Query 001793
Match_columns 1012
No_of_seqs 168 out of 291
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 2E-132 5E-137 1231.0 74.5 978 12-1003 8-1027(1266)
2 KOG1525 Sister chromatid cohes 99.1 1.3E-09 2.9E-14 138.4 16.2 220 8-230 409-648 (1266)
3 PTZ00429 beta-adaptin; Provisi 98.7 9.5E-05 2.1E-09 92.0 40.1 389 269-755 39-437 (746)
4 KOG2171 Karyopherin (importin) 98.6 0.00088 1.9E-08 83.9 41.8 545 244-856 23-596 (1075)
5 PTZ00429 beta-adaptin; Provisi 98.2 0.0073 1.6E-07 75.5 38.1 122 246-373 89-210 (746)
6 PF01602 Adaptin_N: Adaptin N 98.1 0.00048 1E-08 83.4 26.2 117 245-369 62-179 (526)
7 PRK09687 putative lyase; Provi 97.8 0.00016 3.5E-09 80.6 12.4 145 246-407 41-186 (280)
8 KOG1020 Sister chromatid cohes 97.7 0.0098 2.1E-07 76.3 26.7 270 297-615 810-1086(1692)
9 PRK09687 putative lyase; Provi 97.7 0.00032 7E-09 78.1 12.5 129 262-407 90-219 (280)
10 KOG1020 Sister chromatid cohes 97.6 0.13 2.7E-06 66.7 34.2 163 246-413 797-964 (1692)
11 PF01602 Adaptin_N: Adaptin N 97.4 0.24 5.3E-06 60.0 32.7 240 244-534 133-375 (526)
12 KOG2023 Nuclear transport rece 97.3 0.67 1.5E-05 55.8 33.8 175 166-371 105-285 (885)
13 PRK13800 putative oxidoreducta 97.2 0.042 9.1E-07 71.2 23.9 119 264-405 777-895 (897)
14 PF12717 Cnd1: non-SMC mitotic 97.0 0.016 3.4E-07 60.3 14.8 94 316-411 1-94 (178)
15 PF13646 HEAT_2: HEAT repeats; 97.0 0.0048 1E-07 55.7 9.3 83 308-405 4-88 (88)
16 PRK13800 putative oxidoreducta 96.8 0.0075 1.6E-07 78.0 12.2 120 263-407 622-741 (897)
17 KOG1062 Vesicle coat complex A 96.7 1.5 3.2E-05 54.1 29.2 282 258-613 103-390 (866)
18 KOG1242 Protein containing ada 96.6 2 4.4E-05 51.7 29.6 285 245-582 151-449 (569)
19 KOG1824 TATA-binding protein-i 96.6 3.4 7.3E-05 52.0 33.0 541 204-769 454-1054(1233)
20 KOG0212 Uncharacterized conser 96.6 2.5 5.4E-05 50.4 29.0 413 207-644 26-487 (675)
21 PF10508 Proteasom_PSMB: Prote 96.5 0.4 8.7E-06 58.1 23.6 242 164-410 90-367 (503)
22 PF12348 CLASP_N: CLASP N term 96.4 0.043 9.4E-07 59.0 13.0 147 263-412 54-209 (228)
23 KOG1824 TATA-binding protein-i 96.3 4.8 0.0001 50.7 60.1 365 21-412 24-467 (1233)
24 PF13646 HEAT_2: HEAT repeats; 96.2 0.018 3.9E-07 51.9 7.4 86 264-367 1-88 (88)
25 KOG2025 Chromosome condensatio 96.1 5.3 0.00011 48.9 34.0 125 269-404 92-217 (892)
26 KOG2023 Nuclear transport rece 95.9 2.5 5.5E-05 51.2 24.7 216 245-469 378-612 (885)
27 KOG1061 Vesicle coat complex A 95.9 2 4.4E-05 52.9 24.7 405 262-710 13-447 (734)
28 PF14500 MMS19_N: Dos2-interac 95.8 1.1 2.4E-05 49.6 20.8 231 63-308 6-255 (262)
29 PLN03200 cellulose synthase-in 95.3 3.3 7.1E-05 57.2 26.0 373 315-752 416-812 (2102)
30 KOG1949 Uncharacterized conser 95.2 1.9 4E-05 52.4 20.6 116 263-382 221-346 (1005)
31 PF12755 Vac14_Fab1_bd: Vacuol 95.1 0.061 1.3E-06 50.3 6.7 67 340-407 25-94 (97)
32 KOG0213 Splicing factor 3b, su 94.9 6.3 0.00014 48.4 23.8 298 63-409 560-954 (1172)
33 PF12348 CLASP_N: CLASP N term 94.6 0.27 5.9E-06 52.8 11.4 102 264-370 96-205 (228)
34 cd00020 ARM Armadillo/beta-cat 94.6 0.052 1.1E-06 51.2 5.2 105 263-367 8-116 (120)
35 COG5218 YCG1 Chromosome conden 94.6 9.9 0.00021 45.7 24.1 250 269-558 98-371 (885)
36 COG5096 Vesicle coat complex, 94.6 18 0.00038 45.6 29.5 129 271-410 28-157 (757)
37 PF12719 Cnd3: Nuclear condens 94.5 0.44 9.5E-06 53.8 13.1 98 270-371 35-143 (298)
38 KOG1060 Vesicle coat complex A 94.5 18 0.00038 45.1 27.8 131 270-410 43-173 (968)
39 PF12717 Cnd1: non-SMC mitotic 94.4 0.41 9E-06 49.7 11.7 83 248-333 11-93 (178)
40 KOG1949 Uncharacterized conser 94.3 7.8 0.00017 47.4 22.9 229 265-504 177-423 (1005)
41 PF02985 HEAT: HEAT repeat; I 94.2 0.07 1.5E-06 38.8 3.8 29 343-371 1-29 (31)
42 PLN03200 cellulose synthase-in 94.0 35 0.00076 47.8 30.8 111 602-717 733-862 (2102)
43 KOG1062 Vesicle coat complex A 93.8 3.1 6.7E-05 51.5 18.6 165 167-371 220-414 (866)
44 PF12460 MMS19_C: RNAPII trans 93.7 19 0.00041 42.6 26.4 299 69-379 56-402 (415)
45 PF13513 HEAT_EZ: HEAT-like re 93.6 0.048 1E-06 44.9 2.3 52 317-368 1-54 (55)
46 PF10508 Proteasom_PSMB: Prote 93.4 0.47 1E-05 57.5 11.4 147 260-409 75-231 (503)
47 KOG0414 Chromosome condensatio 93.2 2.3 5E-05 54.6 16.8 151 244-400 896-1055(1251)
48 KOG0414 Chromosome condensatio 93.1 38 0.00082 44.2 56.8 457 244-732 294-797 (1251)
49 KOG2011 Sister chromatid cohes 93.0 0.2 4.3E-06 63.8 7.3 104 307-410 291-400 (1048)
50 PF10363 DUF2435: Protein of u 92.7 0.95 2.1E-05 41.9 9.6 87 302-392 2-89 (92)
51 PF13513 HEAT_EZ: HEAT-like re 92.3 0.13 2.7E-06 42.4 3.1 52 356-407 1-55 (55)
52 COG5240 SEC21 Vesicle coat com 92.0 28 0.00061 42.0 22.2 324 80-434 45-386 (898)
53 KOG2011 Sister chromatid cohes 91.9 11 0.00024 48.7 20.6 251 142-406 138-432 (1048)
54 PF12755 Vac14_Fab1_bd: Vacuol 91.7 0.39 8.5E-06 44.9 5.9 84 279-362 3-88 (97)
55 cd00020 ARM Armadillo/beta-cat 91.5 0.32 6.8E-06 45.8 5.3 96 312-407 16-118 (120)
56 KOG2259 Uncharacterized conser 91.5 0.32 6.9E-06 58.4 6.1 97 306-406 376-472 (823)
57 COG5098 Chromosome condensatio 91.4 0.98 2.1E-05 54.6 10.0 104 308-411 304-417 (1128)
58 PF12765 Cohesin_HEAT: HEAT re 91.4 0.26 5.5E-06 38.7 3.6 39 327-365 3-41 (42)
59 COG5098 Chromosome condensatio 91.0 15 0.00033 45.0 19.1 140 243-382 280-427 (1128)
60 PF13001 Ecm29: Proteasome sta 90.9 9.3 0.0002 46.4 18.3 213 141-383 267-498 (501)
61 KOG0915 Uncharacterized conser 90.0 40 0.00087 45.1 22.9 329 53-393 1034-1457(1702)
62 TIGR02270 conserved hypothetic 89.9 2.4 5.2E-05 50.0 11.7 54 346-406 151-204 (410)
63 PF12719 Cnd3: Nuclear condens 89.8 19 0.0004 40.6 18.4 106 303-410 26-144 (298)
64 TIGR02270 conserved hypothetic 89.5 2 4.2E-05 50.7 10.5 123 266-409 121-267 (410)
65 KOG2259 Uncharacterized conser 89.3 2.7 5.9E-05 50.9 11.2 111 297-410 192-311 (823)
66 KOG1078 Vesicle coat complex C 88.8 9.2 0.0002 47.5 15.3 137 221-365 389-526 (865)
67 KOG1820 Microtubule-associated 88.7 5.4 0.00012 50.7 14.0 151 258-412 249-446 (815)
68 KOG2956 CLIP-associating prote 87.8 5.8 0.00013 46.5 12.3 168 252-435 322-498 (516)
69 KOG1967 DNA repair/transcripti 87.8 2.8 6.2E-05 52.5 10.4 149 261-409 866-1024(1030)
70 COG5096 Vesicle coat complex, 86.9 2.5 5.3E-05 52.9 9.4 103 304-410 93-196 (757)
71 PF01347 Vitellogenin_N: Lipop 86.5 14 0.00029 46.1 16.0 127 256-403 480-616 (618)
72 KOG1248 Uncharacterized conser 85.3 71 0.0015 41.9 20.9 284 125-411 585-900 (1176)
73 PF12231 Rif1_N: Rap1-interact 84.7 87 0.0019 36.6 26.2 322 66-412 3-355 (372)
74 COG1413 FOG: HEAT repeat [Ener 83.4 9.1 0.0002 43.6 11.5 127 257-409 104-242 (335)
75 PF14676 FANCI_S2: FANCI solen 83.0 2.8 6.1E-05 42.8 6.3 121 245-368 38-158 (158)
76 smart00638 LPD_N Lipoprotein N 82.5 47 0.001 41.0 18.1 144 254-407 389-543 (574)
77 PF02985 HEAT: HEAT repeat; I 81.8 2.6 5.6E-05 30.5 4.0 29 382-410 2-30 (31)
78 COG1413 FOG: HEAT repeat [Ener 81.3 12 0.00026 42.6 11.5 29 382-410 182-210 (335)
79 KOG1060 Vesicle coat complex A 81.3 1.6E+02 0.0035 37.2 31.4 162 245-415 91-252 (968)
80 KOG0392 SNF2 family DNA-depend 80.2 9.5 0.00021 49.6 10.6 138 241-383 792-945 (1549)
81 KOG2171 Karyopherin (importin) 80.1 2.1E+02 0.0045 37.7 68.4 313 62-411 86-420 (1075)
82 KOG1943 Beta-tubulin folding c 79.3 2.2E+02 0.0047 37.4 30.5 179 205-413 515-709 (1133)
83 KOG0368 Acetyl-CoA carboxylase 78.8 1.3E+02 0.0027 40.7 19.5 247 107-371 768-1083(2196)
84 PF12765 Cohesin_HEAT: HEAT re 78.4 2.8 6E-05 32.9 3.4 39 366-404 3-42 (42)
85 KOG1967 DNA repair/transcripti 77.9 19 0.00042 45.5 12.0 124 241-365 883-1018(1030)
86 KOG1058 Vesicle coat complex C 77.7 97 0.0021 38.8 17.4 253 64-368 142-422 (948)
87 PF14500 MMS19_N: Dos2-interac 76.4 1.3E+02 0.0028 33.4 22.8 211 345-594 2-234 (262)
88 PF12074 DUF3554: Domain of un 75.4 1.6E+02 0.0034 33.8 18.4 203 147-354 19-256 (339)
89 COG5181 HSH155 U2 snRNP splice 74.8 1.9E+02 0.0041 35.6 18.4 259 146-410 395-718 (975)
90 KOG0413 Uncharacterized conser 74.6 1.4E+02 0.003 38.6 17.7 90 342-442 576-669 (1529)
91 KOG2025 Chromosome condensatio 74.2 2.4E+02 0.0052 35.4 29.8 215 141-409 75-294 (892)
92 PF10363 DUF2435: Protein of u 74.1 11 0.00024 34.9 6.8 85 267-357 8-92 (92)
93 KOG0166 Karyopherin (importin) 72.7 7.2 0.00016 46.8 6.5 141 262-406 152-305 (514)
94 COG5537 IRR1 Cohesin [Cell div 72.0 5.3 0.00011 48.1 5.1 104 302-409 273-386 (740)
95 KOG0211 Protein phosphatase 2A 71.9 13 0.00028 47.1 8.7 135 274-411 210-347 (759)
96 KOG2213 Apoptosis inhibitor 5/ 71.7 2.1E+02 0.0045 33.5 17.6 232 300-567 22-276 (460)
97 PF11864 DUF3384: Domain of un 71.1 2.4E+02 0.0052 34.0 21.9 166 116-291 147-330 (464)
98 KOG1059 Vesicle coat complex A 70.8 9.3 0.0002 47.0 6.8 112 256-375 103-214 (877)
99 PF01347 Vitellogenin_N: Lipop 70.1 62 0.0013 40.3 14.4 186 190-406 381-586 (618)
100 PF04826 Arm_2: Armadillo-like 69.7 1.8E+02 0.004 32.1 16.7 106 258-363 130-254 (254)
101 PF13251 DUF4042: Domain of un 69.5 50 0.0011 34.6 11.1 131 277-410 1-175 (182)
102 KOG0413 Uncharacterized conser 69.2 15 0.00033 46.5 8.2 137 269-410 938-1074(1529)
103 PF08167 RIX1: rRNA processing 68.3 37 0.0008 34.8 9.9 137 602-770 19-162 (165)
104 KOG1243 Protein kinase [Genera 68.3 20 0.00043 44.3 8.9 101 309-409 336-437 (690)
105 KOG1992 Nuclear export recepto 67.8 2E+02 0.0044 36.6 17.1 116 113-233 603-733 (960)
106 KOG1248 Uncharacterized conser 67.7 4.1E+02 0.0088 35.3 48.9 145 121-266 282-433 (1176)
107 KOG1059 Vesicle coat complex A 67.1 70 0.0015 39.8 13.0 165 244-409 163-365 (877)
108 KOG1240 Protein kinase contain 66.1 47 0.001 43.5 11.7 157 242-399 440-636 (1431)
109 PF05918 API5: Apoptosis inhib 65.7 44 0.00096 40.9 11.2 44 248-291 45-88 (556)
110 COG5537 IRR1 Cohesin [Cell div 65.0 41 0.00089 40.9 10.4 131 271-412 284-428 (740)
111 PF05804 KAP: Kinesin-associat 64.4 25 0.00055 44.3 9.1 177 644-831 289-478 (708)
112 PF05004 IFRD: Interferon-rela 63.4 2.5E+02 0.0055 31.9 16.3 65 649-713 47-113 (309)
113 PF05918 API5: Apoptosis inhib 63.4 92 0.002 38.2 13.3 83 274-363 34-116 (556)
114 PF03378 CAS_CSE1: CAS/CSE pro 63.4 1E+02 0.0023 36.8 13.7 177 75-266 45-242 (435)
115 PF14911 MMS22L_C: S-phase gen 63.2 79 0.0017 36.8 12.2 182 97-287 140-370 (373)
116 COG5218 YCG1 Chromosome conden 62.7 3.7E+02 0.008 33.1 24.2 261 22-371 2-266 (885)
117 KOG2213 Apoptosis inhibitor 5/ 62.1 3.1E+02 0.0068 32.1 25.8 90 274-368 36-134 (460)
118 smart00638 LPD_N Lipoprotein N 62.0 1.2E+02 0.0026 37.5 14.5 141 205-362 421-569 (574)
119 PF12530 DUF3730: Protein of u 61.2 2.5E+02 0.0053 30.5 16.4 165 586-756 19-190 (234)
120 PF12830 Nipped-B_C: Sister ch 60.5 37 0.0008 35.6 8.3 70 341-411 7-76 (187)
121 COG5240 SEC21 Vesicle coat com 59.6 4.1E+02 0.009 32.6 30.2 51 624-674 319-369 (898)
122 KOG0211 Protein phosphatase 2A 58.8 2.6E+02 0.0056 35.9 16.4 139 261-401 275-419 (759)
123 KOG1991 Nuclear transport rece 57.4 5.1E+02 0.011 33.8 18.3 241 144-387 317-592 (1010)
124 KOG2933 Uncharacterized conser 56.1 78 0.0017 35.7 10.0 162 244-410 107-281 (334)
125 PF06972 DUF1296: Protein of u 56.1 21 0.00046 30.1 4.3 35 322-360 7-41 (60)
126 KOG2062 26S proteasome regulat 56.0 56 0.0012 40.7 9.6 49 381-435 625-673 (929)
127 PF05327 RRN3: RNA polymerase 55.3 1E+02 0.0022 38.1 12.2 190 102-325 31-223 (563)
128 KOG1058 Vesicle coat complex C 55.2 5.5E+02 0.012 32.7 30.0 144 256-411 14-165 (948)
129 PF13251 DUF4042: Domain of un 54.6 89 0.0019 32.8 9.8 97 271-370 49-173 (182)
130 KOG1078 Vesicle coat complex C 51.6 6.3E+02 0.014 32.3 21.6 238 630-891 267-522 (865)
131 KOG2051 Nonsense-mediated mRNA 50.1 1.6E+02 0.0034 38.4 12.5 92 245-337 481-579 (1128)
132 PF05004 IFRD: Interferon-rela 49.9 2.2E+02 0.0047 32.4 12.9 150 263-412 87-260 (309)
133 KOG2032 Uncharacterized conser 49.8 4.8E+02 0.01 31.5 15.5 251 270-532 188-455 (533)
134 COG5181 HSH155 U2 snRNP splice 49.0 3.2E+02 0.0069 33.8 14.0 362 20-410 311-760 (975)
135 KOG0166 Karyopherin (importin) 48.4 5.9E+02 0.013 31.1 26.3 204 266-477 70-293 (514)
136 KOG1077 Vesicle coat complex A 48.2 85 0.0018 39.0 9.4 105 256-366 323-428 (938)
137 PF04826 Arm_2: Armadillo-like 47.4 97 0.0021 34.2 9.3 135 273-407 24-161 (254)
138 PF04118 Dopey_N: Dopey, N-ter 47.3 1.7E+02 0.0037 33.3 11.4 107 251-368 131-251 (307)
139 KOG2050 Puf family RNA-binding 47.3 6E+02 0.013 31.3 16.0 28 382-409 134-163 (652)
140 KOG2956 CLIP-associating prote 46.3 5.2E+02 0.011 31.1 15.0 166 163-331 300-476 (516)
141 KOG4413 26S proteasome regulat 45.8 1.6E+02 0.0035 33.5 10.4 129 275-410 53-201 (524)
142 PF12074 DUF3554: Domain of un 45.8 1.1E+02 0.0024 35.0 9.9 87 319-409 3-90 (339)
143 COG5116 RPN2 26S proteasome re 45.2 40 0.00086 40.7 5.9 95 313-411 526-652 (926)
144 PF08767 CRM1_C: CRM1 C termin 41.2 2.1E+02 0.0046 32.7 11.1 126 167-292 43-195 (319)
145 KOG2160 Armadillo/beta-catenin 41.0 3.5E+02 0.0077 31.2 12.5 99 270-373 132-242 (342)
146 KOG1241 Karyopherin (importin) 40.7 8.9E+02 0.019 30.9 27.8 153 258-411 360-532 (859)
147 cd00256 VATPase_H VATPase_H, r 40.7 7.1E+02 0.015 29.8 20.8 63 67-133 65-131 (429)
148 cd03568 VHS_STAM VHS domain fa 40.2 79 0.0017 31.8 6.6 72 602-677 35-113 (144)
149 PF11919 DUF3437: Domain of un 38.6 80 0.0017 29.2 5.8 57 355-412 2-61 (90)
150 PF00514 Arm: Armadillo/beta-c 37.7 54 0.0012 25.0 3.9 29 342-370 12-40 (41)
151 cd03561 VHS VHS domain family; 37.2 3.1E+02 0.0067 26.9 10.2 81 329-411 26-114 (133)
152 PF04867 DUF643: Protein of un 36.7 3.3E+02 0.0072 25.6 9.2 102 468-583 4-110 (114)
153 PF05804 KAP: Kinesin-associat 36.5 5.1E+02 0.011 33.1 14.1 114 590-711 311-437 (708)
154 PF12830 Nipped-B_C: Sister ch 36.0 2.3E+02 0.0051 29.6 9.7 65 304-373 9-76 (187)
155 KOG1242 Protein containing ada 35.9 9.3E+02 0.02 29.8 32.8 187 248-442 41-231 (569)
156 KOG2153 Protein involved in th 35.6 1E+02 0.0022 38.0 7.4 53 321-373 303-355 (704)
157 COG5064 SRP1 Karyopherin (impo 35.2 3.9E+02 0.0084 30.8 11.3 137 264-407 73-251 (526)
158 PF14664 RICTOR_N: Rapamycin-i 35.1 1.4E+02 0.003 35.0 8.5 112 263-376 26-142 (371)
159 PF11707 Npa1: Ribosome 60S bi 35.1 1.9E+02 0.0041 33.1 9.6 128 258-409 52-214 (330)
160 PF14228 MOR2-PAG1_mid: Cell m 35.1 1.3E+03 0.028 31.2 24.8 124 279-410 487-611 (1120)
161 KOG1061 Vesicle coat complex A 35.1 1.1E+03 0.023 30.2 24.2 124 246-375 70-193 (734)
162 KOG0162 Myosin class I heavy c 33.7 4.5E+02 0.0097 33.2 12.3 219 163-413 455-711 (1106)
163 PF11865 DUF3385: Domain of un 33.0 4.3E+02 0.0093 27.0 10.7 144 251-409 3-157 (160)
164 KOG1243 Protein kinase [Genera 32.6 3.8E+02 0.0082 33.7 11.7 153 256-411 362-517 (690)
165 KOG0212 Uncharacterized conser 31.6 1.1E+03 0.023 29.2 31.6 142 260-401 165-313 (675)
166 KOG2160 Armadillo/beta-catenin 30.6 4.5E+02 0.0098 30.3 11.2 145 264-411 85-242 (342)
167 PF00514 Arm: Armadillo/beta-c 30.2 58 0.0012 24.8 3.0 30 261-290 11-40 (41)
168 KOG0168 Putative ubiquitin fus 29.2 1E+03 0.023 30.8 14.6 184 593-779 243-441 (1051)
169 PF14911 MMS22L_C: S-phase gen 29.0 5.7E+02 0.012 30.0 11.9 122 18-159 223-346 (373)
170 KOG0213 Splicing factor 3b, su 29.0 1.3E+03 0.029 29.5 24.5 339 15-368 746-1139(1172)
171 PF00790 VHS: VHS domain; Int 28.9 5.8E+02 0.013 25.2 10.9 68 629-699 27-98 (140)
172 KOG2062 26S proteasome regulat 28.2 1.2E+02 0.0025 38.1 6.4 87 313-406 529-615 (929)
173 PF11698 V-ATPase_H_C: V-ATPas 28.0 2.4E+02 0.0051 27.6 7.3 66 342-409 43-115 (119)
174 cd06561 AlkD_like A new struct 27.4 2.5E+02 0.0055 28.9 8.3 75 318-400 121-195 (197)
175 KOG1293 Proteins containing ar 26.6 3.8E+02 0.0082 33.4 10.2 174 267-450 336-525 (678)
176 KOG4224 Armadillo repeat prote 26.6 1.1E+03 0.024 27.6 17.9 145 262-409 208-363 (550)
177 KOG1517 Guanine nucleotide bin 26.5 4E+02 0.0086 35.1 10.6 136 256-411 597-734 (1387)
178 cd03569 VHS_Hrs_Vps27p VHS dom 26.5 1.9E+02 0.004 29.0 6.7 71 602-676 39-116 (142)
179 KOG3723 PH domain protein Melt 26.5 1.2E+03 0.027 28.6 14.0 189 139-335 20-284 (851)
180 KOG0567 HEAT repeat-containing 26.0 9.6E+02 0.021 26.8 14.3 61 345-412 190-252 (289)
181 PF07637 PSD5: Protein of unkn 26.0 2.4E+02 0.0052 24.2 6.3 59 4-67 2-61 (64)
182 cd00280 TRFH Telomeric Repeat 25.4 3.9E+02 0.0086 28.2 8.7 122 47-183 30-158 (200)
183 PF10266 Strumpellin: Heredita 25.4 1.5E+03 0.033 30.4 15.9 74 564-654 528-605 (1081)
184 KOG0946 ER-Golgi vesicle-tethe 25.1 4E+02 0.0087 34.0 10.1 129 242-410 106-242 (970)
185 PF12530 DUF3730: Protein of u 24.7 9.1E+02 0.02 26.1 16.6 70 248-321 107-178 (234)
186 KOG1820 Microtubule-associated 24.6 1.7E+03 0.036 29.1 16.6 104 306-409 256-365 (815)
187 cd03567 VHS_GGA VHS domain fam 24.6 2.4E+02 0.0053 28.2 7.0 71 603-677 37-119 (139)
188 PF10274 ParcG: Parkin co-regu 24.0 1.7E+02 0.0037 30.7 5.9 82 253-334 27-111 (183)
189 cd03572 ENTH_epsin_related ENT 23.7 1.1E+02 0.0024 30.0 4.2 84 302-410 37-120 (122)
190 COG5219 Uncharacterized conser 23.5 1.1E+03 0.024 31.0 13.3 194 98-328 1036-1263(1525)
191 PF00790 VHS: VHS domain; Int 22.9 1.8E+02 0.0039 28.9 5.8 81 329-412 31-120 (140)
192 PF08569 Mo25: Mo25-like; Int 21.9 1.3E+03 0.027 26.7 15.2 200 186-407 12-236 (335)
193 KOG4413 26S proteasome regulat 21.3 5.4E+02 0.012 29.5 9.3 161 248-408 66-242 (524)
194 PF12612 TFCD_C: Tubulin foldi 20.7 4.2E+02 0.0092 27.7 8.4 111 70-198 21-137 (193)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.4e-132 Score=1230.99 Aligned_cols=978 Identities=31% Similarity=0.481 Sum_probs=835.4
Q ss_pred HhcccCCCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCC
Q 001793 12 VGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEA 91 (1012)
Q Consensus 12 ~g~kl~~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APda 91 (1012)
-|-+....|++++||++||++|+++|++++|++ .+.+++.|++.+|+++.||+|+|+|||+|||||+|||||||||||
T Consensus 8 ~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPea 85 (1266)
T KOG1525|consen 8 PGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEA 85 (1266)
T ss_pred CCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCC
Confidence 455566678999999999999999999999996 689999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccCC-ccHHHHHHHHHHHHhhcCCChhcHHHH
Q 001793 92 PYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSS 170 (1012)
Q Consensus 92 Py~~~~lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~-~~~li~~lF~~~~~~v~~~~~~~v~~~ 170 (1012)
||++.||+|||++|++||.||+|+.||||.||+||||+|+.|| ++++.+++ |++++.++|++||++++.+|+++|.+
T Consensus 86 Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k-~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~- 163 (1266)
T KOG1525|consen 86 PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVK-FCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN- 163 (1266)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhH-HHheeeccchHHHHHHHHHHHHHHHhccccHHHHH-
Confidence 9999999999999999999999999999999999999999999 55555554 99999999999999999999999999
Q ss_pred HHHHHHHHhcccccccHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCcchHH
Q 001793 171 MQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDYH 246 (1012)
Q Consensus 171 m~~Il~~vI~E~~~v~~~~ld~il~~~~~~~~---~~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~~~-~~~~~~~~~h 246 (1012)
|.+||+.+|+|.|.||.++|++||.+|.+++. ..|+++|.++++.|++.+++.+++||++.+.++. ..+....++|
T Consensus 164 ~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~h 243 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYH 243 (1266)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHH
Confidence 99999999999999999999999999976543 3899999999999999999999999999887654 4455677899
Q ss_pred HHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 001793 247 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1012)
Q Consensus 247 ~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~ 326 (1012)
++|++||+++|++|++|||||++||.+|++.+|+.||.++|+||+.+++.++.+|+++|.+|||||+|++++||++||++
T Consensus 244 e~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~ 323 (1266)
T KOG1525|consen 244 ELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVES 323 (1266)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001793 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1012)
Q Consensus 327 ~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1012)
+++||.+||++.....+..+++.|..|+|++||..+|..+|+++.+.+..+|. +++.++||+||||+.||++||++|++
T Consensus 324 ~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~Laq 402 (1266)
T KOG1525|consen 324 IKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQ 402 (1266)
T ss_pred hHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 99999999998777788888988999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHH-hhhhccCCCcchhhcccchHHHHhhhhccCCCch-hHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001793 407 IFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALE 484 (1012)
Q Consensus 407 lY~~-~~~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~~~-~ve~vl~e~LlP~~~~~~~R~~~l~~l~~~lD~~~~ka~~ 484 (1012)
+|+. |+...+.|...+..|.|||++||++||.|+.+.+ +||++++++|+|+++++++|+++|+++|+++|..+.++|.
T Consensus 403 lYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~ 482 (1266)
T KOG1525|consen 403 LYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFN 482 (1266)
T ss_pred HHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHH
Confidence 9997 4545566678889999999999999999987754 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh--ccHHHHHHHHHHhccC
Q 001793 485 KILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDSN 562 (1012)
Q Consensus 485 ~il~~k~~l~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l--~D~r~~~ll~~~~~~~ 562 (1012)
.|+++|.++|.+++.|+.+++..+.++ ..+++...|..++..||||.+.....++|++. .+..+...+..+.++.
T Consensus 483 ~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~ 559 (1266)
T KOG1525|consen 483 EILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPS 559 (1266)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999987665433 77788888999999999999999999999763 6778889999999998
Q ss_pred CCHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhcccccH-hHHHHHHHHHHhh-------ccchh--hhhHHHH
Q 001793 563 TSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQ-------KSSAN--AQFMQSC 628 (1012)
Q Consensus 563 ~~~~~~~~a~~ellkkl~~----~~~~~~~~~~Ll~R~s~~i~n~-s~V~~Ll~~~~~~-------~~~~~--~~~~~~a 628 (1012)
.+|++..-.+++.+.+++. ++.+..+.+.+..|..++.++. +.+..+++....+ ...++ ......+
T Consensus 560 ~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~ 639 (1266)
T KOG1525|consen 560 ISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLK 639 (1266)
T ss_pred hhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHH
Confidence 8998776656666666654 3457788999999999988888 7777777644321 11111 1234567
Q ss_pred HHHHHHHHhhCCcCccccH--HHHHHHHhhccccchHhHHHHHHHhccchHhhhhhccchHHHHHHHHhhcCChHHHHHH
Q 001793 629 MDILGILARFSPLLLGGTE--EELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYA 706 (1012)
Q Consensus 629 ~~LL~~iS~~~P~lf~~~~--~~L~~~L~~~~~~~~~~~L~~L~~~~k~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~A 706 (1012)
..++.++|.++|.+|.... ..++..+..+.+...+.+|+.+.+.|+......+...+.+.+.+.+++..|+|.+||+|
T Consensus 640 ~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~ 719 (1266)
T KOG1525|consen 640 KYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKLA 719 (1266)
T ss_pred HHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHHH
Confidence 8899999999999998874 66666666555567788999998888544444455566789999999999999999999
Q ss_pred HHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhccccccc-chHHHHHHHHHhhhccccccC
Q 001793 707 VHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFET-RESEIEEFIKSKILRCSNKIR 780 (1012)
Q Consensus 707 v~~L~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~~~L~sL~~ia~~~p~~f~~-~~~~I~~fiik~iL~~~~~~~ 780 (1012)
++|+.++...+.. .+.+.++.+.+.+... .++.+.+.+||+|+...|..|-+ ...++..||+|+++..++.++
T Consensus 720 ~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~ 798 (1266)
T KOG1525|consen 720 KRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPG 798 (1266)
T ss_pred hhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccc
Confidence 9999988776422 3445666777776433 49999999999999999955554 678899999999988888887
Q ss_pred CC-CCCCCCCC----hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhHHhhhhH
Q 001793 781 ND-TKACWDDR----SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLRL 852 (1012)
Q Consensus 781 ~~-~~~~W~~~----~~~~~~Ki~aLK~lvn~l~~~~~~~~--~~~~~~~~~lL~~i~-~~Gel~~~~~t~~~~~srLRL 852 (1012)
+. ....|+.. +..+.+|..+++++++||++...+.- +..+...+++|..++ +.|+...+..+|..+++++|+
T Consensus 799 e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~ 878 (1266)
T KOG1525|consen 799 EKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRL 878 (1266)
T ss_pred cccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhh
Confidence 65 56789873 34678899999999999999866421 111111566777765 899999999999999999999
Q ss_pred HHHHHHHHhhhh--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHhhhhccCCCCchHH-HH
Q 001793 853 ASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEE-EK 929 (1012)
Q Consensus 853 ~Aa~~lLKLa~~--~~~~i~~~~~~l~~~~~qD~~~~VR~~Fl~KL~k~L~~~~l~~ry~~lf~~a~~~~~~~~~~~-~k 929 (1012)
.|+.+++|+|.. +..++++++|..+.+.++|++++||..|+.|+++++.+.++|.-|++.|.+++ ..+..... .+
T Consensus 879 ~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~--~d~~~~~~~~~ 956 (1266)
T KOG1525|consen 879 TAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCA--PDVSKELLANK 956 (1266)
T ss_pred hhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhc--cchhhhhhhHH
Confidence 999999999976 57889999999888889999999999999999999999999999999998854 33211111 11
Q ss_pred HhHHHHHHHHHHHHHhhhhhhcccCcccCchhHHHHHHHHhccCCCCCCCCccccHHHHHHHHHHHHHHHHhhH
Q 001793 930 QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYWYEFRCLECTF 1003 (1012)
Q Consensus 930 ~~~~~~i~~~~~~~~r~~~~~s~~~~~~~~pE~~l~~LIhlLAHH~~pd~~~~~d~~~~~~~y~~~~~~~e~~~ 1003 (1012)
....+-...+++.+.....+.++.. ....|||+.+|.+|++||| |++...+|+..|..+-.++||++|+++
T Consensus 957 ~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~ 1027 (1266)
T KOG1525|consen 957 REEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLD 1027 (1266)
T ss_pred HHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhh
Confidence 1112222222222222222222211 5678999999999999999 999999999999999999999999875
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.07 E-value=1.3e-09 Score=138.38 Aligned_cols=220 Identities=29% Similarity=0.369 Sum_probs=193.1
Q ss_pred HHHHHhcccCCCCCC--hHHHHHHHHHH--------HHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHH
Q 001793 8 QLKEVGSKLETPPST--KDGLVKLLKQA--------ATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVA 77 (1012)
Q Consensus 8 ~~~~~g~kl~~~~~~--~~~Ll~rL~~l--------~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~a 77 (1012)
.+...|.|...++.+ +++|+..+-+. +..|..+.|+..-.+.+.++++...|+.=....|++-++..-..
T Consensus 409 ~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf~~i~~~q 488 (1266)
T KOG1525|consen 409 CLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAFNEILKRQ 488 (1266)
T ss_pred HhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHHHHHHHHH
Confidence 455788999999988 99999988776 67788888876667889999999999999999999999999999
Q ss_pred HHHHHHHh--hcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCchhhH--HHHHHHHHhhhhhhhhccC---CccHHHHH
Q 001793 78 TCICEITR--ITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRR--VVILETLAKYRSCVVMLDL---ECDELVNE 150 (1012)
Q Consensus 78 cCl~dilR--i~APdaPy~~~~lkdIf~l~~~~~~~L~d~~~~~~~~~--~~lLe~la~vks~vl~~dl---~~~~li~~ 150 (1012)
.||.+++| |.+|..||+++.++.||..|+..+..|.|+.+..|... ..+|+.++++++|+.+++. .|.++...
T Consensus 489 ~~ls~~vr~~I~~~k~~~~d~~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~~~~C~~l~~~ 568 (1266)
T KOG1525|consen 489 SRLSEEVRDYITLSKTPNTDDSMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSPSISCKELLIT 568 (1266)
T ss_pred HHHHHHHHHHhccccCCCccHhHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999 99999999999999999999999999999977544433 3599999999999999994 58888889
Q ss_pred HHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCC---hHHHHHHHHHHHHhhhhhHHHHHHH
Q 001793 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQF 227 (1012)
Q Consensus 151 lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~~~~---~~a~~la~~v~~~~~~~l~~~i~~~ 227 (1012)
||..|+.+.+..++++++..|..+|++.|.+ |+-+++..+...+..+.. ..+..++..+|..|+-++..++.+-
T Consensus 569 v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~---v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ 645 (1266)
T KOG1525|consen 569 VKEILFELGRKKQSKNLFSSMEKELIERIAE---VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEA 645 (1266)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhcc---hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHH
Confidence 9999999999999999999999999999999 888888888777654433 2678899999999999999988877
Q ss_pred HHH
Q 001793 228 LVS 230 (1012)
Q Consensus 228 f~~ 230 (1012)
++.
T Consensus 646 ls~ 648 (1266)
T KOG1525|consen 646 LSS 648 (1266)
T ss_pred hhh
Confidence 665
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=98.71 E-value=9.5e-05 Score=91.97 Aligned_cols=389 Identities=12% Similarity=0.052 Sum_probs=214.9
Q ss_pred ccccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHH
Q 001793 269 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1012)
Q Consensus 269 ~eL~se~~~~R~~At~-~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l 347 (1012)
.+|.+.+...|+.|.+ +++-|.-+. +...-+++.-+.+ .-.+.++|.-+--+.......+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G~--DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMGR--DVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCC--CchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 4455667777777765 666665543 4555566666644 334678888777777665555563 233568999
Q ss_pred HHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhccc
Q 001793 348 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1012)
Q Consensus 348 ~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~w 427 (1012)
.+=+.|+++.||.-|+++++.+-... +-+.++..+..-+.|+++-||+.|.-+++++|+..-. ....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-------lv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-------LFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-------cccccch
Confidence 99999999999999999888544322 2234556777788999999999999999999996421 1122355
Q ss_pred chHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001793 428 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFS--GFDRIEMKALEKILEQKQRLQQEMQRYLSLRQ 505 (1012)
Q Consensus 428 IP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~l~~l~~--~lD~~~~ka~~~il~~k~~l~~~~~~~l~~~~ 505 (1012)
+|. +..+..+.| +.-....+..++. .-++.. +. + ....+++++....
T Consensus 181 ~~~-L~~LL~D~d--------------------p~Vv~nAl~aL~eI~~~~~~~---l~-l------~~~~~~~Ll~~L~ 229 (746)
T PTZ00429 181 KKD-LVELLNDNN--------------------PVVASNAAAIVCEVNDYGSEK---IE-S------SNEWVNRLVYHLP 229 (746)
T ss_pred HHH-HHHHhcCCC--------------------ccHHHHHHHHHHHHHHhCchh---hH-H------HHHHHHHHHHHhh
Confidence 553 333322222 1111111111111 011110 10 0 1111222222211
Q ss_pred hhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCc-
Q 001793 506 MHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR- 584 (1012)
Q Consensus 506 ~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~ll~~~~~~~~~~~~~~~a~~ellkkl~~~~~- 584 (1012)
+. ++=.+-. +++.|+..-|+. -.+.......+..++...++
T Consensus 230 e~----~EW~Qi~---IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~A 271 (746)
T PTZ00429 230 EC----NEWGQLY---ILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPA 271 (746)
T ss_pred cC----ChHHHHH---HHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHH
Confidence 11 1112211 223333322221 11222344555555555443
Q ss_pred -hHHHHHHHHHhhhcccccHhHHHHHHHHHHhh----ccchhhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccc
Q 001793 585 -LYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ----KSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENE 659 (1012)
Q Consensus 585 -~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~----~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~L~~~~~ 659 (1012)
+.+.++.++.-..+. +.+.+...++++... ..+.+ ...-.+.+-+..|...+|.+|..|.+.+.-...+.+
T Consensus 272 VVl~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~-eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~- 347 (746)
T PTZ00429 272 VVMGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDA-ETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP- 347 (746)
T ss_pred HHHHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCc-cHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-
Confidence 566677666544322 455555544433210 01111 133456777888999999999988655543333332
Q ss_pred cchHhHHHHHHHhccchHhhhhhccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-C
Q 001793 660 IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-H 738 (1012)
Q Consensus 660 ~~~~~~L~~L~~~~k~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~l~~~~-~ 738 (1012)
.+....|.+|+..+.. ++. ..+...|+.|+.+.++.-++-||++|+.+.-.- ....+.+++.|.+-++.+. .
T Consensus 348 yIK~~KLeIL~~Lane--~Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~ 420 (746)
T PTZ00429 348 FVKLEKLRLLLKLVTP--SVA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPEL 420 (746)
T ss_pred HHHHHHHHHHHHHcCc--ccH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchh
Confidence 3667789999888743 222 236677889999889999999999998665321 1233344555555554322 2
Q ss_pred CchHHHHHHHHHhhccc
Q 001793 739 LPAVLQSLGCIAQTAMP 755 (1012)
Q Consensus 739 ~~~~L~sL~~ia~~~p~ 755 (1012)
....+.++-.|.+..|.
T Consensus 421 v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 421 LPQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHHCcc
Confidence 22345566666666664
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00088 Score=83.91 Aligned_cols=545 Identities=14% Similarity=0.153 Sum_probs=305.2
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhhcccc-CCChHHHHHHHHHHHHhhcCCCCChhhhc-----HHHHHHHHhcccCCCh
Q 001793 244 DYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQF-----HSVFSEFLKRLTDRIV 317 (1012)
Q Consensus 244 ~~h~li~el~~~~P~lL~~Vip~Le~eL~-se~~~~R~~At~~lg~m~s~~~~~~~~~~-----~~~~~~fL~R~~D~s~ 317 (1012)
.+-+.+..+|+-.| ++|.|.+-+. +.|+++|..|.-++-|+++..-..+..+- .++-..+. ....+
T Consensus 23 ~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~---~E~~~ 94 (1075)
T KOG2171|consen 23 QAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQ---SETEP 94 (1075)
T ss_pred HHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---hccch
Confidence 46777778899888 7777888877 77999999999999998876433332221 22333333 45678
Q ss_pred hHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhccCCh
Q 001793 318 AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDKSV 394 (1012)
Q Consensus 318 ~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~---~~~l~~l~eR~rDKk~ 394 (1012)
.||.+..+.+..|-.+-... .-+|+++.|..+.+++|+.-|-.|+-.+..+...-..... .+++.-+.+-|-|-..
T Consensus 95 ~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~ 173 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSS 173 (1075)
T ss_pred HHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcc
Confidence 99999999988877654322 3579999999999999999999999998877653333223 2666778888999998
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCcchhhc-ccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHh
Q 001793 395 LVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFS 473 (1012)
Q Consensus 395 ~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~-~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~l~~l~~ 473 (1012)
.||-.|.++++.+-... .+++.....| .-+|+-+.-+-- .++.. ...-++ .++
T Consensus 174 ~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~i~~~--d~~~a~---~~l- 227 (1075)
T KOG2171|consen 174 PVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------VIQDG--DDDAAK---SAL- 227 (1075)
T ss_pred hHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------hhhcc--chHHHH---HHH-
Confidence 99999999998866532 1223333344 445555443210 00000 000011 111
Q ss_pred cCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhccHH
Q 001793 474 GFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDAN 550 (1012)
Q Consensus 474 ~lD~~~~ka~~~il~~k~~-l~~~~~~~l~~~~~--~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r 550 (1012)
++|.+++..-.+ ++..+...++++-+ .+.+-++.+....-.+|-+++..-|-.. ++...+-++=
T Consensus 228 -------~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~------k~~~~~~~~l 294 (1075)
T KOG2171|consen 228 -------EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMC------KKLALLGHTL 294 (1075)
T ss_pred -------HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHh------hhchhhhccH
Confidence 112222221111 33344444555432 1222233444444445666666633322 2333334444
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHhhhcccccHhHHHHHHHHHHhhccchhhhhHHHH
Q 001793 551 VWKILMNLLDSNTSFDQAFTGRDDLLKILGAK--HRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSC 628 (1012)
Q Consensus 551 ~~~ll~~~~~~~~~~~~~~~a~~ellkkl~~~--~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a 628 (1012)
+-.++.-..+.+.| .+..++ ++ +++. ...+.+-...+-|.|.-+=.+--.+-++..+..--.+.+-..+..|
T Consensus 295 v~~~l~~mte~~~D-~ew~~~-d~----~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 295 VPVLLAMMTEEEDD-DEWSNE-DD----LDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred HHHHHHhcCCcccc-hhhccc-cc----cccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 44445544444444 222211 11 1111 1223444555666665555555555555544332122222344455
Q ss_pred HHHHHHHHhhCCcCccccHHHHHHH----HhhccccchHhHHHHHHHhccchHhhhhhcc-chHHHH-HHHHhhcCChHH
Q 001793 629 MDILGILARFSPLLLGGTEEELVNL----LKEENEIIKEGILHVLAKAGGTIREQLAATS-SSVDLL-LERLCLEGSRRQ 702 (1012)
Q Consensus 629 ~~LL~~iS~~~P~lf~~~~~~L~~~----L~~~~~~~~~~~L~~L~~~~k~~~~~~~~~~-~~~~~~-L~~la~~Gtp~~ 702 (1012)
+--|-.|+.-++.+-.++.++++.+ |.+..+.+...++.++.+.+-.+...+.... +.+.+. +..+--.++|+.
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH
Confidence 6666677777888888877666555 4455666777888888776644322211111 112222 223444577888
Q ss_pred HHHHHHHHHhhcCCCccc----hHHHHHHHHHHhhh-hcC--CCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhcc
Q 001793 703 AKYAVHALAAITKDDGLK----SLSVLYKRLVDMLE-EKT--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRC 775 (1012)
Q Consensus 703 AK~Av~~L~~~~~~~~~~----~~~~l~~~l~~~l~-~~~--~~~~~L~sL~~ia~~~p~~f~~~~~~I~~fiik~iL~~ 775 (1012)
-.||+.++....-.-... ++..+++.....|. +++ -....++++|.+|.-+-.-|...-+.++.++ +++|..
T Consensus 449 ~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L-~~~L~n 527 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLL-KNFLQN 527 (1075)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH-HHHHhC
Confidence 889999987443222122 33444443333343 222 4455889999999999999998888999986 455554
Q ss_pred ccccCCCCCCCCCCChhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCC-CChhHHhhhhHHH
Q 001793 776 SNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIE-SSSVDKAHLRLAS 854 (1012)
Q Consensus 776 ~~~~~~~~~~~W~~~~~~~~~Ki~aLK~lvn~l~~~~~~~~~~~~~~~~~lL~~i~~~Gel~~~~~-t~~~~~srLRL~A 854 (1012)
+.. ++-.+.+.|. +.|++-.-++...+...+.+..++.++-.+ .+|+.....+ ++....+|-|++-
T Consensus 528 ~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~~-~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 528 ADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLEL-QGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred CCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHhh-cccchhhccccHHHHHHHHHHHHH
Confidence 321 1223344444 666554444444445666667777776432 3444443332 3456666666655
Q ss_pred HH
Q 001793 855 AK 856 (1012)
Q Consensus 855 a~ 856 (1012)
+.
T Consensus 595 il 596 (1075)
T KOG2171|consen 595 IL 596 (1075)
T ss_pred Hh
Confidence 43
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=98.19 E-value=0.0073 Score=75.52 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=95.6
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 001793 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1012)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1012)
|--+....+..|++..-++..+...|.+.|+.+|-.|.+++|.+-. ..-.+.+-....+-..|.+|-||...+-
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4455556677899999999999999999999999999999996543 2233455556666678999999999999
Q ss_pred HhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh
Q 001793 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1012)
Q Consensus 326 ~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~ 373 (1012)
++.++...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 999988888864323456778888899999999999999988775433
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.14 E-value=0.00048 Score=83.35 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001793 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1012)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1012)
.|-.+..++...|+++.-++..+...|.++|+.+|-.|.+++|.+-.. +++ +.+...-.+-.+|.+|.||.+.+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~---~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA---EPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH---HHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh---hHHHHHHHHHhcCCchHHHHHHH
Confidence 477788889999999999999999999999999999999999996522 233 55566666667799999999999
Q ss_pred HHhHHHHhcCCCCCChhH-HHHHHHHHcCCchhHHHHHHHHHHHHh
Q 001793 325 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 369 (1012)
Q Consensus 325 ~~~~~il~~~~~~~~~~~-i~~~l~~rL~D~DekVR~aaV~~i~~l 369 (1012)
-+..++....|+. ... +.+.+...|.|+|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888863 334 789999999999999999999999877
No 7
>PRK09687 putative lyase; Provisional
Probab=97.81 E-value=0.00016 Score=80.56 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=103.1
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhc-ccCCChhHHHHHH
Q 001793 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 324 (1012)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R-~~D~s~~VR~~~v 324 (1012)
...+..|...-.. .+++.+..-+.++|..+|..|+..||++ +.++... +..+.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~----~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQ----DNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccch----HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4455556555432 2334444456789999999999999985 4433211 2333333323 4999999999999
Q ss_pred HHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001793 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1012)
Q Consensus 325 ~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1012)
...+++=...+. ....+.+.+...+.|.|..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+.+|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999885221111 12367788888999999999999999987432 355677888999999999999999999
Q ss_pred HHH
Q 001793 405 ADI 407 (1012)
Q Consensus 405 ~~l 407 (1012)
|++
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 8
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.70 E-value=0.0098 Score=76.27 Aligned_cols=270 Identities=19% Similarity=0.192 Sum_probs=156.0
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001793 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1012)
Q Consensus 297 ~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~ 376 (1012)
|...|...-+.-|+=..--.+.||.+++++...|....|+-.-..++-.++..|++|+--.||-|||.-++.......+.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 44444444444444555778999999999999998887763334688899999999999999999999998544333222
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHHhhh-hccCCCch---hHHHHhhh
Q 001793 377 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGSD---TIESVLCG 452 (1012)
Q Consensus 377 v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~~~-y~~d~~~~---~ve~vl~e 452 (1012)
-.+-...+++|+.|--..|||.+|+-+-.+|-.+ +.|.-||+-.-... .++|-+.. +|-.+|.+
T Consensus 890 -~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 890 -IFQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred -HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 2344668899999999999999999999999874 45666776655543 36664432 33333333
Q ss_pred cCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcC
Q 001793 453 SLF-PTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFA 531 (1012)
Q Consensus 453 ~Ll-P~~~~~~~R~~~l~~l~~~lD~~~~ka~~~il~~k~~l~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fp 531 (1012)
-.| |.+- ..|..++. ..+......++..+ ++.-+ .+...+..+-+..-
T Consensus 958 lWF~p~~~--------------~~d~~~~~--~kI~~~~~vv~~~~----d~~~~-----------~~eqLl~~ilk~~~ 1006 (1692)
T KOG1020|consen 958 LWFTPVPE--------------VNDQPAKA--RKISLEVDVVMSQV----DLMND-----------WLEQLLDHILKFYL 1006 (1692)
T ss_pred HhccCCCc--------------ccccHHHH--HhhHHHHHHHHHHH----HHhcC-----------hHHHHHHHHHHHHH
Confidence 222 3221 02222211 11211111111111 11100 01111111111100
Q ss_pred CchhHHHHHHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCchHHHHHHH--HHhhhcccccHhHHHHH
Q 001793 532 EPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTL--SMKCSYLLFNKEHVKEI 609 (1012)
Q Consensus 532 d~~ka~~~l~kf~~l~D~r~~~ll~~~~~~~~~~~~~~~a~~ellkkl~~~~~~~~~~~~L--l~R~s~~i~n~s~V~~L 609 (1012)
.. .-.++.+.++..+=.+...++-.|...+. ...-.+...+=.+......++.+| +.|+-|.++.++||..|
T Consensus 1007 ~~-~~~~~~~~v~~~~v~~~~~L~~~cl~~~i-----~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL 1080 (1692)
T KOG1020|consen 1007 LK-TMKESVKPVALAKVTHVLNLLTHCLVEKI-----SEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITL 1080 (1692)
T ss_pred hh-hhhhhhhHHHHhhcchHHHHHHHHHHHHH-----HhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHh
Confidence 00 11233445555455566666665553221 111112233323334467788885 66999999999999999
Q ss_pred HHHHHh
Q 001793 610 LLEVAA 615 (1012)
Q Consensus 610 l~~~~~ 615 (1012)
-=++..
T Consensus 1081 ~PYL~s 1086 (1692)
T KOG1020|consen 1081 QPYLTS 1086 (1692)
T ss_pred hhHHhc
Confidence 887753
No 9
>PRK09687 putative lyase; Provisional
Probab=97.69 E-value=0.00032 Score=78.11 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.7
Q ss_pred hhhhhhhcc-ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 001793 262 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1012)
Q Consensus 262 ~Vip~Le~e-L~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 340 (1012)
.++|.|..- +..++..+|..|+..||.+-+. +.. .-+.+...+..-..|.++.||...+...+.+ . .
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~----~ 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N----D 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-ccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C----C
Confidence 455666655 5667899999999999998332 211 1244556677778899999999999887642 1 1
Q ss_pred hHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001793 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1012)
Q Consensus 341 ~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1012)
.+.++.|...|.|+|..||..|+.+++.+. .-+.+....|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~-----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNK-----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 368899999999999999999999999662 22456677788899999999999999999983
No 10
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.60 E-value=0.13 Score=66.69 Aligned_cols=163 Identities=20% Similarity=0.213 Sum_probs=129.4
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhc---cccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHH
Q 001793 246 HEVIYDVYRCSPQILSGVVPYLTG---ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1012)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~---eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~ 322 (1012)
-.+|+..--..-++..+.=|.|.. -|..+...+|..|.+.|+.|...+. ..-.+|+.=.+--||++|-+.+||-+
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHH
Confidence 344444444444455544444433 3445679999999999999998865 57789999999999999999999999
Q ss_pred HHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhc--CCCCHHHHHHHHHhhccCChhHHHHH
Q 001793 323 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL--NSIPVETVKLVAERLRDKSVLVKRYT 400 (1012)
Q Consensus 323 ~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~--~~v~~~~l~~l~eR~rDKk~~VR~~A 400 (1012)
.|+..+.++..+|+ ...+.-+.+..|..|+---||..|++.++++....+ ..++ ++...+..|+-|---.|-+-+
T Consensus 875 aldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-~~cakmlrRv~DEEg~I~kLv 951 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-DMCAKMLRRVNDEEGNIKKLV 951 (1692)
T ss_pred HHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-HHHHHHHHHhccchhHHHHHH
Confidence 99999999999986 456888999999999999999999999999865443 3333 455566799999988899999
Q ss_pred HHHHHHHHHHhhh
Q 001793 401 MERLADIFRGCCL 413 (1012)
Q Consensus 401 i~~L~~lY~~~~~ 413 (1012)
-+.+-++|-.=++
T Consensus 952 ~etf~klWF~p~~ 964 (1692)
T KOG1020|consen 952 RETFLKLWFTPVP 964 (1692)
T ss_pred HHHHHHHhccCCC
Confidence 9999999986443
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.37 E-value=0.24 Score=59.95 Aligned_cols=240 Identities=13% Similarity=0.227 Sum_probs=159.5
Q ss_pred hHHHHHHHHHhhCchhhhh-hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHH
Q 001793 244 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1012)
Q Consensus 244 ~~h~li~el~~~~P~lL~~-Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~ 322 (1012)
++-.-+..+++..|+++.. ++|.+..-|...|..++..|+.++..+ ..++..+..--|..++...+...+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4677888899999999988 799999999999999999999999999 33221222334555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--hHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 001793 323 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 400 (1012)
Q Consensus 323 ~v~~~~~il~~~~~~~~~--~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~A 400 (1012)
.++....+....+. .. ..+++.+...+...+..|+.+++..+..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99998875544432 23 4688999999999999999999999986655332 223446677888889999999998
Q ss_pred HHHHHHHHHHhhhhccCCCcchhhcccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001793 401 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 480 (1012)
Q Consensus 401 i~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~l~~l~~~lD~~~~ 480 (1012)
+..+..+-..+ |..+.+..+ .+..+ . ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~-----------------~~~v~~~~~-------~~~~l-----~-~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSN-----------------PPAVFNQSL-------ILFFL-----L-YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHC-----------------HHHHGTHHH-------HHHHH-----H-CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhccc-----------------chhhhhhhh-------hhhee-----c-CCCChhHHHHHHHHHhhcccccch
Confidence 88877765542 222322111 11111 1 123445566665566666666544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCch
Q 001793 481 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA 534 (1012)
Q Consensus 481 ka~~~il~~k~~l~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ 534 (1012)
+- +-..+.+|+ ++..+++++..+-+.|..++..+|...
T Consensus 338 ~~----------Il~eL~~~l------~~~~d~~~~~~~i~~I~~la~~~~~~~ 375 (526)
T PF01602_consen 338 KE----------ILDELLKYL------SELSDPDFRRELIKAIGDLAEKFPPDA 375 (526)
T ss_dssp HH----------HHHHHHHHH------HHC--HHHHHHHHHHHHHHHHHHGSSH
T ss_pred hh----------HHHHHHHHH------HhccchhhhhhHHHHHHHHHhccCchH
Confidence 32 223344443 112345678888888888888775543
No 12
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.67 Score=55.81 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHhcccc-cccHHHHHHHHHhhcCCC---ChHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCC
Q 001793 166 SVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHS 241 (1012)
Q Consensus 166 ~v~~~m~~Il~~vI~E~~-~v~~~~ld~il~~~~~~~---~~~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~~~~~~~~ 241 (1012)
.+....+.+.+++++..+ .-.+++|..+..-+..+. .+.|+.--.+||+..++.+..-+. + .
T Consensus 105 lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~---~-----------r 170 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVL---T-----------R 170 (885)
T ss_pred HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcc---c-----------C
Confidence 344444444444444432 356788888887775432 237888788899988876655432 0 0
Q ss_pred cchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHH
Q 001793 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1012)
Q Consensus 242 ~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~ 321 (1012)
. |--.||-+=.-.++..+.+|..|+..+-..+-.....+...-..--....-+.+|.+|+||.
T Consensus 171 p-----------------l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 171 P-----------------LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred c-----------------hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 0 11123333334557799999999999998876654333322222223444567999999999
Q ss_pred HHHHHhHHHHhcCCCC--CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001793 322 SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1012)
Q Consensus 322 ~~v~~~~~il~~~~~~--~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1012)
....+...+|..+|++ .-...|++++..|-.|+||.|-++||+---.+|.
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 9999999999888763 1235899999999999999999999998877764
No 13
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.16 E-value=0.042 Score=71.20 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=77.6
Q ss_pred hhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHH
Q 001793 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1012)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i 343 (1012)
+|.|..-+..+|..+|..|+..||.+-..+. .....+.-..|.++.||...++..+.+ ++ .+.
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~---------~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a 839 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPPD---------DVAAATAALRASAWQVRQGAARALAGA----AA----DVA 839 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcch---------hHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cch
Confidence 3445555666778888888888887733211 111233334667788888888876541 11 245
Q ss_pred HHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 001793 344 LTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1012)
Q Consensus 344 ~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~ 405 (1012)
++.|...|.|+|..||.+|+.+++.+ ..+......+...+.|....||++|...|.
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW------PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 67777778888888888888877753 224455666677777888888888887775
No 14
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.01 E-value=0.016 Score=60.27 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.8
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 001793 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1012)
Q Consensus 316 s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~ 395 (1012)
+|.||.-++-..+++...+|. .....++.+..+|.|+|+.||..|+..+..+....+-.+.+.++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999998885 345788899999999999999999999999999888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 001793 396 VKRYTMERLADIFRGC 411 (1012)
Q Consensus 396 VR~~Ai~~L~~lY~~~ 411 (1012)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 15
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.97 E-value=0.0048 Score=55.66 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.0
Q ss_pred HHhcc-cCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 001793 308 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 386 (1012)
Q Consensus 308 fL~R~-~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~ 386 (1012)
.+... +|.++.||...+...+.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 34445 799999999999887731 13588999999999999999999999998653 345667778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 001793 387 ERLRD-KSVLVKRYTMERLA 405 (1012)
Q Consensus 387 eR~rD-Kk~~VR~~Ai~~L~ 405 (1012)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87776 45678999999987
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.77 E-value=0.0075 Score=77.95 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.8
Q ss_pred hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhH
Q 001793 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1012)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1012)
.++.|-..|..+++.+|..|++.||+.-. +..-........|.++.||...++....+..+.+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55677777889999999999999998531 33444555566899999999999998876433221
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001793 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1012)
Q Consensus 343 i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1012)
.+.|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||.+|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235556778899999999999988654211 1 2346688999999999999999974
No 17
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1.5 Score=54.13 Aligned_cols=282 Identities=16% Similarity=0.150 Sum_probs=165.1
Q ss_pred hhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC
Q 001793 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 337 (1012)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~ 337 (1012)
+++.-+.-.|...|++.|--+==+|.-++|.|++. +++ |++...--.-.+-.++-||.+.+-++-+++..-|+
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~---Ema---rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~- 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMA---RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD- 175 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHh---HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch-
Confidence 34444566788999999988889999999999975 233 33333333333446889999999999999988886
Q ss_pred CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccC
Q 001793 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN 417 (1012)
Q Consensus 338 ~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~ 417 (1012)
..+-.+....++|.|-|..|=.+++.-+.++...+++ .+ ++-|| ....|-++-+....
T Consensus 176 -l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l----~~fr~--------l~~~lV~iLk~l~~---- 233 (866)
T KOG1062|consen 176 -LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----AL----SYFRD--------LVPSLVKILKQLTN---- 233 (866)
T ss_pred -HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HH----HHHHH--------HHHHHHHHHHHHhc----
Confidence 3456778888999999999999888887766554432 22 11111 12222222222111
Q ss_pred CCcc-hhhcccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q 001793 418 GSIN-QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQE 496 (1012)
Q Consensus 418 ~~~~-~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~l~~l~~~lD~~~~ka~~~il~~k~~l~~~ 496 (1012)
+... .-.+..||+--|+ -|.-|++.+++.-|+++...+..++.+..+
T Consensus 234 ~~yspeydv~gi~dPFLQ----------------------------i~iLrlLriLGq~d~daSd~M~DiLaqvat---- 281 (866)
T KOG1062|consen 234 SGYSPEYDVHGISDPFLQ----------------------------IRILRLLRILGQNDADASDLMNDILAQVAT---- 281 (866)
T ss_pred CCCCCccCccCCCchHHH----------------------------HHHHHHHHHhcCCCccHHHHHHHHHHHHHh----
Confidence 0000 0123333333332 355677888888888888877777665432
Q ss_pred HHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCch---hHHHHHHHHHhhccHHHHHH-HHHHhcc-CCCHHHHHHH
Q 001793 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWKI-LMNLLDS-NTSFDQAFTG 571 (1012)
Q Consensus 497 ~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~---ka~~~l~kf~~l~D~r~~~l-l~~~~~~-~~~~~~~~~a 571 (1012)
-+ +........-|-.+++-|....|++. .|...|-||-.-+|+++.+. |..+... +.|-.-+.+=
T Consensus 282 ------nt----dsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH 351 (866)
T KOG1062|consen 282 ------NT----DSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH 351 (866)
T ss_pred ------cc----cccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH
Confidence 01 11111222344555666666666654 56677888887677766542 3333211 2344444445
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhhhcccccHhHHHHHHHHH
Q 001793 572 RDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEV 613 (1012)
Q Consensus 572 ~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~ 613 (1012)
+.-++.-+.++-+ .++.=-.-.++.++|.+||..+++.+
T Consensus 352 r~tIleCL~DpD~---SIkrralELs~~lvn~~Nv~~mv~eL 390 (866)
T KOG1062|consen 352 RSTILECLKDPDV---SIKRRALELSYALVNESNVRVMVKEL 390 (866)
T ss_pred HHHHHHHhcCCcH---HHHHHHHHHHHHHhccccHHHHHHHH
Confidence 5666667766532 11111111356688999988877754
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=2 Score=51.72 Aligned_cols=285 Identities=14% Similarity=0.146 Sum_probs=168.5
Q ss_pred HHHHHHHHHhhCchhhhh------hhhhhhccccCCChHHHHH----HHHHHHHhhcCCCCChhhhcHHHHHHHHhcccC
Q 001793 245 YHEVIYDVYRCSPQILSG------VVPYLTGELLTDQLDTRLK----AVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 314 (1012)
Q Consensus 245 ~h~li~el~~~~P~lL~~------Vip~Le~eL~se~~~~R~~----At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D 314 (1012)
.+...+++|...-..... .+-.|..-.+..+...|.. |-+.....+|. .+.---.+++-.-|..|.|
T Consensus 151 ~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~---~~EPyiv~~lp~il~~~~d 227 (569)
T KOG1242|consen 151 RAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP---PFEPYIVPILPSILTNFGD 227 (569)
T ss_pred HhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC---CCCchHHhhHHHHHHHhhc
Confidence 455666666664333221 2233334444444444432 33333333332 2222225566667777889
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhcc
Q 001793 315 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRD 391 (1012)
Q Consensus 315 ~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~---~~l~~l~eR~rD 391 (1012)
+.+.||.+...+++.++..-+.. -.+.++..+..-+.+.-++=-.++++.++-++......++. +++..+.+.+-|
T Consensus 228 ~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D 306 (569)
T KOG1242|consen 228 KINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD 306 (569)
T ss_pred cchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc
Confidence 99999999999888766543322 24567777777777777777788888888777655444433 567789999999
Q ss_pred CChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHHhhhhccCCC-chhHHHHhhhcCCCCCCCHHHHHHHHHH
Q 001793 392 KSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPTGFSVKDRVRHWVR 470 (1012)
Q Consensus 392 Kk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~-~~~ve~vl~e~LlP~~~~~~~R~~~l~~ 470 (1012)
-|+.||+.++.+|-++=... ++ ..+.-+=.++++|+-++.-+ .+.++.+..+ +
T Consensus 307 T~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t-----------------t 360 (569)
T KOG1242|consen 307 TKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGAT-----------------T 360 (569)
T ss_pred CCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhcce-----------------e
Confidence 99999999999998765542 11 12344455667765443311 2233433332 3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhhccHH
Q 001793 471 IFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDAN 550 (1012)
Q Consensus 471 l~~~lD~~~~ka~~~il~~k~~l~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r 550 (1012)
+..+.|+.+..-+.-++.+.-. +-+..++++...+|..+++.-+||......+..+. +.
T Consensus 361 FV~~V~~psLalmvpiL~R~l~-----------------eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Ll----p~ 419 (569)
T KOG1242|consen 361 FVAEVDAPSLALMVPILKRGLA-----------------ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLL----PG 419 (569)
T ss_pred eeeeecchhHHHHHHHHHHHHh-----------------hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHh----hH
Confidence 3445566554444444333211 01223445666667788888888888776666665 44
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHhcCC
Q 001793 551 VWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1012)
Q Consensus 551 ~~~ll~~~~~~~~~~~~~~~a~~ellkkl~~~ 582 (1012)
+...+.+. .|++.. ...++...+++++|..
T Consensus 420 lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 420 LKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred HHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 55555555 666655 3346777788888764
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.61 E-value=3.4 Score=51.97 Aligned_cols=541 Identities=16% Similarity=0.163 Sum_probs=273.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCC-CCCCCc--chH-HHHHHHHHhhCchhhhhhhhhhhccccC----CC
Q 001793 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSH--IDY-HEVIYDVYRCSPQILSGVVPYLTGELLT----DQ 275 (1012)
Q Consensus 204 ~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~~~-~~~~~~--~~~-h~li~el~~~~P~lL~~Vip~Le~eL~s----e~ 275 (1012)
..+.+-.++++...+-+.+++-....++++.=+ .++.+. +.+ --+..-|-.+.|+...+-+|-|..-+.+ .=
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 567888888888888888777766666664311 122222 122 2334445566777766666555443321 11
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCChhhhcHHHHHHHHhcc--cCCChhHHHHHHHHhHHHHhcCCC--CCChhHHH
Q 001793 276 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1012)
Q Consensus 276 ~~~R~~At~~lg~m~s~-----~--~~~~~~~~~~~~~~fL~R~--~D~s~~VR~~~v~~~~~il~~~~~--~~~~~~i~ 344 (1012)
-.+--.|..+.+++... + +.++.......+.+-++|+ +|.+-+||...+.+.++++.+-.+ +.+.+.++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222333333333321 1 2344556678888888875 799999999999999998886544 23445677
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 001793 345 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1012)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~~~----~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~ 420 (1012)
..+.+|+. .|--|+.||+|++.++...++ .+-.+++..++.=+|--....|.++...+-++-..|...+ +..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~--~~~ 689 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSI--PAE 689 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHH
Confidence 88889986 688899999999999875433 3445777788777776666778887777777776663211 111
Q ss_pred c-hhhcccchHHHHhhhhccCCCchhHHHHhhhcCC--CCCCCHHHHHH---HHHHHHh--cCCHHHHHHHHHHHHHHHH
Q 001793 421 N-QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLF--PTGFSVKDRVR---HWVRIFS--GFDRIEMKALEKILEQKQR 492 (1012)
Q Consensus 421 ~-~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~Ll--P~~~~~~~R~~---~l~~l~~--~lD~~~~ka~~~il~~k~~ 492 (1012)
. ..-++.||+-|- ..|++..+.--.+..+++ |...-.+-+-. .++.+.. .+-..+..+...++..-..
T Consensus 690 ~~e~vL~el~~Lis----esdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~ 765 (1233)
T KOG1824|consen 690 LLEAVLVELPPLIS----ESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVI 765 (1233)
T ss_pred HHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHh
Confidence 1 112344444332 223331111111112221 21111111111 1111111 1122222222222111111
Q ss_pred HHHHHHHHHHHHhhhcC--------CCcHHHHHHHHHHHHHHhhhcCCchhH--HHHHHHHH--hhccH-HHHHHHHHH-
Q 001793 493 LQQEMQRYLSLRQMHQD--------GDAPEIQKKILFCFRVMSRSFAEPAKA--EENFLILD--QLKDA-NVWKILMNL- 558 (1012)
Q Consensus 493 l~~~~~~~l~~~~~~~~--------~~~~~~~~kl~~~i~~Ls~~fpd~~ka--~~~l~kf~--~l~D~-r~~~ll~~~- 558 (1012)
-+..-..|..+....+. +-....--.+.+++..|+..+|+..++ ..-.+-|. +.+|+ ++|-+|..=
T Consensus 766 t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGE 845 (1233)
T KOG1824|consen 766 TKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGE 845 (1233)
T ss_pred cCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhh
Confidence 11111112222111110 111233334778888899999965554 22334444 23443 333333211
Q ss_pred ------hccCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhccccc--HhHHHHHHHHHHhhccchhhhhHHHHHH
Q 001793 559 ------LDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCMD 630 (1012)
Q Consensus 559 ------~~~~~~~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n--~s~V~~Ll~~~~~~~~~~~~~~~~~a~~ 630 (1012)
.+|.-.|++ -+++-+++++ .|..+.--|-.+.+-.+ ...+|.+++.+... ... .----|.
T Consensus 846 lgr~~~~s~~~e~~~------~iieaf~sp~--edvksAAs~ALGsl~vgnl~~yLpfil~qi~sq--pk~--QyLLLhS 913 (1233)
T KOG1824|consen 846 LGRRKDLSPQNELKD------TIIEAFNSPS--EDVKSAASYALGSLAVGNLPKYLPFILEQIESQ--PKR--QYLLLHS 913 (1233)
T ss_pred hccCCCCCcchhhHH------HHHHHcCCCh--HHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcc--hHh--HHHHHHH
Confidence 111111211 2223333332 34444444433444442 23577788766432 111 1112356
Q ss_pred HHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhccchHhhhhhccchHHHHHHHHhhcCChHHHHHHHHHH
Q 001793 631 ILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHAL 710 (1012)
Q Consensus 631 LL~~iS~~~P~lf~~~~~~L~~~L~~~~~~~~~~~L~~L~~~~k~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~L 710 (1012)
+...|+...+..|++.++.+-.+|...-+..-+++=-+++.|-|.+- -...+++.++|+..-..|.|..=--+|.++
T Consensus 914 lkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsav 990 (1233)
T KOG1824|consen 914 LKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSAV 990 (1233)
T ss_pred HHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhhee
Confidence 77789999999999999999999887544334454445555544321 123457899999988888764322222222
Q ss_pred -HhhcCCCccchHHHHHH-HHHHh---hhhcC-C-CchHHHHHHHHHhhcccccccchHHHHHHHH
Q 001793 711 -AAITKDDGLKSLSVLYK-RLVDM---LEEKT-H-LPAVLQSLGCIAQTAMPVFETRESEIEEFIK 769 (1012)
Q Consensus 711 -~~~~~~~~~~~~~~l~~-~l~~~---l~~~~-~-~~~~L~sL~~ia~~~p~~f~~~~~~I~~fii 769 (1012)
..+++... .+..+.+ .|-+. +.+.+ + -...|+++...+.+-|....+--+++...++
T Consensus 991 Kfsisd~p~--~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 991 KFSISDQPQ--PIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred eeeecCCCC--ccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 11223222 1222222 22222 22222 1 1235778888888888777665555554443
No 20
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=2.5 Score=50.37 Aligned_cols=413 Identities=15% Similarity=0.138 Sum_probs=215.5
Q ss_pred HHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCC-CCCcc-----hHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHH
Q 001793 207 RLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRP-GHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR 279 (1012)
Q Consensus 207 ~la~~v~~~~-~~~l~~~i~~~f~~~l~~~~~~-~~~~~-----~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R 279 (1012)
++.++..+++ .+++...|.+..++.++..+.. .+.++ -++-+=.+--.+.-.++.+|++.+ ...|..+|
T Consensus 26 k~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf----~D~d~~vR 101 (675)
T KOG0212|consen 26 KLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCF----SDQDSQVR 101 (675)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhc----cCccceee
Confidence 4444444433 4677777777777766543221 11111 112222222223334444455544 44788899
Q ss_pred HHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHH---HHHhHHHHhcCCCCCChhHHHHHHHHHcCCchh
Q 001793 280 LKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1012)
Q Consensus 280 ~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~---v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~De 356 (1012)
--|.+.+=.+-..-..++..-++.+|....+=+.|.+..||-.. -...++|.....+.-..+++++-|.+|+.+.+.
T Consensus 102 yyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~ 181 (675)
T KOG0212|consen 102 YYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINP 181 (675)
T ss_pred eHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCc
Confidence 99988877666544446777889999999999999999998542 233444444333222356899999999999999
Q ss_pred HHHHHHHHHHHHhhh-hhcCCC--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccC-C--C-------cc--
Q 001793 357 NVRKQVVAVICDVAC-HALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G--S-------IN-- 421 (1012)
Q Consensus 357 kVR~aaV~~i~~la~-~~~~~v--~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~-~--~-------~~-- 421 (1012)
-+|..+|.-+.-+.. ..++-+ -++++.-+..=.-|-..+||..+=+.|+.+-+....+... + . ..
T Consensus 182 ~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 182 MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC
Confidence 999999998875543 112211 1244555566678889999999999999988876543321 0 0 00
Q ss_pred ------hhhcccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHHH----HHHHHH--HHhcCCHHHHHHHHHHHHH
Q 001793 422 ------QNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMKALEKILEQ 489 (1012)
Q Consensus 422 ------~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R----~~~l~~--l~~~lD~~~~ka~~~il~~ 489 (1012)
...+.||-.- .++.+...-..-.-+++.++|.-.+.++. ...... +.+-.+....+ ..+ .
T Consensus 262 s~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~--~~i--d 333 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEF----VKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLK--EEI--D 333 (675)
T ss_pred CcHHHHHHHHHHHHHH----hcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhc--ccc--c
Confidence 0123444211 12222111111122356788875444332 222222 22222222111 000 0
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHh---hhcCCchhHHHH------HHHHHhhccHHH---HHHHHH
Q 001793 490 KQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEEN------FLILDQLKDANV---WKILMN 557 (1012)
Q Consensus 490 k~~l~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls---~~fpd~~ka~~~------l~kf~~l~D~r~---~~ll~~ 557 (1012)
-..+-..+++|+. .+.. .+++. +.+|+. ..+|...-...+ |..+..-.|.-+ .-++..
T Consensus 334 ~~~ii~vl~~~l~-------~~~~--~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~ 403 (675)
T KOG0212|consen 334 YGSIIEVLTKYLS-------DDRE--ETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLAS 403 (675)
T ss_pred hHHHHHHHHHHhh-------cchH--HHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHH
Confidence 0111122333322 1222 22222 234554 444544332211 111111112211 122222
Q ss_pred HhccCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhcccccHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHh
Q 001793 558 LLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILAR 637 (1012)
Q Consensus 558 ~~~~~~~~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~ 637 (1012)
+++...+. ..++....++..-.....+.+.--.|.-|.-++..|.|+|=.-+..+-.. ..+-...+..-+.|+.+=-
T Consensus 404 i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln~iLl 480 (675)
T KOG0212|consen 404 ICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALNTILL 480 (675)
T ss_pred HhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHHhhhc
Confidence 23322222 22334444554444443344555567888889999999986655433221 3344466777899999999
Q ss_pred hCCcCcc
Q 001793 638 FSPLLLG 644 (1012)
Q Consensus 638 ~~P~lf~ 644 (1012)
+.|++|+
T Consensus 481 TStELf~ 487 (675)
T KOG0212|consen 481 TSTELFQ 487 (675)
T ss_pred ccHHHHH
Confidence 9999985
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.48 E-value=0.4 Score=58.12 Aligned_cols=242 Identities=18% Similarity=0.266 Sum_probs=155.4
Q ss_pred hhcHHHHHHHHHHHHhccccc-----ccHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhHHHHH--------HHHHH
Q 001793 164 PESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIK--------QFLVS 230 (1012)
Q Consensus 164 ~~~v~~~m~~Il~~vI~E~~~-----v~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~--------~~f~~ 230 (1012)
.+.|.......+..++.+.+. +..+++..|+..+..... ...+.|.+++..-+.. ...+. .-+.+
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKS 167 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHH
Confidence 356777777778777777665 556777777776654332 3344444444444321 12222 22333
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHhhCchhhhh-----hhhhhhccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHH
Q 001793 231 SMSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSV 304 (1012)
Q Consensus 231 ~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~-----Vip~Le~eL~se~~~~R~~At~~lg~m~s~~-~~~~~~~~~~~ 304 (1012)
.+... .+....++++++.++.+.+|+.+.. +++.+..+|.++|+-+|+.|++++++|-..+ |..+..+. .+
T Consensus 168 l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~-gi 244 (503)
T PF10508_consen 168 LMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQ-GI 244 (503)
T ss_pred HHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhC-CH
Confidence 33221 1123457999999999999988765 5689999999999999999999999998855 33333222 34
Q ss_pred HHHHHhcc----cCC-ChhHHH-HHHHHhHHHHhcCCCC--CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh--c
Q 001793 305 FSEFLKRL----TDR-IVAVRM-SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--L 374 (1012)
Q Consensus 305 ~~~fL~R~----~D~-s~~VR~-~~v~~~~~il~~~~~~--~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~--~ 374 (1012)
+....... .|. ...+.+ .-+++.+.+...+|.. ..-+.++..+.+.+...|...|..|+.+++.++... .
T Consensus 245 ~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 245 FDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred HHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 44344333 333 222221 2235555555444431 122456666676777899999999999999887422 1
Q ss_pred CCC----CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 375 NSI----PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 375 ~~v----~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
..+ +. .+++.++++.+.-+..+|..|+..++.++..
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 112 22 4588999999999999999999999999964
No 22
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.35 E-value=0.043 Score=58.95 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=105.6
Q ss_pred hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhH
Q 001793 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1012)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1012)
+++.+...+.+....+-..|..+++.++..-+..|....+.+....++|..|....||....++...++.+-+.. ..
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~ 130 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PK 130 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----H
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HH
Confidence 344566666677778888999999999987776777677888889999999999999999999999887754411 24
Q ss_pred H-HHHHHHHcCCchhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001793 343 I-LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1012)
Q Consensus 343 i-~~~l~~rL~D~DekVR~aaV~~i~~la~~~~---~~v~-----~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~ 412 (1012)
+ ...+..-..+-..+||..++..+..+..... ..+. ..+...+..-+.|.++.||+.|-..+..+|+.+-
T Consensus 131 ~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 131 ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 5 7788888999999999999998887654333 2221 3467899999999999999999999999999763
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.33 E-value=4.8 Score=50.67 Aligned_cols=365 Identities=16% Similarity=0.180 Sum_probs=201.7
Q ss_pred CChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHH
Q 001793 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKD 100 (1012)
Q Consensus 21 ~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkd 100 (1012)
..+++|.++|++-+-.| |-| +...+.+.|+ ++|.-++.+||-+..-|++=+- .--..+|++.
T Consensus 24 MAtsDLm~eLqkdsi~L---d~d-------Se~kvv~~lL--klL~D~ngEVQnlAVKClg~lv------sKvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL---DDD-------SERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLV------SKVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc---ccc-------chhHHHHHHH--HHHhccCcHHHHHHHHHHHHHH------hhchHHHHHH
Confidence 56778888888763333 222 3334444443 4678899999999999987544 1112345555
Q ss_pred HHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccCCccHHHHHHHHHHHHh----hcC-CChhcHHHHHHHHH
Q 001793 101 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAV----ASD-DHPESVLSSMQTIM 175 (1012)
Q Consensus 101 If~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~----v~~-~~~~~v~~~m~~Il 175 (1012)
+-.=+..-. +++.+..-|.-...+...++++.-++ ...+-...|+.|... +.. +...-+.-..+|||
T Consensus 86 ~ve~L~~~~--~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 86 IVENLCSNM--LSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred HHHHHhhhh--ccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 443333321 33334433444455555555543210 123333444444433 222 22223666678888
Q ss_pred HHHhcccccc-cH---HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-cCCC-CCCCCcc-hHHHH
Q 001793 176 IVLLEESEDI-QE---DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSM-SGDS-RPGHSHI-DYHEV 248 (1012)
Q Consensus 176 ~~vI~E~~~v-~~---~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~f~~~l-~~~~-~~~~~~~-~~h~l 248 (1012)
..++.-..++ |+ .++..++-++..++. +-++=|.-.+..-+....+.+-.++.+.+ .|=+ ....+.. ..-..
T Consensus 158 ~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 8888886653 33 333344444433211 22222222222222223333333333322 1111 1111111 22344
Q ss_pred HHHHHhhC----chhhhhhhhhhhccc---cCCChHHHHHHHHHHHHhhcCCC---------------------CChhh-
Q 001793 249 IYDVYRCS----PQILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPG---------------------SANNE- 299 (1012)
Q Consensus 249 i~el~~~~----P~lL~~Vip~Le~eL---~se~~~~R~~At~~lg~m~s~~~---------------------~~~~~- 299 (1012)
+-++.+.+ -+-+..++|.+.+.. ..+++++|....+.+|-.+--.. .|+.-
T Consensus 237 l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 44444432 223455677777777 78899999999998886554321 11100
Q ss_pred hcHHHHHHHHhc------------ccCCChhHHHHHHHHhHHHHhcCCCC--CChhHHHHHHHHHcCCchhHHHHHHHHH
Q 001793 300 QFHSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1012)
Q Consensus 300 ~~~~~~~~fL~R------------~~D~s~~VR~~~v~~~~~il~~~~~~--~~~~~i~~~l~~rL~D~DekVR~aaV~~ 365 (1012)
+.-+.=+.|+.- =.|.|=.||.+..++....+.++++. +--+.+-..+..|+.|-+|.|+..+..+
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 001122222222 23455679999999999999887642 1224555788899999999999999999
Q ss_pred HHHhhhhhcCCC---------------------CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001793 366 ICDVACHALNSI---------------------PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1012)
Q Consensus 366 i~~la~~~~~~v---------------------~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~ 412 (1012)
+-++-......+ +. -+.+.++.-+|+|+.+-|.-|+..|..+-+.+.
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp 467 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLP 467 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCc
Confidence 987654322211 11 235788999999999999999999999988864
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.15 E-value=0.018 Score=51.89 Aligned_cols=86 Identities=23% Similarity=0.245 Sum_probs=65.5
Q ss_pred hhhhhccc-cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhH
Q 001793 264 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1012)
Q Consensus 264 ip~Le~eL-~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1012)
||.|-..| .+++..+|..|+.++|++- .+.+-..++...+|.++.||.+.+...+.+ . ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i--~------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI--G------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC--H------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh--C------CHH
Confidence 45666677 7889999999999999431 235566666666999999999999999874 1 247
Q ss_pred HHHHHHHHcCCc-hhHHHHHHHHHHH
Q 001793 343 ILTALCDRLLDF-DENVRKQVVAVIC 367 (1012)
Q Consensus 343 i~~~l~~rL~D~-DekVR~aaV~~i~ 367 (1012)
.+..|.+.+.|+ ++.||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888888888775 5567999888764
No 25
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=5.3 Score=48.93 Aligned_cols=125 Identities=22% Similarity=0.304 Sum_probs=89.8
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHH
Q 001793 269 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 348 (1012)
Q Consensus 269 ~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~ 348 (1012)
--..|.+-.+|-...+++..+....+.-=-.-|.-+-...+.|.-|+.|.||++.|.+... +.-.|. ++.-++.+.+.
T Consensus 92 Rg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l~ 169 (892)
T KOG2025|consen 92 RGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLLK 169 (892)
T ss_pred hcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHHH
Confidence 3345789999999999999998743211113344455578999999999999999999876 332332 33446666555
Q ss_pred HH-cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001793 349 DR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1012)
Q Consensus 349 ~r-L~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1012)
.- -+||.+.||.+|.-.|. ++.+++-.+.||.||=+..+|+-+-..+
T Consensus 170 ~liqnDpS~EVRRaaLsnI~---------vdnsTlp~IveRarDV~~anRrlvY~r~ 217 (892)
T KOG2025|consen 170 DLIQNDPSDEVRRAALSNIS---------VDNSTLPCIVERARDVSGANRRLVYERC 217 (892)
T ss_pred HHHhcCCcHHHHHHHHHhhc---------cCcccchhHHHHhhhhhHHHHHHHHHHh
Confidence 44 48999999999665543 4556666778999999999999764443
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=2.5 Score=51.18 Aligned_cols=216 Identities=19% Similarity=0.193 Sum_probs=139.6
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHH--
Q 001793 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS-- 322 (1012)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~-- 322 (1012)
+.+++..+|+- ++|..++|.|.+.|.+++=.+|-.++=.+|-|--+=-.-|...-|.+.--++.-..||.|-||..
T Consensus 378 aLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITC 455 (885)
T KOG2023|consen 378 ALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITC 455 (885)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeee
Confidence 46666666653 67777999999999999999999999999977654212244455888888999999999999963
Q ss_pred --HHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCCCCH--HHHH---HHHHhhccCCh
Q 001793 323 --VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVK---LVAERLRDKSV 394 (1012)
Q Consensus 323 --~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~-~~~v~~--~~l~---~l~eR~rDKk~ 394 (1012)
.-.+++.++.-+++ .--..++.+|.+|++|..-+|--|||.++..+.... -+.||. .+|. .....-.-|+.
T Consensus 456 WTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 456 WTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred eeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce
Confidence 23555555554432 223578889999999999999999999999876643 445553 2222 22233445666
Q ss_pred hHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHHh--hhhccCCC-------chhHHHHhhhcCCCCCCCHHHHH
Q 001793 395 LVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFG-------SDTIESVLCGSLFPTGFSVKDRV 465 (1012)
Q Consensus 395 ~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~--~~y~~d~~-------~~~ve~vl~e~LlP~~~~~~~R~ 465 (1012)
.|==.||-+||.--.++..+.. -.+. -||--|=. ..-+.|++ ...|-..+-..++|+--++=+|.
T Consensus 535 lILYDAIgtlAdsvg~~Ln~~~----Yiqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc 608 (885)
T KOG2023|consen 535 LILYDAIGTLADSVGHALNKPA----YIQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRC 608 (885)
T ss_pred ehHHHHHHHHHHHHHHhcCcHH----HHHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHH
Confidence 6667788888876665543211 0000 01211111 11122322 02466677777888877777775
Q ss_pred HHHH
Q 001793 466 RHWV 469 (1012)
Q Consensus 466 ~~l~ 469 (1012)
-+++
T Consensus 609 ~~il 612 (885)
T KOG2023|consen 609 FRIL 612 (885)
T ss_pred HHHH
Confidence 5554
No 27
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.85 E-value=2 Score=52.89 Aligned_cols=405 Identities=14% Similarity=0.080 Sum_probs=207.3
Q ss_pred hhhhhhhccccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 001793 262 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1012)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~-~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~ 340 (1012)
+.+|.+-.+|.+.-...|..|++ +++.|--++ +... +|...++-..=.+.+.-.-+=.+....-..+|. .+
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~--~a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD--LA 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCch--HH
Confidence 45566666666665566766664 667676553 3444 455555554444566666666676666667775 34
Q ss_pred hHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 001793 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1012)
Q Consensus 341 ~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~ 420 (1012)
...++.+.+-.-|+++.+|.-|+...+ +-....+.+-...-+..-.+|+.+-||+.|..+++++|.....-.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~----- 156 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV----- 156 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc-----
Confidence 466788888899999999998776655 333344455566778888999999999999999999998632211
Q ss_pred chhhcccchHHHHhhhhccCCCc-----hhHHHHhhhcC--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 001793 421 NQNEFEWIPGKILRCLYDKDFGS-----DTIESVLCGSL--FPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 493 (1012)
Q Consensus 421 ~~~~~~wIP~~iL~~~y~~d~~~-----~~ve~vl~e~L--lP~~~~~~~R~~~l~~l~~~lD~~~~ka~~~il~~k~~l 493 (1012)
.-+.+++.+=..+.+.++.. ..+..+....- .+... ...+..+++......++=+ -..++.
T Consensus 157 ---~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ec~EW~---qi~IL~----- 224 (734)
T KOG1061|consen 157 ---EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALNECTEWG---QIFILD----- 224 (734)
T ss_pred ---cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHHHhhhhh---HHHHHH-----
Confidence 11333343333333222220 11111111110 11111 1334444444443333311 011111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCc--hhHHHHHHHHHhhccHHHHHHHHHH-------hc--cC
Q 001793 494 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP--AKAEENFLILDQLKDANVWKILMNL-------LD--SN 562 (1012)
Q Consensus 494 ~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~--~ka~~~l~kf~~l~D~r~~~ll~~~-------~~--~~ 562 (1012)
.+..+.-.++.+...-++.+-.+|. +.+.+ .-+...+..+.+..+...-.+++.+ ++ ++
T Consensus 225 ---------~l~~y~p~d~~ea~~i~~r~~p~Lq-h~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e 294 (734)
T KOG1061|consen 225 ---------CLAEYVPKDSREAEDICERLTPRLQ-HANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESE 294 (734)
T ss_pred ---------HHHhcCCCCchhHHHHHHHhhhhhc-cCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccch
Confidence 1111111111122211111111111 00110 0112222222222111111112222 11 12
Q ss_pred CCHHHHHHHHHHHHHHhc---CC-Cc----hH--HHHHHHHHhhhcccccHhHHHHHHHHHHhhccchhhhhHHHHHHHH
Q 001793 563 TSFDQAFTGRDDLLKILG---AK-HR----LY--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDIL 632 (1012)
Q Consensus 563 ~~~~~~~~a~~ellkkl~---~~-~~----~~--~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL 632 (1012)
..|-.++|+.--+.++-+ .+ .. .. -+++.....+-..+.|.+++..++..+......-+......+.+-+
T Consensus 295 ~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 295 IQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred hhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHh
Confidence 334444444333333211 00 00 00 1455555667777889999999988776554443334555666777
Q ss_pred HHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhccchHhhhhhccchHHHH-HHHHhhcCChHHHHHHHHHH
Q 001793 633 GILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLL-LERLCLEGSRRQAKYAVHAL 710 (1012)
Q Consensus 633 ~~iS~~~P~lf~~~~~~L~~~L~~~~~~~~~~~L~~L~~~~k~~~~~~~~~~~~~~~~-L~~la~~Gtp~~AK~Av~~L 710 (1012)
-.++...++. -++++.|.++++-.-+.++.++..++..+..+++..+. ..... ..++=.-+.|+ ||.|.--|
T Consensus 375 g~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~----~vv~~l~~~~~sl~epe-ak~amiWi 447 (734)
T KOG1061|consen 375 GRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYE----SVVAILCENLDSLQEPE-AKAALIWI 447 (734)
T ss_pred hhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchh----hhhhhhcccccccCChH-HHHHHHHH
Confidence 7777777777 77899999999965556777788888877765444321 12221 11222223454 89987733
No 28
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.79 E-value=1.1 Score=49.60 Aligned_cols=231 Identities=12% Similarity=0.202 Sum_probs=152.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccC
Q 001793 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1012)
Q Consensus 63 ~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl 142 (1012)
..|.+.|..+|+-.--||++++-=..|+ ..+..|..-++.||.+-| .|... +...+.-....+-|..+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L~~~ev~~L~~F~~~rl---~D~~~--------~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPD-FLSRQEVQVLLDFFCSRL---DDHAC--------VQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHh-hccHHHHHHHHHHHHHHh---ccHhh--------HHHHHHHHHHHHhCcCC
Confidence 4678899999999999999998765444 478899999999999865 44222 22233333333334444
Q ss_pred CccHHHHHHHHHHHHhhc-CCChhcHHHHHHHHHHHHhccc----ccccHHHHHHHHHhhcCCCCh----HHHHHHHHHH
Q 001793 143 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEES----EDIQEDLLVILLSALGRNKND----TARRLAMNVI 213 (1012)
Q Consensus 143 ~~~~li~~lF~~~~~~v~-~~~~~~v~~~m~~Il~~vI~E~----~~v~~~~ld~il~~~~~~~~~----~a~~la~~v~ 213 (1012)
+ .+....+.+.+|+-+. ..++.+.+...-.|+..+++.. ..+..+.+.-+++.+..+|.+ -++++...++
T Consensus 74 ~-~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 S-PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred C-hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3 2235555555554333 3467777777777777777663 346677788777766554443 6888888888
Q ss_pred HHhhhhhHHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh---CchhhhhhhhhhhccccCCChHHHHHHHH
Q 001793 214 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1012)
Q Consensus 214 ~~~~~~l~~~i~~~f~~~l~------~~~~~~~~~~~~h~li~el~~~---~P~lL~~Vip~Le~eL~se~~~~R~~At~ 284 (1012)
..-. +.+....+|.-+.. ........++..-+|-..|.++ .|..-.-++|.|-++|.|+...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7765 47777777764321 1110011234444555555554 67776779999999999999999999999
Q ss_pred HHHHhhcCCCCC-hhhhcHHHHHHH
Q 001793 285 LVGDLFAVPGSA-NNEQFHSVFSEF 308 (1012)
Q Consensus 285 ~lg~m~s~~~~~-~~~~~~~~~~~f 308 (1012)
++..++..-|.. +.....++|++.
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999876643 344457778754
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.30 E-value=3.3 Score=57.21 Aligned_cols=373 Identities=15% Similarity=0.086 Sum_probs=179.0
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 001793 315 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 387 (1012)
Q Consensus 315 ~s~~VR~~~v~~~~~il~~~~~~~---~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~----~v~~~~l~~l~e 387 (1012)
.+.+++...+.+...+...+.+.- .....++.|.+.|...++.+|..++.+++-++..+-+ .+....+..+.+
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 447899999988877554333210 0012457888888889999999999999877653211 122334556778
Q ss_pred hhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHHhhhhccCCCch-hHHHHhhhcCCCCCCCHHHHHH
Q 001793 388 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDRVR 466 (1012)
Q Consensus 388 R~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~~~-~ve~vl~e~LlP~~~~~~~R~~ 466 (1012)
.++..+..+|++|...|+++=... .. .......-+-||. +++.+-..+.+.. ..=..++.-+-. ...+...
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~-~q---ir~iV~~aGAIpp-LV~LL~sgd~~~q~~Aa~AL~nLi~~---~d~~~I~ 567 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS-ED---IRACVESAGAVPA-LLWLLKNGGPKGQEIAAKTLTKLVRT---ADAATIS 567 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc-HH---HHHHHHHCCCHHH-HHHHHhCCCHHHHHHHHHHHHHHHhc---cchhHHH
Confidence 888889999999999999875420 00 0011122355664 5555433332210 111111111100 1112223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh
Q 001793 467 HWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL 546 (1012)
Q Consensus 467 ~l~~l~~~lD~~~~ka~~~il~~k~~l~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l 546 (1012)
.++.++.+-|++...... ..+-..+... +..+.+... ......+..+.+
T Consensus 568 ~Lv~LLlsdd~~~~~~aL----------~vLgnIlsl~------~~~d~~~~g--------------~~~~ggL~~Lv~- 616 (2102)
T PLN03200 568 QLTALLLGDLPESKVHVL----------DVLGHVLSVA------SLEDLVREG--------------SAANDALRTLIQ- 616 (2102)
T ss_pred HHHHHhcCCChhHHHHHH----------HHHHHHHhhc------chhHHHHHh--------------hhccccHHHHHH-
Confidence 333443332221111000 0111111110 000111000 000112222222
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhcccccHhHHHHHHHHHHhhccchhhhhHH
Q 001793 547 KDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQ 626 (1012)
Q Consensus 547 ~D~r~~~ll~~~~~~~~~~~~~~~a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~ 626 (1012)
+...++ -..-..|. ..+-.+-..+ .+.. . .++....|+-++..+... +.+...+
T Consensus 617 -----------LL~sgs-~~ikk~Aa-~iLsnL~a~~--~d~~------~--avv~agaIpPLV~LLss~---~~~v~ke 670 (2102)
T PLN03200 617 -----------LLSSSK-EETQEKAA-SVLADIFSSR--QDLC------E--SLATDEIINPCIKLLTNN---TEAVATQ 670 (2102)
T ss_pred -----------HHcCCC-HHHHHHHH-HHHHHHhcCC--hHHH------H--HHHHcCCHHHHHHHHhcC---ChHHHHH
Confidence 111111 01111111 1111211111 0111 1 134445567777655432 1111223
Q ss_pred HHHHHHHHHHhhCCc-----CccccHHHHHHHHhhccccchHhHHHHHHHhccchHhhhhhccchHHHHHHHHhhcCChH
Q 001793 627 SCMDILGILARFSPL-----LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRR 701 (1012)
Q Consensus 627 ~a~~LL~~iS~~~P~-----lf~~~~~~L~~~L~~~~~~~~~~~L~~L~~~~k~~~~~~~~~~~~~~~~L~~la~~Gtp~ 701 (1012)
.|..|.+..+...+. +=.+.+..|+++|...+..+++.++.+|+++.+.-...-.-.....++.|.++-.+|+|+
T Consensus 671 AA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~ 750 (2102)
T PLN03200 671 SARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLE 750 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChH
Confidence 343443333222222 113457899999999888888999999998875422111112345689999999999999
Q ss_pred HHHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 001793 702 QAKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 752 (1012)
Q Consensus 702 ~AK~Av~~L~~~~~~~~~~~-~------~~l~~~l~~~l~~~~--~~~~--~L~sL~~ia~~ 752 (1012)
.=++|+.+|..+........ + .-.+..+++.|+..+ +..+ .|..|+-+++.
T Consensus 751 ~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 751 GKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 99999999976664332110 1 112445555554222 3333 56666666664
No 30
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.19 E-value=1.9 Score=52.45 Aligned_cols=116 Identities=23% Similarity=0.190 Sum_probs=89.9
Q ss_pred hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhc-HHHHHHHHhccc-----CCChhHHHHHHHHhHHHHhcCCC
Q 001793 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLTDPS 336 (1012)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~-~~~~~~fL~R~~-----D~s~~VR~~~v~~~~~il~~~~~ 336 (1012)
=--.++.-|.++-+.+|..||..+.+.++. |+.-- |.+-...|++.. |.+.+||+..++..+.++.+-.+
T Consensus 221 Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s 296 (1005)
T KOG1949|consen 221 QFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS 296 (1005)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc
Confidence 334566667888999999999999999984 55544 455667787764 67889999999999998886555
Q ss_pred CCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh----hhcCCCCHHHH
Q 001793 337 RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC----HALNSIPVETV 382 (1012)
Q Consensus 337 ~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~----~~~~~v~~~~l 382 (1012)
+..-..++++|.--++|.-|+||.|+|..+..+-- .-...+|-+.+
T Consensus 297 h~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~ 346 (1005)
T KOG1949|consen 297 HPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHI 346 (1005)
T ss_pred hhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHH
Confidence 55567889999999999999999999999876632 23445666654
No 31
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.08 E-value=0.061 Score=50.26 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001793 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1012)
Q Consensus 340 ~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v---~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1012)
.++|++.+..++.|+|.+||..||+++..++...-..+ =.+++..+..++.|-...||.-| ..|-++
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 35788888899999999999999999998886443333 23667888999999999999877 555444
No 32
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.86 E-value=6.3 Score=48.39 Aligned_cols=298 Identities=15% Similarity=0.221 Sum_probs=156.8
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccC
Q 001793 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1012)
Q Consensus 63 ~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl 142 (1012)
..|+....-||..+|.|++-+.-. -.||.-+++..||+.+-+-.+.=. + +.....|..+.. . |-+
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy---l--ipl- 624 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY---L--IPL- 624 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh---c--ccc-
Confidence 344555566999999999988665 358999999999998865433211 1 112223332222 1 111
Q ss_pred CccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhh
Q 001793 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRN----KNDTARRLAMNVIEQCAG 218 (1012)
Q Consensus 143 ~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~~----~~~~a~~la~~v~~~~~~ 218 (1012)
+..-+...|. ..+|.-+|-|..+-..+.-+++|.-+.+. ..+++|.- .|
T Consensus 625 -----md~eya~yyT--------------revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r--------~d 677 (1172)
T KOG0213|consen 625 -----MDAEYASYYT--------------REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR--------FD 677 (1172)
T ss_pred -----ccHHHHHHhH--------------HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh--------hh
Confidence 1111222221 34555666666555555444555444321 11233321 12
Q ss_pred hhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh--CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCC
Q 001793 219 KLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1012)
Q Consensus 219 ~l~~~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~--~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~ 296 (1012)
.+...+..|-+.=+.+|.. .-...-+.-.+|..- +-..+. -+-.+|.+|.++.|..+.+++.++++.-|..
T Consensus 678 ilp~ff~~fw~rrmA~drr---~ykqlv~ttv~ia~KvG~~~~v~----R~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRR---NYKQLVDTTVEIAAKVGSDPIVS----RVVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hhHHHHhhhhhhhhhcccc---chhhHHHHHHHHHHHhCchHHHH----HHhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 2333333333322222210 001112222222221 222233 3446788899999999999999999876522
Q ss_pred -----------------h------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHh--
Q 001793 297 -----------------N------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-- 332 (1012)
Q Consensus 297 -----------------~------------------------~~~~-~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~-- 332 (1012)
| ++.| |.+-..-|.|.|.+++.||..-.+.++.+..
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 1 1222 6666777789999999999988777665431
Q ss_pred cCC-----------------CC--------------------------CChhHHHHHHHHHcCCchhHHHHHHHHHHHHh
Q 001793 333 TDP-----------------SR--------------------------ADAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1012)
Q Consensus 333 ~~~-----------------~~--------------------------~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~l 369 (1012)
... .. .-+++|+..|.--|..-++||-...|.-++.+
T Consensus 831 ktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 831 KTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred HhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 110 00 01123333333344555666766666666666
Q ss_pred hhhhcCCCCHHH-HH---HHHHhhccCChhHHHHHHHHHHHHHH
Q 001793 370 ACHALNSIPVET-VK---LVAERLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 370 a~~~~~~v~~~~-l~---~l~eR~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
+....+.||..- ++ .|.|-++--|.++|+.|.+++|-+=+
T Consensus 911 adrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred HhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 666666666532 12 33344555556677777766665544
No 33
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=94.63 E-value=0.27 Score=52.76 Aligned_cols=102 Identities=19% Similarity=0.108 Sum_probs=66.8
Q ss_pred hhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhcccCCChhHHHHHHHHhHHHHhcCCC--C--C
Q 001793 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS--R--A 338 (1012)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~-~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~--~--~ 338 (1012)
+|.|=..+...+..+|..|.+++-.|+..-+ -++.+ ......-.++++|.||..++++...++...+. . .
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~ 170 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ 170 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence 3444444555677788888888888886432 12444 45555567888999999999998888887771 1 1
Q ss_pred ---ChhHHHHHHHHHcCCchhHHHHHHHHHHHHhh
Q 001793 339 ---DAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1012)
Q Consensus 339 ---~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la 370 (1012)
....+.+.+.+.+.|++..||.++-+++..+.
T Consensus 171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 12468899999999999999999988888664
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.62 E-value=0.052 Score=51.18 Aligned_cols=105 Identities=12% Similarity=0.064 Sum_probs=55.5
Q ss_pred hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhh-hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 001793 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 339 (1012)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~-~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-- 339 (1012)
++|.|-.-|...+...|..|..+++.|.......... .....+..+++=.+|.++.||..++....++..+.+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6677777778888999999999999988762100000 0113444444444455555555555555554433221000
Q ss_pred -hhHHHHHHHHHcCCchhHHHHHHHHHHH
Q 001793 340 -APQILTALCDRLLDFDENVRKQVVAVIC 367 (1012)
Q Consensus 340 -~~~i~~~l~~rL~D~DekVR~aaV~~i~ 367 (1012)
...+++.+.+.+.|.|.+||..++.+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0123344444455555555555444444
No 35
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.60 E-value=9.9 Score=45.69 Aligned_cols=250 Identities=17% Similarity=0.154 Sum_probs=142.8
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHH
Q 001793 269 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 348 (1012)
Q Consensus 269 ~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~ 348 (1012)
--+.|.+-.+|....+.++.+.-.-+.-=-.-|-.+--...+|.-|..+.||.+.|.+....= .-+.++...+.+.|.
T Consensus 98 Rg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l~ 175 (885)
T COG5218 98 RGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLLK 175 (885)
T ss_pred hcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHHH
Confidence 345578999999999999987654331001234555667889999999999999999876532 222334445555444
Q ss_pred HH-cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhccc
Q 001793 349 DR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1012)
Q Consensus 349 ~r-L~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~w 427 (1012)
.- -+||.+.||.+|.--+ .++..+.-.+.||.||=....|+- +|.+..+++++ .++..
T Consensus 176 ~~vqnDPS~EVRr~allni---------~vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~ls 234 (885)
T COG5218 176 DIVQNDPSDEVRRLALLNI---------SVDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLS 234 (885)
T ss_pred HHHhcCcHHHHHHHHHHHe---------eeCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhcc
Confidence 33 4899999999854443 245556667789999998888874 56665555422 23444
Q ss_pred chHHHHhhhh-ccC--CC--chhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001793 428 IPGKILRCLY-DKD--FG--SDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLS 502 (1012)
Q Consensus 428 IP~~iL~~~y-~~d--~~--~~~ve~vl~e~LlP~~~~~~~R~~~l~~l~~~lD~~~~ka~~~il~~k~~l~~~~~~~l~ 502 (1012)
|--+|+-.=+ -+| +. ...+|.+....+.|.+.+ ++.+...+|-...+ -+-.+++.+++
T Consensus 235 i~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~-------lveLle~lDvSr~s----------v~v~aik~~F~ 297 (885)
T COG5218 235 IDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLR-------LVELLEFLDVSRRS----------VLVAAIKGVFE 297 (885)
T ss_pred ccceehhhhhcchhhhhhHHHHHHHHHHHHhccccccc-------HHHHHHHHhhhhHH----------HHHHHHHHHHh
Confidence 4444442111 222 11 236777777777776633 33333333432111 12222333332
Q ss_pred HHhhhc----------CCCcHH---HHH-----HHHHHHHHHhhhcCCchhHHHHHHHHHhhccHHHHHHHHHH
Q 001793 503 LRQMHQ----------DGDAPE---IQK-----KILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNL 558 (1012)
Q Consensus 503 ~~~~~~----------~~~~~~---~~~-----kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l~D~r~~~ll~~~ 558 (1012)
.+-..- .+-..+ ..+ =+++-|.-+-.-||+..+-.+.+..+..+.++..|.-+-++
T Consensus 298 ~R~D~ls~~eFPe~~w~d~T~E~tfL~rt~~lyCldnNitell~~fPe~~~L~~~~~hyvslry~sSYnt~cfi 371 (885)
T COG5218 298 KRPDVLSEKEFPEYLWSDPTEENTFLSRTELLYCLDNNITELLGRFPESLALPDLESHYVSLRYRSSYNTLCFI 371 (885)
T ss_pred hccccchhhhcHHHHhhCchHHHHHHHHHHHHHHHhccHHHHHhhchhhhcchHHHhhheeeeeccccchhHHH
Confidence 211100 000000 000 11112334445599999999999988888888755554444
No 36
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.59 E-value=18 Score=45.63 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=100.6
Q ss_pred ccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHH
Q 001793 271 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1012)
Q Consensus 271 L~se~~~~R~~At~-~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~ 349 (1012)
|.+.+...|+.|.+ ++..|..+. ++..=+|++-+.|..| +++++.-+=-+...+-..+|. +.-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~tr----d~ElKrL~ylYl~~yak~~P~--~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVATR----DVELKRLLYLYLERYAKLKPE--LALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHh
Confidence 67778888888775 567777754 4777888888888843 567887777776666667773 44466799999
Q ss_pred HcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 350 rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
-+.|+++.+|..|+...+.+-. ..+-+-.+..+.+-+.|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 9999999999998888774332 234455678899999999999999999999999974
No 37
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.49 E-value=0.44 Score=53.76 Aligned_cols=98 Identities=18% Similarity=0.243 Sum_probs=76.7
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-----------C
Q 001793 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------A 338 (1012)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-----------~ 338 (1012)
-+++++..+|..|++.+| +++--+-+++.+|=.++..-+.+ | +++||+..++.+-+++..|+.. .
T Consensus 35 ~v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~ 110 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESV 110 (298)
T ss_pred HhcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence 355789999999999999 55544557787776666555533 5 9999999999999999988521 1
Q ss_pred ChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001793 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1012)
Q Consensus 339 ~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1012)
....+.+.+.+-+.+.+++||..||+++|.+-.
T Consensus 111 ~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 111 DSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 234688888888988899999999999997654
No 38
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=18 Score=45.13 Aligned_cols=131 Identities=15% Similarity=0.195 Sum_probs=92.6
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHH
Q 001793 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1012)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~ 349 (1012)
-|.+.....-+.|.+-+=-|++. |-+.. .+|-+-.+-..-++++|+..+-=+.-+.-..+|+... -=++.+++
T Consensus 43 lLdSnkd~~KleAmKRIia~iA~-G~dvS----~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk 115 (968)
T KOG1060|consen 43 LLDSNKDSLKLEAMKRIIALIAK-GKDVS----LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQK 115 (968)
T ss_pred HHhccccHHHHHHHHHHHHHHhc-CCcHH----HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHh
Confidence 35677777778887765555554 33433 3444455556667788877665555554556675332 23689999
Q ss_pred HcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 350 rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
-|.|+..-+|..|..+..++-. ..|-+=+|.++.+-.+|-.+-||+.|...+-++|+.
T Consensus 116 ~L~DpN~LiRasALRvlSsIRv---p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRV---PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 9999999999998888774332 223333577899999999999999999999999996
No 39
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.38 E-value=0.41 Score=49.69 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=66.6
Q ss_pred HHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHh
Q 001793 248 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHV 327 (1012)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~ 327 (1012)
.+-.|..-.|+++-+.+|.+..-|+.+++.+|..|...+.+++.. ++.+-.+.++..++.-..|.++.||.....+.
T Consensus 11 ~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~ 87 (178)
T PF12717_consen 11 ALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSFF 87 (178)
T ss_pred HHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHHH
Confidence 344555667888888888888888888888888888888888875 46677777888888888888888888888888
Q ss_pred HHHHhc
Q 001793 328 KSCLLT 333 (1012)
Q Consensus 328 ~~il~~ 333 (1012)
..+...
T Consensus 88 ~e~~~~ 93 (178)
T PF12717_consen 88 SELLKK 93 (178)
T ss_pred HHHHHh
Confidence 777765
No 40
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=7.8 Score=47.39 Aligned_cols=229 Identities=16% Similarity=0.157 Sum_probs=143.6
Q ss_pred hhhhccccCCChHHHHHHHHHHHHhhcCCCCChh-----hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc----CC
Q 001793 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-----EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 335 (1012)
Q Consensus 265 p~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~-----~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~----~~ 335 (1012)
|-|.--|++.|-.+|..|..++-+.|--.|.+.. +--..-|....+=..|--|.||...++..-.+... -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 6678889999999999999999999986665542 11222344455566899999999999887765532 25
Q ss_pred CCCChhHHHHHHH-HHcCCchhHHHHHHHHHHHHhhhhhcCCCCH-HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 001793 336 SRADAPQILTALC-DRLLDFDENVRKQVVAVICDVACHALNSIPV-ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1012)
Q Consensus 336 ~~~~~~~i~~~l~-~rL~D~DekVR~aaV~~i~~la~~~~~~v~~-~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~ 413 (1012)
.. ...++++.+. +--.|+--.||.++++.+-.++.....+--- -.|..|..-+-|+.-+||..+..-|.++=++-.-
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 42 2345554443 3458999999999999998777655443322 3467888889999999999999999998776321
Q ss_pred hccCCCcchhhcccchHHHHhhhhccCCCc--hhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 001793 414 RNFNGSINQNEFEWIPGKILRCLYDKDFGS--DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQ-- 489 (1012)
Q Consensus 414 ~~~~~~~~~~~~~wIP~~iL~~~y~~d~~~--~~ve~vl~e~LlP~~~~~~~R~~~l~~l~~~lD~~~~ka~~~il~~-- 489 (1012)
+-+.-||--.+-.--..|-+. +.+-+.++...+|..-+.+..-.|-.++. +.+..+-..|.+++.-
T Consensus 336 ---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee~~c~Rc~tlv-~~n~~A~~rf~~~l~~~~ 405 (1005)
T KOG1949|consen 336 ---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEEVWCERCVTLV-QMNHAAARRFYQYLHEHT 405 (1005)
T ss_pred ---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH-ccCHHHHHHHHHHhcccc
Confidence 122334433332222334221 23444556677888766554444433333 3344444445444422
Q ss_pred ---HHHHHHHHHHHHHHH
Q 001793 490 ---KQRLQQEMQRYLSLR 504 (1012)
Q Consensus 490 ---k~~l~~~~~~~l~~~ 504 (1012)
-+++...++-|+..|
T Consensus 406 ~~~~~~~~hlI~~fln~~ 423 (1005)
T KOG1949|consen 406 ATNIAKLIHLIRHFLNAC 423 (1005)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 233444455555543
No 41
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.18 E-value=0.07 Score=38.78 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.5
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001793 343 ILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1012)
Q Consensus 343 i~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1012)
|++.+.+.+.|++++||.+|+.++++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45677788889999999999988887654
No 42
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.00 E-value=35 Score=47.76 Aligned_cols=111 Identities=23% Similarity=0.229 Sum_probs=67.7
Q ss_pred cHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhCC--cCc------cccHHHHHHHHhhccccc--hHhHHHHHHH
Q 001793 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSP--LLL------GGTEEELVNLLKEENEII--KEGILHVLAK 671 (1012)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P--~lf------~~~~~~L~~~L~~~~~~~--~~~~L~~L~~ 671 (1012)
+-..|+.|++.+... +. .....|-..|..+.+.+| ++| .+.+..|+++|...|... +..+|.+|+.
T Consensus 733 ~~~~I~~Lv~lLr~G-~~---~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~ 808 (2102)
T PLN03200 733 AEDIILPLTRVLREG-TL---EGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALAL 808 (2102)
T ss_pred hcCcHHHHHHHHHhC-Ch---HHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 445678888866532 12 223445567777888887 223 445789999998765433 3457888875
Q ss_pred hccc-----h----HhhhhhccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 001793 672 AGGT-----I----REQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717 (1012)
Q Consensus 672 ~~k~-----~----~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~ 717 (1012)
.++. . .--+.+..+.+.+..+-+ -.|.|.-.--|+.+|..++++.
T Consensus 809 l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 809 LARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccC
Confidence 5432 0 001222223344433445 6799988889999999888764
No 43
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=3.1 Score=51.51 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcc-----c--ccccHHHHHH-HHH---hhcCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCC
Q 001793 167 VLSSMQTIMIVLLEE-----S--EDIQEDLLVI-LLS---ALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD 235 (1012)
Q Consensus 167 v~~~m~~Il~~vI~E-----~--~~v~~~~ld~-il~---~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~~ 235 (1012)
+......||..+++- . ..||.+.|.+ ||. -++++.. ..+|.|..-+.|-+++.=.
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~------------daSd~M~DiLaqvatntds-- 285 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA------------DASDLMNDILAQVATNTDS-- 285 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc------------cHHHHHHHHHHHHHhcccc--
Confidence 444455556655543 1 2478887775 443 3355432 2345566666666654211
Q ss_pred CCCCCCcc-hHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCC------------------CC
Q 001793 236 SRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG------------------SA 296 (1012)
Q Consensus 236 ~~~~~~~~-~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~------------------~~ 296 (1012)
..+.+. -.||-+..|.-+- .+..+|.+|+..+|+-++.++ .+
T Consensus 286 --skN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~ 346 (866)
T KOG1062|consen 286 --SKNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT 346 (866)
T ss_pred --cccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH
Confidence 111111 1355555555442 345666777777777666653 34
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001793 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1012)
Q Consensus 297 ~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1012)
.+++|+.+--+- ..|.+++||....|..-.++..+. ...+++.|.+-|.-.|+.+|...+..|+.++.
T Consensus 347 avqrHr~tIleC---L~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 347 AVQRHRSTILEC---LKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 678888876554 579999999999999877665433 45677777777777799999998888887764
No 44
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.67 E-value=19 Score=42.60 Aligned_cols=299 Identities=16% Similarity=0.205 Sum_probs=165.6
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCCch--HHHH-HHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhh-hhhhccCC-
Q 001793 69 DKDVKLLVATCICEITRITAPEAPYSDD--VLKD-IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRS-CVVMLDLE- 143 (1012)
Q Consensus 69 d~~Vr~~~acCl~dilRi~APdaPy~~~--~lkd-If~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks-~vl~~dl~- 143 (1012)
+.+.-..+.-||..++.-..-+.++.+. ..++ +...+++..-.-.+.++. ....+|+.++.+=. ++-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 3444444555566665555444434332 2222 444444433222222222 44667777776533 33335544
Q ss_pred ccHHHHHHHHHHHHh-----hcC------CChhcHHHHHHHHHHHHhccccccc--HHHHHHHHHhhcCCCCh----HHH
Q 001793 144 CDELVNEMYSTFFAV-----ASD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TAR 206 (1012)
Q Consensus 144 ~~~li~~lF~~~~~~-----v~~------~~~~~v~~~m~~Il~~vI~E~~~v~--~~~ld~il~~~~~~~~~----~a~ 206 (1012)
.++++.++|+.|+.. ... ..+.........++..+=-+. .+| .++++-++.-....... ++.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 478899999999811 000 123333333334433322221 233 23444444433222222 556
Q ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHhhcCCCCCCCCcchHHH--------HHHHHHhhCchhhhhhhhhhhccccCCCh
Q 001793 207 RLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQL 276 (1012)
Q Consensus 207 ~la~~v~~~~--~~~l~~~i~~~f~~~l~~~~~~~~~~~~~h~--------li~el~~~~P~lL~~Vip~Le~eL~se~~ 276 (1012)
++..-++|++ .+.+...+...+... .............+ ++.+-+..+.+++...+..| .+ .
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~--~ 283 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS--P 283 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC--h
Confidence 7777788884 445666666666554 11111112222222 22222233333344433333 22 7
Q ss_pred HHHHHHHHHHHHhhcC-CCC----Chh--------hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---CCh
Q 001793 277 DTRLKAVGLVGDLFAV-PGS----ANN--------EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADA 340 (1012)
Q Consensus 277 ~~R~~At~~lg~m~s~-~~~----~~~--------~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~---~~~ 340 (1012)
++...|.+.+|-++++ ++. +.+ +-|-.+....+..+.+.+..+|..++.+..+++.+-|.. .+.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7889999999999998 321 111 234555666788888888889999999999999877752 345
Q ss_pred hHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH
Q 001793 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1012)
Q Consensus 341 ~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~ 379 (1012)
+++++-|.+.|.=+|..||.++..++..+.......+.+
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 678888888888788889999999998777766444444
No 45
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.61 E-value=0.048 Score=44.92 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=34.9
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChhHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001793 317 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1012)
Q Consensus 317 ~~VR~~~v~~~~~il~~~~~--~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1012)
|.||...+...+.+....+. .....++++.|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46787777777764333322 11234777888888888888888888877764
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.43 E-value=0.47 Score=57.53 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=113.3
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC
Q 001793 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1012)
Q Consensus 260 L~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~ 338 (1012)
+.+..|.|..-|.++++.+|..|.+.+|++...++.. -.-..++++..-+.-..|.+.+|-...++....+..+.+.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~-- 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG-- 152 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh--
Confidence 5567778888899999999999999999999876421 1235577899999999999999999999999887654332
Q ss_pred ChhHH-----HHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC---C-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001793 339 DAPQI-----LTALCDRLLDFDENVRKQVVAVICDVACHALNS---I-PVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 339 ~~~~i-----~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~---v-~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
...+ ...|..-+.-+++.||..+...++.++..+... + ...++..+..-+.+.-.-||..|++.|+.+=.
T Consensus 153 -~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~ 231 (503)
T PF10508_consen 153 -LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE 231 (503)
T ss_pred -HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence 2234 566666665569999999999999887654332 2 23467777788889889999999999988754
No 47
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.21 E-value=2.3 Score=54.57 Aligned_cols=151 Identities=15% Similarity=0.187 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhh---Cc--hhhhhhhhhhhccc----cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccC
Q 001793 244 DYHEVIYDVYRC---SP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTD 314 (1012)
Q Consensus 244 ~~h~li~el~~~---~P--~lL~~Vip~Le~eL----~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D 314 (1012)
+.+++|..+.+- .| .+|....|.++.-- ...|+.++..||-.+|+|.-- ++.|-..|-+++-.-+.+ -
T Consensus 896 d~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimek--s 972 (1251)
T KOG0414|consen 896 DLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEK--S 972 (1251)
T ss_pred hHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhc--C
Confidence 456666554432 33 56666777776654 345799999999999999865 345655554444444443 3
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 001793 315 RIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1012)
Q Consensus 315 ~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~ 394 (1012)
.+|-||.-+|=.++++...-|.. .....++|-.||+|.+..||..|+.++.-+...+.-.|-+- +..++--+-|-..
T Consensus 973 p~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGq-l~eMA~cl~D~~~ 1049 (1251)
T KOG0414|consen 973 PSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQ-LSEMALCLEDPNA 1049 (1251)
T ss_pred CCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhccc-HHHHHHHhcCCcH
Confidence 57889999999999988877753 44788999999999999999999999987766554333322 4456777788877
Q ss_pred hHHHHH
Q 001793 395 LVKRYT 400 (1012)
Q Consensus 395 ~VR~~A 400 (1012)
.||.-|
T Consensus 1050 ~IsdlA 1055 (1251)
T KOG0414|consen 1050 EISDLA 1055 (1251)
T ss_pred HHHHHH
Confidence 765544
No 48
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.06 E-value=38 Score=44.21 Aligned_cols=457 Identities=16% Similarity=0.138 Sum_probs=208.7
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCC--CCC---hhhhcHH-HHHHHHhcccCCCh
Q 001793 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSA---NNEQFHS-VFSEFLKRLTDRIV 317 (1012)
Q Consensus 244 ~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~--~~~---~~~~~~~-~~~~fL~R~~D~s~ 317 (1012)
..-..+.++-..+|.+...=+..+-.-|.++.-..|-..++..|.+-..- +.+ ..++-++ .-..+..|..|+++
T Consensus 294 ~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa 373 (1251)
T KOG0414|consen 294 IVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSA 373 (1251)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccH
Confidence 35678899999999999999999988999999999999999999987642 111 1112222 33344455555555
Q ss_pred hHHHHHHHHhHHHHhcC--CCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 001793 318 AVRMSVLEHVKSCLLTD--PSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1012)
Q Consensus 318 ~VR~~~v~~~~~il~~~--~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~ 395 (1012)
-||.+..+-...|-.-| |-+ ...+++.....||.|-.--||..|++-+..+-. ++|-
T Consensus 374 ~vRskVLqv~~~l~~~~s~p~~-~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~--------------------~~Pf 432 (1251)
T KOG0414|consen 374 YVRSKVLQVFRRLFQQHSIPLG-SRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD--------------------RHPF 432 (1251)
T ss_pred HHHHHHHHHHHHHHHccCCCcc-HHHHHHHHHhcccccccHHHHHHHHHHHHHHHh--------------------cCCc
Confidence 55555555444433222 111 123444444444444444444444443322111 1111
Q ss_pred HHHHHHHHHHHHHHHhhhhccC--CCcchhhcccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHH-HHH-HHHHH
Q 001793 396 VKRYTMERLADIFRGCCLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKD-RVR-HWVRI 471 (1012)
Q Consensus 396 VR~~Ai~~L~~lY~~~~~~~~~--~~~~~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~-R~~-~l~~l 471 (1012)
-++....-+...|..+....++ ++.....=..+++--.. -+..-.. .++..=...--|....... -.. .+..-
T Consensus 433 s~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~q~~ss~~~~~e~~~~~~~ 509 (1251)
T KOG0414|consen 433 SSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKNQLESSDNKQEEHCLLENE 509 (1251)
T ss_pred hhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhccccccccccchhhhhhhhh
Confidence 1111112222223322221110 00000000001110000 0000000 0000000001111000000 000 11111
Q ss_pred HhcCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHhh
Q 001793 472 FSGFDRIE----MKALEKILEQKQRLQQEMQRYLSLRQ-MHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL 546 (1012)
Q Consensus 472 ~~~lD~~~----~ka~~~il~~k~~l~~~~~~~l~~~~-~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~l 546 (1012)
....+..+ .++..+++...-+....|.+-+...- ..-++...+++.-+... ..+..| +-.-|+.++++.-.+
T Consensus 510 ~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~~F-~I~gae~~irkMl~L 586 (1251)
T KOG0414|consen 510 VESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCKQF-GIDGAEFGIRKMLPL 586 (1251)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHh-CCCcHHHHHHHHhhh
Confidence 11111111 12223333333333333333332211 11123334555554432 223333 333455666665553
Q ss_pred ---ccHHHHHHHHHH-------hccCCCHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHhhhcccccHhHHHHHHH
Q 001793 547 ---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLSMKCSYLLFNKEHVKEILL 611 (1012)
Q Consensus 547 ---~D~r~~~ll~~~-------~~~~~~~~~~~~a~~ellkkl~~-----~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~ 611 (1012)
+|..++.++..| .+++..-.+.....+-+++.+-+ .+++-+.+..|.. ---+++.-|..|.+
T Consensus 587 VWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~---~~~Id~~Vi~~Lw~ 663 (1251)
T KOG0414|consen 587 VWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVA---RGYIDAAVINKLWE 663 (1251)
T ss_pred hhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHh---CCCccHHHHHHHHH
Confidence 566655555444 33444434432223344444322 2233333443433 44688888999998
Q ss_pred HHHhhccchhhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhc-cchH----hh--h-hhc
Q 001793 612 EVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAG-GTIR----EQ--L-AAT 683 (1012)
Q Consensus 612 ~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~L~~~~~~~~~~~L~~L~~~~-k~~~----~~--~-~~~ 683 (1012)
.....+.+......--++.+|-++|...|++-..+.+.|+++=- +.+.....+|...+.++ .... .. + .+.
T Consensus 664 ~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~igl-g~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~ 742 (1251)
T KOG0414|consen 664 IFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGL-GEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQ 742 (1251)
T ss_pred HHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhcc-CcHHHHHHHHHHHHHhhcccccchhhccccccCch
Confidence 77433322221112236789999999999999999887766532 23555666777777554 1111 01 1 122
Q ss_pred cchHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 001793 684 SSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1012)
Q Consensus 684 ~~~~~~~L~~la~~Gtp-------~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~ 732 (1012)
...+...|+.+-..|-+ .-|..|+.+|..+....+. ....++..+.+.
T Consensus 743 ~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~-la~~li~~~~~~ 797 (1251)
T KOG0414|consen 743 EEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEV-LATQLIRKLLKQ 797 (1251)
T ss_pred HHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHH
Confidence 34577888887776432 4567788888777665432 223344444443
No 49
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.98 E-value=0.2 Score=63.81 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=79.1
Q ss_pred HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH-HHH
Q 001793 307 EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV-KLV 385 (1012)
Q Consensus 307 ~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l-~~l 385 (1012)
.|+-|+.|++|.||+.|++..+..+.+-|+.-...--++++.=.|.|-...||+..++++..+-...-..-..+++ .-.
T Consensus 291 VFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 291 VFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 6889999999999999999999888887864333467899999999999999999999998876653221122221 222
Q ss_pred HHh-----hccCChhHHHHHHHHHHHHHHH
Q 001793 386 AER-----LRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 386 ~eR-----~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
.+| .||-..+||..++..+-..+..
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~~~~ 400 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLLSSS 400 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHhcc
Confidence 222 5888899999999888777654
No 50
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.66 E-value=0.95 Score=41.87 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.4
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC-CCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 001793 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1012)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~-~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~ 380 (1012)
.++++.+++-.+|..++||..-+....+.+.++. .......++..+..-|.|+|.=|=+.||++++.++... |.+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~----p~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH----PDE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC----hHH
Confidence 3578999999999999999999999999887765 33345678888999999999999999999999888765 445
Q ss_pred HHHHHHHhhccC
Q 001793 381 TVKLVAERLRDK 392 (1012)
Q Consensus 381 ~l~~l~eR~rDK 392 (1012)
++..+.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 565555555554
No 51
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.33 E-value=0.13 Score=42.40 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001793 356 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1012)
Q Consensus 356 ekVR~aaV~~i~~la~~~~~---~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1012)
+.||.+|+.+++.++..... ..-.+++..+...++|.+..||..|...||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999976643322 23446788999999999999999999999875
No 52
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=92.01 E-value=28 Score=41.97 Aligned_cols=324 Identities=12% Similarity=0.138 Sum_probs=180.4
Q ss_pred HHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCchhhHHHH-HHHHHhhhhhhhhccCCccHHHHHHHHHHHHh
Q 001793 80 ICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCVVMLDLECDELVNEMYSTFFAV 158 (1012)
Q Consensus 80 l~dilRi~APdaPy~~~~lkdIf~l~~~~~~~L~d~~~~~~~~~~~l-Le~la~vks~vl~~dl~~~~li~~lF~~~~~~ 158 (1012)
|+.++|+.+----|...+.+.+|--+.+-|.+ .++|..|++|+ ++-++.+-- |.+.-.=...=|
T Consensus 45 ls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~te----------dvlm~tssiMkD- 109 (898)
T COG5240 45 LSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTE----------DVLMGTSSIMKD- 109 (898)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcch----------hhhHHHHHHHHh-
Confidence 67889998887788888888888777776653 67889999886 455554322 222111111111
Q ss_pred hcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHh-hcC---CCCh----HHHHH---HHHHHHHhhhhhHHHHHHH
Q 001793 159 ASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSA-LGR---NKND----TARRL---AMNVIEQCAGKLEAGIKQF 227 (1012)
Q Consensus 159 v~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~-~~~---~~~~----~a~~l---a~~v~~~~~~~l~~~i~~~ 227 (1012)
+.++-+..+...-..-|..||++.. ++. ..-+|.+ +.. .... .||.| +.+.+.+-.+.-|..+...
T Consensus 110 ~~~g~~~~~kp~AiRsL~~Vid~~t-v~~--~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l 186 (898)
T COG5240 110 LNGGVPDDVKPMAIRSLFSVIDGET-VYD--FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDL 186 (898)
T ss_pred hccCCccccccHHHHHHHHhcCcch-hhh--HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhH
Confidence 2333444555555556666666632 221 1222322 111 1111 22322 1222222222222222210
Q ss_pred HHHh-hcC-CC-CCCCC---cchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhc
Q 001793 228 LVSS-MSG-DS-RPGHS---HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF 301 (1012)
Q Consensus 228 f~~~-l~~-~~-~~~~~---~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~ 301 (1012)
=+.- ..| .+ .|... ...+..++|++-+..--.++..+..+-..+.-.|-.--..-++.+..++-. .+++..+.
T Consensus 187 ~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q~ 265 (898)
T COG5240 187 KQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQL 265 (898)
T ss_pred hhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHHH
Confidence 0000 011 11 12222 234567899999988877777777776666555544445555556666655 45788888
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHH
Q 001793 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET 381 (1012)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~ 381 (1012)
....+.||+-.-| .|-.+..+..-.+-..|-..+.....+..|+--|.-+.---|.+|...+.++|...++.|+.--
T Consensus 266 rpfL~~wls~k~e---mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 266 RPFLNSWLSDKFE---MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHHhcCcch---hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 8899999964433 4544444443332222322234457788999999999999999999999999998888775421
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHHh
Q 001793 382 VKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR 434 (1012)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~ 434 (1012)
..+-..+-|-+..+--.||++|-+-=. +......+..||+-+=.
T Consensus 343 -~evEsLIsd~Nr~IstyAITtLLKTGt--------~e~idrLv~~I~sfvhD 386 (898)
T COG5240 343 -KEVESLISDENRTISTYAITTLLKTGT--------EETIDRLVNLIPSFVHD 386 (898)
T ss_pred -hhHHHHhhcccccchHHHHHHHHHcCc--------hhhHHHHHHHHHHHHHh
Confidence 123455677777777788877754211 11222345777775543
No 53
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.92 E-value=11 Score=48.65 Aligned_cols=251 Identities=15% Similarity=0.130 Sum_probs=148.3
Q ss_pred CCccHHHHHHHHHHHHhhcCC--------ChhcHHHHHHHHHHHHhccccc----ccHHHHHHHHHhhc---CC------
Q 001793 142 LECDELVNEMYSTFFAVASDD--------HPESVLSSMQTIMIVLLEESED----IQEDLLVILLSALG---RN------ 200 (1012)
Q Consensus 142 l~~~~li~~lF~~~~~~v~~~--------~~~~v~~~m~~Il~~vI~E~~~----v~~~~ld~il~~~~---~~------ 200 (1012)
.+..+.+..|-+.|..-.+++ .-+++...+...+...|.++.. ...-+.|-+++-+. ..
T Consensus 138 ~ds~~i~~~~~e~~~e~es~DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fR 217 (1048)
T KOG2011|consen 138 VDSSSITLSMTELFDERESGDYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFR 217 (1048)
T ss_pred ccchHHHHHHHHHHhhhhhccCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHH
Confidence 345788999999988843332 2456889999999999988755 33444555555432 11
Q ss_pred --CChHHHHHHHHHHHHhhhhhH-HHHHHHHHHhhcCCCCCCCCc-c--------hHHHHHHHHHhhCchhhhhhhhhhh
Q 001793 201 --KNDTARRLAMNVIEQCAGKLE-AGIKQFLVSSMSGDSRPGHSH-I--------DYHEVIYDVYRCSPQILSGVVPYLT 268 (1012)
Q Consensus 201 --~~~~a~~la~~v~~~~~~~l~-~~i~~~f~~~l~~~~~~~~~~-~--------~~h~li~el~~~~P~lL~~Vip~Le 268 (1012)
.+-+|+++-..+|...-.-.+ ....+=--+.=..+ ...+.. + ..++-+-+|-.+.-++.-+| +-
T Consensus 218 hTaTl~~mklmt~Lv~va~~Ls~~~~~tskQleaEr~k-~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sV---FV 293 (1048)
T KOG2011|consen 218 HTATLAAMKLMTALVSVALNLSSHNDKTSKQLEAERNK-SRGNRARLESLLMLRKETQEQQDEIESMINDIFDSV---FV 293 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe---ee
Confidence 111566666666655433222 11111000000001 111110 0 11222222222222222222 22
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHH--HHHhc----ccCCChhHHHHHHHHhHHHHhcCCCCCChhH
Q 001793 269 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1012)
Q Consensus 269 ~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~--~fL~R----~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1012)
+--+.-++++|...++-+|-- .+.||+.|- .||+= .+|+..+||..|++.+..+..+.....-...
T Consensus 294 HRYRDV~~~IRaiCiqeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~l 365 (1048)
T KOG2011|consen 294 HRYRDVDPDIRAICIQELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLEL 365 (1048)
T ss_pred eecccCchHHHHHHHHHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHH
Confidence 334556789999999999954 456666654 34432 5899999999999999997776322222334
Q ss_pred HHHHHHHH-----cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001793 343 ILTALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1012)
Q Consensus 343 i~~~l~~r-----L~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1012)
.+.-++.| ..|.+.-||.......- .......++.+-+..|.+.|-|-++.||+.|+..|-.
T Consensus 366 FtsRFK~RIVeMadrd~~~~Vrav~L~~~~--~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 366 FTSRFKDRIVEMADRDRNVSVRAVGLVLCL--LLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHH--HHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 55555555 47788888876544432 3445667888889999999999999999999887754
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.69 E-value=0.39 Score=44.87 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC--CChhHHHHHHHHHcCCchh
Q 001793 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 356 (1012)
Q Consensus 279 R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~--~~~~~i~~~l~~rL~D~De 356 (1012)
|..+.-.|+..--+-+.......+.+-.--|.-|.|.++.||....|+..+|....... .--.+|.++|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 55555555555333344455666888888899999999999999999999988654321 1135899999999999999
Q ss_pred HHHHHH
Q 001793 357 NVRKQV 362 (1012)
Q Consensus 357 kVR~aa 362 (1012)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.50 E-value=0.32 Score=45.77 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=69.5
Q ss_pred ccCCChhHHHHHHHHhHHHHhcCCCCC---ChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHH
Q 001793 312 LTDRIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKL 384 (1012)
Q Consensus 312 ~~D~s~~VR~~~v~~~~~il~~~~~~~---~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~----~v~~~~l~~ 384 (1012)
..|.++.+|...+.....+-...|... ...++++.+.+.+.|+|++||..++.+++.++..... .+....+..
T Consensus 16 l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~ 95 (120)
T cd00020 16 LSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPK 95 (120)
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHH
Confidence 345557888888888777555433210 0125677888889999999999999999998753321 122235778
Q ss_pred HHHhhccCChhHHHHHHHHHHHH
Q 001793 385 VAERLRDKSVLVKRYTMERLADI 407 (1012)
Q Consensus 385 l~eR~rDKk~~VR~~Ai~~L~~l 407 (1012)
+.+.+.+.+..||+.|+..|+++
T Consensus 96 l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 96 LVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999876
No 56
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=0.32 Score=58.43 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=82.7
Q ss_pred HHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 001793 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 385 (1012)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l 385 (1012)
.+|.--+.|-=-+||.+.|.....+-.++|.. +..-++.|.+-++|-.+.||+.++.++..++.. -.+.++.+..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56777777777899999999999988888875 447888999999999999999999999887776 46788999999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 001793 386 AERLRDKSVLVKRYTMERLAD 406 (1012)
Q Consensus 386 ~eR~rDKk~~VR~~Ai~~L~~ 406 (1012)
.+=+.|....||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999887766654
No 57
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.43 E-value=0.98 Score=54.56 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=77.6
Q ss_pred HHhcccCCChhHHHHHHHHhHHHHhcC---CCC-----CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC--
Q 001793 308 FLKRLTDRIVAVRMSVLEHVKSCLLTD---PSR-----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-- 377 (1012)
Q Consensus 308 fL~R~~D~s~~VR~~~v~~~~~il~~~---~~~-----~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v-- 377 (1012)
|..=.+--+-..|..+++.+++++..- |.. ....++++-|.+|+.|+-+-+|..|++++..+--.+...+
T Consensus 304 ~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~ 383 (1128)
T COG5098 304 FDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR 383 (1128)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch
Confidence 333334456678999999999977532 111 1235788899999999999999999888775433222222
Q ss_pred CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 378 PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 378 ~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
-.++.+.++.|+-||..-||+.|++.++++--.+
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 3467889999999999999999999999987765
No 58
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=91.37 E-value=0.26 Score=38.70 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.1
Q ss_pred hHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHH
Q 001793 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1012)
Q Consensus 327 ~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~ 365 (1012)
...++...|.....+++.+.+..|+.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345555666644556888899999999999999988765
No 59
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.99 E-value=15 Score=44.96 Aligned_cols=140 Identities=14% Similarity=0.175 Sum_probs=111.2
Q ss_pred chHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCC--CCChhhhcHHHHHHHH----hcccCCC
Q 001793 243 IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSANNEQFHSVFSEFL----KRLTDRI 316 (1012)
Q Consensus 243 ~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~--~~~~~~~~~~~~~~fL----~R~~D~s 316 (1012)
.++-..+..|-...|.+.+--+-++..-|.++.-..|--.++..|.+..+. +.+.+..||...+..+ .|+.|.+
T Consensus 280 k~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 280 KDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 345667888999999999999999999999999999999999999887642 3357777877776654 5999999
Q ss_pred hhHHHHHHHHhHHHHhcCCC-CCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh-hcCCCCHHHH
Q 001793 317 VAVRMSVLEHVKSCLLTDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSIPVETV 382 (1012)
Q Consensus 317 ~~VR~~~v~~~~~il~~~~~-~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~-~~~~v~~~~l 382 (1012)
|-+|.+.++-+..|..-+.- .....+++..+..|+.|-.--||..||+-.+.+-.. .|...-...+
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF~~~h~~~l 427 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPFASEHGSQL 427 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCChhhhccchh
Confidence 99999999998876643211 123468999999999999999999999999887663 4554444443
No 60
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.94 E-value=9.3 Score=46.42 Aligned_cols=213 Identities=17% Similarity=0.183 Sum_probs=125.0
Q ss_pred cCCccHHHHHHHHHHH--HhhcC----CChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 001793 141 DLECDELVNEMYSTFF--AVASD----DHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIE 214 (1012)
Q Consensus 141 dl~~~~li~~lF~~~~--~~v~~----~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~~~~~~a~~la~~v~~ 214 (1012)
+++..+++..||..|+ .+..+ --+..+..-+..+|+--+... ..+++++.+++..+....+
T Consensus 267 ~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa-~~~~~~~~i~~~~l~~~~~------------ 333 (501)
T PF13001_consen 267 SLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA-TSFPNILQIVFDGLYSDNT------------ 333 (501)
T ss_pred CCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH-hCCccHHHHHhccccCCcc------------
Confidence 3556678888888888 32111 123445555555555433222 3445566666655532211
Q ss_pred HhhhhhHHHHHHHH---HHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhh----ccccCCChHHHHHHHHHHH
Q 001793 215 QCAGKLEAGIKQFL---VSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVG 287 (1012)
Q Consensus 215 ~~~~~l~~~i~~~f---~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le----~eL~se~~~~R~~At~~lg 287 (1012)
..|++..-.+|+ ..+... -=...+-...|.++...+|.++ ....+++...|..|=+++|
T Consensus 334 --~~klk~~~l~F~~~~~~~~~~------------~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 334 --NSKLKSLALQFIRGSSWIFKH------------ISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred --ccccchhcchhhhcchHHhhh------------cCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 123333333333 111110 0011223566777777888884 3466789999999999999
Q ss_pred HhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC-----hhHHH-HHHHHHcCCchhHHHHH
Q 001793 288 DLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-----APQIL-TALCDRLLDFDENVRKQ 361 (1012)
Q Consensus 288 ~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-----~~~i~-~~l~~rL~D~DekVR~a 361 (1012)
.+..... .+....-++-.-+.....+-.++||...-++...++.+-+.... ..... ..+.....+....+|.+
T Consensus 400 ~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~ 478 (501)
T PF13001_consen 400 LLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYA 478 (501)
T ss_pred HHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8887654 33444455555666667888999999999998887654332111 11111 22333445777889999
Q ss_pred HHHHHHHhhhhhcCCCCHHHHH
Q 001793 362 VVAVICDVACHALNSIPVETVK 383 (1012)
Q Consensus 362 aV~~i~~la~~~~~~v~~~~l~ 383 (1012)
||+-.. ++..+++++...+.
T Consensus 479 avk~an--~~fpf~d~~aR~i~ 498 (501)
T PF13001_consen 479 AVKYAN--ACFPFSDVPARYIC 498 (501)
T ss_pred HHHHHH--HhCCccchHHHHHH
Confidence 999877 57888888776553
No 61
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.02 E-value=40 Score=45.11 Aligned_cols=329 Identities=15% Similarity=0.224 Sum_probs=158.3
Q ss_pred HHHHHHhcchhhhcCCCcchHHHHHHHH--HHHHhhcCCCCCCCc--hHHHHHHHHHHHhccCCCCCCCCchhhHHHHHH
Q 001793 53 QPFLNAIVQPVLLKHQDKDVKLLVATCI--CEITRITAPEAPYSD--DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILE 128 (1012)
Q Consensus 53 ~~~~~~L~~~~lL~h~d~~Vr~~~acCl--~dilRi~APdaPy~~--~~lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe 128 (1012)
+.+.+++.+.=|=+=.++.-|+--|||+ +|++|= .|+++ +.+.+++.-.++....+.+. --.-..-...
T Consensus 1034 d~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g----~~~~~~~e~lpelw~~~fRvmDDIKEs---VR~aa~~~~~ 1106 (1702)
T KOG0915|consen 1034 DEYLNEILDELLVNLTSKEWRVREASCLALADLLQG----RPFDQVKEKLPELWEAAFRVMDDIKES---VREAADKAAR 1106 (1702)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3444444444344458899888889986 599986 67765 67888877777765444331 1111122333
Q ss_pred HHHhhhhhhhhccCC----ccHHHHHH--------------------HHHHHHhhcCCChhcHHHHHHHHHHHHhccccc
Q 001793 129 TLAKYRSCVVMLDLE----CDELVNEM--------------------YSTFFAVASDDHPESVLSSMQTIMIVLLEESED 184 (1012)
Q Consensus 129 ~la~vks~vl~~dl~----~~~li~~l--------------------F~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~ 184 (1012)
.++. .||-++|.. +.+.+.-+ ..+..+++ +.-++.+..+..+..-.+++-.+.
T Consensus 1107 ~lsK--l~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~-Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1107 ALSK--LCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLA-KSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHH--HHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHH-HhchhhhcchhhHHHHHHHHHccc
Confidence 3433 466667752 22222211 12222222 112333444444444444555555
Q ss_pred ccHHHHHHHHHhh----------------------------------------------------cCCCChHHHHHHHHH
Q 001793 185 IQEDLLVILLSAL----------------------------------------------------GRNKNDTARRLAMNV 212 (1012)
Q Consensus 185 v~~~~ld~il~~~----------------------------------------------------~~~~~~~a~~la~~v 212 (1012)
+.+.||..+--.. +-+.+..+..+-..+
T Consensus 1184 lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L 1263 (1702)
T KOG0915|consen 1184 LEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLL 1263 (1702)
T ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHH
Confidence 5555555433211 001111334455555
Q ss_pred HHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchH-HHHHHHHHhh-CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhh
Q 001793 213 IEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDY-HEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1012)
Q Consensus 213 ~~~~~~~l~~~i~~~f~~~l~~~~~~~~~~~~~-h~li~el~~~-~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~ 290 (1012)
..+|..-|.||.-.+|+-.+.|-........++ -.-.--|.++ .|+=-...+-.+-.++..++++.+..+..++.+ |
T Consensus 1264 ~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-I 1342 (1702)
T KOG0915|consen 1264 VQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-I 1342 (1702)
T ss_pred HHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-H
Confidence 555666666666666665554422111111111 1111112222 443444444444455555666666777777776 5
Q ss_pred cCCCCChhhhcHHHHH--HHHhcccCCChhHHHHHHHHhHHHHhcCCCC--CChhHHHHHHHHHc-CCchhHHHHHHHHH
Q 001793 291 AVPGSANNEQFHSVFS--EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRL-LDFDENVRKQVVAV 365 (1012)
Q Consensus 291 s~~~~~~~~~~~~~~~--~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~--~~~~~i~~~l~~rL-~D~DekVR~aaV~~ 365 (1012)
+....+..+.|.+..- .||.++.+ .-+.=-.|-+.=-.+....-.+ -...+++..+++.. .+.-.++|..+.++
T Consensus 1343 an~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Aka 1421 (1702)
T KOG0915|consen 1343 ANYSQEMLKNYASAILPLIFLAMHEE-EKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKA 1421 (1702)
T ss_pred HHhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 5443333334433332 45555544 1111111111111111000000 01135555555554 45559999999999
Q ss_pred HHHhhhhhcCCCCHHH--------HHHHHHhhccCC
Q 001793 366 ICDVACHALNSIPVET--------VKLVAERLRDKS 393 (1012)
Q Consensus 366 i~~la~~~~~~v~~~~--------l~~l~eR~rDKk 393 (1012)
+..++...-+.+|.+. +.++..|+=|=|
T Consensus 1422 i~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGK 1457 (1702)
T KOG0915|consen 1422 IRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGK 1457 (1702)
T ss_pred HHHHcccccccCChHHHHHHHHHHHHHhhccccccH
Confidence 9988887777777543 346666665544
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.95 E-value=2.4 Score=49.97 Aligned_cols=54 Identities=20% Similarity=0.096 Sum_probs=26.5
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001793 346 ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1012)
Q Consensus 346 ~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1012)
.+..-|.|.|..||.+|+.+++.+-.. . .+..+..-+.|....||..|+.+++.
T Consensus 151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--~-----a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 151 ALEAALTHEDALVRAAALRALGELPRR--L-----SESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccc--c-----chHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 334444466666666666666543211 1 11112233556666666666666643
No 63
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.80 E-value=19 Score=40.64 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=73.9
Q ss_pred HHHHHHHhc-ccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh-hcCCC---
Q 001793 303 SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSI--- 377 (1012)
Q Consensus 303 ~~~~~fL~R-~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~-~~~~v--- 377 (1012)
++++.++-. ..-.++.||..-+++.+-+-.-+. ..+.+-+.-+...+...++.||..|++++.|+... ....+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence 667776632 233457999999999986544333 23445555555555444999999999999999753 22222
Q ss_pred C--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 378 P--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 378 ~--------~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
+ ..+++.+.+-+.+-...||..|.++++++.-.
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 2 24566777777777889999999999998875
No 64
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.47 E-value=2 Score=50.71 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=82.3
Q ss_pred hhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHH
Q 001793 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1012)
Q Consensus 266 ~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~ 345 (1012)
.|-.-|.+++..+|..++..+|..-..+ + .....+|+ |.++.||.+-+...+.+= .+ +...
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r~~~~-------~-~~L~~~L~---d~d~~Vra~A~raLG~l~--~~------~a~~ 181 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAHRHDP-------G-PALEAALT---HEDALVRAAALRALGELP--RR------LSES 181 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccCh-------H-HHHHHHhc---CCCHHHHHHHHHHHHhhc--cc------cchH
Confidence 3444557889999999999999733221 1 24455554 999999999999998632 11 3455
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHhhhh----------hcCCC--------------CHHHHHHHHHhhccCChhHHHHHH
Q 001793 346 ALCDRLLDFDENVRKQVVAVICDVACH----------ALNSI--------------PVETVKLVAERLRDKSVLVKRYTM 401 (1012)
Q Consensus 346 ~l~~rL~D~DekVR~aaV~~i~~la~~----------~~~~v--------------~~~~l~~l~eR~rDKk~~VR~~Ai 401 (1012)
.|..-+.|.|+.||.+|+.+...+-.. .-... +.+.+..+.+.++|.. ||..++
T Consensus 182 ~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~ 259 (410)
T TIGR02270 182 TLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREAL 259 (410)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHH
Confidence 566679999999999999887655210 00011 1233445566667754 999999
Q ss_pred HHHHHHHH
Q 001793 402 ERLADIFR 409 (1012)
Q Consensus 402 ~~L~~lY~ 409 (1012)
..||++=.
T Consensus 260 ~AlG~lg~ 267 (410)
T TIGR02270 260 RAVGLVGD 267 (410)
T ss_pred HHHHHcCC
Confidence 99986543
No 65
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.29 E-value=2.7 Score=50.90 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=81.6
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001793 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1012)
Q Consensus 297 ~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~ 376 (1012)
....-..+|+....=++|.++.||...++..-. |. +. ......+.+-..+-+-|.++.||.+||+.+.=.+...+-.
T Consensus 192 ~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~-L~-eg-~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~ 268 (823)
T KOG2259|consen 192 LTHDREHAARGLIYLEHDQDFRVRTHAVEGLLA-LS-EG-FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP 268 (823)
T ss_pred ccccHHHHHHHHHHHhcCCCcchHHHHHHHHHh-hc-cc-ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 444556788887777899999999998887433 21 11 1223455677778899999999999999998666544311
Q ss_pred C---------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 377 I---------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 377 v---------~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
. -++.+..+.+=++|..+.||.+|.+.||.+=+.
T Consensus 269 ~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 269 LERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV 311 (823)
T ss_pred ccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh
Confidence 1 124577899999999999999999999987654
No 66
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=9.2 Score=47.47 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhh
Q 001793 221 EAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQ 300 (1012)
Q Consensus 221 ~~~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~ 300 (1012)
+.....|+.+++.++++ .+-.....+.|..+-+..|+.=-.-+-.|..-. ||-..+..+|+.++.+--+ | -...
T Consensus 389 ~~~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rILhlLG~E-g--P~a~ 462 (865)
T KOG1078|consen 389 HTVMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRILHLLGKE-G--PKAP 462 (865)
T ss_pred HHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHHHHHHhcc-C--CCCC
Confidence 33555677777766322 112224577777777777775444333333322 4567788999999866543 2 1234
Q ss_pred cHHHHHHH-HhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHH
Q 001793 301 FHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1012)
Q Consensus 301 ~~~~~~~f-L~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~ 365 (1012)
.|+-|-.| .+|-.=-+..||.+.|.+...|....+.. .+.|...|.++++|.|+.||-.|--.
T Consensus 463 ~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 463 NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHHH
Confidence 45555544 47777778899999999999999666542 35788999999999999999885333
No 67
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.74 E-value=5.4 Score=50.74 Aligned_cols=151 Identities=16% Similarity=0.269 Sum_probs=111.7
Q ss_pred hhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCC--C-------------------C-------------hhh----
Q 001793 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--S-------------------A-------------NNE---- 299 (1012)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~--~-------------------~-------------~~~---- 299 (1012)
+++..+-|.++.++.+.+=..|..|++-+...+..++ . | ++.
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999998765 1 0 011
Q ss_pred ---hc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh-hhc
Q 001793 300 ---QF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 374 (1012)
Q Consensus 300 ---~~-~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~-~~~ 374 (1012)
.| ...+..+|.|+-|+-+.+|-..++++-.++.+.+ ...+.+.+..-+.+-..++|...-..+...-. ...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 11 4567788899999999999999999888777554 24666777777778888888775444432211 111
Q ss_pred CCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001793 375 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1012)
Q Consensus 375 ~~v~~----~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~ 412 (1012)
..++. .+...+.-.+.|+...||+.|.+.++.+++.+-
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 22333 345678888999999999999999999999763
No 68
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=87.82 E-value=5.8 Score=46.54 Aligned_cols=168 Identities=13% Similarity=0.139 Sum_probs=114.4
Q ss_pred HHhh-CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 001793 252 VYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1012)
Q Consensus 252 l~~~-~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1012)
+|.- --++|..++--|-. ++++..|..|.+.|++|...+...+...---+-..+|.-..|....|=....+.|-..
T Consensus 322 vWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~ 398 (516)
T KOG2956|consen 322 VWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTT 398 (516)
T ss_pred HHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHH
Confidence 4552 33444444433322 5789999999999999999887667666667788999999999999988899999888
Q ss_pred HhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH--------HHHHHhhccCChhHHHHHHH
Q 001793 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV--------KLVAERLRDKSVLVKRYTME 402 (1012)
Q Consensus 331 l~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l--------~~l~eR~rDKk~~VR~~Ai~ 402 (1012)
+.+|.-. .-+.-+..++.-.||..=.++++....+ ++.++.|.| =.+.+=.-.-...|||.|+=
T Consensus 399 las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl----~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVf 470 (516)
T KOG2956|consen 399 LASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKL----FERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVF 470 (516)
T ss_pred HHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHH----HhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHH
Confidence 8876421 2344555666668888888888775443 344444433 23444444455689999999
Q ss_pred HHHHHHHHhhhhccCCCcchhhcccchHHHHhh
Q 001793 403 RLADIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1012)
Q Consensus 403 ~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~~ 435 (1012)
+|-.+|+..-- ..-...+...++.-+++
T Consensus 471 CLVamv~~vG~-----~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 471 CLVAMVNRVGM-----EEMEPHLEQLTSSKLNL 498 (516)
T ss_pred hHHHHHHHHhH-----HhhhhHhhhccHHHHHH
Confidence 99999997521 11224455666655544
No 69
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.75 E-value=2.8 Score=52.50 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=118.2
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHHHHhhcCCC-CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC--
Q 001793 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-- 337 (1012)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~-~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-- 337 (1012)
..+.|-|.....+..-..|-.=.+.|+..++.-. .-+..+.|.++--.|.-..=.++.||..-.+..+..+..++..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 4577777777777788888888888888887532 2345678999999999999999999999999999988877652
Q ss_pred CChhHHHHHHHHHcCCch---hHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001793 338 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 338 ~~~~~i~~~l~~rL~D~D---ekVR~aaV~~i~~la~~~~----~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
.....+++.+..--.|.| --||..|.+....+....+ ...-+++++.+..=+-|||..||++|+++=.+-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334577888887778888 6899999999998876333 33456889999999999999999999987665543
No 70
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=86.93 E-value=2.5 Score=52.91 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.5
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 001793 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 382 (1012)
Q Consensus 304 ~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~-~l 382 (1012)
.-+.|++=+.|.++.||...+.....+ +..+....+++.+.+++.|++..||..|+-++.++-.-+.+.+++. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 457888889999999999999886642 2223456778899999999999999999999998776677777776 67
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 383 KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 383 ~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
..+.+.+.|-.+.|=..|..+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999987
No 71
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=86.50 E-value=14 Score=46.09 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=75.4
Q ss_pred Cchhhhhhhhhhhcccc----CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhccc---CCChhHHHHHHHHhH
Q 001793 256 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 328 (1012)
Q Consensus 256 ~P~lL~~Vip~Le~eL~----se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~---D~s~~VR~~~v~~~~ 328 (1012)
.+.+...+++.|..+|. ..+...++.+.+.||.| +. |.+...++.-.. +.+..||.+++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~---------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GH---------PESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CC---------chhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 44555556666666665 56789999999999987 22 233334443333 559999999999998
Q ss_pred HHHhcCCCCCChhHHHHHHHHHcCCchh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHH
Q 001793 329 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMER 403 (1012)
Q Consensus 329 ~il~~~~~~~~~~~i~~~l~~rL~D~De--kVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~-rDKk~~VR~~Ai~~ 403 (1012)
.+....| ..+.+.|..-+.|..+ .||.+|+..+-. ..-|...+..++..+ .|+...|+.-....
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHh
Confidence 7654444 2555666666655443 499997766542 123566788888877 67777777655443
No 72
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.31 E-value=71 Score=41.87 Aligned_cols=284 Identities=14% Similarity=0.126 Sum_probs=161.8
Q ss_pred HHHHHHHhhhhhhhhccCC--ccHHHHHHHHHHHHhhcCCC---hhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcC
Q 001793 125 VILETLAKYRSCVVMLDLE--CDELVNEMYSTFFAVASDDH---PESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1012)
Q Consensus 125 ~lLe~la~vks~vl~~dl~--~~~li~~lF~~~~~~v~~~~---~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~ 199 (1012)
++|+....+--.+...+++ ..++...++...-+.+++.. .........|++..+..-.+.=+-.-+..+...+..
T Consensus 585 ~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~ 664 (1176)
T KOG1248|consen 585 KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFEN 664 (1176)
T ss_pred ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhc
Confidence 5666665554343334444 36777777777766654432 223444455555555433322222223344444444
Q ss_pred CCCh----HHHHHHHHHHHHhhhhhHHHHHHH----HHHhhcCC-CCCCCCcchHHHHHHHHHhhCc----hhhhhhhhh
Q 001793 200 NKND----TARRLAMNVIEQCAGKLEAGIKQF----LVSSMSGD-SRPGHSHIDYHEVIYDVYRCSP----QILSGVVPY 266 (1012)
Q Consensus 200 ~~~~----~a~~la~~v~~~~~~~l~~~i~~~----f~~~l~~~-~~~~~~~~~~h~li~el~~~~P----~lL~~Vip~ 266 (1012)
+-+. -+|++-..++.. ..-+.++.|. |+.+...- ..++......+.-+..|++.+| +++...||.
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~--~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS--PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3121 678888888877 3333344433 33222111 1111122345666667777777 666666666
Q ss_pred hhccccCCChHHHHHHHHHHHHhhcCC-CCChhhhc-HHHHHHHHhcc-----cCCChhHHHHHHHHhHHHHhcC---CC
Q 001793 267 LTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQF-HSVFSEFLKRL-----TDRIVAVRMSVLEHVKSCLLTD---PS 336 (1012)
Q Consensus 267 Le~eL~se~~~~R~~At~~lg~m~s~~-~~~~~~~~-~~~~~~fL~R~-----~D~s~~VR~~~v~~~~~il~~~---~~ 336 (1012)
+=--++..|+..|..|-++|--|-+.. ..++...- ++.-+.|+.-. +| +.-++..=+-++..|+... .+
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e~~~~ld 821 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQEFKNILD 821 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHhcccc
Confidence 665567789999999999887666311 11122222 44555555433 33 3333333233444555432 22
Q ss_pred CCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC-CC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 337 RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-SI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 337 ~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~-~v---~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
.+....+++.++-.|.-.-..||.+||..+.-+.+.-+. .+ -+++|.++..-+.|+|..||...-..|=++-+.+
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 223457888899999999999999999988755443222 11 2246788889999999999998877777777765
No 73
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=84.74 E-value=87 Score=36.57 Aligned_cols=322 Identities=13% Similarity=0.074 Sum_probs=177.5
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCCc---hHHHHHHHHHHHhcc---CCCCC-CCCchhhHHHHHHHHHhhhhhhh
Q 001793 66 KHQDKDVKLLVATCICEITRITAPEAPYSD---DVLKDIFQLIVGTFS---GLKDT-GGPSFGRRVVILETLAKYRSCVV 138 (1012)
Q Consensus 66 ~h~d~~Vr~~~acCl~dilRi~APdaPy~~---~~lkdIf~l~~~~~~---~L~d~-~~~~~~~~~~lLe~la~vks~vl 138 (1012)
...|++=|.-+-..|+..+|.|--. |..+ +.+.-+.+++-+=+. +=++| ++..+.|..-+|-.+-.--.++-
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~-~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNL-PDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3455555555555689999998422 2222 334444444444222 22233 44456666666666654433433
Q ss_pred hccCCccHHHHHHHHHHHHhh-cCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhh---cC-CCCh----HHHHHH
Q 001793 139 MLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL---GR-NKND----TARRLA 209 (1012)
Q Consensus 139 ~~dl~~~~li~~lF~~~~~~v-~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~---~~-~~~~----~a~~la 209 (1012)
.++ ++...-+..+..... .++.++.+...-..++..-==....++.+..+.|+.-+ .. -++. .+-.+=
T Consensus 82 ~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 82 TLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 232 333334444444443 45567777666666655311111224455555555432 21 1121 567788
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhcCC-CCCCCCcchHHHHHHHHHhhCc-h-hhhh-hhhhhhccccCCChHHHHHHHHH
Q 001793 210 MNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCSP-Q-ILSG-VVPYLTGELLTDQLDTRLKAVGL 285 (1012)
Q Consensus 210 ~~v~~~~~~~l~~~i~~~f~~~l~~~-~~~~~~~~~~h~li~el~~~~P-~-lL~~-Vip~Le~eL~se~~~~R~~At~~ 285 (1012)
+.++.++.+.|...+..+|..++.+- +.......++..+..++-.+.+ + .+.. +...+...+..+ ..-..-++.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~ 236 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHH
Confidence 89999999999999988876554321 0011112235556655544432 2 2222 333344444333 777888888
Q ss_pred HHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHH
Q 001793 286 VGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1012)
Q Consensus 286 lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~ 365 (1012)
+.+|+.+++. ...=|++|..+.+=..+.- +. ..+..++.+.-.+.+++.+|..||.+|..+
T Consensus 237 L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~--------------~~---~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 237 LKEMIKSKDE--YKLAMQIWSVVILLLGSSR--------------LD---SWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred HHHHHhCcCC--cchHHHHHHHHHHHhCCch--------------hh---ccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999998531 2333889987765432211 11 112345788888899999999999999988
Q ss_pred HHHhhhhh-cC-CCCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHhh
Q 001793 366 ICDVACHA-LN-SIPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGCC 412 (1012)
Q Consensus 366 i~~la~~~-~~-~v~~~~l~--------~l~eR~rDKk~-~VR~~Ai~~L~~lY~~~~ 412 (1012)
=.-+.+.. .+ ..+.+.++ .+..+.-+|.. .+|..++.+++.++-..+
T Consensus 298 W~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~f 355 (372)
T PF12231_consen 298 WRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYAF 355 (372)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHHh
Confidence 77766522 22 12233332 33333333333 889999999998764433
No 74
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=83.38 E-value=9.1 Score=43.59 Aligned_cols=127 Identities=23% Similarity=0.330 Sum_probs=88.6
Q ss_pred chhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCC------------hhHHHHHH
Q 001793 257 PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI------------VAVRMSVL 324 (1012)
Q Consensus 257 P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s------------~~VR~~~v 324 (1012)
|..+-..++.++. .++..+|..|...+|++-.... +...+.-.+|.. -.+|...+
T Consensus 104 ~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 104 PEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred hhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 5555555555554 7999999999999998876542 222222222222 15676666
Q ss_pred HHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001793 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1012)
Q Consensus 325 ~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1012)
+..+. .++ .+....+...+.|.+..||.++..+++++.... ......+...+.|-.+.||..++..|
T Consensus 171 ~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~~vr~~~~~~l 237 (335)
T COG1413 171 EALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESLEVRKAALLAL 237 (335)
T ss_pred HHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 66543 121 356778888999999999999999999776654 44556778889999999999999999
Q ss_pred HHHHH
Q 001793 405 ADIFR 409 (1012)
Q Consensus 405 ~~lY~ 409 (1012)
|.+=.
T Consensus 238 ~~~~~ 242 (335)
T COG1413 238 GEIGD 242 (335)
T ss_pred cccCc
Confidence 87543
No 75
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=82.98 E-value=2.8 Score=42.77 Aligned_cols=121 Identities=14% Similarity=0.187 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001793 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1012)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1012)
.-+++.++++..+..-..++-++-+.+-+.....-..=+.+|+.|.... ......|.+.-+.|++-+....+++-...+
T Consensus 38 G~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll 116 (158)
T PF14676_consen 38 GIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLL 116 (158)
T ss_dssp HHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3578888999999988888888888887665553345578888888763 356678889999999999999999999999
Q ss_pred HHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001793 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1012)
Q Consensus 325 ~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1012)
.+.--++..+++ ....++--|++-+.-.|..+|..||..+++
T Consensus 117 ~Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 117 RALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 999998887764 334678888999999999999999998864
No 76
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.46 E-value=47 Score=40.99 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=90.7
Q ss_pred hhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCC-------hhhhcHHHHHHHHhcc-cCCChhHHHHHHH
Q 001793 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-------NNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1012)
Q Consensus 254 ~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-------~~~~~~~~~~~fL~R~-~D~s~~VR~~~v~ 325 (1012)
+-.|+++....+.++..-...+..+|.-|+-.+|.|.-.--.+ ..+++-......|+.. .+.+...+..+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 4467777777777877766778899999999999888421111 1223333333333332 3456667888888
Q ss_pred HhHHHHhcCCCCCChhHHHHHHHHHcC---CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 001793 326 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 402 (1012)
Q Consensus 326 ~~~~il~~~~~~~~~~~i~~~l~~rL~---D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~ 402 (1012)
+.++ ..+| ..++.+...+. +....||.+||.++..++...++.+-.-++....+ ++..++||-.|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8775 2233 34444444444 45678999999999987776655554444443322 2244789998887
Q ss_pred HHHHH
Q 001793 403 RLADI 407 (1012)
Q Consensus 403 ~L~~l 407 (1012)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77653
No 77
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=81.79 E-value=2.6 Score=30.51 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.1
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
+-.+.+.+.|..+.||..|...|+++.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44567888999999999999999999864
No 78
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=81.32 E-value=12 Score=42.59 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=21.6
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
...+.++.+|....||..|...|+.+-..
T Consensus 182 ~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 182 IPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred hHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 44566777777778888888888877654
No 79
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=1.6e+02 Score=37.21 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=117.7
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 001793 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1012)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1012)
+|--+.+-.+-.|++=+--|-.+.--|...|.-+|--|.++++.|= +..--|-.-.+--+-..|.+|-||....
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3555566667789998888899999999999999999999887542 3333466777778889999999999999
Q ss_pred HHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001793 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1012)
Q Consensus 325 ~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1012)
-+++.+..-.|+ .-.++++.+...|.|.+..|=-+||.|+.++....++.+-..- +.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e--~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkny-rklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPE--QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNY-RKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChh--hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHH-HHHHhhccchhhhhHHHHHHHH
Confidence 999998876665 3348999999999999999999999999987777776554431 1122222222111122456666
Q ss_pred HHHHHHhhhhc
Q 001793 405 ADIFRGCCLRN 415 (1012)
Q Consensus 405 ~~lY~~~~~~~ 415 (1012)
.+.-+++..+.
T Consensus 242 ~RYAR~~l~~P 252 (968)
T KOG1060|consen 242 TRYARHQLPDP 252 (968)
T ss_pred HHHHHhcCCCc
Confidence 66655555544
No 80
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=80.25 E-value=9.5 Score=49.57 Aligned_cols=138 Identities=20% Similarity=0.213 Sum_probs=100.1
Q ss_pred CcchHHHHHHHHH-----hhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCC
Q 001793 241 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1012)
Q Consensus 241 ~~~~~h~li~el~-----~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~ 315 (1012)
....-.++...+| +..| +.+-.|-+-.-+.+....+|..|.+.+|.||.. .-...+-.+.+.++-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3344556666666 2344 667788888889999999999999999999976 34566777777777777788
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh--------hcCCCCHHHHH
Q 001793 316 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETVK 383 (1012)
Q Consensus 316 s~~VR~~~v~~~~~il~~~~~~---~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~--------~~~~v~~~~l~ 383 (1012)
+--+|.+-....-..|.....+ .-..-++.-|..|+-|.+|.||.+|-+++..+... ++..+|.+++.
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~ 945 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLA 945 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHH
Confidence 8888877777666666532211 11235678889999999999999999999887642 23456777763
No 81
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=2.1e+02 Score=37.69 Aligned_cols=313 Identities=13% Similarity=0.114 Sum_probs=174.4
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhcc
Q 001793 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1012)
Q Consensus 62 ~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~d 141 (1012)
..+.+-.-.-||--.|--+|+|-|---|+ +--++.+|++.... +++.+.-.-.++||.++.++..- .+
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~---~~ 153 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGN---TL 153 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhcc---cc
Confidence 34555666779999999999999988888 55578888888754 34444445568888888775321 11
Q ss_pred CCccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc--c-ccHHHHHH---HHH---hhcCCCChHHHHHHHHH
Q 001793 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--D-IQEDLLVI---LLS---ALGRNKNDTARRLAMNV 212 (1012)
Q Consensus 142 l~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~--~-v~~~~ld~---il~---~~~~~~~~~a~~la~~v 212 (1012)
-+--+-+..||...+.- ++++ |...-..-++.++...+ . .-...-+. ++. .+.+.....+...+-+.
T Consensus 154 ~~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred chhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 12234566666665542 2233 77777777777776654 1 11111111 111 11122222233334444
Q ss_pred HHHhhhhhHHHHHHHHHHhhc-----CCCCCCCC--cchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHH
Q 001793 213 IEQCAGKLEAGIKQFLVSSMS-----GDSRPGHS--HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGL 285 (1012)
Q Consensus 213 ~~~~~~~l~~~i~~~f~~~l~-----~~~~~~~~--~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~ 285 (1012)
+..-++.--+.+..+|.+++. -++...+. ...+.++|.-+-+.+|.+.---=| +-+ .....+
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~~~ 298 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVPVL 298 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHHHH
Confidence 444444444444444444331 11111122 223677888777777765433111 111 111122
Q ss_pred HHHhhcCCCCChhhhcHHHHHHHHh-cccCCCh-hHHHHHHHHhHHHHhcCCCC-CChhHHHHHHHHHcCCchhHHHHHH
Q 001793 286 VGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDENVRKQV 362 (1012)
Q Consensus 286 lg~m~s~~~~~~~~~~~~~~~~fL~-R~~D~s~-~VR~~~v~~~~~il~~~~~~-~~~~~i~~~l~~rL~D~DekVR~aa 362 (1012)
+. |...-..+ .+|.+ --.|.+. +.=.-..+.+-+-+..+..+ -..+-+.+++..-|.-+|++=|.|+
T Consensus 299 l~-~mte~~~D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~Aa 368 (1075)
T KOG2171|consen 299 LA-MMTEEEDD---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAA 368 (1075)
T ss_pred HH-hcCCcccc---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHH
Confidence 22 22221111 45554 1111111 22222334445556655432 2346788999999999999999999
Q ss_pred HHHHHHhhhhhcCC---CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 363 VAVICDVACHALNS---IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 363 V~~i~~la~~~~~~---v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
..+++.++.-..+. .=++++..+..-+.|-++.||-.|.+.+|++=-..
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 99999877433322 23356778889999999999999999999886554
No 82
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=79.28 E-value=2.2e+02 Score=37.38 Aligned_cols=179 Identities=14% Similarity=0.152 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHH-------HHHhhcCCCCCCCCcch--HHHHHHHHHhhCchhhh-hhhhhhhccccCC
Q 001793 205 ARRLAMNVIEQCAGKLEAGIKQF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLTD 274 (1012)
Q Consensus 205 a~~la~~v~~~~~~~l~~~i~~~-------f~~~l~~~~~~~~~~~~--~h~li~el~~~~P~lL~-~Vip~Le~eL~se 274 (1012)
+--+|.....+|-..+..+|.+| |+..+..+=.-=+..++ +-.-+.+|....|+.+. .|+|.|=....+.
T Consensus 515 ~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 515 IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSK 594 (1133)
T ss_pred cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCC
Confidence 34566666677777777777665 44433331000001111 22334458899999999 5999999999999
Q ss_pred ChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCc
Q 001793 275 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 354 (1012)
Q Consensus 275 ~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~ 354 (1012)
+...|..++...|...++-. .-+|-+.. ..+=|++|... ++..+.++-.+.
T Consensus 595 ~~~~r~g~~la~~ev~~~~~----~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 595 DASMRHGVFLAAGEVIGALR----KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFYR 645 (1133)
T ss_pred ChHHhhhhHHHHHHHHHHhh----hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhcc
Confidence 99999999999999887521 11122211 22334444322 111222222222
Q ss_pred h--hHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 001793 355 D--ENVRKQVVAVICDVACHALNS----IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1012)
Q Consensus 355 D--ekVR~aaV~~i~~la~~~~~~----v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~ 413 (1012)
- +..|.++++.|..+.-.+... +.+.....+++-.++-+ .+|..|...++.++..|..
T Consensus 646 g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 2 455555555555443333221 11222233444444555 7899999999999998864
No 83
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=78.79 E-value=1.3e+02 Score=40.69 Aligned_cols=247 Identities=17% Similarity=0.235 Sum_probs=134.9
Q ss_pred HhccCCCCCC---CCchhhHHHHHHHHHhhhhhh-hhccCCccHHHHHH---------HHHHHHhhcCCChhcHHHHHHH
Q 001793 107 GTFSGLKDTG---GPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 173 (1012)
Q Consensus 107 ~~~~~L~d~~---~~~~~~~~~lLe~la~vks~v-l~~dl~~~~li~~l---------F~~~~~~v~~~~~~~v~~~m~~ 173 (1012)
.+|++++.|. +....++.++|.++-.+-.-- ..+|=.-++|+..| .+..+..+.+--|+++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 4677777762 333445667777665532110 11111124555555 5556666667779999999998
Q ss_pred HHHHHhcccccccHHHHHHHHH-hhcCC-CCh---------HHHHHHHHHHHHhhhh--------hHHHH--HHHHHHhh
Q 001793 174 IMIVLLEESEDIQEDLLVILLS-ALGRN-KND---------TARRLAMNVIEQCAGK--------LEAGI--KQFLVSSM 232 (1012)
Q Consensus 174 Il~~vI~E~~~v~~~~ld~il~-~~~~~-~~~---------~a~~la~~v~~~~~~~--------l~~~i--~~~f~~~l 232 (1012)
++..-..-...-|...|..|+. ++... .++ +--++...-+..-... |+.|+ -+||++
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~-- 925 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNG-- 925 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 8887776666789999998886 33221 111 2222222222211111 22222 123331
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCC-hHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhc
Q 001793 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR 311 (1012)
Q Consensus 233 ~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~-~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R 311 (1012)
.....-+.+.+|-+-.+.-+..|+-++-. +.+ ...-.+.+.+++.+=. ++ ...++.|..-|.+
T Consensus 926 --------~~~~~e~~i~~lr~~~~~d~~kVv~~i~S---Hs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 926 --------RDSHYEDVILRLREENKKDLKKVVDIILS---HSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRK 989 (2196)
T ss_pred --------CcchHHHHHHHHHHhhhhHHHHHHHHHHc---chhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHH
Confidence 01122345555555555555555544422 222 2223445556665554 33 3446667777777
Q ss_pred ccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHH-------------------HHHHHcCCc---------------hhH
Q 001793 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT-------------------ALCDRLLDF---------------DEN 357 (1012)
Q Consensus 312 ~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~-------------------~l~~rL~D~---------------Dek 357 (1012)
+.+-+...-.+..-.|.+||...|+.....+.++ ....+|.|+ |+.
T Consensus 990 l~~L~~~~~~eVal~Ar~iLi~~ps~~~R~n~~e~i~~s~i~~~g~~~~~~~~~~l~~lidS~~~v~dvL~~fF~H~d~~ 1069 (2196)
T KOG0368|consen 990 LTELNHTNTSEVALKARQILIQSPSYELRHNQIESILKSSIVMTGYQFKKPCLEILKELIDSNLSVFDVLPGFFYHSDPT 1069 (2196)
T ss_pred HHhhccchHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhhhhcccCcccccchhHHHhhccchhhHHHHHHHhhccccHH
Confidence 7777777777777777777777665333222222 112456666 999
Q ss_pred HHHHHHHHHHHhhh
Q 001793 358 VRKQVVAVICDVAC 371 (1012)
Q Consensus 358 VR~aaV~~i~~la~ 371 (1012)
|+.++++.+..-|+
T Consensus 1070 v~~~alevYv~ray 1083 (2196)
T KOG0368|consen 1070 VSSAALEVYVRRAY 1083 (2196)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876443
No 84
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.38 E-value=2.8 Score=32.92 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHhhhhhcCCCC-HHHHHHHHHhhccCChhHHHHHHHHH
Q 001793 366 ICDVACHALNSIP-VETVKLVAERLRDKSVLVKRYTMERL 404 (1012)
Q Consensus 366 i~~la~~~~~~v~-~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1012)
+..+...++.... ..++..+..|+.|.++.||+.|+..+
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4444455544443 35678999999999999999998753
No 85
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=77.88 E-value=19 Score=45.52 Aligned_cols=124 Identities=21% Similarity=0.247 Sum_probs=91.9
Q ss_pred CcchHHHHHHHHHhhCchhh-----hhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHH-HHHHhcccC
Q 001793 241 SHIDYHEVIYDVYRCSPQIL-----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVF-SEFLKRLTD 314 (1012)
Q Consensus 241 ~~~~~h~li~el~~~~P~lL-----~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~-~~fL~R~~D 314 (1012)
....+|+.+..+-...|.-. ...+|.|=+-|.-.|..+|..+++++-..+...+ .+.+.|-+++ ..+|.=..|
T Consensus 883 ~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~ 961 (1030)
T KOG1967|consen 883 QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSD 961 (1030)
T ss_pred chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCC
Confidence 33446777777777777521 2355667788999999999999999998887755 5777775554 466655555
Q ss_pred CC---hhHHHHHHHHhHHHHhcCCCC---CChhHHHHHHHHHcCCchhHHHHHHHHH
Q 001793 315 RI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1012)
Q Consensus 315 ~s---~~VR~~~v~~~~~il~~~~~~---~~~~~i~~~l~~rL~D~DekVR~aaV~~ 365 (1012)
-+ ..||...+++...+..--|.. ....+++.++.+.|-|+--.||.+||.+
T Consensus 962 ~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 962 NDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred CCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 55 789999999987755533432 2346899999999999999999998876
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=97 Score=38.84 Aligned_cols=253 Identities=15% Similarity=0.221 Sum_probs=138.3
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhc---CCCCCCCchHHHHHHHHHHHhccCCCCCCCCchhhHH-------------HHH
Q 001793 64 LLKHQDKDVKLLVATCICEITRIT---APEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV-------------VIL 127 (1012)
Q Consensus 64 lL~h~d~~Vr~~~acCl~dilRi~---APdaPy~~~~lkdIf~l~~~~~~~L~d~~~~~~~~~~-------------~lL 127 (1012)
=|+|...=||-..-||+-.|++.+ -|||| .-|..++.+.. ||+ +-...| |++
T Consensus 142 cleHrhsYVRrNAilaifsIyk~~~~L~pDap------eLi~~fL~~e~----Dps--CkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 142 CLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP------ELIESFLLTEQ----DPS--CKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HHhCcchhhhhhhheeehhHHhhhhhhcCChH------HHHHHHHHhcc----Cch--hHHHHHHHHHhcCHHHHHHHHH
Confidence 468999999999999999999995 48888 33445544432 111 122223 333
Q ss_pred HHHHhhhhhhhhccCCccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCChHHHH
Q 001793 128 ETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1012)
Q Consensus 128 e~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~~~~~~a~~ 207 (1012)
+++..|-++.-. .+-+|.++.+. ++...|..=-.++.-|+..+-.+++.| ++ +
T Consensus 210 ~~idqi~~~~~~----LqlViVE~Irk----v~~~~p~~~~~~i~~i~~lL~stssaV-------~f------------E 262 (948)
T KOG1058|consen 210 SNIDQIPSFNDS----LQLVIVELIRK----VCLANPAEKARYIRCIYNLLSSTSSAV-------IF------------E 262 (948)
T ss_pred hhHhhccCccHH----HHHHHHHHHHH----HHhcCHHHhhHHHHHHHHHHhcCCchh-------hh------------h
Confidence 333333322110 12233333322 222334333333333443333333222 12 1
Q ss_pred HHHHHHH--HhhhhhHHHHHHHHHHhhcCCCCCCCCcch--HHHHHHHHHhhC----chhhhhhhhhhhccccCCChHHH
Q 001793 208 LAMNVIE--QCAGKLEAGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCS----PQILSGVVPYLTGELLTDQLDTR 279 (1012)
Q Consensus 208 la~~v~~--~~~~~l~~~i~~~f~~~l~~~~~~~~~~~~--~h~li~el~~~~----P~lL~~Vip~Le~eL~se~~~~R 279 (1012)
-|..++. .....+.+....|+.=+.... +...+ ..+.+.++.... -++...|++. |.+.|-++|
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kes----dnnvklIvldrl~~l~~~~~~il~~l~mDvLrv----Lss~dldvr 334 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKES----DNNVKLIVLDRLSELKALHEKILQGLIMDVLRV----LSSPDLDVR 334 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhcc----CcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHH----cCcccccHH
Confidence 1111111 112234444444443222221 11111 234445554333 3444445544 668999999
Q ss_pred HHHHHHHHHhhcCCCCChhhhcHHHHH-HHH---hcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCch
Q 001793 280 LKAVGLVGDLFAVPGSANNEQFHSVFS-EFL---KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 355 (1012)
Q Consensus 280 ~~At~~lg~m~s~~~~~~~~~~~~~~~-~fL---~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~D 355 (1012)
.++....-++.++.... + --..++ ++. +--+|..-+-|...++....+-.+-|+ .+..++..|.+-+-|+.
T Consensus 335 ~Ktldi~ldLvssrNve--d-iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N 409 (948)
T KOG1058|consen 335 SKTLDIALDLVSSRNVE--D-IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSN 409 (948)
T ss_pred HHHHHHHHhhhhhccHH--H-HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCC
Confidence 99999999998876421 1 011111 111 113566677899999999999888886 46789999999999999
Q ss_pred hHHHHHHHHHHHH
Q 001793 356 ENVRKQVVAVICD 368 (1012)
Q Consensus 356 ekVR~aaV~~i~~ 368 (1012)
++-=.+++.-+.+
T Consensus 410 ~~aas~vl~FvrE 422 (948)
T KOG1058|consen 410 EAAASDVLMFVRE 422 (948)
T ss_pred HHHHHHHHHHHHH
Confidence 9988887777665
No 87
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=76.41 E-value=1.3e+02 Score=33.37 Aligned_cols=211 Identities=17% Similarity=0.171 Sum_probs=109.4
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCC
Q 001793 345 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1012)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~~-~~v~~~----~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~ 419 (1012)
+.|...|.|.|+.+|..++..++.+...-. ..++.+ ++....+|+.|.. .|.- |+.++..+.+...
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~~~------- 72 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKMKN------- 72 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhCcC-------
Confidence 467889999999999999999987665433 234442 2467788887663 3433 3788877775320
Q ss_pred cchhhcccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 001793 420 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQR 499 (1012)
Q Consensus 420 ~~~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~l~~l~~~lD~~~~ka~~~il~~k~~l~~~~~~ 499 (1012)
+|.... ...++.+ ++..-+...+.+.|...+--+-.-++.. ..++ +..-..-+..
T Consensus 73 --------~~~~~~---------~~i~~~l-~~~~~~q~~~q~~R~~~~~ll~~l~~~~-~~~l------~~~~~~fv~~ 127 (262)
T PF14500_consen 73 --------FSPESA---------VKILRSL-FQNVDVQSLPQSTRYAVYQLLDSLLENH-REAL------QSMGDDFVYG 127 (262)
T ss_pred --------CChhhH---------HHHHHHH-HHhCChhhhhHHHHHHHHHHHHHHHHHh-HHHH------HhchhHHHHH
Confidence 111110 0123333 3333344455566654332222222221 1222 1111234455
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHh---------hccH------HHHHHHHHHhccCCC
Q 001793 500 YLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQ---------LKDA------NVWKILMNLLDSNTS 564 (1012)
Q Consensus 500 ~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~~---------l~D~------r~~~ll~~~~~~~~~ 564 (1012)
|++.+ .|+.+|.----+-+.+..+.+.|+-+.-+++-++.++- -||+ .+-..|+.|+.....
T Consensus 128 ~i~~~---~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~ 204 (262)
T PF14500_consen 128 FIQLI---DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL 204 (262)
T ss_pred HHHHh---ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh
Confidence 55554 34445655555555566666777754444444444432 1343 455566666665555
Q ss_pred HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHH
Q 001793 565 FDQAFTGRDDLLKILGAKHR--LYDFLSTLSM 594 (1012)
Q Consensus 565 ~~~~~~a~~ellkkl~~~~~--~~~~~~~Ll~ 594 (1012)
|.. -+.--++.||.+.++ =.|.+++|..
T Consensus 205 fa~--~~~p~LleKL~s~~~~~K~D~L~tL~~ 234 (262)
T PF14500_consen 205 FAP--FAFPLLLEKLDSTSPSVKLDSLQTLKA 234 (262)
T ss_pred hHH--HHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 532 255666666665533 2344554443
No 88
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=75.37 E-value=1.6e+02 Score=33.77 Aligned_cols=203 Identities=13% Similarity=0.110 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccc-ccccHHHHHHHHHhhcCCCCh--HHH--HHHHHHH-------H
Q 001793 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR--RLAMNVI-------E 214 (1012)
Q Consensus 147 li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~-~~v~~~~ld~il~~~~~~~~~--~a~--~la~~v~-------~ 214 (1012)
+-..+-+.+..++..+..+.....+.+.|..-..-. ..+|.++++.+-.-+...+.. -+| .++..+- .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444445555555556656666777777777655554 789999999988877554432 222 2222222 2
Q ss_pred HhhhhhHHHHHHHHHHhhcCCCCC--CCCcchHHHHHH--------------HHH----hhCchhhhhhhhhhhccccCC
Q 001793 215 QCAGKLEAGIKQFLVSSMSGDSRP--GHSHIDYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 274 (1012)
Q Consensus 215 ~~~~~l~~~i~~~f~~~l~~~~~~--~~~~~~~h~li~--------------el~----~~~P~lL~~Vip~Le~eL~se 274 (1012)
.....+-|.+-+.+.++....-.. .....-++-++. ..| .--|++|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 223345555555566655442111 111112222222 011 112333333 3445554332
Q ss_pred ChHHHHHHHHHHHHhhcCCCCChhhh-cHHHHHHHHhcccCC--ChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHc
Q 001793 275 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1012)
Q Consensus 275 ~~~~R~~At~~lg~m~s~~~~~~~~~-~~~~~~~fL~R~~D~--s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL 351 (1012)
++ =.-.++.+-.++.+........ .....++|+-=.... +++||...++..+.++..+|.. ....++.++...+
T Consensus 177 ~d--~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 ED--LCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hH--HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 22 2345555555555443222111 133444666666666 6777777777777777766642 2345556666555
Q ss_pred CCc
Q 001793 352 LDF 354 (1012)
Q Consensus 352 ~D~ 354 (1012)
.+.
T Consensus 254 ~~~ 256 (339)
T PF12074_consen 254 SSS 256 (339)
T ss_pred Hhc
Confidence 443
No 89
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.84 E-value=1.9e+02 Score=35.60 Aligned_cols=259 Identities=17% Similarity=0.212 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcc-----cccccHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHhh-
Q 001793 146 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEE-----SEDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA- 217 (1012)
Q Consensus 146 ~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E-----~~~v~~~~ld~il~~~~~~~~~--~a~~la~~v~~~~~- 217 (1012)
+.+.+.|.-+.+.++. |-.+.....+.-|..+|-- ...-..+...+++..|...+.+ .--.+...+|.+..
T Consensus 395 e~fd~vl~pLw~g~~~-hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~ 473 (975)
T COG5181 395 EQFDEVLCPLWEGASQ-HRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGT 473 (975)
T ss_pred HHHHHHHHHHHHHHHh-cCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCC
Confidence 3455555555555543 4455555666666666533 2245667788888888543221 23344445554332
Q ss_pred ---hhhHHHH-HHHHHHhh----cCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHh
Q 001793 218 ---GKLEAGI-KQFLVSSM----SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDL 289 (1012)
Q Consensus 218 ---~~l~~~i-~~~f~~~l----~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m 289 (1012)
.++...| ..||+-.. .+| .++....-.-..+..=.--+|.+.--++ ..++.+-++.|..++.++.+.
T Consensus 474 ~tp~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil----~~~~De~ep~r~m~a~~vsri 548 (975)
T COG5181 474 DTPWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKIL----EYYSDEPEPYRKMNAGLVSRI 548 (975)
T ss_pred CCHHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHH----hhccCCcchhhhhhhHHHHHH
Confidence 2333333 23443222 122 1222222223333333334555555444 445668899999999999999
Q ss_pred hcCCCCC-h----------------------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHh
Q 001793 290 FAVPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHV 327 (1012)
Q Consensus 290 ~s~~~~~-~----------------------------------------~~~~-~~~~~~fL~R~~D~s~~VR~~~v~~~ 327 (1012)
|+.-|.. | .+.| +.+-..-|++.+-+.|.||+.-.+.+
T Consensus 549 ~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~ 628 (975)
T COG5181 549 FSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLM 628 (975)
T ss_pred HHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 9876421 1 1122 67788899999999999999988887
Q ss_pred HHHHh--cCC-CCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh-hhcCCCCH---HHHHHHHHhhccCChhHHHHH
Q 001793 328 KSCLL--TDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPV---ETVKLVAERLRDKSVLVKRYT 400 (1012)
Q Consensus 328 ~~il~--~~~-~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~-~~~~~v~~---~~l~~l~eR~rDKk~~VR~~A 400 (1012)
+.+.. .+. +..+..-+-..|-+-|-.-+..|=-.+++|+|.+-. ..++.... .++-++..-+|.|+.+|-...
T Consensus 629 ~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nt 708 (975)
T COG5181 629 GSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANT 708 (975)
T ss_pred HHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhH
Confidence 76432 222 111111222345566677788888888899887654 45554422 345677788899999998888
Q ss_pred HHHHHHHHHH
Q 001793 401 MERLADIFRG 410 (1012)
Q Consensus 401 i~~L~~lY~~ 410 (1012)
+..+|.+-..
T Consensus 709 i~lvg~I~~~ 718 (975)
T COG5181 709 IALVGTICMN 718 (975)
T ss_pred HHHHHHHHhc
Confidence 8888887665
No 90
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=74.61 E-value=1.4e+02 Score=38.62 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=62.9
Q ss_pred HHHHHHHHHcC-CchhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCC
Q 001793 342 QILTALCDRLL-DFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1012)
Q Consensus 342 ~i~~~l~~rL~-D~DekVR~aaV~~i~~la~-~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~ 419 (1012)
.++..+.+|+. |.-+.||.+++........ .+....-++.|+.|-+.+||.-.+||+.+...|+++-..-
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~-------- 647 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRD-------- 647 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhC--------
Confidence 44456777777 8889999999888765443 2233333445889999999999999999999999987752
Q ss_pred cchhhcccchHHHHhhh--hccCCC
Q 001793 420 INQNEFEWIPGKILRCL--YDKDFG 442 (1012)
Q Consensus 420 ~~~~~~~wIP~~iL~~~--y~~d~~ 442 (1012)
.++-.|-++-|+.. -.+|-+
T Consensus 648 ---pr~~~~~~~wl~~li~~~~d~e 669 (1529)
T KOG0413|consen 648 ---PRLFSLSSKWLHTLISMLNDTE 669 (1529)
T ss_pred ---chhhhhhHHHHHHHHHHHhccH
Confidence 23335556656543 245544
No 91
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.21 E-value=2.4e+02 Score=35.38 Aligned_cols=215 Identities=20% Similarity=0.204 Sum_probs=132.2
Q ss_pred cCC-ccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhc-C--CCChHHHHHHHHHHHHh
Q 001793 141 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG-R--NKNDTARRLAMNVIEQC 216 (1012)
Q Consensus 141 dl~-~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~-~--~~~~~a~~la~~v~~~~ 216 (1012)
+++ .+|++..+|.+++... +...++|+.-.+.|+.-+.+|-..||.+|-+.|...+. + .+.+..+.=|.-.+
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aL--- 150 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLAL--- 150 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHH---
Confidence 444 4779999999888754 45678899999999999999999999999998876542 1 11111111111100
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCC
Q 001793 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1012)
Q Consensus 217 ~~~l~~~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~ 296 (1012)
.+|.+ + +.+....+-.++..+-+..| +..+|..|.-- ++..
T Consensus 151 ---------srlQ~----d--~~dee~~v~n~l~~liqnDp-----------------S~EVRRaaLsn----I~vd--- 191 (892)
T KOG2025|consen 151 ---------SRLQG----D--PKDEECPVVNLLKDLIQNDP-----------------SDEVRRAALSN----ISVD--- 191 (892)
T ss_pred ---------HHHhc----C--CCCCcccHHHHHHHHHhcCC-----------------cHHHHHHHHHh----hccC---
Confidence 11221 1 22333444555554444443 57788877542 2221
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001793 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1012)
Q Consensus 297 ~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~ 376 (1012)
++|+-.-++|..|.+..+|.-.-+.+-.=+ +--...+..-+--++.-|.|-++.||.|.+.++..-....
T Consensus 192 -----nsTlp~IveRarDV~~anRrlvY~r~lpki--d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~--- 261 (892)
T KOG2025|consen 192 -----NSTLPCIVERARDVSGANRRLVYERCLPKI--DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRF--- 261 (892)
T ss_pred -----cccchhHHHHhhhhhHHHHHHHHHHhhhhh--hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh---
Confidence 346667899999999999988776653322 1111112233345666799999999999999987543332
Q ss_pred CCHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHH
Q 001793 377 IPVETVKLVAERLRDKS-VLVKRYTMERLADIFR 409 (1012)
Q Consensus 377 v~~~~l~~l~eR~rDKk-~~VR~~Ai~~L~~lY~ 409 (1012)
....+++.+ +|+-=-+ .+|+..|++.|-+.-+
T Consensus 262 ~dgni~ElL-~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 262 SDGNILELL-ERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred ccccHHHHH-HHhccccchHHHHHHHHHHHHHHH
Confidence 233344333 5553333 4899999998877433
No 92
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=74.11 E-value=11 Score=34.88 Aligned_cols=85 Identities=18% Similarity=0.212 Sum_probs=72.4
Q ss_pred hhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHH
Q 001793 267 LTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA 346 (1012)
Q Consensus 267 Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~ 346 (1012)
.-.+|+++.+++|-.+..++++++..+. .-...-+.+..-|+.=..|.++=|=...++....+...+|+ ++++.
T Consensus 8 al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~ 81 (92)
T PF10363_consen 8 ALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPI 81 (92)
T ss_pred HHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHH
Confidence 3456778899999999999999999876 34556789999999999999999999999999988877773 68889
Q ss_pred HHHHcCCchhH
Q 001793 347 LCDRLLDFDEN 357 (1012)
Q Consensus 347 l~~rL~D~Dek 357 (1012)
|.+...|.+++
T Consensus 82 L~~~y~~~~~~ 92 (92)
T PF10363_consen 82 LLDEYADPSEQ 92 (92)
T ss_pred HHHHHhCcccC
Confidence 98888887763
No 93
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.73 E-value=7.2 Score=46.80 Aligned_cols=141 Identities=21% Similarity=0.191 Sum_probs=81.5
Q ss_pred hhhhhhhccccCCChHHHHHHHHHHHHhhcCCC--CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh-----cC
Q 001793 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-----TD 334 (1012)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~--~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~-----~~ 334 (1012)
+.+|.+-.-|.+.++++|-.|+-.||.+.++.. -+++-.+ ..-...|.=.+..++ ..++..+...|. .+
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 456667777889999999999999999998742 0111121 122222333333222 344333333332 22
Q ss_pred CC--CCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 001793 335 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1012)
Q Consensus 335 ~~--~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v----~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1012)
|+ .+.+..++++|...++.+|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+--|++.+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 44 24557899999999999999999999999885553322221 11122234444444445555444444443
No 94
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=72.02 E-value=5.3 Score=48.07 Aligned_cols=104 Identities=16% Similarity=0.145 Sum_probs=70.3
Q ss_pred HHHHH-HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 001793 302 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1012)
Q Consensus 302 ~~~~~-~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~ 380 (1012)
.++.. .|..|..|+++.||+.|+...+..+.+-|+--.-...+++..=-|-|..+.||+.+++.+--+....++. +
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~---d 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHT---D 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcc---h
Confidence 44444 7999999999999999999998877766641101123455566699999999999999987665544331 1
Q ss_pred HHHHHHHhh---------ccCChhHHHHHHHHHHHHHH
Q 001793 381 TVKLVAERL---------RDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 381 ~l~~l~eR~---------rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
.++.+.+|- +|=.. ||--+++.|..+=-
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 333333443 34444 88888887776544
No 95
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=71.92 E-value=13 Score=47.09 Aligned_cols=135 Identities=17% Similarity=0.234 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcC
Q 001793 274 DQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1012)
Q Consensus 274 e~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~ 352 (1012)
|--+-|..|...+|.+...-..+ .-.+.++.+..+ .+|..|.||..+.+.++.+-..-++....+++...+..-..
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 34447888888888888754322 334555555555 58999999999999988766544444445678889999999
Q ss_pred CchhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 353 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 353 D~DekVR~aaV~~i~~la~-~~~~-~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
|-.+-||.+|+.+...+.. .+-. .+-.....++..-.-|+.+.||--.+.....+|...
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~ 347 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAV 347 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHh
Confidence 9999999999999887654 2222 344455677888899999999999999999999875
No 96
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.66 E-value=2.1e+02 Score=33.49 Aligned_cols=232 Identities=19% Similarity=0.202 Sum_probs=122.1
Q ss_pred hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh-cCCCC
Q 001793 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1012)
Q Consensus 300 ~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~-~~~v~ 378 (1012)
+|-+-|..-|+-..--+-+=|.+ .+++|.+...-|+. +.+-+++-.+..-|-|-.||.+|++.+-.++.-+ +.-|.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 66677777666665555555543 57777777666763 4577888888889999999999887765444432 22222
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHHhhhhccCCCchhHHHHhhhcCCCCC
Q 001793 379 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 458 (1012)
Q Consensus 379 ~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~ 458 (1012)
+.+.+.| . =..|+.+|.+.-. .+...-...+..|-++|+-+- .| ++ +
T Consensus 99 d~l~qLL-n-------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl~~l~---------~e-~L-------~ 145 (460)
T KOG2213|consen 99 DVLVQLL-N-------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKLITLK---------GE-VL-------T 145 (460)
T ss_pred HHHHHHH-H-------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHhhccc---------HH-Hh-------h
Confidence 2221111 1 1234555554311 000011122334444443210 00 00 0
Q ss_pred CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHHHHHHHHh
Q 001793 459 FSVKDR-VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKILFCFRVMS 527 (1012)
Q Consensus 459 ~~~~~R-~~~l~~l~~~lD~~~~ka~~~il~~k~~l~-----~~~~~~l~~~~~~~~~-----~~~~~~~kl~~~i~~Ls 527 (1012)
-+.+.- ++-.-..+.+.+..++.+|..+++.-+.++ ..++++++--+...+- ..++.-.++-++...-.
T Consensus 146 kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~Av 225 (460)
T KOG2213|consen 146 KEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAV 225 (460)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhh
Confidence 011111 222224566777778888888887766655 3455554443332221 23455556666655555
Q ss_pred hhcCCchhHHHHHH---------HHHhhccHHHHHHHHHH--hccCCCHHH
Q 001793 528 RSFAEPAKAEENFL---------ILDQLKDANVWKILMNL--LDSNTSFDQ 567 (1012)
Q Consensus 528 ~~fpd~~ka~~~l~---------kf~~l~D~r~~~ll~~~--~~~~~~~~~ 567 (1012)
-+|.-..+....+. .|.++-+.|=..+||.+ |++.|+-+.
T Consensus 226 PfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~ 276 (460)
T KOG2213|consen 226 PFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQA 276 (460)
T ss_pred hhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHH
Confidence 66655555544433 35666788888999988 444444433
No 97
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=71.11 E-value=2.4e+02 Score=33.99 Aligned_cols=166 Identities=11% Similarity=0.169 Sum_probs=98.8
Q ss_pred CCCchhhHHHHHHHHHhhhhhhhhccCCccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 001793 116 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 195 (1012)
Q Consensus 116 ~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~ 195 (1012)
+...+.+.+.++.++-+..+..+ .++-+..+-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 44566777777777666544322 2455555555555554443344444555777888877 67899999988776
Q ss_pred hhcC-----CCChHHHHHHHHHHHHh-hhhhHHHHHHHHHHhhcCCCCCCCCc---ch--HHHHHHHHHhh----Cchh-
Q 001793 196 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHSH---ID--YHEVIYDVYRC----SPQI- 259 (1012)
Q Consensus 196 ~~~~-----~~~~~a~~la~~v~~~~-~~~l~~~i~~~f~~~l~~~~~~~~~~---~~--~h~li~el~~~----~P~l- 259 (1012)
-+-. +-.+++++..+++|... ...+-+.++.++ .+.+...... .+ ++-+=.-+|+. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 5521 22348899999998642 333444444443 2211111111 11 12222334666 3333
Q ss_pred --hhhhhhhhhccccCCChHHHHHHHHHHHHhhc
Q 001793 260 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1012)
Q Consensus 260 --L~~Vip~Le~eL~se~~~~R~~At~~lg~m~s 291 (1012)
...|+|.+..=|++.++-+=...+.++-+++.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33599999999998888777788888888884
No 98
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.80 E-value=9.3 Score=46.99 Aligned_cols=112 Identities=18% Similarity=0.201 Sum_probs=80.7
Q ss_pred CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 001793 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1012)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 335 (1012)
.-+++.-..-++.-.|.+.|+-.=-.|...|+. |..|+ ++ +++...-+.=.+-.-|-||...|-..-.+...-|
T Consensus 103 ~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~-fvTpd--LA---RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP 176 (877)
T KOG1059|consen 103 DTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSC-IVTPD--LA---RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP 176 (877)
T ss_pred CccHHHHHHHHHHHHhccCccchhhheeccccc-ccCch--hh---HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh
Confidence 334444445566777777777776777777763 44443 45 3344444444456678899999988888777777
Q ss_pred CCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC
Q 001793 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1012)
Q Consensus 336 ~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~ 375 (1012)
+. .+.-.+.|.++|-|||..|--|||.+||++|..++.
T Consensus 177 eA--lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 177 EA--LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred Hh--HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 52 356778999999999999999999999999998865
No 99
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.14 E-value=62 Score=40.28 Aligned_cols=186 Identities=16% Similarity=0.167 Sum_probs=101.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHhhhhhHHH-HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhh
Q 001793 190 LVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLT 268 (1012)
Q Consensus 190 ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~-i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le 268 (1012)
..+++..+....+++|..+..+.|.+ .++... ..+++..+.. -+-+-.+++|..+.+.++
T Consensus 381 r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~~l~~-----------------~~~~Pt~e~l~~l~~L~~ 441 (618)
T PF01347_consen 381 RKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLASLPF-----------------HVRRPTEELLKELFELAK 441 (618)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHHHHHH-----------------T-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHh-----------------hcCCCCHHHHHHHHHHHh
Confidence 33444444444455677777777766 333222 2233332211 111234455555555555
Q ss_pred ccccCCChHHHHHHHHHHHHhhcC----C---------CCChhhhcHHHHHHHHhc-ccCCChhHHHHHHHHhHHHHhcC
Q 001793 269 GELLTDQLDTRLKAVGLVGDLFAV----P---------GSANNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTD 334 (1012)
Q Consensus 269 ~eL~se~~~~R~~At~~lg~m~s~----~---------~~~~~~~~~~~~~~fL~R-~~D~s~~VR~~~v~~~~~il~~~ 334 (1012)
..-...+..+|..|.-.+|.|... . .......+-+-+..-|+. ....+..-++.++++.+++ .+
T Consensus 442 ~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~ 519 (618)
T PF01347_consen 442 SPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GH 519 (618)
T ss_dssp -HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-
T ss_pred CccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CC
Confidence 554456778888888888887742 1 123445555555555552 3456778999999999874 23
Q ss_pred CCCCChhHHHHHHHHHcCCc---hhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 001793 335 PSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 406 (1012)
Q Consensus 335 ~~~~~~~~i~~~l~~rL~D~---DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk--~~VR~~Ai~~L~~ 406 (1012)
| ++++.|...+.+. ...||.+||.++..++... |..+...+..-..|.. ++||-.|...|.+
T Consensus 520 ~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 520 P------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred c------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3 4666666666666 8999999999877554333 4444444445444443 6899988877765
No 100
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=69.73 E-value=1.8e+02 Score=32.10 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=69.0
Q ss_pred hhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCC---ChhhhcHHHHHHHHhcccCCChhHHHHH-HHHhHHHHhc
Q 001793 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS---ANNEQFHSVFSEFLKRLTDRIVAVRMSV-LEHVKSCLLT 333 (1012)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~---~~~~~~~~~~~~fL~R~~D~s~~VR~~~-v~~~~~il~~ 333 (1012)
.++.+.+|.+-.-|.+.++..|..+.+++..|=..|.. -+..+=++-|-.++.+..+.+.-+|+-+ ++-....+..
T Consensus 130 ~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 130 HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKK 209 (254)
T ss_pred hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence 44556677776678889999999999999877666521 1233446677778888777777777543 3333333332
Q ss_pred CC------CC---------CChhHHHHHHHHHcCCchhHHHHHHH
Q 001793 334 DP------SR---------ADAPQILTALCDRLLDFDENVRKQVV 363 (1012)
Q Consensus 334 ~~------~~---------~~~~~i~~~l~~rL~D~DekVR~aaV 363 (1012)
.. .. .+.+.+.+.|......+|+.||..||
T Consensus 210 ~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 210 EAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred ccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhcC
Confidence 21 00 23345667777777889999998764
No 101
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.52 E-value=50 Score=34.63 Aligned_cols=131 Identities=17% Similarity=0.158 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhhcC-CCCCh---------------hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC------
Q 001793 277 DTRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------ 334 (1012)
Q Consensus 277 ~~R~~At~~lg~m~s~-~~~~~---------------~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~------ 334 (1012)
.+|..|..+++.+... ++-.+ ....++++..-+ .|.++.||...++....+|...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 3799999999999877 32111 122344444444 5999999999999998888532
Q ss_pred ------CCC---CC---hhHHHHHHHHHc-----CCchhHHHHHHHHHHHHhhh-hhcCCCCHHH----HHHHHHhhccC
Q 001793 335 ------PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVAC-HALNSIPVET----VKLVAERLRDK 392 (1012)
Q Consensus 335 ------~~~---~~---~~~i~~~l~~rL-----~D~DekVR~aaV~~i~~la~-~~~~~v~~~~----l~~l~eR~rDK 392 (1012)
+.+ .. ...++..+...| ...+..+=.+.+|++..+.. ..++.++.++ +..+..+++++
T Consensus 78 Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 78 AEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcC
Confidence 110 00 123344444332 45566777788888887765 4456677765 45788899999
Q ss_pred ChhHHHHHHHHHHHHHHH
Q 001793 393 SVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 393 k~~VR~~Ai~~L~~lY~~ 410 (1012)
.+.||..+...++.+-..
T Consensus 158 d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 158 DPNVRVAALSCLGALLSV 175 (182)
T ss_pred CCcHHHHHHHHHHHHHcC
Confidence 999999999999988764
No 102
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=69.22 E-value=15 Score=46.51 Aligned_cols=137 Identities=12% Similarity=0.051 Sum_probs=97.1
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHH
Q 001793 269 GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 348 (1012)
Q Consensus 269 ~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~ 348 (1012)
.++..--..+|..++-|+|+|.-+++ .+++.|-+.+..=|....| +.||--.|=+..+|-.. .+....--++.+.
T Consensus 938 v~g~~~~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~--YTam~d~YiP~I~ 1012 (1529)
T KOG0413|consen 938 VEGAMFSDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSS--YTAMTDRYIPMIA 1012 (1529)
T ss_pred ccccccchHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHH--HHHHHHHhhHHHH
Confidence 33444456789999999999998876 7899888887777765544 56775554444443221 1111123467888
Q ss_pred HHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 349 DRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 349 ~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
.+|.||++-||.+++.-+..+-.+.+-.-.++++--+---.-|-+..||..|=-.+|.+-..
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999988887777667777764444566799999888776666666554
No 103
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=68.29 E-value=37 Score=34.82 Aligned_cols=137 Identities=15% Similarity=0.179 Sum_probs=87.1
Q ss_pred cHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhC-CcCccccH----HHHHHHHhhccc-cchHhHHHHHHHhccc
Q 001793 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGTE----EELVNLLKEENE-IIKEGILHVLAKAGGT 675 (1012)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~-P~lf~~~~----~~L~~~L~~~~~-~~~~~~L~~L~~~~k~ 675 (1012)
+++.+..+..++..--.+++....-.|..|+..+...+ |+.|..|- +.|...|+..++ .+.+.++.+|..+-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 77888888887754323333333456789999999998 99997663 666777776443 3456666666654322
Q ss_pred hHhhhhhccchHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcc
Q 001793 676 IREQLAATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 754 (1012)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~la~~-Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~L~sL~~ia~~~p 754 (1012)
.... +. +.-+ +||.-.|....+|....+ ..-..+.|.+|+.+-+.+|
T Consensus 99 ~~~~-p~-----------l~Rei~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGK-PT-----------LTREIATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCC-Cc-----------hHHHHhhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCC
Confidence 2111 11 1111 457766666555553322 0123456888999999999
Q ss_pred cccccchHHHHHHHHH
Q 001793 755 PVFETRESEIEEFIKS 770 (1012)
Q Consensus 755 ~~f~~~~~~I~~fiik 770 (1012)
..|..+...|..+++.
T Consensus 147 tt~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 147 TTFRPFANKIESALLS 162 (165)
T ss_pred ccccchHHHHHHHHHH
Confidence 9999999899888764
No 104
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=68.27 E-value=20 Score=44.30 Aligned_cols=101 Identities=17% Similarity=0.162 Sum_probs=79.2
Q ss_pred HhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh-hcCCCCHHHHHHHHH
Q 001793 309 LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH-ALNSIPVETVKLVAE 387 (1012)
Q Consensus 309 L~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~-~~~~v~~~~l~~l~e 387 (1012)
++=|.=.+..||...+++..+.+-.-+......+|.+.+..=+.|+++.+|..+|+++..++.. +-..+..|+++.++.
T Consensus 336 ~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar 415 (690)
T KOG1243|consen 336 LKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLAR 415 (690)
T ss_pred HHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHh
Confidence 4445666789999999999886642221112347889999999999999999999999998863 455789999999988
Q ss_pred hhccCChhHHHHHHHHHHHHHH
Q 001793 388 RLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 388 R~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
---|-...+|-..-..||++=-
T Consensus 416 ~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 416 LQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hCccccCcccccceeeeccccc
Confidence 8778888898888877777633
No 105
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.77 E-value=2e+02 Score=36.56 Aligned_cols=116 Identities=17% Similarity=0.311 Sum_probs=68.3
Q ss_pred CCCCCCchhhHHHHHHHHHhhhhhhhhccCC--c-cHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhccccc-ccHH
Q 001793 113 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE--C-DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 188 (1012)
Q Consensus 113 ~d~~~~~~~~~~~lLe~la~vks~vl~~dl~--~-~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~-v~~~ 188 (1012)
++|++|-| ++|+.|+++-+ +.-.++-+ + ..+...||=.|-.+-+.| =....++...+|+.+++-+.. +|.+
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 56677744 47899998763 33345543 1 346666664444443322 245677888999999998765 8887
Q ss_pred HHHHHHHhhcCC---CC---hHHHHHHHHHHHHhhhhhH-----HHHHHHHHHhhc
Q 001793 189 LLVILLSALGRN---KN---DTARRLAMNVIEQCAGKLE-----AGIKQFLVSSMS 233 (1012)
Q Consensus 189 ~ld~il~~~~~~---~~---~~a~~la~~v~~~~~~~l~-----~~i~~~f~~~l~ 233 (1012)
...++.--+.++ ++ .+.-.+-...+.+.+.... .+|-.+|..++.
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLia 733 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIA 733 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhc
Confidence 655443333322 12 2556777777776654433 345556666554
No 106
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.73 E-value=4.1e+02 Score=35.34 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhhhhhhhhccCC-ccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcC
Q 001793 121 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1012)
Q Consensus 121 ~~~~~lLe~la~vks~vl~~dl~-~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~ 199 (1012)
..-.+.+.-+.+-..+.-..|.+ +=.=+..+|..||.+- .+..+.+.....+++..|+.++-.+-..+-...+..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 44456666666665555556655 4445667788888854 334467888899999999999888666665555555544
Q ss_pred CCChHHHHHH----HHHHHHhhhhhHHHHHHHHHHhhc-CCCCCCCCcchH-HHHHHHHHhhCchhhhhhhhh
Q 001793 200 NKNDTARRLA----MNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDY-HEVIYDVYRCSPQILSGVVPY 266 (1012)
Q Consensus 200 ~~~~~a~~la----~~v~~~~~~~l~~~i~~~f~~~l~-~~~~~~~~~~~~-h~li~el~~~~P~lL~~Vip~ 266 (1012)
-+..++|.++ ..+|++|...-.|++..-+..+-. ..+......... +-+...+-..=|+.+++++|.
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpL 433 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPL 433 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcch
Confidence 4444555444 455566666555555544443221 111112122233 445666777899999999995
No 107
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.05 E-value=70 Score=39.80 Aligned_cols=165 Identities=13% Similarity=0.138 Sum_probs=115.9
Q ss_pred hHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHH-------H--------
Q 001793 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE-------F-------- 308 (1012)
Q Consensus 244 ~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~-------f-------- 308 (1012)
++--++|.++---|+-|-...|-|-+.|..+|+.+-..||..+.++-....-++-.--|..|+- |
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 5777889999999999999999999999999999999999999998876544443333444432 1
Q ss_pred HhcccCCChhHHHHHHHHhHHHHhc----------------------CCCCCC-hhHHHHHHHHHcCCchhHHHHHHHHH
Q 001793 309 LKRLTDRIVAVRMSVLEHVKSCLLT----------------------DPSRAD-APQILTALCDRLLDFDENVRKQVVAV 365 (1012)
Q Consensus 309 L~R~~D~s~~VR~~~v~~~~~il~~----------------------~~~~~~-~~~i~~~l~~rL~D~DekVR~aaV~~ 365 (1012)
.+...=..|..+.+.++-.-+++.+ +|++.. ++-.+..|...+-|+|...+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 2344455666666655544433321 222211 22334677788899999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001793 366 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 366 i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
.+.++..++..|...- ..+..-+-||..+||-.|+..|--+-+
T Consensus 323 m~KI~ktHp~~Vqa~k-dlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAHK-DLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHHhH-HHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 9999999888775531 123455678999999999988755444
No 108
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=66.11 E-value=47 Score=43.52 Aligned_cols=157 Identities=17% Similarity=0.245 Sum_probs=107.2
Q ss_pred cchHHHHHHHHHhh--CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHH----hcc-cC
Q 001793 242 HIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----KRL-TD 314 (1012)
Q Consensus 242 ~~~~h~li~el~~~--~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL----~R~-~D 314 (1012)
.+++.+|+.++-++ .-..|-.|+|++-+-+.....++|..|.+||.++++--. ++....-.+|.++| +++ +|
T Consensus 440 K~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 440 KLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhHhhhcc
Confidence 34678899888877 456778899999999999999999999999999998642 33333334444443 332 45
Q ss_pred -CChhHHHHHHHHhHHHHh------------------cCCCC---------CChhHHH----HHHHHHcCCchhHHHHHH
Q 001793 315 -RIVAVRMSVLEHVKSCLL------------------TDPSR---------ADAPQIL----TALCDRLLDFDENVRKQV 362 (1012)
Q Consensus 315 -~s~~VR~~~v~~~~~il~------------------~~~~~---------~~~~~i~----~~l~~rL~D~DekVR~aa 362 (1012)
-...||+....+.+.+-. |.|.. .+...+. ..+...|.|++.-||.+-
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~L 598 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRAL 598 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 566789988877665332 11211 1222333 455567899999999999
Q ss_pred HHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHH
Q 001793 363 VAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRY 399 (1012)
Q Consensus 363 V~~i~~la~~~~~~v~~~-~l~~l~eR~rDKk~~VR~~ 399 (1012)
++.|+.+..+--..=+.+ +|..+.-=+-||.+..|..
T Consensus 599 le~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~a 636 (1431)
T KOG1240|consen 599 LESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGA 636 (1431)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHH
Confidence 999988876544433333 4566666777888877754
No 109
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.74 E-value=44 Score=40.89 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=16.3
Q ss_pred HHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhc
Q 001793 248 VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1012)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s 291 (1012)
+|..-|+.-|++--..|--+-+-...||+.+|..|++-|..+-.
T Consensus 45 ~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck 88 (556)
T PF05918_consen 45 FIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCK 88 (556)
T ss_dssp HHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--
T ss_pred HHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHH
Confidence 33334444444433333333333333444444444444444433
No 110
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=64.99 E-value=41 Score=40.91 Aligned_cols=131 Identities=17% Similarity=0.134 Sum_probs=92.9
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHH------hcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHH
Q 001793 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL------KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQIL 344 (1012)
Q Consensus 271 L~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL------~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~ 344 (1012)
...-++.+|..+..-+|.-.+- +|+.|..=+ .=..|.+..||...++-...+...+|..+-..+..
T Consensus 284 y~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~ 355 (740)
T COG5537 284 YIDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV 355 (740)
T ss_pred ccchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3455788999999999877753 344433211 12579999999999999999888878755445566
Q ss_pred HHHHHH-----cCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHhh
Q 001793 345 TALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 412 (1012)
Q Consensus 345 ~~l~~r-----L~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~---VR~~Ai~~L~~lY~~~~ 412 (1012)
+-+..| ..|.|= ||..+++..+.+ ..+-.++.+-+-.+.-.|-|=++. +|.|+...++++-....
T Consensus 356 eRFk~rILE~~r~D~d~-VRi~sik~l~~l--r~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 356 ERFKDRILEFLRTDSDC-VRICSIKSLCYL--RILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHHhhccch-hhHHHHHHHHHH--HHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 555444 578898 999999998854 444455666555566668888876 77788888887766644
No 111
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=64.42 E-value=25 Score=44.32 Aligned_cols=177 Identities=19% Similarity=0.170 Sum_probs=100.8
Q ss_pred cccHHHHHHHHhhccccchHhHHHHHHHhccchHhhhhh-ccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccch-
Q 001793 644 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA-TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKS- 721 (1012)
Q Consensus 644 ~~~~~~L~~~L~~~~~~~~~~~L~~L~~~~k~~~~~~~~-~~~~~~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~~- 721 (1012)
++-+.-|+++|..++....-.++..|.+.+-+ .++-.. ...+.++.|.++-..+++..-.-|.++|..++.+.+...
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 55667888998877665555566667666633 222111 234688899999999998888999999988877654321
Q ss_pred --HHHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhccccccCCCCCCCCC-----CChh
Q 001793 722 --LSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACWD-----DRSE 792 (1012)
Q Consensus 722 --~~~l~~~l~~~l~~~~~~~~~L~sL~~ia~~~--p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~-----~~~~ 792 (1012)
-.-++..++.-|.....-...+..|.+++... ...|.. ++.+.++++-++..+.... ..+.-|. .+..
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v-~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEV-QLELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCccc-cHHHHHHHHHHhcCHH
Confidence 01134455555543322233566677776653 244432 2456777777765432211 1111110 0111
Q ss_pred --hHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 001793 793 --LCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 831 (1012)
Q Consensus 793 --~~~~Ki~aLK~lvn~l~~~~~~~~~~~~~~~~~lL~~i~ 831 (1012)
...++--+|+.|+.+....++ ..++++++++-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 122344567777777654332 46789998875
No 112
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=63.43 E-value=2.5e+02 Score=31.88 Aligned_cols=65 Identities=22% Similarity=0.278 Sum_probs=39.7
Q ss_pred HHHHHHhhccccchHhHHHHHHHh--ccchHhhhhhccchHHHHHHHHhhcCChHHHHHHHHHHHhh
Q 001793 649 ELVNLLKEENEIIKEGILHVLAKA--GGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAI 713 (1012)
Q Consensus 649 ~L~~~L~~~~~~~~~~~L~~L~~~--~k~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~L~~~ 713 (1012)
+.++.+.+......+.+|..+.+. .+++.+.+......+...+.+....|++++...|.++++.+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll 113 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALL 113 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 444444544444556677766543 23334433332334677788888889988988998887544
No 113
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=63.37 E-value=92 Score=38.22 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCC
Q 001793 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1012)
Q Consensus 274 e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D 353 (1012)
.+.....+|-+.+.+-|.. |.+--...+++.+.=..|-++.||++.++..+.+-..+|+ ..+.|.+.|.+.|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 4567778888888888874 6666677888888888888888888888888887776664 35677777777666
Q ss_pred chhHHHHHHH
Q 001793 354 FDENVRKQVV 363 (1012)
Q Consensus 354 ~DekVR~aaV 363 (1012)
+||.+=..+|
T Consensus 107 tdd~~E~~~v 116 (556)
T PF05918_consen 107 TDDPVELDAV 116 (556)
T ss_dssp ---HHHHHHH
T ss_pred cccHHHHHHH
Confidence 5554444433
No 114
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=63.35 E-value=1e+02 Score=36.76 Aligned_cols=177 Identities=15% Similarity=0.243 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhcCCC-CCCCch---HHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccCCc---cHH
Q 001793 75 LVATCICEITRITAPE-APYSDD---VLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLEC---DEL 147 (1012)
Q Consensus 75 ~~acCl~dilRi~APd-aPy~~~---~lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~---~~l 147 (1012)
|+.-|+.-++=++.-+ .||.+. +|..|++.+. ++|+||.|. +|+-|+++..=- .+++-+. ..+
T Consensus 45 ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~lir--~~~~~~~~~v~~~ 114 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGALIR--FVCEADPEAVSQF 114 (435)
T ss_dssp HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHHHH--HS-GGGHH---HH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHHHH--hccCCChhHHHHH
Confidence 6667776666555544 577553 3333333332 357888765 678899986411 2333221 245
Q ss_pred HHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc--cccH---HHHHHHHHhhc--C-CCChHHHHHHHHHHHHhhhh
Q 001793 148 VNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALG--R-NKNDTARRLAMNVIEQCAGK 219 (1012)
Q Consensus 148 i~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~--~v~~---~~ld~il~~~~--~-~~~~~a~~la~~v~~~~~~~ 219 (1012)
-..+|-.|-.+...+ -.....+...||+.+++-.. .+|. +++..+++.-. . ++-.+.-++-...+.+.+..
T Consensus 115 E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~ 193 (435)
T PF03378_consen 115 EEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF 193 (435)
T ss_dssp HHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh
Confidence 555555555555433 23566777788888888765 5665 33334443221 1 11124456777888887765
Q ss_pred hH--H---HHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCch-hhhhhhhh
Q 001793 220 LE--A---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPY 266 (1012)
Q Consensus 220 l~--~---~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~~P~-lL~~Vip~ 266 (1012)
+. . .|-.-|.-.+.++. .....++|+..+...+|. .+.+.+|+
T Consensus 194 i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~ 242 (435)
T PF03378_consen 194 IVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ 242 (435)
T ss_dssp ----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred hcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 42 1 12223344554431 233467788888777776 45554443
No 115
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=63.18 E-value=79 Score=36.85 Aligned_cols=182 Identities=17% Similarity=0.288 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhccCCCCCCCCchhhHHH-HHHH----HH---hhhh-h----hhhccCCccHHHHHHHHHHHHhhc---
Q 001793 97 VLKDIFQLIVGTFSGLKDTGGPSFGRRVV-ILET----LA---KYRS-C----VVMLDLECDELVNEMYSTFFAVAS--- 160 (1012)
Q Consensus 97 ~lkdIf~l~~~~~~~L~d~~~~~~~~~~~-lLe~----la---~vks-~----vl~~dl~~~~li~~lF~~~~~~v~--- 160 (1012)
-++++|-+|+.-+..+....++|-.+... |.+. +. ..+. + ...++-| -..++.+.+++.++
T Consensus 140 ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~---~~~~l~~~il~~i~~~f 216 (373)
T PF14911_consen 140 AIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTP---RNEELRKFILQVIRSNF 216 (373)
T ss_pred HHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhh---hhhHHHHHHHHHHHHHH
Confidence 48999999999888888778887666532 1111 11 1111 0 1112222 12233333333332
Q ss_pred ----CCChhcHHHHHHHHHHHHhcc----cccccHHHHHHHH----Hhhc-CCCCh----HHHHHHHHHHHHhh------
Q 001793 161 ----DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALG-RNKND----TARRLAMNVIEQCA------ 217 (1012)
Q Consensus 161 ----~~~~~~v~~~m~~Il~~vI~E----~~~v~~~~ld~il----~~~~-~~~~~----~a~~la~~v~~~~~------ 217 (1012)
+.-|+.=......++.+++++ ....-...++.++ +.+. -+... -|-.+-..+++.|.
T Consensus 217 l~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~ 296 (373)
T PF14911_consen 217 LEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGE 296 (373)
T ss_pred hcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcch
Confidence 222333334444555555555 2222222233322 2221 11112 34444444445554
Q ss_pred --hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccC--------CChHHHHHHHHHHH
Q 001793 218 --GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLVG 287 (1012)
Q Consensus 218 --~~l~~~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~s--------e~~~~R~~At~~lg 287 (1012)
+.++..+++|..+-+. .....++.++..+....|+++.+.||+++.++.. +|...|..=-++++
T Consensus 297 ~~~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 297 PREQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred HHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 3455555555443211 1223689999999999999999999999998864 35666665555444
No 116
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=62.73 E-value=3.7e+02 Score=33.11 Aligned_cols=261 Identities=20% Similarity=0.206 Sum_probs=143.4
Q ss_pred ChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchHHHHH
Q 001793 22 TKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDI 101 (1012)
Q Consensus 22 ~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~lkdI 101 (1012)
+.++-++-|..+..-.+...|+ ..+..+++..+++-+ |.+.--.++
T Consensus 2 ~v~~~~~~~~s~~~if~k~Q~s-~aGhrk~~a~l~~~~---------------------------------t~~~f~~~f 47 (885)
T COG5218 2 TVSETVSSLESMQLIFNKIQQS-SAGHRKSLAELMEML---------------------------------TAHEFSEEF 47 (885)
T ss_pred chhHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHH---------------------------------HHHhhHHHH
Confidence 3456677777777777777554 234445555444433 111112233
Q ss_pred HHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccCC-ccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhc
Q 001793 102 FQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1012)
Q Consensus 102 f~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~-~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~ 180 (1012)
.+..-..++-=++++.| .+-...|.++-++ .|.|.| +.+++...|.+.+..+ +...++|....+.|+.-+.+
T Consensus 48 lr~vn~IL~~Kk~~si~--dRil~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~d 120 (885)
T COG5218 48 LRVVNTILACKKNPSIP--DRILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLSD 120 (885)
T ss_pred HHHHHHhhccccCCCcH--HHHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHHH
Confidence 33333333332334444 3444444444333 467777 6899999999888765 45567899999999988877
Q ss_pred ccccccHHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhhCc
Q 001793 181 ESEDIQEDLLVILLSALGR---NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP 257 (1012)
Q Consensus 181 E~~~v~~~~ld~il~~~~~---~~~~~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~~P 257 (1012)
--..|...+-..++..+.. .+..+.+.=|..+ -.||.++ .+ +...+.-.++..+-+..|
T Consensus 121 ~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~------------L~~~Qe~-~~-----neen~~~n~l~~~vqnDP 182 (885)
T COG5218 121 VVREIDEVLANGLLEKLSERLFDREKAVRREAVKV------------LCYYQEM-EL-----NEENRIVNLLKDIVQNDP 182 (885)
T ss_pred hcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH------------HHHHHhc-cC-----ChHHHHHHHHHHHHhcCc
Confidence 7666666666666654421 1111112111111 1233332 11 122233445555555555
Q ss_pred hhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC
Q 001793 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR 337 (1012)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~ 337 (1012)
+ ..+|..|.- +++. -++|+-.-|.|..|.+...|.-+-+.+-.=+---.+.
T Consensus 183 S-----------------~EVRr~all----ni~v--------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l 233 (885)
T COG5218 183 S-----------------DEVRRLALL----NISV--------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSL 233 (885)
T ss_pred H-----------------HHHHHHHHH----Heee--------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc
Confidence 3 567776642 2222 1346678899999999999987655442211000011
Q ss_pred CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh
Q 001793 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1012)
Q Consensus 338 ~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~ 371 (1012)
+..+.|. .+.--|.|-|..||-+++.++..-..
T Consensus 234 si~kri~-l~ewgl~dRe~sv~~a~~d~ia~~w~ 266 (885)
T COG5218 234 SIDKRIL-LMEWGLLDREFSVKGALVDAIASAWR 266 (885)
T ss_pred cccceeh-hhhhcchhhhhhHHHHHHHHHHHHhc
Confidence 1111222 45556889999999999999875443
No 117
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=62.14 E-value=3.1e+02 Score=32.08 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC--CChh------HHH
Q 001793 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR--ADAP------QIL 344 (1012)
Q Consensus 274 e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~-~~~--~~~~------~i~ 344 (1012)
.......+|.+++++-|.. |.+--.+.+.+.+.-+.|-++.||.+.++-.|.+-.-. .++ +... ++.
T Consensus 36 ~~~k~k~lasq~ip~~fk~----fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~ 111 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKH----FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLT 111 (460)
T ss_pred cchHHHHHHHHHHHHHHhh----CchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHH
Confidence 3455667778888888864 33333567888888888888888888887766533210 000 0001 111
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHH
Q 001793 345 TALCDRLLDFDENVRKQVVAVICD 368 (1012)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~ 368 (1012)
.-+..-.. .||.+|-.+.+-|.+
T Consensus 112 ~Lf~~~~~-~D~~irek~l~fi~t 134 (460)
T KOG2213|consen 112 GLFGQIEV-GDEQIREKVLKFIRT 134 (460)
T ss_pred HHHhhhhh-hhHHHHHHHHHHHHH
Confidence 22222334 589999888777653
No 118
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=61.98 E-value=1.2e+02 Score=37.51 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhh-------hhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-CchhhhhhhhhhhccccCCCh
Q 001793 205 ARRLAMNVIEQCA-------GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQL 276 (1012)
Q Consensus 205 a~~la~~v~~~~~-------~~l~~~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~-~P~lL~~Vip~Le~eL~se~~ 276 (1012)
.+.++...|.... +.+.+++.+.+.+.....+ ..+..-.|..|-.. .|..+....|.++.. ..-..
T Consensus 421 ~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~-~~~~~ 494 (574)
T smart00638 421 YGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGD-----EEEIQLYLKALGNAGHPSSIKVLEPYLEGA-EPLST 494 (574)
T ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCC-----chheeeHHHhhhccCChhHHHHHHHhcCCC-CCCCH
Confidence 3455666665432 4455666666655443211 11112223333222 566666666666621 23356
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchh
Q 001793 277 DTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDE 356 (1012)
Q Consensus 277 ~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~De 356 (1012)
.+|..|+..|.++-... -....+-+|.-|+++- .+++||++.+-.. +.++|+.. .+-......-.|++.
T Consensus 495 ~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P~~~---~l~~ia~~l~~E~~~ 563 (574)
T smart00638 495 FIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKPSVA---LLQRIAELLNKEPNL 563 (574)
T ss_pred HHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCCCHH---HHHHHHHHHhhcCcH
Confidence 78999999998775321 1244566777786655 4577998877654 45668632 233333334468888
Q ss_pred HHHHHH
Q 001793 357 NVRKQV 362 (1012)
Q Consensus 357 kVR~aa 362 (1012)
.|+.-+
T Consensus 564 QV~sfv 569 (574)
T smart00638 564 QVASFV 569 (574)
T ss_pred HHHHHh
Confidence 888764
No 119
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=61.25 E-value=2.5e+02 Score=30.54 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhhcccccHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhh------ccc
Q 001793 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKE------ENE 659 (1012)
Q Consensus 586 ~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~L~~------~~~ 659 (1012)
..+++.|=.-+..- | .+++..++.+..-.+.+.......+.+++..+-+..|.+| +..+.+...+.. .+.
T Consensus 19 ~~~L~~L~~l~~~~--~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~ 94 (234)
T PF12530_consen 19 LPLLEALPSLACHK--N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSK 94 (234)
T ss_pred HHHHHHHHHHhccC--c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCC
Confidence 34455544433333 2 4555555543321112222234578899999999999999 454544444111 111
Q ss_pred cchHhHHHHHHHhccchHhhhhhccchHHHHHHHHh-hcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCC
Q 001793 660 IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTH 738 (1012)
Q Consensus 660 ~~~~~~L~~L~~~~k~~~~~~~~~~~~~~~~L~~la-~~Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 738 (1012)
.......-..+..-..+....+.....+...+..+. ..+.+...-.|+.+|..+.+.+ ...+....+-+..+++ .+.
T Consensus 95 ~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l~-~~~ 172 (234)
T PF12530_consen 95 DEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKLS-LDY 172 (234)
T ss_pred cchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhcC-Ccc
Confidence 111122222222223333333333345777788877 6677888889999998887543 3333334455555552 236
Q ss_pred CchHHHHHHHHHhhcccc
Q 001793 739 LPAVLQSLGCIAQTAMPV 756 (1012)
Q Consensus 739 ~~~~L~sL~~ia~~~p~~ 756 (1012)
-|..+.+|.+++.+.|..
T Consensus 173 rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 173 RPLVLKSLCSLFALVPQG 190 (234)
T ss_pred chHHHHHHHHHHHHhccc
Confidence 688888899999887744
No 120
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=60.46 E-value=37 Score=35.59 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=57.5
Q ss_pred hHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 341 ~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
+.-++.+.+...++|..||..|++.+..+....+- -|.+.+-++.-..-|....||+.|...+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv-nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV-NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC-ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 34556677789999999999999999865554432 26677788888899999999999999999999987
No 121
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=59.57 E-value=4.1e+02 Score=32.63 Aligned_cols=51 Identities=29% Similarity=0.327 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhcc
Q 001793 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1012)
Q Consensus 624 ~~~~a~~LL~~iS~~~P~lf~~~~~~L~~~L~~~~~~~~~~~L~~L~~~~k 674 (1012)
.+-+|+++|+.+|..+|+.-..+-.++-+++.++|-+...-+.-+|-+.|.
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 456799999999999999999998888888998887666667777777764
No 122
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=58.80 E-value=2.6e+02 Score=35.88 Aligned_cols=139 Identities=21% Similarity=0.231 Sum_probs=102.7
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 001793 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 339 (1012)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~-~~~~~~ 339 (1012)
..|+|.+.+-+..|...+|..|++.++.+++--..+. ..+......++.-..|.+..||-...+....+-.. -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3466777776677789999999999998887543322 77788889999999999999998877776653322 1222 1
Q ss_pred hhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhh-h---cCCCCH-HHHHHHHHhhccCChhHHHHHH
Q 001793 340 APQILTALCDRLLDFDENVRKQVVAVICDVACH-A---LNSIPV-ETVKLVAERLRDKSVLVKRYTM 401 (1012)
Q Consensus 340 ~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~-~---~~~v~~-~~l~~l~eR~rDKk~~VR~~Ai 401 (1012)
..+....+..-+.|..+.||.++-.-+..+++. + ...++. .++-.+..-+-|....||....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 236778888899999999999998888887763 3 123333 4467888889999999887643
No 123
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.36 E-value=5.1e+02 Score=33.83 Aligned_cols=241 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHhhcCC-ChhcHHHHHHHHHHHHh-----------cccccccHHHHHHHHHhhcCCCCh--HHHHHH
Q 001793 144 CDELVNEMYSTFFAVASDD-HPESVLSSMQTIMIVLL-----------EESEDIQEDLLVILLSALGRNKND--TARRLA 209 (1012)
Q Consensus 144 ~~~li~~lF~~~~~~v~~~-~~~~v~~~m~~Il~~vI-----------~E~~~v~~~~ld~il~~~~~~~~~--~a~~la 209 (1012)
+++++..+++-+=..|+.+ .=+.+.+++..|+..+| +--+.=|.+-+..=+.-++...+. +|..+-
T Consensus 317 s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l 396 (1010)
T KOG1991|consen 317 SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFL 396 (1010)
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHH
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhc------CCCCCCCCcchHHHHHHHHHhh----Cc--hhhhh-hhhhhhccccCCCh
Q 001793 210 MNVIEQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC----SP--QILSG-VVPYLTGELLTDQL 276 (1012)
Q Consensus 210 ~~v~~~~~~~l~~~i~~~f~~~l~------~~~~~~~~~~~~h~li~el~~~----~P--~lL~~-Vip~Le~eL~se~~ 276 (1012)
-.++.+-..--=|-+-+|..+++. .+.........+...+-.|..+ +| +.+.. +.+.+-.++++.--
T Consensus 397 ~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g 476 (1010)
T KOG1991|consen 397 TTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG 476 (1010)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh
Q ss_pred HHHHHHHHHHHHhhcCC---CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC-----hhHHHHHHH
Q 001793 277 DTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-----APQILTALC 348 (1012)
Q Consensus 277 ~~R~~At~~lg~m~s~~---~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~-----~~~i~~~l~ 348 (1012)
..|..|..++|..=+.. ..++.+.+..+.+++++ |.+-+||++-+-+...++.+.+..++ .+.+.+.|.
T Consensus 477 ~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 477 YLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELL 553 (1010)
T ss_pred HHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH
Q ss_pred HHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 001793 349 DRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE 387 (1012)
Q Consensus 349 ~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~e 387 (1012)
.-.++++-.+=..+.+.+..--..-+.-+-.++-.++++
T Consensus 554 ~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 554 KLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAE 592 (1010)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
No 124
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.14 E-value=78 Score=35.74 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=118.6
Q ss_pred hHHHHHHHHHhhCchhhhh----hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhH
Q 001793 244 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1012)
Q Consensus 244 ~~h~li~el~~~~P~lL~~----Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~V 319 (1012)
+....|+.|-.+.|+.|.+ ||.++-.++++-.-.+=..|+.++|+||+.-+.-..+.-.++-...|+|..+-..=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4566788888888876654 999999999999999999999999999998776666788888999999998888888
Q ss_pred HHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC------CCCHHHHHHHHHhhccCC
Q 001793 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN------SIPVETVKLVAERLRDKS 393 (1012)
Q Consensus 320 R~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~------~v~~~~l~~l~eR~rDKk 393 (1012)
|...-++..... +|-. ..-++..|.-.+.-...+||..+...+.... ..+. ....++...+++-++||=
T Consensus 187 reda~kAL~aMV-~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAMV-NHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHHH-hccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 887777765533 3322 2467788888888899999998655443111 1111 113355678999999999
Q ss_pred hhHHHHHH---HHHHHHHHH
Q 001793 394 VLVKRYTM---ERLADIFRG 410 (1012)
Q Consensus 394 ~~VR~~Ai---~~L~~lY~~ 410 (1012)
+.+|+.|= ..+...|+.
T Consensus 262 p~~~~~a~~~~~~~~~v~~~ 281 (334)
T KOG2933|consen 262 PELREAARFVRLELKEVLKT 281 (334)
T ss_pred cccccchhHHHHhHHHHHHH
Confidence 99995544 444445554
No 125
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=56.06 E-value=21 Score=30.09 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=29.3
Q ss_pred HHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHH
Q 001793 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRK 360 (1012)
Q Consensus 322 ~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~ 360 (1012)
++|+.++.|...|+ ..||...|.++-+||||.|-.
T Consensus 7 k~VQ~iKEiv~~hs----e~eIya~L~ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHS----EEEIYAMLKECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCC----HHHHHHHHHHhCCCHHHHHHH
Confidence 67899999887755 258999999999999998754
No 126
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.97 E-value=56 Score=40.70 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=32.1
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhhcccchHHHHhh
Q 001793 381 TVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1012)
Q Consensus 381 ~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~~~~wIP~~iL~~ 435 (1012)
.+..+--.+.|+.-=||+-|+-++|-+--... .....++..|-..+...
T Consensus 625 Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t------~~~~pkv~~frk~l~kv 673 (929)
T KOG2062|consen 625 AINLLEPLTSDPVDFVRQGALIALAMIMIQQT------EQLCPKVNGFRKQLEKV 673 (929)
T ss_pred HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcc------cccCchHHHHHHHHHHH
Confidence 34455566778888899999999988766532 22234566666666655
No 127
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=55.31 E-value=1e+02 Score=38.14 Aligned_cols=190 Identities=17% Similarity=0.240 Sum_probs=104.1
Q ss_pred HHHHHHhc-cCCCCCCCCchhhHHHHHHHHHhhhhhhhhccCCccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhc
Q 001793 102 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1012)
Q Consensus 102 f~l~~~~~-~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~ 180 (1012)
|..++.+| ......+.+.-.+-..+ |....+||-.+|-.|..|+..+++.-.- +.++.+.....+.+..+..
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~---L~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRW---LKALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHH---HHHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 44445555 33333333333343334 4445567777776688888888777321 2356677777888888887
Q ss_pred ccccccHHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCC--CCCCcchHHHHHHHHHhhCch
Q 001793 181 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR--PGHSHIDYHEVIYDVYRCSPQ 258 (1012)
Q Consensus 181 E~~~v~~~~ld~il~~~~~~~~~~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~~~~--~~~~~~~~h~li~el~~~~P~ 258 (1012)
....--..+++.+..+|.+.....+-. .+... ......++|.++..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777777888999988887642210000 11111 111233689999999999999
Q ss_pred hhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 001793 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1012)
Q Consensus 259 lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1012)
....++|.|....=.-..+.+...+ -+-.++.-.+. ...--.++|..-+.|...++++|.+.|=+
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~dd 223 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIELDD 223 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCccc
Confidence 9999999888877655544444332 22333322111 13334577887788877777766665543
No 128
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.20 E-value=5.5e+02 Score=32.69 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=89.1
Q ss_pred CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCCh--hHHHH---HHHHhHHH
Q 001793 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV--AVRMS---VLEHVKSC 330 (1012)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~--~VR~~---~v~~~~~i 330 (1012)
+|+.-...--++...|.+.++..+..|.+.+=.|+.. | ..+|++... +-||.=.+- ++..- ..+.+|
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~-IiRfvlps~~~elKKLly~ywE~vP-- 85 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMT-IIRFVLPSRNHELKKLLYYYWELVP-- 85 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHH-HhheeeccCchHHHHHHHHHHHHcc--
Confidence 3444444445778889999999999999988777765 3 344554433 223332211 11111 111111
Q ss_pred HhcCCCCCChh---HHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001793 331 LLTDPSRADAP---QILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1012)
Q Consensus 331 l~~~~~~~~~~---~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1012)
.+++++.... -+.+++++-|.-|.|=||-.+..-+|.+--.. +=+.++-++..-.--++.=||+.|+-.+..+
T Consensus 86 -Kt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~E---Llepl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 86 -KTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPE---LLEPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred -ccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHH---HhhhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 2333332223 34588899999999999999999988653321 1122334455555567889999999999999
Q ss_pred HHHh
Q 001793 408 FRGC 411 (1012)
Q Consensus 408 Y~~~ 411 (1012)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9973
No 129
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=54.59 E-value=89 Score=32.76 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=72.5
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCC-------------Ch-----------hhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 001793 271 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1012)
Q Consensus 271 L~se~~~~R~~At~~lg~m~s~~~~-------------~~-----------~~~~~~~~~~fL~R~~D~s~~VR~~~v~~ 326 (1012)
+...+..+|..|..++.-|+.+... +| .+-|..+...- -...++.+=.+.+++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 5567899999999999999987521 11 23444444433 245567788899999
Q ss_pred hHHHHhcCCCC----CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhh
Q 001793 327 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1012)
Q Consensus 327 ~~~il~~~~~~----~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la 370 (1012)
....+.+.|.. +...++++.+..++...|..||.++..+++.+.
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99888888863 345677889999999999999999988887654
No 130
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.61 E-value=6.3e+02 Score=32.30 Aligned_cols=238 Identities=17% Similarity=0.146 Sum_probs=113.8
Q ss_pred HHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHHHhccchHhhhhhccchHHHHHHHHhhcCChHHHHHHHHH
Q 001793 630 DILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHA 709 (1012)
Q Consensus 630 ~LL~~iS~~~P~lf~~~~~~L~~~L~~~~~~~~~~~L~~L~~~~k~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~ 709 (1012)
.-...+...+|..+...+..|--++........-.++++|.+.+-..+.....+ ..-|+.+....+..-|-+|+-.
T Consensus 267 rai~~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c----N~elE~lItd~NrsIat~AITt 342 (865)
T KOG1078|consen 267 RAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC----NLDLESLITDSNRSIATLAITT 342 (865)
T ss_pred HHHhhccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc----chhHHhhhcccccchhHHHHHH
Confidence 344555666666666655555555554444444556777776664433322211 2235556666666777777777
Q ss_pred HHhhcCCCccchHHHHHHHHHHhhh-hc-CCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCC
Q 001793 710 LAAITKDDGLKSLSVLYKRLVDMLE-EK-THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACW 787 (1012)
Q Consensus 710 L~~~~~~~~~~~~~~l~~~l~~~l~-~~-~~~~~~L~sL~~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W 787 (1012)
|.+....+ ....|++.|..... -+ ..-.....++-.+....| .+-+.+.+|+. .+|...+ +-.-+..-
T Consensus 343 LLKTG~e~---sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp----~k~~~~m~FL~-~~Lr~eG--g~e~K~ai 412 (865)
T KOG1078|consen 343 LLKTGTES---SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP----RKHTVMMNFLS-NMLREEG--GFEFKRAI 412 (865)
T ss_pred HHHhcchh---HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc----HHHHHHHHHHH-HHHHhcc--CchHHHHH
Confidence 76443322 12234444444332 11 133444555555555444 44455777765 3333311 10000000
Q ss_pred CCC-----hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCCh-----------hHHhhhh
Q 001793 788 DDR-----SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSS-----------VDKAHLR 851 (1012)
Q Consensus 788 ~~~-----~~~~~~Ki~aLK~lvn~l~~~~~~~~~~~~~~~~~lL~~i~~~Gel~~~~~t~~-----------~~~srLR 851 (1012)
++. .+.-.+|..||--+.-....+ ..-+...++|.-++.+|=..+ +|. -+-++.|
T Consensus 413 vd~Ii~iie~~pdsKe~~L~~LCefIEDc------e~~~i~~rILhlLG~EgP~a~---~Pskyir~iyNRviLEn~ivR 483 (865)
T KOG1078|consen 413 VDAIIDIIEENPDSKERGLEHLCEFIEDC------EFTQIAVRILHLLGKEGPKAP---NPSKYIRFIYNRVILENAIVR 483 (865)
T ss_pred HHHHHHHHHhCcchhhHHHHHHHHHHHhc------cchHHHHHHHHHHhccCCCCC---CcchhhHHHhhhhhhhhhhhH
Confidence 000 011123454544433333221 112333455544454444332 222 2345679
Q ss_pred HHHHHHHHHhhhhcCCCCCHHHHHHHhhcccCCchhHHHH
Q 001793 852 LASAKAVLRLSRQWDHKIPVDVFHLTLRTPEISFPQAKKL 891 (1012)
Q Consensus 852 L~Aa~~lLKLa~~~~~~i~~~~~~l~~~~~qD~~~~VR~~ 891 (1012)
.+|-.++-|.... +....+.+-.++-.-..|...+||.+
T Consensus 484 aaAv~alaKfg~~-~~~l~~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 484 AAAVSALAKFGAQ-DVVLLPSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred HHHHHHHHHHhcC-CCCccccHHHHHHHHhcCchHHHHHH
Confidence 9999998888832 22333444444444456777788876
No 131
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=50.10 E-value=1.6e+02 Score=38.41 Aligned_cols=92 Identities=22% Similarity=0.383 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhCchhhhhhhhhhhccccC-------CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCCh
Q 001793 245 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 317 (1012)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~Le~eL~s-------e~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~ 317 (1012)
+-.++..|+++-|++-..++-+|..+... -+...++..+..+|.|..-.-...... =+..+.+|.-|.-.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~i-f~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEI-FSCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHH-HHHHHHHHHhcccccH
Confidence 45789999999999999999999888753 367788999999999987642111111 2366788888999999
Q ss_pred hHHHHHHHHhHHHHhcCCCC
Q 001793 318 AVRMSVLEHVKSCLLTDPSR 337 (1012)
Q Consensus 318 ~VR~~~v~~~~~il~~~~~~ 337 (1012)
++=+.+++.|+.+|.++|..
T Consensus 560 Em~c~lLE~~GrfLlr~pEt 579 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPET 579 (1128)
T ss_pred HHHHHHHHhcchhhhcChhH
Confidence 99999999999999999963
No 132
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=49.90 E-value=2.2e+02 Score=32.44 Aligned_cols=150 Identities=17% Similarity=0.179 Sum_probs=92.1
Q ss_pred hhhhhhccccCCChHHHHHHHHHHHHhhcC--CCCChhhhcHHHHHHHHhcccCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 001793 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 337 (1012)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~--~~~~~~~~~~~~~~~fL~R~~D~s--~~VR~~~v~~~~~il~~~-~~~ 337 (1012)
++.+++.-++.....++..|.+++|-+.-. +|.+-..-|..+......-..|.+ +.+|..|+.+.+-+-.-. .+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 455666667777778899999999977544 344545556555555555556654 578989987766533311 222
Q ss_pred CChhHHHHHHH---HH-cC--C---------chhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 001793 338 ADAPQILTALC---DR-LL--D---------FDENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 398 (1012)
Q Consensus 338 ~~~~~i~~~l~---~r-L~--D---------~DekVR~aaV~~i~~la~~~~----~~v~~~~l~~l~eR~rDKk~~VR~ 398 (1012)
++..++++.+. .. .. | ++..|..+|+.+.+=+..... ...-.+.+..+.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 23332334444 11 11 2 135688888888776553221 111223345566666677889999
Q ss_pred HHHHHHHHHHHHhh
Q 001793 399 YTMERLADIFRGCC 412 (1012)
Q Consensus 399 ~Ai~~L~~lY~~~~ 412 (1012)
.|=+.+|-+|-...
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999864
No 133
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.84 E-value=4.8e+02 Score=31.51 Aligned_cols=251 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC--CCCCChhHHHHHH
Q 001793 270 ELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD--PSRADAPQILTAL 347 (1012)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~--~~~~~~~~i~~~l 347 (1012)
++.+++.--|..+|++=..|--..+ -.-+..-..++.-..--.+.=|+...-++..+.... +++..-..+...+
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~----~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~l 263 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQD----LEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSL 263 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCC----ccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHH
Q ss_pred HHHcCCchhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchh
Q 001793 348 CDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQN 423 (1012)
Q Consensus 348 ~~rL~D~DekVR~aaV~~i~~la~~~~~~v----~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~~ 423 (1012)
..|..||+.++|..|+..++.++...++.+ +.-+-..+....-|-+.+|--+||++|..+-... .+.....
T Consensus 264 a~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-----~~~~l~~ 338 (533)
T KOG2032|consen 264 ANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-----SNDDLES 338 (533)
T ss_pred HHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-----hhcchhh
Q ss_pred hcccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--
Q 001793 424 EFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSV---------KDRVRHWVRIFSGFDRIEMKALEKILEQKQR-- 492 (1012)
Q Consensus 424 ~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~---------~~R~~~l~~l~~~lD~~~~ka~~~il~~k~~-- 492 (1012)
-+-.|--++-..+=..+.+-+.--.++|+.|.|+.--+ ++|-..++--..+..+.--+|+...+..-.-
T Consensus 339 ~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l 418 (533)
T KOG2032|consen 339 YLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNL 418 (533)
T ss_pred hchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchh
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhhhcCC
Q 001793 493 LQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE 532 (1012)
Q Consensus 493 l~~~~~~~l~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd 532 (1012)
.+++...|++-.. +.+-+..+.=.+.....+...+||
T Consensus 419 ~rke~~~~~q~~l---d~~~~~~q~Fyn~~c~~L~~i~~d 455 (533)
T KOG2032|consen 419 VRKELYHLFQESL---DTDMARFQAFYNQWCIQLNHIHPD 455 (533)
T ss_pred HHHHHHHHHhhhh---HHhHHHHHHHHHHHHHHHhhhCHH
No 134
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.97 E-value=3.2e+02 Score=33.79 Aligned_cols=362 Identities=16% Similarity=0.197 Sum_probs=193.3
Q ss_pred CCChHHHHHHHHHHHHHHhhcCCCCc-------------hhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhh
Q 001793 20 PSTKDGLVKLLKQAATCLSELNQSPP-------------ASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRI 86 (1012)
Q Consensus 20 ~~~~~~Ll~rL~~l~~~L~~~~Q~~~-------------~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi 86 (1012)
..+.++|+.-|+.++.-=...+--.. .+.+.-+.++++.+ .++|+....-||..+|-.++-+...
T Consensus 311 algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci--~~~l~D~~~~vRi~tA~alS~lae~ 388 (975)
T COG5181 311 ALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCI--SKLLKDRSRFVRIDTANALSYLAEL 388 (975)
T ss_pred hhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHH--HHHhhccceeeeehhHhHHHHHHHh
Confidence 34567888888776543322111000 11233344544433 3456666677999999988877655
Q ss_pred cCCCCCCCchHHHHHHHHHHH---hccCC---------C---CCCCCchhhH-----HHHHHHHH---------hhhhhh
Q 001793 87 TAPEAPYSDDVLKDIFQLIVG---TFSGL---------K---DTGGPSFGRR-----VVILETLA---------KYRSCV 137 (1012)
Q Consensus 87 ~APdaPy~~~~lkdIf~l~~~---~~~~L---------~---d~~~~~~~~~-----~~lLe~la---------~vks~v 137 (1012)
- -||.-+|+..||..+-+ |=+|- + .--+|.|.-| ..|+-+.- .++.++
T Consensus 389 ~---~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~ 465 (975)
T COG5181 389 V---GPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVE 465 (975)
T ss_pred c---CCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHH
Confidence 3 48999999999988743 22221 0 0013333332 33443331 122222
Q ss_pred hhccC-C-------ccHHHHHHHHHHHHh-hcCC-ChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCC---hH
Q 001793 138 VMLDL-E-------CDELVNEMYSTFFAV-ASDD-HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DT 204 (1012)
Q Consensus 138 l~~dl-~-------~~~li~~lF~~~~~~-v~~~-~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~~~~---~~ 204 (1012)
-.||- + -+++..++|+-|..- +.++ -+-++...-+.|+..... .+.+.+-|++.+..+.. +-
T Consensus 466 ~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g-----~~~v~~kil~~~~De~ep~r~m 540 (975)
T COG5181 466 RICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG-----DPRVSRKILEYYSDEPEPYRKM 540 (975)
T ss_pred HHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC-----ChHHHHHHHhhccCCcchhhhh
Confidence 23442 1 257888888888764 2122 222333333444444433 35677788887754321 12
Q ss_pred HHHHHHHHHHHhh--hhhHHHHHHHHHHhh---cCCCCCCCCcch-----HHHHHHHHHhhCchhhhhhhhhhhccccCC
Q 001793 205 ARRLAMNVIEQCA--GKLEAGIKQFLVSSM---SGDSRPGHSHID-----YHEVIYDVYRCSPQILSGVVPYLTGELLTD 274 (1012)
Q Consensus 205 a~~la~~v~~~~~--~~l~~~i~~~f~~~l---~~~~~~~~~~~~-----~h~li~el~~~~P~lL~~Vip~Le~eL~se 274 (1012)
+..++..++..-. +-=++....|+.+++ .+++...+.... ...+=+.--.+.|.+++ .+-.-|++.
T Consensus 541 ~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivS----tiL~~L~~k 616 (975)
T COG5181 541 NAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVS----TILKLLRSK 616 (975)
T ss_pred hhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHH----HHHHHhcCC
Confidence 2333444443221 111122222222222 111111100000 00000001112233333 333457789
Q ss_pred ChHHHHHHHHHHHHhhcCC---C-------------CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-
Q 001793 275 QLDTRLKAVGLVGDLFAVP---G-------------SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR- 337 (1012)
Q Consensus 275 ~~~~R~~At~~lg~m~s~~---~-------------~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~- 337 (1012)
.+.+|..|..+.|-+.-.- | .++...||.+...- +++...|...|.-+
T Consensus 617 ~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsi---------------l~Ai~~I~sv~~~~~ 681 (975)
T COG5181 617 PPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSI---------------LKAICSIYSVHRFRS 681 (975)
T ss_pred CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHH---------------HHHHHHHhhhhcccc
Confidence 9999999999998765321 1 12344555555444 44444444433111
Q ss_pred --CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHH-HH---HHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 338 --ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET-VK---LVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 338 --~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~-l~---~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
.-+++|+..|.--|..-++||-..+|+-++.++...++.++..- ++ .+.+-++--|.++|+.|.+++|-+=+.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 13568888888888899999999999999999999999998853 33 445666667789999999999877654
No 135
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.37 E-value=5.9e+02 Score=31.09 Aligned_cols=204 Identities=17% Similarity=0.154 Sum_probs=122.5
Q ss_pred hhhccccCCChHHHHHHHHHHHHhhcCCC---CChhhh--cHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC--
Q 001793 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQ--FHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-- 338 (1012)
Q Consensus 266 ~Le~eL~se~~~~R~~At~~lg~m~s~~~---~~~~~~--~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~-- 338 (1012)
..-..+.|++.+.+..|++.+-+++|... .+.+-. -=+.+-.||+| |..+.+|.+..=+..+|-.-..+..
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhccc
Confidence 33444668999999999999999999753 111111 12346677774 4456666666556656554322210
Q ss_pred -ChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHhh
Q 001793 339 -DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERL-RDKSVLVKRYTMERLADIFRGCC 412 (1012)
Q Consensus 339 -~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~----v~~~~l~~l~eR~-rDKk~~VR~~Ai~~L~~lY~~~~ 412 (1012)
.....+..|...+..+++.||-.||-+++.+|-..... ++-..+..+..-+ .+.+.+..+.++=+|+++.+.-
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk- 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK- 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC-
Confidence 11234567889999999999999999999998655331 2333333333333 3333477888888888887752
Q ss_pred hhccCCCcchhhcccchHHHHhhhhccCCCchhHHHHhhhcCCCCCCCHHHH-------HHHHHHHHhcCCH
Q 001793 413 LRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDR-------VRHWVRIFSGFDR 477 (1012)
Q Consensus 413 ~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R-------~~~l~~l~~~lD~ 477 (1012)
+++.....+..|=..|+.+.|..|.+. +.|.+..=+-+--..++.-. +.+++.+.++-+.
T Consensus 227 ----~P~P~~~~v~~iLp~L~~ll~~~D~~V-l~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~ 293 (514)
T KOG0166|consen 227 ----NPSPPFDVVAPILPALLRLLHSTDEEV-LTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP 293 (514)
T ss_pred ----CCCCcHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc
Confidence 233344667777778888888877332 35554322211111122211 3466677666554
No 136
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.21 E-value=85 Score=39.05 Aligned_cols=105 Identities=23% Similarity=0.240 Sum_probs=80.2
Q ss_pred CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCC-CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 001793 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1012)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~-~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~ 334 (1012)
.|+++....-+|-.-|.+-+..+|-+|.+.+.+|.+... .+..+.|.++--.-|+ .+++++||...|+. |-.-
T Consensus 323 e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk--terDvSirrravDL----LY~m 396 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK--TERDVSIRRRAVDL----LYAM 396 (938)
T ss_pred cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc--cccchHHHHHHHHH----HHHH
Confidence 689999999999999999999999999999999998743 3556778777655554 46777888877765 4444
Q ss_pred CCCCChhHHHHHHHHHcCCchhHHHHHHHHHH
Q 001793 335 PSRADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1012)
Q Consensus 335 ~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i 366 (1012)
.+.+.+.+|+..+..-|--.|...|-+.|--+
T Consensus 397 cD~~Nak~IV~elLqYL~tAd~sireeivlKv 428 (938)
T KOG1077|consen 397 CDVSNAKQIVAELLQYLETADYSIREEIVLKV 428 (938)
T ss_pred hchhhHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 45556778888888777777777776654443
No 137
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=47.39 E-value=97 Score=34.23 Aligned_cols=135 Identities=14% Similarity=0.147 Sum_probs=72.2
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcC
Q 001793 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1012)
Q Consensus 273 se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~ 352 (1012)
++|+.++..|.-++|..-+.+...-.-.+-..-.-..+-.+|.++.||...+.+..++=.+......++.-+..+.+...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986554421111111122233566778899999988777765432221111112223334444322
Q ss_pred --CchhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 001793 353 --DFDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1012)
Q Consensus 353 --D~DekVR~aaV~~i~~la~~~-~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~l 407 (1012)
..|..|..++.+.+..++... .+.+=...+..+......=...+|..+++.|..+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 236777788888888776432 2221111222222222222446676676666554
No 138
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=47.32 E-value=1.7e+02 Score=33.29 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=72.3
Q ss_pred HHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 001793 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1012)
Q Consensus 251 el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1012)
.|.-+.|.++.+++|-||+| .+ +.=..+.+++-++-..-+.+ .=|..+|.+.+ .+|++|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede-~s---E~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE-GS---EFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC-Cc---hHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56678899999999999986 22 22233444454444332322 34577888888 6899999988887664
Q ss_pred HhcCC------C--------CCChhHHHHHHHHHcCCchhHHHHHHHHHHHH
Q 001793 331 LLTDP------S--------RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1012)
Q Consensus 331 l~~~~------~--------~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~ 368 (1012)
+-... . ..+..-+++++...|.|.+.-|++.+..-+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 0 12234577999999999999999997777653
No 139
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=47.31 E-value=6e+02 Score=31.35 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=16.8
Q ss_pred HHHHHHhhccCCh--hHHHHHHHHHHHHHH
Q 001793 382 VKLVAERLRDKSV--LVKRYTMERLADIFR 409 (1012)
Q Consensus 382 l~~l~eR~rDKk~--~VR~~Ai~~L~~lY~ 409 (1012)
.+.+||++|=|+. ..|...|.-+=++-+
T Consensus 134 ~kslWEkLR~k~~~ke~R~klv~el~~lik 163 (652)
T KOG2050|consen 134 AKSLWEKLRRKTTPKEERDKLVSELYKLIK 163 (652)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHh
Confidence 4567777777776 666655554443333
No 140
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=46.29 E-value=5.2e+02 Score=31.08 Aligned_cols=166 Identities=13% Similarity=0.165 Sum_probs=96.8
Q ss_pred ChhcHHHHHHHHHHHHhcccccccH----HHHHHHHHhhcCCCCh----HHHHHHHHHHHHhhhhhHHHHHHHHHHhhcC
Q 001793 163 HPESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG 234 (1012)
Q Consensus 163 ~~~~v~~~m~~Il~~vI~E~~~v~~----~~ld~il~~~~~~~~~----~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~ 234 (1012)
....-...+..|+.-+-+.+.+|.. ++|..+++-+...+.. -|.++-.+.|++-+++|..+.---..-++..
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 3455667788888888888888988 4555555555554332 5666677777777777766543333222211
Q ss_pred --CCCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCC-ChhhhcHHHHHHHHhc
Q 001793 235 --DSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKR 311 (1012)
Q Consensus 235 --~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~-~~~~~~~~~~~~fL~R 311 (1012)
+..+.......-+.+.-+..+.|..=..||-.+ +..+|++.=.++++.+.+||..-.. .+...-|++-=.++.-
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~---Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqa 456 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPL---ILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQA 456 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhH---HhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHH
Confidence 110111111233455556666665433333222 2337777778889899999986532 2333445555566666
Q ss_pred ccCCChhHHHHHHHHhHHHH
Q 001793 312 LTDRIVAVRMSVLEHVKSCL 331 (1012)
Q Consensus 312 ~~D~s~~VR~~~v~~~~~il 331 (1012)
+.-.|..||..+|=+.-.+.
T Consensus 457 y~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 457 YDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hcCchHHhhhhHHHhHHHHH
Confidence 66777777777776655544
No 141
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=45.81 E-value=1.6e+02 Score=33.52 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=85.6
Q ss_pred ChHHHHH---HHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh--------hH
Q 001793 275 QLDTRLK---AVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQ 342 (1012)
Q Consensus 275 ~~~~R~~---At~~lg~m~s~~-~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~--------~~ 342 (1012)
|+..|-. .|..+-|+|... |..++..|....+.=| ..| +..|.+...+.++.|+.+. +.... .+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGL--iad-dasVKiLackqigcilEdc-DtnaVseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGL--IAD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcc--cCC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhh
Confidence 4445555 788899999875 5566766655555433 344 6688888888888877643 22222 25
Q ss_pred HHHHHHHHcCCchhHHHHHHHHHHHHhhhh--hcCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 343 ILTALCDRLLDFDENVRKQVVAVICDVACH--ALNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 343 i~~~l~~rL~D~DekVR~aaV~~i~~la~~--~~~~v-~~~-----~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
|.+-+..++...|+.|-.+|++.+..++.+ .++.+ +.+ -++.++.|+-| -+|-.....+-++++.
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 667888899999999999999999988753 23322 222 25567777754 4565556666666664
No 142
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=45.76 E-value=1.1e+02 Score=35.04 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.3
Q ss_pred HHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHc-CCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 001793 319 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1012)
Q Consensus 319 VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL-~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR 397 (1012)
=|....+....+ |.......+++++..-+ .+..|.+..+.+.+++.-...--..+|.++++.+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22224567888777775 4699999999999998633333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001793 398 RYTMERLADIFR 409 (1012)
Q Consensus 398 ~~Ai~~L~~lY~ 409 (1012)
+--+..+|..+.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 143
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.22 E-value=40 Score=40.69 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=60.6
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChhHHHH-HHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH------------
Q 001793 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT-ALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ 379 (1012)
Q Consensus 313 ~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~-~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~------------ 379 (1012)
+|+++-.|..=+-...-...-.. ...+++ -|.--..|.++.||+|||-+++-+.+.+...++.
T Consensus 526 ~d~ds~lRy~G~fs~alAy~GTg----n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~lv~tvelLs~shN~h 601 (926)
T COG5116 526 YDKDSILRYNGVFSLALAYVGTG----NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLLVGTVELLSESHNFH 601 (926)
T ss_pred cCchHHhhhccHHHHHHHHhcCC----cchhHhhhheeecccCchHHHHHHHHheeeeEecCcchhhHHHHHhhhccchh
Confidence 68888888765544433222111 113333 3444589999999999999998776666654422
Q ss_pred -------------------HHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 380 -------------------ETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 380 -------------------~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
..+..+--.|.|-..=||+-||.++|-+--.+
T Consensus 602 VR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 602 VRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred hhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 11224555677777788888888888776653
No 144
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=41.20 E-value=2.1e+02 Score=32.68 Aligned_cols=126 Identities=10% Similarity=0.167 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcccc-------cccHHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhh---
Q 001793 167 VLSSMQTIMIVLLEESE-------DIQEDLLVILLSALGR----NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSM--- 232 (1012)
Q Consensus 167 v~~~m~~Il~~vI~E~~-------~v~~~~ld~il~~~~~----~~~~~a~~la~~v~~~~~~~l~~~i~~~f~~~l--- 232 (1012)
|...++.++...|+.++ ..=+++++.+|.-... .+....-.+...+|++-.+.+.+.+.+.+..+.
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55556666666666544 2233444444432221 233356788888999888887777777665433
Q ss_pred ----cCCCCCC-CCcchHHHHHHHHHhhCchhhh--------hhhhhhhccccCCChHHHHHHHHHHHHhhcC
Q 001793 233 ----SGDSRPG-HSHIDYHEVIYDVYRCSPQILS--------GVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 292 (1012)
Q Consensus 233 ----~~~~~~~-~~~~~~h~li~el~~~~P~lL~--------~Vip~Le~eL~se~~~~R~~At~~lg~m~s~ 292 (1012)
.+|-... +-....++++..+.+.||+.+. .++-.+..-.++.+.++-..+.+.+..|+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 3321111 1223568899988888776664 4566677778888999989999999888863
No 145
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.96 E-value=3.5e+02 Score=31.19 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=65.1
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCC-C--Chhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHH-
Q 001793 270 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 343 (1012)
Q Consensus 270 eL~se~~~~R~~At~~lg~m~s~~~-~--~~~~--~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i- 343 (1012)
.|.+.+..+|..|+.++|..+.... + .+.. --+.+...+- .|.+..+|.+..=+....+.+++.+- .+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g~--~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPGQ--DEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHHH--HHHH
Confidence 6788999999999999999998642 1 0111 1134444443 67788899999999999898887531 122
Q ss_pred ----HHHHHHHcCCchhHHH--HHHHHHHHHhhhhh
Q 001793 344 ----LTALCDRLLDFDENVR--KQVVAVICDVACHA 373 (1012)
Q Consensus 344 ----~~~l~~rL~D~DekVR--~aaV~~i~~la~~~ 373 (1012)
+..|.+.+.+.+..|| ..|+.-+..+....
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 2577778888544444 45555555544433
No 146
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.74 E-value=8.9e+02 Score=30.94 Aligned_cols=153 Identities=16% Similarity=0.195 Sum_probs=101.9
Q ss_pred hhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCC
Q 001793 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 336 (1012)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~-~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~ 336 (1012)
+++-.|+|++|+.++++|=..|-.|+-.+|-.+-+|..+- ..-=++.-..-+.-..|++.-||-.---..+.|....|+
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh
Confidence 3455799999999999999999999999999999885331 111133344445555688888886555556666655554
Q ss_pred C----CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH------------HHH---HHHHHhhccCChhHH
Q 001793 337 R----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETV---KLVAERLRDKSVLVK 397 (1012)
Q Consensus 337 ~----~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~------------~~l---~~l~eR~rDKk~~VR 397 (1012)
. ...+.++..+..=|+| .++|=..+|-++..++....+..+. .++ -..++|..=--...|
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR 518 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLR 518 (859)
T ss_pred hcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHH
Confidence 2 1123455666666666 5788888898888887332222211 122 244555544457899
Q ss_pred HHHHHHHHHHHHHh
Q 001793 398 RYTMERLADIFRGC 411 (1012)
Q Consensus 398 ~~Ai~~L~~lY~~~ 411 (1012)
..|-+.|+.+-+..
T Consensus 519 ~AAYeALmElIk~s 532 (859)
T KOG1241|consen 519 SAAYEALMELIKNS 532 (859)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998864
No 147
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=40.71 E-value=7.1e+02 Score=29.80 Aligned_cols=63 Identities=16% Similarity=0.102 Sum_probs=39.6
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCC-CCCCchHH---HHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhh
Q 001793 67 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKY 133 (1012)
Q Consensus 67 h~d~~Vr~~~acCl~dilRi~APd-aPy~~~~l---kdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~v 133 (1012)
.+..++.-|+-.-+.|+++- .|. +++--+.. +++|.-|+..+. ..+.+-....+++|..+...
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhc
Confidence 45567999999999999998 332 22211111 466777777543 34555566677777776543
No 148
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=40.24 E-value=79 Score=31.78 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=48.1
Q ss_pred cHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHhHHHHHHHhcc
Q 001793 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGG 674 (1012)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~L~~~L~~-~~~~~~~~~L~~L~~~~k 674 (1012)
-+..+..|.+++.. +|....-.|+.||..+.+.+...|..++ ++|.+++.. .++.+...+|..+..|+.
T Consensus 35 ~k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 35666677776642 2222345678889999999988888764 566666665 344567778888888875
Q ss_pred chH
Q 001793 675 TIR 677 (1012)
Q Consensus 675 ~~~ 677 (1012)
.++
T Consensus 111 ~f~ 113 (144)
T cd03568 111 EFK 113 (144)
T ss_pred HhC
Confidence 543
No 149
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=38.55 E-value=80 Score=29.19 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 001793 355 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1012)
Q Consensus 355 DekVR~aaV~~i~~la~~~~~~v~~---~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~ 412 (1012)
+...|.++|-++|.+....+-.||. ++|..|+....| ...||+.+=++|+..++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3567899999999888888888887 567889999997 78999999999999999873
No 150
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=37.68 E-value=54 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=24.8
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHhh
Q 001793 342 QILTALCDRLLDFDENVRKQVVAVICDVA 370 (1012)
Q Consensus 342 ~i~~~l~~rL~D~DekVR~aaV~~i~~la 370 (1012)
..++.|...|.+.|+.||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 46778888899999999999999988764
No 151
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=37.18 E-value=3.1e+02 Score=26.92 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.3
Q ss_pred HHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 001793 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 400 (1012)
Q Consensus 329 ~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~-----~v~~~~l~~l~eR~rDK---k~~VR~~A 400 (1012)
+++.+.+ ....+.+.+|.+|+...+..|.+-|+..+..+....-. ..+.+.+..+...+.++ ...||+.+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 4444443 34679999999999999999999999998877654422 22446666666666654 46899998
Q ss_pred HHHHHHHHHHh
Q 001793 401 MERLADIFRGC 411 (1012)
Q Consensus 401 i~~L~~lY~~~ 411 (1012)
+..+..-+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88777655543
No 152
>PF04867 DUF643: Protein of unknown function (DUF643); InterPro: IPR006951 These are proteins of unknown function found in Borrelia burgdorferi (Lyme disease spirochete)
Probab=36.72 E-value=3.3e+02 Score=25.59 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=55.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhcCCCcHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHH
Q 001793 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYL---SLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILD 544 (1012)
Q Consensus 468 l~~l~~~lD~~~~ka~~~il~~k~~l~~~~~~~l---~~~~~~~~~~~~~~~~kl~~~i~~Ls~~fpd~~ka~~~l~kf~ 544 (1012)
...+|..|++..++....+-.-.+--...=+++. +..+++. .|.-+.|.-+-.-+-+|.| +|-
T Consensus 4 isdFYdnL~~~tKKei~kLY~t~Q~TleqKrqiYs~y~~~Qeyk--------rKtGKSi~eiind~l~p~k------~fI 69 (114)
T PF04867_consen 4 ISDFYDNLSKETKKEINKLYGTDQLTLEQKRQIYSAYEAIQEYK--------RKTGKSINEIINDILDPAK------KFI 69 (114)
T ss_pred HhHHHhccCHhHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHH--------HhhcccHHHHHHHHhhHHH------HHH
Confidence 4578888998888887776544332222222222 2223322 2222223333333345655 333
Q ss_pred h--hccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhcCCC
Q 001793 545 Q--LKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKH 583 (1012)
Q Consensus 545 ~--l~D~r~~~ll~~~~~~~~~~~~~~~a~~ellkkl~~~~ 583 (1012)
+ ++|..+-+-.+..-+...||.--....++-+.|+|...
T Consensus 70 kdvLKdk~li~kykn~kn~k~D~syKegmLekCL~klGE~~ 110 (114)
T PF04867_consen 70 KDVLKDKYLIKKYKNSKNMKFDFSYKEGMLEKCLEKLGEDK 110 (114)
T ss_pred HHHHhhhHHHHHHhccccceeechHhHhHHHHHHHHhcccc
Confidence 3 67776666666555555566544456788888998764
No 153
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=36.53 E-value=5.1e+02 Score=33.11 Aligned_cols=114 Identities=25% Similarity=0.241 Sum_probs=64.7
Q ss_pred HHHHHhhhcccccHhHH------HHHHHHHHhhccchhhhhHHHHHHHHHHHHhhC---CcCcc-ccHHHHHHHHhhccc
Q 001793 590 STLSMKCSYLLFNKEHV------KEILLEVAAQKSSANAQFMQSCMDILGILARFS---PLLLG-GTEEELVNLLKEENE 659 (1012)
Q Consensus 590 ~~Ll~R~s~~i~n~s~V------~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~---P~lf~-~~~~~L~~~L~~~~~ 659 (1012)
-.++.|.|..--|++.+ +.|.+.+. .++......+.++|-++|... +.+-+ |.+..|+.+|.+++
T Consensus 311 v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~----s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~- 385 (708)
T PF05804_consen 311 VTFLKKLSIFKENKDEMAESGIVEKLLKLLP----SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN- 385 (708)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc-
Confidence 34555555555555543 44555432 233346677888888887532 22222 23588999987643
Q ss_pred cchHhHHHHHHHhccc--hHhhhhhccchHHHHHHHHhhcCC-hHHHHHHHHHHH
Q 001793 660 IIKEGILHVLAKAGGT--IREQLAATSSSVDLLLERLCLEGS-RRQAKYAVHALA 711 (1012)
Q Consensus 660 ~~~~~~L~~L~~~~k~--~~~~~~~~~~~~~~~L~~la~~Gt-p~~AK~Av~~L~ 711 (1012)
....++.+||+++-. .+..+...+ -++.+.++-..|+ ++..+-++.++.
T Consensus 386 -~~~val~iLy~LS~dd~~r~~f~~Td--cIp~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 386 -FREVALKILYNLSMDDEARSMFAYTD--CIPQLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred -hHHHHHHHHHHhccCHhhHHHHhhcc--hHHHHHHHHHhCCCccccHHHHHHHH
Confidence 345689999988743 233344333 4677777766665 444444444443
No 154
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=36.04 E-value=2.3e+02 Score=29.56 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=54.5
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhHHHHh---cCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh
Q 001793 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1012)
Q Consensus 304 ~~~~fL~R~~D~s~~VR~~~v~~~~~il~---~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~ 373 (1012)
-|...|.-.-+.+..||...++...-++. .|| .+.++.|....-|+++.||..|.+...++..+.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 47788888899999999999999998885 456 378899999999999999999988887765443
No 155
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=35.89 E-value=9.3e+02 Score=29.79 Aligned_cols=187 Identities=16% Similarity=0.029 Sum_probs=114.0
Q ss_pred HHHHHHhhCchhhhhhhhhhhccccCC-ChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 001793 248 VIYDVYRCSPQILSGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1012)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL~se-~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~ 326 (1012)
..--+.+.--+...+.+|-.|+.|.+. +.-.|-..+-+-|-. +.+....-..-...-..++.-..=.+++||.....+
T Consensus 41 ~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~-a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~ 119 (569)
T KOG1242|consen 41 GEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTL-AFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTC 119 (569)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHH-HHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344456666777888889999988876 456666666666643 221100111112234467777788999999999999
Q ss_pred hHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh--cCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 001793 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1012)
Q Consensus 327 ~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~--~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L 404 (1012)
.+....+... ....++.+-+.+.+.=++-.=|..+-..+..+.... -+..+...+.++..-.+|||..-|++ ...+
T Consensus 120 l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~~ 197 (569)
T KOG1242|consen 120 LPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AALL 197 (569)
T ss_pred hhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHHH
Confidence 8886554332 223466666666666666666777666666554422 23446678899999999999998888 3333
Q ss_pred HHH-HHHhhhhccCCCcchhhcccchHHHHhhhhccCCC
Q 001793 405 ADI-FRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1012)
Q Consensus 405 ~~l-Y~~~~~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~ 442 (1012)
+-. +....+ +....-+-.+-..||.++++....
T Consensus 198 a~~~~~~~Lg-----~~~EPyiv~~lp~il~~~~d~~~~ 231 (569)
T KOG1242|consen 198 AFEAAQGNLG-----PPFEPYIVPILPSILTNFGDKINK 231 (569)
T ss_pred HHHHHHHhcC-----CCCCchHHhhHHHHHHHhhccchh
Confidence 332 222222 211122344445667778776533
No 156
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=1e+02 Score=38.03 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=45.5
Q ss_pred HHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh
Q 001793 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1012)
Q Consensus 321 ~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~ 373 (1012)
..+++++-.++...|+......++..+-....|++.-||...|.+|..+...+
T Consensus 303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence 46788888888888887777899999999999999999999999998776543
No 157
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=35.21 E-value=3.9e+02 Score=30.78 Aligned_cols=137 Identities=20% Similarity=0.290 Sum_probs=0.0
Q ss_pred hhhhhccccCCChHHHHHHHHHHHHhhcCCCCC-----hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC
Q 001793 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1012)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-----~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~-~~~ 337 (1012)
+|+|...|-|+|.+.-+.||--+-+++|...+. ...---+-|-+|+. ++--.|.++-..-..+| .|+
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChh-------HHHHHHHHHcCCchhHHHHHHHHHHHHhh---------------------hhhcCCCCHHHHH----HH
Q 001793 338 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVA---------------------CHALNSIPVETVK----LV 385 (1012)
Q Consensus 338 ~~~~-------~i~~~l~~rL~D~DekVR~aaV~~i~~la---------------------~~~~~~v~~~~l~----~l 385 (1012)
.-.+ .-++-+...|.++++.||-++|=+++.+| ...-+....++++ ++
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 001793 386 AERLRDKSV----LVKRYTMERLADI 407 (1012)
Q Consensus 386 ~eR~rDKk~----~VR~~Ai~~L~~l 407 (1012)
...+|-|++ ++=..|+-.|+++
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 158
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=35.13 E-value=1.4e+02 Score=34.99 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.6
Q ss_pred hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhcccCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 001793 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 337 (1012)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~-~~~fL~R~~D~s~---~VR~~~v~~~~~il~~~~~~- 337 (1012)
.++.+..-|.+++..+|..|-+.+--+++++. +.+..-.+ -..|+-|.-|++- .=|.+..+.+..++.-+...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 44444445667789999999999999998763 22211111 2345666665543 34888888888887652211
Q ss_pred CChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC
Q 001793 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1012)
Q Consensus 338 ~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~ 376 (1012)
..-.-++.++....-++||+.|..+++.+|+++..+++.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 122467788888888899999999999999999887663
No 159
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=35.11 E-value=1.9e+02 Score=33.12 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhh--------hcHHHHHHHHhcccCCCh---------hHH
Q 001793 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV---------AVR 320 (1012)
Q Consensus 258 ~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~--------~~~~~~~~fL~R~~D~s~---------~VR 320 (1012)
.+|.+=+..|+..|.+........+.+++..|.+-.|...++ +.+.+=+-.--|..+... +||
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Q ss_pred HHHHHHhHHHHhcCCC---------CCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhcc
Q 001793 321 MSVLEHVKSCLLTDPS---------RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRD 391 (1012)
Q Consensus 321 ~~~v~~~~~il~~~~~---------~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rD 391 (1012)
..++++.-.++...+. +....-+.+++.+ |+.+-|+.- |+++.+++-+
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~~Vl~ 188 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKDKVLK 188 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHHHhcc
Q ss_pred CChhHHH---------HHHHHHHHHHH
Q 001793 392 KSVLVKR---------YTMERLADIFR 409 (1012)
Q Consensus 392 Kk~~VR~---------~Ai~~L~~lY~ 409 (1012)
-+ .|.+ .++..|+.+|.
T Consensus 189 ~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 189 DS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred CC-CCChhhhhhhcCHHHHHHHHHHhc
No 160
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=35.09 E-value=1.3e+03 Score=31.21 Aligned_cols=124 Identities=10% Similarity=0.036 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-CChhHHHHHHHHHcCCchhH
Q 001793 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDEN 357 (1012)
Q Consensus 279 R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~-~~~~~i~~~l~~rL~D~Dek 357 (1012)
+..+.+.|-.++- .+++++...+.|..-.++.|-..+-.....++..++.. ....+++.-..-++.|++..
T Consensus 487 ~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~e 558 (1120)
T PF14228_consen 487 HSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSE 558 (1120)
T ss_pred HHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHH
Confidence 3455555554443 44678888888888888888777777777777655432 23457777777788999999
Q ss_pred HHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 358 VRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 358 VR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
||..|++-+..+....+..-..+-.....+.+.+|-+.|-+.+...+++-...
T Consensus 559 IR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~ 611 (1120)
T PF14228_consen 559 IRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK 611 (1120)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH
Confidence 99998888876665444322211122233556666666666666555555544
No 161
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.07 E-value=1.1e+03 Score=30.18 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=96.1
Q ss_pred HHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 001793 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1012)
Q Consensus 246 h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~ 325 (1012)
|.-+..--+.-|++=.-.++.+-..-..+++.+|..|.++.|.+=- ..--.-++..-++--+|.+|.||...+-
T Consensus 70 yLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v------~~i~ey~~~Pl~~~l~d~~~yvRktaa~ 143 (734)
T KOG1061|consen 70 YLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRV------DKITEYLCDPLLKCLKDDDPYVRKTAAV 143 (734)
T ss_pred HHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEee------hHHHHHHHHHHHHhccCCChhHHHHHHH
Confidence 4444444566888888889999999999999999999999884422 2222446777888889999999999988
Q ss_pred HhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcC
Q 001793 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN 375 (1012)
Q Consensus 326 ~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~ 375 (1012)
++...-.-+++......+++.|..-+-|+|..|=..|+.++.++...+.+
T Consensus 144 ~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 144 CVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 88776665565444457888888889999999999999999988876554
No 162
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=33.73 E-value=4.5e+02 Score=33.17 Aligned_cols=219 Identities=17% Similarity=0.239 Sum_probs=127.0
Q ss_pred ChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC-----C----------h-----------HHHHHHHHHHHHh
Q 001793 163 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 216 (1012)
Q Consensus 163 ~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~~~-----~----------~-----------~a~~la~~v~~~~ 216 (1012)
.|+.+.+.|-|...+.=..++...+.++.-+=..|..+. + + .--+|..++|+--
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 477888888888888888888888887776654443221 0 0 2346777777665
Q ss_pred hhhhHHHHHHHHHHhhcCCC--CCCCC----cchHHHHHHHHHhhCchhhhhhhhhhhccccCCC--hHHH-HHHHHHHH
Q 001793 217 AGKLEAGIKQFLVSSMSGDS--RPGHS----HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ--LDTR-LKAVGLVG 287 (1012)
Q Consensus 217 ~~~l~~~i~~~f~~~l~~~~--~~~~~----~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~--~~~R-~~At~~lg 287 (1012)
...=.++++..|-+-+..++ .|... ...+.+|+..|.+|.|.-+-.+=|.=. ++.+ ++-| +.-++-||
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeT---K~pnD~ee~~V~HQveYLG 611 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNET---KSPNDWEESRVKHQVEYLG 611 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCC---CCCccHHHHHHHHHHHhcc
Confidence 55555666655555443322 12221 225899999999999999988777533 3332 2222 33455555
Q ss_pred Hhh--cCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHH-HHHHcCCchhHHHHHHHH
Q 001793 288 DLF--AVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA-LCDRLLDFDENVRKQVVA 364 (1012)
Q Consensus 288 ~m~--s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~-l~~rL~D~DekVR~aaV~ 364 (1012)
-== .-..+ .=.|+.+|..|+.||.=.+|.- |-.+ .+++ .+-++. |.+--+++|+= -+-
T Consensus 612 LqENiRvRRA--GfAYRr~F~kF~qRyailsp~t---~~tw---------qGD~-~~av~~il~~~~m~~~qy-QmG--- 672 (1106)
T KOG0162|consen 612 LQENIRVRRA--GFAYRRAFDKFAQRYAILSPQT---WPTW---------QGDE-KQAVEHILRDVNMPSDQY-QMG--- 672 (1106)
T ss_pred hhhheeehhh--hhHHHHHHHHHHHHheecCccc---cccc---------ccch-HHHHHHHHHhcCCChhHh-hcc---
Confidence 210 00111 2369999999999999888875 4422 1222 233333 33333444431 111
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 001793 365 VICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1012)
Q Consensus 365 ~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~ 413 (1012)
....|-.-|+.++ +.|-||||++.== ...+-+.|+.+..
T Consensus 673 -----~tkVFiKnPEsLF--~LEemRer~~d~~---A~~IQkAWRrfv~ 711 (1106)
T KOG0162|consen 673 -----VTKVFIKNPESLF--LLEEMRERKWDGM---ARRIQKAWRRFVA 711 (1106)
T ss_pred -----ceeEEecChHHHH--HHHHHHHHHhhHH---HHHHHHHHHHHHH
Confidence 1233445577776 6799999998521 2334456776654
No 163
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=32.97 E-value=4.3e+02 Score=26.96 Aligned_cols=144 Identities=19% Similarity=0.247 Sum_probs=75.8
Q ss_pred HHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCC-----hhHHHHHHH
Q 001793 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI-----VAVRMSVLE 325 (1012)
Q Consensus 251 el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s-----~~VR~~~v~ 325 (1012)
+-|.-.|++|.-.+..|..| .+..+|..|.+++| .+|+-+ |-.++..-+...+.. ....-...-
T Consensus 3 ~PY~~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lG-ilGALD-------P~~~k~~~~~~~~~~~~~~~~~~~~~~l~ 71 (160)
T PF11865_consen 3 DPYLDYPELLDILLNILKTE---QSQSIRREALRVLG-ILGALD-------PYKHKSIQKSLDSKSSENSNDESTDISLP 71 (160)
T ss_pred chHHHhHHHHHHHHHHHHhC---CCHHHHHHHHHHhh-hccccC-------cHHHhcccccCCccccccccccchhhHHh
Confidence 34667899999988888888 34999999999999 555433 222222222111111 111111110
Q ss_pred HhHHHHhcCCCCCCh--hHHHHHHHHHcCCchhHHHH-HHHHHHHHhhh-hhcCCCCH--HHHHHHHHhhccCChhHHHH
Q 001793 326 HVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRK-QVVAVICDVAC-HALNSIPV--ETVKLVAERLRDKSVLVKRY 399 (1012)
Q Consensus 326 ~~~~il~~~~~~~~~--~~i~~~l~~rL~D~DekVR~-aaV~~i~~la~-~~~~~v~~--~~l~~l~eR~rDKk~~VR~~ 399 (1012)
. ....|+.++- .-++++|.+-|.|+--.--. ++|+++..+-. .....+|. .++-.+..-+|.-..+.|+.
T Consensus 72 ~----~~~~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~ 147 (160)
T PF11865_consen 72 M----MGISPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREF 147 (160)
T ss_pred h----ccCCCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHH
Confidence 0 0011221111 23445666666665433322 45666554432 23334433 34445556666555688888
Q ss_pred HHHHHHHHHH
Q 001793 400 TMERLADIFR 409 (1012)
Q Consensus 400 Ai~~L~~lY~ 409 (1012)
-...|+.+.+
T Consensus 148 ~~~qL~~lv~ 157 (160)
T PF11865_consen 148 YFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHH
Confidence 8888888765
No 164
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=32.59 E-value=3.8e+02 Score=33.66 Aligned_cols=153 Identities=12% Similarity=0.057 Sum_probs=108.7
Q ss_pred Cchhhh-hhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-
Q 001793 256 SPQILS-GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT- 333 (1012)
Q Consensus 256 ~P~lL~-~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~- 333 (1012)
.++.+. .+.|++-.-+...|..+|..+++.+..+.+-=+-+ ..+-++-+.|=.=-.|-.+.||..-+-+.+.|=--
T Consensus 362 t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l 439 (690)
T KOG1243|consen 362 TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHL 439 (690)
T ss_pred CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeeccccccc
Confidence 444444 48899999999999999999999888776543322 44555666565555699999999888777764321
Q ss_pred CCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 334 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 334 ~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~-~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
+|+. .-.-+..++.+-+.||=..-|.++|.+++..-. .....|...++-.+.--+.|....||..|-..+-..+...
T Consensus 440 ~~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 440 AASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred chhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 1221 112345567767999999999999999885432 3444555566667777888999999999998887777653
No 165
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.58 E-value=1.1e+03 Score=29.22 Aligned_cols=142 Identities=18% Similarity=0.181 Sum_probs=111.7
Q ss_pred hhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh---cCCC
Q 001793 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPS 336 (1012)
Q Consensus 260 L~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~---~~~~ 336 (1012)
|...||.|.+-+..-++..|.-.+.-+.-+.+.|+.++..--|+.+.-..+=..|-+++||..+=....++|. +.|+
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 6678999999999999999999999999999999999988889999988889999999999887777766664 5676
Q ss_pred CCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHH
Q 001793 337 RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTM 401 (1012)
Q Consensus 337 ~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v---~~~~l~~l~eR~rDKk~-~VR~~Ai 401 (1012)
.-+..+.++-+...+.-+++..+..|+.-+.+..+.....+ -..++..+..-+-|+-. +++..|.
T Consensus 245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 53456889999999999999999999888877665333222 12345555566666665 3555443
No 166
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.61 E-value=4.5e+02 Score=30.34 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=92.2
Q ss_pred hhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHH
Q 001793 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1012)
Q Consensus 264 ip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i 343 (1012)
+|.--....+-+.+.|..|..-|-...-..+-+..=.--.-|.--++=-++.++.||.....-++.+..|||.- ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555566677888889999888766544331111111235788888889999999999999999999999941 1123
Q ss_pred HH------HHHHHcCCchhHHHHHHHHHHHHhhhhhcCC------C-CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 344 LT------ALCDRLLDFDENVRKQVVAVICDVACHALNS------I-PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 344 ~~------~l~~rL~D~DekVR~aaV~~i~~la~~~~~~------v-~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
++ -+..--.|.+..||..|.-||+.+....... + ....|..+.++- ++....+..|+..++.+-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 21 2222238999999999999999775433221 1 223344443331 13455666677777776665
Q ss_pred h
Q 001793 411 C 411 (1012)
Q Consensus 411 ~ 411 (1012)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 167
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=30.23 E-value=58 Score=24.83 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.4
Q ss_pred hhhhhhhhccccCCChHHHHHHHHHHHHhh
Q 001793 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1012)
Q Consensus 261 ~~Vip~Le~eL~se~~~~R~~At~~lg~m~ 290 (1012)
.+++|.|-.-|.+++..+|..|+-.||.+-
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 358888989999999999999999999874
No 168
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=29.18 E-value=1e+03 Score=30.79 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=107.0
Q ss_pred HHhhhcccccHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhCCcCc-c-ccHHHHHHHHhhccccchHhHHHHHH
Q 001793 593 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLL-G-GTEEELVNLLKEENEIIKEGILHVLA 670 (1012)
Q Consensus 593 l~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf-~-~~~~~L~~~L~~~~~~~~~~~L~~L~ 670 (1012)
+-|++-+.++--.||.|++++..- +--...+-+++-|+.||+.+|.-- + +.+......|.-=...+...||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448899999988999999877531 111234557788999999999532 2 22333333322111224456788888
Q ss_pred HhccchHhhhhhccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc-------hHHHHHHHHHHhhhhc--C-CCc
Q 001793 671 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK-------SLSVLYKRLVDMLEEK--T-HLP 740 (1012)
Q Consensus 671 ~~~k~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~-------~~~~l~~~l~~~l~~~--~-~~~ 740 (1012)
++.+.++..-...--.-.+.|.++=.+-+.+-.-++.-|++.+.+..... +-.+|++++..-|.-. . ...
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 88887643211111234677888888888777778878887666543211 1124444444444311 1 222
Q ss_pred h---HHHHHHHHHhhcccccccchHHHHHHHHHhhhcccccc
Q 001793 741 A---VLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKI 779 (1012)
Q Consensus 741 ~---~L~sL~~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~ 779 (1012)
+ .+--|...+-..|..|......=+..++|.+|......
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s 441 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKS 441 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcC
Confidence 2 33344455555788888754443445678898876543
No 169
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=29.03 E-value=5.7e+02 Score=29.99 Aligned_cols=122 Identities=17% Similarity=0.244 Sum_probs=81.3
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCC--c
Q 001793 18 TPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYS--D 95 (1012)
Q Consensus 18 ~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~--~ 95 (1012)
.||......+..|++|-+.+. .|+. ..+..-++.+.-.+...-++-|...-||..+.--+-.|++-+.= .+.. .
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~--~~~~-~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~-~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQ--RQNE-NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQV-GSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcC--cccc-hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccc-cCcchHH
Confidence 367777888888888877775 2322 23445556666666666666666677999888888888877651 2222 3
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccCCccHHHHHHHHHHHHhh
Q 001793 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVA 159 (1012)
Q Consensus 96 ~~lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v 159 (1012)
+++..+|.-|+.--. .-|-.+||.+||++|+.. .+++..++-++=..+
T Consensus 299 ~~l~s~lrsfvqk~l------~~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l 346 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYL------AHYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSL 346 (373)
T ss_pred HHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHH
Confidence 788888888887432 234478999999999864 455566655554444
No 170
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=29.01 E-value=1.3e+03 Score=29.48 Aligned_cols=339 Identities=14% Similarity=0.164 Sum_probs=177.2
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcc-----------h--hhhcCCCcchHHHHHHHHH
Q 001793 15 KLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQ-----------P--VLLKHQDKDVKLLVATCIC 81 (1012)
Q Consensus 15 kl~~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~-----------~--~lL~h~d~~Vr~~~acCl~ 81 (1012)
.|....++-..--+.++.+...+.+-+++. .++...+-.+.++|.. . ..|+||..+||.-.|--++
T Consensus 746 ~lg~~diderleE~lidgil~Afqeqtt~d-~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis 824 (1172)
T KOG0213|consen 746 RLGAADIDERLEERLIDGILYAFQEQTTED-SVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLIS 824 (1172)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcccch-hhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 333333433333334456666666533332 3455666666666654 2 5689999999987765544
Q ss_pred HHHhh---cCCCC----------CCCchHHHHHHHHHHHhcc------C---CCCCCCCchhhHHHHHHHHHh------h
Q 001793 82 EITRI---TAPEA----------PYSDDVLKDIFQLIVGTFS------G---LKDTGGPSFGRRVVILETLAK------Y 133 (1012)
Q Consensus 82 dilRi---~APda----------Py~~~~lkdIf~l~~~~~~------~---L~d~~~~~~~~~~~lLe~la~------v 133 (1012)
-|--+ +--+. -|=+++-.+++-+++..+. | ...|-+...++-.-||.+=.+ |
T Consensus 825 ~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~I 904 (1172)
T KOG0213|consen 825 SLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCI 904 (1172)
T ss_pred HHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHH
Confidence 44333 22111 1222222233333333222 1 122233334444555554331 1
Q ss_pred hhhhhhccCCcc-HHHHHHHHHHHHhhc--CCChhcHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCC-CCh-HHHHH
Q 001793 134 RSCVVMLDLECD-ELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRN-KND-TARRL 208 (1012)
Q Consensus 134 ks~vl~~dl~~~-~li~~lF~~~~~~v~--~~~~~~v~~~m~~Il~~vI~E~~~v~~~~ld~il~~~~~~-~~~-~a~~l 208 (1012)
...-.++|..++ -=..+--+.+|.++- ..|.+.+...-.+-+.-+=.- -=|++||+.+|++++-+ +.+ -.-.+
T Consensus 905 dLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka--IGPqdVLatLlnnLkvqeRq~RvcTtv 982 (1172)
T KOG0213|consen 905 DLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA--IGPQDVLATLLNNLKVQERQNRVCTTV 982 (1172)
T ss_pred HHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh--cCHHHHHHHHHhcchHHHHHhchhhhh
Confidence 111133454322 112334445555442 235555555555544433222 24889999999988532 111 11112
Q ss_pred HHHHHHHhhhhhHHHHHHHHHH---hhcCCCCCC----CCcchHHH-HHHHHHhhCchhhhhhhhhhhccccCCChHHHH
Q 001793 209 AMNVIEQCAGKLEAGIKQFLVS---SMSGDSRPG----HSHIDYHE-VIYDVYRCSPQILSGVVPYLTGELLTDQLDTRL 280 (1012)
Q Consensus 209 a~~v~~~~~~~l~~~i~~~f~~---~l~~~~~~~----~~~~~~h~-li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~ 280 (1012)
|-.|.-. .|.-|+= ++.+=..+. +..+++.. +.--+.+.+-+-+.+|.|.||+-|-..|...|+
T Consensus 983 aIaIVaE--------~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRq 1054 (1172)
T KOG0213|consen 983 AIAIVAE--------TCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQ 1054 (1172)
T ss_pred hhhhhhh--------hcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHH
Confidence 2222111 1111221 111100111 12234433 333466778899999999999999999999999
Q ss_pred HHHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHH
Q 001793 281 KAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVR 359 (1012)
Q Consensus 281 ~At~~lg~m~s~~-~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR 359 (1012)
.|..++..|--+. |.--....-.+.+--.--.-|.||.|=..|.++...+-..-. ..-+.+++.+-|.-|--+||
T Consensus 1055 ta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg----~~~~~~Y~~QGLFHParkVR 1130 (1172)
T KOG0213|consen 1055 TAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG----PQAMLKYCLQGLFHPARKVR 1130 (1172)
T ss_pred HHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc----hHHHHHHHHHhccCcHHHHH
Confidence 9999999887553 211111111222211223448899999999998877443222 24688999999999999999
Q ss_pred HHHHHHHHH
Q 001793 360 KQVVAVICD 368 (1012)
Q Consensus 360 ~aaV~~i~~ 368 (1012)
..-++.+..
T Consensus 1131 ~~yw~vyn~ 1139 (1172)
T KOG0213|consen 1131 KRYWTVYNS 1139 (1172)
T ss_pred HHHHHHHHh
Confidence 987776553
No 171
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=28.86 E-value=5.8e+02 Score=25.21 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCcCccccHHHHHHHHhhccccchHhHHHHHH----HhccchHhhhhhccchHHHHHHHHhhcCC
Q 001793 629 MDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLA----KAGGTIREQLAATSSSVDLLLERLCLEGS 699 (1012)
Q Consensus 629 ~~LL~~iS~~~P~lf~~~~~~L~~~L~~~~~~~~~~~L~~L~----~~~k~~~~~~~~~~~~~~~~L~~la~~Gt 699 (1012)
+++-+.|... |.-=+..++.|.+=|.+.++.+.--+|.+|- +||..+...+. +..|...|.+++....
T Consensus 27 l~icD~i~~~-~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~--~~~fl~~l~~l~~~~~ 98 (140)
T PF00790_consen 27 LEICDLINSS-PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVA--SKEFLDELVKLIKSKK 98 (140)
T ss_dssp HHHHHHHHTS-TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHT--SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHh--HHHHHHHHHHHHccCC
Confidence 3444444444 4444555666777777777665555555554 55555544443 4568888999888654
No 172
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.19 E-value=1.2e+02 Score=38.13 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=53.0
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccC
Q 001793 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDK 392 (1012)
Q Consensus 313 ~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDK 392 (1012)
+|++|-+|..=+=...-.... .+. .+-|-.-|.--..|+++.||++||.+++-+-+.+++.+ ...|......=
T Consensus 529 ~dkdpilR~~Gm~t~alAy~G--Tgn-nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~----~s~V~lLses~ 601 (929)
T KOG2062|consen 529 RDKDPILRYGGMYTLALAYVG--TGN-NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL----PSTVSLLSESY 601 (929)
T ss_pred cCCchhhhhhhHHHHHHHHhc--cCc-hhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc----hHHHHHHhhhc
Confidence 577788776533322211111 111 12333444455779999999999999987666665544 44455555556
Q ss_pred ChhHHHHHHHHHHH
Q 001793 393 SVLVKRYTMERLAD 406 (1012)
Q Consensus 393 k~~VR~~Ai~~L~~ 406 (1012)
++-||--|...||-
T Consensus 602 N~HVRyGaA~ALGI 615 (929)
T KOG2062|consen 602 NPHVRYGAAMALGI 615 (929)
T ss_pred ChhhhhhHHHHHhh
Confidence 78888877777764
No 173
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=27.99 E-value=2.4e+02 Score=27.58 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCc-hhHHHHHHHHHHHHhhhhhcCCCCHHHH------HHHHHhhccCChhHHHHHHHHHHHHHH
Q 001793 342 QILTALCDRLLDF-DENVRKQVVAVICDVACHALNSIPVETV------KLVAERLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 342 ~i~~~l~~rL~D~-DekVR~aaV~~i~~la~~~~~~v~~~~l------~~l~eR~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
++++.|.+.|..+ |..+-.-||.-|++++...+.. -.++ ..+-+.|....+.||.+|+.++.++-.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g--r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG--RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG--HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH--HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5666666666333 4444444555555555443331 1222 245677888999999999999988754
No 174
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.39 E-value=2.5e+02 Score=28.95 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=45.9
Q ss_pred hHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 001793 318 AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1012)
Q Consensus 318 ~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR 397 (1012)
..|..|+-.++.+.. .....++++.+...+.|.+.-||.++--++.+++.. -|..++..+.....+......
T Consensus 121 ~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t~ 192 (197)
T cd06561 121 VRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLTL 192 (197)
T ss_pred HHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHHH
Confidence 455666666655443 112456777777778888888888888888777666 345555555554444444444
Q ss_pred HHH
Q 001793 398 RYT 400 (1012)
Q Consensus 398 ~~A 400 (1012)
++|
T Consensus 193 r~a 195 (197)
T cd06561 193 RYA 195 (197)
T ss_pred HHH
Confidence 444
No 175
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=26.61 E-value=3.8e+02 Score=33.41 Aligned_cols=174 Identities=13% Similarity=0.086 Sum_probs=101.4
Q ss_pred hhccccCCChHHHHHHHHHHHHhhcC---CCCChhhhcHHHHHH--HHhcccCCChhHHHHHHHHhHH------HHhcCC
Q 001793 267 LTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFSE--FLKRLTDRIVAVRMSVLEHVKS------CLLTDP 335 (1012)
Q Consensus 267 Le~eL~se~~~~R~~At~~lg~m~s~---~~~~~~~~~~~~~~~--fL~R~~D~s~~VR~~~v~~~~~------il~~~~ 335 (1012)
...+|.+-++..|..+..-.--|--. .+....++.-.++.. -.-..-=++..+|.+|..+-+. +|.+-+
T Consensus 336 ~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~ 415 (678)
T KOG1293|consen 336 ICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL 415 (678)
T ss_pred HHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567777888887665432211110 011122222222221 1111223456788888776554 455555
Q ss_pred CCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHH-----HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET-----VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 336 ~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~-----l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
.+ .++...|-+-++||+-.|-..+.-++|.+.. .|+..-... ++.+..-+.|+-+.+|+.+...| |+.
T Consensus 416 ~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L---r~l 488 (678)
T KOG1293|consen 416 KR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL---RHL 488 (678)
T ss_pred cc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH---HHH
Confidence 43 3688888888999999999999999997643 233333333 55788999999999998777665 333
Q ss_pred hhhhccCCCcchhhcccchHHHHhhhhccCCCchhHHHHh
Q 001793 411 CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVL 450 (1012)
Q Consensus 411 ~~~~~~~~~~~~~~~~wIP~~iL~~~y~~d~~~~~ve~vl 450 (1012)
.+..- ...-..-+.-||...+.+ |+||++...-|+++
T Consensus 489 ~f~~d--e~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~f 525 (678)
T KOG1293|consen 489 MFNCD--EEEKFQLLAKIPANLILD-LINDPDWAVQEQCF 525 (678)
T ss_pred Hhcch--HHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHHH
Confidence 33211 001112367888888865 57886654445543
No 176
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.57 E-value=1.1e+03 Score=27.63 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=104.4
Q ss_pred hhhhhhhccccCCChHHHHHHHHHHHHhhcCCC--CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC
Q 001793 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD 339 (1012)
Q Consensus 262 ~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~--~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~ 339 (1012)
.-+|.|-.-|.+.|.++|--+|..+|.+--+.. --+++.-|.+-.+...=..|-|+.|.++..-+.+. |.+.. +.
T Consensus 208 G~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~Y 284 (550)
T KOG4224|consen 208 GGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--EY 284 (550)
T ss_pred CCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--hh
Confidence 467888888999999999999999997755431 23677889999999999999999998887766654 33222 22
Q ss_pred hhHHH-----HHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 001793 340 APQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDKSVL-VKRYTMERLADIFR 409 (1012)
Q Consensus 340 ~~~i~-----~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~---~~~l~~l~eR~rDKk~~-VR~~Ai~~L~~lY~ 409 (1012)
..+|+ +.+-+.|.|+--+.=++.|..|..++.+.+..++ .-.++-+...++-+..+ +...|..+|-++-.
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 33454 4677778888888888999999888887776553 33455555555555544 77777777655544
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.52 E-value=4e+02 Score=35.12 Aligned_cols=136 Identities=15% Similarity=0.150 Sum_probs=82.0
Q ss_pred CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 001793 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1012)
Q Consensus 256 ~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~ 334 (1012)
.++++.--+.+|++. .+.-.|+=..-.||++..+-..+ +.-..-......+.=..|..|+||.+.|-+.+.+|.+-
T Consensus 597 ~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 344444333333332 26889999999999999875321 22223334445555668999999999999999988764
Q ss_pred CCCCChhHHHHHHHHHcCC-chhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 001793 335 PSRADAPQILTALCDRLLD-FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1012)
Q Consensus 335 ~~~~~~~~i~~~l~~rL~D-~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~ 411 (1012)
.+.-++ -....+...| +|++++.+- .....+-.+..++.|=.+-||+|-...|+.+-..|
T Consensus 674 ~d~fde---~~~~~~~~~~l~~~~~~~E~--------------~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~ 734 (1387)
T KOG1517|consen 674 SDNFDE---QTLVVEEEIDLDDERTSIED--------------LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGY 734 (1387)
T ss_pred ccccch---hhhhhhhhhcchhhhhhHHH--------------HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 321111 1112233444 444444431 11111235678889999999999877777765544
No 178
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=26.51 E-value=1.9e+02 Score=29.03 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=47.0
Q ss_pred cHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh-ccccchHhHHHHHHHhcc
Q 001793 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE-ENEIIKEGILHVLAKAGG 674 (1012)
Q Consensus 602 n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~L~~~L~~-~~~~~~~~~L~~L~~~~k 674 (1012)
-++.+..|-+++.. +|....-.|..||..+.+.+...|..++ ++|.+++.. .++.+...+|..+..|+.
T Consensus 39 ~k~a~ral~krl~~----~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLS----KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcC----CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 46677777776642 2222345678899999998888888764 566666653 233466778888888875
Q ss_pred ch
Q 001793 675 TI 676 (1012)
Q Consensus 675 ~~ 676 (1012)
.+
T Consensus 115 ~f 116 (142)
T cd03569 115 AF 116 (142)
T ss_pred Hh
Confidence 54
No 179
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=26.48 E-value=1.2e+03 Score=28.64 Aligned_cols=189 Identities=19% Similarity=0.231 Sum_probs=0.0
Q ss_pred hccCCccHHHHHHHHHHHHhhc---------CCChhcHHHHHHHHHHHHhcccccccH---HHHHHHHHhhcCCCCh---
Q 001793 139 MLDLECDELVNEMYSTFFAVAS---------DDHPESVLSSMQTIMIVLLEESEDIQE---DLLVILLSALGRNKND--- 203 (1012)
Q Consensus 139 ~~dl~~~~li~~lF~~~~~~v~---------~~~~~~v~~~m~~Il~~vI~E~~~v~~---~~ld~il~~~~~~~~~--- 203 (1012)
++.++..|++.+|=++|-.+-- .+..+.|......=+...|.|.+++.. +++|++=..+..+-..
T Consensus 20 LFsV~d~Di~dD~te~l~~ik~I~s~~dY~~NnnDQSVVEIcVtRit~aIRET~siE~YaAaLVDlLd~cL~hnl~p~g~ 99 (851)
T KOG3723|consen 20 LFSVDDSDIEDDLTEALEQIKIISSSSDYQTNNNDQSVVEICVTRITTAIRETESIEKYAAALVDLLDSCLEHNLRPFGK 99 (851)
T ss_pred cccCChHHHHhHHHHHHHHHHHhhcCcccccCCCcchhhhhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccCccCCC
Q ss_pred -----HHHHHHHHHH-------------------------------------------HHhhhhhHHHHHHHHHHhhcCC
Q 001793 204 -----TARRLAMNVI-------------------------------------------EQCAGKLEAGIKQFLVSSMSGD 235 (1012)
Q Consensus 204 -----~a~~la~~v~-------------------------------------------~~~~~~l~~~i~~~f~~~l~~~ 235 (1012)
|-.++|.+|+ ..-+|-|+++--.-..+++.|
T Consensus 100 kded~PHaKIAsDi~SSiFLny~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSg- 178 (851)
T KOG3723|consen 100 KDEDTPHAKIASDIMSSIFLNYNKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSG- 178 (851)
T ss_pred CCCCCchhhHHHHHHHHHHHhcCCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhcc-
Q ss_pred CCCCCCcchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCC-------------CCChhhhcH
Q 001793 236 SRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-------------GSANNEQFH 302 (1012)
Q Consensus 236 ~~~~~~~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~-------------~~~~~~~~~ 302 (1012)
..-...++..+++..|+.+.+-+|.+...|.+-++.. ..++..+--+++.+ |+....+|-
T Consensus 179 ------n~~LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~-~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds~~~ 251 (851)
T KOG3723|consen 179 ------NTMLLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQ-YHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDSTHN 251 (851)
T ss_pred ------chHHHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHhccccch
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 001793 303 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1012)
Q Consensus 303 ~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~ 335 (1012)
+.-..-|+...-.+|..=....++...+...+|
T Consensus 252 ~i~~~Ilk~ia~~~pv~l~~~~E~l~e~~~~~p 284 (851)
T KOG3723|consen 252 DIILNILKEIAVYEPVALNSFLEMLKEIGERFP 284 (851)
T ss_pred hHHHHHHHHHHhcCccchhhHHHHHHHHHHhCC
No 180
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=26.00 E-value=9.6e+02 Score=26.85 Aligned_cols=61 Identities=25% Similarity=0.292 Sum_probs=36.1
Q ss_pred HHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHhh
Q 001793 345 TALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS--VLVKRYTMERLADIFRGCC 412 (1012)
Q Consensus 345 ~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~l~~l~eR~rDKk--~~VR~~Ai~~L~~lY~~~~ 412 (1012)
.+|.+-+.|...-.|.+|--+++++- +..-+-.+.+.++|.+ +=||.+|...||.+=..-+
T Consensus 190 ~al~~~l~~~SalfrhEvAfVfGQl~-------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~ 252 (289)
T KOG0567|consen 190 NALIDGLADDSALFRHEVAFVFGQLQ-------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIADEDC 252 (289)
T ss_pred HHHHHhcccchHHHHHHHHHHHhhcc-------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHH
Confidence 33444444444444444433333321 2333556778888887 5799999999998766543
No 181
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=25.96 E-value=2.4e+02 Score=24.16 Aligned_cols=59 Identities=14% Similarity=0.158 Sum_probs=42.4
Q ss_pred hHHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHhhcCCCCchhhHHhHHH-HHHHhcchhhhcC
Q 001793 4 KLEQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQP-FLNAIVQPVLLKH 67 (1012)
Q Consensus 4 ~~~~~~~~~g~kl~~~~~~~~~Ll~rL~~l~~~L~~~~Q~~~~~~~~~l~~-~~~~L~~~~lL~h 67 (1012)
-+++-|..+|.+.--.|.+.+| +.++-++.+.-.+-+.+ -.++++. +..-|.||.||-.
T Consensus 2 ~a~~~l~~Fa~rAfRRp~~~~e-~~~~~~~~~~~~~~g~~----~~~a~~~~l~aiL~SP~FLY~ 61 (64)
T PF07637_consen 2 CAREILRRFARRAFRRPLTDEE-VDRYLALYDSARAQGED----FEEALKEALQAILCSPSFLYR 61 (64)
T ss_pred hHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHcCcchhcc
Confidence 4678899999999999999999 78887777766554333 3355544 4444679988743
No 182
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=25.44 E-value=3.9e+02 Score=28.20 Aligned_cols=122 Identities=11% Similarity=0.122 Sum_probs=74.6
Q ss_pred hhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCCchH-------HHHHHHHHHHhccCCCCCCCCc
Q 001793 47 SILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDV-------LKDIFQLIVGTFSGLKDTGGPS 119 (1012)
Q Consensus 47 ~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~~~~-------lkdIf~l~~~~~~~L~d~~~~~ 119 (1012)
.|-...+.++..|+...+=.+....-++++++||+-|--==.||.-|+.+. --.||..+-+.+.. .
T Consensus 30 ~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~E~~~----~--- 102 (200)
T cd00280 30 EDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDEELTPLESALMVLESIEKEFSL----P--- 102 (200)
T ss_pred HHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHHHcCCCCCCccCCCCCcChHHHHHHHHHHHHHhcCC----c---
Confidence 466778888888887777666777788999999886655556899997543 34556555554431 1
Q ss_pred hhhHHHHHHHHHhhhhhhhhccCCccHHHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhcccc
Q 001793 120 FGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE 183 (1012)
Q Consensus 120 ~~~~~~lLe~la~vks~vl~~dl~~~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~E~~ 183 (1012)
..-+..++++-.+...++|..-.--+.-.++++.+|+ .++.++. .. -|..+|.+-+
T Consensus 103 -~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~--d~~~~~~-r~----kL~~II~~Kd 158 (200)
T cd00280 103 -ETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS--DPESQKL-RM----KLLMIIREKD 158 (200)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc--CCCchhH-HH----HHHHHHHccc
Confidence 1224455555566666666554334566666677666 2333222 32 3445566643
No 183
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=25.39 E-value=1.5e+03 Score=30.35 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHhhhcccccHhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhC
Q 001793 564 SFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS 639 (1012)
Q Consensus 564 ~~~~~~~a~~ellkkl~~----~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~ 639 (1012)
|+.-.+...+.+...+++ .+...--++.+..|.|+ .+..-+-+++.+.+. + |..+|+.+
T Consensus 528 D~SYaW~li~~~~~~mQ~~Ik~~P~~v~~lRa~FlKLaS------~L~~pl~Ri~Q~~s~----------D-l~sVS~yY 590 (1081)
T PF10266_consen 528 DFSYAWELIDSYTPIMQQRIKKDPSTVIKLRATFLKLAS------ALELPLLRINQAESP----------D-LSSVSQYY 590 (1081)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH------HhccHHHHhcccccc----------h-HHHHHHHH
Confidence 333344455555555443 22222236666666653 333334445443211 1 66677777
Q ss_pred CcCccccHHHHHHHH
Q 001793 640 PLLLGGTEEELVNLL 654 (1012)
Q Consensus 640 P~lf~~~~~~L~~~L 654 (1012)
..-+-.+++...+++
T Consensus 591 S~eLv~~vR~VLqiI 605 (1081)
T PF10266_consen 591 SSELVKYVRKVLQII 605 (1081)
T ss_pred HHHHHHHHHHHHHHh
Confidence 766666666665554
No 184
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.07 E-value=4e+02 Score=33.98 Aligned_cols=129 Identities=16% Similarity=0.210 Sum_probs=89.6
Q ss_pred cchHHHHHHHHHhhCchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHH
Q 001793 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1012)
Q Consensus 242 ~~~~h~li~el~~~~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~ 321 (1012)
..+.-..|-+.+--.|+.+..|+..+|+ .|-.+|+-|++++.-+++..+.
T Consensus 106 sdd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~-------------------------- 155 (970)
T KOG0946|consen 106 SDDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPT-------------------------- 155 (970)
T ss_pred hhHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCH--------------------------
Confidence 3355667778888889999999988887 8999999999999999988662
Q ss_pred HHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCC---CC-----HHHHHHHHHhhccCC
Q 001793 322 SVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS---IP-----VETVKLVAERLRDKS 393 (1012)
Q Consensus 322 ~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~---v~-----~~~l~~l~eR~rDKk 393 (1012)
.+.+++..+|. =+..+.+-|.|+.|-||-+++--++++...+.+. |- +.++..+-+-..=.-
T Consensus 156 ----e~q~~ll~~P~------gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dG 225 (970)
T KOG0946|consen 156 ----ELQDALLVSPM------GISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDG 225 (970)
T ss_pred ----HHHHHHHHCch------hHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 23456777774 2445667889999999999999999876544321 11 112222222221112
Q ss_pred hhHHHHHHHHHHHHHHH
Q 001793 394 VLVKRYTMERLADIFRG 410 (1012)
Q Consensus 394 ~~VR~~Ai~~L~~lY~~ 410 (1012)
--|=.+|+..|-++-+.
T Consensus 226 gIVveDCL~ll~NLLK~ 242 (970)
T KOG0946|consen 226 GIVVEDCLILLNNLLKN 242 (970)
T ss_pred cchHHHHHHHHHHHHhh
Confidence 35777899999888775
No 185
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=24.70 E-value=9.1e+02 Score=26.11 Aligned_cols=70 Identities=21% Similarity=0.196 Sum_probs=47.5
Q ss_pred HHHHHHhhCchhhhhhhhhhhccc-cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcc-cCCChhHHH
Q 001793 248 VIYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRL-TDRIVAVRM 321 (1012)
Q Consensus 248 li~el~~~~P~lL~~Vip~Le~eL-~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~-~D~s~~VR~ 321 (1012)
-+..+-+..|+-=..+++.|..=| ..+++..+..|.+.+.-+..+. +-.+..+|+.-.+++ .|..|.|=.
T Consensus 107 s~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l~~~~rp~v~~ 178 (234)
T PF12530_consen 107 SIRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKLSLDYRPLVLK 178 (234)
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhcCCccchHHHH
Confidence 344444555554444555566666 7899999999999999999543 456678999988888 344444443
No 186
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=24.59 E-value=1.7e+03 Score=29.11 Aligned_cols=104 Identities=15% Similarity=0.138 Sum_probs=79.4
Q ss_pred HHHHhcccCCChhHHHHHHHHhHHHHhcCC-C--CCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh---cCCCCH
Q 001793 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-S--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---LNSIPV 379 (1012)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~v~~~~~il~~~~-~--~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~---~~~v~~ 379 (1012)
..|...+.|+.-.=|.+-++....++.+.. . -.....+..++.-++.|+.-.|=.-+...+..+|..- +.....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 367788889999999999999999998766 1 1223467778899999999999999988888888633 333344
Q ss_pred HHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 001793 380 ETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 380 ~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
.++-.+.+|+.|||..+|..+...+=.+-+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n 365 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN 365 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh
Confidence 556788999999999999876655444443
No 187
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=24.56 E-value=2.4e+02 Score=28.17 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHhhCCcCccccH------HHHHHHHhh------ccccchHhHHHHHH
Q 001793 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE------EELVNLLKE------ENEIIKEGILHVLA 670 (1012)
Q Consensus 603 ~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~------~~L~~~L~~------~~~~~~~~~L~~L~ 670 (1012)
++.+..|.+++.. +|..-.-.|+.||..+.+.+-.-|..++ .+|++++.. .++.+...+|..+.
T Consensus 37 k~a~rai~krl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 37 QLAVRLLAHKIQS----PQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 4455555555431 1212234566777777777777776553 567777753 12346677888888
Q ss_pred HhccchH
Q 001793 671 KAGGTIR 677 (1012)
Q Consensus 671 ~~~k~~~ 677 (1012)
.|+..++
T Consensus 113 ~W~~~f~ 119 (139)
T cd03567 113 SWTLELP 119 (139)
T ss_pred HHHHHhc
Confidence 8875543
No 188
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=23.99 E-value=1.7e+02 Score=30.74 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=53.8
Q ss_pred HhhCchhhh--hhhhhhhccccCCChHHHHHHHHHHHHhhcC-CCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHH
Q 001793 253 YRCSPQILS--GVVPYLTGELLTDQLDTRLKAVGLVGDLFAV-PGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1012)
Q Consensus 253 ~~~~P~lL~--~Vip~Le~eL~se~~~~R~~At~~lg~m~s~-~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~ 329 (1012)
|++.|+-|- ..+|.+=+-|+-.+.+.|..|.+.+-+|+.. .+..+.-.=|.+-..--.-.+-++++|....++....
T Consensus 27 W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~ 106 (183)
T PF10274_consen 27 WKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQ 106 (183)
T ss_pred EecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 777777764 4889999999999999999999999999987 2222222234444444444444555555555555555
Q ss_pred HHhcC
Q 001793 330 CLLTD 334 (1012)
Q Consensus 330 il~~~ 334 (1012)
++.++
T Consensus 107 Lv~~~ 111 (183)
T PF10274_consen 107 LVTSS 111 (183)
T ss_pred HHHhh
Confidence 44433
No 189
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.68 E-value=1.1e+02 Score=29.97 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=44.7
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCHHH
Q 001793 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET 381 (1012)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~~~ 381 (1012)
..+=.-.++|.+|+++-|..++++...+++..-+ .+....+++.+ .+|+. +..+...|+++
T Consensus 37 ~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-----~~f~~~~~~~~---------~~Ik~-----~~~f~g~~Dp~ 97 (122)
T cd03572 37 QELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-----SDFKRELQRNS---------AQIRE-----CANYKGPPDPL 97 (122)
T ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-----HHHHHHHHHhH---------HHHHH-----HHHcCCCCCcc
Confidence 3444455677777777777777777776555322 13443443332 11222 22333322221
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 001793 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1012)
Q Consensus 382 l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~ 410 (1012)
...|-...||.+|-+.+.-||..
T Consensus 98 ------~Gd~~~~~VR~~A~El~~~if~~ 120 (122)
T cd03572 98 ------KGDSLNEKVREEAQELIKAIFSY 120 (122)
T ss_pred ------cCcchhHHHHHHHHHHHHHHhcc
Confidence 22333456888888888888863
No 190
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=23.54 E-value=1.1e+03 Score=30.97 Aligned_cols=194 Identities=18% Similarity=0.202 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCchhhHHHHHHHHHhhhhhhhhccCCc--cHHHHHHHHHHHHhhcCCChhcHHHHHHHHH
Q 001793 98 LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLEC--DELVNEMYSTFFAVASDDHPESVLSSMQTIM 175 (1012)
Q Consensus 98 lkdIf~l~~~~~~~L~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~--~~li~~lF~~~~~~v~~~~~~~v~~~m~~Il 175 (1012)
|..-|.+.-.-|.+-+|...|.|.-.-+.|+- -|+|+-+.. ..+..+ + -+-+++......+|-
T Consensus 1036 L~~~~~f~~~vFs~sgd~g~~~f~~s~r~l~~------Sv~~~~i~~~~~l~~LR----~-----~n~~~~~~~~vSdik 1100 (1525)
T COG5219 1036 LGENHHFVEKVFSLSGDLGLPSFRCSDRKLEQ------SVLLERIGPRAILYVLR----K-----HNVPPQFVASVSDIK 1100 (1525)
T ss_pred HhhhhhhhhhheecccccCccHHHHHHHHHHh------hHhhccCCchHHHHHHH----H-----ccCcHHHHHhhccch
Confidence 44445555556666666666666555555542 122232221 111111 1 123455555556666
Q ss_pred HHHhcccccccHHHHHHHHHhhcCCCCh----HHHHHHHHHHHHhhhhhHHHHHHHHH---HhhcCCCCCCCCcchHHHH
Q 001793 176 IVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLV---SSMSGDSRPGHSHIDYHEV 248 (1012)
Q Consensus 176 ~~vI~E~~~v~~~~ld~il~~~~~~~~~----~a~~la~~v~~~~~~~l~~~i~~~f~---~~l~~~~~~~~~~~~~h~l 248 (1012)
-.+.+..|++..-+++.++-++...+++ .-++.--.+++.|.-|.-+. ||+. +....++ +
T Consensus 1101 d~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~d-----------~ 1167 (1525)
T COG5219 1101 DCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNADD-----------E 1167 (1525)
T ss_pred hhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCchh-----------H
Confidence 5666666789999999888888654443 33455555555554433222 4443 2221111 1
Q ss_pred HHHHHhhCchhhhhhhhhhhccccCCCh--HH-----------HHHHHHHHHHhhcCCCCChh------------hhcHH
Q 001793 249 IYDVYRCSPQILSGVVPYLTGELLTDQL--DT-----------RLKAVGLVGDLFAVPGSANN------------EQFHS 303 (1012)
Q Consensus 249 i~el~~~~P~lL~~Vip~Le~eL~se~~--~~-----------R~~At~~lg~m~s~~~~~~~------------~~~~~ 303 (1012)
.++...++.|-.++++|+. .+ |.+.-+.+.+||--||-.+. ..|=.
T Consensus 1168 ---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ey~e~~~~vYL~ 1238 (1525)
T COG5219 1168 ---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKEEYRERHTIVYLP 1238 (1525)
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHHHHHHHhhHHHHH
Confidence 4455556666666666654 33 44456789999998874331 24678
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhH
Q 001793 304 VFSEFLKRLTDRIVAVRMSVLEHVK 328 (1012)
Q Consensus 304 ~~~~fL~R~~D~s~~VR~~~v~~~~ 328 (1012)
+|+--++-|.|.+-.+|...+++..
T Consensus 1239 ~w~lI~~hf~dT~yNm~~siI~qL~ 1263 (1525)
T COG5219 1239 LWRLIYGHFADTVYNMYSSIISQLD 1263 (1525)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 8999999999999999999988864
No 191
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.93 E-value=1.8e+02 Score=28.86 Aligned_cols=81 Identities=17% Similarity=0.211 Sum_probs=57.8
Q ss_pred HHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhh---c--CCCCHHHHHHHHHhhccCChh----HHHH
Q 001793 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA---L--NSIPVETVKLVAERLRDKSVL----VKRY 399 (1012)
Q Consensus 329 ~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~---~--~~v~~~~l~~l~eR~rDKk~~----VR~~ 399 (1012)
+.+..++ ....+.+++|.+||...+.+|-.-|+..+..+.... | ...+.+.+..+...+.+++.. ||+.
T Consensus 31 D~i~~~~--~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k 108 (140)
T PF00790_consen 31 DLINSSP--DGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEK 108 (140)
T ss_dssp HHHHTST--THHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHH
T ss_pred HHHHcCC--ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHH
Confidence 3344443 345799999999999999999999998888776543 2 234667788888888887754 7777
Q ss_pred HHHHHHHHHHHhh
Q 001793 400 TMERLADIFRGCC 412 (1012)
Q Consensus 400 Ai~~L~~lY~~~~ 412 (1012)
++..+.. |...+
T Consensus 109 ~l~ll~~-W~~~f 120 (140)
T PF00790_consen 109 ILELLQE-WAEAF 120 (140)
T ss_dssp HHHHHHH-HHHHT
T ss_pred HHHHHHH-HHHHH
Confidence 7766554 44444
No 192
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.92 E-value=1.3e+03 Score=26.73 Aligned_cols=200 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhhHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhh-Cchhhhh
Q 001793 186 QEDLLVILLSALGRN--KNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSG 262 (1012)
Q Consensus 186 ~~~~ld~il~~~~~~--~~~~a~~la~~v~~~~~~~l~~~i~~~f~~~l~~~~~~~~~~~~~h~li~el~~~-~P~lL~~ 262 (1012)
|.+++..+-..+..- ......+-+.+-|.++...|. +++.|++.........+.|..|+++. .-.+|..
T Consensus 12 P~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK--------~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~ 83 (335)
T PF08569_consen 12 PAELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMK--------EILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIR 83 (335)
T ss_dssp HHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHH--------HHHHS-SS----HHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHH--------HHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHH
Q ss_pred hhhhhhccccCCChHHHHHHHHHHHHhhcCCCCC-------hhhhc-HHHHHHHHhcccCCChhHHHHHH-------HHh
Q 001793 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-------NNEQF-HSVFSEFLKRLTDRIVAVRMSVL-------EHV 327 (1012)
Q Consensus 263 Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~-------~~~~~-~~~~~~fL~R~~D~s~~VR~~~v-------~~~ 327 (1012)
.+|.|+.| .|..++..++.++.....+ +...| |++....+.-..+.+..+=+.-+ +.+
T Consensus 84 ~L~~L~fE-------srKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l 156 (335)
T PF08569_consen 84 NLPKLDFE-------SRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESL 156 (335)
T ss_dssp TGGGS-HH-------HHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHH
T ss_pred HhhhCCCc-------ccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHH
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHcCCchhHHHHHHHHHHHHhhhhhcCCCCH-------HHHHHHHHhhccCChhHHHHH
Q 001793 328 KSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-------ETVKLVAERLRDKSVLVKRYT 400 (1012)
Q Consensus 328 ~~il~~~~~~~~~~~i~~~l~~rL~D~DekVR~aaV~~i~~la~~~~~~v~~-------~~l~~l~eR~rDKk~~VR~~A 400 (1012)
-.++..++ ....+-+-...+.=.|=..|...+.++-...-..++. ..+......+.-.+.-.|+.+
T Consensus 157 ~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 157 AKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp HHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred HHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Q ss_pred HHHHHHH
Q 001793 401 MERLADI 407 (1012)
Q Consensus 401 i~~L~~l 407 (1012)
++.||.+
T Consensus 230 lkLL~el 236 (335)
T PF08569_consen 230 LKLLGEL 236 (335)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 193
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=5.4e+02 Score=29.53 Aligned_cols=161 Identities=15% Similarity=0.198 Sum_probs=94.6
Q ss_pred HHHHHHhh--CchhhhhhhhhhhccccCCChHHHHHHHHHHHHhhcCCCCChhh-----hcHHHHHHHHhcccCCChhHH
Q 001793 248 VIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVR 320 (1012)
Q Consensus 248 li~el~~~--~P~lL~~Vip~Le~eL~se~~~~R~~At~~lg~m~s~~~~~~~~-----~~~~~~~~fL~R~~D~s~~VR 320 (1012)
.+-.|++. --.+.-+.+|-|.--|.+++..+..+|.+.+|.++-+-+.+-++ .+..++...+.-.-.-+-+|-
T Consensus 66 cLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVA 145 (524)
T KOG4413|consen 66 CLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVA 145 (524)
T ss_pred HHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHH
Confidence 44444443 23455567888999999999999999999999999876654432 356677766666666677888
Q ss_pred HHHHHHhHHHHhcCCCCC--ChhHHHHHHHHH--cCCchhHHHHHHHHHHHHhhhh---hcCCCCHH-HHHH-HHHhhcc
Q 001793 321 MSVLEHVKSCLLTDPSRA--DAPQILTALCDR--LLDFDENVRKQVVAVICDVACH---ALNSIPVE-TVKL-VAERLRD 391 (1012)
Q Consensus 321 ~~~v~~~~~il~~~~~~~--~~~~i~~~l~~r--L~D~DekVR~aaV~~i~~la~~---~~~~v~~~-~l~~-l~eR~rD 391 (1012)
-+.++..+.|-......+ -.+++.+-+..| -.-..+-+|..|..-|.++..- +...+..+ ++.. .+|...-
T Consensus 146 kAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt 225 (524)
T KOG4413|consen 146 KAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT 225 (524)
T ss_pred HHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC
Confidence 888888877654321000 001222222222 2334456777777766654332 22222222 2222 2333344
Q ss_pred CChhHHHHHHHHHHHHH
Q 001793 392 KSVLVKRYTMERLADIF 408 (1012)
Q Consensus 392 Kk~~VR~~Ai~~L~~lY 408 (1012)
|..-||..+++..-.+-
T Consensus 226 eDtLVianciElvteLa 242 (524)
T KOG4413|consen 226 EDTLVIANCIELVTELA 242 (524)
T ss_pred cceeehhhHHHHHHHHH
Confidence 66778877777655543
No 194
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.71 E-value=4.2e+02 Score=27.71 Aligned_cols=111 Identities=23% Similarity=0.324 Sum_probs=55.3
Q ss_pred cchHHHHHHHHHHHHhhcCCCCCCC--chHHHHHHHHHHHhccCC-CCCCCCchhhHHHHHHHHHhhhhhhhhccCCccH
Q 001793 70 KDVKLLVATCICEITRITAPEAPYS--DDVLKDIFQLIVGTFSGL-KDTGGPSFGRRVVILETLAKYRSCVVMLDLECDE 146 (1012)
Q Consensus 70 ~~Vr~~~acCl~dilRi~APdaPy~--~~~lkdIf~l~~~~~~~L-~d~~~~~~~~~~~lLe~la~vks~vl~~dl~~~~ 146 (1012)
..||.-++-|+..++.-..|+-|+- .++|++||..--.. .+ ......+|++-..||.. +.
T Consensus 21 DrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~--~~~w~~~~~~F~~l~~LL~~---------------~~ 83 (193)
T PF12612_consen 21 DRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA--SLNWSSSSEYFPRLVKLLDL---------------PE 83 (193)
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc--ccccCCHHHHHHHHHHHhcc---------------HH
Confidence 4599999999999994443433433 36777777533221 11 11122344444433321 13
Q ss_pred HHHHHHHHHHHhhcCCChhcHHHHHHHHHHHHhc---ccccccHHHHHHHHHhhc
Q 001793 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE---ESEDIQEDLLVILLSALG 198 (1012)
Q Consensus 147 li~~lF~~~~~~v~~~~~~~v~~~m~~Il~~vI~---E~~~v~~~~ld~il~~~~ 198 (1012)
.-..++..+.--+ ++..+.+......-|...+. +.......+++.|+..+.
T Consensus 84 y~~~ll~Glv~S~-G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 84 YRYSLLSGLVVSA-GGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred HHHHHHhHHHhcC-CCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 3334444444333 33444555555555555553 334445555555555444
Done!