Query 001795
Match_columns 1012
No_of_seqs 231 out of 446
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 15:48:09 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001795.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1093-1097//hhsearch_pdb/001795hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msw_D DNA-directed RNA polyme 1.0 1 1 1780.3 56.5 800 166-1012 19-883 (883)
2 3spa_A Mtrpol, DNA-directed RN 1.0 1 1 1695.1 58.2 794 171-1012 296-1134(1134)
3 3q23_A Virion RNA polymerase; 1.0 1 1 71.7 13.6 483 486-986 337-1004(1118)
4 4dfk_A DNA polymerase I, therm 1.0 1 1 26.5 5.2 210 691-968 301-518 (540)
5 2kfn_A Klenow fragment of DNA 1.0 1 1 24.3 5.5 210 691-968 365-584 (605)
6 1bgx_T TAQ DNA polymerase; DNA 1.0 1 1 21.5 5.7 197 708-968 605-810 (832)
7 3pv8_A DNA polymerase I; DNA p 1.0 1 1 21.1 2.3 198 708-968 364-571 (592)
8 1x9m_A DNA polymerase; DNA plo 1.0 1 1 16.0 5.5 187 701-968 460-674 (698)
9 1d2v_A Myeloperoxidase; heme-p 1.0 1 1 15.2 0.0 11 711-721 9-19 (104)
10 2jro_A Uncharacterized protein 1.0 1 1 14.1 0.3 13 612-624 29-41 (78)
No 1
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=1.00 E-value=1 Score=1780.29 Aligned_cols=800 Identities=28% Similarity=0.459 Sum_probs=701.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC
Q ss_conf 98665288789-999999999999999999999999999997004999716999999989989999999999976-1057
Q 001795 166 EYREMKKRKFN-LLRRRQVKQETEAWERMVDEYKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR-TKKQ 243 (1012)
Q Consensus 166 ~~~~~~~~~~~-~l~eRQ~~lE~~~~~~a~~r~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~-~~~~ 243 (1012)
+-++.-...|+ .|++||++||++++++|++||++.+++++++|+++++|++++++.+|+++|+++|+++++..+ +.|.
T Consensus 19 ~~~~~~~~~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~ 98 (883)
T 1msw_D 19 IPFNTLADHYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGK 98 (883)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88999999866799999999999999999999999999999658856772659999999999999999999988503676
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42301332059936799999999998773279888524999999999999999999999998312321121123478888
Q 001795 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323 (1012)
Q Consensus 244 r~~y~p~L~~L~pe~lA~Iti~~ll~~~~~~~~~~~v~~~~~~~~IG~aVe~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1012)
++.|+|||++++||++|+|||+++|+++++ .+++++++++.+||++||+|++++++.++.++++.+.
T Consensus 99 ~~~~~~~L~~l~~e~lA~iti~~~l~~~~~---~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~~---------- 165 (883)
T 1msw_D 99 RPTAFQFLQEIKPEAVAYITIKTTLACLTS---ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKKN---------- 165 (883)
T ss_dssp CCTTTTTTTSSCHHHHHHHHHHHHHHHHHH---CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHH----------
T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_conf 057899997189999999999999987454---6886699999999999999999999999756789999----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-C-----CCCCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999887787777799999863-1-----78999999889999999999999987-15027899999999975673
Q 001795 324 KEKELLRKRVNSLIKSKRVMEAQKLL-K-----NEETKPWGRDTQAKLGSRLVELLIET-AYVQHPVNPADYSPPDVRPA 396 (1012)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~W~~~~~~kvG~~Li~~L~e~-~~i~~~~~~~~~~~~~~~pa 396 (1012)
..+.++++.+...++...+.+.... + ++++.+|+..++++||++|+++|+++ ++|+++...
T Consensus 166 -~~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~~----------- 233 (883)
T 1msw_D 166 -VEEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQN----------- 233 (883)
T ss_dssp -TSHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC------------
T ss_pred -HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCC-----------
T ss_conf -99998750037999999999999865315556677789998999999999999999865876310045-----------
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHH---HCCCCCCCCEEECCCCCCCCCCCEECCC---CCCCEECCC
Q ss_conf 2676554322799876506899963988999997410---0025899960208988757998210015---764043279
Q 001795 397 FRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSA---KHMLIPYVPMLVPPKKWKGYNKGGYLFL---PSYVMRTHG 470 (1012)
Q Consensus 397 F~h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpPkpW~~~~~GGYl~~---~~~i~R~~~ 470 (1012)
.|.. ++++|+|++||.+++.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|+..
T Consensus 234 -----------~~~~-~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~ 301 (883)
T 1msw_D 234 -----------AGVV-GQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS 301 (883)
T ss_dssp -------------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS
T ss_pred -----------CCCC-CCEEEEEEECHHHHHHHHHCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHCCCC
T ss_conf -----------6777-7513699848999999864111123307777852517844787999875377766312200267
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHH
Q ss_conf 4778999983004574789999975168306874879999999997-199878877888888999999989--8899999
Q 001795 471 SRKQQEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWV-SGGNIAGLVDRNDVLIPEKPLSED--MTEVQKW 547 (1012)
Q Consensus 471 s~~q~~~l~~~~~~~l~~v~~aLN~Lqst~WrIN~~VL~vi~~~w~-~g~~i~~l~~~~~~p~P~~p~~~d--~~~~~~w 547 (1012)
. .++++...++++.||++||+||+|||+||++||+|++++|+ +|+++++||++.+.|+|++|++.+ ++++++|
T Consensus 302 ~----~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~ 377 (883)
T 1msw_D 302 K----KALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAW 377 (883)
T ss_dssp T----THHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCT
T ss_pred H----HHHHHCCCCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 8----888741222268999999986148847559999999999965399506889867677999987554488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCH
Q ss_conf 99999999999995553432457999999605998222024678888535799999988721001532024586678112
Q 001795 548 KWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRPLGKSG 627 (1012)
Q Consensus 548 k~~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Ypi~~~Ln~qGsDl~RsLL~FaegkpLG~~G 627 (1012)
++.++.+++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++|
T Consensus 378 k~~~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~G 456 (883)
T 1msw_D 378 KRAAAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEG 456 (883)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCHHH
T ss_conf 99999999999999999999999999999835898487115667788688887-87988646888999864688668028
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 67999999663179977899888999999779999972059988834665089837899999999998723999852004
Q 001795 628 LRWLKIHLANLFSGGVEKLSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSPHSVISH 707 (1012)
Q Consensus 628 l~WLkIhlANl~G~G~DK~S~deRi~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfLA~C~El~~a~~~~~P~~y~S~ 707 (1012)
++|||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+|+||++|+++|+ +|+||
T Consensus 457 l~WLkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~ 531 (883)
T 1msw_D 457 YYWLKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCS 531 (883)
T ss_dssp HHHHHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEEC
T ss_pred HHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHCCCCHHHHHHHHHHHHHHHHCCC--CCCCC
T ss_conf 999999998862--887689899999999979999998509654-3577717868999999999999984788--65225
Q ss_pred CCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC------C------------
Q ss_conf 5645578861346899830896232013768788765225499999999997410899999------8------------
Q 001795 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSK------H------------ 769 (1012)
Q Consensus 708 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~~~~~------~------------ 769 (1012)
+||||||||||||||||||||..||++|||+|+|+|||||+.||+.|.+.+++|+..|... +
T Consensus 532 lPVhqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~ 611 (883)
T 1msw_D 532 LPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKL 611 (883)
T ss_dssp CCEEEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCC
T ss_conf 64456787738999999714764456727799998765689999999999999985165321124444211121011022
Q ss_pred -HHHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -168999995202652222340032101652230799999998774899984----658899889999999999999998
Q 001795 770 -PQALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDD----RQLFAAACYAAKVTLTALGEIFEA 844 (1012)
Q Consensus 770 -~~~~~ak~l~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~----~~~~~~a~Ylak~v~~ai~e~f~~ 844 (1012)
.....+++|.++|+||+|||||||+|||||++|+++||.++|+++++..++ .....+++|+|+++|++|+++|++
T Consensus 612 ~~~~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~ 691 (883)
T 1msw_D 612 GTKALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVA 691 (883)
T ss_dssp CHHHHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11679999984688887732440652007850506999999986530134532232244689999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHCC------------CCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEE---EECCC---CCCCH
Q ss_conf 999999999999999818------------9958997489991887412586635886359999---95279---85655
Q 001795 845 ARSIMGWLGDCAKVIASE------------NQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLA---LQREG---NLVEI 906 (1012)
Q Consensus 845 A~~im~WL~~~A~~i~~~------------~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~i~---l~~~~---d~vd~ 906 (1012)
|+.||+||++||++|+++ +.||.|+||+||||+|||++.++++|+|.+|... +..+. +++|+
T Consensus 692 a~~im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~t~l~~~~~i~l~~~~~~~~~~d~ 771 (883)
T 1msw_D 692 AVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDA 771 (883)
T ss_dssp HHHHHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCEEEEEEECCCCCCCCCCH
T ss_conf 99999999999999986301122100146898289989999888777057874688776413035753115554454566
Q ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHC-CC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 653106999520223158999999999653-99-498840443579899468999999999976092-248889999997
Q 001795 907 RKQRTAFPPNFVHSLDGSHMMMTAVACRDA-GL-HFAGVHDSFWTHACDVDEMNQILRKKFVELYNM-PMLENLLESFQT 983 (1012)
Q Consensus 907 rKq~~Af~PNFIHSLDAsHmmlta~~~~~~-Gi-~FasVHDSFwThA~dvd~m~~ilRe~FV~Lys~-~il~~l~e~f~~ 983 (1012)
+||++||||||||||||||||||+++|.+. |+ +|++|||||||||||||.|+++|||+||+||++ |+|++|.++|..
T Consensus 772 ~Kq~~af~PNFIHSLDAsHmmlta~~~~~~~gl~~fa~VHDsfwTha~dvd~m~~~lRe~FV~lys~~~~L~~l~~~~~~ 851 (883)
T 1msw_D 772 HKQESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFAD 851 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 77751778636756889999999999998559976578711666777549999999999999986389799999999998
Q ss_pred HCCC---CCCCCCCCCCCCCHHHHCCCCCCCC
Q ss_conf 4899---9899999788889010004788889
Q 001795 984 SYPT---LSFPPLPERGNFDLEEVLESPYFFN 1012 (1012)
Q Consensus 984 ~~~~---~~~p~~P~~G~LDL~~Vl~S~YFF~ 1012 (1012)
+|+. .+||++|++|+|||++|++|+|||+
T Consensus 852 ~~~~~~~~~~p~~P~~G~ldl~~Vl~S~YfFs 883 (883)
T 1msw_D 852 QLHESQLDKMPALPAKGNLNLRDILESDFAFA 883 (883)
T ss_dssp TTTCTTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred HCCHHHHHCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 65603332278998889979999966877779
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=1695.07 Aligned_cols=794 Identities=34% Similarity=0.607 Sum_probs=679.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCC
Q ss_conf 2887899999999999999999--9999---9999999997004999716999999989989999999999976--1057
Q 001795 171 KKRKFNLLRRRQVKQETEAWER--MVDE---YKELEAKMIEKRLAPNLPHIKGLFLGWFGPLSEAIEREQKMQR--TKKQ 243 (1012)
Q Consensus 171 ~~~~~~~l~eRQ~~lE~~~~~~--a~~r---~~~~~~~~~~~g~a~~~~~~~~ll~~w~~~L~~~I~~e~~~~~--~~~~ 243 (1012)
+....+.+.+.|+.+|..+.-. .+++ ..+++..+.+ .+..+..+|...|..+|+++..... ....
T Consensus 296 ~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~--------~l~~~~~~w~~~l~~~~~~~~~~~~~~~~~~ 367 (1134)
T 3spa_A 296 PLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARK--------TLKTLRDQWEKALCRALRETKNRLEREVYEG 367 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999987470577623457888789999999--------9999999999999999999999999762258
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 42301332059936799999999998773279888524999999999999999999999998312321121123478888
Q 001795 244 KAAYAPHIELLPADKVAVIVMHKMMGLVMAGHEDRCVQVVQAAVHIGMAIEQEIRIHSFLEKTKNYKRKKIIADTEEVLS 323 (1012)
Q Consensus 244 r~~y~p~L~~L~pe~lA~Iti~~ll~~~~~~~~~~~v~~~~~~~~IG~aVe~E~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (1012)
+..++|||+.|+.+.++.|.|.++..+..+ |..++.++..||..|++++.+++-...+. +.
T Consensus 368 ~~~~~p~l~~l~~~~~~~~~~~~~~~l~~~-----g~~~~~~~~~lg~~~~~~~~~~~~~~~~~--------------~~ 428 (1134)
T 3spa_A 368 RFSLYPFLCLLDEREVVRMLLQVLQALPAQ-----GESFTTLARELSARTFSRHVVQRQRVSGQ--------------VQ 428 (1134)
T ss_dssp CCCSTGGGGSSCHHHHHHHHHHHHHHCCTT-----CEEHHHHHHHHHHHHHHHHHHHHHHHHTH--------------HH
T ss_pred CCCCCCCEEECCHHHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
T ss_conf 976011013478899999999999986616-----74099999999999999999999986148--------------99
Q ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 9999999988778----------777779999986317--8999999889999999999999987150278999999999
Q 001795 324 KEKELLRKRVNSL----------IKSKRVMEAQKLLKN--EETKPWGRDTQAKLGSRLVELLIETAYVQHPVNPADYSPP 391 (1012)
Q Consensus 324 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~--~~~~~W~~~~~~kvG~~Li~~L~e~~~i~~~~~~~~~~~~ 391 (1012)
+..+.+.+...-+ ..+ ..|+.+... ..+.+|+..++++||++|+++|+++++|.+...++ ++..
T Consensus 429 ~~~~~y~~y~~~~~~~~~~~~~~~~r---~~w~~l~~~~~~~~~~W~~~~~~kvG~~Ll~~L~~~~~i~~~~~~~-~~~~ 504 (1134)
T 3spa_A 429 ALQNHYRKYLCLLASDAEVPEPCLPR---QYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDKP-HRSS 504 (1134)
T ss_dssp HHHHHHHHHGGGTCSSCCCSSCCCHH---HHHHHHHCCCCGGGCCCCHHHHHHHHHHHHHHHHHHCBCCC----------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHH---HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCC
T ss_conf 99999999999981488557778859---9999738865688999898999999999999998654487525588-9876
Q ss_pred CCCCCEEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHC---CCCCCCCEEECCCCCCCCCCCEECCCCCCCEEC
Q ss_conf 75673267655432279987650689996398899999741000---258999602089887579982100157640432
Q 001795 392 DVRPAFRHRFKTILKHPGQKTTKRYGVVECDPLVLEGLDRSAKH---MLIPYVPMLVPPKKWKGYNKGGYLFLPSYVMRT 468 (1012)
Q Consensus 392 ~~~paF~h~~~~~~~~~g~~~~k~~gvi~~~~~~~~~l~~~~~~---~~~~~lPMlvpPkpW~~~~~GGYl~~~~~i~R~ 468 (1012)
..+|||+|+|++. + ++++|+|++||.+.+.+++.... +.+.++||||||+||+++++||||+.++.+||+
T Consensus 505 ~~~paf~h~y~~~---~----~~~~G~i~~hp~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~t~~mR~ 577 (1134)
T 3spa_A 505 RLVPVLYHVYSFR---N----VQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRT 577 (1134)
T ss_dssp --CBSEEEEEC-----------CCCEEEEECHHHHHHHHHHTCSEEEEEGGGSCBSSCCEEEEETTEEESSSSCCCSBCC
T ss_pred CCCCCEEEEEEEE---C----CCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEC
T ss_conf 6543127899997---3----71889999899999999733542222576778740499888887885157307653656
Q ss_pred CCCHHH-HHHHHHCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHC-CCCCCCCCCCC-CCCCCCC---CCCCCHH
Q ss_conf 794778-9999830045747899999751683068748799999999971-99878877888-8889999---9998988
Q 001795 469 HGSRKQ-QEALKSVTGNCMKKVFEALDTLGSTKWRVNKQVLSVLESIWVS-GGNIAGLVDRN-DVLIPEK---PLSEDMT 542 (1012)
Q Consensus 469 ~~s~~q-~~~l~~~~~~~l~~v~~aLN~Lqst~WrIN~~VL~vi~~~w~~-g~~i~~l~~~~-~~p~P~~---p~~~d~~ 542 (1012)
++...| ...+++..+++|+.||++||+||+|||+||++||+|+.++|++ |+++.++|+.. +.|.|+. |.+.+++
T Consensus 578 ~~~~~q~~~~l~~~~~~~l~~v~~aLN~Lg~t~W~IN~~VLdVv~~vw~~~G~~~~~iP~~~~~~p~~p~~~~~~~~~~~ 657 (1134)
T 3spa_A 578 VEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPA 657 (1134)
T ss_dssp CTTHHHHHHHHHSSCGGGGHHHHHHHHHHHTCEEEECHHHHHHHHHHHTTTCBGGGTBCCCC------------------
T ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 88768899999735601238999999987089968639999999999984699747879985446899877899888989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
Q ss_conf 99999999999999999955534324579999996059982220246788885357999999887210015320245866
Q 001795 543 EVQKWKWSVRKAKKINQERHSQRCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEGRP 622 (1012)
Q Consensus 543 ~~~~wk~~~~~~~~~~~~~~S~R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Ypi~~~Ln~qGsDl~RsLL~Faegkp 622 (1012)
+.++|+++.+..++.++++||+||+++|+|++|++|+|+ .||||||+|||||+||+||||||||+|++||||+||+|+|
T Consensus 658 ~~~~~kr~~~~~~~~~~~~~S~Rc~~~~kL~iA~~f~~~-~fYfPhnlDFRGR~Yp~~p~LnhqGsDl~RsLL~Faegkp 736 (1134)
T 3spa_A 658 RKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDR-VFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRP 736 (1134)
T ss_dssp ----------------CTHHHHHHHHHHHHHHHHHHTTS-CEECCEEECTTCCEEESCSSSCSCSSHHHHHTEEESSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf 999999999999999999861558999999999980677-1651334577885767898768565437878888445771
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 78112679999996631799778-99888999999779999972059988834665089837899999999998723999
Q 001795 623 LGKSGLRWLKIHLANLFSGGVEK-LSHDGRLAFVENHLYEIFDSAENPINGSRWWLTAEDPFQCLAACINLSEALKSSSP 701 (1012)
Q Consensus 623 LG~~Gl~WLkIhlANl~G~G~DK-~S~deRi~wv~~n~~~I~dsA~dPl~g~~wW~~Ad~PwQfLA~C~El~~a~~~~~P 701 (1012)
||++|++|||||+||+| |+|| .||+||++|+++|+++|++||+||++|.+||++||+||||||+|+||++|++++||
T Consensus 737 LG~~Gl~WLkIhlAN~~--G~dKk~s~~eRi~wv~~n~~~I~dsA~~Pl~g~~wW~~Ad~PwQfLA~C~El~~a~~~~dp 814 (1134)
T 3spa_A 737 LGPHGLDWLKIHLVNLT--GLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDP 814 (1134)
T ss_dssp CTTTHHHHHHHHHHHHH--SCCTTSCHHHHHHHHHHHHHHHHHHHHCTTTSCCGGGGSSSHHHHHHHHHHHHHHHTSSSG
T ss_pred CCCCHHHHHHHHHHHHC--CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 78550999999999861--9876789999999999999999998739663636787378889999999999999856897
Q ss_pred CCCEECCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
Q ss_conf 85200456455788613468998308962320137687887652254999999999974108999998168999995202
Q 001795 702 HSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQ 781 (1012)
Q Consensus 702 ~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~~~~~~~~~~~ak~l~~~ 781 (1012)
++|+||+||||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|++++ ..+|+++.++
T Consensus 815 ~~y~S~lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~------~~~a~~l~~~ 888 (1134)
T 3spa_A 815 AAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG------MRVAQVLEGF 888 (1134)
T ss_dssp GGCEECCEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTT------CHHHHHTTTC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC------HHHHHHHHCC
T ss_conf 4310057556688774899999970686557773878888765078999999999998524337------0889996579
Q ss_pred CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 65222234003210165223079999999877489998465889988999999999999999899999999999999981
Q 001795 782 VDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIAS 861 (1012)
Q Consensus 782 I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~~A~~i~~ 861 (1012)
|+||+|||||||+|||||++|+++||.++|++.+.++++ ..+.+++|+++++|+||+++|++|+.||+||++||++|++
T Consensus 889 I~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~e~~~~~~~-~~~~~a~Yla~~i~~si~e~f~~a~~im~WL~~~A~~i~~ 967 (1134)
T 3spa_A 889 ITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISH 967 (1134)
T ss_dssp CCHHHHHHHHHHHHHCCSSSHHHHHHHHHHHTCTTSCTT-THHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHCCCCEEEEEECCEEHHHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 883322552277654661020799999999854567667-7889999999999999999999899999999999999956
Q ss_pred CCCCEEEECCCCCEEEEEECCCCCE-EEEEEEEEEEEECCCC---CCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8995899748999188741258663-5886359999952798---56556531069995202231589999999996539
Q 001795 862 ENQPVRWTTPLGLPVVQPYCKNERH-LIRTSLQVLALQREGN---LVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAG 937 (1012)
Q Consensus 862 ~~~pV~WtTP~GlpVvQ~Y~k~~~~-~I~t~lq~i~l~~~~d---~vd~rKq~~Af~PNFIHSLDAsHmmlta~~~~~~G 937 (1012)
++.||+|+||+||||+|||++..+. .|.+.+|.+++..+.+ ++|++||++|||||||||||||||||||++|.+.|
T Consensus 968 ~~~pV~WtTPlGlpVvQpY~k~~k~~~i~~~~q~v~~~~~~d~~~~~d~~KQ~~afpPNFIHSLDAsHmmlTa~~c~~~g 1047 (1134)
T 3spa_A 968 MGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKG 1047 (1134)
T ss_dssp TTCCCEEECTTSCEEECCCBCC-----------------------CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCEEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 79977998999988977626777446741783699985468766677878775067965876488999999999998679
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC------------CCCCCCCCCCCHHHHC
Q ss_conf 9498840443579899468999999999976092248889999997489998------------9999978888901000
Q 001795 938 LHFAGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYPTLS------------FPPLPERGNFDLEEVL 1005 (1012)
Q Consensus 938 i~FasVHDSFwThA~dvd~m~~ilRe~FV~Lys~~il~~l~e~f~~~~~~~~------------~p~~P~~G~LDL~~Vl 1005 (1012)
++|++|||||||||||||.|+++|||+||+|||+|||++|.++|..+|+... ||++|++|+|||++|+
T Consensus 1048 i~FasVHDSfwTHA~dvd~M~~ilRe~FV~L~s~~il~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~G~lDL~~Vl 1127 (1134)
T 3spa_A 1048 LTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQVK 1127 (1134)
T ss_dssp CCCEEETTEEEEEGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHHSCCCCCSCCGGGGG
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 97899611656571158999999999999980625799999999997066302221246788648999999974689984
Q ss_pred CCCCCCC
Q ss_conf 4788889
Q 001795 1006 ESPYFFN 1012 (1012)
Q Consensus 1006 ~S~YFF~ 1012 (1012)
+|+||||
T Consensus 1128 ~S~YFFs 1134 (1134)
T 3spa_A 1128 RSTYFFS 1134 (1134)
T ss_dssp GCTTSCC
T ss_pred CCCCCCC
T ss_conf 6888889
No 3
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=1.00 E-value=1 Score=71.72 Aligned_cols=483 Identities=14% Similarity=0.151 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 478999997516830687487999999999719-9878877888888999999989889999999999999999995553
Q 001795 486 MKKVFEALDTLGSTKWRVNKQVLSVLESIWVSG-GNIAGLVDRNDVLIPEKPLSEDMTEVQKWKWSVRKAKKINQERHSQ 564 (1012)
Q Consensus 486 l~~v~~aLN~Lqst~WrIN~~VL~vi~~~w~~g-~~i~~l~~~~~~p~P~~p~~~d~~~~~~wk~~~~~~~~~~~~~~S~ 564 (1012)
-+..-.++.+.|.+|++||..+..+....-+.+ ..+.|.- ++..| .-..+..+.-..+-+.+.+.--+.+..
T Consensus 337 ~~lqakalkkaQ~q~hrvn~~m~~~~e~LgEDalltmlGa~---~l~~e----~ln~~~RkSlEGKN~sV~rdi~~~~d~ 409 (1118)
T 3q23_A 337 TPEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGAG---TLNKE----LLNDNHAKSLEGKNRSVEDSYNQLFSV 409 (1118)
T ss_dssp CHHHHHHHHHHHHCCBEECHHHHHHHHHHHHHHHHHHHSCC---SCCTT----SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEECCCHHHHHHHHCHHHHHHHHCCC---CCCCC----CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 89999999986536815555088999985424899972766---46651----010667755410018999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCC-CCCC---CCHHHHHHHHHHHHHC
Q ss_conf 43245799999960599822202467888853579999998872100153202458-6678---1126799999966317
Q 001795 565 RCDTELKLSVARRMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDVCRGVLEFAEG-RPLG---KSGLRWLKIHLANLFS 640 (1012)
Q Consensus 565 R~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Ypi~~~Ln~qGsDl~RsLL~Faeg-kpLG---~~Gl~WLkIhlANl~G 640 (1012)
++..-++...... -.+|||++|+-=||.=-. .-+|||.+-+.|-++.=++. -.|+ +..++-|+.++|-.+|
T Consensus 410 ---iN~i~e~~~~~~~-vpIyf~y~mtrVGR~qm~-g~~NPQSsKLhRemv~pt~StV~L~~~N~~dm~~FqLgvaQslG 484 (1118)
T 3q23_A 410 ---IEQVRAQSEDIST-VPIHYAYNMTRVGRMQML-GKYNPQSAKLVREAILPTKATLDLSNQNNEDFSAFQLGLAQALD 484 (1118)
T ss_dssp ---HHHHHHHCSCGGG-CCEECCEEECTTSCEEES-SSSSTTTCHHHHTTEESCCEEECCSSTTSHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHCCCCC-CCEEEEECHHHHHHHHHC-CCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf ---9987763026445-714543100001234415-78883168999998457720764588997888899999898728
Q ss_pred CCCCCCCHHHHHHHHHHHH-----------HHHHHHCCCCCCC---CHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9977899888999999779-----------9999720599888---3466508983789999999999872399985200
Q 001795 641 GGVEKLSHDGRLAFVENHL-----------YEIFDSAENPING---SRWWLTAEDPFQCLAACINLSEALKSSSPHSVIS 706 (1012)
Q Consensus 641 ~G~DK~S~deRi~wv~~n~-----------~~I~dsA~dPl~g---~~wW~~Ad~PwQfLA~C~El~~a~~~~~P~~y~S 706 (1012)
=.+||.+-++-++=+.+-+ .+|+....-|-.- ..--.++++||-.+-+.+|+++|+...+-+.|.+
T Consensus 485 iKVeK~~~e~~~~~~~~~l~t~lkpaVdmm~eiLt~G~~d~~~~dtl~~alg~~k~fvaamA~~e~Ary~la~G~asF~T 564 (1118)
T 3q23_A 485 IKVHTMTREVMSDELTKLLEGNLKPAIDMMVEFNTTGSLPENAVDVLNTALGDRKSFVALMALMEYSRYLVAEDKSAFVT 564 (1118)
T ss_dssp CCGGGSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHSCCCTTHHHHHHHHHGGGCSHHHHHHHHHHHHHHHCSCGGGEEE
T ss_pred CCHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 64011347889999999863555278999999864677772689999998647851899999999988777468743223
Q ss_pred CCCCCCCCCCCHHHHHHH-HHCCH----------HHH-------CCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 456455788613468998-30896----------232-------013768788-76522549999999999741089999
Q 001795 707 HLPIHQDGSCNGLQHYAA-LGRNT----------LEA-------AAVNLVAGE-KPADVYSEIAVRVHEIMKRDSNKDPS 767 (1012)
Q Consensus 707 ~lPV~qDGSCNGLQHyAA-L~rD~----------~Ga-------~~VNLipsd-~P~DvYs~Va~~V~~~i~~da~~~~~ 767 (1012)
.|-+-.||--||==..=- +|.-. .|| +.+|=.-+. .--|.|..+++.+...+.....+-..
T Consensus 565 ~L~~ElDGVTNGP~Namv~~G~g~~t~~~~~nl~KgG~F~G~~g~t~N~~~~~~~n~DLYE~ts~~l~~aLg~~~~~~~~ 644 (1118)
T 3q23_A 565 PLYVEADGVTNGPINAMMLMTGGLFTPDWIRNIAKGGLFIGSPNKTMNEHRSTADNNDLYQASTNALMESLGKLRSNYAS 644 (1118)
T ss_dssp CCEEEEEETTHHHHHHHHHHCCSCCCHHHHHHHHTTTEEESCTTCCHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 04887447466379999995677678889877631302316897416666245687138999999999998776641014
Q ss_pred CCH------HH-HHHHHH----------HCCCCCCCCCCCCEEEECCCCHHHHHHHHH--------HHHHHC--------
Q ss_conf 981------68-999995----------202652222340032101652230799999--------998774--------
Q 001795 768 KHP------QA-LLAKIL----------IDQVDRKLVKQTVMTSVYGVTFVGAREQIK--------RRLEEK-------- 814 (1012)
Q Consensus 768 ~~~------~~-~~ak~l----------~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~--------~~L~~~-------- 814 (1012)
+.| .. .++-.. .-.++|++.|.|+-...||+...|+..-|. +++.+.
T Consensus 645 n~Pwq~q~~~l~sl~s~f~gd~~~~Eng~~~l~R~~aKnPlT~~~YGSg~rgia~gva~~~idtfYEKlsDv~~~r~~~~ 724 (1118)
T 3q23_A 645 NMPIQSQIDSLLSLMDLFLPDINLGENGALELKRGIAKNPLTITIYGSGARGIAGKLVSSVTDAIYERMSDVLKARAKDP 724 (1118)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEECTTCCEEECTHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 78067899999999998624230388862243233441875266526762788777788999999999887775132055
Q ss_pred ------------------------------------------C-------------CCCCH------HHHH----HHHHH
Q ss_conf ------------------------------------------8-------------99984------6588----99889
Q 001795 815 ------------------------------------------G-------------HITDD------RQLF----AAACY 829 (1012)
Q Consensus 815 ------------------------------------------g-------------~~~d~------~~~~----~~a~Y 829 (1012)
| .+.+. ..+. .+...
T Consensus 725 ~~~~~ma~~~kna~s~~~~~~~l~~~l~dm~~l~~flp~~~~~~~~~~~~~~~~~~k~~~k~F~~~~~qlk~~~~n~~~~ 804 (1118)
T 3q23_A 725 NISAAMAMFGKQAASEAHAEELLARFLKDMETLTSTVPVKRKGVLELQSTGTGAKGKINPKTYTIKGEQLKALQENMLHF 804 (1118)
T ss_dssp TCCHHHHHHTTTCSSSHHHHHHHHHHHHHHHHHHHEEEEEETTEEEEEECSCCCCSCCCTTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
T ss_conf 53456654200110144599999999998775344154664442101104764446557632442788998999988888
Q ss_pred HHHHHHHHHHHHH----HHHHH-------HH------HHHHHHHHHHHCCC--------------------------CCE
Q ss_conf 9999999999999----98999-------99------99999999998189--------------------------958
Q 001795 830 AAKVTLTALGEIF----EAARS-------IM------GWLGDCAKVIASEN--------------------------QPV 866 (1012)
Q Consensus 830 lak~v~~ai~e~f----~~A~~-------im------~WL~~~A~~i~~~~--------------------------~pV 866 (1012)
+.+.+..+|...| ..+.+ || .|=+.++...++.+ .||
T Consensus 805 ~ve~~~~~I~~TvG~~L~~atEql~~aTniQ~~~~q~~f~~~v~ek~ae~~~~~t~kk~e~Lsqk~~~~I~~eLs~laPi 884 (1118)
T 3q23_A 805 FVEPLRNGITQTVGESLVYSTEQLQKATQIQSVVLEDMFKQRVQEKLAEKAKDPTWKKGDFLTQKELNDIQASLNNLAPM 884 (1118)
T ss_dssp THHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCTTCCCBHHHHHHHHHTTGGGCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 89999999998888998865899999987899999999999999999986204555752404487899999999742521
Q ss_pred EEECCCCCEEEEEEC-CCCCEEEEEEEE-E----EEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 997489991887412-586635886359-9----9995279856556531069995202231589999999996539949
Q 001795 867 RWTTPLGLPVVQPYC-KNERHLIRTSLQ-V----LALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLHF 940 (1012)
Q Consensus 867 ~WtTP~GlpVvQ~Y~-k~~~~~I~t~lq-~----i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmmlta~~~~~~Gi~F 940 (1012)
.=+---||-+----. +..-.++.|.+- + ..+..+++ + -..|+|==-|-+=||. ||-+...+...-.+-
T Consensus 885 ~~s~sQt~~lgg~e~s~vtn~~latN~d~~~~tp~~i~~p~d-~----GVraiPf~tIgtGDam-MMq~~~~m~~aP~~~ 958 (1118)
T 3q23_A 885 IETGSQTFYIAGSENAEVANQVLATNLDDRMRVPMSIYAPAQ-A----GVAGIPFMTIGTGDGM-MMQTLSTMKGAPKNT 958 (1118)
T ss_dssp EECSSCEECTTEEEESTTTCSEEECCTTSCCCEECCEEEECC-C----TTTHHHHHHHHHTHHH-HHHHHHHSTTCCCSC
T ss_pred EECCCCEEEECCCCCCCCCCHHEECCCCCCCCCCEEECCCCC-C----CCCCCCEEEECCCHHH-HHHHHHHCCCCCHHH
T ss_conf 454871477325455420011000036886204502127899-7----6022514675065489-999997203682444
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 8840443579899468999999999976092248889999997489
Q 001795 941 AGVHDSFWTHACDVDEMNQILRKKFVELYNMPMLENLLESFQTSYP 986 (1012)
Q Consensus 941 asVHDSFwThA~dvd~m~~ilRe~FV~Lys~~il~~l~e~f~~~~~ 986 (1012)
.-|-|-+=+.-.|+..-+..+-|+-.+=...+++.++++.|..-..
T Consensus 959 L~VFDG~d~~v~~it~aS~~iNeaV~~SW~~n~~~~~~~~fskFmk 1004 (1118)
T 3q23_A 959 LKIFDGMNIGLNDITDASRKANEAVYTSWQGNPIKNVYESYAKFMK 1004 (1118)
T ss_dssp EEETTEEEEETTSHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 4303566677503767339888999876500578899999999987
No 4
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=1.00 E-value=1 Score=26.54 Aligned_cols=210 Identities=14% Similarity=0.169 Sum_probs=123.1
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 99998723999852004564557886134689983089623201376878876522549999999999741089999981
Q 001795 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770 (1012)
Q Consensus 691 El~~a~~~~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~~~~~~~ 770 (1012)
+++.++..+ .++ .-|.-|-|-==|-.+|.|.+|.....+.+ ...|||+..|..+-..-.++
T Consensus 301 ~iR~~f~a~--~G~---~lv~aDySqiElRvlAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~~~~--------- 361 (540)
T 4dfk_A 301 RIRRAFIAE--EGW---LLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVPREA--------- 361 (540)
T ss_dssp HHHTTEECC--TTE---EEEEEEETTHHHHHHHHHHCCHHHHHHHH-----TTCCHHHHHHHHHHTCCGGG---------
T ss_pred HHHHEEECC--CCC---EEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHCCCCHHH---------
T ss_conf 554337579--998---89994277789999999849999999985-----39987999999980998353---------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999995202652222340032101652230799999998774899984658899889999999999999998999999
Q 001795 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850 (1012)
Q Consensus 771 ~~~~ak~l~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~ 850 (1012)
...-.|+..|...--+.||.+.+|..+++ |+ +.+ -|+.+.+...+.||+. ..
T Consensus 362 --------v~~~~R~~aK~~~fg~~YG~~~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~v---~~ 413 (540)
T 4dfk_A 362 --------VDPLMRRAAKTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPKV---RA 413 (540)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHSTHH---HH
T ss_pred --------CCHHHHHHHHHHHHHHHHCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCHHH---HH
T ss_conf --------69999967789987455178666788871-------98-999---------9999999998869209---99
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999999981899589974899918874125866358863599999527985655653106999520223158999999
Q 001795 851 WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTA 930 (1012)
Q Consensus 851 WL~~~A~~i~~~~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmmlta 930 (1012)
|+.++.....+.| . -+|..|-...-|--. +.....|.+.--.+-|++=+=-|+-++..|
T Consensus 414 ~~~~~~~~a~~~G-y--v~Tl~GRrr~~p~~~------------------s~~~~~r~~aeR~a~N~~iQGsaAdi~K~a 472 (540)
T 4dfk_A 414 WIEKTLEEGRRRG-Y--VETLFGRRRYVPDLE------------------ARVKSVREAAERMAFNMPVQGTAADLMKLA 472 (540)
T ss_dssp HHHHHHHHHHHHS-E--EECTTCCEEECGGGG------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-C--EECCCCCEECCCCCC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999679-2--898889744277556------------------655777756435576166376999999999
Q ss_pred ---H--HHHHCCCC-EEEEECCCC--CCCCCHHHHHHHHHHHHHHH
Q ss_conf ---9--99653994-988404435--79899468999999999976
Q 001795 931 ---V--ACRDAGLH-FAGVHDSFW--THACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 931 ---~--~~~~~Gi~-FasVHDSFw--ThA~dvd~m~~ilRe~FV~L 968 (1012)
+ ...+.|.. ...|||... ++...++.+..++++.+-.-
T Consensus 473 mi~~~~~l~~~~~~l~lqVHDElv~ev~~~~~~~~~~~v~~~Me~a 518 (540)
T 4dfk_A 473 MVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEGV 518 (540)
T ss_dssp HHHHHHHHHHHTCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCEEEEEECCEEEEEECHHHHHHHHHHHHHHHHCC
T ss_conf 9999999986698699997553789827899999999999999605
No 5
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=1.00 E-value=1 Score=24.33 Aligned_cols=210 Identities=18% Similarity=0.174 Sum_probs=120.9
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 99998723999852004564557886134689983089623201376878876522549999999999741089999981
Q 001795 691 NLSEALKSSSPHSVISHLPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHP 770 (1012)
Q Consensus 691 El~~a~~~~~P~~y~S~lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~~~~~~~ 770 (1012)
+++.+... |.++ .-|.-|-|-==|-.+|.|.+|.....+-+ ...|||+..|..+-..-.++
T Consensus 365 ~iR~~f~~--~~g~---~lv~aDysqiElRilA~ls~d~~l~~af~-----~g~Dih~~tA~~~f~~~~e~--------- 425 (605)
T 2kfn_A 365 RIRQAFIA--PEDY---VIVSADYSQIELRIMAHLSRDKGLLTAFA-----EGKDIHRATAAEVFGLPLET--------- 425 (605)
T ss_dssp HHHHTBBC--CTTE---EEEEEEETTHHHHHHHHHTTCHHHHHHHH-----TTCCHHHHHHHHHTTCCGGG---------
T ss_pred HHHHEEEC--CCCC---EEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHHCCCHHH---------
T ss_conf 67643507--9997---79983233668999999817899999986-----49988999999981998464---------
Q ss_pred HHHHHHHHHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68999995202652222340032101652230799999998774899984658899889999999999999998999999
Q 001795 771 QALLAKILIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMG 850 (1012)
Q Consensus 771 ~~~~ak~l~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~ 850 (1012)
...-.|...|...--+.||.+.+|..+++ |+..++ |+.+.+...+.||+ +.+
T Consensus 426 --------vt~~~R~~aK~~~fg~~YG~~~~~la~~l-------~i~~~e----------a~~~i~~~~~~~p~---v~~ 477 (605)
T 2kfn_A 426 --------VTSEQRRSAKAINFGLIYGMSAFGLARQL-------NIPRKE----------AQKYMDLYFERYPG---VLE 477 (605)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTCCTTHHHHHH-------TCCTTT----------HHHHHHHHHHHCHH---HHH
T ss_pred --------CCHHHHHHHHHHHCCCCCCCCHHHHHHHC-------CCCHHH----------HHHHHHHHHHHCCC---HHH
T ss_conf --------69999966335220441257878999874-------989999----------99999999997934---899
Q ss_pred HHHHHHHHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHH---
Q ss_conf 99999999981899589974899918874125866358863599999527985655653106999520223158999---
Q 001795 851 WLGDCAKVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMM--- 927 (1012)
Q Consensus 851 WL~~~A~~i~~~~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmm--- 927 (1012)
|+.++.....+.| .| +|.+|-...-|--. +.....+.+.--.+-|++=+=-|+-++
T Consensus 478 ~~~~~~~~a~~~g-~v--~tl~GRrr~~p~~~------------------s~~~~~r~~~~r~a~N~~iQgsaaDi~k~a 536 (605)
T 2kfn_A 478 YMERTRAQAKEQG-YV--ETLDGRRLYLPDIK------------------SSNGARRAAAERAAINAPMQGTAADIIKRA 536 (605)
T ss_dssp HHHHHHHHHHHHS-EE--ECTTCCEEECTTTT------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CE--ECCCCCEEECCCCC------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998769-38--88889868788666------------------777002203435576387687999999999
Q ss_pred HHHH--HHHHCCCC---EEEEECCCCC--CCCCHHHHHHHHHHHHHHH
Q ss_conf 9999--99653994---9884044357--9899468999999999976
Q 001795 928 MTAV--ACRDAGLH---FAGVHDSFWT--HACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 928 lta~--~~~~~Gi~---FasVHDSFwT--hA~dvd~m~~ilRe~FV~L 968 (1012)
|..+ .+.+.|+. ...|||.... +...++.+..++++.+-.-
T Consensus 537 m~~~~~~l~~~~~~~~~~l~vHDEl~~ev~~~~~~~~~~~v~~~M~~~ 584 (605)
T 2kfn_A 537 MIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENC 584 (605)
T ss_dssp HHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCCCEEEEEECCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 999999998659983356774517999807888999999999998546
No 6
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=1.00 E-value=1 Score=21.54 Aligned_cols=197 Identities=15% Similarity=0.190 Sum_probs=102.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 56455788613468998308962320137687887652254999999999974108999998168999995202652222
Q 001795 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787 (1012)
Q Consensus 708 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~~~~~~~~~~~ak~l~~~I~RKvV 787 (1012)
.-|.-|-|-==|-.+|.|.+|.....+.+ ...|||+..|..+-..-.+ . ...-.|...
T Consensus 605 ~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~~e----~-------------vt~~~R~~a 662 (832)
T 1bgx_T 605 LLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVPRE----A-------------VDPLMRRAA 662 (832)
T ss_dssp CEEEEEESSHHHHHHHHTTTCTTHHHHHH-----HTCCHHHHHHHHHHTCCTT----S-------------CCTTHHHHH
T ss_pred EEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHHCCCHH----H-------------CCHHHHHHH
T ss_conf 79983455669999999828899999986-----4998899999998299946----4-------------699999888
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 34003210165223079999999877489998465889988999999999999999899999999999999981899589
Q 001795 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR 867 (1012)
Q Consensus 788 KqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV~ 867 (1012)
|...--++||.+.+|..+++ |+ +.+ -|+.+.+...+.||+ +.+|+.++.....+.|- |
T Consensus 663 K~~nfgi~YG~~~~gLa~~l-------gi-s~~---------eA~~~i~~~~~~~p~---v~~~~~~~~~~a~~~Gy-v- 720 (832)
T 1bgx_T 663 KTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPK---VRAWIEKTLEEGRRRGY-V- 720 (832)
T ss_dssp HHHHHHTTSCCCHHHHHHHS-------SC-CHH---------HHHHHHHHHHHHCHH---HHHHHHHHTHHHHTTSS-C-
T ss_pred HHHHHHHHCCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCCE-E-
T ss_conf 89987343089666799883-------99-999---------999999999997933---89999999999997792-8-
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEEEEEEEEC-CCCCCCHHHHHCCCCCCCCHHHHHHHHH---HHHHH--HHHCCC-CE
Q ss_conf 97489991887412586635886359999952-7985655653106999520223158999---99999--965399-49
Q 001795 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQR-EGNLVEIRKQRTAFPPNFVHSLDGSHMM---MTAVA--CRDAGL-HF 940 (1012)
Q Consensus 868 WtTP~GlpVvQ~Y~k~~~~~I~t~lq~i~l~~-~~d~vd~rKq~~Af~PNFIHSLDAsHmm---lta~~--~~~~Gi-~F 940 (1012)
+|.+|-... +.. .+.....|...--.+-|++=+=-|+-++ |..+. ..+.+. -.
T Consensus 721 -~Tl~GRrr~-------------------~p~i~s~~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~~~~~lv 780 (832)
T 1bgx_T 721 -ETLFGRRRY-------------------VPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARML 780 (832)
T ss_dssp -CCSSCCCCC-------------------CGGGSCSSHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHHTCEEE
T ss_pred -EECCCCEEE-------------------CCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf -822798897-------------------885567772013132112302743779999999999999999985797399
Q ss_pred EEEECCCCC--CCCCHHHHHHHHHHHHHHH
Q ss_conf 884044357--9899468999999999976
Q 001795 941 AGVHDSFWT--HACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 941 asVHDSFwT--hA~dvd~m~~ilRe~FV~L 968 (1012)
..|||.... +...++.+..++++.+-.-
T Consensus 781 lqVHDElv~evp~~~~~~~~~~v~~~M~~a 810 (832)
T 1bgx_T 781 LQVHDELVLEAPKERAEAVARLAKEVMEGV 810 (832)
T ss_dssp EEETTEEEEEC----CHHHHHHHHHHHHSS
T ss_pred EEECCEEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 986427899847889999999999998516
No 7
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=1.00 E-value=1 Score=21.10 Aligned_cols=198 Identities=15% Similarity=0.168 Sum_probs=115.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 56455788613468998308962320137687887652254999999999974108999998168999995202652222
Q 001795 708 LPIHQDGSCNGLQHYAALGRNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKILIDQVDRKLV 787 (1012)
Q Consensus 708 lPV~qDGSCNGLQHyAAL~rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~~~~~~~~~~~ak~l~~~I~RKvV 787 (1012)
.-|.-|-|-==|-.+|.|.+|.....+-+ ...|||+..|..+-..- . +. ...-.|+..
T Consensus 364 ~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~---~--~~------------vt~~~R~~a 421 (592)
T 3pv8_A 364 LIFAADYSQIELRVLAHIAEDDNLMEAFR-----RDLDIHTKTAMDIFQVS---E--DE------------VTPNMRRQA 421 (592)
T ss_dssp EEEEEEETTHHHHHHHHHHTCHHHHHHHH-----TTCCHHHHHHHHHHSCC---T--TT------------CCHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHCCCHHHHHHHH-----CCCCHHHHHHHHHHCCC---H--HH------------CCHHHHHHH
T ss_conf 89985344679999999848999999985-----39987899999982889---5--64------------799999788
Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 34003210165223079999999877489998465889988999999999999999899999999999999981899589
Q 001795 788 KQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCAKVIASENQPVR 867 (1012)
Q Consensus 788 KqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV~ 867 (1012)
|...--+.||.+.+|..+++ |+ +.+ -|+.+.+...+.||+. ..|+.++.....+.| .|
T Consensus 422 K~~~fg~~YG~~~~~La~~l-------~i-~~~---------eA~~~i~~~~~~~p~v---~~~~~~~~~~a~~~G-yv- 479 (592)
T 3pv8_A 422 KAVNYGIVYGISDYGLAQNL-------NI-SRK---------EAAEFIERYFESFPGV---KRYMENIVQEAKQKG-YV- 479 (592)
T ss_dssp HHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHCHHH---HHHHHHHHHHHHHHS-EE-
T ss_pred HHHHHHHHHCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCHHH---HHHHHHHHHHHHHCC-CE-
T ss_conf 99999787468857899882-------99-999---------9999999999979009---999999999999749-88-
Q ss_pred EECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHH---H--HHHHCCC---C
Q ss_conf 974899918874125866358863599999527985655653106999520223158999999---9--9965399---4
Q 001795 868 WTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMMMTA---V--ACRDAGL---H 939 (1012)
Q Consensus 868 WtTP~GlpVvQ~Y~k~~~~~I~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmmlta---~--~~~~~Gi---~ 939 (1012)
+|.+|-...-|-- .+.....|.+.--.+-|++=+=-|+-++..| + .+.+.|+ -
T Consensus 480 -~Tl~GRrr~~p~i------------------~s~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~~~~~~l 540 (592)
T 3pv8_A 480 -TTLLHRRRYLPDI------------------TSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHL 540 (592)
T ss_dssp -ECTTCCEEECGGG------------------GCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred -ECCCCCEEECCCC------------------CCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf -7888985427775------------------664665651321446134103489999999999999999965998347
Q ss_pred EEEEECCC--CCCCCCHHHHHHHHHHHHHHH
Q ss_conf 98840443--579899468999999999976
Q 001795 940 FAGVHDSF--WTHACDVDEMNQILRKKFVEL 968 (1012)
Q Consensus 940 FasVHDSF--wThA~dvd~m~~ilRe~FV~L 968 (1012)
...|||.. =++...++.+..++++.+-.-
T Consensus 541 ~lqVHDElv~ev~~~~~~~~~~~v~~~Me~a 571 (592)
T 3pv8_A 541 LLQVHDELILEAPKEEMERLCRLVPEVMEQA 571 (592)
T ss_dssp EEECSSEEEEEEEGGGHHHHHHHHHHHHHTS
T ss_pred EEEECCEEEEEECHHHHHHHHHHHHHHHHHC
T ss_conf 8998563689807899999999999999605
No 8
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=1.00 E-value=1 Score=16.02 Aligned_cols=187 Identities=14% Similarity=0.060 Sum_probs=102.0
Q ss_pred CCCCEECCCCCCCCCCCHHHHHHHHH---CCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 98520045645578861346899830---896232013768788765225499999999997410899999816899999
Q 001795 701 PHSVISHLPIHQDGSCNGLQHYAALG---RNTLEAAAVNLVAGEKPADVYSEIAVRVHEIMKRDSNKDPSKHPQALLAKI 777 (1012)
Q Consensus 701 P~~y~S~lPV~qDGSCNGLQHyAAL~---rD~~Ga~~VNLipsd~P~DvYs~Va~~V~~~i~~da~~~~~~~~~~~~ak~ 777 (1012)
|+++ .-|.-|-|-==|-.+|.|. +|.....+.+ .+ |||+..|. +- +
T Consensus 460 ~~G~---~lv~aDySqiElRilAhls~~~~D~~l~~af~--~g----DiH~~tA~-~~---------g------------ 508 (698)
T 1x9m_A 460 GKPW---VQAGIDASGLELRCLAHFMARFDNGEYAHEIL--NG----DIHTKNQI-AA---------E------------ 508 (698)
T ss_dssp CCBC---EEEEEEETTHHHHHHHHHHHHHHTTHHHHHHH--HS----CHHHHHHH-HS---------C------------
T ss_pred CCCC---EEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHH--CC----CHHHHHHH-HH---------C------------
T ss_conf 9997---89997532448999999861238599999886--79----87699999-81---------9------------
Q ss_pred HHCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 5202652222340032101652230799999998774899984658899889999999999999998999999999999-
Q 001795 778 LIDQVDRKLVKQTVMTSVYGVTFVGAREQIKRRLEEKGHITDDRQLFAAACYAAKVTLTALGEIFEAARSIMGWLGDCA- 856 (1012)
Q Consensus 778 l~~~I~RKvVKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~Ylak~v~~ai~e~f~~A~~im~WL~~~A- 856 (1012)
.-.|+..|...--+.||.+..|..+++ |+ +.+ -|+.+.+...+.||+.+...+.+.+.+
T Consensus 509 ---v~~R~~aK~~nfg~~YG~g~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~v~~~~~~~~~~~~ 568 (698)
T 1x9m_A 509 ---LPTRDNAKTFIYGFLYGAGDEKIGQIV-------GA-GKE---------RGKELKKKFLENTPAIAALRESIQQTLV 568 (698)
T ss_dssp ---CSSHHHHHHHHHHHHTTCCHHHHHTTT-------TC-CHH---------HHHHHHHHHHHTCHHHHHHHHHHHHTTB
T ss_pred ---CCHHHHHHHHHHCCCCCCCHHHHHHHC-------CC-CHH---------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf ---842756689997001189777999882-------98-999---------9999999999979378888877676541
Q ss_pred -------HHHHCCCCCEEEECCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHHH--
Q ss_conf -------99981899589974899918874125866358863599999527985655653106999520223158999--
Q 001795 857 -------KVIASENQPVRWTTPLGLPVVQPYCKNERHLIRTSLQVLALQREGNLVEIRKQRTAFPPNFVHSLDGSHMM-- 927 (1012)
Q Consensus 857 -------~~i~~~~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~i~l~~~~d~vd~rKq~~Af~PNFIHSLDAsHmm-- 927 (1012)
+.+......=..+|++|-.. .++. .| .+-|++=+=-|+-++
T Consensus 569 ~~~~~~~~~~~~a~~~gyv~tl~GRrr-------------------~~r~------~r-----~a~N~~iQGsaAdi~k~ 618 (698)
T 1x9m_A 569 ESSQWVAGEQQVKWKRRWIKGLDGRKV-------------------HVRS------PH-----AALNTLLQSAGALICKL 618 (698)
T ss_dssp C----------CCBSCSEEECTTSCEE-------------------ECSC------GG-----GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCEEECCCCCEE-------------------ECCC------HH-----HHHHHHHHHHHHHHHHH
T ss_conf 003679999999986892882588755-------------------2455------05-----57556646899999999
Q ss_pred -HHHH--HHHHCCC--------C-EEEEECCCCCCCC--C-HHHHHHHHHHHHHHH
Q ss_conf -9999--9965399--------4-9884044357989--9-468999999999976
Q 001795 928 -MTAV--ACRDAGL--------H-FAGVHDSFWTHAC--D-VDEMNQILRKKFVEL 968 (1012)
Q Consensus 928 -lta~--~~~~~Gi--------~-FasVHDSFwThA~--d-vd~m~~ilRe~FV~L 968 (1012)
|..+ .+.+.|+ . ...|||......- + ++.+..++++.+-.-
T Consensus 619 am~~i~~~l~~~~~~~~~~~~~~lvl~VHDElv~ev~~~~~~~~~~~~~~~~M~~a 674 (698)
T 1x9m_A 619 WIIKTEEMLVEKGLKHGWDGDFAYMAWVHDEIQVGCRTEEIAQVVIETAQEAMRWV 674 (698)
T ss_dssp HHHHHHHHHHHTTCCBSTTSSEEEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999986488756676626998865389998063567999999999999754
No 9
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Probab=1.00 E-value=1 Score=15.17 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=9.5
Q ss_pred CCCCCCCHHHH
Q ss_conf 55788613468
Q 001795 711 HQDGSCNGLQH 721 (1012)
Q Consensus 711 ~qDGSCNGLQH 721 (1012)
..|||||-++|
T Consensus 9 t~DG~cNNl~~ 19 (104)
T 1d2v_A 9 TITGMCNNRRS 19 (104)
T ss_dssp CSSCTTSSSSS
T ss_pred CCCCCCCCCCC
T ss_conf 88877358898
No 10
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=1.00 E-value=1 Score=14.14 Aligned_cols=13 Identities=54% Similarity=0.649 Sum_probs=6.8
Q ss_pred HHHHCCCCCCCCC
Q ss_conf 1532024586678
Q 001795 612 RGVLEFAEGRPLG 624 (1012)
Q Consensus 612 RsLL~FaegkpLG 624 (1012)
.|.++|..|+-|=
T Consensus 29 ~G~FeFd~Gkill 41 (78)
T 2jro_A 29 LGRLEFEKGRFLL 41 (78)
T ss_dssp TEEEEEETTEECC
T ss_pred CCCEEECCCEEEC
T ss_conf 1127874988858
Done!