Query 001792
Match_columns 1012
No_of_seqs 232 out of 442
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 16:17:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001792.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1089-1092//hhsearch_pdb/001792hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msw_D DNA-directed RNA polyme 1.0 1 1 1778.6 56.5 800 166-1012 19-883 (883)
2 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 1695.3 58.4 787 171-1012 296-1134(1134)
3 3q23_A Virion RNA polymerase; 1.0 1 1 72.1 13.3 483 486-986 337-1004(1118)
4 4dfk_A DNA polymerase I, therm 1.0 1 1 25.7 5.5 210 691-968 301-518 (540)
5 2kfn_A Klenow fragment of DNA 1.0 1 1 24.8 5.9 211 690-968 364-584 (605)
6 1bgx_T TAQ DNA polymerase; DNA 1.0 1 1 21.8 6.0 197 708-968 605-810 (832)
7 3pv8_A DNA polymerase I; DNA p 1.0 1 1 21.3 2.5 199 707-968 363-571 (592)
8 1x9m_A DNA polymerase; DNA plo 1.0 1 1 15.9 5.8 186 701-968 460-674 (698)
9 1d2v_A Myeloperoxidase; heme-p 1.0 1 1 15.2 0.0 11 711-721 9-19 (104)
10 1nu0_A Hypothetical protein YQ 1.0 1 1 14.3 1.2 18 700-717 53-70 (138)
No 1
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=1.00 E-value=1 Score=1778.58 Aligned_cols=800 Identities=28% Similarity=0.460 Sum_probs=700.9
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 98665288789-999999999999999999999999999997004999716999999989989999999999976-1047
Q 001792 166 EYREMKKRKFN-LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR-TKKQ 243 (1012)
Q Consensus 166 ~~~~~~~~~~~-~l~eRQ~~lE~~~~~~a~~r~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~-~~~~ 243 (1012)
+-++.-...|+ .|++||++||++++++|++||++..++++++|+++++|++++++.+|+++|+++|+++++..+ +.|.
T Consensus 19 ~~~~~~~~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~ 98 (883)
T 1msw_D 19 IPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGK 98 (883)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88999999866799999999999999999999999999999658856772659999999999999999999988503676
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42301332059936799999999998773279888524999999999999999999999998312321121123478788
Q 001792 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323 (1012)
Q Consensus 244 r~~y~p~L~~L~pe~lA~Iti~~ll~~~~~~~~~~~~~~~~~a~~IG~aVe~E~~~~~~~~k~~~~~~~~~~~~~~~~~~ 323 (1012)
++.|+|||++++||++|+|||+++|+++++ .+++++++++.+||++||+|++++++.++.++++.+..
T Consensus 99 ~~~~~~~L~~l~~e~lA~iti~~~l~~~~~---~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~~~--------- 166 (883)
T 1msw_D 99 RPTAFQFLQEIKPEAVAYITIKTTLACLTS---ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKNV--------- 166 (883)
T ss_dssp CCTTTTTTTSSCHHHHHHHHHHHHHHHHHH---CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHT---------
T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 057899997189999999999999987454---68866999999999999999999999997567899999---------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-C-----CCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999887787777799999863-1-----78999999889999999999999987-15027899999999975673
Q 001792 324 KEKELLRKRVNSLIKSKRVMEAQKLL-K-----NEETKPWGRDTQAKLGSRLVELLIET-AYVQHPVNPADYSPPDVRPA 396 (1012)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~W~~~~~~kvG~~Li~~L~e~-~~i~~~~~~~~~~~~~~~pa 396 (1012)
.+.++++.+...++...+.+.... + ++++.+|+..++++||++|+++|+++ ++++++...
T Consensus 167 --~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~~----------- 233 (883)
T 1msw_D 167 --EEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQN----------- 233 (883)
T ss_dssp --SHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC------------
T ss_pred --HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCC-----------
T ss_conf --9998750037999999999999865315556677789998999999999999999865876310045-----------
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHH---HCCCCCCCCEEECCCCCCCCCCCEECCC---CCCCEECCC
Q ss_conf 3676554322799876506899963988999997410---0025899960208988757998210015---764043279
Q 001792 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA---KHMLIPYVPMLVPPKKWKGYNKGGYLFL---PSYVMRTHG 470 (1012)
Q Consensus 397 F~h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYl~~---~~~i~R~~~ 470 (1012)
.|. .++++|+|++|+.+++.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|+..
T Consensus 234 -----------~~~-~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~ 301 (883)
T 1msw_D 234 -----------AGV-VGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS 301 (883)
T ss_dssp -------------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS
T ss_pred -----------CCC-CCCEEEEEEECHHHHHHHHHCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf -----------677-77513699848999999864111123307777852517844787999875377766312200267
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHH
Q ss_conf 5778999983004574789999975168306874879999999997-199878877887888999999989--8899999
Q 001792 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV-SGGNIAGLVDRNDVLIPEKPLSED--MTEVQKW 547 (1012)
Q Consensus 471 s~~q~~~l~~~~~~~l~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~~d--~~~~~~w 547 (1012)
. .++++....+++.||++||+||+|||+||++||+|++++|+ +|+++++||+..+.|+|++|++.+ ++++++|
T Consensus 302 ~----~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~ 377 (883)
T 1msw_D 302 K----KALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAW 377 (883)
T ss_dssp T----THHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCT
T ss_pred H----HHHHHCCCCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 8----888741222268999999986148847559999999999965399506889867677999987554488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf 99999999999995553432457999999605998222024678888535799999988721000323223586678120
Q 001792 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627 (1012)
Q Consensus 548 k~~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Ypi~~~Ln~qGsDl~RsLL~FaegkpLG~~G 627 (1012)
++.++.+++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++|
T Consensus 378 k~~~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~G 456 (883)
T 1msw_D 378 KRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEG 456 (883)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999999999999999999999999835898487115667788688887-87988646888999864688668028
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 57999999772079977899888999999769999972039988833552189958899999999998724999852004
Q 001792 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707 (1012)
Q Consensus 628 l~WLkIhlAN~~G~G~DK~S~deRi~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfLA~C~El~~a~~s~~P~~y~S~ 707 (1012)
++|||||+||+| |+||+||+||++||++|+++|++||+||++ .+||++||+||||||+|+||++|+++|+ +|+||
T Consensus 457 l~WLkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~ 531 (883)
T 1msw_D 457 YYWLKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCS 531 (883)
T ss_dssp HHHHHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEEC
T ss_pred HHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHCCCCHHHHHHHHHHHHHHHHCCC--CCCCC
T ss_conf 999999998862--887689899999999979999998509654-3577717868999999999999984788--65225
Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC------C------------
Q ss_conf 5645578871346899720896222012657789864035599999999997410899999------8------------
Q 001792 708 LPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK------H------------ 769 (1012)
Q Consensus 708 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~------~------------ 769 (1012)
+||||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|+..|... +
T Consensus 532 lPVhqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~ 611 (883)
T 1msw_D 532 LPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKL 611 (883)
T ss_dssp CCEEEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 64456787738999999714764456727799998765689999999999999985165321124444211121011022
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -16899999520265222234003210165223079999999877489998----4658899889999999999999998
Q 001792 770 -PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITD----DRQLFAAACYAAKVTLTALGEIFEA 844 (1012)
Q Consensus 770 -~~~~~ak~L~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d----~~~~~~~a~Ylak~v~~ai~e~f~~ 844 (1012)
.....+++|.++|+||+|||||||+|||||++|+++||.++|+++++..+ -.....+++|+|+++|++|+++|++
T Consensus 612 ~~~~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~ 691 (883)
T 1msw_D 612 GTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 691 (883)
T ss_dssp CHHHHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11679999984688887732440652007850506999999986530134532232244689999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHCC------------CCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEE---EECCC---CCCCH
Q ss_conf 999999999999999818------------9958997489991887412586635886359999---95279---85655
Q 001792 845 ARSIMGWLGDCAKVIASE------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA---LQREG---NLVEI 906 (1012)
Q Consensus 845 A~~im~WL~~~A~~i~~~------------~~pV~WtTPlGlpVvQ~Y~k~~~~~V~t~lq~i~---l~~~~---d~vd~ 906 (1012)
|+.||+||++||++|+++ +.||.|+||+||||+|||++.+.++|+|.+|... +..+. +++|+
T Consensus 692 a~~im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~t~l~~~~~i~l~~~~~~~~~~d~ 771 (883)
T 1msw_D 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDA 771 (883)
T ss_dssp HHHHHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCCH
T ss_conf 99999999999999986301122100146898289989999888777057874688776413035753115554454566
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHC-CC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 553106999520224369999999998564-99-498840443579899468999999999976092-248889999997
Q 001792 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDA-GL-HFAGVHDSFWTHACDVDEMNQILRKKFVELYNM-PMLENLLESFQT 983 (1012)
Q Consensus 907 rKq~~Af~PNFIHSLDAsHmmlta~~~~~~-Gi-~FasVHDSFwThA~dvd~M~~ilRe~FV~Lys~-~il~~l~e~f~~ 983 (1012)
+||++||||||||||||||||||+++|.+. |+ +|++|||||||||||||.|+++|||+||+||++ |+|++|.++|..
T Consensus 772 ~Kq~~af~PNFIHSLDAsHmmlta~~~~~~~gl~~fa~VHDsfwTha~dvd~m~~~lRe~FV~lys~~~~L~~l~~~~~~ 851 (883)
T 1msw_D 772 HKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFAD 851 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 77751778636756889999999999998559976578711666777549999999999999986389799999999998
Q ss_pred HCCC---CCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 4899---9899999788889010004788889
Q 001792 984 SYPT---LSFPPLPERGNFDLEEVLESPYFFN 1012 (1012)
Q Consensus 984 ~~~~---~~~p~~P~~G~LDL~~Vl~S~YFF~ 1012 (1012)
+|+. .+||++|++|+|||++|++|+|||+
T Consensus 852 ~~~~~~~~~~p~~P~~G~ldl~~Vl~S~YfFs 883 (883)
T 1msw_D 852 QLHESQLDKMPALPAKGNLNLRDILESDFAFA 883 (883)
T ss_dssp TTTCTTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred HCCHHHHHCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 65603332278998889979999966877779
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=1695.30 Aligned_cols=787 Identities=35% Similarity=0.619 Sum_probs=679.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH------H------HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 28878999999999999999------9------99999999999999700499971699999998998999999999997
Q 001792 171 KKRKFNLLRRRQVKQETEAW------E------RMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQ 238 (1012)
Q Consensus 171 ~~~~~~~l~eRQ~~lE~~~~------~------~a~~r~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~ 238 (1012)
+....+.+.+.|+.+|..+. + ..+..+|+. +..+..+|...|..+|+++....
T Consensus 296 ~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~~---------------l~~~~~~w~~~l~~~~~~~~~~~ 360 (1134)
T 3spa_A 296 PLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKT---------------LKTLRDQWEKALCRALRETKNRL 360 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999874705776234578887899999999---------------99999999999999999999999
Q ss_pred H--HCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6--10474230133205993679999999999877327988852499999999999999999999999831232112112
Q 001792 239 R--TKKQKAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIA 316 (1012)
Q Consensus 239 ~--~~~~r~~y~p~L~~L~pe~lA~Iti~~ll~~~~~~~~~~~~~~~~~a~~IG~aVe~E~~~~~~~~k~~~~~~~~~~~ 316 (1012)
. ....+..++|||+.|+.+.++.|.|.++..+..+ |..++.++..||..|++++.+++-...+.
T Consensus 361 ~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~l~~~-----g~~~~~~~~~lg~~~~~~~~~~~~~~~~~--------- 426 (1134)
T 3spa_A 361 EREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQ-----GESFTTLARELSARTFSRHVVQRQRVSGQ--------- 426 (1134)
T ss_dssp HHHHHTTCCCSTGGGGSSCHHHHHHHHHHHHHHCCTT-----CEEHHHHHHHHHHHHHHHHHHHHHHHHTH---------
T ss_pred HHHHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_conf 9762258976011013478899999999999986616-----74099999999999999999999986148---------
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 34787889999999988778----------777779999986317--899999988999999999999998715027899
Q 001792 317 DTEEVLSKEKELLRKRVNSL----------IKSKRVMEAQKLLKN--EETKPWGRDTQAKLGSRLVELLIETAYVQHPVN 384 (1012)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~W~~~~~~kvG~~Li~~L~e~~~i~~~~~ 384 (1012)
+.+..+.+.+...-+ ..+ ..|+.+... ..+.+|+..++++||++|+++|+++++|.+...
T Consensus 427 -----~~~~~~~y~~y~~~~~~~~~~~~~~~~r---~~w~~l~~~~~~~~~~W~~~~~~kvG~~Ll~~L~~~~~i~~~~~ 498 (1134)
T 3spa_A 427 -----VQALQNHYRKYLCLLASDAEVPEPCLPR---QYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLD 498 (1134)
T ss_dssp -----HHHHHHHHHHHGGGTCSSCCCSSCCCHH---HHHHHHHCCCCGGGCCCCHHHHHHHHHHHHHHHHHHCBCCC---
T ss_pred -----HHHHHHHHHHHHHHHHCCCCCCCCCCHH---HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf -----9999999999999981488557778859---99997388656889998989999999999999986544875255
Q ss_pred CCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHC---CCCCCCCEEECCCCCCCCCCCEECCC
Q ss_conf 999999975673367655432279987650689996398899999741000---25899960208988757998210015
Q 001792 385 PADYSPPDVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH---MLIPYVPMLVPPKKWKGYNKGGYLFL 461 (1012)
Q Consensus 385 ~~~~~~~~~~paF~h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~~~---~~~~~lPMlvpP~pW~~~~~GGYl~~ 461 (1012)
.+ ++....+|||+|+|++. . ++++|+|++||.+.+.+++.... +.+.++||||||+||+++++||||+.
T Consensus 499 ~~-~~~~~~~paf~h~y~~~---~----~~~~G~i~~hp~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~ 570 (1134)
T 3spa_A 499 KP-HRSSRLVPVLYHVYSFR---N----VQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLS 570 (1134)
T ss_dssp ---------CBSEEEEEC-----------CCCEEEEECHHHHHHHHHHTCSEEEEEGGGSCBSSCCEEEEETTEEESSSS
T ss_pred CC-CCCCCCCCCEEEEEEEE---C----CCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 88-98766543127899997---3----7188999989999999973354222257677874049988888788515730
Q ss_pred CCCCEECCCCHHH-HHHHHHCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHC-CCCCCCCCCCC-CCCCCC---C
Q ss_conf 7640432795778-9999830045747899999751683068748799999999971-99878877887-888999---9
Q 001792 462 PSYVMRTHGSRKQ-QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS-GGNIAGLVDRN-DVLIPE---K 535 (1012)
Q Consensus 462 ~~~i~R~~~s~~q-~~~l~~~~~~~l~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~~-g~~i~~l~~~~-~~p~P~---~ 535 (1012)
++.+||+++...| ...+++...++|+.||++||+||+|||+||++||+|+.++|++ |+++.++|+.. +.|.|+ .
T Consensus 571 ~t~~mR~~~~~~q~~~~l~~~~~~~l~~v~~aLN~Lg~t~W~IN~~VLdVv~~vw~~~G~~~~~iP~~~~~~p~~p~~~~ 650 (1134)
T 3spa_A 571 PTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHL 650 (1134)
T ss_dssp CCCSBCCCTTHHHHHHHHHSSCGGGGHHHHHHHHHHHTCEEEECHHHHHHHHHHHTTTCBGGGTBCCCC-----------
T ss_pred CCCEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76536568876889999973560123899999998708996863999999999998469974787998544689987789
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99989889999999999999999995553432457999999605998222024678888535799999988721000323
Q 001792 536 PLSEDMTEVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVL 615 (1012)
Q Consensus 536 p~~~d~~~~~~wk~~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Ypi~~~Ln~qGsDl~RsLL 615 (1012)
|.+.++++.++|+++.+..++.++++||+||+++|+|++|++|+|+ .||||||+|||||+||+||||||||+|++||||
T Consensus 651 ~~~~~~~~~~~~kr~~~~~~~~~~~~~S~Rc~~~~kL~iA~~f~~~-~fYfPhnlDFRGR~Yp~~p~LnhqGsDl~RsLL 729 (1134)
T 3spa_A 651 PHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDR-VFWLPHNMDFRGRTYPCPPHFNHLGSDVARALL 729 (1134)
T ss_dssp -----------------------CTHHHHHHHHHHHHHHHHHHTTS-CEECCEEECTTCCEEESCSSSCSCSSHHHHHTE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9888989999999999999999999861558999999999980677-165133457788576789876856543787888
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 223586678120579999997720799778-9988899999976999997203998883355218995889999999999
Q 001792 616 EFAEGRPLGKSGLRWLKIHLANLFSGGVEK-LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSE 694 (1012)
Q Consensus 616 ~FaegkpLG~~Gl~WLkIhlAN~~G~G~DK-~S~deRi~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfLA~C~El~~ 694 (1012)
+||+|+|||++|++|||||+||+| |+|| .||+||++|+++|+++|++||+||++|.+||++||+||||||+|+||++
T Consensus 730 ~FaegkpLG~~Gl~WLkIhlAN~~--G~dKk~s~~eRi~wv~~n~~~I~dsA~~Pl~g~~wW~~Ad~PwQfLA~C~El~~ 807 (1134)
T 3spa_A 730 EFAQGRPLGPHGLDWLKIHLVNLT--GLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVAN 807 (1134)
T ss_dssp EESSCEECTTTHHHHHHHHHHHHH--SCCTTSCHHHHHHHHHHHHHHHHHHHHCTTTSCCGGGGSSSHHHHHHHHHHHHH
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 844577178550999999999861--987678999999999999999999873966363678737888999999999999
Q ss_pred HHHCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 87249998520045645578871346899720896222012657789864035599999999997410899999816899
Q 001792 695 ALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALL 774 (1012)
Q Consensus 695 a~~s~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~ 774 (1012)
|++++||++|+||+||||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|++++ ..+
T Consensus 808 a~~~~dp~~y~S~lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~------~~~ 881 (1134)
T 3spa_A 808 AVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRV 881 (1134)
T ss_dssp HHTSSSGGGCEECCEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTT------CHH
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC------HHH
T ss_conf 98568974310057556688774899999970686557773878888765078999999999998524337------088
Q ss_pred HHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99952026522223400321016522307999999987748999846588998899999999999999989999999999
Q 001792 775 AKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGD 854 (1012)
Q Consensus 775 ak~L~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~ 854 (1012)
|++|.++|+||+|||||||+|||||++|+++||.++|++.+.++++ ..+.+++|+++++|+||+++|++|+.||+||++
T Consensus 882 a~~l~~~I~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~e~~~~~~~-~~~~~a~Yla~~i~~si~e~f~~a~~im~WL~~ 960 (1134)
T 3spa_A 882 AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTE 960 (1134)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCCSSSHHHHHHHHHHHTCTTSCTT-THHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHCCCCEEEEEECCEEHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9996579883322552277654661020799999999854567667-788999999999999999999989999999999
Q ss_pred HHHHHHCCCCCEEEECCCCCEEEEEECCCCCE-EEEEEEEEEEEECCCC---CCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999818995899748999188741258663-5886359999952798---5655553106999520224369999999
Q 001792 855 CAKVIASENQPVRWTTPLGLPVVQPYCKNERH-LIRTSLQVLALQREGN---LVEIRKQRTAFPPNFVHSLDGSHMMMTA 930 (1012)
Q Consensus 855 ~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~-~V~t~lq~i~l~~~~d---~vd~rKq~~Af~PNFIHSLDAsHmmlta 930 (1012)
||++|++++.||+|+||+||||+|||++..+. .|.+.+|.+++..+++ ++|++||++|||||||||||||||||||
T Consensus 961 ~A~~i~~~~~pV~WtTPlGlpVvQpY~k~~k~~~i~~~~q~v~~~~~~d~~~~~d~~KQ~~afpPNFIHSLDAsHmmlTa 1040 (1134)
T 3spa_A 961 SARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTA 1040 (1134)
T ss_dssp HHHHHHHTTCCCEEECTTSCEEECCCBCC-----------------------CBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEECCCCCEEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99999567997799899998897762677744674178369998546876667787877506796587648899999999
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC------------CCCCCCCCC
Q ss_conf 99856499498840443579899468999999999976092248889999997489998------------999997888
Q 001792 931 VACRDAGLHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLS------------FPPLPERGN 998 (1012)
Q Consensus 931 ~~~~~~Gi~FasVHDSFwThA~dvd~M~~ilRe~FV~Lys~~il~~l~e~f~~~~~~~~------------~p~~P~~G~ 998 (1012)
++|.+.|++|++|||||||||||||.|+++|||+||+|||+|||++|.++|..+|+.+. ||++|++|+
T Consensus 1041 ~~c~~~gi~FasVHDSfwTHA~dvd~M~~ilRe~FV~L~s~~il~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~G~ 1120 (1134)
T 3spa_A 1041 LHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGA 1120 (1134)
T ss_dssp HHHHHTTCCCEEETTEEEEEGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHSCCCCCS
T ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99986799789961165657115899999999999998062579999999999706630222124678864899999997
Q ss_pred CCHHHHCCCCCCCC
Q ss_conf 89010004788889
Q 001792 999 FDLEEVLESPYFFN 1012 (1012)
Q Consensus 999 LDL~~Vl~S~YFF~ 1012 (1012)
|||++|++|+||||
T Consensus 1121 lDL~~Vl~S~YFFs 1134 (1134)
T 3spa_A 1121 FDLEQVKRSTYFFS 1134 (1134)
T ss_dssp CCGGGGGGCTTSCC
T ss_pred CCHHHHHCCCCCCC
T ss_conf 46899846888889
No 3
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=1.00 E-value=1 Score=72.09 Aligned_cols=483 Identities=14% Similarity=0.152 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 478999997516830687487999999999719-9878877887888999999989889999999999999999995553
Q 001792 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG-GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564 (1012)
Q Consensus 486 l~~v~~aLN~Lq~t~WrIN~~VL~vi~~~w~~g-~~i~~l~~~~~~p~P~~p~~~d~~~~~~wk~~~~~~~~~~~~~~S~ 564 (1012)
-+.+-.++...|.+|++||..+..+....-+.+ ..+.|.- ++..| ....+..+.-..+-+.+.+.-.+.+..
T Consensus 337 ~~lqakalkkaQ~q~hrvn~~m~~~~e~LgEDalltmlGa~---~l~~e----~ln~~~RkSlEGKN~sV~rdi~~~~d~ 409 (1118)
T 3q23_A 337 TPEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGAG---TLNKE----LLNDNHAKSLEGKNRSVEDSYNQLFSV 409 (1118)
T ss_dssp CHHHHHHHHHHHHCCBEECHHHHHHHHHHHHHHHHHHHSCC---SCCTT----SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHCCC---CCCCC----CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 89999999986536815555088999985424899972766---46651----010667755410018999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC-CCCC---CCHHHHHHHHHHHHHC
Q ss_conf 43245799999960599822202467888853579999998872100032322358-6678---1205799999977207
Q 001792 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG-RPLG---KSGLRWLKIHLANLFS 640 (1012)
Q Consensus 565 R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Ypi~~~Ln~qGsDl~RsLL~Faeg-kpLG---~~Gl~WLkIhlAN~~G 640 (1012)
++..-++...... -.+|||++|+-=||.=-. .-+|||.+-|.|-++.=++. -.|+ ...++-|+.++|-.+|
T Consensus 410 ---iN~i~e~~~~~~~-vpIyf~y~mtrVGR~qm~-g~~NPQSsKLhRemv~pt~StV~L~~~N~~dm~~FqLgvaQslG 484 (1118)
T 3q23_A 410 ---IEQVRAQSEDIST-VPIHYAYNMTRVGRMQML-GKYNPQSAKLVREAILPTKATLDLSNQNNEDFSAFQLGLAQALD 484 (1118)
T ss_dssp ---HHHHHHHCSCGGG-CCEECCEEECTTSCEEES-SSSSTTTCHHHHTTEESCCEEECCSSTTSHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHCCCCC-CCEEEEECHHHHHHHHHC-CCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf ---9987763026445-714543100001234415-78883168999998457720764588997888899999898728
Q ss_pred CCCCCCCHHHHHHHHHHHH-----------HHHHHHHCCCCCC---CHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9977899888999999769-----------9999720399888---3355218995889999999999872499985200
Q 001792 641 GGVEKLSHDGRLAFVENHL-----------YEIFDSAENPING---SRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706 (1012)
Q Consensus 641 ~G~DK~S~deRi~wv~~n~-----------~~I~dsA~dPl~g---~~wW~~Ad~PwQfLA~C~El~~a~~s~~P~~y~S 706 (1012)
=.+||.+-++-++=+.+-+ .+|+....-|-.- ..--.++++||-.+-+.+|+++|+...+-+.|.+
T Consensus 485 iKVeK~~~e~~~~~~~~~l~t~lkpaVdmm~eiLt~G~~d~~~~dtl~~alg~~k~fvaamA~~e~Ary~la~G~asF~T 564 (1118)
T 3q23_A 485 IKVHTMTREVMSDELTKLLEGNLKPAIDMMVEFNTTGSLPENAVDVLNTALGDRKSFVALMALMEYSRYLVAEDKSAFVT 564 (1118)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHSCCCTTHHHHHHHHHGGGCSHHHHHHHHHHHHHHHCSCGGGEEE
T ss_pred CCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 64011347889999999863555278999999864677772689999998647851899999999988777468743223
Q ss_pred CCCCCCCCCCCHHHHHH-HHCCCHHHH-----------------HHCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 45645578871346899-720896222-----------------012657789-86403559999999999741089999
Q 001792 707 HLPIHQDGSCNGLQHYA-ALGRNTVEA-----------------AAVNLVAGE-KPADVYSEIAVRVHEIMKRDSNKDPS 767 (1012)
Q Consensus 707 ~lPV~qDGSCNGLQHyA-AL~rD~~Ga-----------------~~VNLipsd-~P~DvYs~Va~~V~~~i~~da~~d~~ 767 (1012)
.|-+-.||--||==..= -+|.-.... +.+|=.-+. .--|.|..+++.+...+.....+-..
T Consensus 565 ~L~~ElDGVTNGP~Namv~~G~g~~t~~~~~nl~KgG~F~G~~g~t~N~~~~~~~n~DLYE~ts~~l~~aLg~~~~~~~~ 644 (1118)
T 3q23_A 565 PLYVEADGVTNGPINAMMLMTGGLFTPDWIRNIAKGGLFIGSPNKTMNEHRSTADNNDLYQASTNALMESLGKLRSNYAS 644 (1118)
T ss_dssp CCEEEEEETTHHHHHHHHHHCCSCCCHHHHHHHHTTTEEESCTTCCHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 04887447466379999995677678889877631302316897416666245687138999999999998776641014
Q ss_pred CCH------HH-HHHHHH----------HCCCCCCCCCCCCEEEECCCCHHHHHHHHHH--------HHHHC--------
Q ss_conf 981------68-999995----------2026522223400321016522307999999--------98774--------
Q 001792 768 KHP------QA-LLAKIL----------IDQVDRKLVKQTVMTSVYGVTFVGAREQIKR--------RLEEK-------- 814 (1012)
Q Consensus 768 ~~~------~~-~~ak~L----------~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~--------~L~~~-------- 814 (1012)
+.| .. .++-.. .-.++|++.|.|+-...||+...|+..-|.+ ++.+.
T Consensus 645 n~Pwq~q~~~l~sl~s~f~gd~~~~Eng~~~l~R~~aKnPlT~~~YGSg~rgia~gva~~~idtfYEKlsDv~~~r~~~~ 724 (1118)
T 3q23_A 645 NMPIQSQIDSLLSLMDLFLPDINLGENGALELKRGIAKNPLTITIYGSGARGIAGKLVSSVTDAIYERMSDVLKARAKDP 724 (1118)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEECTTCCEEECTHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78067899999999998624230388862243233441875266526762788777788999999999887775132055
Q ss_pred ------------------------------------------C-------------CCCCH------HHHH----HHHHH
Q ss_conf ------------------------------------------8-------------99984------6588----99889
Q 001792 815 ------------------------------------------G-------------HITDD------RQLF----AAACY 829 (1012)
Q Consensus 815 ------------------------------------------g-------------~~~d~------~~~~----~~a~Y 829 (1012)
| .+.+. ..+. .+...
T Consensus 725 ~~~~~ma~~~kna~s~~~~~~~l~~~l~dm~~l~~flp~~~~~~~~~~~~~~~~~~k~~~k~F~~~~~qlk~~~~n~~~~ 804 (1118)
T 3q23_A 725 NISAAMAMFGKQAASEAHAEELLARFLKDMETLTSTVPVKRKGVLELQSTGTGAKGKINPKTYTIKGEQLKALQENMLHF 804 (1118)
T ss_dssp TCCHHHHHHTTTCSSSHHHHHHHHHHHHHHHHHHHEEEEEETTEEEEEECSCCCCSCCCTTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
T ss_conf 53456654200110144599999999998775344154664442101104764446557632442788998999988888
Q ss_pred HHHHHHHHHHHHH----HHHHH-------HH------HHHHHHHHHHHCCC--------------------------CCE
Q ss_conf 9999999999999----98999-------99------99999999998189--------------------------958
Q 001792 830 AAKVTLTALGEIF----EAARS-------IM------GWLGDCAKVIASEN--------------------------QPV 866 (1012)
Q Consensus 830 lak~v~~ai~e~f----~~A~~-------im------~WL~~~A~~i~~~~--------------------------~pV 866 (1012)
+.+.+..+|...| ..+.+ || .|=+.++...++.+ .||
T Consensus 805 ~ve~~~~~I~~TvG~~L~~atEql~~aTniQ~~~~q~~f~~~v~ek~ae~~~~~t~kk~e~Lsqk~~~~I~~eLs~laPi 884 (1118)
T 3q23_A 805 FVEPLRNGITQTVGESLVYSTEQLQKATQIQSVVLEDMFKQRVQEKLAEKAKDPTWKKGDFLTQKELNDIQASLNNLAPM 884 (1118)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCTTCCCBHHHHHHHHHTTGGGCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 89999999998888998865899999987899999999999999999986204555752404487899999999742521
Q ss_pred EEECCCCCEEEEEEC-CCCCEEEEEEEE-E----EEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 997489991887412-586635886359-9----9995279856555531069995202243699999999985649949
Q 001792 867 RWTTPLGLPVVQPYC-KNERHLIRTSLQ-V----LALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940 (1012)
Q Consensus 867 ~WtTPlGlpVvQ~Y~-k~~~~~V~t~lq-~----i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmmlta~~~~~~Gi~F 940 (1012)
.=+---||-+----. +..-.++.|.+- + ..+..+++ + -..|+|==-|-+=||. ||-+...+...-.+-
T Consensus 885 ~~s~sQt~~lgg~e~s~vtn~~latN~d~~~~tp~~i~~p~d-~----GVraiPf~tIgtGDam-MMq~~~~m~~aP~~~ 958 (1118)
T 3q23_A 885 IETGSQTFYIAGSENAEVANQVLATNLDDRMRVPMSIYAPAQ-A----GVAGIPFMTIGTGDGM-MMQTLSTMKGAPKNT 958 (1118)
T ss_dssp EECSSCEECTTEEEESTTTCSEEECCTTSCCCEECCEEEECC-C----TTTHHHHHHHHHTHHH-HHHHHHHSTTCCCSC
T ss_pred EECCCCEEEECCCCCCCCCCHHEECCCCCCCCCCEEECCCCC-C----CCCCCCEEEECCCHHH-HHHHHHHCCCCCHHH
T ss_conf 454871477325455420011000036886204502127899-7----6022514675065489-999997203682444
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 8840443579899468999999999976092248889999997489
Q 001792 941 AGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYP 986 (1012)
Q Consensus 941 asVHDSFwThA~dvd~M~~ilRe~FV~Lys~~il~~l~e~f~~~~~ 986 (1012)
.-|-|-+=+.-.|+..-+..+-|+-.+=...+++.++++.|..-..
T Consensus 959 L~VFDG~d~~v~~it~aS~~iNeaV~~SW~~n~~~~~~~~fskFmk 1004 (1118)
T 3q23_A 959 LKIFDGMNIGLNDITDASRKANEAVYTSWQGNPIKNVYESYAKFMK 1004 (1118)
T ss_dssp EEETTEEEEETTSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 4303566677503767339888999876500578899999999987
No 4
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=1.00 E-value=1 Score=25.67 Aligned_cols=210 Identities=14% Similarity=0.172 Sum_probs=123.8
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 99998724999852004564557887134689972089622201265778986403559999999999741089999981
Q 001792 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770 (1012)
Q Consensus 691 El~~a~~s~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~~~ 770 (1012)
+++.+...+ .++ .-|.-|-|-==|-.+|.|.+|+....+.+ ...|||+..|..+-..-.++
T Consensus 301 ~iR~~f~a~--~G~---~lv~aDySqiElRvlAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~~~~--------- 361 (540)
T 4dfk_A 301 RIRRAFIAE--EGW---LLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVPREA--------- 361 (540)
T ss_dssp HHHTTEECC--TTE---EEEEEEETTHHHHHHHHHHCCHHHHHHHH-----TTCCHHHHHHHHHHTCCGGG---------
T ss_pred HHHHEEECC--CCC---EEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHCCCCHHH---------
T ss_conf 554337579--998---89994277789999999849999999985-----39987999999980998353---------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999995202652222340032101652230799999998774899984658899889999999999999998999999
Q 001792 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850 (1012)
Q Consensus 771 ~~~~ak~L~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~ 850 (1012)
...-.|+..|...--+.||.+.+|..+++ |+ +.+ -|+.+.+...+.||+. .+
T Consensus 362 --------v~~~~R~~aK~~~fg~~YG~~~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~v---~~ 413 (540)
T 4dfk_A 362 --------VDPLMRRAAKTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPKV---RA 413 (540)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHSTHH---HH
T ss_pred --------CCHHHHHHHHHHHHHHHHCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCHHH---HH
T ss_conf --------69999967789987455178666788871-------98-999---------9999999998869209---99
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999981899589974899918874125866358863599999527985655553106999520224369999999
Q 001792 851 WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTA 930 (1012)
Q Consensus 851 WL~~~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~~V~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmmlta 930 (1012)
|+..+.....+.| .-+|..|-...-|--. +.....|.+.--.+-|++=+=-|+-++..|
T Consensus 414 ~~~~~~~~a~~~G---yv~Tl~GRrr~~p~~~------------------s~~~~~r~~aeR~a~N~~iQGsaAdi~K~a 472 (540)
T 4dfk_A 414 WIEKTLEEGRRRG---YVETLFGRRRYVPDLE------------------ARVKSVREAAERMAFNMPVQGTAADLMKLA 472 (540)
T ss_dssp HHHHHHHHHHHHS---EEECTTCCEEECGGGG------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC---CEECCCCCEECCCCCC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999679---2898889744277556------------------655777756435576166376999999999
Q ss_pred H-----HHHHCCCC-EEEEECCCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 9-----98564994-988404435--79899468999999999976
Q 001792 931 V-----ACRDAGLH-FAGVHDSFW--THACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 931 ~-----~~~~~Gi~-FasVHDSFw--ThA~dvd~M~~ilRe~FV~L 968 (1012)
. ...+.|.. ...|||... ++...++.+..++++.+-.-
T Consensus 473 mi~~~~~l~~~~~~l~lqVHDElv~ev~~~~~~~~~~~v~~~Me~a 518 (540)
T 4dfk_A 473 MVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGV 518 (540)
T ss_dssp HHHHHHHHHHHTCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHCC
T ss_conf 9999999986698699997553789827899999999999999605
No 5
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=1.00 E-value=1 Score=24.85 Aligned_cols=211 Identities=18% Similarity=0.171 Sum_probs=121.8
Q ss_pred HHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999872499985200456455788713468997208962220126577898640355999999999974108999998
Q 001792 690 INLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKH 769 (1012)
Q Consensus 690 ~El~~a~~s~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~~ 769 (1012)
.+++.+... |.++ .-|.-|-|-==|-.+|.|.+|.....+-+ ...|||+..|..+-..-.++
T Consensus 364 ~~iR~~f~~--~~g~---~lv~aDysqiElRilA~ls~d~~l~~af~-----~g~Dih~~tA~~~f~~~~e~-------- 425 (605)
T 2kfn_A 364 RRIRQAFIA--PEDY---VIVSADYSQIELRIMAHLSRDKGLLTAFA-----EGKDIHRATAAEVFGLPLET-------- 425 (605)
T ss_dssp HHHHHTBBC--CTTE---EEEEEEETTHHHHHHHHHTTCHHHHHHHH-----TTCCHHHHHHHHHTTCCGGG--------
T ss_pred HHHHHEEEC--CCCC---EEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHHCCCHHH--------
T ss_conf 767643507--9997---79983233668999999817899999986-----49988999999981998464--------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 16899999520265222234003210165223079999999877489998465889988999999999999999899999
Q 001792 770 PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIM 849 (1012)
Q Consensus 770 ~~~~~ak~L~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im 849 (1012)
...-.|...|...--+.||.+.+|..+++ |+..++ |+.+.+...+.||+ +.
T Consensus 426 ---------vt~~~R~~aK~~~fg~~YG~~~~~la~~l-------~i~~~e----------a~~~i~~~~~~~p~---v~ 476 (605)
T 2kfn_A 426 ---------VTSEQRRSAKAINFGLIYGMSAFGLARQL-------NIPRKE----------AQKYMDLYFERYPG---VL 476 (605)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTCCTTHHHHHH-------TCCTTT----------HHHHHHHHHHHCHH---HH
T ss_pred ---------CCHHHHHHHHHHHCCCCCCCCHHHHHHHC-------CCCHHH----------HHHHHHHHHHHCCC---HH
T ss_conf ---------69999966335220441257878999874-------989999----------99999999997934---89
Q ss_pred HHHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHH--
Q ss_conf 999999999981899589974899918874125866358863599999527985655553106999520224369999--
Q 001792 850 GWLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMM-- 927 (1012)
Q Consensus 850 ~WL~~~A~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~~V~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmm-- 927 (1012)
+|+..+.....+.| .| +|.+|-...-|--. +.....|.+.--.+-|++=+=-|+-++
T Consensus 477 ~~~~~~~~~a~~~g-~v--~tl~GRrr~~p~~~------------------s~~~~~r~~~~r~a~N~~iQgsaaDi~k~ 535 (605)
T 2kfn_A 477 EYMERTRAQAKEQG-YV--ETLDGRRLYLPDIK------------------SSNGARRAAAERAAINAPMQGTAADIIKR 535 (605)
T ss_dssp HHHHHHHHHHHHHS-EE--ECTTCCEEECTTTT------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CE--ECCCCCEEECCCCC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998769-38--88889868788666------------------77700220343557638768799999999
Q ss_pred -HHHH--HHHHCCCC---EEEEECCCCC--CCCCHHHHHHHHHHHHHHH
Q ss_conf -9999--98564994---9884044357--9899468999999999976
Q 001792 928 -MTAV--ACRDAGLH---FAGVHDSFWT--HACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 928 -lta~--~~~~~Gi~---FasVHDSFwT--hA~dvd~M~~ilRe~FV~L 968 (1012)
|..+ .+.+.|+. ...|||.... +...++.+..++++.+-.-
T Consensus 536 am~~~~~~l~~~~~~~~~~l~vHDEl~~ev~~~~~~~~~~~v~~~M~~~ 584 (605)
T 2kfn_A 536 AMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENC 584 (605)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 9999999998659983356774517999807888999999999998546
No 6
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=1.00 E-value=1 Score=21.77 Aligned_cols=197 Identities=15% Similarity=0.197 Sum_probs=102.2
Q ss_pred CCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 56455788713468997208962220126577898640355999999999974108999998168999995202652222
Q 001792 708 LPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787 (1012)
Q Consensus 708 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~ak~L~~~I~RKvV 787 (1012)
.-|.-|-|-==|-.+|.|.+|.....+.+ ...|||+..|..+-..-.++ ...-.|...
T Consensus 605 ~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~~e~-----------------vt~~~R~~a 662 (832)
T 1bgx_T 605 LLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVPREA-----------------VDPLMRRAA 662 (832)
T ss_dssp CEEEEEESSHHHHHHHHTTTCTTHHHHHH-----HTCCHHHHHHHHHHTCCTTS-----------------CCTTHHHHH
T ss_pred EEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHHCCCHHH-----------------CCHHHHHHH
T ss_conf 79983455669999999828899999986-----49988999999982999464-----------------699999888
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 34003210165223079999999877489998465889988999999999999999899999999999999981899589
Q 001792 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR 867 (1012)
Q Consensus 788 KqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV~ 867 (1012)
|...--++||.+.+|..+++ |+ +.+ -|+.+.+...+.||+ +.+|+.++.....+.|- |
T Consensus 663 K~~nfgi~YG~~~~gLa~~l-------gi-s~~---------eA~~~i~~~~~~~p~---v~~~~~~~~~~a~~~Gy-v- 720 (832)
T 1bgx_T 663 KTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPK---VRAWIEKTLEEGRRRGY-V- 720 (832)
T ss_dssp HHHHHHTTSCCCHHHHHHHS-------SC-CHH---------HHHHHHHHHHHHCHH---HHHHHHHHTHHHHTTSS-C-
T ss_pred HHHHHHHHCCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCE-E-
T ss_conf 89987343089666799883-------99-999---------999999999997933---89999999999997792-8-
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEEEEEEEEC-CCCCCCHHHHHCCCCCCCHHHHHHHHHH---HHHHH--HHHCCCC-E
Q ss_conf 97489991887412586635886359999952-7985655553106999520224369999---99999--8564994-9
Q 001792 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQR-EGNLVEIRKQRTAFPPNFVHSLDGSHMM---MTAVA--CRDAGLH-F 940 (1012)
Q Consensus 868 WtTPlGlpVvQ~Y~k~~~~~V~t~lq~i~l~~-~~d~vd~rKq~~Af~PNFIHSLDAsHmm---lta~~--~~~~Gi~-F 940 (1012)
+|.+|-... +.. .+.....|...--.+-|++=+=-|+-++ |..+. ..+.+.. .
T Consensus 721 -~Tl~GRrr~-------------------~p~i~s~~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~~~~~lv 780 (832)
T 1bgx_T 721 -ETLFGRRRY-------------------VPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARML 780 (832)
T ss_dssp -CCSSCCCCC-------------------CGGGSCSSHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHHTCEEE
T ss_pred -EECCCCEEE-------------------CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -822798897-------------------885567772013132112302743779999999999999999985797399
Q ss_pred EEEECCCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf 88404435--79899468999999999976
Q 001792 941 AGVHDSFW--THACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 941 asVHDSFw--ThA~dvd~M~~ilRe~FV~L 968 (1012)
..|||... ++...++.+..++++.+-.-
T Consensus 781 lqVHDElv~evp~~~~~~~~~~v~~~M~~a 810 (832)
T 1bgx_T 781 LQVHDELVLEAPKERAEAVARLAKEVMEGV 810 (832)
T ss_dssp EEETTEEEEEC----CHHHHHHHHHHHHSS
T ss_pred EEECCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 986427899847889999999999998516
No 7
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=1.00 E-value=1 Score=21.33 Aligned_cols=199 Identities=15% Similarity=0.168 Sum_probs=116.6
Q ss_pred CCCCCCCCCCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf 45645578871346899720896222012657789864035599999999997410899999816899999520265222
Q 001792 707 HLPIHQDGSCNGLQHYAALGRNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKL 786 (1012)
Q Consensus 707 ~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~ak~L~~~I~RKv 786 (1012)
+.-|.-|-|-==|-.+|.|.+|.....+-+ ...|||+..|..+-..-. +. ...-.|+.
T Consensus 363 ~~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~~-----~~------------vt~~~R~~ 420 (592)
T 3pv8_A 363 WLIFAADYSQIELRVLAHIAEDDNLMEAFR-----RDLDIHTKTAMDIFQVSE-----DE------------VTPNMRRQ 420 (592)
T ss_dssp EEEEEEEETTHHHHHHHHHHTCHHHHHHHH-----TTCCHHHHHHHHHHSCCT-----TT------------CCHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHHCCCH-----HH------------CCHHHHHH
T ss_conf 789985344679999999848999999985-----399878999999828895-----64------------79999978
Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 23400321016522307999999987748999846588998899999999999999989999999999999998189958
Q 001792 787 VKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPV 866 (1012)
Q Consensus 787 VKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV 866 (1012)
.|...--+.||.+.+|...++ |+ +.+ -|+.+.+...+.||+. ..|+.++.....+.| .|
T Consensus 421 aK~~~fg~~YG~~~~~La~~l-------~i-~~~---------eA~~~i~~~~~~~p~v---~~~~~~~~~~a~~~G-yv 479 (592)
T 3pv8_A 421 AKAVNYGIVYGISDYGLAQNL-------NI-SRK---------EAAEFIERYFESFPGV---KRYMENIVQEAKQKG-YV 479 (592)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHS-EE
T ss_pred HHHHHHHHHHCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCHHH---HHHHHHHHHHHHHCC-CE
T ss_conf 899999787468857899882-------99-999---------9999999999979009---999999999999749-88
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHH---H--HHHHCCC---
Q ss_conf 9974899918874125866358863599999527985655553106999520224369999999---9--9856499---
Q 001792 867 RWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTA---V--ACRDAGL--- 938 (1012)
Q Consensus 867 ~WtTPlGlpVvQ~Y~k~~~~~V~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmmlta---~--~~~~~Gi--- 938 (1012)
+|.+|-...-|-- .+.....|.+.--.+-|++=+=-|+-++..| + .+.+.|+
T Consensus 480 --~Tl~GRrr~~p~i------------------~s~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~~~~~~ 539 (592)
T 3pv8_A 480 --TTLLHRRRYLPDI------------------TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAH 539 (592)
T ss_dssp --ECTTCCEEECGGG------------------GCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred --ECCCCCEEECCCC------------------CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf --7888985427775------------------66466565132144613410348999999999999999996599834
Q ss_pred CEEEEECCC--CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 498840443--579899468999999999976
Q 001792 939 HFAGVHDSF--WTHACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 939 ~FasVHDSF--wThA~dvd~M~~ilRe~FV~L 968 (1012)
-...|||.. =++...++.+..++++.+-.-
T Consensus 540 l~lqVHDElv~ev~~~~~~~~~~~v~~~Me~a 571 (592)
T 3pv8_A 540 LLLQVHDELILEAPKEEMERLCRLVPEVMEQA 571 (592)
T ss_dssp EEEECSSEEEEEEEGGGHHHHHHHHHHHHHTS
T ss_pred EEEEECCEEEEEECHHHHHHHHHHHHHHHHHC
T ss_conf 78998563689807899999999999999605
No 8
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=1.00 E-value=1 Score=15.95 Aligned_cols=186 Identities=14% Similarity=0.070 Sum_probs=102.1
Q ss_pred CCCCEECCCCCCCCCCCHHHHHHHHC---CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 98520045645578871346899720---896222012657789864035599999999997410899999816899999
Q 001792 701 PHSVISHLPIHQDGSCNGLQHYAALG---RNTVEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777 (1012)
Q Consensus 701 P~~y~S~lPV~qDGSCNGLQHyAAL~---rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~d~~~~~~~~~ak~ 777 (1012)
|+++ .-|.-|-|-==|-.+|.|. +|.....+.+ .+ |||+..|. +-
T Consensus 460 ~~G~---~lv~aDySqiElRilAhls~~~~D~~l~~af~--~g----DiH~~tA~-~~---------------------- 507 (698)
T 1x9m_A 460 GKPW---VQAGIDASGLELRCLAHFMARFDNGEYAHEIL--NG----DIHTKNQI-AA---------------------- 507 (698)
T ss_dssp CCBC---EEEEEEETTHHHHHHHHHHHHHHTTHHHHHHH--HS----CHHHHHHH-HS----------------------
T ss_pred CCCC---EEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHH--CC----CHHHHHHH-HH----------------------
T ss_conf 9997---89997532448999999861238599999886--79----87699999-81----------------------
Q ss_pred HHCCC-CCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52026-52222340032101652230799999998774899984658899889999999999999998999999999999
Q 001792 778 LIDQV-DRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA 856 (1012)
Q Consensus 778 L~~~I-~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~~A 856 (1012)
++ .|+..|...--+.||.+..|...++ |+ +.+ -|+.+.+...+.||+.+...+.+.+.+
T Consensus 508 ---gv~~R~~aK~~nfg~~YG~g~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~v~~~~~~~~~~~ 567 (698)
T 1x9m_A 508 ---ELPTRDNAKTFIYGFLYGAGDEKIGQIV-------GA-GKE---------RGKELKKKFLENTPAIAALRESIQQTL 567 (698)
T ss_dssp ---CCSSHHHHHHHHHHHHTTCCHHHHHTTT-------TC-CHH---------HHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ---CCCHHHHHHHHHHCCCCCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf ---9842756689997001189777999882-------98-999---------999999999997937888887767654
Q ss_pred --------HHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCHHHHHHHHHH-
Q ss_conf --------99981899589974899918874125866358863599999527985655553106999520224369999-
Q 001792 857 --------KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMM- 927 (1012)
Q Consensus 857 --------~~i~~~~~pV~WtTPlGlpVvQ~Y~k~~~~~V~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmm- 927 (1012)
+.+......=..+|++|-.. .++. .| .+-|++=+=-|+-++
T Consensus 568 ~~~~~~~~~~~~~a~~~gyv~tl~GRrr-------------------~~r~------~r-----~a~N~~iQGsaAdi~k 617 (698)
T 1x9m_A 568 VESSQWVAGEQQVKWKRRWIKGLDGRKV-------------------HVRS------PH-----AALNTLLQSAGALICK 617 (698)
T ss_dssp BC----------CCBSCSEEECTTSCEE-------------------ECSC------GG-----GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCEEECCCCCEE-------------------ECCC------HH-----HHHHHHHHHHHHHHHH
T ss_conf 1003679999999986892882588755-------------------2455------05-----5755664689999999
Q ss_pred --HHHH--HHHHCCC--------C-EEEEECCCCCCCC--C-HHHHHHHHHHHHHHH
Q ss_conf --9999--9856499--------4-9884044357989--9-468999999999976
Q 001792 928 --MTAV--ACRDAGL--------H-FAGVHDSFWTHAC--D-VDEMNQILRKKFVEL 968 (1012)
Q Consensus 928 --lta~--~~~~~Gi--------~-FasVHDSFwThA~--d-vd~M~~ilRe~FV~L 968 (1012)
|..+ .+.+.|+ . ...|||......- + ++.+..++++.+-.-
T Consensus 618 ~am~~i~~~l~~~~~~~~~~~~~~lvl~VHDElv~ev~~~~~~~~~~~~~~~~M~~a 674 (698)
T 1x9m_A 618 LWIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWV 674 (698)
T ss_dssp HHHHHHHHHHHHTTCCBSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999986488756676626998865389998063567999999999999754
No 9
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Probab=1.00 E-value=1 Score=15.21 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.5
Q ss_pred CCCCCCCHHHH
Q ss_conf 55788713468
Q 001792 711 HQDGSCNGLQH 721 (1012)
Q Consensus 711 ~qDGSCNGLQH 721 (1012)
..|||||-++|
T Consensus 9 t~DG~cNNl~~ 19 (104)
T 1d2v_A 9 TITGMCNNRRS 19 (104)
T ss_dssp CSSCTTSSSSS
T ss_pred CCCCCCCCCCC
T ss_conf 88877358898
No 10
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=1.00 E-value=1 Score=14.32 Aligned_cols=18 Identities=33% Similarity=0.707 Sum_probs=15.7
Q ss_pred CCCCCEECCCCCCCCCCC
Q ss_conf 998520045645578871
Q 001792 700 SPHSVISHLPIHQDGSCN 717 (1012)
Q Consensus 700 ~P~~y~S~lPV~qDGSCN 717 (1012)
+|+..+.++|.++|||-+
T Consensus 53 ~v~~iVvGlP~~mdGt~~ 70 (138)
T 1nu0_A 53 QPDEIIVGLPLNMDGTEQ 70 (138)
T ss_dssp CCSEEEEEEEECTTSCBC
T ss_pred CCCEEEEECCCCCCCCCC
T ss_conf 999899940447795867
Done!