Query 001791
Match_columns 1012
No_of_seqs 302 out of 2878
Neff 11.0
Searched_HMMs 29240
Date Tue Mar 26 15:51:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001791.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1089-1092//hhsearch_pdb/001791hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 524.6 76.1 763 16-927 4-800 (852)
2 2bpt_A Importin beta-1 subunit 1.0 1 1 509.4 79.6 800 19-953 1-858 (861)
3 1qgr_A Protein (importin beta 1.0 1 1 489.3 75.5 811 23-955 2-874 (876)
4 1u6g_C TIP120 protein, CAND1; 1.0 1 1 468.6 61.3 900 17-1011 1-1106(1230)
5 1wa5_C Importin alpha RE-expor 1.0 1 1 405.4 71.2 598 19-644 2-693 (960)
6 2x1g_F Cadmus; transport prote 1.0 1 1 392.6 52.5 607 19-645 4-745 (971)
7 2x19_B Importin-13; nuclear tr 1.0 1 1 391.1 62.9 712 19-800 21-849 (963)
8 4fdd_A Transportin-1; heat rep 1.0 1 1 365.4 64.2 754 58-971 12-803 (852)
9 3m1i_C Exportin-1; heat repeat 1.0 1 1 363.5 71.9 720 18-799 12-880 (1049)
10 1qgr_A Protein (importin beta 1.0 1 1 357.3 71.2 785 68-1003 12-875 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=524.60 Aligned_cols=763 Identities=19% Similarity=0.232 Sum_probs=566.8
Q ss_pred HHCCCHH---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8099906---89999999339993887999999988651292489999999980--699977999899999975035888
Q 001791 16 ILGPDSA---PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQ--RSPHPEARAMAAVLLRKLLTRDDS 90 (1012)
Q Consensus 16 ~~~~d~~---~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~--~~~~~~vr~~a~~~L~~~i~~~~~ 90 (1012)
-|.++++ ++.++|+.++|||+++|++|+++|+++++ +|++ ...|.+++. ++.++.+|++|++.||+.+.++
T Consensus 4 ~w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~~-~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-- 79 (852)
T 4fdd_A 4 EWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPDF-NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH-- 79 (852)
T ss_dssp -CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHHH-HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS--
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC--
T ss_conf 889984239999999998739498999999999999870-9988-999999985668898679999999999989874--
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 74557898789999999989995152276999999999999842169999202799999950299877789999999993
Q 001791 91 FLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQL 170 (1012)
Q Consensus 91 ~~w~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l 170 (1012)
|..++++.+..||..+++.+.+ +++.+|+.++.+++.+++.+.+ +.||++++.+.+.++++++..|++++.+++.+
T Consensus 80 --w~~~~~~~~~~ik~~ll~~l~~-~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i 155 (852)
T 4fdd_A 80 --FQNFPNGVTDFIKSECLNNIGD-SSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKI 155 (852)
T ss_dssp --GGGCCHHHHHHHHHHHHTTTTC-SSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHH
T ss_pred --CCCCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf --4779999999999999998749-9899999999999999986481-35689999999987099989999999999999
Q ss_pred HHHHHHHCC-----CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 666752200-----009999999998536999958999999999999983069112867974699999999999836996
Q 001791 171 SQYIGDTLT-----PHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNE 245 (1012)
Q Consensus 171 ~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~ 245 (1012)
++..++.+. ..+..+++.+.+++.++ +..+|..|++++..++... ...+...++.+++.+...++++++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~-----~~~~~~~~~~~l~~l~~~~~d~~~ 229 (852)
T 4fdd_A 156 CEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISR-----TQALMLHIDSFIENLFALAGDEEP 229 (852)
T ss_dssp HHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTT-----CHHHHTSHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHCHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9985787563431332999999999985679-7899999999999998646-----387998899999999987179977
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHH
Q ss_conf 78999999999987211398999499999999996426875357899999999999872101531220143469999999
Q 001791 246 ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAI 325 (1012)
Q Consensus 246 ~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 325 (1012)
++|..++++|..+++.++..+.+|+..+++.++.... +.++.+|..++++|..+++.. ...+.+.+++..++|.
T Consensus 230 ~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~--~~~~~vr~~a~e~l~~l~~~~----~~~~~~~~~~~~l~p~ 303 (852)
T 4fdd_A 230 EVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ--DQDENVALEACEFWLTLAEQP----ICKDVLVRHLPKLIPV 303 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHTTST----THHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHH
T ss_conf 8999999999999985779899889999999998706--996899999999999986036----5798878889889999
Q ss_pred HHHHHCCCCCCCCCCCCC-CCCCCC----CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 999625679984545789-987554----677611069999999997729974347788779884279896589999999
Q 001791 326 LMSMLLDIEDDPLWHSAE-TEDEDA----GESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKHHAALIA 400 (1012)
Q Consensus 326 l~~~l~~~~~~~~~~~~~-~~~ed~----~~~~~~~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~s~~~~~r~aal~~ 400 (1012)
++..+.+.+++..|...+ ++|+++ ..++.++++..+++.++...+ +.+++.+++.+.+.+.+++|++|++|+.+
T Consensus 304 ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~~~~~~~R~aa~~a 382 (852)
T 4fdd_A 304 LVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESGILV 382 (852)
T ss_dssp HHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99875786767998669844322245640111699999999999987461-87899999999998559988999999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99999333899998299999999841799886599999999998664320558863244158999951379999579999
Q 001791 401 LAQIAEGCAKVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAH 480 (1012)
Q Consensus 401 l~~l~~~~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~ 480 (1012)
+|.+++++++.+.++++.+++.++..++|+++.||.++++++++++++.++.....+...+++.+++.+.+ +++.||..
T Consensus 383 lg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d-~~~~vr~~ 461 (852)
T 4fdd_A 383 LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEA 461 (852)
T ss_dssp HHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTC-SSHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC-CCHHHHHH
T ss_conf 99998635688998799999999987179988999999999999998861104789999999999999858-98889999
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998601896543374799999999986238754999999999999998276458--5474456889999961066
Q 001791 481 AASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQ--KYYDAVMPFLKAILVNATD 558 (1012)
Q Consensus 481 a~~~l~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~--~~~~~il~~l~~~l~~~~~ 558 (1012)
|+.++..+++.++.. +.||++.+++.+...++.........++.+++.++...+..+. +|++.++|.+.+.+....+
T Consensus 462 a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d 540 (852)
T 4fdd_A 462 ACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKD 540 (852)
T ss_dssp HHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999973676-6767999999999999883747999999999999997424313678999988999999873330
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-------------CCC-CCCCHHHHHHHHHHHHHHHH
Q ss_conf 3210025799999999996417332255499999999998358-------------899-99702379999999999880
Q 001791 559 KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS-------------QME-TDDPTTSYMLQAWARLCKCL 624 (1012)
Q Consensus 559 ~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~-------------~~~-~~~~~~~~~~~~~~~l~~~~ 624 (1012)
. ...++ .+++|++.++.++| ..|.||++.+++.++.+... ..+ .+..++..++.+++.++..+
T Consensus 541 ~-~~~~~-~~~~~l~~i~~~~g-~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l 617 (852)
T 4fdd_A 541 E-DKDLF-PLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGL 617 (852)
T ss_dssp T-CTTHH-HHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHH
T ss_pred C-CHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4-69999-99999999999974-867988999999999999999999987533886668876119999999997899987
Q ss_pred CCCCCCCH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 37842313--6635999997045998222478987654578875410220289035530216998999999999999994
Q 001791 625 GQDFLPYM--SVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADEL 702 (1012)
Q Consensus 625 ~~~~~~~l--~~ii~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~ 702 (1012)
|..+.+|+ +.+++.++..+.. +. .+.+..++.+++.++..+
T Consensus 618 ~~~~~~~~~~~~~~~~l~~~l~~-~~------------------------------------~~vr~~a~~~l~~l~~~~ 660 (852)
T 4fdd_A 618 GGNIEQLVARSNILTLMYQCMQD-KM------------------------------------PEVRQSSFALLGDLTKAC 660 (852)
T ss_dssp GGGGHHHHHTCCHHHHHHHHTTC-SS------------------------------------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCHHHHHHHHHCC-CC------------------------------------HHHHHHHHHHHHHHHHHH
T ss_conf 47699883677189999998389-98------------------------------------449999999999999981
Q ss_pred HHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 00153319988987600247658977999999859999999999998089999997999999999999999998109-91
Q 001791 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKE-PD 781 (1012)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~ 781 (1012)
+..+.||++.+++.+.+.++.. +.++|..|+.++|.++...+ +...+++..+++.|++.+.+. ..
T Consensus 661 ~~~~~~~l~~~lp~l~~~l~~~-~~~v~~~a~~alg~i~~~~~-------------~~~~p~~~~il~~L~~~l~~~~~~ 726 (852)
T 4fdd_A 661 FQHVKPCIADFMPILGTNLNPE-FISVCNNATWAIGEISIQMG-------------IEMQPYIPMVLHQLVEIINRPNTP 726 (852)
T ss_dssp GGGTGGGHHHHHHHHHHTCCTT-SHHHHHHHHHHHHHHHHHHG-------------GGGGGGTHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6888987999999999876942-06899999999999999711-------------767878999999999985799887
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998399999988999999999999988976999999730668997875674554465999999999
Q 001791 782 TEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVG 861 (1012)
Q Consensus 782 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~ 861 (1012)
.. ++++++
T Consensus 727 ~~------------------------------------------------------------------------~~~~a~ 734 (852)
T 4fdd_A 727 KT------------------------------------------------------------------------LLENTA 734 (852)
T ss_dssp HH------------------------------------------------------------------------HHHHHH
T ss_pred CH------------------------------------------------------------------------HHHHHH
T ss_conf 20------------------------------------------------------------------------778899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998000313549898875754215999998999999979999877216567525748999
Q 001791 862 EILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPF 927 (1012)
Q Consensus 862 ~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~ 927 (1012)
.++|.++..+++.+.|++..+++..+..+....+..+|..++..+..++...+..+.+.+..++..
T Consensus 735 ~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~ 800 (852)
T 4fdd_A 735 ITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDA 800 (852)
T ss_dssp HHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred HHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 999999986889767558999999999865366607999999999999986918688889999999
No 2
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=509.42 Aligned_cols=800 Identities=17% Similarity=0.261 Sum_probs=618.7
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------
Q ss_conf 9906899999993-3999388799999998865129248999999998069-997799989999997503588-------
Q 001791 19 PDSAPFETLISHL-MSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD------- 89 (1012)
Q Consensus 19 ~d~~~l~~ll~~~-~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~-~~~~vr~~a~~~L~~~i~~~~------- 89 (1012)
||.+++.++|..+ ++||++.|++|+++|+++++++++.+...|++++.++ .++.+|++|++.||+.+..+|
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~ 80 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899867999999998702257574878999
Q ss_pred CCCCCC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 874557-898789999999989995152276999999999999842169999202799999950299-877789999999
Q 001791 90 SFLWPR-LSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD-SVKLQESAFLIF 167 (1012)
Q Consensus 90 ~~~w~~-~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~-~~~~r~~al~~l 167 (1012)
...|.. ++++.+..||..+++.+.+ ++..+|+.++.+++.++..++|.+.||++++.+.+.+.++ ++..|++++.++
T Consensus 81 ~~~~~~~l~~~~~~~ik~~ll~~l~~-~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 81 AQRWITQVSPEAKNQIKTNALTALVS-IEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 97676629999999999999998779-96379999999999999846764554999999999872689789999999999
Q ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9936667522---0000999999999853699-99589999999999999830691128679746999999999998369
Q 001791 168 AQLSQYIGDT---LTPHLKHLHAVFLNCLTNS-NNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNG 243 (1012)
Q Consensus 168 ~~l~~~~~~~---~~~~~~~l~~~l~~~l~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~ 243 (1012)
+.+++..++. +.++.+.+++.+...+.++ .+..||..+++++..++.++....... ...+.+++.+...++++
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~---~~~~~ll~~l~~~~~~~ 236 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE---GERNYLMQVVCEATQAE 236 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSH---HHHHHHHHHHHHHHTCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHCCC
T ss_conf 999972784356789889999999998415799987899999999999999999870676---68999999999986599
Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC----------CCHHH
Q ss_conf 9678999999999987211398999499-999999996426875357899999999999872101----------53122
Q 001791 244 NEATAQEALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER----------APGMM 312 (1012)
Q Consensus 244 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~----------~~~~~ 312 (1012)
++.+|..++++|..++..++..+.+++. .+++.++.... +.++.+|..++++|..+++.... .|...
T Consensus 237 ~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 314 (861)
T 2bpt_A 237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK--SPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQS 314 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 8899999999999999998899999889999999999873--77278999999999999987886433321035773256
Q ss_pred -HCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
Q ss_conf -0143469999999999625679984545789987554677611069999999997729974347788779884279896
Q 001791 313 -RKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEW 391 (1012)
Q Consensus 313 -~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~s~~~ 391 (1012)
+...+++..++|.++..+.+.+++ +++++++.+..+..++..++..++ +.+++.+++.+.+.+.+.+|
T Consensus 315 ~~~~~~~~~~il~~ll~~l~~~~~d----------~~d~~~~~r~~a~~~L~~l~~~~~-~~~~~~l~~~l~~~l~~~~~ 383 (861)
T 2bpt_A 315 YNFALSSIKDVVPNLLNLLTRQNED----------PEDDDWNVSMSAGACLQLFAQNCG-NHILEPVLEFVEQNITADNW 383 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCCC-----------CCCCCHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC----------CCCCCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCH
T ss_conf 9999999988999999998706653----------012468689999999999998740-86899999999987579972
Q ss_pred HHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHC
Q ss_conf 589999999999993338-99998299999999841799886599999999998664320558-8632441589999513
Q 001791 392 QKHHAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAM 469 (1012)
Q Consensus 392 ~~r~aal~~l~~l~~~~~-~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l 469 (1012)
+.|++++.+++.+++++. +.+.++++.+++.++..+.|+++.||.++++++++++..+++.+ ...+++.+++.+++.+
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l 463 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL 463 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 69999999999998599878889989999999998828995999999999999999873540487888999999999976
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC---CCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 799995799999999999860189---65433747999999999862387--5499999999999999827645854744
Q 001791 470 DDFQNPRVQAHAASAVLNFSENCT---PEILTPYLDGIVSKLLVLLQNGK--QMVQEGALTALASVADSSQEHFQKYYDA 544 (1012)
Q Consensus 470 ~~~~~~~v~~~a~~~l~~l~~~~~---~~~l~~~~~~il~~l~~~l~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 544 (1012)
++ + +.++..+++++..+++.++ ...+.||++.+++.+...+.+.+ ..+|..++.+++.++...+..+.+|+..
T Consensus 464 ~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~ 541 (861)
T 2bpt_A 464 QD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS 541 (861)
T ss_dssp TS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred CC-C-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 44-7-289999999999999862313542468999999999999985758615899999999999999762656999999
Q ss_pred HHHHHHHHHHHCC-------C----CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCC-CHHHH
Q ss_conf 5688999996106-------6----3210025799999999996417332255499999999998358899997-02379
Q 001791 545 VMPFLKAILVNAT-------D----KSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDD-PTTSY 612 (1012)
Q Consensus 545 il~~l~~~l~~~~-------~----~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~-~~~~~ 612 (1012)
++|.+.+.+.... + +....+|..++.+++.++..+|. .+.|+.+.+++.++...... +. .+++.
T Consensus 542 l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~---~~~~v~~~ 617 (861)
T 2bpt_A 542 ISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKK---DSAFIEDD 617 (861)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHST---TGGGTHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCC---CCCCHHHH
T ss_conf 999999999988753201388556777999999999999999998556-34789999999999997467---88757999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHH
Q ss_conf 99999999988037842313663599999704599822247898765457887541022028903553021699899999
Q 001791 613 MLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATAC 692 (1012)
Q Consensus 613 ~~~~~~~l~~~~~~~~~~~l~~ii~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~ 692 (1012)
++.+++.++...|..|.||++.+++.+++.++. ++ .+.+..++
T Consensus 618 ~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~-~~------------------------------------~~vr~~a~ 660 (861)
T 2bpt_A 618 VFYAISALAASLGKGFEKYLETFSPYLLKALNQ-VD------------------------------------SPVSITAV 660 (861)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHC-TT------------------------------------SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CC------------------------------------HHHHHHHH
T ss_conf 999999999997660999999999999988655-66------------------------------------78999999
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99999999940015331998898760024765-89779999998599999999999980899999979999999999999
Q 001791 693 NMLCCYADELKEGFFPWIDQVAPTLVPLLKFY-FHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPA 771 (1012)
Q Consensus 693 ~~l~~i~~~~~~~~~p~~~~~~~~l~~~l~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 771 (1012)
.+++.++...+..+.||++.+++.+...+.+. .+.++|..++.+++.++..++ +.+.++++.++|.
T Consensus 661 ~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~-------------~~~~~~l~~~l~~ 727 (861)
T 2bpt_A 661 GFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG-------------ADFIPYLNDIMAL 727 (861)
T ss_dssp HHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG-------------GGGHHHHHHHHHH
T ss_pred HHHHHHHHHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_conf 999999987454031119999999999727865567665999999999999840-------------5089999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99998109919999999999999999839999998899999999999998897699999973066899787567455446
Q 001791 772 LVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENE 851 (1012)
Q Consensus 772 l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e 851 (1012)
+++.+...... + |++ ..+
T Consensus 728 l~~~~~~~~~~-----------------~--------------------------------------d~d-------~~~ 745 (861)
T 2bpt_A 728 CVAAQNTKPEN-----------------G--------------------------------------TLE-------ALD 745 (861)
T ss_dssp HHHHHTCCCSS-----------------S--------------------------------------SHH-------HHH
T ss_pred HHHHHHCCCCC-----------------C--------------------------------------CHH-------HHH
T ss_conf 99997367899-----------------9--------------------------------------758-------899
Q ss_pred HHHHHHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHCCC--C-CHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H
Q ss_conf 599999999999999999800---031354989887575421599--9-9989999999799998772-165675257-4
Q 001791 852 QEEEVFDQVGEILGTLIKTFK---AAFLPFFDELSSYLTPMWGKD--K-TAEERRIAICIFDDVAEQC-REAALKYYE-T 923 (1012)
Q Consensus 852 ~~~~~~~~~~~~l~~l~~~~~---~~~~~~~~~ll~~l~~~l~~~--~-~~~~~~~~~~~l~~l~~~~-~~~~~~~~~-~ 923 (1012)
....++..+.++++.++...+ ..+.+++..+++.+...+.+. . +..+|..++.+++.+++.. |..+.+|++ .
T Consensus 746 ~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~ 825 (861)
T 2bpt_A 746 YQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQD 825 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCH
T ss_conf 99999999999999999998267788999999999999998748555786999999999999999882882488987267
Q ss_pred HHHHHHHHCC---CCCHHHHHHHHHHHHHHHHH
Q ss_conf 8999995536---99935888878999999853
Q 001791 924 YLPFLLEACN---DENQDVRQAAVYGLGVCAEF 953 (1012)
Q Consensus 924 l~~~~~~~l~---~~~~~vr~~a~~~lg~l~~~ 953 (1012)
+++.+++.+. +.+..++.+|.|+++.+.+.
T Consensus 826 ~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~ 858 (861)
T 2bpt_A 826 WVIDYIKRTRSGQLFSQATKDTARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999988535578877899999999999987
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=489.33 Aligned_cols=811 Identities=17% Similarity=0.240 Sum_probs=600.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHCCCCC-------CCCCC
Q ss_conf 8999999933999388799999998865129248999999998069-997799989999997503588-------87455
Q 001791 23 PFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRS-PHPEARAMAAVLLRKLLTRDD-------SFLWP 94 (1012)
Q Consensus 23 ~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~-~~~~vr~~a~~~L~~~i~~~~-------~~~w~ 94 (1012)
++.++|+.++++|+++|++|+++|+++.++++..+...|++++.++ .++.+|+.|++.||+.+...+ ...|.
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~ 81 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWL 81 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 68999997629898999999999999871680469999999985789987999999999987605543476789986440
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 7898789999999989995152276999999999999842169999202799999950299--87778999999999366
Q 001791 95 RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD--SVKLQESAFLIFAQLSQ 172 (1012)
Q Consensus 95 ~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~--~~~~r~~al~~l~~l~~ 172 (1012)
.++++.+..||..+++.+.+ ++..+ +.++.+++.+++.+++.+.||++++.+.+.+.++ ++..|.+++.+++.+++
T Consensus 82 ~l~~~~~~~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~ 159 (876)
T 1qgr_A 82 AIDANARREVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159 (876)
T ss_dssp TSCHHHHHHHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCC-CCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 69999999999999998679-94788-99999999999846762256889999999870889879999999999999987
Q ss_pred HH-HHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 67-52200009999999998536999-95899999999999998306911286797469999999999983699678999
Q 001791 173 YI-GDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQE 250 (1012)
Q Consensus 173 ~~-~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~ 250 (1012)
.. ++.+..+.+.+++.+.+++.++. +..+|..+++++..++.++........ ..+.+++.+...+.+.++++|..
T Consensus 160 ~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~---~~~~il~~l~~~~~~~~~~vr~~ 236 (876)
T 1qgr_A 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES---ERHFIMQVVCEATQCPDTRVRVA 236 (876)
T ss_dssp HSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH---HHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 458766786799999999986167999889999999999999999999887178---99999999998717998899999
Q ss_pred HHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC-------------CC--HHHHC
Q ss_conf 999999987211398999499-999999996426875357899999999999872101-------------53--12201
Q 001791 251 ALELLIELAGTEPRFLRRQLV-DVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARER-------------AP--GMMRK 314 (1012)
Q Consensus 251 a~~~L~~l~~~~~~~~~~~~~-~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~-------------~~--~~~~~ 314 (1012)
++++|..++..++..+.+++. .+++.++.... +.++.+|..++++|..+++.... .| .....
T Consensus 237 a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (876)
T 1qgr_A 237 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMK--SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFY 314 (876)
T ss_dssp HHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 999999999986999998877899999999963--873499999999999998878767665100112477754201899
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 43469999999999625679984545789987554677611069999999997729974347788779884279896589
Q 001791 315 LPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAAPEWQKH 394 (1012)
Q Consensus 315 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~s~~~~~r 394 (1012)
..+++..+++.++..+...+++ ++++++..+.++..++..++..++ +.+++.+++.+...+.+++|++|
T Consensus 315 ~~~~~~~ll~~ll~~l~~~~~d----------~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~~~~~~~r 383 (876)
T 1qgr_A 315 AKGALQYLVPILTQTLTKQDEN----------DDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR 383 (876)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS----------CCTTCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCC----------CCCCCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 9998988707999875313344----------454521799999999999998775-86699999999988469982899
Q ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999993338-99998299999999841799886599999999998664320558-8632441589999513799
Q 001791 395 HAALIALAQIAEGCA-KVMVKNLEQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDL-QNQFHPQVLPALAGAMDDF 472 (1012)
Q Consensus 395 ~aal~~l~~l~~~~~-~~~~~~l~~ii~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~il~~l~~~l~~~ 472 (1012)
++++.+++.++.++. +.+.++++.+++.++..++|+++.||.+|+++++++++.+++.. ..++++.+++.++..+.+
T Consensus 384 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~- 462 (876)
T 1qgr_A 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA- 462 (876)
T ss_dssp HHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCC-
T ss_conf 9999999999748877789999999999999986799789999999999999985720114477799999999998758-
Q ss_pred CCHHHHHHHHHHHHHHHHCCC-------------CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 995799999999999860189-------------6543374799999999986238---754999999999999998276
Q 001791 473 QNPRVQAHAASAVLNFSENCT-------------PEILTPYLDGIVSKLLVLLQNG---KQMVQEGALTALASVADSSQE 536 (1012)
Q Consensus 473 ~~~~v~~~a~~~l~~l~~~~~-------------~~~l~~~~~~il~~l~~~l~~~---~~~v~~~a~~~l~~l~~~~~~ 536 (1012)
+ +.|+..+++++..++..++ .+.+.||++.+++.+...+.+. ...+|..++.+++.++...+.
T Consensus 463 ~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~ 541 (876)
T 1qgr_A 463 E-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK 541 (876)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred C-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCH
T ss_conf 8-889999999999999985020123444455540321576999999999997276742046999999999999997743
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 45854744568899999610663210025799999999996417332255499999999998358899997023799999
Q 001791 537 HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQA 616 (1012)
Q Consensus 537 ~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~ 616 (1012)
.+.+|+..+++.+...+..... .........-.... ..++..++.+
T Consensus 542 ~~~~~~~~l~~~l~~~l~~~~~--------------------~~~~~~~~~d~~~~--------------~~~~~~~~~~ 587 (876)
T 1qgr_A 542 DCYPAVQKTTLVIMERLQQVLQ--------------------MESHIQSTSDRIQF--------------NDLQSLLCAT 587 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHT--------------------TTTSCCSTTHHHHH--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------HHHCCCCHHHHHHH--------------HHHHHHHHHH
T ss_conf 1189999999999999999998--------------------87124886359999--------------9999999999
Q ss_pred HHHHHHHHC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 999998803-7842313663599999704599822247898765457887541022028903553021699899999999
Q 001791 617 WARLCKCLG-QDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNML 695 (1012)
Q Consensus 617 ~~~l~~~~~-~~~~~~l~~ii~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l 695 (1012)
++.++..+| ..+.||++.+++.+++.++...+ . ...++.++.++
T Consensus 588 l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~---------------------------~--------~~v~~~a~~~l 632 (876)
T 1qgr_A 588 LQNVLRKVQHQDALQISDVVMASLLRMFQSTAG---------------------------S--------GGVQEDALMAV 632 (876)
T ss_dssp HHHHHTTSCHHHHHTTHHHHHHHHHHHC--------------------------------C--------CHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCC---------------------------C--------CCCCHHHHHHH
T ss_conf 999999828542057899999999999985368---------------------------8--------88508999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999940015331998898760024765897799999985999999999999808999999799999999999999999
Q 001791 696 CCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEA 775 (1012)
Q Consensus 696 ~~i~~~~~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 775 (1012)
+.++...+..|.||++.+++.+...+.+..+..+|..++.+++.++..++ +.+..+...+++.+++.
T Consensus 633 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~-------------~~~~~~~~~i~~~l~~~ 699 (876)
T 1qgr_A 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ-------------SNIIPFCDEVMQLLLEN 699 (876)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG-------------GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_conf 99999987609999999999999987586508799999999999999887-------------85464599999999997
Q ss_pred HHCC-CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8109-919999999999999999839999998899999999999998897699999973066899787567455446599
Q 001791 776 LHKE-PDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEE 854 (1012)
Q Consensus 776 ~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~ 854 (1012)
+.+. .+.+++..++.+++.+....|..+. .+++.+++.+...+.. ..+..|++ ..+...
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~-~~l~~~~~~l~~~~~~------------~~~~~d~~-------~~~~~~ 759 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIALAIGGEFK-KYLEVVLNTLQQASQA------------QVDKSDYD-------MVDYLN 759 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHHTC------------CCCTTCHH-------HHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHC------------CCCCCCHH-------HHHHHH
T ss_conf 487123387639999999999997035279-9999999999999855------------58999758-------899999
Q ss_pred HHHHHHHHHHHHHHHHCCC----------CCHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHH-H
Q ss_conf 9999999999999998000----------313549898875754215999-998999999979999877216-56752-5
Q 001791 855 EVFDQVGEILGTLIKTFKA----------AFLPFFDELSSYLTPMWGKDK-TAEERRIAICIFDDVAEQCRE-AALKY-Y 921 (1012)
Q Consensus 855 ~~~~~~~~~l~~l~~~~~~----------~~~~~~~~ll~~l~~~l~~~~-~~~~~~~~~~~l~~l~~~~~~-~~~~~-~ 921 (1012)
.++..+.+++..+++..+. .+.|+++.+++.+.....+.. +..+|..++.++|.+++..|. .+.+| .
T Consensus 760 ~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 839 (876)
T 1qgr_A 760 ELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEA 839 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999999999999997457555554388999999999999999865888888999999999999998828488999970
Q ss_pred HHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 748999995-5369993588887899999985317
Q 001791 922 ETYLPFLLE-ACNDENQDVRQAAVYGLGVCAEFGG 955 (1012)
Q Consensus 922 ~~l~~~~~~-~l~~~~~~vr~~a~~~lg~l~~~~~ 955 (1012)
+.+++.++. ++.++++.+|+.|+|++|.+.+..+
T Consensus 840 ~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 840 RPMIHELLTEGRRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp SHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 48999999987546887689999999999997534
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=468.59 Aligned_cols=900 Identities=13% Similarity=0.164 Sum_probs=603.1
Q ss_pred HCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 0999068999999933999388799999998865129--------24899999999806999779998999999750358
Q 001791 17 LGPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQD--------PDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRD 88 (1012)
Q Consensus 17 ~~~d~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~--------p~~~~~~L~~il~~~~~~~vr~~a~~~L~~~i~~~ 88 (1012)
|+.+..++.++|+.+.|+|++.|.+|+..|.+..+.+ +..++..+++.+. +.++.+|+.|+..|.++..
T Consensus 1 ~~~~~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~-- 77 (1230)
T 1u6g_C 1 MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVS-- 77 (1230)
T ss_dssp ---CCHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHH--
T ss_conf 9836769999997558987859999999999997416657875679999999999866-9998999999999999997--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCC--------CCCHHHHHHHHHHC-CCCHHH
Q ss_conf 887455789878999999998999515227699999999999984216999--------92027999999502-998777
Q 001791 89 DSFLWPRLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPEN--------GWPELLPFMFQCVS-SDSVKL 159 (1012)
Q Consensus 89 ~~~~w~~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~--------~~~~ll~~l~~~~~-~~~~~~ 159 (1012)
.++++....++..+++.+.+ ++..+|..++.+++.++....+.. .|++++|.+.+.+. ++++..
T Consensus 78 ------~~~~~~~~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 78 ------KVKEYQVETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp ------TSCHHHHHHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHH
T ss_pred ------HCCHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf ------58798999999999998669-83889999999999999967974444411788999999999998757884679
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999993666752200009999999998536999958999999999999983069112867974699999999999
Q 001791 160 QESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADRDRFQDLLPLMMRTLTES 239 (1012)
Q Consensus 160 r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 239 (1012)
|.+++.++..+++..++.+.++.+.+++.+...+.++ +..+|..|+.+++.++...+. ..+..+++.+++.+..
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~----~~~~~~l~~l~~~L~~- 224 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGN----IVFVDLIEHLLSELSK- 224 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHCC-
T ss_conf 9999999999999827677887999999999987599-689999999999999985689----9999999999998616-
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHH
Q ss_conf 83699678999999999987211398999499999999996426875357899999999999872101531220143469
Q 001791 240 LNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFI 319 (1012)
Q Consensus 240 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 319 (1012)
..+...|..+++++..++...+..+.+|+..+++.++..+. +.++.+|..++.++..+++. .+ ..+.+++
T Consensus 225 --~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~--d~~~~vR~~a~~~l~~l~~~---~~---~~~~~~l 294 (1230)
T 1u6g_C 225 --NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN--VDDDELREYCIQAFESFVRR---CP---KEVYPHV 294 (1230)
T ss_dssp --TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHS--SCCTTTHHHHHHHHHHHHHC---TT---CCCHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH---CH---HHHHHHH
T ss_conf --77556899999999999998689899889999999999866--89778999999999999997---84---8777768
Q ss_pred HHHHHHHHHHHCCCCC-----CCCCCC------CCCCC---------CCCCCCCCHHHHHHHHHHHHHHCCC--CCCHHH
Q ss_conf 9999999996256799-----845457------89987---------5546776110699999999977299--743477
Q 001791 320 NRLFAILMSMLLDIED-----DPLWHS------AETED---------EDAGESSNYSVGQECLDRLAIALGG--NTIVPV 377 (1012)
Q Consensus 320 ~~l~~~l~~~l~~~~~-----~~~~~~------~~~~~---------ed~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~ 377 (1012)
+.+++.++..+.+..+ +.+|.. ..+++ +++..+..+..+..++..++...+. ..+++.
T Consensus 295 ~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~ 374 (1230)
T 1u6g_C 295 STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 374 (1230)
T ss_dssp HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999982789988876441101122334465301100136664555677999999999999997466679999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-------------------CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 887798842798965899999999999933-------------------3899998299999999841799886599999
Q 001791 378 ASEQLPAYLAAPEWQKHHAALIALAQIAEG-------------------CAKVMVKNLEQVLSMVLNSFRDPHPRVRWAA 438 (1012)
Q Consensus 378 il~~l~~~l~s~~~~~r~aal~~l~~l~~~-------------------~~~~~~~~l~~ii~~l~~~l~d~~~~vr~~a 438 (1012)
+++.+...+.+.+..+|.+++.+++.+... +...+..+++.+++.+.+.++++++.+|.++
T Consensus 375 l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~ 454 (1230)
T 1u6g_C 375 VSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 454 (1230)
T ss_dssp THHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98999987179865799999999999999724243434675201356455999998746999999998613778799999
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999986643205588632441589999513799995--79999999999986018965433747999999999862387
Q 001791 439 INAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNP--RVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNGK 516 (1012)
Q Consensus 439 ~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~--~v~~~a~~~l~~l~~~~~~~~l~~~~~~il~~l~~~l~~~~ 516 (1012)
+.+++.++...+..+ .++++.+++.++..+.+ +++ .++..++.++..++...+++.+.||++.+++.+...+++.+
T Consensus 455 ~~~L~~l~~~~~~~l-~~~l~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~ 532 (1230)
T 1u6g_C 455 FNMLTELVNVLPGAL-TQHIPVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF 532 (1230)
T ss_dssp HHHHHHHHHHSTTTT-GGGHHHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS
T ss_pred HHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999761105-77799999999999748-7885168999999999999838988788679999999999971424
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 54999999999999998276-------45854744568899999610663210025799999999996417332255499
Q 001791 517 QMVQEGALTALASVADSSQE-------HFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAK 589 (1012)
Q Consensus 517 ~~v~~~a~~~l~~l~~~~~~-------~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~~~~~~ 589 (1012)
..++..++.+++.++..++. .+.||++.++|.+...+.. .+.+..+|..++.+++.++...| +.+.++.+
T Consensus 533 ~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~--~d~~~~vr~~a~~~lg~L~~~~g-~~~~~~~~ 609 (1230)
T 1u6g_C 533 YKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA--ADIDQEVKERAISCMGQIICNLG-DNLGSDLP 609 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC--SSSCHHHHHHHHHHHHHHHHHTG-GGCCTHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHC-CHHHHHHH
T ss_conf 6899999999999998716755565323278999999999998732--69988999999999999999827-03244388
Q ss_pred HHHHHHHHHHCCCC-------------------------------------CCCCCHHHHHHHHHHHHHHHHCCC-----
Q ss_conf 99999999835889-------------------------------------999702379999999999880378-----
Q 001791 590 QVMEVLMSLQGSQM-------------------------------------ETDDPTTSYMLQAWARLCKCLGQD----- 627 (1012)
Q Consensus 590 ~i~~~l~~l~~~~~-------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~----- 627 (1012)
.+++.+........ +.+..+|..++.+++.++...+..
T Consensus 610 ~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~ 689 (1230)
T 1u6g_C 610 NTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAM 689 (1230)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 99999998844530599999999999818564436888999999999999867888999999999999960433389899
Q ss_pred -------------------------------------CCCCHHHHHHHHHHHHCCCC-CCC-----------CCCCCCC-
Q ss_conf -------------------------------------42313663599999704599-822-----------2478987-
Q 001791 628 -------------------------------------FLPYMSVVMPPLLQSAQLKP-DVT-----------ITSADSD- 657 (1012)
Q Consensus 628 -------------------------------------~~~~l~~ii~~ll~~~~~~~-~~~-----------~~~~~~~- 657 (1012)
+.++.+.+++.++..+.... ... .......
T Consensus 690 v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 769 (1230)
T 1u6g_C 690 IDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNN 769 (1230)
T ss_dssp HHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998763575418789999999999988491267776776899999997586210578999999999998347887
Q ss_pred CCCC------------CCCC-CCCCHHH------------CCC--------CEEEECC--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 6545------------7887-5410220------------289--------0355302--16998999999999999994
Q 001791 658 NEIE------------DSDD-DSMETIT------------LGD--------KRIGIKT--SVLEEKATACNMLCCYADEL 702 (1012)
Q Consensus 658 ~~~~------------~~~~-~~~~~~~------------~~~--------~~~~v~~--~~~~~k~~a~~~l~~i~~~~ 702 (1012)
.... +.++ ....... .++ ....+++ .....+..++.+++.+....
T Consensus 770 ~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~ 849 (1230)
T 1u6g_C 770 LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHI 849 (1230)
T ss_dssp CSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 88999999985003578873200010489999999999846566689999999983788766799999999999861567
Q ss_pred HHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 00153319988987600247658977999999859999999999998089999997999999999999999998109919
Q 001791 703 KEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDT 782 (1012)
Q Consensus 703 ~~~~~p~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 782 (1012)
.+.++ +++.+.+.+.+.+. ++.||.+|+.++|.+.... ...++|.+++.+..+ +
T Consensus 850 --~~~~~-~~l~~~~~~~l~~~-~~~Vr~aAa~aLg~l~~~~--------------------~~~~lp~ll~~l~~~--~ 903 (1230)
T 1u6g_C 850 --DLSGQ-LELKSVILEAFSSP-SEEVKSAASYALGSISVGN--------------------LPEYLPFVLQEITSQ--P 903 (1230)
T ss_dssp --CCCSC-THHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHT--------------------HHHHHHHHHHHHHSC--G
T ss_pred --CCCCC-CCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHCC--C
T ss_conf --87656-41899999984799-7789999999968775269--------------------998899999987266--0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999983999999889999999999999889769999997306689978756745544659999999999
Q 001791 783 EICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGE 862 (1012)
Q Consensus 783 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~ 862 (1012)
+.+...+.++.+++...+... +.++.+.++..|..... + .++.++..+++
T Consensus 904 ~~~~~~l~al~e~i~~~~~~~----~~~~~~~i~~~L~~~~~------------~--------------~~~~~r~~~a~ 953 (1230)
T 1u6g_C 904 KRQYLLLHSLKEIISSASVVG----LKPYVENIWALLLKHCE------------C--------------AEEGTRNVVAE 953 (1230)
T ss_dssp GGHHHHHHHHHHHHHSSCSTT----THHHHHHHHHHHTTCCC------------C--------------SSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHC------------C--------------CCHHHHHHHHH
T ss_conf 324988999999982387666----77669999999998733------------8--------------30446899998
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99999998000313549898875754215999998999999979999877216567525748999995536999358888
Q 001791 863 ILGTLIKTFKAAFLPFFDELSSYLTPMWGKDKTAEERRIAICIFDDVAEQCREAALKYYETYLPFLLEACNDENQDVRQA 942 (1012)
Q Consensus 863 ~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~~~~~vr~~ 942 (1012)
|+|.++...++.+ +|.+...+ ++.++..|..++..++.++..++..+.++++.+++.++..++|++..||++
T Consensus 954 ~lg~l~~~~~~~l-------~p~l~~~l-~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~ 1025 (1230)
T 1u6g_C 954 CLGKLTLIDPETL-------LPRLKGYL-ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRV 1025 (1230)
T ss_dssp HHHHHHHSSGGGT-------HHHHTTTS-SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHH
T ss_pred HHHHHHCCCHHHH-------HHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8756650676888-------89999985-699788999999999999706823358989998999998648985879999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC------------CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 789999998531776289999999999985259987------------88000246789999999998674699981211
Q 001791 943 AVYGLGVCAEFGGSVVKPLVGEALSRLNVVIRHPNA------------LQPENLMAYDNAVSALGKICQFHRDSIDAAQV 1010 (1012)
Q Consensus 943 a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~------------~~~~~~~~~~na~~~~~~l~~~~~~~~~~~~~ 1010 (1012)
|+++++.++++.+..+.+++..+++.|++.+..+.. +.+++..+|.||..|+++++.++++.+++.++
T Consensus 1026 a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~ 1105 (1230)
T 1u6g_C 1026 ALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEF 1105 (1230)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999842857689779889899998830268760133058960236774899999999999999988874789999
Q ss_pred C
Q ss_conf 2
Q 001791 1011 L 1011 (1012)
Q Consensus 1011 ~ 1011 (1012)
+
T Consensus 1106 ~ 1106 (1230)
T 1u6g_C 1106 L 1106 (1230)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 5
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=405.42 Aligned_cols=598 Identities=12% Similarity=0.169 Sum_probs=456.0
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCCCCCCCCC---
Q ss_conf 9906899999993399938879999999886512924899999999806-999779998999999750358887455---
Q 001791 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQR-SPHPEARAMAAVLLRKLLTRDDSFLWP--- 94 (1012)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~-~~~~~vr~~a~~~L~~~i~~~~~~~w~--- 94 (1012)
.|.+++.++|..+++||+++| |+++|+++++ +|++ ...|++++.+ +.+..+|++|+++|||.+.++ |.
T Consensus 2 ~d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~-~p~~-~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~----w~~~~ 73 (960)
T 1wa5_C 2 SDLETVAKFLAESVIASTAKT--SERNLRQLET-QDGF-GLTLLHVIASTNLPLSTRLAGALFFKNFIKRK----WVDEN 73 (960)
T ss_dssp CHHHHHHHHHHHTTSGGGHHH--HHHHHHHHHT-STTH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH----SBCSS
T ss_pred CCHHHHHHHHHHHCCCCHHHH--HHHHHHHHHC-CCCH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----CCCCC
T ss_conf 759999999997659987899--9999998555-9988-99999998657988889999999999999854----88765
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf ---78987899999999899951522769999999999998421699992027999999502998777899999999936
Q 001791 95 ---RLSLHTQSSLKSMLLQSIQLESAKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQLS 171 (1012)
Q Consensus 95 ---~~~~~~~~~i~~~ll~~l~~~~~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~ 171 (1012)
.++++.+..||..+++.+.++ +..+|+.++.+++.|+++++| +.||++++.|.+.+++++...+.+++.++..++
T Consensus 74 ~~~~l~~~~k~~ik~~ll~~l~~~-~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~ 151 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIVPLMISL-PNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIF 151 (960)
T ss_dssp SCBSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 678899899999999999999808-799999999999999986171-301579999999847898899999999999999
Q ss_pred HHHHH---------H----CCCCHHHHHHHHH---HHHCCCCC--HHHH------HHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 66752---------2----0000999999999---85369999--5899------9999999999983069112867974
Q 001791 172 QYIGD---------T----LTPHLKHLHAVFL---NCLTNSNN--PDVK------IAALNAVINFIQCLTSSADRDRFQD 227 (1012)
Q Consensus 172 ~~~~~---------~----~~~~~~~l~~~l~---~~l~~~~~--~~vr------~~a~~~l~~~~~~~~~~~~~~~~~~ 227 (1012)
+.... . +....+.+++++. +++.+..+ ..++ ..+++++..+... . .+..+.+
T Consensus 152 ~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~-~---~~~~~~~ 227 (960)
T 1wa5_C 152 KRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ-D---IPEFFED 227 (960)
T ss_dssp GGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS-C---CCHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC-C---CHHHHHH
T ss_conf 99887614847789999999998999999999999998735798799999999999999999998625-6---5599999
Q ss_pred HHHHHHHHHHHHHHC------CC---------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCCCCHH
Q ss_conf 699999999999836------99---------67899999999998721139899949999999999642---6875357
Q 001791 228 LLPLMMRTLTESLNN------GN---------EATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAE---AESLEEG 289 (1012)
Q Consensus 228 ~~~~il~~l~~~l~~------~~---------~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~ 289 (1012)
.++.+++.+...+.. .+ +.++..++++|..+.+.+++.+.++++.+++.++..+. +...++.
T Consensus 228 ~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~ 307 (960)
T 1wa5_C 228 NIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDI 307 (960)
T ss_dssp THHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 89999999999976899855578553313279999999999999999998999999999999999999984377767289
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHCC--HHHHHHHH-HHHHHHHCCCCC-CCCCCCCCCC-----CCCCCCCCCHHHHHH
Q ss_conf 89999999999987210153122014--34699999-999996256799-8454578998-----755467761106999
Q 001791 290 TRHLAIEFVITLAEARERAPGMMRKL--PQFINRLF-AILMSMLLDIED-DPLWHSAETE-----DEDAGESSNYSVGQE 360 (1012)
Q Consensus 290 vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~~~~l~-~~l~~~l~~~~~-~~~~~~~~~~-----~ed~~~~~~~~~a~~ 360 (1012)
++..++++|..+++.+. ....+ ++++..++ +.++..|...++ .+.|..++++ .++++.++.+.+|..
T Consensus 308 ~~~~al~fl~~~~~~~~----~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~ 383 (960)
T 1wa5_C 308 LVSKSLSFLTAVTRIPK----YFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTD 383 (960)
T ss_dssp HHHHHHHHHHHHHTSHH----HHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHH----HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99999999999968676----89987685189999999968734888878998844999999863575512371889999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHC---HHHHHH-----HHHHH-HHHHHH
Q ss_conf 999999772997434778877988427------989658999999999999333---899998-----29999-999984
Q 001791 361 CLDRLAIALGGNTIVPVASEQLPAYLA------APEWQKHHAALIALAQIAEGC---AKVMVK-----NLEQV-LSMVLN 425 (1012)
Q Consensus 361 ~l~~l~~~~~~~~~~~~il~~l~~~l~------s~~~~~r~aal~~l~~l~~~~---~~~~~~-----~l~~i-i~~l~~ 425 (1012)
+++.++..++ +.+++.+++++.+.+. +++|+.|++|++++|.++++. ...... .+..+ ...+++
T Consensus 384 ~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p 462 (960)
T 1wa5_C 384 FLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP 462 (960)
T ss_dssp HHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH
T ss_pred HHHHHHHHCC-HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999701-327899999999999873669612179999999999999987412567741234435699999997378
Q ss_pred HCCCC---CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC----------
Q ss_conf 17998---86599999999998664320558863244158999951379999579999999999986018----------
Q 001791 426 SFRDP---HPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENC---------- 492 (1012)
Q Consensus 426 ~l~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~---------- 492 (1012)
.+.++ ++.||.+|+|++|++++++. .+++..+++.+++.+.+ +++.|+..|+.++..+++..
T Consensus 463 ~l~~~~~~~p~vr~~a~~~lg~~~~~~~----~~~l~~~l~~l~~~L~d-~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 463 DLTSNNIPHIILRVDAIKYIYTFRNQLT----KAQLIELMPILATFLQT-DEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp HHHCSSCSCHHHHHHHHHHHHHTGGGSC----HHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred HHCCCCCCCCEEHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 7449988883303989999999886589----99999999999998489-972199999999999984436444665443
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHH
Q ss_conf 965433747999999999862387-----5499999999999999827645854744568899999610-6632100257
Q 001791 493 TPEILTPYLDGIVSKLLVLLQNGK-----QMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNA-TDKSNRMLRA 566 (1012)
Q Consensus 493 ~~~~l~~~~~~il~~l~~~l~~~~-----~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~-~~~~~~~lr~ 566 (1012)
..+.+.||++.+++.|+.+++... ....+.++.+++.++...++.+.||++.+++.+...+... .++++..++.
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~ 617 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTH 617 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 59875646999999999999714678776432279999999999988886124799999999999999973989727889
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH--HHHC
Q ss_conf 99999999996417332255499999999998358899997023799999999998803784231366359999--9704
Q 001791 567 KSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLL--QSAQ 644 (1012)
Q Consensus 567 ~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ii~~ll--~~~~ 644 (1012)
.+++|++.++++.+++.+.++.+.+++.+..+..... ....++++..+..+.... ..+.+|+..+.+.++ ..+.
T Consensus 618 ~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~---~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~ 693 (960)
T 1wa5_C 618 YTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDI---QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWE 693 (960)
T ss_dssp HHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTC---TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHCCHHHHC
T ss_conf 9999999999638953699999999999999998605---766999999999999735-478899999999980999855
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=392.65 Aligned_cols=607 Identities=14% Similarity=0.171 Sum_probs=450.1
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCH
Q ss_conf 99068999999933999388799999998865129248999999998069997799989999997503588874557898
Q 001791 19 PDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLSL 98 (1012)
Q Consensus 19 ~d~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~~~~ 98 (1012)
+|.+++.+++..+++||++.|++|+++|+++++ .|+.| ..+.+++..+.++.+|++|++.|++.++.+ |..+++
T Consensus 4 ~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~-~p~~w-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~~ 77 (971)
T 2x1g_F 4 IDIARLEEAVVSFYRSNSQNQAITHEWLTDAEA-SPQAW-QFSWQLMQLGKSQEVQFFGAITLHSKLMKH----WHEVPP 77 (971)
T ss_dssp -------CTHHHHHTSTTTC----CHHHHHTTT-STHHH-HHHHHHTCTTSCHHHHHHHHHHHHHHHHHC----GGGCCG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----HHHCCH
T ss_conf 559999999998769999999999999999874-97989-999999835994989999999999999715----864999
Q ss_pred HHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC------CHHHHHHHHHHHHHH
Q ss_conf 789999999989995152--276999999999999842169999202799999950299------877789999999993
Q 001791 99 HTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSD------SVKLQESAFLIFAQL 170 (1012)
Q Consensus 99 ~~~~~i~~~ll~~l~~~~--~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~------~~~~r~~al~~l~~l 170 (1012)
+.+..+|+.+++.+.+.. ++.+|+.++.+++.|+++++| .||++++.+.+.++++ +...+..++.++..+
T Consensus 78 ~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l 155 (971)
T 2x1g_F 78 ENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAI 155 (971)
T ss_dssp GGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999986799878999999999999997062--2437999999997153345678788999999999985
Q ss_pred HHHHH------------HHCCCCHHHHHHHHHHHHCCCCCH-------HHHHHHHHHHHHHHHH--HCCC----------
Q ss_conf 66675------------220000999999999853699995-------8999999999999983--0691----------
Q 001791 171 SQYIG------------DTLTPHLKHLHAVFLNCLTNSNNP-------DVKIAALNAVINFIQC--LTSS---------- 219 (1012)
Q Consensus 171 ~~~~~------------~~~~~~~~~l~~~l~~~l~~~~~~-------~vr~~a~~~l~~~~~~--~~~~---------- 219 (1012)
++++. +.+...++.+++.+.+.+.+..+. .++..+++|+..++.. .+..
T Consensus 156 ~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~ 235 (971)
T 2x1g_F 156 PEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLL 235 (971)
T ss_dssp HHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 99882468578999999999987999999999998554678888642367999999999998257838656631999998
Q ss_pred --------------------C-----------------------HHHHHHHHHHHHHHHHHHH---HHCCCH---HHHHH
Q ss_conf --------------------1-----------------------2867974699999999999---836996---78999
Q 001791 220 --------------------A-----------------------DRDRFQDLLPLMMRTLTES---LNNGNE---ATAQE 250 (1012)
Q Consensus 220 --------------------~-----------------------~~~~~~~~~~~il~~l~~~---l~~~~~---~~~~~ 250 (1012)
. ....+..++|.++...... ..+.+. +....
T Consensus 236 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 315 (971)
T 2x1g_F 236 EVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH 315 (971)
T ss_dssp HHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 64355302323566555676774799999999999976801132088999999999986899999985656540689999
Q ss_pred HHHHHHHHHCCCHHHHH-----------HHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHH-H-----CCCH
Q ss_conf 99999998721139899-----------94999999999964268---753578999999999998721-0-----1531
Q 001791 251 ALELLIELAGTEPRFLR-----------RQLVDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEAR-E-----RAPG 310 (1012)
Q Consensus 251 a~~~L~~l~~~~~~~~~-----------~~~~~i~~~l~~~~~~~---~~~~~vr~~a~~~l~~l~~~~-~-----~~~~ 310 (1012)
.++++..+.+.++..+. +++..+++.++.....+ ..++.++..++++|..+++.. . ..+.
T Consensus 316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~ 395 (971)
T 2x1g_F 316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK 395 (971)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999999999873157653549999999999999758888886312458789999999999974133100089
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC--
Q ss_conf 220143469999999999625679984545789987554677611069999999997729974347788779884279--
Q 001791 311 MMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLAA-- 388 (1012)
Q Consensus 311 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~s-- 388 (1012)
......+++..+++.++..+...++ .+|...+. +|+++..+.++.+..++..++..++ +.+++.+++.+.+.+.+
T Consensus 396 ~~~~~~~~~~~ll~~l~~~~~~p~~-~~~~~~d~-~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~ 472 (971)
T 2x1g_F 396 CWEYIKPLYAHLTRILVRKSEQPDE-KSLAKWSS-DDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQ 472 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCT-TTTSCSCH-HHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999998619996-24335677-5799999999999999999999970-9999999999999997346
Q ss_pred ---CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf ---8965899999999999933389999829999999984179--98865999999999986643205588632441589
Q 001791 389 ---PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVLNSFR--DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLP 463 (1012)
Q Consensus 389 ---~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~ 463 (1012)
.+|+.|++++++++.+++++.+...++++.+++. +..+. |+++.||..+++++|++++++.... ++++.+++
T Consensus 473 ~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~-l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~ 549 (971)
T 2x1g_F 473 RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRV-LAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAIN 549 (971)
T ss_dssp HCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHH-HHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHH
T ss_conf 8987389999999999999835480334779999999-98567653678999999999998788886088--98999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH-HHHHH
Q ss_conf 9995137999957999999999998601896543374799999999986238--75499999999999999827-64585
Q 001791 464 ALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EHFQK 540 (1012)
Q Consensus 464 ~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~il~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~-~~~~~ 540 (1012)
.++..+ + +.|+..|+.++..+++.++ ..+.||++.++..+...+... +...+..++++++.++...+ +.+.+
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~~~-~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRDCQ-LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHH-C---HHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 999874-8---5889999999999999988-8623007999999999972789992899999999999997299999999
Q ss_pred HHHHHHHHHHHHHHHCCC-----CCCCHHHHHHHHHHHHHHHHHC------------HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 474456889999961066-----3210025799999999996417------------33225549999999999835889
Q 001791 541 YYDAVMPFLKAILVNATD-----KSNRMLRAKSMECISLVGMAVG------------KDKFRDDAKQVMEVLMSLQGSQM 603 (1012)
Q Consensus 541 ~~~~il~~l~~~l~~~~~-----~~~~~lr~~a~~~l~~i~~~~~------------~~~~~~~~~~i~~~l~~l~~~~~ 603 (1012)
|+..+++.+...+..... ++...-...++++++.+..+++ .+.+.++.+.+++.+..+.+. .
T Consensus 625 ~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~-~ 703 (971)
T 2x1g_F 625 YLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEM-W 703 (971)
T ss_dssp HHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-C
T ss_conf 999999899999999985689982259999999999999984167776853334567883699999999999999986-4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 999702379999999999880378423136635999997045
Q 001791 604 ETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQL 645 (1012)
Q Consensus 604 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ii~~ll~~~~~ 645 (1012)
..+..+.+.++.+++.++..+|.++.||+|.+++.++..+..
T Consensus 704 ~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 704 VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT 745 (971)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 363789999999999999861440425278999999999866
No 7
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=391.10 Aligned_cols=712 Identities=17% Similarity=0.207 Sum_probs=507.1
Q ss_pred CCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 990689999999-3399938879999999886512924899999999806999779998999999750358887455789
Q 001791 19 PDSAPFETLISH-LMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1012)
Q Consensus 19 ~d~~~l~~ll~~-~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~~~ 97 (1012)
+|.+++.+++.. ..++|++.|++|+++|+++++ .|+.| ..+.+++.++.++.+|++|++.|++.++.+ |..++
T Consensus 21 ~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p~~~-~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~----w~~l~ 94 (963)
T 2x19_B 21 FTVENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SPQAW-HFSWQLLQPDKVPEIQYFGASALHIKISRY----WSDIP 94 (963)
T ss_dssp CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-STTHH-HHHHHHTSTTSCHHHHHHHHHHHHHHHHHC----GGGSC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC-CHHHH-HHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----HHHCC
T ss_conf 5599999999998359798999999999999846-99999-999998657972588999999999999738----87499
Q ss_pred HHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
Q ss_conf 8789999999989995152--27699999999999984216999920279999995029-----9877789999999993
Q 001791 98 LHTQSSLKSMLLQSIQLES--AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSS-----DSVKLQESAFLIFAQL 170 (1012)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~--~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~r~~al~~l~~l 170 (1012)
++.+..||+.+++.+.+.. ++.+|+.++.+++.|+++++| ..||++++.+.+.+++ ++...+..++.++..+
T Consensus 95 ~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p-~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l 173 (963)
T 2x19_B 95 TDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMP-DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVL 173 (963)
T ss_dssp GGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTT-TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 999999999999999987489889999999999999987483-1155599999999864335787478899999999868
Q ss_pred HHHHH-------------HHCCCCHHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHH----------------------
Q ss_conf 66675-------------220000999999999853699995-899999999999998----------------------
Q 001791 171 SQYIG-------------DTLTPHLKHLHAVFLNCLTNSNNP-DVKIAALNAVINFIQ---------------------- 214 (1012)
Q Consensus 171 ~~~~~-------------~~~~~~~~~l~~~l~~~l~~~~~~-~vr~~a~~~l~~~~~---------------------- 214 (1012)
+++.. +.+...++.+++.+.+.+.+..+. .++..+++|+..++.
T Consensus 174 ~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~ 253 (963)
T 2x19_B 174 PEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDS 253 (963)
T ss_dssp HHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTST
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99885065869999999999998788999999999827788057999999999999828998534168999999986796
Q ss_pred ---------------HHCCCCHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH------HHH
Q ss_conf ---------------306911286797469999999---99998369967899999999998721139899------949
Q 001791 215 ---------------CLTSSADRDRFQDLLPLMMRT---LTESLNNGNEATAQEALELLIELAGTEPRFLR------RQL 270 (1012)
Q Consensus 215 ---------------~~~~~~~~~~~~~~~~~il~~---l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~------~~~ 270 (1012)
..........+..+++.++.. +.......+.+.....++++..+++.++..+. +++
T Consensus 254 ~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~ 333 (963)
T 2x19_B 254 ELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF 333 (963)
T ss_dssp TTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 47999999999997531124577999999999974079999999877989999999999999998699997375565899
Q ss_pred HHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHHHHHHHCC-----CHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999964268---753578999999999998721015-----3122014346999999999962567998454578
Q 001791 271 VDVVGSMLQIAEAE---SLEEGTRHLAIEFVITLAEARERA-----PGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSA 342 (1012)
Q Consensus 271 ~~i~~~l~~~~~~~---~~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 342 (1012)
..+++.++.....+ ..++.++..++++|..+++..... +.......+++.++++.++..+.+.++ .+|...
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~-~~~~~~ 412 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSD-EEYGFW 412 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH-HHHHTS
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCC
T ss_conf 9999999999758888872034544129999999999986234445788999999999999999999809983-022677
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf 9987554677-6110699999999977299743477887798842----7989658999999999999333899998299
Q 001791 343 ETEDEDAGES-SNYSVGQECLDRLAIALGGNTIVPVASEQLPAYL----AAPEWQKHHAALIALAQIAEGCAKVMVKNLE 417 (1012)
Q Consensus 343 ~~~~ed~~~~-~~~~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l----~s~~~~~r~aal~~l~~l~~~~~~~~~~~l~ 417 (1012)
++ + +.+++ ..++.+..++..++...+ +.+++.+++.+.+.+ .+.+|+.|+++++++|.+++++.+...++++
T Consensus 413 ~~-d-e~~~~~~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~ 489 (963)
T 2x19_B 413 SS-D-EKEQFRIYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVP 489 (963)
T ss_dssp CH-H-HHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHH
T ss_pred CH-H-HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 76-3-899999999999999999999706-89999999999999972579986679989999999997043822467899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999984179988659999999999866432055886324415899995137999957999999999998601896543
Q 001791 418 QVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEIL 497 (1012)
Q Consensus 418 ~ii~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l 497 (1012)
.+++.+. .+.++++.||.+++++++++++++.... ++++.+++.++..+++ +.|+..|+.++..+++.++ +.+
T Consensus 490 ~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~--~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~-~~l 562 (963)
T 2x19_B 490 GLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP--VMINSVLPLVLHALGN---PELSVSSVSTLKKICRECK-YDL 562 (963)
T ss_dssp HHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH--HHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTG-GGC
T ss_pred HHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9999998-5799858999999999998888887588--9899999999987178---4689999999999999989-987
Q ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHH
Q ss_conf 374799999999986238--75499999999999999827-645854744568899999610----66321002579999
Q 001791 498 TPYLDGIVSKLLVLLQNG--KQMVQEGALTALASVADSSQ-EHFQKYYDAVMPFLKAILVNA----TDKSNRMLRAKSME 570 (1012)
Q Consensus 498 ~~~~~~il~~l~~~l~~~--~~~v~~~a~~~l~~l~~~~~-~~~~~~~~~il~~l~~~l~~~----~~~~~~~lr~~a~~ 570 (1012)
.||++.+++.+...+... +...+..++.+++.++...+ +.+.+|+..+++.+...+... .+++....+...++
T Consensus 563 ~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~ 642 (963)
T 2x19_B 563 PPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILG 642 (963)
T ss_dssp TTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 76699999999998635789848899999999999962999999999999998999999999827898778999999999
Q ss_pred HHHHHHHHHCH---------------------HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999964173---------------------322554999999999983588999970237999999999988037842
Q 001791 571 CISLVGMAVGK---------------------DKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFL 629 (1012)
Q Consensus 571 ~l~~i~~~~~~---------------------~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 629 (1012)
|++.++++++. +.+.++...+++.+..+..... .+..+.+.+..+++.++..+|..+.
T Consensus 643 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~ 721 (963)
T 2x19_B 643 LLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFA 721 (963)
T ss_dssp HHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTG
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999774898643322232212477778899469999999999999998566-7468999999999999975010342
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH--HCCC
Q ss_conf 31366359999970459982224789876545788754102202890355302169989999999999999940--0153
Q 001791 630 PYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK--EGFF 707 (1012)
Q Consensus 630 ~~l~~ii~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~--~~~~ 707 (1012)
||+|.+++.++......+. ...+.+++.++...+ ..+.
T Consensus 722 ~~l~~~~~~l~~~~~~~~~----------------------------------------~~~l~l~~~li~~f~~~~~~~ 761 (963)
T 2x19_B 722 PMVPQLCEMLGRMYSTIPQ----------------------------------------ASALDLTRQLVHIFAHEPAHF 761 (963)
T ss_dssp GGHHHHHHHHHHHHHHSCC----------------------------------------HHHHHHHHHHHHHHTTCTTTC
T ss_pred CCHHHHHHHHHHHHHCCCC----------------------------------------CHHHHHHHHHHHHHCCCCCHH
T ss_conf 4079999999999875785----------------------------------------089999999999857780137
Q ss_pred CCHHHHHHHHC----CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 31998898760----02476--5897799999985999999999999808999999799999999999999999810991
Q 001791 708 PWIDQVAPTLV----PLLKF--YFHEEVRKAAVSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPD 781 (1012)
Q Consensus 708 p~~~~~~~~l~----~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 781 (1012)
|++..+++.++ +.+.. ..+++++...+..+..++..+....- .++. ....+++.++..+. ..+
T Consensus 762 ~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~-------~~~~---~~~~i~~~~~~~l~-~~~ 830 (963)
T 2x19_B 762 PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFL-------CERL---DVKAVFQCAVLALK-FPE 830 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGG-------CTTS---CHHHHHHHHHHHTT-CSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHC-------CCCC---CHHHHHHHHHHHCC-CCC
T ss_conf 899999999999999998627655863899999999999975839872-------9851---47999999999757-897
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999999999839
Q 001791 782 TEICASMLDSLNECIQISG 800 (1012)
Q Consensus 782 ~~~~~~~~~~l~~~~~~~g 800 (1012)
+.+....+..+..++...+
T Consensus 831 ~~~~~~~l~~l~~l~~~~~ 849 (963)
T 2x19_B 831 APTVKASCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 7999999999999985189
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=365.38 Aligned_cols=754 Identities=12% Similarity=0.132 Sum_probs=537.8
Q ss_pred HHHHHHHHCC--CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999806--9997799989999997503588874557898789999999989995--15227699999999999984
Q 001791 58 TLKLAHLLQR--SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQ--LESAKSISKKLCDTVSELAS 133 (1012)
Q Consensus 58 ~~~L~~il~~--~~~~~vr~~a~~~L~~~i~~~~~~~w~~~~~~~~~~i~~~ll~~l~--~~~~~~vr~~~~~~l~~i~~ 133 (1012)
+..+.+++.. +.++.+|+.|-..|++. .. .++... .+...+. ...+..+|..++..+.+.++
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~---------~~-~p~~~~----~l~~il~~~~~~~~~vR~~a~~~Lkn~i~ 77 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQL---------NQ-YPDFNN----YLIFVLTKLKSEDEPTRSLSGLILKNNVK 77 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHH---------TT-SHHHHH----HHHHHHHTCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HH-CCCHHH----HHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999987394989999999999998---------70-998899----99999856688986799999999999898
Q ss_pred CCCCC---CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 21699---992027999999502998777899999999936667522000099999999985369999589999999999
Q 001791 134 NILPE---NGWPELLPFMFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVI 210 (1012)
Q Consensus 134 ~~~~~---~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~ 210 (1012)
..|.. .....+-+.+++.+.+++..+|..+..+++.++...+. ..++.+++.+.+.+.++ +..+|..++.+++
T Consensus 78 ~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~---~~wp~ll~~L~~~l~~~-~~~~r~~al~~L~ 153 (852)
T 4fdd_A 78 AHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL---QNWPDLLPKLCSLLDSE-DYNTCEGAFGALQ 153 (852)
T ss_dssp TSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT---TTCTTHHHHHHHHHSCS-SHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_conf 7447799999999999999987499899999999999999986481---35689999999987099-9899999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 99983069112867974699999999999836996789999999999872113989994999999999964268753578
Q 001791 211 NFIQCLTSSADRDRFQDLLPLMMRTLTESLNNGNEATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLEEGT 290 (1012)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~v 290 (1012)
.+++..............++.+++.+.+.++++++.+|..++.++..++...+..+.++++.+++.++.... +.++.+
T Consensus 154 ~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~--d~~~~v 231 (852)
T 4fdd_A 154 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG--DEEPEV 231 (852)
T ss_dssp HHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT--CCCHHH
T ss_pred HHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC--CCCHHH
T ss_conf 999985787563431332999999999985679789999999999999864638799889999999998717--997789
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999999999872101531220143469999999999625679984545789987554677611069999999997729
Q 001791 291 RHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLAIALG 370 (1012)
Q Consensus 291 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~~~~~ 370 (1012)
|..+++++..+++. .+. .+.+++..+++.+...+.+. +...+..+.+++..+++...
T Consensus 232 r~~a~~~L~~l~~~---~~~---~~~~~l~~l~~~l~~~~~~~-----------------~~~vr~~a~e~l~~l~~~~~ 288 (852)
T 4fdd_A 232 RKNVCRALVMLLEV---RMD---RLLPHMHNIVEYMLQRTQDQ-----------------DENVALEACEFWLTLAEQPI 288 (852)
T ss_dssp HHHHHHHHHHHHHH---CHH---HHGGGHHHHHHHHHHHHTCS-----------------SHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHH---CHH---HHHHHHHHHHHHHHHHCCCC-----------------CHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999985---779---89988999999999870699-----------------68999999999999860365
Q ss_pred ----CCCCHHHHHHHHHHHH-----------CC-----------CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Q ss_conf ----9743477887798842-----------79-----------896589999999999993338999982999999998
Q 001791 371 ----GNTIVPVASEQLPAYL-----------AA-----------PEWQKHHAALIALAQIAEGCAKVMVKNLEQVLSMVL 424 (1012)
Q Consensus 371 ----~~~~~~~il~~l~~~l-----------~s-----------~~~~~r~aal~~l~~l~~~~~~~~~~~l~~ii~~l~ 424 (1012)
-...++.+++.+.+.+ .+ .+|.+|.++..+++.++...++ ..++.+++.+.
T Consensus 289 ~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~ 365 (852)
T 4fdd_A 289 CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLK 365 (852)
T ss_dssp HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHH
T ss_conf 798878889889999998757867679986698443222456401116999999999999874618---78999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 41799886599999999998664320558863244158999951379999579999999999986018965433747999
Q 001791 425 NSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEILTPYLDGI 504 (1012)
Q Consensus 425 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~l~~~~~~i 504 (1012)
..+.++++.+|.+|+++++.+++..+..+ .++.+.+++.++..++| +++.||..++++++.+.+..+.....+|+..+
T Consensus 366 ~~l~~~~~~~R~aa~~alg~i~~~~~~~~-~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 443 (852)
T 4fdd_A 366 ELLFHHEWVVKESGILVLGAIAEGCMQGM-IPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443 (852)
T ss_dssp HHHTCSSHHHHHHHHHHHHHTTTTTHHHH-GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 98559988999999999999986356889-98799999999987179-98899999999999999886110478999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 99999986238754999999999999998276458547445688999996106632100257999999999964173322
Q 001791 505 VSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLVGMAVGKDKF 584 (1012)
Q Consensus 505 l~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~i~~~~~~~~~ 584 (1012)
++.++..+.+.+..+|..++.+++.++...+..+.||++.+++.|...+..... .....++++++.++.++|+...
T Consensus 444 l~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~----~~~~~~~~ai~~l~~~~~~~~~ 519 (852)
T 4fdd_A 444 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH----KNLLILYDAIGTLADSVGHHLN 519 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999985898889999999999999973676676799999999999988374----7999999999999997424313
Q ss_pred -HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf -5549999999999835889999702379999999999880378423136635999997045998222478987654578
Q 001791 585 -RDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDS 663 (1012)
Q Consensus 585 -~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ii~~ll~~~~~~~~~~~~~~~~~~~~~~~ 663 (1012)
.+|.+.+++.+++.++.-.+.+..+ ..++++++.++...|..|.||++.+++.+++.+............ +.+. .
T Consensus 520 ~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~-~~~~--~ 595 (852)
T 4fdd_A 520 KPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNA-QPDQ--Y 595 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTTT--S
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC--C
T ss_conf 67899998899999987333046999-999999999999974867988999999999999999999987533-8866--6
Q ss_pred CCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCH--HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87541022028903553021699899999999999999400153319--9889876002476589779999998599999
Q 001791 664 DDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAAVSAMPELL 741 (1012)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~--~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~ 741 (1012)
+.++. +.+..++.+++.++..++..+.||+ +.+++.+...+.+. ..++|+.++.+++.++
T Consensus 596 ~~~d~-----------------~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~vr~~a~~~l~~l~ 657 (852)
T 4fdd_A 596 EAPDK-----------------DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLT 657 (852)
T ss_dssp CCCCT-----------------HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred CCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
T ss_conf 88761-----------------19999999997899987476998836771899999983899-8449999999999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998089999997999999999999999998109919999999999999999839999998899999999999998
Q 001791 742 RSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVDEIKQVITA 821 (1012)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~l~~ 821 (1012)
..+ +..+..+++.++|.+.+.+..
T Consensus 658 ~~~-------------~~~~~~~l~~~lp~l~~~l~~------------------------------------------- 681 (852)
T 4fdd_A 658 KAC-------------FQHVKPCIADFMPILGTNLNP------------------------------------------- 681 (852)
T ss_dssp HHC-------------GGGTGGGHHHHHHHHHHTCCT-------------------------------------------
T ss_pred HHH-------------HHHHHHHHHHHHHHHHHHCCC-------------------------------------------
T ss_conf 981-------------688898799999999987694-------------------------------------------
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC-CCCHHHHH
Q ss_conf 89769999997306689978756745544659999999999999999980003135498988757542159-99998999
Q 001791 822 SSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGK-DKTAEERR 900 (1012)
Q Consensus 822 ~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~-~~~~~~~~ 900 (1012)
.+..++.+++.+++.++...|..+.|++..+++.+...++. +....++.
T Consensus 682 ------------------------------~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~ 731 (852)
T 4fdd_A 682 ------------------------------EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLE 731 (852)
T ss_dssp ------------------------------TSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHH
T ss_pred ------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf ------------------------------20689999999999999971176787899999999998579988720778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9999799998772165675257489999955369-9935888878999999853177628999999999998
Q 001791 901 IAICIFDDVAEQCREAALKYYETYLPFLLEACND-ENQDVRQAAVYGLGVCAEFGGSVVKPLVGEALSRLNV 971 (1012)
Q Consensus 901 ~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~ 971 (1012)
.+..++|.+...++..+.|+++++++.+...|.+ .|.+.|..|+.+++.++...+..+.+.+..+...+..
T Consensus 732 ~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~ 803 (852)
T 4fdd_A 732 NTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVAS 803 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 899999999986889767558999999999865366607999999999999986918688889999999870
No 9
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=363.52 Aligned_cols=720 Identities=14% Similarity=0.182 Sum_probs=483.8
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99906899999993399938879999999886512924899999999806999779998999999750358887455789
Q 001791 18 GPDSAPFETLISHLMSTSNEQRSEAELLFNLCKQQDPDSLTLKLAHLLQRSPHPEARAMAAVLLRKLLTRDDSFLWPRLS 97 (1012)
Q Consensus 18 ~~d~~~l~~ll~~~~s~d~~~r~~A~~~L~~~~~~~p~~~~~~L~~il~~~~~~~vr~~a~~~L~~~i~~~~~~~w~~~~ 97 (1012)
.||.+++.+++..+++|+++.|++|+++|+++++ +|+.+ ..+.+++.++.++.+|++|++.|++.++++ |..++
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p~~~-~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~----W~~l~ 85 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPDAW-QKADQILQFSTNPQSKFIALSILDKLITRK----WKLLP 85 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-STTGG-GGHHHHHHHCSCHHHHHHHHHHHHHHHHHT----GGGSC
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-CCHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----CCCCC
T ss_conf 4659999999999868993899999999999883-95699-999999862998899999999999999760----70499
Q ss_pred HHHHHHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 8789999999989995152--------27699999999999984216999920279999995029987778999999999
Q 001791 98 LHTQSSLKSMLLQSIQLES--------AKSISKKLCDTVSELASNILPENGWPELLPFMFQCVSSDSVKLQESAFLIFAQ 169 (1012)
Q Consensus 98 ~~~~~~i~~~ll~~l~~~~--------~~~vr~~~~~~l~~i~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~al~~l~~ 169 (1012)
++.+..||+.+++.+.+.+ +..+|+.++.+++.|+++++| +.||++++.+.+.++ ++...++.++.++..
T Consensus 86 ~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~ 163 (1049)
T 3m1i_C 86 NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKL 163 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_conf 999999999999999862776200000289999999999999997681-115479999999871-585889999999999
Q ss_pred HHHHHHH----------------HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHH-----------
Q ss_conf 3666752----------------2000099999999985369999589999999999999830691128-----------
Q 001791 170 LSQYIGD----------------TLTPHLKHLHAVFLNCLTNSNNPDVKIAALNAVINFIQCLTSSADR----------- 222 (1012)
Q Consensus 170 l~~~~~~----------------~~~~~~~~l~~~l~~~l~~~~~~~vr~~a~~~l~~~~~~~~~~~~~----------- 222 (1012)
+++.+.+ .+...++.+++.+.+++.+..+..++..+++|+..++.+.+.....
T Consensus 164 l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~ 243 (1049)
T 3m1i_C 164 LSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTK 243 (1049)
T ss_dssp HHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999872600132689999999999999999999999998668889999999999999860889988605599999998
Q ss_pred -------------------------------HHHHHHHHHHHHHHHH-----------HH---HCCCHHHHHHHHHHHHH
Q ss_conf -------------------------------6797469999999999-----------98---36996789999999999
Q 001791 223 -------------------------------DRFQDLLPLMMRTLTE-----------SL---NNGNEATAQEALELLIE 257 (1012)
Q Consensus 223 -------------------------------~~~~~~~~~il~~l~~-----------~l---~~~~~~~~~~a~~~L~~ 257 (1012)
..+..+++.++..+.. .. .+.+.+.....++++..
T Consensus 244 ~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 244 FMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp HHHSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 68987679999999999994889950346889999999999999988627985417877445771028999999999999
Q ss_pred HHCCCHHHH------HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHC
Q ss_conf 872113989------99499999999996426875357899999999999872101531220143469999999999625
Q 001791 258 LAGTEPRFL------RRQLVDVVGSMLQIAEAESLEEGTRHLAIEFVITLAEARERAPGMMRKLPQFINRLFAILMSMLL 331 (1012)
Q Consensus 258 l~~~~~~~~------~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ 331 (1012)
+.+.+...+ .+++..+++.++.+... .++.++..++++|..+++.-...+.......+++..+++.++..|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~--~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~ 401 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKI--EERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMV 401 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999828821479999999999998868--9089999999999999999974635899999999999999998658
Q ss_pred CCCCCCCCCCCCCC------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCHHHHHHHHHHHHH
Q ss_conf 67998454578998------755467761106999999999772997434778877988427--9896589999999999
Q 001791 332 DIEDDPLWHSAETE------DEDAGESSNYSVGQECLDRLAIALGGNTIVPVASEQLPAYLA--APEWQKHHAALIALAQ 403 (1012)
Q Consensus 332 ~~~~~~~~~~~~~~------~ed~~~~~~~~~a~~~l~~l~~~~~~~~~~~~il~~l~~~l~--s~~~~~r~aal~~l~~ 403 (1012)
+.+ +.+|..+++. .+|+++++.++++..++..++...+ ..+++.+.+.+.+.+. +.+|+.|+++++++|.
T Consensus 402 ~~e-d~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algs 479 (1049)
T 3m1i_C 402 RPE-EVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGS 479 (1049)
T ss_dssp CCT-TCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCC-CEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 996-20000579985048653122279999999999999883698-9999999999998727787898999999999999
Q ss_pred HHHHCHHHH-HHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 993338999-9829999999984179-----9886599999999998664320558863244158999951379999579
Q 001791 404 IAEGCAKVM-VKNLEQVLSMVLNSFR-----DPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRV 477 (1012)
Q Consensus 404 l~~~~~~~~-~~~l~~ii~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v 477 (1012)
+++++.... ..+++.+++.+..... ++++.+|..+++++|++++++.... .+++.+++.++..+.+ +++.|
T Consensus 480 ia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~-~~~~V 556 (1049)
T 3m1i_C 480 ISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHE-THEGV 556 (1049)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTS-SCHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCC-CCHHH
T ss_conf 86023762557999999999998776543566549999889999997799998678--9999999999998618-98789
Q ss_pred HHHHHHHHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 9999999999860189654-------337479999999998623875499999999999999827--6458547445688
Q 001791 478 QAHAASAVLNFSENCTPEI-------LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ--EHFQKYYDAVMPF 548 (1012)
Q Consensus 478 ~~~a~~~l~~l~~~~~~~~-------l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~--~~~~~~~~~il~~ 548 (1012)
+..||.++..+++.++... +.||++.++..+...+...+.......+++++.++...+ +...+|+..+++.
T Consensus 557 ~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~ 636 (1049)
T 3m1i_C 557 QDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQL 636 (1049)
T ss_dssp HHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999889861156778775799999989999985899999999999999997599789999999999988
Q ss_pred HHHHHHHCC--------CCCCC---HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC------------CC-C
Q ss_conf 999996106--------63210---025799999999996417332255499999999998358------------89-9
Q 001791 549 LKAILVNAT--------DKSNR---MLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGS------------QM-E 604 (1012)
Q Consensus 549 l~~~l~~~~--------~~~~~---~lr~~a~~~l~~i~~~~~~~~~~~~~~~i~~~l~~l~~~------------~~-~ 604 (1012)
+.+.|.... +..+. ..-...+.|++.++.++| ..|.|++..++.-++.+... +. .
T Consensus 637 ~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~-~~f~p~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~ 715 (1049)
T 3m1i_C 637 PNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG-ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIA 715 (1049)
T ss_dssp HHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999873164640487999999999999999999856-788999999999999999999998999997058502
Q ss_pred CCCC-------HHHHHHHHHHHHHHHH---CCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 9970-------2379999999999880---37842313663599999704599822247898765457887541022028
Q 001791 605 TDDP-------TTSYMLQAWARLCKCL---GQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDNEIEDSDDDSMETITLG 674 (1012)
Q Consensus 605 ~~~~-------~~~~~~~~~~~l~~~~---~~~~~~~l~~ii~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (1012)
...+ ....+...+..+.... +..+.||++.++..++..... +....
T Consensus 716 ~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~-~~~~~----------------------- 771 (1049)
T 3m1i_C 716 TKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMN-NVPDA----------------------- 771 (1049)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHH-SCGGG-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-CCCCC-----------------------
T ss_conf 210889999999999999999999847977999998789999999998871-89632-----------------------
Q ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC----C--CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 90355302169989999999999999940015331998898760024----7--65897799999985999999999999
Q 001791 675 DKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLL----K--FYFHEEVRKAAVSAMPELLRSAKLAI 748 (1012)
Q Consensus 675 ~~~~~v~~~~~~~k~~a~~~l~~i~~~~~~~~~p~~~~~~~~l~~~l----~--~~~~~~vr~~a~~~l~~l~~~~~~~~ 748 (1012)
+. ...+.+++.++...+..+.||++.+++.+.... . ...++++|...+..++.++..+....
T Consensus 772 ------~~------~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l 839 (1049)
T 3m1i_C 772 ------RD------AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAF 839 (1049)
T ss_dssp ------CC------THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHH
T ss_pred ------CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf ------36------879999999999988760666899999999999999852421089999999999999998678999
Q ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 808999999799999999999999999810991999999999999999983
Q 001791 749 EKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQIS 799 (1012)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 799 (1012)
-. ..+.. ...++...+.++. .+++.+....+..+.+++...
T Consensus 840 ~~-----~~~~~----~~~v~~~~~~al~-~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 840 LE-----LPPAA----FKLFVDAICWAFK-HNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp HH-----SCHHH----HHHHHHHHHHHHT-CCSHHHHHHHHHHHHHHHHHH
T ss_pred HC-----CCHHH----HHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHH
T ss_conf 75-----99999----9999999999947-998169999999999999998
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=357.30 Aligned_cols=785 Identities=14% Similarity=0.150 Sum_probs=526.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHCCCC------CCC
Q ss_conf 999779998999999750358887455789878999999998999515-2276999999999999842169------999
Q 001791 68 SPHPEARAMAAVLLRKLLTRDDSFLWPRLSLHTQSSLKSMLLQSIQLE-SAKSISKKLCDTVSELASNILP------ENG 140 (1012)
Q Consensus 68 ~~~~~vr~~a~~~L~~~i~~~~~~~w~~~~~~~~~~i~~~ll~~l~~~-~~~~vr~~~~~~l~~i~~~~~~------~~~ 140 (1012)
+.++.+|+.|...|++. . .+....+...|++.+.++ .+..+|..++..+...+....+ .+.
T Consensus 12 s~d~~~r~~A~~~L~~~---------~---~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 12 SPDRLELEAAQKFLERA---------A---VENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CSCHHHHHHHHHHHHHH---------H---HHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH---------H---HCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 98989999999999998---------7---16804699999999857899879999999999876055434767899864
Q ss_pred CCHHHHH--------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHH
Q ss_conf 2027999--------99950299877789999999993666752200009999999998536999-95899999999999
Q 001791 141 WPELLPF--------MFQCVSSDSVKLQESAFLIFAQLSQYIGDTLTPHLKHLHAVFLNCLTNSN-NPDVKIAALNAVIN 211 (1012)
Q Consensus 141 ~~~ll~~--------l~~~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~vr~~a~~~l~~ 211 (1012)
|+.+.+. +++.+.+++... ..+..+++.++..... ...++.+++.+.+.+.++. ++.+|..+++++..
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~--~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIP--VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGG--GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 406999999999999999867994788-9999999999984676--2256889999999870889879999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHCCCHHHHHHH--HHHHHHHHHHHHCCCCCC
Q ss_conf 99830691128679746999999999998369--96789999999999872113989994--999999999964268753
Q 001791 212 FIQCLTSSADRDRFQDLLPLMMRTLTESLNNG--NEATAQEALELLIELAGTEPRFLRRQ--LVDVVGSMLQIAEAESLE 287 (1012)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~ 287 (1012)
++.... .+.+...++.+++.+...+.++ +..+|..+++++..++...+..+... ...+++.+.... .+.+
T Consensus 157 l~~~~~----~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~--~~~~ 230 (876)
T 1qgr_A 157 ICQDID----PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT--QCPD 230 (876)
T ss_dssp HHHHSC----HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT--TCSS
T ss_pred HHHHCC----HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCC
T ss_conf 987458----7667867999999999861679998899999999999999999998871789999999999871--7998
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHH-HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 578999999999998721015312201434699-9999999962567998454578998755467761106999999999
Q 001791 288 EGTRHLAIEFVITLAEARERAPGMMRKLPQFIN-RLFAILMSMLLDIEDDPLWHSAETEDEDAGESSNYSVGQECLDRLA 366 (1012)
Q Consensus 288 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~ed~~~~~~~~~a~~~l~~l~ 366 (1012)
..+|..+++++..+++. .+. .+.+++. .+++.++..+.+. +...+..+..++..++
T Consensus 231 ~~vr~~a~~~l~~l~~~---~~~---~~~~~~~~~l~~~~~~~~~~~-----------------~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 231 TRVRVAALQNLVKIMSL---YYQ---YMETYMGPALFAITIEAMKSD-----------------IDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHHHHHHHHHHHH---SGG---GCHHHHTTTHHHHHHHHHTCS-----------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHHH
T ss_conf 89999999999999998---699---999887789999999996387-----------------3499999999999998
Q ss_pred HHC-------------------CCCC----CHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHCHHHHHHHH
Q ss_conf 772-------------------9974----34778877988427-------98965899999999999933389999829
Q 001791 367 IAL-------------------GGNT----IVPVASEQLPAYLA-------APEWQKHHAALIALAQIAEGCAKVMVKNL 416 (1012)
Q Consensus 367 ~~~-------------------~~~~----~~~~il~~l~~~l~-------s~~~~~r~aal~~l~~l~~~~~~~~~~~l 416 (1012)
... +... .+..+++.+.+.+. +.+|.+|.++..+++.++...++ ..+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~ 364 (876)
T 1qgr_A 288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV 364 (876)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCH---HHH
T ss_conf 87876766510011247775420189999989887079998753133444545217999999999999987758---669
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999998417998865999999999986643205588632441589999513799995799999999999860189654
Q 001791 417 EQVLSMVLNSFRDPHPRVRWAAINAIGQLSTDLGPDLQNQFHPQVLPALAGAMDDFQNPRVQAHAASAVLNFSENCTPEI 496 (1012)
Q Consensus 417 ~~ii~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~il~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~ 496 (1012)
+.+++.+...+.++++.+|.+|+++++.++...++....++.+.++|.++..++| +++.||..|+++++.++...+...
T Consensus 365 ~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~ 443 (876)
T 1qgr_A 365 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAA 443 (876)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHCCHHC
T ss_conf 9999999988469982899999999999974887778999999999999998679-978999999999999998572011
Q ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf -3374799999999986238754999999999999998276458547445688999996106632100257999999999
Q 001791 497 -LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDAVMPFLKAILVNATDKSNRMLRAKSMECISLV 575 (1012)
Q Consensus 497 -l~~~~~~il~~l~~~l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~il~~l~~~l~~~~~~~~~~lr~~a~~~l~~i 575 (1012)
..++++.+++.++..+.+. ..++..++.+++.++...++.. . . .+++ .
T Consensus 444 ~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~--~------------~--~~~~---~----------- 492 (876)
T 1qgr_A 444 INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAA--D------------V--ADDQ---E----------- 492 (876)
T ss_dssp SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTT--S------------C--TTSC---C-----------
T ss_pred CCHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCC--C------------C--CCCC---C-----------
T ss_conf 44777999999999987588-8899999999999999850201--2------------3--4444---5-----------
Q ss_pred HHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 96417332255499999999998358899997023799999999998803784231366359999970459982224789
Q 001791 576 GMAVGKDKFRDDAKQVMEVLMSLQGSQMETDDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSAD 655 (1012)
Q Consensus 576 ~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ii~~ll~~~~~~~~~~~~~~~ 655 (1012)
....+.+.||++.+++.++......-..+..++..++.+++.++...|.++.+|++.+++.+++.+...-.. +..
T Consensus 493 --~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~ 567 (876)
T 1qgr_A 493 --EPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQM---ESH 567 (876)
T ss_dssp --CCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTT---TTS
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH---HHC
T ss_conf --554032157699999999999727674204699999999999999774311899999999999999999988---712
Q ss_pred CCCCCCCCCCCCCCHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHCCCCCCCCC-HHHHHHH
Q ss_conf 876545788754102202890355302169989999999999999940-01533199889876002476589-7799999
Q 001791 656 SDNEIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELK-EGFFPWIDQVAPTLVPLLKFYFH-EEVRKAA 733 (1012)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~k~~a~~~l~~i~~~~~-~~~~p~~~~~~~~l~~~l~~~~~-~~vr~~a 733 (1012)
.. .+++ +....+.+..++.+++.++..++ ..+.||++.+++.++..+..... ..+|..+
T Consensus 568 ----~~--~~~d-------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a 628 (876)
T 1qgr_A 568 ----IQ--STSD-------------RIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDA 628 (876)
T ss_dssp ----CC--STTH-------------HHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHH
T ss_pred ----CC--CHHH-------------HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf ----48--8635-------------9999999999999999999982854205789999999999998536888850899
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 98599999999999980899999979999999999999999981099199999999999999998399999988999999
Q 001791 734 VSAMPELLRSAKLAIEKGLAPGRNESYVKQLSDFIIPALVEALHKEPDTEICASMLDSLNECIQISGPLLDEGQVRSIVD 813 (1012)
Q Consensus 734 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 813 (1012)
+.+++.++...+ ....+++..++|.+...+.+..+..++...+.+++.+...+|..+ .+++..+++
T Consensus 629 ~~~l~~l~~~~~-------------~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~i~~ 694 (876)
T 1qgr_A 629 LMAVSTLVEVLG-------------GEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI-IPFCDEVMQ 694 (876)
T ss_dssp HHHHHHHHHHHG-------------GGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 999999999987-------------609999999999999987586508799999999999999887854-645999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 99999998897699999973066899787567455446599999999999999999800031354989887575421599
Q 001791 814 EIKQVITASSSRKRERAERAKAEDFDAEESELIKEENEQEEEVFDQVGEILGTLIKTFKAAFLPFFDELSSYLTPMWGKD 893 (1012)
Q Consensus 814 ~l~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~e~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~~~ 893 (1012)
.+...+.. .+ .+..++..+..+++.++...|+.|.++++.++|.+...+..+
T Consensus 695 ~l~~~l~~--------------~~--------------~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 695 LLLENLGN--------------EN--------------VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHHHHTC--------------TT--------------SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCC
T ss_pred HHHHHHCC--------------CC--------------CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99997487--------------12--------------338763999999999999703527999999999999998555
Q ss_pred C---C-------HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHH
Q ss_conf 9---9-------98999999979999877216----------56752574899999553699--9358888789999998
Q 001791 894 K---T-------AEERRIAICIFDDVAEQCRE----------AALKYYETYLPFLLEACNDE--NQDVRQAAVYGLGVCA 951 (1012)
Q Consensus 894 ~---~-------~~~~~~~~~~l~~l~~~~~~----------~~~~~~~~l~~~~~~~l~~~--~~~vr~~a~~~lg~l~ 951 (1012)
. + ...|..++.+++.+++..+. .+.||++.+++.+.....++ +..+|..|+.++|.++
T Consensus 747 ~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 747 VDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 89997588999999999999999999999745755555438899999999999999986588888899999999999999
Q ss_pred HHCCC-CHHHH-HHHHHHHHHH-HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 53177-62899-9999999998-52599878800024678999999999867469
Q 001791 952 EFGGS-VVKPL-VGEALSRLNV-VIRHPNALQPENLMAYDNAVSALGKICQFHRD 1003 (1012)
Q Consensus 952 ~~~~~-~~~~~-~~~il~~L~~-~l~~~~~~~~~~~~~~~na~~~~~~l~~~~~~ 1003 (1012)
...+. .+.++ ...+++.|.. .+.++ +..+|.+|+.|+|.+....++
T Consensus 827 ~~~~~~~~~~~~~~~~i~~ll~~~l~~~------~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 827 TAFGKDVLKLVEARPMIHELLTEGRRSK------TNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp HHHCTHHHHHHHTSHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCHHHHHHHHCHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHCC
T ss_conf 8828488999970489999999875468------876899999999999975347
Done!