+++.++. .+.. ++ ...|..++.++..++.
T Consensus 115 ~l~~i~~~il~~-~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 115 FLSHIILRILES-DNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHHcc-CCCcHHHHHHHHHHHHHHHh
Confidence 8888777 4444 33 3566778888888875
No 326
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.19 E-value=2.7e+02 Score=34.31 Aligned_cols=99 Identities=13% Similarity=0.216 Sum_probs=62.9
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccch--HHHHHhH
Q 001791 193 LTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEP--RFLRRQL 270 (1012)
Q Consensus 193 l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~--~~~~~~~ 270 (1012)
-.|- .+.+|...++.|+.++..++. ..+.. ..++.+.-.+.+.+..+|..++++|..+.+... ..+.-++
T Consensus 296 YRDV-~~~IRaiCiqeLgiWi~~yP~----~Fl~d---sYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFt 367 (1048)
T KOG2011|consen 296 YRDV-DPDIRAICIQELGIWIKSYPE----IFLSD---SYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFT 367 (1048)
T ss_pred cccC-chHHHHHHHHHHHHHHHhccH----HHhcc---hHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3455 899999999999999988732 11222 466666667788899999999999999987621 1222222
Q ss_pred HHHHHHHHHhhccCCcchHHHHHHHHHHHH
Q 001791 271 VDVVGSMLQIAEAESLEEGTRHLAIEFVIT 300 (1012)
Q Consensus 271 ~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~ 300 (1012)
..+=..++... ..+.+..||..++.....
T Consensus 368 sRFK~RIVeMa-drd~~~~Vrav~L~~~~~ 396 (1048)
T KOG2011|consen 368 SRFKDRIVEMA-DRDRNVSVRAVGLVLCLL 396 (1048)
T ss_pred HHHHHHHHHHH-hhhcchhHHHHHHHHHHH
Confidence 32223333333 345567777666544433
No 327
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=70.11 E-value=1.6e+02 Score=31.43 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHH
Q 001791 685 LEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRS 743 (1012)
Q Consensus 685 ~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~ 743 (1012)
..+|..|...++.+.++.+ ....+.++.-+.++++. +-+||..|++.|..++..
T Consensus 38 ~k~k~lasq~ip~~fk~fp----~la~~a~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFP----SLADEAIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCc----hhhhHHHHhhhcccccc-chhhHHHHHhccchhccC
Confidence 3456677777777776633 23344555555666653 778999999988877653
No 328
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=69.86 E-value=74 Score=33.94 Aligned_cols=116 Identities=14% Similarity=0.202 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHH--H
Q 001791 182 LKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIEL--A 259 (1012)
Q Consensus 182 ~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l--~ 259 (1012)
.+.++..+++.--.. +..-+..-+.-+..+++.+ .+..|...+..+...+..++.++...+...|+..+..= .
T Consensus 297 ~~~VIrglLK~WP~t-nS~KEVmFL~ElEEILe~i----ep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~ 371 (457)
T KOG2085|consen 297 TETVIRGLLKYWPKT-NSSKEVMFLNELEEILEVI----EPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIR 371 (457)
T ss_pred cHHHHHHHHHhcCCC-CCcceeeeHhhHHHHHHhc----CHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHH
Confidence 455555555543333 3333444566666677665 56778887777888888889888888888888776521 1
Q ss_pred ccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 260 GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
......-...++.+++.+.+... .+-+..+...++..+..+.+
T Consensus 372 ~Li~~n~~~ilPiiFpaLyr~sk-~hWN~~i~~l~~nvlk~f~e 414 (457)
T KOG2085|consen 372 SLISQNAEVILPIVFPALYRNSK-SHWNQAIHNLILNVLKTFME 414 (457)
T ss_pred HHHHhccceeeehhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 11111112234455555555442 23344455555556666555
No 329
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=69.79 E-value=88 Score=37.11 Aligned_cols=94 Identities=20% Similarity=0.253 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHH
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLN-NGNEATAQEALELLIELA 259 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~~~~~L~~l~ 259 (1012)
+-..++..+-.++..+ .-|..++..|+.++..-+.- -..... ..+++.+..++. +.+..+...|+.+|..++
T Consensus 67 ~~K~~~~~l~~~~~~~---~~Rl~~L~Ll~~~v~~qp~~-l~~i~~---t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 67 HDKHLFDKLNDYFVKP---SYRLQALTLLGHFVRSQPPW-LYKILQ---TPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred cHHHHHHHHHHHHcCc---hhHHHHHHHHHHHHhcCCch-HHHHhc---ChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 4566777777777754 67899999999999864211 011111 023333344443 567778889999999999
Q ss_pred ccchHHHHHhHHHHHHHHHHhh
Q 001791 260 GTEPRFLRRQLVDVVGSMLQIA 281 (1012)
Q Consensus 260 ~~~~~~~~~~~~~i~~~l~~~~ 281 (1012)
-..+..+.+|+++++.....++
T Consensus 140 P~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 140 PHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred ccccchhhHHHHHHHHHHHHHH
Confidence 9899999999999998776665
No 330
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=69.11 E-value=1.2e+02 Score=29.54 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhH
Q 001791 397 ALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL 453 (1012)
Q Consensus 397 al~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~ 453 (1012)
.+..++.+.+..+....+.+..++..+...-.+++...|..+-.++|...+.+|++.
T Consensus 20 vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~ 76 (198)
T PF08161_consen 20 VLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQ 76 (198)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHH
Confidence 344555555555554556777788887777777778889999999999999999854
No 331
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=68.67 E-value=62 Score=28.03 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=52.3
Q ss_pred cchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHH--HHHHHHh----hC--CCCChhHHHHHHHHHHH
Q 001791 373 TIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQ--VLSMVLN----SF--RDPHPRVRWAAINAIGQ 444 (1012)
Q Consensus 373 ~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~--i~~~l~~----~l--~d~~~~vr~~a~~~l~~ 444 (1012)
.....++..+...+.+.+|++..-|+..+-.++.++++.+...+.. ++..++. .. .+.+..||..+..++..
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4456788888888999999999999999999999998755544322 2222221 11 24578899988887765
Q ss_pred h
Q 001791 445 L 445 (1012)
Q Consensus 445 l 445 (1012)
.
T Consensus 113 w 113 (115)
T cd00197 113 W 113 (115)
T ss_pred H
Confidence 4
No 332
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=68.24 E-value=7.4 Score=25.89 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHH
Q 001791 924 YLPFLLEACNDENQDVRQAAVYGLGVCA 951 (1012)
Q Consensus 924 l~~~~l~~l~~~~~~vr~~a~~~lg~l~ 951 (1012)
.++.++..+++.++.+++.|+++|+.++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5677777788889999999999999875
No 333
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=67.21 E-value=1e+02 Score=28.41 Aligned_cols=102 Identities=10% Similarity=0.060 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHccccchhhHHH-HHHhHhhhhcCCC-CHHHHHHHHHHHHHHHHHhhhhhHhh-hHhHHHHHHhh
Q 001791 855 EVFDQVGEILGTLIKTFKAAFLPFFDE-LSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCREAALKY-YETYLPFLLEA 931 (1012)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~~~~~~~~~-ll~~l~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~l~~~~l~~ 931 (1012)
.....+..++..+-.+ |-.-|+.+.. ++..+..++..+. +.++-..+++.+..++.+.+....-. -.--++.++..
T Consensus 32 ~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~h 110 (160)
T PF11841_consen 32 EILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRH 110 (160)
T ss_pred HHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHH
Confidence 3445667777777765 4434443333 5666666664333 57778889999999887754422111 12235668888
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCCc
Q 001791 932 CNDENQDVRQAAVYGLGVCAEFGGSV 957 (1012)
Q Consensus 932 l~~~~~~vr~~a~~~lg~l~~~~~~~ 957 (1012)
|+..++++..+|+..+..+..+.++.
T Consensus 111 Lq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 111 LQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999999999999999999988753
No 334
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=66.99 E-value=22 Score=38.99 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcC
Q 001791 394 HHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMD 470 (1012)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~ 470 (1012)
-.|++.+|.++.....- +..-+ ..+.+.++..|++|...|...+...+..+.-.+.+.- ..+ -..++..+.+.+.
T Consensus 406 ~~a~~l~LkS~SrSV~~-LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~-~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 406 FVAIVLFLKSMSRSVTF-LRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLG-AGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHhhHHHHH-HHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchH-HHHHHhhHHHHHHHHhh
Confidence 34566666666654331 11122 2477888999999888777776666665544443322 222 2356677777776
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCcc-cccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 001791 471 DFQNPRVQAHAASAVLNFSENCTPE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVAD 532 (1012)
Q Consensus 471 ~~~~~~v~~~a~~al~~l~~~~~~~-~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~ 532 (1012)
. .+...|....|.+..++-++..+ .+.+...-=++.++...+++...++...++.+.++.-
T Consensus 484 s-KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 484 S-KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred c-chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 6 66789999999999999888643 2333333347888899999999999999999988753
No 335
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=66.50 E-value=2.8e+02 Score=33.09 Aligned_cols=318 Identities=10% Similarity=0.049 Sum_probs=0.0
Q ss_pred cchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcc
Q 001791 141 WPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSA 220 (1012)
Q Consensus 141 ~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~ 220 (1012)
+..|+..+.. .+++......-+.-|..-+-.-+..+...-..+...+.+-+... ...--.-|++++..++...
T Consensus 15 yKkLV~~iFP--r~~e~gpn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~-r~~~v~Iamea~~kLL~~C---- 87 (819)
T KOG1877|consen 15 YKKLVDNIFP--RSPEDGPNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRE-RFGSVKIAMEAYDKLLQAC---- 87 (819)
T ss_pred HHHHHHHhCC--CCCCCCcccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhc-cCcchhhHHHHHHHHHHHH----
Q ss_pred hHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH------ccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHH
Q 001791 221 DRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELA------GTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLA 294 (1012)
Q Consensus 221 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~------~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a 294 (1012)
.+...-+...++..+..++.+.+++.+..++.++.+++ ..|...+..++..+.+.+... .+.+-.+.+|.+.
T Consensus 88 -~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~-~~~~~~~~lr~ag 165 (819)
T KOG1877|consen 88 -KEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER-GDDDMKDCLRAAG 165 (819)
T ss_pred -hhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc-cchhhhhhccHhh
Q ss_pred HHHHHHHHHhhhccchhhhcchhh-HHHHHHHHHHhhccCC-----CCccccCCCCCCccccCCcc-hhhHHHHHHHHHH
Q 001791 295 IEFVITLAEARERAPGMMRKLPQF-INRLFAILMSMLLDIE-----DDPLWHSAETEDEDAGESSN-YSVGQECLDRLAI 367 (1012)
Q Consensus 295 ~~~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~-----~~~~~~~~~~~~ed~~~~~~-~~~a~~~l~~l~~ 367 (1012)
+..+..+...-....-....-.+. ...++|.+...+...+ ..+.........--.+.... .-.+..|+..+..
T Consensus 166 l~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~vla~~cl~~l~~ 245 (819)
T KOG1877|consen 166 LQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPKVLAERCLRELLG 245 (819)
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCcccCcchhHHHHHHHhhc
Q ss_pred HcCCC-cchHHHHHHHHHhhCCCChhHH-HHHHHHHHHHHhhcHH-HHHHhHHHHHHHHHhhC-CCCChhHHHHHHHHHH
Q 001791 368 ALGGN-TIVPVASEQLPAYLAAPEWQKH-HAALIALAQIAEGCAK-VMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIG 443 (1012)
Q Consensus 368 ~~~~~-~~~~~~~~~l~~~l~~~~~~~r-~aal~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~ 443 (1012)
...-. .+-..+-|.+...-.+.-|..- --|+..+..+...... .....+..++..+.... ..+.++.+.....+-.
T Consensus 246 ~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~~r~~~~iv~~~~ 325 (819)
T KOG1877|consen 246 RAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKKPRLGLSIVLVSI 325 (819)
T ss_pred cccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccCccccchhHHHHH
Q ss_pred HhhhhhchhHHhhhhhhhHHHHHhhcC
Q 001791 444 QLSTDLGPDLQNQFHPQVLPALAGAMD 470 (1012)
Q Consensus 444 ~l~~~~~~~~~~~~~~~il~~l~~~l~ 470 (1012)
..+... .+ .++.-.++..++..|+
T Consensus 326 ~~i~~~--~v-~ps~l~i~n~l~rhLR 349 (819)
T KOG1877|consen 326 ALIAAT--SV-GPSVLIIFNDLLRHLR 349 (819)
T ss_pred HHHHhc--cc-chHHHHHHHHHHHHHH
No 336
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=64.38 E-value=28 Score=33.90 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=48.6
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001791 380 EQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 380 ~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
+.+..+..|++.-.|.+|...+...... ....+.++..+...+.|++..||.+..|+|..++...+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~ 174 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPE 174 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHH
Confidence 6677888887655555554444443322 245777888888899999999999999999999876543
No 337
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=63.99 E-value=42 Score=32.46 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHH
Q 001791 361 CLDRLAIALGGNTIVPVASEQLPAYLAAP-EWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAI 439 (1012)
Q Consensus 361 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~ 439 (1012)
+++.++.++.+-...+.+++......++. -|..|.+...++...-+. .....+++.+-..++|....|+.+.-
T Consensus 102 vvD~la~~~V~~~~~~~li~~~~a~~~~~~~w~rraaiv~~l~~~k~~------~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 102 VVDTLANHFVGIPLWPDLIEEWAADAEEDNRWERRAAIVHQLVYKKKT------LDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred HHHHHHHHhhccccCHHHHHHHHhccccchHHHHHHHHHHHHHHhcCc------cchhHHHHHHHHHccChHHHHHHHHH
Confidence 44555555543456667777664444443 366666666666655443 23346888888899999999999999
Q ss_pred HHHHHhhhhhc
Q 001791 440 NAIGQLSTDLG 450 (1012)
Q Consensus 440 ~~l~~l~~~~~ 450 (1012)
|+|.+++.+..
T Consensus 176 WaLrq~~k~~~ 186 (222)
T COG4912 176 WALRQIGKHSN 186 (222)
T ss_pred HHHHHHHhhch
Confidence 99999988443
No 338
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=63.18 E-value=57 Score=30.03 Aligned_cols=81 Identities=21% Similarity=0.240 Sum_probs=58.8
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
++..+..+++.+.-.+.+.+.++.+.|..+..-+|.. .+++|.. -.++.||+.|...|++. +.
T Consensus 37 ~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~----aL~LL~~~~~~~~vr~yAv~~L~~~------------~~ 100 (152)
T cd00864 37 VPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED----ALELLSPKYPDPVVRQYAVRVLESA------------SD 100 (152)
T ss_pred ChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH----HHHHcCCcCCCHHHHHHHHHHHHhC------------CH
Confidence 4567788888887778888888988888876644433 3455543 35699999999998873 45
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 001791 99 HTQSSLKSMLLQSIQLES 116 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~ 116 (1012)
+........|+|+|.-|+
T Consensus 101 ~~l~~ylpQLVQaLkye~ 118 (152)
T cd00864 101 DELLLYLPQLVQALKYEP 118 (152)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 566677788888887653
No 339
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=63.03 E-value=35 Score=31.86 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=52.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCHH
Q 001791 21 SAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLH 99 (1012)
Q Consensus 21 ~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~ 99 (1012)
+..+..++....=.|...+++|.+.|.++..-+|. ..+++|.. =.++.||+.|...|++. +++
T Consensus 45 p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~----~aLeLL~~~f~~~~VR~yAV~~L~~~------------sd~ 108 (166)
T cd00870 45 KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIE----DALELLSPYFTNPVVRKYAVSRLKLA------------SDE 108 (166)
T ss_pred cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHH----HHHHHcCccCCCHHHHHHHHHHHHhC------------CHH
Confidence 45555666655334666778888888877664443 34455543 35688999999888873 355
Q ss_pred HHHHHHHHHHHHHhhcc
Q 001791 100 TQSSLKSMLLQSIQLES 116 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~ 116 (1012)
........|+|+|+-|.
T Consensus 109 eL~~yL~QLVQaLKyE~ 125 (166)
T cd00870 109 ELLLYLLQLVQALKYEN 125 (166)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 55666677888887653
No 340
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=62.93 E-value=1e+02 Score=26.69 Aligned_cols=74 Identities=12% Similarity=0.182 Sum_probs=49.8
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhh-----cCCCCChHHHHHHHHHHHHH
Q 001791 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGA-----MDDFQNPRVQAHAASAVLNF 488 (1012)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~-----l~~~~~~~v~~~a~~al~~l 488 (1012)
....++..+...+.+++|++..-|+.++..+.+..++.+...... .++..+++. .....+..||..+...+...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 456688899999999999999999999999999988766332211 222223221 11114667888777766543
No 341
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.49 E-value=4.5e+02 Score=33.95 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhc
Q 001791 477 VQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA 556 (1012)
Q Consensus 477 v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~ 556 (1012)
|-.....++.++....+ +.+ ..+...++....+.....|-.|+..+..+....|+...+.+++++|+|-+++...
T Consensus 1520 v~~~li~~i~~~~~a~~-~d~----~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~ 1594 (1621)
T KOG1837|consen 1520 VSKLLIAEIASDSVADK-DDL----KPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDE 1594 (1621)
T ss_pred HHHHHHHHHHhhccCCh-hhh----HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhh
Confidence 44555555555543333 223 3334444444456677899999999999999999999999999999999998642
Q ss_pred cccccchhhHHHHHHHHHHHhhhChhhhhhh
Q 001791 557 TDKSNRMLRAKSMECISLVGMAVGKDKFRDD 587 (1012)
Q Consensus 557 ~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~ 587 (1012)
+..+...+...+..+-..+| +.|..|
T Consensus 1595 ----~~~Ve~~~q~li~q~e~~lG-E~l~~y 1620 (1621)
T KOG1837|consen 1595 ----DDEVECLCQKLIRQLEEVLG-EPLQSY 1620 (1621)
T ss_pred ----HHHHHHHHHHHHHHHHHHhc-hhhhhc
Confidence 22344444555555555666 444433
No 342
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=62.24 E-value=2.4e+02 Score=30.69 Aligned_cols=120 Identities=14% Similarity=0.080 Sum_probs=69.8
Q ss_pred hhhhHHHHHHHhCC---ChhHHHHHHHHhcCCChHH--HHHHHHHHHHhhhc-CchHH----HHHHHHHHccCCCHHHHH
Q 001791 6 THLQQSQLAVILGP---DSAPFETLISHLMSTSNEQ--RSEAELLFNLCKQQ-DPDSL----TLKLAHLLQRSPHPEARA 75 (1012)
Q Consensus 6 ~~~~~~~~~~~~~~---~~~~l~~ll~~~~s~d~~~--r~~A~~~L~~~~~~-~p~~~----~~~l~~il~~~~~~~vr~ 75 (1012)
++.+-+++|+-+-. +-..+..+|..+++|+.+. |-+|-+.|+++... |-+.+ +..++.+......++..+
T Consensus 161 a~aV~~evAq~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR 240 (832)
T KOG3678|consen 161 AAAVGREVAQGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELAR 240 (832)
T ss_pred hhhhhHHHHHhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHH
Confidence 35556666653221 3457788899999998765 99999888875432 22222 112222223366677777
Q ss_pred HHHHHHHHhcccCCCCcccCCCHHHHHHH-----HHHHHHHHhhcchHhHHHHHHHHHHHHHhcc
Q 001791 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSL-----KSMLLQSIQLESAKSISKKLCDTVSELASNI 135 (1012)
Q Consensus 76 ~a~~~L~~~i~~~~~~~w~~l~~~~~~~i-----~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~ 135 (1012)
..+-+|.++++.. ++....+ ...++-.... .++.+-++.+.+++.++-+.
T Consensus 241 ~~~~il~~mFKHS---------eet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~ 295 (832)
T KOG3678|consen 241 SVAGILEHMFKHS---------EETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHG 295 (832)
T ss_pred HHHHHHHHHhhhh---------HHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhc
Confidence 7777888887653 2222111 1112222233 56777777888888887653
No 343
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.88 E-value=4.3e+02 Score=33.58 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=86.1
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHH
Q 001791 778 KEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEI-KQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEV 856 (1012)
Q Consensus 778 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~ 856 (1012)
+++-.+|+-.++.++-.++..-|..+.+.....++-.+ .+.|.+...+ . .++-.+++ +++ +.
T Consensus 1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q--~-~~ewngke--------iqk------qw 1069 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQ--N-VSEWNGKE--------IQK------QW 1069 (1610)
T ss_pred ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhcccccc--c-hhhhcchh--------Hhh------hh
Confidence 45567888888889888888888877776666655443 3333321110 0 00000110 011 11
Q ss_pred HHHHHHHHHHHHHHccccc---------hhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhh------hhhHhhh
Q 001791 857 FDQVGEILGTLIKTFKAAF---------LPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCR------EAALKYY 921 (1012)
Q Consensus 857 ~~~~~~~l~~l~~~~~~~~---------~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~------~~~~~~~ 921 (1012)
-+..+-.++.+++.++++| +..++.++..+.... .+.+++....++..+..+....- ..+..+.
T Consensus 1070 tet~~ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~-s~~s~e~slsai~~~qell~sii~~~~ln~~~~~k~ 1148 (1610)
T KOG1848|consen 1070 TETSCLTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLH-SDISPEISLSAIKALQELLFSIIEFGKLNATFTLKI 1148 (1610)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hcCChHhHHHHHHHHHHHHHHHhhhccccchHHHHh
Confidence 2245556666666666554 445555565555544 46677778888888777654421 1111122
Q ss_pred -------HhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcC
Q 001791 922 -------ETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG 955 (1012)
Q Consensus 922 -------~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1012)
+.+.+..-.+-......|.+....+|+..+....
T Consensus 1149 n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl~~~vqs~s 1189 (1610)
T KOG1848|consen 1149 NLVFINYGRFCEVSSSASERTLAKVSQEILTGLIESVQSLS 1189 (1610)
T ss_pred hhhhhhHhhhcccccccchhHHHHHHHHHHhhhHHHHHHHH
Confidence 2222222222233456788888888886666543
No 344
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=61.77 E-value=24 Score=28.91 Aligned_cols=60 Identities=15% Similarity=0.063 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCch
Q 001791 898 ERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVV 958 (1012)
Q Consensus 898 ~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~ 958 (1012)
.|-.++-.++.++...+..+-+|+|.++..+....++ ...|+..+-.+++.+-+...+.-
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W 64 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTW 64 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccH
Confidence 4556777888899888888888999999998887775 77899999999999988776543
No 345
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=61.45 E-value=53 Score=28.82 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=55.0
Q ss_pred HhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC
Q 001791 414 KNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1012)
Q Consensus 414 ~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1012)
.+++.++|.+..++. ...+..|.++...++.++...+-. .+.+..++..+.+.... ... ...+..++..++...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~--~~~l~~l~~~i~~~~~~-~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS--DEVLNALMESILKNWTQ-ETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHHHhcccc-chh--HHHHHHHHHHHHHcc
Confidence 357789999999998 788999999999999999765322 34566666666666655 222 467788888888655
No 346
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.42 E-value=3.1e+02 Score=31.75 Aligned_cols=725 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCC--------CcchHHHHHHHhhcCCCHHHHHHHHH
Q 001791 94 PRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVSSDSVKLQESAFL 165 (1012)
Q Consensus 94 ~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~--------~~~~ll~~l~~~~~~~~~~~r~~al~ 165 (1012)
..++|...-.-...+...|.+ ....+|.+...+.+.++.+....+ ....++..+.+.+.+..+-.|.-++.
T Consensus 290 s~l~p~i~lrq~~~~~~LLds-es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalq 368 (1128)
T COG5098 290 SELSPGIMLRQYEHFDELLDS-ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQ 368 (1128)
T ss_pred hhcCchHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q ss_pred HHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhc-------------CcchHhHHHhhHHHH
Q 001791 166 IFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLT-------------SSADRDRFQDLLPLM 232 (1012)
Q Consensus 166 ~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~-------------~~~~~~~~~~~~~~l 232 (1012)
++..+++........ ...+......+++|. +..||..|++.+..+....+ .+.......+-+..+
T Consensus 369 v~~kifdl~sk~~~~-r~ev~~lv~r~lqDr-ss~VRrnaikl~SkLL~~HPF~~~h~~~l~~~~wek~L~~~E~qlNsl 446 (1128)
T COG5098 369 VLEKIFDLNSKTVGR-RHEVIRLVGRRLQDR-SSVVRRNAIKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAENQLNSL 446 (1128)
T ss_pred HHHHHHhCcccccch-HHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHhcCChhhhccchhhhHHHHhhcchhHhHhhcc
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHccc-----------------------------------hHHHHHhHHHHHHHH
Q 001791 233 MRTLTESLNNGNEATAQEALELLIELAGTE-----------------------------------PRFLRRQLVDVVGSM 277 (1012)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~L~~l~~~~-----------------------------------~~~~~~~~~~i~~~l 277 (1012)
-+...+.+.+.+.++-+.-.+|=..+-... ...+.+.+..+...+
T Consensus 447 k~~~qe~l~D~E~Eveqd~~q~~t~le~~~n~~~es~ien~ve~ina~~t~~lmKl~l~~~yY~da~qfidi~~~~~~~I 526 (1128)
T COG5098 447 KSGLQETLCDGEKEVEQDEGQCRTELEGSFNKSAESRIENEVENINATNTSVLMKLKLMIVYYEDANQFIDIMKEIQDNI 526 (1128)
T ss_pred chhhhccccchHHhhhhhhhhhhhhhccccccchhhhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhh
Q 001791 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSV 357 (1012)
Q Consensus 278 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~ 357 (1012)
..++..+ +..-...+++++.-+-.. -......++++++..+ |.....++ ..+...-
T Consensus 527 s~LLf~k--nk~EV~EsmdF~vlc~~f------~I~~S~~~ikkm~hLv------------W~kgt~de----g~si~~h 582 (1128)
T COG5098 527 STLLFGK--NKTEVNESMDFIVLCFYF------RIDGSREAIKKMFHLV------------WTKGTDDE----GTSIELH 582 (1128)
T ss_pred HHHHhcC--chHHHHHHHHHHHHHHHh------cccchHHHHHHHHHhh------------eecccCCC----CcchhHH
Q ss_pred HHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHH--HHHHhHHHHHHHHHhhC-CCCChhH
Q 001791 358 GQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAK--VMVKNLEQVLSMVLNSF-RDPHPRV 434 (1012)
Q Consensus 358 a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l-~d~~~~v 434 (1012)
...|-+.+...-++..-.......+...+-+-....-.+-+..+.++.--... .+..++-..+=.+...- .|-+..=
T Consensus 583 vlscyk~lf~~~p~ns~~~e~a~~iarnlinls~~aslaeLssleqll~mm~~~~yid~~vIs~Lw~~ys~Qk~d~s~~q 662 (1128)
T COG5098 583 VLSCYKLLFQMKPNNSSLFEFAKEIARNLINLSFEASLAELSSLEQLLGMMYARRYIDKTVISELWSMYSLQKFDFSLLQ 662 (1128)
T ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhccchhHHh
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh--cCCcccccCcHHHHHHHHHHHh
Q 001791 435 RWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE--NCTPEILTPYLDGIVSKLLVLL 512 (1012)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~--~~~~~~l~~~~~~il~~l~~~l 512 (1012)
+......||.++..-.... -.-++.++..-+..-.. .+--.....|.++.++.. ....+...+.-..+.+.+...+
T Consensus 663 ~~gsii~iGml~l~d~~~~-l~gl~~ll~iglg~~gl-~dl~L~rY~cia~~Rv~~~~~~~~~In~~l~~~l~kkl~~~v 740 (1128)
T COG5098 663 ASGSIIHIGMLLLVDMFHS-LVGLSTLLLIGLGVEGL-LDLMLSRYKCIAQIRVRQRVKFDDEINEVLAKNLAKKLEHQV 740 (1128)
T ss_pred hccceEEecchhhhhhHHH-HHHHHHHHHhcCCCchh-HHHHHHHHHHHHHHHHHHhccccHhhhHHHHHHHHHHHHHHh
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHH
Q 001791 513 QNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVM 592 (1012)
Q Consensus 513 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~ 592 (1012)
-+.....- |+..-.+.+..++.-...++...---.++.+.+.++.--. +.-..++++.-
T Consensus 741 v~~t~s~e--------------------y~~~~eqa~sai~~~~k~pD~l~t~li~~~t~~~fgkp~e-eds~~~le~~e 799 (1128)
T COG5098 741 VDVTVSTE--------------------YSISTEQAKSAIMLLEKLPDMLRTSLIAISTVGCFGKPHE-EDSMQYLEELE 799 (1128)
T ss_pred hcccccce--------------------eccchHHHHHHHHHHHhCchHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHH
Q ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcc-cchhhhhHHHHHHhccCCCccccCCCCCccccCCCCcccchh
Q 001791 593 EVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL-PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETI 671 (1012)
Q Consensus 593 ~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~i~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1012)
.+ ..+-.-.+.-+........ ..+.+...|. .-+......-.+.-...-+....+..+-+-.-+..++|+
T Consensus 800 r~-v~l~~l~f~Vg~vaIk~lV-----y~e~ceaefkrrki~ae~~~~v~n~~~~~nns~qd~ge~~~IggtsEddf--- 870 (1128)
T COG5098 800 RL-VKLNRLKFKVGKVAIKPLV-----YEERCEAEFKRRKISAELEENVDNDDSILNNSAQDRGESSRIGGTSEDDF--- 870 (1128)
T ss_pred HH-HhhhceeeEecceeehHHH-----HHHHHhhHHhhhhhHHHHHhhccCCCCcCccchhhcchhhhccCCCHHHH---
Q ss_pred hcCCceeeecchhHHHHHHHHHHHHHHHHHhh-hcccccHHHHHHHhccccCccCCHHHHHHHHHhHHHHHHHHHHHHHc
Q 001791 672 TLGDKRIGIKTSVLEEKATACNMLCCYADELK-EGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEK 750 (1012)
Q Consensus 672 ~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~-~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~ 750 (1012)
..|+..+.+=---.| ..+..-+..+++.++.--+...++.+..+|.-+|..+.=-.
T Consensus 871 -----------------~da~~fikE~ElLyGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS------ 927 (1128)
T COG5098 871 -----------------VDAFFFIKEKELLYGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLS------ 927 (1128)
T ss_pred -----------------HHHHHHHHHHHHhhchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHh------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001791 751 GLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERA 830 (1012)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 830 (1012)
..+...-+|.++..+...++|..|.++.-.++.+.-. ++...+.....|-..+
T Consensus 928 -----------~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vc---------fN~~~de~t~yLyrrL------- 980 (1128)
T COG5098 928 -----------FEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVC---------FNTTADEHTHYLYRRL------- 980 (1128)
T ss_pred -----------HHHHHHHHHHHHHHHhhCCCcceeccceeecccccee---------hhhhhHHHHHHHHHHh-------
Q ss_pred HHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHccccchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHH
Q 001791 831 ERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVA 910 (1012)
Q Consensus 831 ~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~ 910 (1012)
.+.+..+|..++.++..++
T Consensus 981 -------------------------------------------------------------~De~~~V~rtclmti~fLi 999 (1128)
T COG5098 981 -------------------------------------------------------------GDEDADVRRTCLMTIHFLI 999 (1128)
T ss_pred -------------------------------------------------------------cchhhHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHH-----------------HHHHHHHHhh
Q 001791 911 EQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVG-----------------EALSRLNVVI 973 (1012)
Q Consensus 911 ~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~-----------------~il~~L~~~l 973 (1012)
-...--+..+++.+.. .|.|+|..+...|-..+-.++.+....+..++. .|+..|...+
T Consensus 1000 lagq~KVKGqlg~ma~----~L~deda~Isdmar~fft~~a~KdNt~yn~fidifs~ls~~ae~g~e~fk~II~FLt~fI 1075 (1128)
T COG5098 1000 LAGQLKVKGQLGKMAL----LLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDFI 1075 (1128)
T ss_pred HccceeeccchhhhHh----hccCCcchHHHHHHHHHHHHHhcccchhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHHH
Q ss_pred cCCCCCCchhhhhHHHHHHHHHHHHh
Q 001791 974 RHPNALQPENLMAYDNAVSALGKICQ 999 (1012)
Q Consensus 974 ~~~~~~~~~~~~~~~na~~~~~~l~~ 999 (1012)
+.+ ...++-+-+-++|+.+
T Consensus 1076 ~ke-------rh~kql~E~L~~rl~r 1094 (1128)
T COG5098 1076 SKE-------RHQKQLKESLFLRLLR 1094 (1128)
T ss_pred HHH-------HHHHHHHHHHHHHHHh
No 347
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=60.50 E-value=91 Score=40.50 Aligned_cols=121 Identities=19% Similarity=0.230 Sum_probs=78.4
Q ss_pred hcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHH
Q 001791 407 GCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVL 486 (1012)
Q Consensus 407 ~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~ 486 (1012)
+....+..|++.++...-.++..+++.|+.-+......+-..+... +-.+++..|+..+.+ .+..-..+|..+|.
T Consensus 424 ~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~----~qqeVv~~Lvthi~s-g~~~ev~~aL~vL~ 498 (1426)
T PF14631_consen 424 GHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSY----CQQEVVGALVTHIGS-GNSQEVDAALDVLC 498 (1426)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HH----HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHcC-CcHHHHHHHHHHHH
Confidence 3344556788888888888899999999999988888877766321 335677777777655 44444578899999
Q ss_pred HHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 001791 487 NFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSS 534 (1012)
Q Consensus 487 ~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~ 534 (1012)
.++.... +.+.+|. .++..++..+.+-+..--..++..+..++...
T Consensus 499 ~L~~~~~-~~l~~fa-~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 499 ELAEKNP-SELQPFA-TFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHH-H-HHHHHTH-HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHhccH-HHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 9988654 4566663 34455556555544332335677777776543
No 348
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=59.42 E-value=2e+02 Score=28.97 Aligned_cols=94 Identities=18% Similarity=0.306 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch-------------------------HhHHHhhHHHHHHH
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD-------------------------RDRFQDLLPLMMRT 235 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~-------------------------~~~~~~~~~~ll~~ 235 (1012)
.+..+-..+.+.+.+. ++.||..+++.+..++-....... ...+..=-..++..
T Consensus 40 ~~~~lK~~Il~~~~~~-~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~ 118 (239)
T PF11935_consen 40 SMNELKDRILSLWDSE-NPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDR 118 (239)
T ss_dssp HHHHHHHHHHHGGGSS-SHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHH
Confidence 3555666677777776 899999999999998876431100 00111111134455
Q ss_pred HHHHHhcC--ChHHHHHHHHHHHHHHccchHHHHHhHHHHHH
Q 001791 236 LTESLNNG--NEATAQEALELLIELAGTEPRFLRRQLVDVVG 275 (1012)
Q Consensus 236 l~~~l~~~--~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~ 275 (1012)
+...+.++ +......++.+|..++...|.+....++.+..
T Consensus 119 Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~ 160 (239)
T PF11935_consen 119 LLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLS 160 (239)
T ss_dssp HHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 55555543 46677788888998988888765544444433
No 349
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=58.89 E-value=50 Score=30.41 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=58.1
Q ss_pred hhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHHHH-HhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhhhHHHHH
Q 001791 563 MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS-LQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQ 641 (1012)
Q Consensus 563 ~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~ 641 (1012)
.+-..+++|+-.+...+....|.|....+++.... +............-...+.+..+...++.-|.||...+++...+
T Consensus 36 ~vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~ 115 (153)
T PF08146_consen 36 EVESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVD 115 (153)
T ss_pred HHHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556778887777778878899998888877654 22211111122334566778888888999999999999998877
Q ss_pred Hhcc
Q 001791 642 SAQL 645 (1012)
Q Consensus 642 ~~~~ 645 (1012)
.++.
T Consensus 116 ~L~~ 119 (153)
T PF08146_consen 116 LLKQ 119 (153)
T ss_pred HHHH
Confidence 7743
No 350
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.97 E-value=1e+02 Score=37.73 Aligned_cols=129 Identities=14% Similarity=0.235 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhHHHHH-HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCC
Q 001791 394 HHAALIALAQIAEGCAKVMVKNLEQVL-SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDF 472 (1012)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~~~l~~i~-~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~ 472 (1012)
|...+...........+.+...+..++ ..++.+.+|-.|.+|..|...||..+...+..+. -...+..+-=.|.|
T Consensus 262 rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl---~dsYLKYiGWtLsD- 337 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFL---SDSYLKYIGWTLSD- 337 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHh---cchHHHHhcceeec-
Confidence 566666555555544444555555555 3455677899999999999999998887766552 23444444445778
Q ss_pred CChHHHHHHHHHHHHHhhcCC-cccccCcHHHHHHHHHHHh-hcCChhHHHHHHHH
Q 001791 473 QNPRVQAHAASAVLNFSENCT-PEILTPYLDGIVSKLLVLL-QNGKQMVQEGALTA 526 (1012)
Q Consensus 473 ~~~~v~~~a~~al~~l~~~~~-~~~l~~~~~~il~~l~~~l-~~~~~~v~~~a~~~ 526 (1012)
.+..||..+..+|..+...-. ...+.-+....=..++... .+.+..||...+..
T Consensus 338 k~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 338 KNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred CccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 889999999999999988722 1123344444444555554 33445565554443
No 351
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=57.04 E-value=81 Score=30.12 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
.++.+..+|.+..=.+....+.+.+.|..+..-+|.. .+++|.. -.++.||+.|...|++. ++
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~----aL~LL~~~~~~~~Vr~yAV~~L~~~------------~d 105 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPED----ALELLSPKFPDPFVRAYAVERLESA------------SD 105 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHH----HHHHhCccCCCHHHHHHHHHHHHhC------------CH
Confidence 3455556665444445666777777777776644433 3444443 34788999999888763 45
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001791 99 HTQSSLKSMLLQSIQLE 115 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~ 115 (1012)
+........|+|+|.-|
T Consensus 106 ~~l~~yLpQLVQaLr~E 122 (184)
T smart00145 106 EELLLYLLQLVQALKYE 122 (184)
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 56666677888888764
No 352
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.02 E-value=5.6e+02 Score=33.31 Aligned_cols=247 Identities=10% Similarity=0.128 Sum_probs=121.9
Q ss_pred CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHh---hhhhhhHH
Q 001791 387 AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQN---QFHPQVLP 463 (1012)
Q Consensus 387 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~il~ 463 (1012)
.+.+.++|+..+.++. ..+..-...++..+-..-.+.+..+-..+...++.+.......... ..+...++
T Consensus 1047 ~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~sf~d~v~ 1119 (1514)
T KOG0929|consen 1047 RSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMDSFKDCVK 1119 (1514)
T ss_pred ccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhHHHHHHHH
Confidence 3566778887777776 2233446667777777777788888777777777444332221111 11222333
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHh----hc-----CC------cc-cccCcHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 001791 464 ALAGAMDDFQNPRVQAHAASAVLNFS----EN-----CT------PE-ILTPYLDGIVSKLLVLLQNGKQMVQEGALTAL 527 (1012)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~----~~-----~~------~~-~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l 527 (1012)
.+.+...+...+.....++..+.... +. .. .+ ...-|++ ++-.+-....+....+|..++..+
T Consensus 1120 cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP-~l~~ls~i~~~~~~~vr~~al~vl 1198 (1514)
T KOG0929|consen 1120 CLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFP-MLFQLSKIINDYRLEVRKRALEVL 1198 (1514)
T ss_pred HHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeeh-hHhhhhHHhhccHHHHHHHHHHHH
Confidence 33322221111222222222222111 11 11 01 1122333 334444444456788999999999
Q ss_pred HHHHHHhHhhhHh-hHhhhhHHHHHHHhhccccccchh-----hHHHHHHHHHHHhhhC--hhhhhhhHHHHHHHHHHHh
Q 001791 528 ASVADSSQEHFQK-YYDAVMPFLKAILVNATDKSNRML-----RAKSMECISLVGMAVG--KDKFRDDAKQVMEVLMSLQ 599 (1012)
Q Consensus 528 ~~l~~~~~~~~~~-~~~~il~~l~~~l~~~~~~~~~~l-----r~~a~~~l~~l~~~~~--~~~~~~~~~~i~~~l~~l~ 599 (1012)
-.+....|+.|.+ +...+...++.++.+-..+.+... ......++..+..... -+...+.++.++..+....
T Consensus 1199 F~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci 1278 (1514)
T KOG0929|consen 1199 FDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCI 1278 (1514)
T ss_pred HHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988875 446666666666544221111111 1112222222221111 0111222333333333322
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhcCCcccc-hhhhhHHHHHHhc
Q 001791 600 GSQMETDDPTTSYMLQAWARLCKCLGQDFLPY-MSVVMPPLLQSAQ 644 (1012)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-l~~i~~~ll~~~~ 644 (1012)
.. ++..+......||..++...|..|... -..+...+.+.++
T Consensus 1279 ~~---~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~~ 1321 (1514)
T KOG0929|consen 1279 KQ---DNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAFK 1321 (1514)
T ss_pred cC---cchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHHH
Confidence 21 223455566789999999999888853 2445555555443
No 353
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=56.76 E-value=1.5e+02 Score=26.81 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHH-HHHHHhhccccccchhhHHHHHHHHHH
Q 001791 500 YLDGIVSKLLVLLQN-GKQMVQEGALTALASVADSSQEHFQKYY--DAVMPF-LKAILVNATDKSNRMLRAKSMECISLV 575 (1012)
Q Consensus 500 ~~~~il~~l~~~l~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~il~~-l~~~l~~~~~~~~~~lr~~a~~~l~~l 575 (1012)
.-...+..+.+-+.. .++.+...++..+..++..+|..|-..+ ..++.. |...+... ...+..++.++++.+...
T Consensus 35 ~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~-~~~~~~Vk~kil~li~~W 113 (141)
T cd03565 35 GPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPK-NNPPTIVQEKVLALIQAW 113 (141)
T ss_pred cHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHccc-CCCcHHHHHHHHHHHHHH
Confidence 345667777776663 5778888899999999999997765332 345554 55665421 112346888888888888
Q ss_pred HhhhChhhhhhhHHHHHHHH
Q 001791 576 GMAVGKDKFRDDAKQVMEVL 595 (1012)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l 595 (1012)
+.+++.+.-.+++..+++.|
T Consensus 114 ~~~f~~~~~l~~i~~~y~~L 133 (141)
T cd03565 114 ADAFRGSPDLTGVVEVYEEL 133 (141)
T ss_pred HHHhCCCccchHHHHHHHHH
Confidence 87776433334444444443
No 354
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=56.51 E-value=3.7e+02 Score=31.04 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccc-cHHHHHHHHH
Q 001791 119 SISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTP-HLKHLHAVFL 190 (1012)
Q Consensus 119 ~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~-~~~~l~~~l~ 190 (1012)
.+-..++..+..++.. .+...|+++=..|++.+-+++.-....++.+...+++..+.++-. ++..+..++.
T Consensus 243 ~lY~~vl~~Lctfi~~-~~~s~f~eLE~~LL~~vL~~~~l~~lLa~DvWCFlaRygtaeLc~~hv~~L~~Lik 314 (559)
T PF14868_consen 243 SLYQHVLVHLCTFIAS-LSPSAFPELERFLLENVLHPHFLCSLLAMDVWCFLARYGTAELCAHHVNLLAHLIK 314 (559)
T ss_pred hHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 4455666777777655 444699999999999998898888889999988888876655432 3444444433
No 355
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=55.96 E-value=2.8e+02 Score=29.61 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=82.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhhhHh----hhccccH---HHHHHHHH-HhhcCCCC--------hHHHHHHHHH
Q 001791 145 LPFMFQCVSSDSVKLQESAFLIFAQLSQYIG----DTLTPHL---KHLHAVFL-NCLTNSNN--------PDVKIAALNA 208 (1012)
Q Consensus 145 l~~l~~~~~~~~~~~r~~al~~l~~l~~~~~----~~~~~~~---~~l~~~l~-~~l~~~~~--------~~vr~~a~~~ 208 (1012)
++.+...+.+........++..+..++...+ .++...+ ...++.+. .--..... +.+|...++.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777778887777777789999988887322 1111111 11222222 11111101 2899999999
Q ss_pred HHHHHHhhcCcchHhHHHhhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHh------HHHHHHHHHHh
Q 001791 209 VINFIQCLTSSADRDRFQDLLP--LMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQ------LVDVVGSMLQI 280 (1012)
Q Consensus 209 l~~~~~~~~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~------~~~i~~~l~~~ 280 (1012)
+..++.... .....+++. .++..++..+..+++++....+++|.+-+-..+ .+.+. -...+..+..+
T Consensus 138 ~Lsfl~~~~----~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~-~v~r~~K~~~fn~~~L~~l~~L 212 (330)
T PF11707_consen 138 WLSFLSSGD----PELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS-SVSRSTKCKLFNEWTLSQLASL 212 (330)
T ss_pred HHHHHccCC----HHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC-CCChhhhhhhcCHHHHHHHHHH
Confidence 999988652 222222221 235666666666677788888888876442221 11111 11222333332
Q ss_pred hccCC--cchHHHHHHHHHHHHHHH
Q 001791 281 AEAES--LEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 281 ~~~~~--~~~~vr~~a~~~l~~l~~ 303 (1012)
....+ ....++..+-+++..+|.
T Consensus 213 y~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 213 YSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred hcccCCcccchHHHHHHHHHHHHhc
Confidence 22111 123667777777777775
No 356
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=55.37 E-value=94 Score=29.10 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHH
Q 001791 70 HPEARAMAAVLLRK 83 (1012)
Q Consensus 70 ~~~vr~~a~~~L~~ 83 (1012)
++.||+.|...|++
T Consensus 84 d~~VR~yAV~~L~~ 97 (169)
T cd00869 84 DQEVRAHAVQWLAR 97 (169)
T ss_pred ChHHHHHHHHHHHh
Confidence 34555555555554
No 357
>PF14961 BROMI: Broad-minded protein
Probab=55.14 E-value=1.9e+02 Score=36.00 Aligned_cols=135 Identities=13% Similarity=0.199 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCC-HHHHHHHHHHHHHhhhhHhhhc--cccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcch
Q 001791 145 LPFMFQCVSSDS-VKLQESAFLIFAQLSQYIGDTL--TPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSAD 221 (1012)
Q Consensus 145 l~~l~~~~~~~~-~~~r~~al~~l~~l~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~ 221 (1012)
+..+.+.+...+ -++|..|+..|..+.-. ++ .+.++.+...+..+|.|+ ++.+...+++...+++..-+-...
T Consensus 163 lq~i~d~ld~~~P~evR~eAlq~Lc~~p~S---DVls~E~W~~L~~~L~~~LsDp-D~~is~~~L~f~Ak~fssSpl~~t 238 (1296)
T PF14961_consen 163 LQLIADKLDPGQPKEVRLEALQILCSAPPS---DVLSCESWSVLRENLTDALSDP-DPEISDASLRFHAKMFSSSPLNMT 238 (1296)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHhcCChh---hccccccHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCchhhh
Confidence 344455554444 37888888877665433 21 137899999999999998 999999999999988876533333
Q ss_pred HhHHHhhHHHHHHHHHHH----------Hh--cCChHHHHHHHHHHHHHHccchH----HHHHhHHHHHHHHHHhhcc
Q 001791 222 RDRFQDLLPLMMRTLTES----------LN--NGNEATAQEALELLIELAGTEPR----FLRRQLVDVVGSMLQIAEA 283 (1012)
Q Consensus 222 ~~~~~~~~~~ll~~l~~~----------l~--~~~~~~~~~~~~~L~~l~~~~~~----~~~~~~~~i~~~l~~~~~~ 283 (1012)
++.+..++..+-..+... +. .++....-..++++.++-...|. +-++++..|++..+.++..
T Consensus 239 rEiYtsL~~~l~~~Fls~~~~lptl~~giDi~~~~~~rLLk~vrLlneyq~E~ps~WiRhpeK~mEeIVEsTLsLLs~ 316 (1296)
T PF14961_consen 239 REIYTSLANHLESYFLSQKNSLPTLSSGIDITFPDIERLLKKVRLLNEYQKEVPSFWIRHPEKYMEEIVESTLSLLST 316 (1296)
T ss_pred HHHHHHHHHHHHHHHHhccccCccccccccccCccHHHHHHHHHHHHHHHHhcchhhhcCcHHHHHHHHHHHHHHhcc
Confidence 444444433332222110 00 01112223345666655544444 3467888999988877754
No 358
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=54.84 E-value=3e+02 Score=29.47 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHc-cchHHHHHhHH------HHHHHHHHhhccCCcc--------hHHHHHHHHH
Q 001791 233 MRTLTESLNNGNEATAQEALELLIELAG-TEPRFLRRQLV------DVVGSMLQIAEAESLE--------EGTRHLAIEF 297 (1012)
Q Consensus 233 l~~l~~~l~~~~~~~~~~~~~~L~~l~~-~~~~~~~~~~~------~i~~~l~~~~~~~~~~--------~~vr~~a~~~ 297 (1012)
++.+...+++........++++|..++. ..+......+. ..++.++..-...... +++|...+.+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5666777777777888899999999998 44333332222 1222222111100001 2899999999
Q ss_pred HHHHHHh
Q 001791 298 VITLAEA 304 (1012)
Q Consensus 298 l~~l~~~ 304 (1012)
|.++.+.
T Consensus 138 ~Lsfl~~ 144 (330)
T PF11707_consen 138 WLSFLSS 144 (330)
T ss_pred HHHHHcc
Confidence 9999985
No 359
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=54.54 E-value=4.7e+02 Score=31.73 Aligned_cols=469 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhc--CchHHHHHHHHHHcc----CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHH
Q 001791 37 EQRSEAELLFNLCKQQ--DPDSLTLKLAHLLQR----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQ 110 (1012)
Q Consensus 37 ~~r~~A~~~L~~~~~~--~p~~~~~~l~~il~~----~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~ 110 (1012)
+.|-+-..++.+-.+. ..+..+..+++...+ +.+.+.|+++.-++|+++... -+....+|..+++
T Consensus 42 ~~R~rmi~~i~~~~k~~~~~e~aI~~lw~~~~DlI~pN~~Ae~R~~vl~l~kR~v~TQ---------~~~l~I~R~~FF~ 112 (1697)
T KOG3687|consen 42 NNRIRMIGQICEVAKTKKFEEHAIEALWKAVADLIQPNRTAEARHAVLALLKRIVQTQ---------GERLGILRALFFK 112 (1697)
T ss_pred HHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHH
Q ss_pred HHhhcchHhHHHHHHHHHHHHHhcccCCCCcchHH-HHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHH
Q 001791 111 SIQLESAKSISKKLCDTVSELASNILPENGWPELL-PFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVF 189 (1012)
Q Consensus 111 ~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll-~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l 189 (1012)
.+.+.+...--+.....+..+....-.-..+.+=+ +++..++... .-..-+..+..+.+.-+.++..++..++-.-
T Consensus 113 vI~~~p~~edL~~rLe~L~~LTDnG~~It~~Ee~iG~f~l~W~~~~---l~~~~L~~lvnl~kfn~~~lD~~i~~l~vq~ 189 (1697)
T KOG3687|consen 113 VIKDYPSNEDLHERLEVLKALTDNGRHITYLEEELGDFVLQWMDVG---LSSEFLLVLVNLVKFNSCYLDEYIARLMVQM 189 (1697)
T ss_pred HHhcCcchHHHHHHHHHHHHHhhCCccccchHHHHHHHHHHHHHhh---cccHHHHHHHHHHHhcccchhHHHHHHHHHH
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccc-------
Q 001791 190 LNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTE------- 262 (1012)
Q Consensus 190 ~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~------- 262 (1012)
.-.+..-....|-...+..+...+.+. -.-.+-+|.++..++...+ -...-..++++...+....
T Consensus 190 ~c~lc~~t~~~i~~~~l~~l~~v~~y~------~~P~e~lpQ~I~tlcrt~n--v~~~C~~~~k~m~nllgthlg~~~~~ 261 (1697)
T KOG3687|consen 190 ICLLCVRTASSVDIEVLQVLDAVVCYN------CLPAESLPQFIVTLCRTIN--VKELCEPCWKLMRNLLGTHLGHSAIY 261 (1697)
T ss_pred HHHHHHhhccccchhhhhhhhhheeee------ecccchHHHHHHHHhcccc--hhhcCchHHHHHHhhhhcccchHHHH
Q ss_pred --------hHHHHH--------------------------hHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhcc
Q 001791 263 --------PRFLRR--------------------------QLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1012)
Q Consensus 263 --------~~~~~~--------------------------~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 308 (1012)
...+++ +...+++..++.+ ++...-++...+-.+..+++ .
T Consensus 262 ~mc~~~~drA~~eDa~llrgavf~~~m~~~g~~~~~~~~~~~T~v~~~fL~a~--DS~~~iV~yeVIlsi~~~i~----k 335 (1697)
T KOG3687|consen 262 NMCHLMEDRAYMEDAPLLRGAVFFVGMALWGAHRLYSLRNSPTSVFPSFLQAM--DSPNEVVSYEVILSITRLIK----K 335 (1697)
T ss_pred HHHhhhhhhhhhccchhhcchhhhcchhhcccceeeeecccchhhHHHHHHHh--cCccceEEEEEeehhhHHHH----H
Q ss_pred chhhhcchhhHHHHHHHHHHhhccCCCCccccCCCCCCccccCCcchhhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCC
Q 001791 309 PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA 388 (1012)
Q Consensus 309 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~ 388 (1012)
-+......+.+-.++..++..+.+.+.-. -...+..-..++..|+. +.-+..-...+.+++.-
T Consensus 336 ~~l~~~~wD~il~i~S~~vS~~~Y~~~~~-------------l~~iFh~~~~~ve~L~~----qn~~~g~~er~~~lier 398 (1697)
T KOG3687|consen 336 YELQVVAWDILLNIISRLLSQLQYLDSPE-------------LRTIFHDLLTTVEELCD----QNEFHGSQERYFELVER 398 (1697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcchh-------------hhhHHHhhhhHHHHHHh----hhhhcchHHHHHHHHHH
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhC--CCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHH
Q 001791 389 PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSF--RDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALA 466 (1012)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~ 466 (1012)
-..+.-+++++.+-.--...-....+-.-+++..++... ++.+..||-.....+..+.......+-.+.+..++=..+
T Consensus 399 ~ad~rpe~sVlnli~Yr~~~V~A~R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~l 478 (1697)
T KOG3687|consen 399 CADQRPESSVLNLISYRAQSVHAARDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQL 478 (1697)
T ss_pred hhhcCchHHHHHHHHHhhhccCcCCchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEee
Q ss_pred hhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhh
Q 001791 467 GAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVM 546 (1012)
Q Consensus 467 ~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il 546 (1012)
..+.-..+..||..+..+|.++..+|. ...-.-+-++++.+..--.++.+.+-+.-+.+.+.-..-.......++.-+-
T Consensus 479 shi~L~~~~qvr~l~~~~l~N~a~~C~-t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~dI~~aVlgll~~~A 557 (1697)
T KOG3687|consen 479 SHIPLDKDHQVRKLATQLLVNLAEGCH-THHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLEDIKTAVLGLLVILA 557 (1697)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhcc-hhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 001791 547 PFL 549 (1012)
Q Consensus 547 ~~l 549 (1012)
-.|
T Consensus 558 ~kl 560 (1697)
T KOG3687|consen 558 TKL 560 (1697)
T ss_pred HHh
No 360
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=53.92 E-value=5.1e+02 Score=31.90 Aligned_cols=98 Identities=15% Similarity=0.151 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhhhHhhh---cc--ccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHH
Q 001791 159 LQESAFLIFAQLSQYIGDT---LT--PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMM 233 (1012)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~---~~--~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll 233 (1012)
..+.++.+|..+....++- |. ...-..++.+...+....++++..-+++.+..+...-+- .+.+.. ...+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C---v~~~a~--~~vL 1815 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC---VTDLAT--CNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH---HHHHHh--hhHH
Confidence 4567888888888765531 11 122333455555555555778988888888766553210 111111 1244
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHccc
Q 001791 234 RTLTESLNNGNEATAQEALELLIELAGTE 262 (1012)
Q Consensus 234 ~~l~~~l~~~~~~~~~~~~~~L~~l~~~~ 262 (1012)
..+.+.+.+ -|..|..++..|..+.+..
T Consensus 1816 ~~LL~lLHS-~PS~R~~vL~vLYAL~S~~ 1843 (2235)
T KOG1789|consen 1816 TTLLTLLHS-QPSMRARVLDVLYALSSNG 1843 (2235)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHhcCc
Confidence 455555554 6789999999999887644
No 361
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=53.62 E-value=3.2e+02 Score=29.45 Aligned_cols=118 Identities=16% Similarity=0.276 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHH
Q 001791 198 NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSM 277 (1012)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l 277 (1012)
..++....+.+|..++.+...- +... -..++..+...+.+ .....++..|.-.+-.-|..+.+.++.++..+
T Consensus 210 ~~D~~~~~~~~Ls~LisYh~~~-~k~~----qd~iV~~l~~GL~s---~~a~~CI~aLtic~~EmP~s~~k~L~~iL~kL 281 (356)
T PF03542_consen 210 RADLQVCVFPVLSALISYHSHF-SKQE----QDEIVRALESGLGS---KTAKPCIHALTICCYEMPDSMKKLLPSILLKL 281 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CHhH----HHHHHHHHHHHhcc---CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3567778888888888864311 1111 12466666655543 34466777777666667888888888888777
Q ss_pred HHhhccCCcchHHHHHHHHHHHHHHHhhhccc-hhhhcc-hhhHHHHHHHHHHhhc
Q 001791 278 LQIAEAESLEEGTRHLAIEFVITLAEARERAP-GMMRKL-PQFINRLFAILMSMLL 331 (1012)
Q Consensus 278 ~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~-~~~~~~l~~~l~~~l~ 331 (1012)
-++.. ...+..-.++++..+++ .| .....+ .+....++..+++.+.
T Consensus 282 s~i~t----t~~~Ai~ILEFLs~L~~----lP~~ly~nF~~~~y~~VF~I~l~Y~~ 329 (356)
T PF03542_consen 282 SKIST----TPNMAIHILEFLSSLSR----LPNHLYSNFTEDEYKRVFAIALPYTQ 329 (356)
T ss_pred Hhhcc----chhhHHHHHHHHHHHhh----CcHHHhcCCCHHHHHHHHHHHhhccc
Confidence 55442 34466668999999998 45 443332 3455667777777654
No 362
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=53.05 E-value=39 Score=26.35 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhhhchhHHhhhhh--hhHHHHHhhcCCCCChHHHHHHHHHHHHHhhc
Q 001791 435 RWAAINAIGQLSTDLGPDLQNQFHP--QVLPALAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1012)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~~~~~--~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1012)
.++|+|+++.++..-.. ..+++ .+++.+++.....+...+|..|..+|+-+...
T Consensus 4 lKaaLWaighIgss~~G---~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG---IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHH---HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 56899999999874221 23333 68888888877657888999999999988653
No 363
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=51.97 E-value=1.9e+02 Score=30.69 Aligned_cols=78 Identities=13% Similarity=0.089 Sum_probs=57.0
Q ss_pred chHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhH--HHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhc
Q 001791 374 IVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNL--EQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLG 450 (1012)
Q Consensus 374 ~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~ 450 (1012)
.-...+..+...+++.++.+-.-|+-.++.++.+|++.+...+ .++...+...+. ..++.|+...-.++..+++.+.
T Consensus 42 ~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K 121 (462)
T KOG2199|consen 42 GGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFK 121 (462)
T ss_pred ccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 3445677788888899999999999999999999997654332 334455555555 5688888887777777776554
Q ss_pred h
Q 001791 451 P 451 (1012)
Q Consensus 451 ~ 451 (1012)
.
T Consensus 122 ~ 122 (462)
T KOG2199|consen 122 K 122 (462)
T ss_pred c
Confidence 3
No 364
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=51.78 E-value=36 Score=32.53 Aligned_cols=80 Identities=24% Similarity=0.216 Sum_probs=52.1
Q ss_pred ChhHHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHcc-CCCHHHHHHHHHHHHHhcccCCCCcccCCCH
Q 001791 20 DSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 20 ~~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~ 98 (1012)
+++.+..++..+.-.+....+++.+.|..+..-+|.. .+++|.. =.++.||+.|...|++ +++
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~----AL~LL~~~f~~~~VR~yAv~~L~~------------~~d 106 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED----ALELLSPNFPDPFVRQYAVRRLES------------LSD 106 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH----HHHCTSTT---HHHHHHHHHHHCT------------S-H
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH----HHHHHHhhccHHHHHHHHHHHHHH------------cCc
Confidence 4566667777655566677778888888777744432 3444443 2458899998888866 246
Q ss_pred HHHHHHHHHHHHHHhhc
Q 001791 99 HTQSSLKSMLLQSIQLE 115 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~ 115 (1012)
+........|+|+|.-|
T Consensus 107 ~~l~~yLpQLVQaLr~e 123 (184)
T PF00613_consen 107 EELLFYLPQLVQALRYE 123 (184)
T ss_dssp HHHHHHHHHHHHHGGGS
T ss_pred hHHHHHHHHHHHHheec
Confidence 66667778888888765
No 365
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=50.87 E-value=2.4e+02 Score=27.26 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCC-CCcchHHHHHHHhhcCCCHH--HHHHHHHHHHHhhhhHh
Q 001791 99 HTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPE-NGWPELLPFMFQCVSSDSVK--LQESAFLIFAQLSQYIG 175 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~-~~~~~ll~~l~~~~~~~~~~--~r~~al~~l~~l~~~~~ 175 (1012)
+....+...+++... |.-..+|..++.++..+.....+. ...| -.+.+...+..+... ....+-.++..++.-..
T Consensus 3 ~~~~~~~~~llrqa~-EKiDrvR~~A~~~l~~ll~~~~~~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 3 ELVQQIIGGLLRQAA-EKIDRVREVAGKCLQRLLHSQDPTIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCccccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 334444455555554 466789999999999998543331 1222 345555555433211 01122233333332221
Q ss_pred hhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001791 176 DTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELL 255 (1012)
Q Consensus 176 ~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L 255 (1012)
- ..+...++..+.-..... +..+...+..+|..++...+. .......++..++..+.... .+..+....++++
T Consensus 81 ~--~~y~~~ll~Glv~S~G~~-tesl~~~s~~AL~~~~~~~~~--~~~~~~~v~~~l~~il~~~~--~~dRv~vP~l~tl 153 (193)
T PF12612_consen 81 L--PEYRYSLLSGLVVSAGGL-TESLVRASSAALLSYLRELSD--SPEELEQVLSDLLSILKENL--RNDRVVVPLLKTL 153 (193)
T ss_pred c--HHHHHHHHhHHHhcCCCC-chhHHHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHHHHHHhC--CCCCeeecHHHHH
Confidence 1 124555666555555554 677888888888888864311 23334444444444444322 2344555666666
Q ss_pred HHHHcc
Q 001791 256 IELAGT 261 (1012)
Q Consensus 256 ~~l~~~ 261 (1012)
..+.+.
T Consensus 154 ~~Ll~~ 159 (193)
T PF12612_consen 154 DFLLSS 159 (193)
T ss_pred HHHHhC
Confidence 666543
No 366
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=50.83 E-value=2.4e+02 Score=27.26 Aligned_cols=133 Identities=17% Similarity=0.146 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChH--HHHHHHHHHHHHhhcC
Q 001791 415 NLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPR--VQAHAASAVLNFSENC 492 (1012)
Q Consensus 415 ~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~--v~~~a~~al~~l~~~~ 492 (1012)
....++..+++...+.-.+||..|..++..+.....+.+ ++++ -.+.+.+.+.. +... ....+..++..++.-.
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~--~~ip-~~~~L~~i~~~-~~~~~~~w~~~~~~F~~l~~LL 79 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTI--PHIP-HREELQDIFPS-ESEASLNWSSSSEYFPRLVKLL 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--cCCC-cHHHHHHHccc-ccccccccCCHHHHHHHHHHHh
Confidence 345666677777667778999999999999884332211 2222 22344444332 1110 0122333444444333
Q ss_pred CcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHHHhh
Q 001791 493 TPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVN 555 (1012)
Q Consensus 493 ~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~ 555 (1012)
. +..|...++..++......+..+...+..++-....... .-..-+..++..+..++..
T Consensus 80 ~---~~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~-~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 80 D---LPEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELS-DSPEELEQVLSDLLSILKE 138 (193)
T ss_pred c---cHHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHH
Confidence 3 236777888888877776666666666666655554221 1112334555555555554
No 367
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=50.33 E-value=3.1e+02 Score=28.42 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=46.1
Q ss_pred HHHHHHHhhCCCCChh-HHHHHHHHHHHhhhhhchhHHhhh-hhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 418 QVLSMVLNSFRDPHPR-VRWAAINAIGQLSTDLGPDLQNQF-HPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 418 ~i~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~-~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
.++..+...++..++. .-..||.-|+.+.+..|... .-. --..=..+++.+++ ++++|+-.|..++..++.
T Consensus 356 ~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~-~vl~Kyg~k~~im~L~nh-~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 356 EIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEIN-AVLSKYGVKEIIMNLINH-DDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHH-HHHHHhhhHHHHHHHhcC-CCchhhHHHHHHHHHHHh
Confidence 3566666777665555 44567777888877665322 110 01233456777777 899999999999988764
No 368
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=50.28 E-value=4.9e+02 Score=30.69 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
.+..+++.+...-.++ -..|+..+++.+..++..-+ +.-. .++..+...+.+++..+...|-..|..+..
T Consensus 301 ly~rfievLe~lS~D~-L~~vk~raL~ti~~lL~~kP-----EqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~ 370 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDP-LEEVKKRALKTIYDLLTNKP-----EQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLA 370 (988)
T ss_pred HHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHhCCc-----HHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHh
Confidence 3455556665555665 78999999999999987642 1111 456666677778888888888888888887
Q ss_pred cchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 261 TEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 261 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
.+|..-.-.+..|..+++. ++.+......|+-+|.++.-
T Consensus 371 ~HPnMK~Vvi~EIer~~FR----pn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 371 KHPNMKIVVIDEIERLAFR----PNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred hCCcceeehHHHHHHHHcc----cCccccceeehhhhhhhhHh
Confidence 7775433344455554443 44555556677777777654
No 369
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=49.67 E-value=3.5e+02 Score=28.86 Aligned_cols=108 Identities=13% Similarity=0.257 Sum_probs=71.2
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcH----HHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch-hHHhhhh-
Q 001791 385 YLAAPEWQKHHAALIALAQIAEGCA----KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP-DLQNQFH- 458 (1012)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~----~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~- 458 (1012)
+++.++..+-..|...+..+..... +.+..+.+.++..+-.++.++|-..|+.++..||.+...-.. .+...|+
T Consensus 172 ~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~ 251 (335)
T PF08569_consen 172 YVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYIS 251 (335)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT
T ss_pred HhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHC
Confidence 3344444444444444444433322 244567788888888999999999999999999998754221 1112333
Q ss_pred -hhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCC
Q 001791 459 -PQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 459 -~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~ 493 (1012)
+.-+..++..|+| +...+|..|...+.-++.+-.
T Consensus 252 ~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 252 SPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp -HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-SS
T ss_pred CHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHhCCC
Confidence 4567778888999 899999999999999988754
No 370
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=48.02 E-value=1.3e+02 Score=25.97 Aligned_cols=81 Identities=9% Similarity=0.088 Sum_probs=47.9
Q ss_pred CChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHH
Q 001791 430 PHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLL 509 (1012)
Q Consensus 430 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~ 509 (1012)
+.+.+...+.|++... .+...++..+.+.+.. ..+.-+..++..+..++.+++...-..+...+.+.+.
T Consensus 17 S~~~I~~lt~~a~~~~----------~~a~~iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 17 SQPSIQTLTKLAIENR----------KHAKEIVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred cHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 4555555555555442 3556777777777776 5667788999999999998764321112222233444
Q ss_pred HHhhcCChhHHH
Q 001791 510 VLLQNGKQMVQE 521 (1012)
Q Consensus 510 ~~l~~~~~~v~~ 521 (1012)
......++.+|.
T Consensus 86 ~~~~~~~~~~r~ 97 (114)
T cd03562 86 DAYEKVDEKTRK 97 (114)
T ss_pred HHHHhCCHHHHH
Confidence 444444455543
No 371
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=47.82 E-value=47 Score=32.00 Aligned_cols=95 Identities=13% Similarity=0.142 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHccc--cch-hhHHH-HHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhh--hHhHHHHHHhhc
Q 001791 859 QVGEILGTLIKTFKA--AFL-PFFDE-LSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKY--YETYLPFLLEAC 932 (1012)
Q Consensus 859 ~~~~~l~~l~~~~~~--~~~-~~~~~-ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~l~~~~l~~l 932 (1012)
++..++..++.+... .|+ -+++- +.|.+...-..++-...|..+++++|.++++-.+.+..+ -..++|.+++.+
T Consensus 119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 455666655544322 232 22222 455555443333445568899999999999987776654 457899999988
Q ss_pred cCCChhHHHHHHHHHHHHHhh
Q 001791 933 NDENQDVRQAAVYGLGVCAEF 953 (1012)
Q Consensus 933 ~~~~~~vr~~a~~~lg~l~~~ 953 (1012)
...+..-+-.|++.+|.+.-.
T Consensus 199 e~gSElSktvaifI~qkil~d 219 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGD 219 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhcc
Confidence 877777777788777776543
No 372
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.84 E-value=2.8e+02 Score=31.00 Aligned_cols=112 Identities=11% Similarity=0.178 Sum_probs=76.5
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhh-hhhhhH
Q 001791 384 AYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQ-FHPQVL 462 (1012)
Q Consensus 384 ~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~il 462 (1012)
+.+..+||..-...+..+..-- ..-+..+..|.+.+++.++.++..|+.+|..+++.++..+... .-..++
T Consensus 12 ~~l~~pDWa~NleIcD~IN~~~--------~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 12 ESLAEPDWALNLEICDLINSTE--------GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred ccccCccHHHHHHHHHHHhcCc--------cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455678855443333322211 1223678888999999999999999999999999998877422 234677
Q ss_pred HHHHhhcCCC-CChHHHHHHHHHHHHHhhcCCcccccCcHHHHH
Q 001791 463 PALAGAMDDF-QNPRVQAHAASAVLNFSENCTPEILTPYLDGIV 505 (1012)
Q Consensus 463 ~~l~~~l~~~-~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il 505 (1012)
+..+...... ....||..++..|..--..++.. ..|++..-
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~--~~~~~~~~ 125 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDTWQQAFCGP--DGYLPDYY 125 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHHHHHHccCC--CCcchhHH
Confidence 7788888774 46789999999998887777641 24544443
No 373
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=46.68 E-value=2e+02 Score=31.24 Aligned_cols=136 Identities=15% Similarity=0.148 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHccc-cchhhHHHHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhhhhHhhh-HhHHHHHHhhc
Q 001791 855 EVFDQVGEILGTLIKTFKA-AFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYY-ETYLPFLLEAC 932 (1012)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~-~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~~l~~l 932 (1012)
.+|-.+.+++.++...... .+... -+..++..-+....++....++++++.++++..+.....+ .-.+..++--.
T Consensus 197 ~vRve~~rlLEq~~~aeN~d~va~~---~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~ 273 (832)
T KOG3678|consen 197 SVRVEAARLLEQILVAENRDRVARI---GLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWC 273 (832)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHhhc---cchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeec
Confidence 4566677788777655432 22211 1223333333455667777889999999999777654322 12344444455
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCchHHHHH--HHHHHHHHhhcCCCCCCchhhhhHHHHHHHHHHHHh
Q 001791 933 NDENQDVRQAAVYGLGVCAEFGGSVVKPLVG--EALSRLNVVIRHPNALQPENLMAYDNAVSALGKICQ 999 (1012)
Q Consensus 933 ~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~--~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~~l~~ 999 (1012)
+-.+|.+-+.++-+||..+.+++...+..+- .+-.-|..+-.. .++-+|-.||-+++-+..
T Consensus 274 rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~s------kDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 274 RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFS------KDELLRLHACLAVAVLAT 336 (832)
T ss_pred ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcc------hHHHHHHHHHHHHhhhhh
Confidence 6677888888888999999998876554321 122233333222 245677788888777653
No 374
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.30 E-value=5.6e+02 Score=30.25 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhcc
Q 001791 229 LPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERA 308 (1012)
Q Consensus 229 ~~~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 308 (1012)
.-.++++|.....++=+.++..++..+..+....|..=...+..+++ -+ .+++..+...|--.|..+.. ..
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVN----Kl--GDpqnKiaskAsylL~~L~~---~H 372 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVN----KL--GDPQNKIASKASYLLEGLLA---KH 372 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH----hc--CCcchhhhhhHHHHHHHHHh---hC
Confidence 33466666666666677888999999998888887654444444444 33 34455566666556666554 25
Q ss_pred chh
Q 001791 309 PGM 311 (1012)
Q Consensus 309 ~~~ 311 (1012)
|++
T Consensus 373 PnM 375 (988)
T KOG2038|consen 373 PNM 375 (988)
T ss_pred Ccc
Confidence 544
No 375
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.91 E-value=4.7e+02 Score=30.18 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=52.7
Q ss_pred HHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCC
Q 001791 437 AAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1012)
Q Consensus 437 ~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~ 516 (1012)
.|..|...+.... +++ .+.+.++..++..+++ +...++..+|.++..+++.-.. ....-.++..+...++..+
T Consensus 304 vav~c~~~Ll~a~-pHF--N~~~kiv~l~vr~in~-~~~~~s~~~i~t~k~lf~~D~~---g~~sl~~Vr~i~~llK~rn 376 (704)
T KOG2153|consen 304 VAVQCACELLEAV-PHF--NLRQKIVKLVVRLIND-PGRPVSSGCIQTIKTLFENDNG---GSGSLAIVRIINSLLKTRN 376 (704)
T ss_pred HHHHHHHHHHHhh-hhc--cHHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhcCCCc---cchhHHHHHHHHHHhhhhc
Confidence 3444444444332 343 6788889888888888 6677889999999999875431 1222234444444555555
Q ss_pred hhHHHHHHHHHHHH
Q 001791 517 QMVQEGALTALASV 530 (1012)
Q Consensus 517 ~~v~~~a~~~l~~l 530 (1012)
..+...++.++.++
T Consensus 377 ~~v~~~~~~~~lsL 390 (704)
T KOG2153|consen 377 YEVLPDMITTFLSL 390 (704)
T ss_pred ccchhhHHHHHHhc
Confidence 55555555555444
No 376
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=45.57 E-value=95 Score=26.89 Aligned_cols=69 Identities=20% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHHHhhcc-CC-ChhHHHHHHHHHHHHHhhcCC---chHHHHHHHHHHHHHhhcCCCCCCchhhhhHHHHHHHHH
Q 001791 925 LPFLLEACN-DE-NQDVRQAAVYGLGVCAEFGGS---VVKPLVGEALSRLNVVIRHPNALQPENLMAYDNAVSALG 995 (1012)
Q Consensus 925 ~~~~l~~l~-~~-~~~vr~~a~~~lg~l~~~~~~---~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~~~~ 995 (1012)
+..++..|. +. +++....|+...-.|++..+. .+..+..+++..|..+=. ....+...+.|.||+-+++
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~--~f~~~~Fe~~R~~alval~ 78 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQN--KFDIENFEELRQNALVALV 78 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH-----TT--TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccc--cCCccCHHHHHHHHHHHHH
Confidence 344555565 33 688888999999999999987 788888888888887643 2334567888888866644
No 377
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.52 E-value=27 Score=21.33 Aligned_cols=14 Identities=36% Similarity=0.309 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHH
Q 001791 391 WQKHHAALIALAQI 404 (1012)
Q Consensus 391 ~~~r~aal~~l~~l 404 (1012)
|.+|+.+..+||.+
T Consensus 1 ~~vR~~aa~aLg~~ 14 (30)
T smart00567 1 PLVRHEAAFALGQL 14 (30)
T ss_pred CHHHHHHHHHHHHc
Confidence 67899999999987
No 378
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=45.51 E-value=6.4e+02 Score=30.64 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=80.9
Q ss_pred HHHHHHHHHcc----CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHH
Q 001791 57 LTLKLAHLLQR----SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELA 132 (1012)
Q Consensus 57 ~~~~l~~il~~----~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~ 132 (1012)
....+.+++.+ ..++.+|..=-..++.+..... +. ++ ..+...++..|.+ .++..|.-+...+..+.
T Consensus 78 ~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~~~---~~-~~----~~~lPG~~~~Lf~-~~~~~r~WA~~~~~~l~ 148 (727)
T PF12726_consen 78 LLLAIYECLCNPALLRDDEELRELFDAIFSSLQSKKP---LK-LP----KELLPGMTYFLFD-GNPERRRWAERWWQRLK 148 (727)
T ss_pred HHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhccCC---cc-cc----ccccchhhhhhhc-CCHHHHHHHHHHHHHcC
Confidence 45666777764 4456677766666666655431 11 11 2233455666665 68899999999999876
Q ss_pred hcc--cCCCCcc-----hHHHHHHHhhcCC--CHHHHHHHHHHHHHhhhhHhhh-ccccH-----HHHHHHHHHhhcCCC
Q 001791 133 SNI--LPENGWP-----ELLPFMFQCVSSD--SVKLQESAFLIFAQLSQYIGDT-LTPHL-----KHLHAVFLNCLTNSN 197 (1012)
Q Consensus 133 ~~~--~~~~~~~-----~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~~~~~~-~~~~~-----~~l~~~l~~~l~~~~ 197 (1012)
+.. +....|. ++...+... +.. ++.....-=..+..+.+.++++ +...+ ..++.++.+.|.+.
T Consensus 149 ~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~- 226 (727)
T PF12726_consen 149 RPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSN- 226 (727)
T ss_pred CCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcc-
Confidence 642 2223443 233333333 222 2221111112233333333322 11111 22777888888775
Q ss_pred ChHHHHHHHHHHHHHHHhhc
Q 001791 198 NPDVKIAALNAVINFIQCLT 217 (1012)
Q Consensus 198 ~~~vr~~a~~~l~~~~~~~~ 217 (1012)
........++++..+++..+
T Consensus 227 ~~~~l~~lL~~l~~lL~k~~ 246 (727)
T PF12726_consen 227 LSPPLPILLRCLSILLEKLG 246 (727)
T ss_pred cchhHHHHHHHHHHHHHhCH
Confidence 35666678889998888754
No 379
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=44.80 E-value=52 Score=22.91 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc
Q 001791 100 TQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN 134 (1012)
Q Consensus 100 ~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~ 134 (1012)
..+++|+.+++.|.. .++..|..+..+|+++.+.
T Consensus 4 ~~eYLKNvl~~fl~~-~~~~~~~~llpvi~tlL~f 37 (46)
T PF01465_consen 4 NLEYLKNVLLQFLES-REPSEREQLLPVIATLLKF 37 (46)
T ss_dssp HHHHHHHHHHHHHTT-SS---HHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHCC
Confidence 567999999999987 5678888888888888763
No 380
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.58 E-value=16 Score=21.86 Aligned_cols=14 Identities=50% Similarity=0.679 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhh
Q 001791 434 VRWAAINAIGQLST 447 (1012)
Q Consensus 434 vr~~a~~~l~~l~~ 447 (1012)
||..|.++||.+..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 78999999999875
No 381
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=42.56 E-value=1.2e+02 Score=27.23 Aligned_cols=80 Identities=11% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCccc--cc
Q 001791 421 SMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI--LT 498 (1012)
Q Consensus 421 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~--l~ 498 (1012)
..+++.|+-....++.+|..+|.. . ..-+.+.+.+++.+.+ ++-..|.....++..+++.+.... -.
T Consensus 11 ~~~L~~L~aS~qSi~kaa~fAlk~--~--------~~~edL~~cIle~le~-~~lN~R~nI~~fID~l~e~~~~~~~~~~ 79 (139)
T PF12243_consen 11 TQLLRRLNASQQSIQKAAQFALKN--R--------DMEEDLWSCILEQLEK-ENLNTRINIFYFIDSLCESSQKSKKYNY 79 (139)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHc--c--------ccHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHhcccccc
Confidence 344556666667777777777665 1 2345677777888887 677788999999999988664333 34
Q ss_pred CcHHHHHHHHHHH
Q 001791 499 PYLDGIVSKLLVL 511 (1012)
Q Consensus 499 ~~~~~il~~l~~~ 511 (1012)
+|...+-..|..+
T Consensus 80 ~Yv~~l~~dL~~I 92 (139)
T PF12243_consen 80 PYVSMLQRDLPRI 92 (139)
T ss_pred hhHHHHHHHHHHH
Confidence 6665554444333
No 382
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=42.19 E-value=4.8e+02 Score=28.24 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHc----cccchhhHHHHHHhHhhhhc-CCCCHHHHHHHHHHHHHHHHHhhhh----hHhhhHhHHHHHH
Q 001791 859 QVGEILGTLIKTF----KAAFLPFFDELSSYLTPMWG-KDKTAEERRIAICIFDDVAEQCREA----ALKYYETYLPFLL 929 (1012)
Q Consensus 859 ~~~~~l~~l~~~~----~~~~~~~~~~ll~~l~~~l~-~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~~~~l~~~~l 929 (1012)
.+..++..+.+.. .....-.+..++|.++.++- -+..+.+|..+...+..+++.+... ....+...+..++
T Consensus 230 ~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfv 309 (373)
T PF14911_consen 230 SVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFV 309 (373)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHH
Confidence 3455555665552 12222334445566655442 2335556777777777777766521 1112222222222
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh
Q 001791 930 EACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVV 972 (1012)
Q Consensus 930 ~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~ 972 (1012)
+ +--..--..-+..|..++...++.+.+.+|.+-+.+.+.
T Consensus 310 q---k~l~~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~ 349 (373)
T PF14911_consen 310 Q---KYLAHYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDS 349 (373)
T ss_pred H---HHhhhhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 1 111122244455677777777776666666666665553
No 383
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=42.17 E-value=1.5e+02 Score=33.06 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=72.7
Q ss_pred chHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhh--ccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcC-
Q 001791 142 PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT--LTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTS- 218 (1012)
Q Consensus 142 ~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~- 218 (1012)
..++..+.+++.+.+...+..+..+++.+.-...+. +.+....=+..++...+|+ ...|+...++.+.++...-..
T Consensus 472 ~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~kn 550 (743)
T COG5369 472 KSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKN 550 (743)
T ss_pred hhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccc
Confidence 457778888888877788888888888776554432 2222222245666677887 899999999999998763222
Q ss_pred cchHhHHHhhHH--HHHHHHHHHHhcCChHHHHHHHHHHHHHHcc
Q 001791 219 SADRDRFQDLLP--LMMRTLTESLNNGNEATAQEALELLIELAGT 261 (1012)
Q Consensus 219 ~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~L~~l~~~ 261 (1012)
+...+.+....| .+.+.+.......+|-.....+..|..++..
T Consensus 551 Ekskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~ 595 (743)
T COG5369 551 EKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAAC 595 (743)
T ss_pred cccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhc
Confidence 111222222222 3556666666555665555556666655543
No 384
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.05 E-value=2e+02 Score=32.08 Aligned_cols=94 Identities=21% Similarity=0.124 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhhH--hhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhh
Q 001791 501 LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYY--DAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMA 578 (1012)
Q Consensus 501 ~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~--~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~ 578 (1012)
....+..|.+-+.+.+..+...|+..|..++..||..|-..+ ..+++-+.....+. ..+..+|.+++..|-....+
T Consensus 36 ~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~--~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 36 PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNK--PRDLKVREKILELIDTWQQA 113 (470)
T ss_pred cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccC--CcchhHHHHHHHHHHHHHHH
Confidence 347788888888888888899999999999999998765322 34555555554432 15677999999999888888
Q ss_pred hCh-hhhhhhHHHHHHHHH
Q 001791 579 VGK-DKFRDDAKQVMEVLM 596 (1012)
Q Consensus 579 ~~~-~~~~~~~~~i~~~l~ 596 (1012)
++. +...|.+..++..+.
T Consensus 114 f~~~~~~~~~~~~~y~~l~ 132 (470)
T KOG1087|consen 114 FCGPDGYLPDYYQIYDELR 132 (470)
T ss_pred ccCCCCcchhHHHHHHHHH
Confidence 774 444444444544443
No 385
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.19 E-value=4.8e+02 Score=27.40 Aligned_cols=111 Identities=17% Similarity=0.160 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh-hhHHHHHhhcCCCC-ChHHHHHHHHHHHHHhhcCC
Q 001791 416 LEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP-QVLPALAGAMDDFQ-NPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 416 l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~il~~l~~~l~~~~-~~~v~~~a~~al~~l~~~~~ 493 (1012)
++.++....+.. .+|.|...++.+++-++-..+++- ...++ ..-...++.++-+| ...|+..||+.+.+++....
T Consensus 330 ~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~pdhs-a~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 330 LDKIITLALRHS--DDPLVIQEVMAIISILCLRSPDHS-AKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred hHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcCcchH-HHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 344454444433 468888889999988887766543 22222 23333445554323 45689999999999987664
Q ss_pred cccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 001791 494 PEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASV 530 (1012)
Q Consensus 494 ~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l 530 (1012)
. .-.+.+..=++.|+..-...++..+..+-.++-.+
T Consensus 407 ~-~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 407 E-NRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred h-ccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 2 23466666667777666666666665555555444
No 386
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=39.12 E-value=4.4e+02 Score=26.90 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHcc----ccchhh
Q 001791 803 LDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFK----AAFLPF 878 (1012)
Q Consensus 803 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~----~~~~~~ 878 (1012)
+..+.+..+.+.++.+|.... ....++.+...+..+++.+- ..+...
T Consensus 89 ls~~~i~~ig~~l~~~L~~~r-----------------------------HrGAfe~~~~~f~~lc~~l~~~~~~~l~~L 139 (255)
T PF10350_consen 89 LSPDQIEKIGELLIEQLLEIR-----------------------------HRGAFESVYPGFTALCRRLWSSNNPELSEL 139 (255)
T ss_pred CCHHHHHHHHHHHHHHHHhcc-----------------------------cccHHHHHHHHHHHHHHHHhcCCCchHHHh
Confidence 577888888888888776531 11234456666666666554 222222
Q ss_pred HHHHHHhHhhhhcCC-C---CHHHHHHHHHH-HHHHHHHhhhhhHhhhHhHHHHHHhhccCCCh--------hHHHHHHH
Q 001791 879 FDELSSYLTPMWGKD-K---TAEERRIAICI-FDDVAEQCREAALKYYETYLPFLLEACNDENQ--------DVRQAAVY 945 (1012)
Q Consensus 879 ~~~ll~~l~~~l~~~-~---~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~--------~vr~~a~~ 945 (1012)
-...+..++..+... . ....|..++.. +..++...+....+.++..+..+++..+.+.. .-+-+|+-
T Consensus 140 P~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlN 219 (255)
T PF10350_consen 140 PEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALN 219 (255)
T ss_pred HHHHHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHH
Confidence 222444444444322 1 13344444443 33444443333235667777777766554322 46666777
Q ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhhc
Q 001791 946 GLGVCAEFGG--SVVKPLVGEALSRLNVVIR 974 (1012)
Q Consensus 946 ~lg~l~~~~~--~~~~~~~~~il~~L~~~l~ 974 (1012)
+|..+..-.. +.+.+|+...+..=.+.+.
T Consensus 220 iLr~if~ds~L~~~~~~yi~~~l~lai~~f~ 250 (255)
T PF10350_consen 220 ILRAIFRDSKLSEDVSPYIEDALILAIKGFS 250 (255)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHhCC
Confidence 7777766553 4566666666555544443
No 387
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=39.05 E-value=1.2e+02 Score=26.48 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccC
Q 001791 420 LSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTP 499 (1012)
Q Consensus 420 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~ 499 (1012)
+...++.|......++....+++.. ..+...++..+.+.+.. ..+.-+...+..+..++.++.......
T Consensus 2 f~~~L~~L~~s~~~I~~lt~~~~~~----------~~~a~~Iv~~i~~~~~~-~~~~~kL~~LYlindIl~n~~~~~~~~ 70 (121)
T smart00582 2 FEQKLESLNNSQESIQTLTKWAIEH----------ASHAKEIVELWEKYIKK-APPPRKLPLLYLLDSIVQNSKRKYGSE 70 (121)
T ss_pred hHHHHHhccccHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHh-CCccceehhHHhHHHHHHHHhhccHHH
Q ss_pred cHHHHHHHHHHHhhcCChh----HHHHHHHHHH
Q 001791 500 YLDGIVSKLLVLLQNGKQM----VQEGALTALA 528 (1012)
Q Consensus 500 ~~~~il~~l~~~l~~~~~~----v~~~a~~~l~ 528 (1012)
|...+.+.+...+...... .|......+.
T Consensus 71 f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~ 103 (121)
T smart00582 71 FGDELGPVFQDALRDVLGAANDETKKKIRRLLN 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
No 388
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=38.81 E-value=1.6e+02 Score=28.81 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=45.8
Q ss_pred HHHHHHHhhCCCC-hhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhch
Q 001791 378 ASEQLPAYLAAPE-WQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGP 451 (1012)
Q Consensus 378 ~~~~l~~~l~~~~-~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~ 451 (1012)
..+.+.++..|++ |..|.+.+..+. .... ...+.+...+...+.|++-.|+.+..|+|..+++.-++
T Consensus 116 ~~~~l~~W~~s~~~W~rR~ai~~~l~-~~~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 116 FEPVMDEWSTDENFWLRRTAILHQLK-YKEK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH-HHHc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 3566777888876 665555543332 2221 23345667777888999999999999999999876443
No 389
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=37.37 E-value=3.5e+02 Score=25.34 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=49.8
Q ss_pred HhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhh-cchHhHHHHHHH
Q 001791 48 LCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQL-ESAKSISKKLCD 126 (1012)
Q Consensus 48 ~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~-~~~~~vr~~~~~ 126 (1012)
.+.+ +|... +.++.-. +-.++....-+..+|++ |..++++. .++.|.. -++..||..+..
T Consensus 40 ~l~~-~p~aL-~~~L~sv-~W~~~~e~~e~~~lL~~---------W~~i~~~~-------aLeLL~~~f~~~~VR~yAV~ 100 (166)
T cd00870 40 YLTN-NKKAL-TKFLKSV-NWSDEQEVKQALELMPK---------WAKIDIED-------ALELLSPYFTNPVVRKYAVS 100 (166)
T ss_pred HHhh-CcHHH-HHHhhhC-CCCCHHHHHHHHHHHhc---------CCCCCHHH-------HHHHcCccCCCHHHHHHHHH
Confidence 3444 67654 4444332 44445544455556665 98877653 3444543 256789998888
Q ss_pred HHHHHHhcccCCCCcchHHHHHHHhhcCC
Q 001791 127 TVSELASNILPENGWPELLPFMFQCVSSD 155 (1012)
Q Consensus 127 ~l~~i~~~~~~~~~~~~ll~~l~~~~~~~ 155 (1012)
++..+. .+..-..+|+|+|.++-+
T Consensus 101 ~L~~~s-----d~eL~~yL~QLVQaLKyE 124 (166)
T cd00870 101 RLKLAS-----DEELLLYLLQLVQALKYE 124 (166)
T ss_pred HHHhCC-----HHHHHHHHHHHHHHHHhc
Confidence 877532 246667788888877654
No 390
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=37.13 E-value=9.9e+02 Score=30.46 Aligned_cols=69 Identities=13% Similarity=0.163 Sum_probs=45.0
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 419 VLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 419 i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
+++..+...-..++.|....+.++..+...... . .-....++...+-.+.+ ++..||..|...|..+-.
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~-~-~~~~~~LL~L~Lfklg~-~~~eIR~~A~qLL~~Le~ 572 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREY-P-PCPFWELLNLVLFKLGD-ESSEIRSKAMQLLRALEE 572 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCC-C-CCCHHHhHHHHHHhhcC-CcHHHHHHHHHHHHHHHH
Confidence 454444444445677777777666665432211 1 12355788888888888 899999999998887653
No 391
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=37.04 E-value=7.7e+02 Score=29.18 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=45.3
Q ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChHH----HHHHHHHHH
Q 001791 181 HLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEAT----AQEALELLI 256 (1012)
Q Consensus 181 ~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~----~~~~~~~L~ 256 (1012)
++..+.+++ ..+ +.++-..+++.+..+--.-.........-.+....+..++-++...+... ...+...|.
T Consensus 311 ~L~~i~~lL----~~~-~~~~~~~~v~lL~~l~~~~~~~~~~~~~L~l~~~~V~yFF~~l~~~~~~~~~~~~~~~~~lL~ 385 (696)
T PF14838_consen 311 HLPDIAQLL----LHS-DPEVAHAAVKLLDLLPLPEKAPLSPSLLLKLSRALVKYFFLCLHEKDVSGKQEGLKRCCQLLS 385 (696)
T ss_pred HHHHHHHHH----cCC-ChhHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 344444444 343 66776666665554322110112233333344556666676665543322 335666666
Q ss_pred HHHccchHHHHHhHHHHHHH
Q 001791 257 ELAGTEPRFLRRQLVDVVGS 276 (1012)
Q Consensus 257 ~l~~~~~~~~~~~~~~i~~~ 276 (1012)
.++...+....-.+..+++.
T Consensus 386 ~l~~~s~~a~~~vLr~LlE~ 405 (696)
T PF14838_consen 386 RLCSYSPAARKAVLRELLEG 405 (696)
T ss_pred HHHccCchHHHHHHHHHHHH
Confidence 66666555444445555554
No 392
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=35.85 E-value=6.6e+02 Score=28.01 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhh----CCCC--ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 001791 415 NLEQVLSMVLNS----FRDP--HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNF 488 (1012)
Q Consensus 415 ~l~~i~~~l~~~----l~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l 488 (1012)
.+.++++.++.+ +.++ +..||+.-...+-.+++..+.-+ ...-.+++..+-+.-+-.....+-.+.||++++.
T Consensus 259 Li~~L~pvlleRs~~Lfp~~~y~~eV~rvlss~ll~lfk~~PsLv-v~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy 337 (459)
T PF14764_consen 259 LICQLLPVLLERSDALFPIPQYQAEVRRVLSSQLLALFKRHPSLV-VELSKEILEFLGSASNIHSKEELFTHLVWAIGEY 337 (459)
T ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHhCcHHH-HHhHHHHHHHhcccccccchhHHHHHHHHHHhcc
Confidence 344555555553 4444 46777777777777776655444 3444555555543322213556778899999998
Q ss_pred hhc
Q 001791 489 SEN 491 (1012)
Q Consensus 489 ~~~ 491 (1012)
...
T Consensus 338 ~s~ 340 (459)
T PF14764_consen 338 LSV 340 (459)
T ss_pred ccc
Confidence 754
No 393
>PLN03205 ATR interacting protein; Provisional
Probab=35.54 E-value=5.8e+02 Score=27.30 Aligned_cols=135 Identities=15% Similarity=0.187 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhh-------hccccHHHHHHHHHHhhc
Q 001791 122 KKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGD-------TLTPHLKHLHAVFLNCLT 194 (1012)
Q Consensus 122 ~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~-------~~~~~~~~l~~~l~~~l~ 194 (1012)
.++.+....+.+.....-....++..|+++..-.+..+...++++|..+.+++-. .+...+..++.+..+...
T Consensus 302 ekVshlYs~~tKiS~G~V~lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv 381 (652)
T PLN03205 302 EKVYHLYSAVTKISYGFVNLKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIAS 381 (652)
T ss_pred HHHHHHHHHHHHhhCCeeeHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHh
Confidence 4455555555553322225578899999999888888888999999988887532 123356777776666433
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 001791 195 NSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNN-GNEATAQEALELLIEL 258 (1012)
Q Consensus 195 ~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~~~~~L~~l 258 (1012)
..+...||..|+..+.-++..-......+.|... .+++.+.++++- .-..++..++.+|--+
T Consensus 382 ~~TEE~VrLEAvSIMnVIlmssna~~eREkFG~~--~VfESiaQLLkkEaGl~VqKealhLLfLL 444 (652)
T PLN03205 382 IRTEEDVKLEALSIMNIIVMSTDAYTARESFVSK--EVFESISLLLRKEGGLHVRKEAIHLFYLL 444 (652)
T ss_pred ccchhheeeehhhhhHHhhhccchhHHHHHhcch--HHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 3337899999998888777543211123333321 344555555542 2334666666555433
No 394
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=35.19 E-value=5e+02 Score=26.46 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHhhcH-------H-HHHHhHHHHHHHHHhhC-CCCChhHHHHHHHHHHHhhhhhc----hhHHhhh
Q 001791 391 WQKHHAALIALAQIAEGCA-------K-VMVKNLEQVLSMVLNSF-RDPHPRVRWAAINAIGQLSTDLG----PDLQNQF 457 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~-------~-~~~~~l~~i~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~ 457 (1012)
|+.-..+...++.++...+ . .-...+..+-..++..| +-.|.-.-..+...+..+++.+. +.+ ...
T Consensus 61 Wr~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l-~~L 139 (255)
T PF10350_consen 61 WRSIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPEL-SEL 139 (255)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchH-HHh
Confidence 5555555556666654321 0 01123333434444333 22344444555556666666553 222 233
Q ss_pred hhhhHHHHHhhcCCCC-Ch---HHHHHH--HHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCCh--------hHHHHH
Q 001791 458 HPQVLPALAGAMDDFQ-NP---RVQAHA--ASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQ--------MVQEGA 523 (1012)
Q Consensus 458 ~~~il~~l~~~l~~~~-~~---~v~~~a--~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~--------~v~~~a 523 (1012)
....+..+++.+.+ . .. ..|..| -.++..++..-+.. -.+.++..+..|++..+.+.. .-+..|
T Consensus 140 P~~WL~~~l~~i~~-~~~~~~~iTRRSAGLP~~i~aiL~ae~~~-~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHA 217 (255)
T PF10350_consen 140 PEEWLDELLEAIES-KGQQKLSITRRSAGLPFLILAILSAEPSN-SRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHA 217 (255)
T ss_pred HHHHHHHHHHHHhc-ccccccccccccCcHHHHHHHHHhcCCCc-chhHHHHHHHHHHHHhcCCcccccccccchHHHHH
Confidence 44555555666555 2 11 234333 23445555544322 127788888888888766532 467778
Q ss_pred HHHHHHHHHH--hHhhhHhhHhhhhHHHHH
Q 001791 524 LTALASVADS--SQEHFQKYYDAVMPFLKA 551 (1012)
Q Consensus 524 ~~~l~~l~~~--~~~~~~~~~~~il~~l~~ 551 (1012)
+.++..+... .++...+|+.+.+..-++
T Consensus 218 lNiLr~if~ds~L~~~~~~yi~~~l~lai~ 247 (255)
T PF10350_consen 218 LNILRAIFRDSKLSEDVSPYIEDALILAIK 247 (255)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 8888777653 335556666655443333
No 395
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=34.82 E-value=3.8e+02 Score=24.91 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=28.8
Q ss_pred HHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc
Q 001791 76 MAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASN 134 (1012)
Q Consensus 76 ~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~ 134 (1012)
++..+|.+.++.+ +..+.+|.+.+++.+....+..+ .....+++.+++.
T Consensus 37 LG~~IL~~~fk~h---------~~~r~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~ 85 (158)
T PF14676_consen 37 LGIQILLELFKVH---------EMIRSEILEQLLNRIVTKSSSPS-SQYIDLLSELVRK 85 (158)
T ss_dssp HHHHHHHHHHHH----------GGGHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHhcCccch-hHHHHHHHHHHHH
Confidence 8888999988776 34555666666666654222222 3456677777664
No 396
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=33.43 E-value=1.3e+03 Score=30.63 Aligned_cols=121 Identities=9% Similarity=0.097 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHH
Q 001791 361 CLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAIN 440 (1012)
Q Consensus 361 ~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~ 440 (1012)
++..-...+ +.+++.++.....++.+++..++..|...+..+........ -..++..++..+.+.+..-..+|+.
T Consensus 421 ~f~~~~~vL--~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~---qqeVv~~Lvthi~sg~~~ev~~aL~ 495 (1426)
T PF14631_consen 421 TFKGHSEVL--KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC---QQEVVGALVTHIGSGNSQEVDAALD 495 (1426)
T ss_dssp HHHHHHHHH--TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH---HHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHhhhHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh---HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 333333444 47888999999999999999999999999998887765422 2345555554443334433468899
Q ss_pred HHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHh
Q 001791 441 AIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1012)
Q Consensus 441 ~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1012)
+|..++...+..+ . .+..++..++..+.+...+.+| .....+..+.
T Consensus 496 vL~~L~~~~~~~l-~-~fa~~l~giLD~l~~Ls~~qiR-~lf~il~~La 541 (1426)
T PF14631_consen 496 VLCELAEKNPSEL-Q-PFATFLKGILDYLDNLSLQQIR-KLFDILCTLA 541 (1426)
T ss_dssp HHHHHHHH-HHHH-H-HTHHHHHGGGGGGGG--HHHHH-HHHHHHHHHH
T ss_pred HHHHHHhccHHHH-H-HHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHh
Confidence 9988887655544 2 3344555566666552223333 3455555544
No 397
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=33.35 E-value=6.5e+02 Score=27.17 Aligned_cols=168 Identities=16% Similarity=0.185 Sum_probs=90.7
Q ss_pred HHHHHHHHHHhhcchHhHHHHHHHHHHHHHh--cccCCCCcchHHHHHHHhhcCCC--------------HHHHHHHHHH
Q 001791 103 SLKSMLLQSIQLESAKSISKKLCDTVSELAS--NILPENGWPELLPFMFQCVSSDS--------------VKLQESAFLI 166 (1012)
Q Consensus 103 ~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~--~~~~~~~~~~ll~~l~~~~~~~~--------------~~~r~~al~~ 166 (1012)
...+.+++.|..|.++.|-..+..-+..... ..+-......+...|.+.+.+.. .+.....+.+
T Consensus 141 ~~~~~il~~L~~e~dWeV~s~VL~hLp~qL~Nk~Lf~~~~I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~ 220 (356)
T PF03542_consen 141 EWFSVILQCLEHETDWEVYSYVLVHLPSQLSNKALFLGADIDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPV 220 (356)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhhhhHHhccCcHHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHH
Confidence 4556788888888888765543333332221 11111124444555555443211 2334445556
Q ss_pred HHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHHHHhcCChH
Q 001791 167 FAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEA 246 (1012)
Q Consensus 167 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 246 (1012)
|..+..+-..--...-.+++..+..++.+. . -...+.+|.-++..+ +..+...+|.++..+.+... ...
T Consensus 221 Ls~LisYh~~~~k~~qd~iV~~l~~GL~s~-~---a~~CI~aLtic~~Em-----P~s~~k~L~~iL~kLs~i~t--t~~ 289 (356)
T PF03542_consen 221 LSALISYHSHFSKQEQDEIVRALESGLGSK-T---AKPCIHALTICCYEM-----PDSMKKLLPSILLKLSKIST--TPN 289 (356)
T ss_pred HHHHHHHHHhcCHhHHHHHHHHHHHHhccC-c---HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHhhcc--chh
Confidence 666655432111224577888888887653 2 233455555555443 45566777777777665433 445
Q ss_pred HHHHHHHHHHHHHccc----hHHHHHhHHHHHHHHHHhh
Q 001791 247 TAQEALELLIELAGTE----PRFLRRQLVDVVGSMLQIA 281 (1012)
Q Consensus 247 ~~~~~~~~L~~l~~~~----~~~~~~~~~~i~~~l~~~~ 281 (1012)
.....++.|..+++.- ..+..+....++..+++..
T Consensus 290 ~Ai~ILEFLs~L~~lP~~ly~nF~~~~y~~VF~I~l~Y~ 328 (356)
T PF03542_consen 290 MAIHILEFLSSLSRLPNHLYSNFTEDEYKRVFAIALPYT 328 (356)
T ss_pred hHHHHHHHHHHHhhCcHHHhcCCCHHHHHHHHHHHhhcc
Confidence 6667888888877533 2223445556666666554
No 398
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=32.55 E-value=7.9e+02 Score=32.35 Aligned_cols=240 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHhhhccchhhhcchhhHHHHHH
Q 001791 245 EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFA 324 (1012)
Q Consensus 245 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 324 (1012)
++.......+...-...|+......+...++.++......|..+.++-..--++..+.- +.........|+...-+.
T Consensus 1346 ~d~~~~s~~~~~k~~d~yS~qal~~lae~l~~lld~~~~sDEk~kv~~lls~v~~~ItP---ylk~~sa~nap~~~a~~~ 1422 (1749)
T KOG3613|consen 1346 PDAKSNSVYLLQKKLDVYSVQALFLLAERLADLLDVVYRSDEKDKVVPLLSIVNYNITP---YLKNHSARNAPLFRAGLQ 1422 (1749)
T ss_pred hhhhhhhhHHhhcCCccchHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHhhhH---HhccccccccchHHHHHH
Q ss_pred HHHHhhccCCCCccccCCCCCCccccCCcchhhHHH-----HHHHHHHHcCCCcchHHHHHHHHHhhC---------CCC
Q 001791 325 ILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQE-----CLDRLAIALGGNTIVPVASEQLPAYLA---------APE 390 (1012)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~-----~l~~l~~~~~~~~~~~~~~~~l~~~l~---------~~~ 390 (1012)
.+..+-.+.-....|..+.-|---+...-....... +++.+..+- +.++..++..+.-.-. +.+
T Consensus 1423 LLasLSgy~y~rkaWrKe~~eLF~D~~fFqmd~s~l~~W~~Iid~lmt~d--~t~f~DLm~ri~~s~s~s~~lftSrd~e 1500 (1749)
T KOG3613|consen 1423 LLASLSGYQYTRKAWRKEFLELFLDNSFFQMDLSCLRHWSSIIDHLMTHD--KTIFNDLMTRISSSQSGSLNLFTSRDQE 1500 (1749)
T ss_pred HHHHHhcCchhHHHHHHHHHHHhcCcchheeeHHHHHHHHHHHHHHHhCC--chHHHHHHHHhhcccccceeeeecchHH
Q ss_pred hhHHHHHHHHHHHHHhhcH-HHHHHhHHHHHHHHHhhCC-CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhh
Q 001791 391 WQKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFR-DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGA 468 (1012)
Q Consensus 391 ~~~r~aal~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~ 468 (1012)
...|...+.-++.+.-+.+ +.+..+++.|.+.+...|+ ++.+.||.+.+.++..+.-.+.++=...+.+.++.-+...
T Consensus 1501 ~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~Sp~hL~~LWPImv~ELv~v 1580 (1749)
T KOG3613|consen 1501 LEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRISPDHLTSLWPIMVYELVQV 1580 (1749)
T ss_pred HHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhcCHhhcccchHHHHHHHHHH
Q ss_pred cCCCCChHH-------------------HHHHHHHHHHHh
Q 001791 469 MDDFQNPRV-------------------QAHAASAVLNFS 489 (1012)
Q Consensus 469 l~~~~~~~v-------------------~~~a~~al~~l~ 489 (1012)
+.....+.. ...||..|.-++
T Consensus 1581 f~q~eq~l~~~~~~~~s~~~~~qtw~~l~L~ACKlLDll~ 1620 (1749)
T KOG3613|consen 1581 FLQLEQDLQVGEANGQSTAYSSQTWLMLYLEACKLLDLLL 1620 (1749)
T ss_pred HHHHHhhhccccccccccccCchHHHHHHHHHHHHHHHHH
No 399
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=32.32 E-value=2e+02 Score=33.31 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHH
Q 001791 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVR 435 (1012)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr 435 (1012)
..|.++++.+.+..|...+...+-|.+.+...+...-.-.-+-...|...+.....+..|+..++..|...-. ..|.|-
T Consensus 360 SLasK~mde~mkl~Gm~YLh~tLkPvi~kI~eekK~cEiDP~Kv~~g~~lE~n~~nLr~y~~~lf~ait~S~~-~CP~vm 438 (800)
T KOG2059|consen 360 SLASKMMDEFMKLAGMHYLHVTLKPVIDKIFEEKKPCEIDPSKVKVGDNLETNLENLRVYVGRLFEAITKSST-RCPTVM 438 (800)
T ss_pred chHHHHHHHHHHHhchHHHHHHhHHHHHHHHhhcCCcccChhhhhhhhHHHhhHHHHHHHHHHHHHHHHhccc-cChHHH
Confidence 4688999999998886555566667777766553322222222223333444444555666666666655432 334443
Q ss_pred HHHHH
Q 001791 436 WAAIN 440 (1012)
Q Consensus 436 ~~a~~ 440 (1012)
..++.
T Consensus 439 ~~~F~ 443 (800)
T KOG2059|consen 439 CQIFY 443 (800)
T ss_pred HHHHH
Confidence 33333
No 400
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.31 E-value=7.3e+02 Score=27.46 Aligned_cols=96 Identities=17% Similarity=0.134 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhhhHhhhccccHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHHHHHHHHH
Q 001791 159 LQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTE 238 (1012)
Q Consensus 159 ~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 238 (1012)
.-..|+..+-.+++...-++.-.-..++.++.++|.-+ +.......++.|..+.-+.++... .-. ..++.-+..
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~--M~~---~~iveKL~k 352 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIV--MEQ---NGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHH--HHh---ccHHHHHHH
Confidence 34456777777777766555555678889999999876 777777777777777665433211 111 145555666
Q ss_pred HHhcCChHHHHHHHHHHHHHHc
Q 001791 239 SLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 239 ~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
......++.+...+.++-.+.-
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSF 374 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSF 374 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccc
Confidence 6667889999999888887753
No 401
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=32.25 E-value=2.6e+02 Score=26.87 Aligned_cols=94 Identities=14% Similarity=0.018 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCchh
Q 001791 904 CIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPEN 983 (1012)
Q Consensus 904 ~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~ 983 (1012)
+++-..++..+..+.+ ..+.+.++......+..-|- ..+..++...+..-+..+..++.+|..+.... +.+
T Consensus 72 ~~LK~flr~LpepLi~--~~~~~~~~~~~~~~~~~~~i---~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s----~~N 142 (186)
T cd04377 72 SVLKQWLRELPEPLMT--FELYENFLRAMELEEKQERV---RALYSVLEQLPRANLNTLERLIFHLVRVALQE----EVN 142 (186)
T ss_pred HHHHHHHHcCCCccCC--HHHHHHHHHHHhcCCHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcc----CCC
Confidence 3444445555554433 23344455444444444332 34455666766655556677888888776543 357
Q ss_pred hhhHHHHHHHHHHHHhHccCCCC
Q 001791 984 LMAYDNAVSALGKICQFHRDSID 1006 (1012)
Q Consensus 984 ~~~~~na~~~~~~l~~~~p~~~~ 1006 (1012)
.....|-+.|+|--+...|+..+
T Consensus 143 kM~~~nLaivf~P~ll~~~~~~~ 165 (186)
T cd04377 143 RMSANALAIVFAPCILRCPDTAD 165 (186)
T ss_pred CCCHHHHHHHHhhHhcCCCCCCC
Confidence 88899999999998888887653
No 402
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=31.71 E-value=1.9e+02 Score=26.15 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=45.8
Q ss_pred HHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCccc
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1012)
Q Consensus 417 ~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~ 496 (1012)
+.+-..+...|.++++.|+..|+.||-.+-. + ++...-..+...++| ...|. .|..+.-.-+...
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~---~-----~l~pY~d~L~~Lldd---~~frd----eL~~f~~~~~~~~ 80 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD---P-----YLTPYKDNLENLLDD---KTFRD----ELTTFNLSDESSV 80 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H-----HHHhHHHHHHHHcCc---chHHH----HHHhhcccCCcCC
Confidence 4456677788999999999999999877543 2 222333444455545 34444 3444432222111
Q ss_pred c-cCcHHHHHHHHHHHh
Q 001791 497 L-TPYLDGIVSKLLVLL 512 (1012)
Q Consensus 497 l-~~~~~~il~~l~~~l 512 (1012)
+ ..+-+.++|.++.++
T Consensus 81 I~~ehR~~l~pvvlRIL 97 (141)
T PF07539_consen 81 IEEEHRPELMPVVLRIL 97 (141)
T ss_pred CCHHHHhHHHHHHHHHH
Confidence 2 234455666666554
No 403
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.53 E-value=8.8e+02 Score=27.87 Aligned_cols=103 Identities=12% Similarity=0.004 Sum_probs=69.2
Q ss_pred hhCCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchh-HHhhhhhhhHH
Q 001791 385 YLAAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPD-LQNQFHPQVLP 463 (1012)
Q Consensus 385 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~il~ 463 (1012)
...|-+...|--+...++--....++.+.... .+...-.+|+|.+..||......+-.++...+.. ....+.+.+..
T Consensus 283 Ry~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 283 RYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred hccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 44566778888888888876666555332222 4556667889999999999999999988765421 11245555666
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHhh
Q 001791 464 ALAGAMDDFQNPRVQAHAASAVLNFSE 490 (1012)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~al~~l~~ 490 (1012)
.+++.+.- ...-||..+...+..+-.
T Consensus 361 rILE~~r~-D~d~VRi~sik~l~~lr~ 386 (740)
T COG5537 361 RILEFLRT-DSDCVRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHhh-ccchhhHHHHHHHHHHHH
Confidence 66665543 223389888888887754
No 404
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=30.17 E-value=2e+02 Score=24.35 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhhchhHHh--hhhhhhHHHHHhhc-CCCCChHHHHHHHHHHHHHhhcCC
Q 001791 435 RWAAINAIGQLSTDLGPDLQN--QFHPQVLPALAGAM-DDFQNPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 435 r~~a~~~l~~l~~~~~~~~~~--~~~~~il~~l~~~l-~~~~~~~v~~~a~~al~~l~~~~~ 493 (1012)
|......|+.++-..+. ... ... .-+|.++++. -|..+|.+|+.|..++..+++...
T Consensus 3 K~~lvrlianl~~~~~~-~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKE-VQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHH-HHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 44455666666543221 101 112 2366666642 233799999999999999998765
No 405
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=30.13 E-value=4.2e+02 Score=23.97 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=53.0
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhh---h
Q 001791 462 LPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEH---F 538 (1012)
Q Consensus 462 l~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~---~ 538 (1012)
+..+++.|+- +...++.+|..||.. . ..-+.+.+.++..+++.+...|...+..+..++..+... .
T Consensus 10 F~~~L~~L~a-S~qSi~kaa~fAlk~--~--------~~~edL~~cIle~le~~~lN~R~nI~~fID~l~e~~~~~~~~~ 78 (139)
T PF12243_consen 10 FTQLLRRLNA-SQQSIQKAAQFALKN--R--------DMEEDLWSCILEQLEKENLNTRINIFYFIDSLCESSQKSKKYN 78 (139)
T ss_pred HHHHHHHcch-hHHHHHHHHHHHHHc--c--------ccHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHhccccc
Confidence 3445566665 555677777777766 2 233567788888888888889999999999988766532 3
Q ss_pred HhhHhhhhHHHHHH
Q 001791 539 QKYYDAVMPFLKAI 552 (1012)
Q Consensus 539 ~~~~~~il~~l~~~ 552 (1012)
.+|...+-.-|..+
T Consensus 79 ~~Yv~~l~~dL~~I 92 (139)
T PF12243_consen 79 YPYVSMLQRDLPRI 92 (139)
T ss_pred chhHHHHHHHHHHH
Confidence 45655554444333
No 406
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=30.06 E-value=8.6e+02 Score=27.60 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhhcCchHH--------HHHHHHHHccCCCHHHHHHHHHHHHHhccc--CCCCc
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSL--------TLKLAHLLQRSPHPEARAMAAVLLRKLLTR--DDSFL 92 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~--------~~~l~~il~~~~~~~vr~~a~~~L~~~i~~--~~~~~ 92 (1012)
....+.+.++++++..+..|.++|.++.. +|.+. +..|..++.++..-..+.+-...|+....- ++..-
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs 162 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS 162 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence 44567888899999999889999988877 66432 345555554432211222222223222221 12223
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhcccCCCCc---chHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 001791 93 WPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGW---PELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (1012)
Q Consensus 93 w~~l~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~---~~ll~~l~~~~~~~~~~~r~~al~~l~~ 169 (1012)
|..++......+.... ..+. .+..+-..+...+..++........| ...+..++.-++.++......|+..+..
T Consensus 163 W~~~~~~fV~~~a~~V--~~~~-~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 163 WESVSNDFVVSMASYV--NAKR-EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeecccHHHHHHHHHH--hhhh-hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 8887776555444333 2222 23334444455555554322211233 2235566666666665554457777777
Q ss_pred hhhhHhhh
Q 001791 170 LSQYIGDT 177 (1012)
Q Consensus 170 l~~~~~~~ 177 (1012)
+....+++
T Consensus 240 l~~~a~~~ 247 (713)
T KOG2999|consen 240 LFRKAPDD 247 (713)
T ss_pred HHhhCChH
Confidence 66655544
No 407
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=30.01 E-value=4e+02 Score=25.22 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhcCchHHHHHHHHHHcc--CCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHHhhc
Q 001791 38 QRSEAELLFNLCKQQDPDSLTLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE 115 (1012)
Q Consensus 38 ~r~~A~~~L~~~~~~~p~~~~~~l~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l~~~ 115 (1012)
....+...|..+..-+|.. -++++.. ..++.||+.|...|++. +.+........|+|+|.-|
T Consensus 54 ~~~~~l~~Ll~W~pi~p~~----ALell~~~y~~~~~Vr~yAvr~L~~~------------~~e~l~~YlpQLVQaLryd 117 (175)
T cd00871 54 ENSPDLKYLLYWAPVSPVQ----ALSLFTPQYPGHPLVLQYAVRVLESY------------PVETVFFYIPQIVQALRYD 117 (175)
T ss_pred hHHHHHHHHcCCCCCCHHH----HHHHhCcccCCCHHHHHHHHHHHHhC------------CHHHHHHHHHHHHHHHhcc
Confidence 3334445555665544433 2333432 44688999999998883 4566666677888888876
Q ss_pred chH
Q 001791 116 SAK 118 (1012)
Q Consensus 116 ~~~ 118 (1012)
...
T Consensus 118 ~~~ 120 (175)
T cd00871 118 KMG 120 (175)
T ss_pred ccc
Confidence 433
No 408
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=29.48 E-value=9.5e+02 Score=27.90 Aligned_cols=155 Identities=12% Similarity=0.159 Sum_probs=84.2
Q ss_pred HHHHHHhhc-chHhHHHHHHHHHHHHHhc-------ccCCCCcchHHHHHHH----hhcCCCHHHHHHHHHHHHHhhhhH
Q 001791 107 MLLQSIQLE-SAKSISKKLCDTVSELASN-------ILPENGWPELLPFMFQ----CVSSDSVKLQESAFLIFAQLSQYI 174 (1012)
Q Consensus 107 ~ll~~l~~~-~~~~vr~~~~~~l~~i~~~-------~~~~~~~~~ll~~l~~----~~~~~~~~~r~~al~~l~~l~~~~ 174 (1012)
.+-+.+... ....++.+.|+++..+... +.....|.+.+..|.. ++.. +.....++-....+.-..
T Consensus 133 ~l~~~f~~~h~~~~ik~A~~~~l~~lLlPvA~~~~~evn~P~W~~~v~~i~~~~~~~~~K--~khw~~afPL~t~lLCvS 210 (552)
T PF14222_consen 133 SLAKFFLEAHKKSDIKHAYCEVLVELLLPVAATATAEVNHPKWKEAVETIYPRAAKMMSK--PKHWNVAFPLVTTLLCVS 210 (552)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHHhC--cchhhhHHHHHHHHHhcC
Confidence 333334333 3455999999998887432 2222478776655543 3333 333334555444443333
Q ss_pred -hhhccccHH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHhh---cCcchHhHHHhhHHHHHHHHHHHHh----cCCh
Q 001791 175 -GDTLTPHLK-HLHAVFLNCLTNSNNPDVKIAALNAVINFIQCL---TSSADRDRFQDLLPLMMRTLTESLN----NGNE 245 (1012)
Q Consensus 175 -~~~~~~~~~-~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~---~~~~~~~~~~~~~~~ll~~l~~~l~----~~~~ 245 (1012)
.+.|..++. .++..+..-+++. ..|..++.|+..++-.+ ...+........+..+++.++..-+ ..|.
T Consensus 211 ~~e~F~~~W~~~~i~~~~~klKdk---~~r~~~l~~l~RLlWvYL~~r~~Es~n~T~krL~~i~~~lfp~~kk~~i~~D~ 287 (552)
T PF14222_consen 211 PKEFFLSNWLPSLIESLISKLKDK---ETRPVALECLSRLLWVYLVYRCPESLNNTTKRLDSIFKLLFPKGKKGWIPRDP 287 (552)
T ss_pred cHHHHHHHHHHHHHHHHHhhcCCh---hhhHHHHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHHHccCCCCcccCCCh
Confidence 344445566 4666665555653 78889999999876432 1222333334455566666553211 1233
Q ss_pred HHHHHHHHHHHHHHccchHHH
Q 001791 246 ATAQEALELLIELAGTEPRFL 266 (1012)
Q Consensus 246 ~~~~~~~~~L~~l~~~~~~~~ 266 (1012)
......++++.-++..++++.
T Consensus 288 ~~~~~lv~ii~~I~~~~~df~ 308 (552)
T PF14222_consen 288 EPLNPLVQIIRFIGYKHLDFA 308 (552)
T ss_pred hhhhhHHHHHHhHhhhCcchH
Confidence 455556677776766666553
No 409
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=29.00 E-value=4e+02 Score=23.43 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHHHcCCCcchHHHHHHHHHhh---CCCChhHHHHHHHHHHHHHhhcHHHHHHhHHHHHHHHHhh--CC--
Q 001791 356 SVGQECLDRLAIALGGNTIVPVASEQLPAYL---AAPEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNS--FR-- 428 (1012)
Q Consensus 356 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~~~r~aal~~l~~l~~~~~~~~~~~l~~i~~~l~~~--l~-- 428 (1012)
......+..++...-...-...++..+...+ ...+|+...=|+..+..+..+.++.+...+..-+..|..+ ++
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~ 97 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYV 97 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---B
T ss_pred CcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeecc
Confidence 3445666777765432355667888888887 5688999999999999998877765554444333333222 11
Q ss_pred CC-----ChhHHHHHHHHHHHhh
Q 001791 429 DP-----HPRVRWAAINAIGQLS 446 (1012)
Q Consensus 429 d~-----~~~vr~~a~~~l~~l~ 446 (1012)
|+ ...||..|-.++.-+.
T Consensus 98 d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 98 DPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp BTTSTBHHHHHHHHHHHHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHhC
Confidence 11 2347777776665543
No 410
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=28.82 E-value=1.1e+02 Score=21.32 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHhc
Q 001791 101 QSSLKSMLLQSIQLESAKSISKKLCDTVSELASN 134 (1012)
Q Consensus 101 ~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~ 134 (1012)
.+++|+.+++.|.. .+.. |..+..+++++.+.
T Consensus 4 ~eYLKNVll~fl~~-~e~~-r~~ll~vi~tlL~f 35 (46)
T smart00755 4 FEYLKNVLLQFLTL-RESE-RETLLKVISTVLQL 35 (46)
T ss_pred HHHHHHHHHHHhcc-Ccch-HHHHHHHHHHHhCC
Confidence 57899999999987 4444 88888888887763
No 411
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.70 E-value=2.4e+02 Score=22.86 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=21.5
Q ss_pred hCCChhHHHHHHHHh---cCCC---hHHHHHHHHHHHHhhh
Q 001791 17 LGPDSAPFETLISHL---MSTS---NEQRSEAELLFNLCKQ 51 (1012)
Q Consensus 17 ~~~~~~~l~~ll~~~---~s~d---~~~r~~A~~~L~~~~~ 51 (1012)
+.|+.+.+.++++-+ .+.+ .++|++|++....+.+
T Consensus 8 ~~d~~e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~ 48 (93)
T COG1698 8 MNDSEEKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN 48 (93)
T ss_pred hhhhHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC
Confidence 445666555554443 3222 4789999988777665
No 412
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=27.92 E-value=4.1e+02 Score=25.25 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHh
Q 001791 429 DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFS 489 (1012)
Q Consensus 429 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~ 489 (1012)
..+..+...++.|+..+...-......-..+..+..+..++.+ ++..+|..++..|..+|
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s-~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS-PNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T-TSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4566778888888888776432111012356788899999988 89999999999888775
No 413
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=27.57 E-value=5.9e+02 Score=24.93 Aligned_cols=157 Identities=19% Similarity=0.155 Sum_probs=92.7
Q ss_pred CCChHHHHHHHHHHHHhhhcCchHHHHHHHHHHccCCCHHHHHHHHHHHHHhcccCCCCcccCCCHHHHHHHHHHHHHHH
Q 001791 33 STSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSI 112 (1012)
Q Consensus 33 s~d~~~r~~A~~~L~~~~~~~p~~~~~~l~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~l~~~~~~~i~~~ll~~l 112 (1012)
-+.++.|+-|-..+..... .+......|+.-+-+++.-+.|.+|..+|....+ .++++..+.+.. .+
T Consensus 23 v~~P~~R~lak~~~~~~~~-~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~--------~~~~~~~~~~~~----~l 89 (208)
T cd07064 23 IKTPERRALSKPFLKESKL-PDKEELWELVLELWQQPEREYQYVAIDLLRKYKK--------FLTPEDLPLLEE----LI 89 (208)
T ss_pred CChHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHh--------cCCHHHHHHHHH----HH
Confidence 3566778777777776655 2222335555555555556899999998888533 234554443333 22
Q ss_pred hhcchHhHHHHHH-HHHHHHHhcccCCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhccccHHHHHHHHHH
Q 001791 113 QLESAKSISKKLC-DTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLN 191 (1012)
Q Consensus 113 ~~~~~~~vr~~~~-~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~ 191 (1012)
..-.+..+--.++ .+++.+.. .-+.+.+.+..+..+++.-.|..|+.+.-...+. .....+..++..
T Consensus 90 ~~~~~Wd~vD~~~~~i~g~~~~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~------~~~~~l~~~~~~ 157 (208)
T cd07064 90 TTKSWWDTVDSLAKVVGGILLA------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYKEK------TDTDLLFEIILA 157 (208)
T ss_pred cCCchHHHHHHHHHHHhHHHHh------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc------cCHHHHHHHHHH
Confidence 2222333333322 33343332 2345578888999999877777777653332222 134566667777
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHh
Q 001791 192 CLTNSNNPDVKIAALNAVINFIQC 215 (1012)
Q Consensus 192 ~l~~~~~~~vr~~a~~~l~~~~~~ 215 (1012)
.+.++ ..-|+++.-.+|..+...
T Consensus 158 ~~~d~-e~fI~KAiGW~LRe~~k~ 180 (208)
T cd07064 158 NLGSK-EFFIRKAIGWALREYSKT 180 (208)
T ss_pred hCCCh-HHHHHHHHHHHHHHHhcc
Confidence 77776 778888887888777764
No 414
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=27.40 E-value=2.8e+02 Score=26.49 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCc
Q 001791 902 AICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1012)
Q Consensus 902 ~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~ 981 (1012)
+.+++...++..+..+.|+ .+.+.+.+..+..+..-|..+ +..++...+..-...+..++.+|..+.... +
T Consensus 74 va~lLK~fLReLP~pLi~~--~~~~~~~~~~~~~~~~~r~~~---l~~li~~LP~~n~~~L~~L~~~L~~V~~~s----~ 144 (182)
T cd04381 74 VASLLKQYLRELPEPLLTK--ELMPRFEEACGRPTEAEREQE---LQRLLKELPECNRLLLAWLIVHMDHVIAQE----L 144 (182)
T ss_pred HHHHHHHHHHhCCCccCCH--HHHHHHHHHcCCCCHHHHHHH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHhC----c
Confidence 3445555556666555443 355556666666665555443 445677777655555667777887776543 3
Q ss_pred hhhhhHHHHHHHHHHHH
Q 001791 982 ENLMAYDNAVSALGKIC 998 (1012)
Q Consensus 982 ~~~~~~~na~~~~~~l~ 998 (1012)
.+.+...|-+.|+|=-+
T Consensus 145 ~NkM~~~NLAivfaP~l 161 (182)
T cd04381 145 ETKMNIQNISIVLSPTV 161 (182)
T ss_pred ccCCCHHHHHHHhCccc
Confidence 57888888888877533
No 415
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=26.97 E-value=1e+03 Score=27.53 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=47.3
Q ss_pred HHHHhHhhhhcCCCCHHHHHHHHHHHHHHHHHhhh-hhH-hhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcC
Q 001791 881 ELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCRE-AAL-KYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGG 955 (1012)
Q Consensus 881 ~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~-~~~-~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1012)
+++-.+...++..++...|...+..++.+.+..-+ ... +..+.+-..+-..|.|+++-+++.|..+.|.+++.++
T Consensus 479 qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~~FAe~T~ 555 (559)
T PF14868_consen 479 QVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFGQFAERTS 555 (559)
T ss_pred HHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccCC
Confidence 33333344443445555666666666666544322 222 2445555555566789999999999999999999875
No 416
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.38 E-value=8.7e+02 Score=26.43 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=42.4
Q ss_pred hhcCCCHHHHHHHHHHHHHhhhhHhhhcc------ccHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHhhc
Q 001791 151 CVSSDSVKLQESAFLIFAQLSQYIGDTLT------PHLKHLHAVFL-NCLTNSNNPDVKIAALNAVINFIQCLT 217 (1012)
Q Consensus 151 ~~~~~~~~~r~~al~~l~~l~~~~~~~~~------~~~~~l~~~l~-~~l~~~~~~~vr~~a~~~l~~~~~~~~ 217 (1012)
-++++.......++.+|..+....++.+. .+++.++..+. +++.+-.+..|+...++.|..+.-.++
T Consensus 53 KiqSPqe~EAl~altvLe~cmkncGekfH~evgkfrFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~lp 126 (594)
T KOG1086|consen 53 KIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKFRFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVSLP 126 (594)
T ss_pred hcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheecCc
Confidence 44555544445567777777766665432 25666666554 455554577888888888888766654
No 417
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=26.16 E-value=6.3e+02 Score=26.70 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHhHhhhHhhHh--hhhHHHHHHH
Q 001791 499 PYLDGIVSKLLVLLQ-NGKQMVQEGALTALASVADSSQEHFQKYYD--AVMPFLKAIL 553 (1012)
Q Consensus 499 ~~~~~il~~l~~~l~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~--~il~~l~~~l 553 (1012)
..++.+...|...+. ..+..++...+..|..-...+......|+. .-++.|.+..
T Consensus 151 tliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~ 208 (312)
T PF04869_consen 151 TLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFS 208 (312)
T ss_dssp EHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHh
Confidence 455666665555444 445677777777776666556666666664 3566666653
No 418
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=25.91 E-value=1.1e+03 Score=27.51 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHHhhcCC
Q 001791 474 NPRVQAHAASAVLNFSENCT 493 (1012)
Q Consensus 474 ~~~v~~~a~~al~~l~~~~~ 493 (1012)
.+..|.+|+.=|+.++....
T Consensus 361 ~~~~R~~A~~YlaSflaRAk 380 (563)
T PF05327_consen 361 PPVTRQAAAAYLASFLARAK 380 (563)
T ss_dssp -HHHHHHHHHHHHHHHHHBT
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 34567777777777766543
No 419
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=25.63 E-value=1.3e+02 Score=23.47 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHh
Q 001791 144 LLPFMFQCVSSDSVKLQESAFLIFAQLSQYIG 175 (1012)
Q Consensus 144 ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~ 175 (1012)
.++.++.+..|..+..|..|+.+|+.++....
T Consensus 40 Ti~El~~L~RSsv~~QR~~al~~L~~Il~~~~ 71 (73)
T PF08620_consen 40 TIQELFHLSRSSVPSQRCIALQTLGRILYRAG 71 (73)
T ss_pred CHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh
Confidence 37888899999999999999999999887543
No 420
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.61 E-value=2.7e+02 Score=27.29 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCc
Q 001791 902 AICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1012)
Q Consensus 902 ~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~ 981 (1012)
+.+++-..++..+..+.|+ .+.+.++.+.....+.-+......+-.++...+..-...+..++.+|..+... ++
T Consensus 76 vA~lLK~fLReLPePLip~--~~y~~~~~~~~~~~~~~~~~~~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~----s~ 149 (207)
T cd04379 76 ITGVLKDYLRELPEPLITP--QLYEMVLEALAVALPNDVQTNTHLTLSIIDCLPLSAKATLLLLLDHLSLVLSN----SE 149 (207)
T ss_pred HHHHHHHHHHhCCCccCCH--HHHHHHHHHHhccChhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc----cc
Confidence 3445555666666655442 33444444443322221222223344566666655455566777777777643 34
Q ss_pred hhhhhHHHHHHHHHHHHhHccCC
Q 001791 982 ENLMAYDNAVSALGKICQFHRDS 1004 (1012)
Q Consensus 982 ~~~~~~~na~~~~~~l~~~~p~~ 1004 (1012)
.+.....|-+.++|--+...++.
T Consensus 150 ~NkMt~~NLAivf~P~Ll~~~~~ 172 (207)
T cd04379 150 RNKMTPQNLAVCFGPVLMFCSQE 172 (207)
T ss_pred ccCCChHHhHHhhccccCCCCcc
Confidence 57889999999998877665554
No 421
>PF14961 BROMI: Broad-minded protein
Probab=25.28 E-value=2e+02 Score=35.73 Aligned_cols=72 Identities=7% Similarity=0.138 Sum_probs=57.1
Q ss_pred HHHHHHHhhcchHhHHHHHHHHHHHHHhccc-CCCCcchHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhh
Q 001791 106 SMLLQSIQLESAKSISKKLCDTVSELASNIL-PENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDT 177 (1012)
Q Consensus 106 ~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~-~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~ 177 (1012)
+.+++.|......++|..+.+.+..+--.+. ....|+.+-..|...+.++++.....++..........+-.
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~ 236 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLN 236 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchh
Confidence 4566667666788999998888887643332 33699999999999999999999999999988888765544
No 422
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.60 E-value=5.7e+02 Score=23.74 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhcCC-CChHHHHHHHHHHHHHHHhhcCcchHhHHHhhHHH-HHHHHHHHHhcCChHHHHHHHHHHHHHHc
Q 001791 183 KHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPL-MMRTLTESLNNGNEATAQEALELLIELAG 260 (1012)
Q Consensus 183 ~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~~~~~L~~l~~ 260 (1012)
+.++.-+....+.. .+..+...++..|-.++..- ...+...-.. -++.+...++..+++++..++.++..+..
T Consensus 57 ~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S-----~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 57 DSFIKKIASYVNSSAMDASILQRSLAILESIVLNS-----PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHHHHHccccccchHHHHHHHHHHHHHhCC-----HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34444444444443 26788888988888888752 2212111111 13445556667888999999998888876
Q ss_pred cchH
Q 001791 261 TEPR 264 (1012)
Q Consensus 261 ~~~~ 264 (1012)
+.++
T Consensus 132 kA~~ 135 (160)
T PF11841_consen 132 KADD 135 (160)
T ss_pred cCCh
Confidence 5543
No 423
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=23.98 E-value=2.4e+02 Score=23.80 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhcHHHHH--HhHHHHHHHHHhh--CCCCChhHHHHHHHHHHHhhhhhc
Q 001791 394 HHAALIALAQIAEGCAKVMV--KNLEQVLSMVLNS--FRDPHPRVRWAAINAIGQLSTDLG 450 (1012)
Q Consensus 394 r~aal~~l~~l~~~~~~~~~--~~l~~i~~~l~~~--l~d~~~~vr~~a~~~l~~l~~~~~ 450 (1012)
|...+..++.++...+.... ..+. -+|.+++. +.+.+|.+|+.|.+++..+++.-.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~-Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~ 62 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELG-GIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP 62 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcC-ChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH
Confidence 34455666776665553211 1111 25666654 356799999999999999998653
No 424
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=23.41 E-value=1.6e+03 Score=28.64 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHccchHHHHHhHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHH
Q 001791 249 QEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAE 303 (1012)
Q Consensus 249 ~~~~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 303 (1012)
+.++-+|.+++-.....+..+++.++...+-.+ ++..+-|+..|-++|..+..
T Consensus 934 qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~l--DH~~~~V~e~a~~lL~~Li~ 986 (1120)
T PF14228_consen 934 QLALIFLVDLAVEPDEDLREHLPLLLHVIFVLL--DHYTPLVQEQARELLVNLIH 986 (1120)
T ss_pred HHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcc--cCCChHHHHHHHHHHHHHHH
Confidence 457778888886667778888998888777665 34567777777777766654
No 425
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=23.39 E-value=5.1e+02 Score=22.75 Aligned_cols=67 Identities=10% Similarity=0.083 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhhhHhhhHhHHHHHHhhc---cCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhh
Q 001791 905 IFDDVAEQCREAALKYYETYLPFLLEAC---NDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVI 973 (1012)
Q Consensus 905 ~l~~l~~~~~~~~~~~~~~l~~~~l~~l---~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l 973 (1012)
.+.+++..+... .....++..+.++| ...++.+...|+..|--|+.++++.|...+..-...+..+-
T Consensus 23 ~l~eIa~~t~~~--~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 23 LLAEIAQLTYNS--KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp HHHHHHHHTTSC--HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGG
T ss_pred HHHHHHHHHhcc--ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcc
Confidence 344555544332 34677899999999 56778999999999999999999888877765444444443
No 426
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.31 E-value=3.3e+02 Score=26.63 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCc
Q 001791 902 AICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1012)
Q Consensus 902 ~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~ 981 (1012)
+.+++...++..+..+.+ .++.+.++...+..+.+.|-. .+..++...+..-...+..++.+|..+.... +
T Consensus 89 va~lLK~fLReLPePLi~--~~~y~~~i~~~~~~~~~~ri~---~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s----~ 159 (203)
T cd04374 89 ITSALKTYLRNLPEPLMT--YELHNDFINAAKSENLESRVN---AIHSLVHKLPEKNREMLELLIKHLTNVSDHS----K 159 (203)
T ss_pred HHHHHHHHHHcCCCCcCC--HHHHHHHHHHHhCCCHHHHHH---HHHHHHHHCCHHHHHHHHHHHHHHHHHHHhc----c
Confidence 444555556666655544 245555566666666555543 4556677777655555667777777776543 3
Q ss_pred hhhhhHHHHHHHHHHHHhHc
Q 001791 982 ENLMAYDNAVSALGKICQFH 1001 (1012)
Q Consensus 982 ~~~~~~~na~~~~~~l~~~~ 1001 (1012)
.+.....|-+.|+|--+...
T Consensus 160 ~NkM~~~NLAivf~P~Llr~ 179 (203)
T cd04374 160 KNLMTVSNLGVVFGPTLLRP 179 (203)
T ss_pred cccCCHHHHHHHhccccCCC
Confidence 57888889999988766443
No 427
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.12 E-value=3.5e+02 Score=26.24 Aligned_cols=93 Identities=8% Similarity=-0.078 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCc
Q 001791 902 AICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQP 981 (1012)
Q Consensus 902 ~~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~ 981 (1012)
+.+++...++..+..+.+ ..+.+.+++..+..+...| ...+..++...+..-...+..++.+|..+.... +
T Consensus 75 va~lLK~flReLPePLi~--~~~y~~~~~~~~~~~~~~~---~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s----~ 145 (195)
T cd04384 75 VSSLCKLYFRELPNPLLT--YQLYEKFSEAVSAASDEER---LEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYC----S 145 (195)
T ss_pred HHHHHHHHHHhCCCccCC--HHHHHHHHHHHhcCCHHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhh----h
Confidence 334455555555554433 2334444444444444444 335666777777655556677788888877543 3
Q ss_pred hhhhhHHHHHHHHHHHHhHccC
Q 001791 982 ENLMAYDNAVSALGKICQFHRD 1003 (1012)
Q Consensus 982 ~~~~~~~na~~~~~~l~~~~p~ 1003 (1012)
.+.+...|-+.|+|--+...|.
T Consensus 146 ~NkM~~~NLAivf~P~L~~~~~ 167 (195)
T cd04384 146 ITNMHAKNLAIVWAPNLLRSKQ 167 (195)
T ss_pred hcCCCHHHhhHhhhhhcCCCCc
Confidence 5788999999999987766654
No 428
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=22.49 E-value=2.9e+02 Score=27.32 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcc-cccCc
Q 001791 422 MVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPE-ILTPY 500 (1012)
Q Consensus 422 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~-~l~~~ 500 (1012)
.+.+.|.+.++.+|..|+..+..+...-........+..+...|+-++=..+.|.+|...+.-|+.++..+... ....|
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~~~~~~f 83 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSEKAALLF 83 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcChHHHHHH
Q ss_pred HHHHHHHHHH
Q 001791 501 LDGIVSKLLV 510 (1012)
Q Consensus 501 ~~~il~~l~~ 510 (1012)
+...+..+..
T Consensus 84 ~~~f~~tm~r 93 (217)
T PF05997_consen 84 LKAFWETMRR 93 (217)
T ss_pred HHHHHHHHHH
No 429
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=22.42 E-value=1.2e+03 Score=26.56 Aligned_cols=213 Identities=8% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHhhcHHHHHHhHHHHHHHHHhhCCCC-------ChhHHHHHHHHHHHhhhhhchhHHhhhhhhhHHHHHhhcC----
Q 001791 402 AQIAEGCAKVMVKNLEQVLSMVLNSFRDP-------HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMD---- 470 (1012)
Q Consensus 402 ~~l~~~~~~~~~~~l~~i~~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~---- 470 (1012)
|.+.......+...+.+.+..+...++++ +..|.+.+..-+..-....+.- +.|...++..|-.+|.
T Consensus 18 gdLFsV~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~si--E~YaAaLVDlLd~cL~hnl~ 95 (851)
T KOG3723|consen 18 GDLFSVDDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESI--EKYAAALVDLLDSCLEHNLR 95 (851)
T ss_pred cccccCChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchH--HHHHHHHHHHHHHHHhccCc
Q ss_pred -----CCCChHHHHHHHHHHHHHhhcCCc-----------------------ccccCcHHHHHHHHHHHhhcCChhHHHH
Q 001791 471 -----DFQNPRVQAHAASAVLNFSENCTP-----------------------EILTPYLDGIVSKLLVLLQNGKQMVQEG 522 (1012)
Q Consensus 471 -----~~~~~~v~~~a~~al~~l~~~~~~-----------------------~~l~~~~~~il~~l~~~l~~~~~~v~~~ 522 (1012)
| .++.-..-|...+..++-+..+ ..+..|+.--.-....+|.+....+.+.
T Consensus 96 p~g~kd-ed~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~s 174 (851)
T KOG3723|consen 96 PFGKKD-EDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKS 174 (851)
T ss_pred cCCCCC-CCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHH
Q ss_pred HHH-------HHHHHHHHhHhhhHhhHhhhhHHHHHHHhhccccccchhhHHHHHHHHHHHhhhChhhhhhhHHHHHHHH
Q 001791 523 ALT-------ALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVL 595 (1012)
Q Consensus 523 a~~-------~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l 595 (1012)
.++ .++.+....++.+.|+++.+++.|.+. .+....++..+-.+...-..+.+..+++.+.-.+
T Consensus 175 iLSgn~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~---------~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l 245 (851)
T KOG3723|consen 175 ILSGNTMLLRVLSAVYEKQPQPINPHLPELLALLSQL---------EPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHL 245 (851)
T ss_pred HhccchHHHHHHHHHHhcCCCccCcccHHHHHHhcCC---------CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q ss_pred HHHhcCCCCCCCchhHHHHHHHHHHHHHhcCCcccchhhh
Q 001791 596 MSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVV 635 (1012)
Q Consensus 596 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i 635 (1012)
.. .......+..+..++..-......+++.+
T Consensus 246 ~d---------s~~~~i~~~Ilk~ia~~~pv~l~~~~E~l 276 (851)
T KOG3723|consen 246 KD---------STHNDIILNILKEIAVYEPVALNSFLEML 276 (851)
T ss_pred cc---------ccchhHHHHHHHHHHhcCccchhhHHHHH
No 430
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=22.30 E-value=5.7e+02 Score=22.92 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=56.9
Q ss_pred CChhHHHHHHHHHHHHHhhcHHHHHHhHH--HHHHHHHhhCCCCChhHHHHHHHHHHHhhhhhchhHHhhhhh--hhHHH
Q 001791 389 PEWQKHHAALIALAQIAEGCAKVMVKNLE--QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHP--QVLPA 464 (1012)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~il~~ 464 (1012)
.+...++-..--|..++..... ..++. +++..++.++..++..+..-+.-.|.++|-.- -..+++. .=+|.
T Consensus 29 t~~eakeqv~ANLANFAYDP~N--ys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~---~n~~~I~ea~g~pl 103 (173)
T KOG4646|consen 29 TNIEAKEQVTANLANFAYDPIN--YSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK---TNAKFIREALGLPL 103 (173)
T ss_pred ccHHHHHHHHHHHHhhccCcch--HHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh---HHHHHHHHhcCCce
Confidence 4444444444444555443322 13333 46788899999999888877666666655322 1122222 23566
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHhhc
Q 001791 465 LAGAMDDFQNPRVQAHAASAVLNFSEN 491 (1012)
Q Consensus 465 l~~~l~~~~~~~v~~~a~~al~~l~~~ 491 (1012)
++..+++ +...+-..|+.++.-+...
T Consensus 104 ii~~lss-p~e~tv~sa~~~l~~l~~~ 129 (173)
T KOG4646|consen 104 IIFVLSS-PPEITVHSAALFLQLLEFG 129 (173)
T ss_pred EEeecCC-ChHHHHHHHHHHHHHhcCc
Confidence 6778888 6666777777777776543
No 431
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=21.47 E-value=7.3e+02 Score=23.79 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=52.7
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHHhhcCCcccccCcHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhhhHhh
Q 001791 463 PALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKY 541 (1012)
Q Consensus 463 ~~l~~~l~~~~~~~v~~~a~~al~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~ 541 (1012)
+.+..-..+ ++.-+|..++.++...... ..+.+.+++.+...+.+.+..++..+-.+|..+....++...+|
T Consensus 108 ~~~~~w~~s-~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKS-ENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhC-CcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 566666777 7888888888887776654 24667778888888888888899888888888877655443333
No 432
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=9.9e+02 Score=25.27 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=72.1
Q ss_pred HHHHHhhCCCC-ChhHHHHHHHHHHHhhhhhchh-----HH-hhhhhhhHHHHHhhcCCCCChHHHHHHHHHHHHHhhcC
Q 001791 420 LSMVLNSFRDP-HPRVRWAAINAIGQLSTDLGPD-----LQ-NQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC 492 (1012)
Q Consensus 420 ~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~-----~~-~~~~~~il~~l~~~l~~~~~~~v~~~a~~al~~l~~~~ 492 (1012)
+..+++++.|. ...+|..+-.+++.+..-.+.+ +. ..-.+.++........ +|.|...++.++..++-..
T Consensus 285 l~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~---~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 285 LDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSD---DPLVIQEVMAIISILCLRS 361 (461)
T ss_pred HHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCC---ChHHHHHHHHHHHHHHhcC
Confidence 34556666663 3445544444444443322322 21 1234555555555554 4889899999998887655
Q ss_pred CcccccCcHH-HHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHhHhhhHhhHhhhhHHHHHH
Q 001791 493 TPEILTPYLD-GIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAI 552 (1012)
Q Consensus 493 ~~~~l~~~~~-~il~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~ 552 (1012)
+ +.-..+++ ..-...++.++... ..++..+...+-+++....+.-.+++..=+..|+..
T Consensus 362 p-dhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~ 423 (461)
T KOG4199|consen 362 P-DHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRT 423 (461)
T ss_pred c-chHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHH
Confidence 4 22222222 23334455554433 468899999999999887765556665544444444
No 433
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=21.11 E-value=4.5e+02 Score=26.97 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHHHHhhcH--HHHHHhHH-HHHHHHHhhCCCC---ChhHHHHHHHHHHHhhhhhchhH-Hhhhhhhh
Q 001791 389 PEWQKHHAALIALAQIAEGCA--KVMVKNLE-QVLSMVLNSFRDP---HPRVRWAAINAIGQLSTDLGPDL-QNQFHPQV 461 (1012)
Q Consensus 389 ~~~~~r~aal~~l~~l~~~~~--~~~~~~l~-~i~~~l~~~l~d~---~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~i 461 (1012)
.....+..++..+..+..+.. ..+..+.. .++..+....... +..+|.++..++-+++-.....- ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 455566666667766655422 34445555 5666666665554 89999999999888876653322 12233346
Q ss_pred HHHHHhhcCC-CCChHHHHHHHHHHHHHh
Q 001791 462 LPALAGAMDD-FQNPRVQAHAASAVLNFS 489 (1012)
Q Consensus 462 l~~l~~~l~~-~~~~~v~~~a~~al~~l~ 489 (1012)
+..+.+.+.. ..++++..+++.+++.++
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 6666663322 246888899999999998
No 434
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=21.01 E-value=3.9e+02 Score=25.63 Aligned_cols=99 Identities=10% Similarity=0.015 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhhhHhhhHhHHHHHHhhccCCChhHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhhcCCCCCCch
Q 001791 903 ICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNALQPE 982 (1012)
Q Consensus 903 ~~~l~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~ 982 (1012)
.+++-..++..+..+.+ ..+.+.+++..+..+..-+ +..+..++...+..-...+..++.+|.++... ++.
T Consensus 71 a~lLK~fLReLPePLi~--~~~y~~~~~~~~~~~~~~~---i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~----s~~ 141 (186)
T cd04406 71 ASVFKQWLRDLPNPLMT--FELYEEFLRAMGLQERRET---VRGVYSVIDQLSRTHLNTLERLIFHLVRIALQ----EET 141 (186)
T ss_pred HHHHHHHHHhCCCccCC--HHHHHHHHHHHhcccHHHH---HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhC----CCc
Confidence 34455555555555443 1233444444433332222 33445566666654444566777778776643 346
Q ss_pred hhhhHHHHHHHHHHHHhHccCC-CChhhh
Q 001791 983 NLMAYDNAVSALGKICQFHRDS-IDAAQV 1010 (1012)
Q Consensus 983 ~~~~~~na~~~~~~l~~~~p~~-~~~~~~ 1010 (1012)
+.+...|-+.|+|--+...|+. -|++++
T Consensus 142 NkM~~~NLAivf~P~ll~~p~~~d~~~~~ 170 (186)
T cd04406 142 NRMSANALAIVFAPCILRCPDTTDPLQSV 170 (186)
T ss_pred cCCChHHHHHHhcccccCCCCCCCHHHHH
Confidence 8899999999999977777764 465543
No 435
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=20.12 E-value=3.1e+02 Score=25.69 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcccCCCCc-----chHHHHHHHhhcCCCHHHHHHHHHHHHHhhhhHhhhc
Q 001791 124 LCDTVSELASNILPENGW-----PELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTL 178 (1012)
Q Consensus 124 ~~~~l~~i~~~~~~~~~~-----~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~ 178 (1012)
++.++..+....-+ +.| ..++|.+..++++........|+..+..+...+.+.+
T Consensus 46 lvD~L~vl~~~~~~-~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~~I 104 (164)
T PF13925_consen 46 LVDVLSVLNQSLKP-EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFGPVI 104 (164)
T ss_pred HHHHHHHHHHhcCc-CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666532223 456 6899999999999999999999999999988866653
Done!