Query 001793
Match_columns 1012
No_of_seqs 166 out of 291
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 16:43:05 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001793.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1089-1092//hhsearch_pdb/001793hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 93.7 44.2 321 31-408 31-387 (852)
2 1b3u_A Protein (protein phosph 1.0 1 1 86.6 35.6 290 64-409 18-310 (588)
3 1b3u_A Protein (protein phosph 1.0 1 1 80.4 32.3 27 343-369 165-191 (588)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 78.1 49.7 679 68-865 53-813 (861)
5 1qgr_A Protein (importin beta 1.0 1 1 74.8 49.4 226 626-867 582-831 (876)
6 4fdd_A Transportin-1; heat rep 1.0 1 1 74.2 51.5 96 742-865 649-744 (852)
7 2vgl_B AP-2 complex subunit be 1.0 1 1 71.5 35.6 492 264-891 15-522 (591)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 70.7 51.7 335 65-410 95-507 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 69.5 51.8 150 261-410 133-296 (861)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 69.1 33.3 124 245-374 69-192 (591)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=93.66 Aligned_cols=321 Identities=15% Similarity=0.136 Sum_probs=138.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999986328999431387379999973303221488810489999999888752199999990479899999998126
Q 001793 31 KQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFS 110 (1012)
Q Consensus 31 ~~l~~~L~~~~Q~~~~~~~~~l~~~~~~L~~~~lL~h~d~~Vr~~~acCl~dilRi~APdaPy~d~~lkdIf~l~i~~l~ 110 (1012)
+.....|..+.+.|. +-.+...++.. +.+.|.+||.+.|.-|-..++-+=+ +.++++...|-..++..
T Consensus 31 ~~Ae~~L~~~~~~p~------~~~~l~~il~~--~~~~~~~vR~~a~~~Lkn~i~~~w~--~~~~~~~~~ik~~ll~~-- 98 (852)
T 4fdd_A 31 RTVQQKLEQLNQYPD------FNNYLIFVLTK--LKSEDEPTRSLSGLILKNNVKAHFQ--NFPNGVTDFIKSECLNN-- 98 (852)
T ss_dssp HHHHHHHHHHTTSHH------HHHHHHHHHHT--CTTSCHHHHHHHHHHHHHHTTTSGG--GCCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHCCC------HHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHH--
T ss_conf 999999999870998------89999999856--6889867999999999998987447--79999999999999998--
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHCCCCCC---
Q ss_conf 888889986256999999997443644311698--407999999999972138980308999999999986023345---
Q 001793 111 GLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE--CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDI--- 185 (1012)
Q Consensus 111 ~L~d~~~~~~~~~~~lLe~la~vks~vl~~Dl~--~~~li~~lF~~~f~~v~~~~~~~v~~~m~~Il~~iI~E~~~i--- 185 (1012)
|.+++. .-+..+-+.++.+- -.|-+ -.+++..+++.+ +.+. ..+......++..+.++....
T Consensus 99 -l~~~~~---~vr~~~a~~i~~ia----~~~~~~~wp~ll~~L~~~l----~~~~-~~~r~~al~~L~~i~~~~~~~~~~ 165 (852)
T 4fdd_A 99 -IGDSSP---LIRATVGILITTIA----SKGELQNWPDLLPKLCSLL----DSED-YNTCEGAFGALQKICEDSAEILDS 165 (852)
T ss_dssp -TTCSSH---HHHHHHHHHHHHHH----HHTTTTTCTTHHHHHHHHH----SCSS-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred -HCCCCH---HHHHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHH----CCCC-HHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf -749989---99999999999999----8648135689999999987----0999-899999999999999985787563
Q ss_pred --CHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHH
Q ss_conf --38899999996147---9976799999999999545337999999997306999998773038899999983071245
Q 001793 186 --QEDLLVILLSALGR---NKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQIL 260 (1012)
Q Consensus 186 --p~~~ld~il~~~~~---~~~~~a~~la~~i~~~~~~~l~~~i~~~f~~~~~~~~~~~~~~~~~h~li~el~~~~P~lL 260 (1012)
....++.++..+.. ..+...+.-|... ++.++...+ . .+....+++
T Consensus 166 ~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~a---------------L~~~~~~~~-------~------~~~~~~~~~- 216 (852)
T 4fdd_A 166 DVLDRPLNIMIPKFLQFFKHSSPKIRSHAVAC---------------VNQFIISRT-------Q------ALMLHIDSF- 216 (852)
T ss_dssp CSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHH---------------HHTTTTTTC-------H------HHHTSHHHH-
T ss_pred HHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHH---------------HHHHHHCCC-------H------HHHHHHHHH-
T ss_conf 43133299999999998567978999999999---------------999986463-------8------799889999-
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC----C
Q ss_conf 402331200235777689999999999862589987021039999999820069991199999999588772299----9
Q 001793 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP----S 336 (1012)
Q Consensus 261 ~~Vip~L~~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~----~ 336 (1012)
+|.+-.-+..++..+|..|.+.++++....+..+....+.++..+++...|.+..||...+++...+..... .
T Consensus 217 ---l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~ 293 (852)
T 4fdd_A 217 ---IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVL 293 (852)
T ss_dssp ---HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred ---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf ---99999871799778999999999999985779899889999999998706996899999999999986036579887
Q ss_pred CCCHHHHHHHHHHHC-----------CC-----------CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 998668999997770-----------79-----------63689999999999864321588898889999976036892
Q 001793 337 RADAPQILTALCDRL-----------LD-----------FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1012)
Q Consensus 337 ~~~~~~i~~~L~~rL-----------~D-----------~DekVR~~aV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~ 394 (1012)
......+++.+...+ .| .+..||.++..++..++......+-..++..+.+.+.|.++
T Consensus 294 ~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~ 373 (852)
T 4fdd_A 294 VRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEW 373 (852)
T ss_dssp TTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 88898899999987578676799866984432224564011169999999999998746187899999999998559988
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 69999999999999
Q 001793 395 LVKRYTMERLADIF 408 (1012)
Q Consensus 395 ~VR~~Ai~~L~~lY 408 (1012)
.+|..|+..++.+-
T Consensus 374 ~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 374 VVKESGILVLGAIA 387 (852)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 2
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=86.61 Aligned_cols=290 Identities=13% Similarity=0.145 Sum_probs=110.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 21488810489999999888752199999990479899999998126888889986256999999997443644311698
Q 001793 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1012)
Q Consensus 64 lL~h~d~~Vr~~~acCl~dilRi~APdaPy~d~~lkdIf~l~i~~l~~L~d~~~~~~~~~~~lLe~la~vks~vl~~Dl~ 143 (1012)
.|+|.|.++|..++-++..+.+..-|+ ....++..++.... |+ ++ .-+..+.+.+...-. .+.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~~-----~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~-----~~~ 80 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGVE-----RTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTT-----LVG 80 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCHH-----HHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSG-----GGT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHC----CC-CH--HHHHHHHHHHHHHHH-----CCC
T ss_conf 850621999999997199999986979-----89998998898755----78-58--999999999977876-----058
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 40799999999997213898030899999999998602334--5388999999961479976799999999999545337
Q 001793 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED--IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLE 221 (1012)
Q Consensus 144 ~~~li~~lF~~~f~~v~~~~~~~v~~~m~~Il~~iI~E~~~--ip~~~ld~il~~~~~~~~~~a~~la~~i~~~~~~~l~ 221 (1012)
..+....++..+....+ +....|.....+.+..+.+.... +...++. ++..+........+..|..++......+.
T Consensus 81 ~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~-~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 81 GPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEHSPSDLEAHFVP-LVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp SGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHH-HHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 59899998999999874-76079999999999999997999999999999-99998507771799999999999998569
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHC
Q ss_conf 99999999730699999877303889999998307124540233120023577768999999999986258998702103
Q 001793 222 AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF 301 (1012)
Q Consensus 222 ~~i~~~f~~~~~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~L~~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~ 301 (1012)
. .....++|.+..-+..++..+|..|.+.+|.+...-+.+ ...
T Consensus 159 ~-----------------------------------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~ 201 (588)
T 1b3u_A 159 S-----------------------------------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVK 201 (588)
T ss_dssp H-----------------------------------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHH
T ss_pred H-----------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--HHH
T ss_conf 9-----------------------------------999999999999848997889999999899999981677--679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-CCCCCHH
Q ss_conf 999999982006999119999999958877229999986689999977707963689999999999864321-5888988
Q 001793 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVE 380 (1012)
Q Consensus 302 ~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~i~~~L~~rL~D~DekVR~~aV~~i~~la~~~-l~~v~~~ 380 (1012)
+.+...++.-.+|.++.||...+++.+.+....+.......+++.+...+.|.+++||.+++.+++.++... .......
T Consensus 202 ~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ 281 (588)
T 1b3u_A 202 SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTD 281 (588)
T ss_dssp HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999882499288999899999999985798888878999999980699778999999999999998195210558
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999976036892699999999999999
Q 001793 381 TVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1012)
Q Consensus 381 ~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~ 409 (1012)
++..+...+.|..+.||..|...++.+-.
T Consensus 282 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 282 LVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999998589958999999987999999
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=80.36 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 999997770796368999999999986
Q 001793 343 ILTALCDRLLDFDENVRKQVVAVICDV 369 (1012)
Q Consensus 343 i~~~L~~rL~D~DekVR~~aV~~i~~l 369 (1012)
+.+.+...+.|+|..||.+++.+++.+
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l 191 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEF 191 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999984899788999999989999
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=78.09 Aligned_cols=679 Identities=13% Similarity=0.125 Sum_probs=316.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC---------CC-CCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88104899999998887521999---------99-990479899999998126888889986256999999997443644
Q 001793 68 QDKDVKLLVATCICEITRITAPE---------AP-YSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV 137 (1012)
Q Consensus 68 ~d~~Vr~~~acCl~dilRi~APd---------aP-y~d~~lkdIf~l~i~~l~~L~d~~~~~~~~~~~lLe~la~vks~v 137 (1012)
.+.+||.+.+..|-..++-+-+. .. .++++...|-..++..+ .+++ +. -+..+-..++.+-
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l---~~~~-~~--vr~~~~~~l~~i~--- 123 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL---VSIE-PR--IANAAAQLIAAIA--- 123 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH---TCSS-HH--HHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---CCCC-HH--HHHHHHHHHHHHH---
T ss_conf 9867999999998702257574878999976766299999999999999987---7996-37--9999999999999---
Q ss_pred HHCCCCC---CHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHCCC-CCHHHH
Q ss_conf 3116984---0799999999997213898030899999999998602334-------5388999999961479-976799
Q 001793 138 VMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRN-KNDTAR 206 (1012)
Q Consensus 138 l~~Dl~~---~~li~~lF~~~f~~v~~~~~~~v~~~m~~Il~~iI~E~~~-------ip~~~ld~il~~~~~~-~~~~a~ 206 (1012)
..|.|. .+++..+ ++..+++....+......++..+.++... .-..++..++..+... .+..-+
T Consensus 124 -~~~~p~~~w~~ll~~L----~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 198 (861)
T 2bpt_A 124 -DIELPHGAWPELMKIM----VDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198 (861)
T ss_dssp -HHHGGGTCCHHHHHHH----HHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -HHHCCCCCCHHHHHHH----HHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf -8467645549999999----99872689789999999999999972784356789889999999998415799987899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999954533799999999730699999877303889999998307124540233120023577768999999999
Q 001793 207 RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 286 (1012)
Q Consensus 207 ~la~~i~~~~~~~l~~~i~~~f~~~~~~~~~~~~~~~~~h~li~el~~~~P~lL~~Vip~L~~eL~se~~~~R~~At~~l 286 (1012)
..|.+.+..+...+... +.. . .. | +. +++.|..-+.+++..+|..|.+.+
T Consensus 199 ~~al~~l~~~~~~~~~~--------~~~-------~-~~-------~----~~---ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 199 LAALNALADSLIFIKNN--------MER-------E-GE-------R----NY---LMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp HHHHHHHHHHGGGCHHH--------HTS-------H-HH-------H----HH---HHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------CCC-------H-HH-------H----HH---HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999999987--------067-------6-68-------9----99---999999986599889999999999
Q ss_pred HHHHCCCCCCHHHHCH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC-------------C--CCC----CHHHHHHH
Q ss_conf 9862589987021039-99999982006999119999999958877229-------------9--999----86689999
Q 001793 287 GDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------P--SRA----DAPQILTA 346 (1012)
Q Consensus 287 g~m~s~~~~~~~~~~~-~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~-------------~--~~~----~~~~i~~~ 346 (1012)
+++....+..+....+ .+|..++....|.+..||...+++...+.... | ... ....+++.
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999988999998899999999998737727899999999999998788643332103577325699999999889999
Q ss_pred HHHHCCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 977707963-------6899999999998643215888988899999760368926999999999999998622104898
Q 001793 347 LCDRLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1012)
Q Consensus 347 L~~rL~D~D-------ekVR~~aV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~ 419 (1012)
+...+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+..++.+-..... .
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~-----~ 403 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK-----V 403 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH-----H
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCH-----H
T ss_conf 99998706653012468689999999999998740868999999999875799726999999999999859987-----8
Q ss_pred CCHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCHHHHHHH-H--HHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 520000662588873541167772349999641587999997989999-9--9998119999999999999999999999
Q 001793 420 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH-W--VRIFSGFDRIEMKALEKILEQKQRLQQE 496 (1012)
Q Consensus 420 ~~~~~~~wIP~~iL~~~y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~-l--~~~~~~lD~~~~kal~~il~~k~~l~~~ 496 (1012)
.....+..|-..+++.. +| .++..|... | ..+...+.+. + .....+...
T Consensus 404 ~~~~~l~~il~~l~~~l--~d------------------~~~~vr~~a~~~l~~l~~~~~~~-------~-~~~~~~~~~ 455 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLM--ND------------------QSLQVKETTAWCIGRIADSVAES-------I-DPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHHHHHHHHGG--GC------------------SCHHHHHHHHHHHHHHHHHHGGG-------S-CTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CC------------------CCHHHHHHHHHHHHHHHHHHHHH-------C-CCHHHHHHH
T ss_conf 88998999999999882--89------------------95999999999999999873540-------4-878889999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHC-CC--CCHH-HHHH
Q ss_conf 999999985522899279999999999997642699--3468899999885103879999999853-69--9999-8999
Q 001793 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMNLLD-SN--TSFD-QAFT 570 (1012)
Q Consensus 497 ~~~~l~~~~~~~~~~~~~~~~kl~~~i~~la~~fpd--~~ka~~~l~kl~~l~D~r~~~ll~~~~~-~~--s~~~-~~~~ 570 (1012)
+..++... + +.+.+.......+..++..+++ +......+ ..+...+..+++ ++ .+.+ .+..
T Consensus 456 l~~l~~~l---~--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 456 VQACLIGL---Q--DHPKVATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp HHHHHHHH---T--SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred HHHHHHHH---C--CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999976---4--47289999999999999862313542468999--------99999999998575861589999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--------C---CCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999946898659999999984110355676899999999840--------2---6302453788999999988418
Q 001793 571 GRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQ--------K---SSANAQFMQSCMDILGILARFS 639 (1012)
Q Consensus 571 a~~ellkkl~~~~~~~~~~~~Ll~R~s~~i~n~s~V~~Ll~~~~~~--------~---~~~~~~~~~~a~~LL~~iS~~~ 639 (1012)
+...+.+..+.. ...++. .-++.+++.+... . .+........+.+.|..+....
T Consensus 523 al~~l~~~~~~~--~~~~~~-------------~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 523 ALTTMVEYATDT--VAETSA-------------SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp HHHHHHHHCCGG--GHHHHH-------------HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHH--HHHHHH-------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999976265--699999-------------99999999999887532013885567779999999999999999985
Q ss_pred CCCCCCCHHHHHH----HHHHCCC-CCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9674443899999----9730131-0147699999985041486421046129999999840699487899999998421
Q 001793 640 PLLLGGTEEELVN----LLKEENE-IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1012)
Q Consensus 640 P~lf~~~~~~L~~----~L~~~~~-~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~L~~~~ 714 (1012)
+.-+..+.+.+.. .+...+. .+.+.++..+........+.+.+.-..+.+.|.+......+.....|+.++..+.
T Consensus 588 ~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 588 PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 56347899999999999974678875799999999999999766099999999999998865566789999999999999
Q ss_pred CCCCC---CHHHHHHHHHHHHHHHC---C-CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 78732---24999999999863215---9-98438789999993323231451678999999846235665677877877
Q 001793 715 KDDGL---KSLSVLYKRLVDMLEEK---T-HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACW 787 (1012)
Q Consensus 715 ~~~~~---~~~~~l~~~l~~~l~~~---~-~~~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W 787 (1012)
..-+. .....++..+.+.+... . --.+.+.++|.+++..+..|......+...+++-+-.. .+. +++++
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~---~~~-~d~d~ 743 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK---PEN-GTLEA 743 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC---CSS-SSHHH
T ss_pred HHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCC-CCHHH
T ss_conf 87454031119999999999727865567665999999999999840508999999999999997367---899-97588
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 78704678899999999995159776--6532214779999998421476656778996677665699999999755203
Q 001793 788 DDRSELCLLKIYGIKTLVKSYLPVKD--AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1012)
Q Consensus 788 ~~~~~~~~~Ki~aLK~lvn~l~~~~~--~~~~~~~~~~~~lL~~i~~~Ge~~~~~~t~~~~~srLRL~Aa~~lLKLa~~~ 865 (1012)
. +.....+..+++++...+.+..+ +..++.+..++..|...+.+++ ..+...+|-+|...+=.|++.+
T Consensus 744 ~--~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~--------~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 744 L--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ--------LYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH--------HHTSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9--99999999999999999999826778899999999999999874855--------5786999999999999999882
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=74.84 Aligned_cols=226 Identities=11% Similarity=0.060 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHH----HHHHHCC--CCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 889999999884189-67444389999----9973013--1014769999998504148642104612999999984069
Q 001793 626 QSCMDILGILARFSP-LLLGGTEEELV----NLLKEEN--EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 698 (1012)
Q Consensus 626 ~~a~~LL~~iS~~~P-~lf~~~~~~L~----~~L~~~~--~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~la~~G 698 (1012)
..+...|..+....+ .-|..+...+. ..+...+ ..+.+.++..+..........+.+.-..+.+.|.......
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999982854205789999999999998536888850899999999999987609999999999999987586
Q ss_pred -CHHHHHHHHHHHHHHCCCCC--C-CHHHHHHHHHHHHHHHC--C--CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf -94878999999984217873--2-24999999999863215--9--984387899999933232314516789999998
Q 001793 699 -SRRQAKYAVHALAAITKDDG--L-KSLSVLYKRLVDMLEEK--T--HLPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 770 (1012)
Q Consensus 699 -tp~~AK~Av~~L~~~~~~~~--~-~~~~~l~~~l~~~l~~~--~--~~~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik 770 (1012)
.+..-+.|+.+++.+...-+ . .....++..+.+.+... + --...+.++|.|+...+..|......+...+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 50879999999999999988785464599999999997487123387639999999999997035279999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 4623566567787787778704678899999999995159776---------6532214779999998421476656778
Q 001793 771 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD---------AHIRPGIDDLLGILKSMLSYGEMSEDIE 841 (1012)
Q Consensus 771 ~iL~~~~~~~~~~~~~W~~~~~~~~~Ki~aLK~lvn~l~~~~~---------~~~~~~~~~~~~lL~~i~~~Ge~~~~~~ 841 (1012)
- +... . + .++++|.++ ....+..+++++...+.+... +...+.+..++..+.....+ +
T Consensus 742 ~-~~~~-~-~-~~d~~~~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------~ 808 (876)
T 1qgr_A 742 A-SQAQ-V-D-KSDYDMVDY--LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD-------E 808 (876)
T ss_dssp H-HTCC-C-C-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC-------S
T ss_pred H-HHCC-C-C-CCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-------C
T ss_conf 9-8555-8-9-997588999--99999999999999999974575555543889999999999999998658-------8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99667766569999999975520388
Q 001793 842 SSSVDKAHLRLASAKAVLRLSRQWDH 867 (1012)
Q Consensus 842 t~~~~~srLRL~Aa~~lLKLa~~~~~ 867 (1012)
. .-...|-.|..++=.|+..+..
T Consensus 809 ~---~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 809 D---HTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHCT
T ss_pred C---CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8---8889999999999999988284
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=74.17 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 87899999933232314516789999998462356656778778777870467889999999999515977665322147
Q 001793 742 VLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID 821 (1012)
Q Consensus 742 ~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~~~~~~~~~Ki~aLK~lvn~l~~~~~~~~~~~~~ 821 (1012)
....++.+++..+..|......+...+++.+ .. ++......=+|++.-++..+- +...+.+.
T Consensus 649 a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l--~~------------~~~~v~~~a~~alg~i~~~~~----~~~~p~~~ 710 (852)
T 4fdd_A 649 SFALLGDLTKACFQHVKPCIADFMPILGTNL--NP------------EFISVCNNATWAIGEISIQMG----IEMQPYIP 710 (852)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC--CT------------TSHHHHHHHHHHHHHHHHHHG----GGGGGGTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC------------CCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf 9999999999816888987999999999876--94------------206899999999999999711----76787899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79999998421476656778996677665699999999755203
Q 001793 822 DLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1012)
Q Consensus 822 ~~~~lL~~i~~~Ge~~~~~~t~~~~~srLRL~Aa~~lLKLa~~~ 865 (1012)
.++..|..+++. |. ....+|-.|+.++-+|++..
T Consensus 711 ~il~~L~~~l~~---------~~-~~~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 711 MVLHQLVEIINR---------PN-TPKTLLENTAITIGRLGYVC 744 (852)
T ss_dssp HHHHHHHHHHTC---------SS-CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC---------CC-CCCHHHHHHHHHHHHHHHHC
T ss_conf 999999998579---------98-87207788999999999868
No 7
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=71.51 Aligned_cols=492 Identities=12% Similarity=0.108 Sum_probs=220.7
Q ss_pred HHHHHCCCCCCCHHHHHHHH-HHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 33120023577768999999-99998625899870210399999998200699911999999995887722999998668
Q 001793 264 VPYLTGELLTDQLDTRLKAV-GLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1012)
Q Consensus 264 ip~L~~eL~se~~~~R~~At-~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~~~~~~~~~~~ 342 (1012)
+..+..+|.+.+...|..+. +++.-|.-+. +...-++ ..++-..+.+..+|...--++..+...+|+ ...-
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~--d~~~~~~----~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e--~~~l 86 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGK--DVSSLFP----DVVNCMQTDNLELKKLVYLYLMNYAKSQPD--MAIM 86 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTC--CCGGGHH----HHHHTTSSSCHHHHHHHHHHHHHHHHHSHH--HHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC--CHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHCCCCCH--HHHH
T ss_conf 9999998739987999999999999998799--8688999----999881799899999999999998665806--8999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 99999777079636899999999998643215888988899999760368926999999999999998622104898520
Q 001793 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQ 422 (1012)
Q Consensus 343 i~~~L~~rL~D~DekVR~~aV~~i~~la~~~l~~v~~~~l~~l~eR~rDKk~~VR~~Ai~~L~~lY~~~~~~~~~~~~~~ 422 (1012)
+++.+.+-|.|+++-||..|+.+++.+. ...+...++..+...+.|+++.||+.|...++++|+.+. ...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p-------~~~ 156 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA-------QMV 156 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC-------CCH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-------HHC
T ss_conf 9999997769999999999999987589---077899999999998179985899999999999985192-------414
Q ss_pred HHCCCCHHHHHHHHHCCCCCCHHHHHHH--HHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0006625888735411677723499996--41587999997989999999981199999999999999999999999999
Q 001793 423 NEFEWIPGKILRCLYDKDFGSDTIESVL--CGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRY 500 (1012)
Q Consensus 423 ~~~~wIP~~iL~~~y~~d~~~~~ve~vl--~e~LlP~~~~~~~R~~~l~~~~~~lD~~~~kal~~il~~k~~l~~~~~~~ 500 (1012)
..-+|+| .+..+..++|.. .....+ ...+.+..... + +-.+.. .++..++..-.
T Consensus 157 ~~~~~~~-~l~~lL~d~d~~--V~~~A~~aL~~i~~~~~~~--~-------~~~l~~---~~~~~Ll~~l~--------- 212 (591)
T 2vgl_B 157 EDQGFLD-SLRDLIADSNPM--VVANAVAALSEISESHPNS--N-------LLDLNP---QNINKLLTALN--------- 212 (591)
T ss_dssp HHHHHHH-HHHHTTSCSCHH--HHHHHHHHHHHHTTSCCSC--C-------SCCCHH---HHHHHHHHHHH---------
T ss_pred CCCCHHH-HHHHHHCCCCHH--HHHHHHHHHHHHHHHCCCC--C-------CHHCCH---HHHHHHHHCCC---------
T ss_conf 4635899-999996799843--9999999999997637875--4-------044269---99999987488---------
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99985522899279999999999997642699346889999988510387999999985369999989999999999946
Q 001793 501 LSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILG 580 (1012)
Q Consensus 501 l~~~~~~~~~~~~~~~~kl~~~i~~la~~fpd~~ka~~~l~kl~~l~D~r~~~ll~~~~~~~s~~~~~~~a~~ellkkl~ 580 (1012)
+ ..+-.+.++ ++.++...|..... .......+...++
T Consensus 213 --------~-~~~~~q~~i---l~~l~~l~~~~~~~-------------------------------~~~~l~~l~~~l~ 249 (591)
T 2vgl_B 213 --------E-CTEWGQIFI---LDCLSNYNPKDDRE-------------------------------AQSICERVTPRLS 249 (591)
T ss_dssp --------H-CCHHHHHHH---HHHHHTSCCCSHHH-------------------------------HHHHHHHHTTCSC
T ss_pred --------C-CCCHHHHHH---HHHHHHHCCCCHHH-------------------------------HHHHHHHHHHHHC
T ss_conf --------7-882578999---99999867998599-------------------------------9999999999875
Q ss_pred CCCC--HHHHHHHHHHHH-----HCCCCC---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
Q ss_conf 8986--599999999841-----103556---768999999998402630245378899999998841896744438999
Q 001793 581 AKHR--LYDFLSTLSMKC-----SYLLFN---KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEEL 650 (1012)
Q Consensus 581 ~~~~--~~~~~~~Ll~R~-----s~~i~n---~s~V~~Ll~~~~~~~~~~~~~~~~~a~~LL~~iS~~~P~lf~~~~~~L 650 (1012)
+.++ .++.++.+.+-. ++-.+. ..-++.|+. +. + .+.+ ..-.+.+-|..+...+|..+..+...+
T Consensus 250 ~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~-L~-~-~d~~--vr~~aL~~l~~i~~~~p~~~~~~~~~~ 324 (591)
T 2vgl_B 250 HANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVT-LL-S-GEPE--VQYVALRNINLIVQKRPEILKQEIKVF 324 (591)
T ss_dssp SSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHH-HT-T-SCHH--HHHHHHHHHHHHHHHCCSTTTTCTTTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH-HH-C-CCCC--HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 89849999999999997402478879999999999999999-96-6-9920--899999999999986969899988755
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99973013101476999999850414864210461299999998406994878999999984217873224999999999
Q 001793 651 VNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLV 730 (1012)
Q Consensus 651 ~~~L~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~L~~la~~Gtp~~AK~Av~~L~~~~~~~~~~~~~~l~~~l~ 730 (1012)
.... +++..+...++.++++.+.. ++. ..+...|..+....++.-.+-|++.|+.+...-. ......+..++
T Consensus 325 ~~~~-~d~~~Ir~~al~~L~~l~~~--~nv----~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~-~~~~~~v~~Ll 396 (591)
T 2vgl_B 325 FVKY-NDPIYVKLEKLDIMIRLASQ--ANI----AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE-QSAERCVSTLL 396 (591)
T ss_dssp SCCT-TSCHHHHHHHHHHHHHTCCS--STH----HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHH
T ss_pred EECC-CCHHHHHHHHHHHHHHHCCH--HHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHH
T ss_conf 0036-99399999999999987786--239----9999999999865799999999999999998574-67999999999
Q ss_pred HHHHHCCC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 86321599--8438789999993323231451678999999846235665677877877787046788999999999951
Q 001793 731 DMLEEKTH--LPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSY 808 (1012)
Q Consensus 731 ~~l~~~~~--~~~~L~sLa~ia~~~p~~f~~~~~~I~~fiik~iL~~~~~~~~~~~~~W~~~~~~~~~Ki~aLK~lvn~l 808 (1012)
+.+....+ ....+.++..|.+..|...+. ++..+.+- +. +.....++. -+-|+
T Consensus 397 ~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~----~v~~L~~~-l~---------------~~~~~~~~~-----~~~wi 451 (591)
T 2vgl_B 397 DLIQTKVNYVVQEAIVVIRDIFRKYPNKYES----IIATLCEN-LD---------------SLDEPDARA-----AMIWI 451 (591)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT----THHHHHHT-TT---------------TCCSHHHHH-----HHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH----HHHHHHHH-HH---------------HCCCHHHHH-----HHHHH
T ss_conf 9983551689999999999999979205789----99999988-87---------------423789999-----99999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC-CCHH
Q ss_conf 597766532214779999998421476656778996677665699999999755203887799999998321467-7244
Q 001793 809 LPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLTLRTPEI-SFPQ 887 (1012)
Q Consensus 809 ~~~~~~~~~~~~~~~~~lL~~i~~~Ge~~~~~~t~~~~~srLRL~Aa~~lLKLa~~~~~~i~~~~~~l~~l~~qD-~~~~ 887 (1012)
+|.-.+.... .. .+|..+.+ .+.. +-+..|+++-.++.|+.........+....++.....| ..++
T Consensus 452 lGey~~~~~~-~~---~~l~~l~~--~~~~-------~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~e 518 (591)
T 2vgl_B 452 VGEYAERIDN-AD---ELLESFLE--GFHD-------ESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPD 518 (591)
T ss_dssp HHTTCTTCTT-HH---HHHHHHST--TCSS-------SCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHH
T ss_pred HHCCCCCCCC-HH---HHHHHHHH--HHCC-------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9703121367-89---99999998--6645-------9888999999999999961965799999999998653589967
Q ss_pred HHHH
Q ss_conf 8999
Q 001793 888 AKKL 891 (1012)
Q Consensus 888 VR~~ 891 (1012)
||.+
T Consensus 519 vrdR 522 (591)
T 2vgl_B 519 LRDR 522 (591)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=70.65 Aligned_cols=335 Identities=14% Similarity=0.133 Sum_probs=161.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 14888104899999998887521999---999904798999999981268888899862569999999974436443116
Q 001793 65 LKHQDKDVKLLVATCICEITRITAPE---APYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1012)
Q Consensus 65 L~h~d~~Vr~~~acCl~dilRi~APd---aPy~d~~lkdIf~l~i~~l~~L~d~~~~~~~~~~~lLe~la~vks~vl~~D 141 (1012)
|.+.+..||.-++-||+.|.....|+ ..+......+++..++..+.. ++......+-++.+.++-... --.
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~~~~~-~~~ 168 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADMLSRQ-GGL 168 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHHHHHT-CSS
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 66983889999999999999967974444411788999999999998757-----884679999999999999982-767
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHH
Q ss_conf 984079999999999721389803089999999999860233-453889999999614799----767999999999995
Q 001793 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGRNK----NDTARRLAMNVIEQC 216 (1012)
Q Consensus 142 l~~~~li~~lF~~~f~~v~~~~~~~v~~~m~~Il~~iI~E~~-~ip~~~ld~il~~~~~~~----~~~a~~la~~i~~~~ 216 (1012)
+ ...+.++...++....+.+ ..|.......+..++...+ ..-..++..++..+.... ...+...-..++...
T Consensus 169 l--~~~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 169 L--VNFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp C--TTTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred H--HHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7--8879999999999875996-899999999999999856899999999999998616775568999999999999986
Q ss_pred HHHHHHHHHHHHH---HHHCCCCCCCCCCCHHHHHHHHHHHHCCH----HHHHHHHHHHCCCCCC---------------
Q ss_conf 4533799999999---73069999987730388999999830712----4540233120023577---------------
Q 001793 217 AGKLEAGIKQFLV---SSMSGDSRPGHSHIDYHEVIYDVYRCSPQ----ILSGVVPYLTGELLTD--------------- 274 (1012)
Q Consensus 217 ~~~l~~~i~~~f~---~~~~~~~~~~~~~~~~h~li~el~~~~P~----lL~~Vip~L~~eL~se--------------- 274 (1012)
.+.+.+++...+. ..+..++ ......+...+-.+-+.+|+ .+..++|.+-.-+..+
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~--~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDD--DELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCC--TTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 89899889999999999866897--7899999999999999784877776899999999982789988876441101122
Q ss_pred ----------------------CHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----------------------7689999999999862589987021039999999820069991199999999588772
Q 001793 275 ----------------------QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 332 (1012)
Q Consensus 275 ----------------------~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v~~~~~il~ 332 (1012)
...+|..|...++.+....+..+..-++.+...++.++.|.+..||...++..+.++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33446530110013666455567799999999999999746667999999998999987179865799999999999999
Q ss_pred CCCC---------------------CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHH
Q ss_conf 2999---------------------998668999997770796368999999999986432158889---8889999976
Q 001793 333 TDPS---------------------RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAER 388 (1012)
Q Consensus 333 ~~~~---------------------~~~~~~i~~~L~~rL~D~DekVR~~aV~~i~~la~~~l~~v~---~~~l~~l~eR 388 (1012)
.... ....+.+++.+...+.|.+++||.+++.+++++.......+. .+++..+.+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 72424343467520135645599999874699999999861377879999999999999976110577799999999999
Q ss_pred HCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 036892--6999999999999998
Q 001793 389 LRDKSV--LVKRYTMERLADIFRG 410 (1012)
Q Consensus 389 ~rDKk~--~VR~~Ai~~L~~lY~~ 410 (1012)
+.|++. .||.+|+..++.+...
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 748788516899999999999983
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=69.54 Aligned_cols=150 Identities=11% Similarity=0.180 Sum_probs=80.8
Q ss_pred HHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCCCC---HHHHCHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHHHC-
Q ss_conf 40233120023577-7689999999999862589987---0210399999998200699--911999999995887722-
Q 001793 261 SGVVPYLTGELLTD-QLDTRLKAVGLVGDLFAVPGSA---NNEQFHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLT- 333 (1012)
Q Consensus 261 ~~Vip~L~~eL~se-~~~~R~~At~~lg~m~s~~~~~---~~~~~~~~~~~fL~R~~D~--s~~VR~~~v~~~~~il~~- 333 (1012)
..++|.|..-+.++ +..+|..|..+++.+...-+.. +....+.+...++....|. ++.||...+++...++..
T Consensus 133 ~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~ 212 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI 212 (861)
T ss_dssp HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987268978999999999999997278435678988999999999841579998789999999999999999
Q ss_pred --CCCCC-CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf --99999-86689999977707963689999999999864321588898----889999976036892699999999999
Q 001793 334 --DPSRA-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV----ETVKLVAERLRDKSVLVKRYTMERLAD 406 (1012)
Q Consensus 334 --~~~~~-~~~~i~~~L~~rL~D~DekVR~~aV~~i~~la~~~l~~v~~----~~l~~l~eR~rDKk~~VR~~Ai~~L~~ 406 (1012)
+.... ....+++.+...+.|.|++||..+++.+..++......+.. .++..+...+.|....||..|+..++.
T Consensus 213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 98706766899999999998659988999999999999999988999998899999999998737727899999999999
Q ss_pred HHHH
Q ss_conf 9998
Q 001793 407 IFRG 410 (1012)
Q Consensus 407 lY~~ 410 (1012)
+...
T Consensus 293 l~~~ 296 (861)
T 2bpt_A 293 ICEE 296 (861)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9987
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=69.15 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 88999999830712454023312002357776899999999998625899870210399999998200699911999999
Q 001793 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1012)
Q Consensus 245 ~h~li~el~~~~P~lL~~Vip~L~~eL~se~~~~R~~At~~lg~m~s~~~~~~~~~~~~~~~~fL~R~~D~s~~VR~~~v 324 (1012)
.|--+..+.+..|+++.-+++.+...|.++|..+|..|.+++|.+-. .++. +.+......-..|.++.||...+
T Consensus 69 ~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~---~~~~---~~l~~~l~~~L~d~~~~VRk~A~ 142 (591)
T 2vgl_B 69 VYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRV---DKIT---EYLCEPLRKCLKDEDPYVRKTAA 142 (591)
T ss_dssp HHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS---GGGH---HHHHHHHHHHSSCSCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH---HHHH---HHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99999998665806899999999977699999999999999875890---7789---99999999981799858999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99588772299999866899999777079636899999999998643215
Q 001793 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHAL 374 (1012)
Q Consensus 325 ~~~~~il~~~~~~~~~~~i~~~L~~rL~D~DekVR~~aV~~i~~la~~~l 374 (1012)
.+...+...+|+.-...++++.+...|.|+|..||.+|+.+++++.....
T Consensus 143 ~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 143 VCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99999985192414463589999999679984399999999999976378
Done!