Query 001796
Match_columns 1012
No_of_seqs 562 out of 3673
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:31:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 4.1E-51 8.8E-56 514.2 57.5 611 347-1001 31-767 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.3E-47 2.8E-52 482.8 54.7 604 349-1006 76-819 (2102)
3 COG5064 SRP1 Karyopherin (impo 100.0 3.6E-33 7.7E-38 285.5 30.6 419 463-962 72-503 (526)
4 KOG0166 Karyopherin (importin) 100.0 1.2E-32 2.7E-37 306.3 35.4 409 464-957 68-488 (514)
5 KOG4224 Armadillo repeat prote 100.0 1.1E-33 2.3E-38 291.8 20.5 439 462-958 85-525 (550)
6 KOG4224 Armadillo repeat prote 100.0 6.4E-32 1.4E-36 278.7 26.5 462 433-1001 25-496 (550)
7 KOG0166 Karyopherin (importin) 100.0 8.8E-29 1.9E-33 275.6 32.4 407 426-912 77-487 (514)
8 COG5064 SRP1 Karyopherin (impo 100.0 8.6E-28 1.9E-32 246.2 23.5 413 506-1007 73-505 (526)
9 PF05804 KAP: Kinesin-associat 99.9 5.6E-24 1.2E-28 250.9 36.6 383 475-957 262-651 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.6E-23 3.5E-28 247.0 35.3 383 428-911 262-649 (708)
11 KOG1048 Neural adherens juncti 99.9 7.8E-20 1.7E-24 210.2 26.3 429 463-966 234-695 (717)
12 PF04564 U-box: U-box domain; 99.8 7.8E-22 1.7E-26 166.8 5.3 72 258-329 1-72 (73)
13 KOG1048 Neural adherens juncti 99.8 2.7E-18 5.8E-23 197.6 24.6 382 417-810 234-697 (717)
14 KOG2122 Beta-catenin-binding p 99.8 1.2E-18 2.6E-23 205.9 21.9 353 430-840 209-603 (2195)
15 KOG4500 Rho/Rac GTPase guanine 99.7 6.1E-15 1.3E-19 156.9 30.0 409 459-911 84-519 (604)
16 KOG1222 Kinesin associated pro 99.7 8.2E-14 1.8E-18 149.8 30.1 381 476-957 277-665 (791)
17 KOG2122 Beta-catenin-binding p 99.6 6E-15 1.3E-19 175.2 21.2 360 481-912 213-602 (2195)
18 KOG4199 Uncharacterized conser 99.6 5.9E-13 1.3E-17 138.0 32.1 346 350-796 81-445 (461)
19 smart00504 Ubox Modified RING 99.6 2.2E-16 4.8E-21 130.7 5.3 63 261-324 1-63 (63)
20 KOG4199 Uncharacterized conser 99.6 2.3E-13 4.9E-18 141.0 27.3 324 453-836 95-442 (461)
21 KOG1222 Kinesin associated pro 99.6 2.8E-13 6.1E-18 145.8 26.2 378 433-912 281-664 (791)
22 KOG4500 Rho/Rac GTPase guanine 99.6 6.7E-13 1.5E-17 141.5 25.2 410 501-955 84-519 (604)
23 PF10508 Proteasom_PSMB: Prote 99.5 3.4E-11 7.4E-16 142.0 33.7 396 466-944 42-451 (503)
24 KOG1293 Proteins containing ar 99.4 1.4E-11 3E-16 139.0 23.5 483 470-999 17-534 (678)
25 PF04826 Arm_2: Armadillo-like 99.4 1.7E-11 3.7E-16 129.7 18.8 194 412-617 8-205 (254)
26 PF10508 Proteasom_PSMB: Prote 99.4 2E-10 4.3E-15 135.5 27.6 396 376-793 41-463 (503)
27 PRK09687 putative lyase; Provi 99.3 8.4E-11 1.8E-15 127.5 21.9 255 545-952 23-279 (280)
28 PF04826 Arm_2: Armadillo-like 99.3 7.7E-11 1.7E-15 124.8 20.5 195 501-710 9-206 (254)
29 PRK13800 putative oxidoreducta 99.3 5.3E-10 1.2E-14 141.3 28.9 274 505-907 622-895 (897)
30 PRK09687 putative lyase; Provi 99.3 3.3E-10 7E-15 122.9 21.9 255 462-835 23-279 (280)
31 PRK13800 putative oxidoreducta 99.3 7.1E-10 1.5E-14 140.2 27.0 210 683-995 687-896 (897)
32 KOG2171 Karyopherin (importin) 99.3 3.4E-08 7.3E-13 119.0 39.1 499 386-954 16-545 (1075)
33 KOG2171 Karyopherin (importin) 99.3 2.6E-08 5.6E-13 120.0 38.0 429 374-838 37-504 (1075)
34 KOG1293 Proteins containing ar 99.3 3.4E-09 7.3E-14 120.1 28.3 472 349-837 27-532 (678)
35 PF01602 Adaptin_N: Adaptin N 99.2 1.1E-08 2.3E-13 123.6 32.8 492 387-998 19-524 (526)
36 KOG4642 Chaperone-dependent E3 99.2 1.1E-09 2.4E-14 109.5 17.0 83 249-331 199-281 (284)
37 PF01602 Adaptin_N: Adaptin N 99.1 1.1E-08 2.4E-13 123.4 26.3 426 386-952 91-521 (526)
38 cd00020 ARM Armadillo/beta-cat 99.0 3.1E-09 6.7E-14 100.4 12.8 115 460-574 5-120 (120)
39 cd00020 ARM Armadillo/beta-cat 99.0 5.1E-09 1.1E-13 98.9 13.7 117 719-837 3-119 (120)
40 PF15227 zf-C3HC4_4: zinc fing 99.0 2.3E-10 5.1E-15 84.7 3.4 39 264-302 1-42 (42)
41 PLN03208 E3 ubiquitin-protein 99.0 4.2E-10 9.1E-15 110.5 3.9 65 254-318 11-90 (193)
42 cd00256 VATPase_H VATPase_H, r 98.9 5.3E-07 1.2E-11 101.8 27.3 351 462-954 53-424 (429)
43 PTZ00429 beta-adaptin; Provisi 98.9 2.3E-05 5E-10 95.4 41.4 366 462-911 68-433 (746)
44 COG5113 UFD2 Ubiquitin fusion 98.9 1E-08 2.2E-13 114.3 10.6 133 172-329 789-922 (929)
45 PTZ00429 beta-adaptin; Provisi 98.9 5.2E-05 1.1E-09 92.4 43.3 502 377-999 36-547 (746)
46 TIGR00599 rad18 DNA repair pro 98.8 3.8E-09 8.3E-14 117.0 6.1 69 259-328 24-92 (397)
47 cd00256 VATPase_H VATPase_H, r 98.8 2.7E-07 5.9E-12 104.1 20.6 353 420-794 57-424 (429)
48 KOG0168 Putative ubiquitin fus 98.8 1.3E-06 2.8E-11 101.5 25.5 258 463-777 168-437 (1051)
49 KOG2042 Ubiquitin fusion degra 98.8 3E-08 6.6E-13 118.6 12.7 75 254-329 863-938 (943)
50 KOG0168 Putative ubiquitin fus 98.8 6.1E-07 1.3E-11 104.1 21.3 247 517-821 181-438 (1051)
51 PF11789 zf-Nse: Zinc-finger o 98.7 4E-09 8.6E-14 83.5 1.9 44 260-303 10-55 (57)
52 KOG0946 ER-Golgi vesicle-tethe 98.7 6E-05 1.3E-09 87.5 34.4 399 382-798 31-475 (970)
53 KOG2023 Nuclear transport rece 98.7 3.2E-06 6.9E-11 95.9 23.7 476 417-956 129-692 (885)
54 PF13923 zf-C3HC4_2: Zinc fing 98.6 3.5E-08 7.5E-13 72.4 3.0 38 264-302 1-39 (39)
55 KOG0946 ER-Golgi vesicle-tethe 98.5 0.00061 1.3E-08 79.5 36.5 332 317-667 20-400 (970)
56 PF03224 V-ATPase_H_N: V-ATPas 98.5 2.4E-06 5.3E-11 95.1 17.3 223 504-777 55-294 (312)
57 PF03224 V-ATPase_H_N: V-ATPas 98.5 8.2E-07 1.8E-11 98.9 13.4 224 463-732 56-292 (312)
58 PF05536 Neurochondrin: Neuroc 98.5 8.7E-05 1.9E-09 88.1 30.9 242 462-710 5-262 (543)
59 PF13445 zf-RING_UBOX: RING-ty 98.5 6.3E-08 1.4E-12 71.6 2.1 36 264-300 1-43 (43)
60 KOG2759 Vacuolar H+-ATPase V1 98.4 2.2E-05 4.8E-10 85.6 20.6 290 637-955 116-438 (442)
61 KOG2160 Armadillo/beta-catenin 98.4 7.6E-06 1.6E-10 88.2 17.0 185 648-836 94-280 (342)
62 PF14835 zf-RING_6: zf-RING of 98.3 1.5E-07 3.3E-12 74.1 1.3 58 261-321 7-65 (65)
63 PF00097 zf-C3HC4: Zinc finger 98.3 4.6E-07 1E-11 67.4 3.3 39 264-302 1-41 (41)
64 KOG3678 SARM protein (with ste 98.3 1.5E-05 3.2E-10 86.9 15.0 268 672-955 172-452 (832)
65 KOG2023 Nuclear transport rece 98.2 3.9E-05 8.5E-10 87.3 18.1 114 461-575 127-245 (885)
66 KOG1241 Karyopherin (importin) 98.2 0.00047 1E-08 80.3 26.0 485 420-1001 6-533 (859)
67 KOG0287 Postreplication repair 98.2 5.6E-07 1.2E-11 93.5 2.4 68 260-328 22-89 (442)
68 PHA02929 N1R/p28-like protein; 98.2 1.4E-06 3E-11 90.2 4.2 49 258-307 171-227 (238)
69 PF13920 zf-C3HC4_3: Zinc fing 98.2 1.3E-06 2.8E-11 68.1 3.0 47 260-307 1-48 (50)
70 KOG3678 SARM protein (with ste 98.2 9.1E-05 2E-09 80.9 17.8 210 475-710 235-453 (832)
71 KOG1241 Karyopherin (importin) 98.2 0.00088 1.9E-08 78.1 26.7 344 461-821 318-692 (859)
72 KOG1062 Vesicle coat complex A 98.2 0.0024 5.2E-08 75.1 30.3 423 430-949 122-575 (866)
73 KOG0823 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 87.5 3.0 59 259-317 45-105 (230)
74 KOG2160 Armadillo/beta-catenin 98.1 7.2E-05 1.6E-09 80.8 16.2 188 735-957 94-284 (342)
75 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00014 3.1E-09 79.4 17.9 349 420-795 69-438 (442)
76 COG5215 KAP95 Karyopherin (imp 98.0 0.0017 3.7E-08 73.2 25.1 430 424-956 14-480 (858)
77 KOG0213 Splicing factor 3b, su 98.0 0.0037 8.1E-08 72.4 28.0 415 463-955 637-1065(1172)
78 KOG0212 Uncharacterized conser 98.0 0.00051 1.1E-08 77.4 20.7 356 542-956 81-445 (675)
79 TIGR02270 conserved hypothetic 98.0 0.00075 1.6E-08 77.1 22.8 242 462-838 54-296 (410)
80 KOG1059 Vesicle coat complex A 98.0 0.0051 1.1E-07 71.4 28.8 272 463-776 145-423 (877)
81 KOG1824 TATA-binding protein-i 98.0 0.0062 1.3E-07 72.7 28.9 439 428-956 583-1037(1233)
82 cd00162 RING RING-finger (Real 98.0 7.3E-06 1.6E-10 62.2 3.6 43 263-305 1-44 (45)
83 KOG4413 26S proteasome regulat 98.0 0.0055 1.2E-07 64.7 25.6 361 463-836 83-482 (524)
84 TIGR02270 conserved hypothetic 97.9 0.00047 1E-08 78.7 19.6 118 682-836 88-205 (410)
85 PF13639 zf-RING_2: Ring finge 97.9 3.6E-06 7.8E-11 63.6 1.7 40 263-303 2-44 (44)
86 KOG2177 Predicted E3 ubiquitin 97.9 5.3E-06 1.1E-10 93.9 3.9 68 259-329 11-78 (386)
87 COG5432 RAD18 RING-finger-cont 97.9 5.3E-06 1.1E-10 84.5 3.1 66 261-327 25-90 (391)
88 KOG4413 26S proteasome regulat 97.9 0.0031 6.8E-08 66.5 22.9 370 513-956 91-485 (524)
89 KOG1062 Vesicle coat complex A 97.9 0.0057 1.2E-07 72.0 27.3 299 467-838 112-414 (866)
90 KOG0213 Splicing factor 3b, su 97.9 0.016 3.6E-07 67.3 30.1 466 465-1000 556-1067(1172)
91 KOG4646 Uncharacterized conser 97.9 6.4E-05 1.4E-09 69.0 8.8 131 462-597 16-148 (173)
92 KOG1789 Endocytosis protein RM 97.8 0.0028 6E-08 75.7 23.2 338 477-821 1740-2142(2235)
93 KOG0317 Predicted E3 ubiquitin 97.8 1.3E-05 2.8E-10 82.9 3.8 56 255-311 233-288 (293)
94 KOG1824 TATA-binding protein-i 97.8 0.0082 1.8E-07 71.7 26.7 295 512-842 701-1040(1233)
95 KOG2973 Uncharacterized conser 97.8 0.0011 2.4E-08 69.7 17.5 290 464-789 5-309 (353)
96 PF05536 Neurochondrin: Neuroc 97.8 0.0075 1.6E-07 71.8 27.1 403 378-796 10-494 (543)
97 smart00184 RING Ring finger. E 97.8 2.1E-05 4.5E-10 57.4 3.4 39 264-302 1-39 (39)
98 COG5215 KAP95 Karyopherin (imp 97.8 0.017 3.6E-07 65.5 27.1 271 636-956 134-438 (858)
99 KOG0311 Predicted E3 ubiquitin 97.8 5E-06 1.1E-10 87.9 -0.4 67 259-325 41-109 (381)
100 KOG1789 Endocytosis protein RM 97.8 0.008 1.7E-07 72.0 25.3 336 432-779 1742-2143(2235)
101 PHA02926 zinc finger-like prot 97.7 2.2E-05 4.7E-10 78.1 3.6 55 258-314 167-235 (242)
102 KOG1242 Protein containing ada 97.7 0.0083 1.8E-07 69.3 24.7 340 462-836 96-442 (569)
103 KOG0320 Predicted E3 ubiquitin 97.7 1.6E-05 3.5E-10 76.1 2.3 52 261-313 131-184 (187)
104 KOG2973 Uncharacterized conser 97.7 0.0053 1.1E-07 64.8 20.7 276 507-836 6-313 (353)
105 KOG4646 Uncharacterized conser 97.7 0.00025 5.4E-09 65.2 9.3 129 767-931 17-146 (173)
106 PF00514 Arm: Armadillo/beta-c 97.7 4.4E-05 9.6E-10 56.7 3.6 41 534-574 1-41 (41)
107 PF00514 Arm: Armadillo/beta-c 97.6 0.0001 2.3E-09 54.7 4.8 40 798-837 1-40 (41)
108 COG1413 FOG: HEAT repeat [Ener 97.6 0.027 5.9E-07 63.6 26.7 278 462-834 43-331 (335)
109 PF14664 RICTOR_N: Rapamycin-i 97.6 0.015 3.2E-07 65.9 23.4 235 546-795 26-269 (371)
110 COG1413 FOG: HEAT repeat [Ener 97.5 0.026 5.6E-07 63.8 25.7 250 504-836 43-302 (335)
111 PF05659 RPW8: Arabidopsis bro 97.5 0.002 4.3E-08 62.4 13.8 110 9-122 12-122 (147)
112 PF14664 RICTOR_N: Rapamycin-i 97.5 0.015 3.2E-07 65.9 22.6 304 387-707 38-362 (371)
113 TIGR00570 cdk7 CDK-activating 97.5 0.00014 3E-09 77.7 6.0 53 260-312 2-59 (309)
114 KOG1060 Vesicle coat complex A 97.5 0.051 1.1E-06 64.1 26.3 427 420-956 39-497 (968)
115 PF14634 zf-RING_5: zinc-RING 97.4 0.00011 2.4E-09 55.4 3.1 41 263-304 1-44 (44)
116 KOG1061 Vesicle coat complex A 97.4 0.017 3.6E-07 68.4 21.8 327 462-836 86-413 (734)
117 KOG1242 Protein containing ada 97.4 0.013 2.9E-07 67.7 20.5 283 654-998 151-444 (569)
118 KOG0978 E3 ubiquitin ligase in 97.4 0.029 6.3E-07 66.6 23.8 53 261-313 643-695 (698)
119 KOG1060 Vesicle coat complex A 97.3 0.26 5.6E-06 58.5 29.6 168 377-574 39-209 (968)
120 KOG1059 Vesicle coat complex A 97.2 0.023 5E-07 66.2 20.1 218 636-912 145-366 (877)
121 COG5574 PEX10 RING-finger-cont 97.2 0.00017 3.7E-09 73.8 2.8 51 258-308 212-263 (271)
122 COG5231 VMA13 Vacuolar H+-ATPa 97.2 0.011 2.4E-07 62.4 15.8 256 689-954 158-427 (432)
123 PF13646 HEAT_2: HEAT repeats; 97.2 0.0012 2.6E-08 58.3 7.1 86 464-570 1-88 (88)
124 PF13646 HEAT_2: HEAT repeats; 97.1 0.0019 4E-08 57.0 8.0 87 725-834 1-88 (88)
125 KOG0297 TNF receptor-associate 97.1 0.0004 8.7E-09 79.0 4.0 67 258-325 18-86 (391)
126 KOG2259 Uncharacterized conser 97.1 0.045 9.8E-07 63.3 19.9 257 636-952 199-472 (823)
127 COG5181 HSH155 U2 snRNP splice 97.1 0.11 2.4E-06 59.6 22.5 263 633-955 602-870 (975)
128 COG5369 Uncharacterized conser 97.0 0.025 5.5E-07 63.7 17.1 302 481-793 408-739 (743)
129 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00069 1.5E-08 57.3 3.9 43 259-303 18-73 (73)
130 KOG1061 Vesicle coat complex A 96.9 0.031 6.7E-07 66.2 17.6 305 418-753 123-453 (734)
131 KOG2164 Predicted E3 ubiquitin 96.9 0.00058 1.2E-08 76.6 3.4 55 260-314 185-243 (513)
132 KOG2660 Locus-specific chromos 96.9 0.00051 1.1E-08 72.8 2.7 65 258-323 12-81 (331)
133 COG5222 Uncharacterized conser 96.9 0.0011 2.4E-08 68.2 5.0 68 261-328 274-343 (427)
134 KOG0212 Uncharacterized conser 96.9 0.066 1.4E-06 61.0 18.7 347 415-836 83-442 (675)
135 PF10165 Ric8: Guanine nucleot 96.8 0.12 2.5E-06 60.5 21.7 238 473-711 43-339 (446)
136 KOG4159 Predicted E3 ubiquitin 96.8 0.00073 1.6E-08 75.6 3.3 72 255-327 78-154 (398)
137 KOG0211 Protein phosphatase 2A 96.8 0.34 7.5E-06 59.2 25.8 446 478-996 214-662 (759)
138 KOG4535 HEAT and armadillo rep 96.8 0.073 1.6E-06 59.4 17.7 303 653-998 271-603 (728)
139 KOG2259 Uncharacterized conser 96.8 0.044 9.5E-07 63.4 16.6 210 728-956 203-440 (823)
140 COG5181 HSH155 U2 snRNP splice 96.8 0.054 1.2E-06 62.0 17.0 258 505-838 605-870 (975)
141 smart00185 ARM Armadillo/beta- 96.7 0.0024 5.1E-08 47.1 4.4 40 535-574 2-41 (41)
142 KOG0567 HEAT repeat-containing 96.7 0.22 4.8E-06 51.9 19.8 262 464-794 5-279 (289)
143 COG5369 Uncharacterized conser 96.6 0.0083 1.8E-07 67.4 9.6 120 718-838 426-545 (743)
144 KOG0211 Protein phosphatase 2A 96.6 0.13 2.8E-06 62.8 20.5 406 387-836 250-662 (759)
145 COG5240 SEC21 Vesicle coat com 96.6 0.22 4.8E-06 56.8 20.4 126 430-576 205-334 (898)
146 KOG2734 Uncharacterized conser 96.6 0.12 2.6E-06 57.3 17.7 220 370-596 122-371 (536)
147 KOG2734 Uncharacterized conser 96.6 0.25 5.3E-06 55.0 19.9 266 658-956 105-401 (536)
148 PF10165 Ric8: Guanine nucleot 96.5 0.14 3.1E-06 59.8 19.2 262 527-838 4-337 (446)
149 smart00185 ARM Armadillo/beta- 96.5 0.0065 1.4E-07 44.8 5.2 38 800-837 3-40 (41)
150 KOG1078 Vesicle coat complex C 96.2 0.35 7.5E-06 57.5 20.0 326 430-795 187-532 (865)
151 KOG1077 Vesicle coat complex A 96.2 1 2.2E-05 53.0 23.2 102 724-837 330-432 (938)
152 KOG0289 mRNA splicing factor [ 96.2 0.0025 5.3E-08 69.6 2.3 51 262-313 1-52 (506)
153 PF13513 HEAT_EZ: HEAT-like re 96.2 0.0087 1.9E-07 47.5 5.0 55 780-836 1-55 (55)
154 PF12348 CLASP_N: CLASP N term 96.2 0.023 4.9E-07 60.3 9.7 183 647-838 17-206 (228)
155 KOG0567 HEAT repeat-containing 96.1 0.42 9.1E-06 49.9 17.7 202 632-910 64-279 (289)
156 PF12861 zf-Apc11: Anaphase-pr 96.0 0.0065 1.4E-07 51.8 3.6 47 261-307 32-82 (85)
157 KOG1517 Guanine nucleotide bin 96.0 0.072 1.6E-06 64.7 13.1 224 742-999 488-733 (1387)
158 PF12348 CLASP_N: CLASP N term 96.0 0.023 4.9E-07 60.3 8.2 183 733-956 16-207 (228)
159 KOG1002 Nucleotide excision re 95.9 0.0088 1.9E-07 66.5 4.9 50 260-309 535-588 (791)
160 COG5096 Vesicle coat complex, 95.8 0.26 5.6E-06 59.7 16.9 167 689-911 28-195 (757)
161 PF12460 MMS19_C: RNAPII trans 95.8 2.4 5.1E-05 49.4 24.7 361 547-956 1-395 (415)
162 PF13513 HEAT_EZ: HEAT-like re 95.7 0.034 7.4E-07 44.1 6.5 54 739-793 2-55 (55)
163 PF09759 Atx10homo_assoc: Spin 95.7 0.032 6.9E-07 50.1 6.8 67 741-808 3-71 (102)
164 KOG1077 Vesicle coat complex A 95.6 0.78 1.7E-05 53.9 18.9 106 881-999 328-434 (938)
165 PF11841 DUF3361: Domain of un 95.6 0.18 4E-06 49.0 11.8 125 674-800 5-136 (160)
166 KOG1943 Beta-tubulin folding c 95.6 3.7 8E-05 51.1 25.1 356 462-836 341-745 (1133)
167 KOG1813 Predicted E3 ubiquitin 95.5 0.005 1.1E-07 64.2 0.9 46 261-307 241-286 (313)
168 KOG1943 Beta-tubulin folding c 95.5 6 0.00013 49.3 26.5 235 544-794 340-610 (1133)
169 KOG4151 Myosin assembly protei 95.4 0.14 3E-06 61.2 12.4 244 534-836 493-739 (748)
170 KOG4151 Myosin assembly protei 95.3 0.17 3.7E-06 60.4 12.9 202 672-911 496-699 (748)
171 KOG2979 Protein involved in DN 95.3 0.015 3.1E-07 59.9 3.6 46 260-305 175-222 (262)
172 PF04641 Rtf2: Rtf2 RING-finge 95.3 0.014 3E-07 62.9 3.5 53 259-313 111-167 (260)
173 KOG1517 Guanine nucleotide bin 95.2 0.49 1.1E-05 57.9 16.0 241 654-912 484-733 (1387)
174 KOG0414 Chromosome condensatio 95.1 1.4 3.1E-05 55.0 19.8 151 810-1010 920-1076(1251)
175 KOG0915 Uncharacterized conser 95.0 5.9 0.00013 51.1 25.1 393 428-842 1009-1431(1702)
176 KOG1058 Vesicle coat complex C 95.0 3 6.5E-05 49.7 21.1 219 682-956 245-464 (948)
177 KOG3039 Uncharacterized conser 95.0 0.014 3.1E-07 58.9 2.3 35 260-294 42-76 (303)
178 KOG0802 E3 ubiquitin ligase [P 94.9 0.011 2.4E-07 70.8 1.8 46 260-306 290-340 (543)
179 COG5231 VMA13 Vacuolar H+-ATPa 94.9 1.1 2.4E-05 47.9 15.7 235 470-707 157-426 (432)
180 KOG1078 Vesicle coat complex C 94.8 13 0.00028 45.0 29.5 250 725-999 247-533 (865)
181 KOG0824 Predicted E3 ubiquitin 94.8 0.015 3.4E-07 60.8 2.0 50 261-310 7-56 (324)
182 KOG0915 Uncharacterized conser 94.6 11 0.00023 48.9 25.9 322 634-1000 955-1308(1702)
183 PF09759 Atx10homo_assoc: Spin 94.6 0.11 2.4E-06 46.7 6.7 62 653-715 2-65 (102)
184 KOG4367 Predicted Zn-finger pr 94.4 0.015 3.3E-07 63.1 0.9 32 260-291 3-34 (699)
185 KOG4628 Predicted E3 ubiquitin 94.4 0.028 6.2E-07 61.4 3.0 46 262-307 230-278 (348)
186 PF11698 V-ATPase_H_C: V-ATPas 94.4 0.067 1.5E-06 49.3 5.0 73 881-955 42-115 (119)
187 KOG1240 Protein kinase contain 94.4 0.73 1.6E-05 57.4 14.9 258 652-957 438-727 (1431)
188 PF11841 DUF3361: Domain of un 94.3 1.1 2.3E-05 43.9 13.3 127 580-714 5-136 (160)
189 COG5240 SEC21 Vesicle coat com 94.1 2.5 5.4E-05 48.7 17.4 309 465-819 267-579 (898)
190 COG5152 Uncharacterized conser 94.1 0.022 4.7E-07 55.5 1.3 45 261-306 196-240 (259)
191 KOG0826 Predicted E3 ubiquitin 93.9 0.039 8.4E-07 58.6 2.7 50 258-308 297-347 (357)
192 KOG3036 Protein involved in ce 93.8 3.4 7.3E-05 42.9 16.1 177 654-836 96-289 (293)
193 PRK14707 hypothetical protein; 93.5 39 0.00084 45.7 38.7 393 414-833 245-650 (2710)
194 KOG0804 Cytoplasmic Zn-finger 93.5 0.026 5.7E-07 62.2 0.7 45 260-307 174-222 (493)
195 KOG3039 Uncharacterized conser 93.4 0.061 1.3E-06 54.5 3.0 53 260-313 220-276 (303)
196 KOG1248 Uncharacterized conser 93.4 30 0.00065 44.0 26.7 145 686-836 744-896 (1176)
197 KOG2879 Predicted E3 ubiquitin 93.0 0.08 1.7E-06 54.9 3.2 49 259-307 237-287 (298)
198 PF13764 E3_UbLigase_R4: E3 ub 92.6 7.3 0.00016 48.4 19.8 259 500-775 80-385 (802)
199 PF05004 IFRD: Interferon-rela 92.5 5.7 0.00012 44.1 17.3 190 509-708 48-256 (309)
200 COG5096 Vesicle coat complex, 92.5 2.7 5.8E-05 51.3 15.6 162 739-956 35-196 (757)
201 COG5540 RING-finger-containing 92.5 0.1 2.2E-06 54.7 3.1 48 261-308 323-373 (374)
202 PF04078 Rcd1: Cell differenti 92.4 9.4 0.0002 40.5 17.4 230 517-836 8-260 (262)
203 PF08045 CDC14: Cell division 92.1 1.1 2.5E-05 47.4 10.5 98 520-617 107-207 (257)
204 PF04063 DUF383: Domain of unk 92.0 0.93 2E-05 46.2 9.5 125 691-819 6-157 (192)
205 PF04063 DUF383: Domain of unk 91.8 0.84 1.8E-05 46.5 8.9 123 474-596 7-157 (192)
206 KOG3036 Protein involved in ce 91.7 3.2 6.9E-05 43.1 12.6 145 522-669 97-250 (293)
207 COG5243 HRD1 HRD ubiquitin lig 91.6 0.14 3E-06 55.1 3.1 47 259-306 285-344 (491)
208 KOG1240 Protein kinase contain 91.6 2.8 6.1E-05 52.5 14.3 279 475-795 436-725 (1431)
209 PF04078 Rcd1: Cell differenti 91.5 4.2 9.1E-05 43.0 13.8 198 475-677 8-227 (262)
210 KOG2062 26S proteasome regulat 91.2 11 0.00024 45.1 18.0 129 683-836 522-651 (929)
211 PF12755 Vac14_Fab1_bd: Vacuol 91.1 0.49 1.1E-05 42.4 5.7 68 544-616 26-95 (97)
212 PF02985 HEAT: HEAT repeat; I 91.0 0.36 7.8E-06 33.1 3.7 28 811-838 2-29 (31)
213 KOG1788 Uncharacterized conser 90.8 23 0.0005 43.9 20.2 456 470-955 475-982 (2799)
214 PF11701 UNC45-central: Myosin 90.8 1.3 2.8E-05 43.8 9.0 148 724-909 4-157 (157)
215 PRK14707 hypothetical protein; 90.4 84 0.0018 42.8 36.4 431 376-836 166-612 (2710)
216 PF08045 CDC14: Cell division 90.2 2.2 4.7E-05 45.4 10.4 80 876-957 127-209 (257)
217 KOG2817 Predicted E3 ubiquitin 90.1 0.21 4.6E-06 54.9 2.9 43 261-303 334-381 (394)
218 KOG2999 Regulator of Rac1, req 90.1 6.4 0.00014 45.4 14.4 164 548-718 86-251 (713)
219 PF07814 WAPL: Wings apart-lik 90.0 13 0.00028 42.4 17.3 227 516-766 34-312 (361)
220 PF05004 IFRD: Interferon-rela 89.9 16 0.00034 40.6 17.5 190 637-836 45-255 (309)
221 KOG2611 Neurochondrin/leucine- 89.9 15 0.00033 41.7 16.8 129 467-597 16-163 (698)
222 KOG4535 HEAT and armadillo rep 89.8 0.59 1.3E-05 52.4 5.9 186 740-956 407-604 (728)
223 KOG1058 Vesicle coat complex C 89.6 10 0.00022 45.6 15.8 242 459-773 240-487 (948)
224 PF13764 E3_UbLigase_R4: E3 ub 89.4 23 0.00051 44.1 19.9 183 499-691 112-330 (802)
225 PF11698 V-ATPase_H_C: V-ATPas 89.2 0.65 1.4E-05 42.9 4.9 71 462-532 43-114 (119)
226 PF12460 MMS19_C: RNAPII trans 89.2 50 0.0011 38.4 27.9 341 465-838 2-394 (415)
227 KOG0883 Cyclophilin type, U bo 88.9 0.26 5.7E-06 53.4 2.5 53 260-313 39-91 (518)
228 PF02891 zf-MIZ: MIZ/SP-RING z 88.9 0.4 8.6E-06 37.1 2.8 45 261-305 2-50 (50)
229 KOG1645 RING-finger-containing 88.9 0.17 3.6E-06 55.5 1.0 60 261-320 4-69 (463)
230 PF11793 FANCL_C: FANCL C-term 88.3 0.12 2.7E-06 43.1 -0.3 47 261-307 2-66 (70)
231 PF12755 Vac14_Fab1_bd: Vacuol 87.9 1.7 3.7E-05 39.0 6.7 65 766-832 27-91 (97)
232 KOG3113 Uncharacterized conser 87.8 0.43 9.3E-06 48.9 3.0 49 260-311 110-162 (293)
233 PF08569 Mo25: Mo25-like; Int 87.7 12 0.00027 41.8 14.7 200 372-578 75-287 (335)
234 PF11701 UNC45-central: Myosin 87.6 1.3 2.8E-05 43.8 6.3 136 474-614 17-156 (157)
235 PF06025 DUF913: Domain of Unk 87.5 13 0.00027 42.6 15.0 130 455-584 99-243 (379)
236 PF12717 Cnd1: non-SMC mitotic 87.5 1.6 3.5E-05 44.2 7.1 92 822-956 1-93 (178)
237 PF12717 Cnd1: non-SMC mitotic 87.2 1.6 3.5E-05 44.1 7.0 91 738-838 2-92 (178)
238 KOG1734 Predicted RING-contain 87.0 0.17 3.6E-06 52.2 -0.4 53 260-312 223-286 (328)
239 PF02985 HEAT: HEAT repeat; I 86.7 0.87 1.9E-05 31.2 3.2 28 547-574 2-29 (31)
240 COG5116 RPN2 26S proteasome re 86.6 4.4 9.5E-05 46.7 10.2 129 684-837 520-649 (926)
241 PF14668 RICTOR_V: Rapamycin-i 85.7 2.1 4.6E-05 36.0 5.5 66 521-586 4-70 (73)
242 KOG2062 26S proteasome regulat 84.9 6.7 0.00015 46.9 10.9 98 766-911 554-653 (929)
243 KOG2274 Predicted importin 9 [ 84.4 1.1E+02 0.0023 38.3 20.6 262 692-998 503-780 (1005)
244 COG5627 MMS21 DNA repair prote 84.2 0.61 1.3E-05 47.2 2.0 48 261-308 189-240 (275)
245 smart00744 RINGv The RING-vari 84.0 1.2 2.7E-05 34.3 3.2 40 264-303 2-49 (49)
246 KOG2274 Predicted importin 9 [ 83.6 1.3E+02 0.0028 37.6 22.0 233 473-717 461-697 (1005)
247 COG5109 Uncharacterized conser 83.3 0.75 1.6E-05 48.6 2.3 43 261-303 336-383 (396)
248 PF14570 zf-RING_4: RING/Ubox 83.3 1.2 2.6E-05 33.9 2.7 43 264-306 1-47 (48)
249 KOG1832 HIV-1 Vpr-binding prot 83.1 46 0.001 40.9 16.7 106 693-810 675-786 (1516)
250 PF05918 API5: Apoptosis inhib 82.9 4.1 9E-05 48.2 8.4 41 473-518 70-110 (556)
251 KOG2999 Regulator of Rac1, req 82.8 22 0.00048 41.2 13.6 153 768-956 85-243 (713)
252 PF08569 Mo25: Mo25-like; Int 82.7 88 0.0019 35.1 20.6 256 559-839 13-284 (335)
253 PF07814 WAPL: Wings apart-lik 82.7 62 0.0013 36.8 17.7 202 464-670 23-303 (361)
254 PF12719 Cnd3: Nuclear condens 82.1 32 0.0007 37.9 14.9 108 462-574 26-143 (298)
255 KOG1785 Tyrosine kinase negati 81.8 0.7 1.5E-05 50.3 1.5 48 263-310 371-419 (563)
256 KOG1039 Predicted E3 ubiquitin 81.5 0.9 2E-05 50.3 2.2 49 259-307 159-221 (344)
257 KOG4692 Predicted E3 ubiquitin 79.6 1.4 3E-05 47.4 2.7 48 259-307 420-467 (489)
258 PF14447 Prok-RING_4: Prokaryo 79.6 1.2 2.7E-05 34.6 1.7 46 261-309 7-52 (55)
259 PF06371 Drf_GBD: Diaphanous G 78.8 12 0.00027 37.9 9.5 81 493-573 96-186 (187)
260 PF12031 DUF3518: Domain of un 78.3 9.8 0.00021 39.7 8.2 91 604-695 140-231 (257)
261 KOG2025 Chromosome condensatio 78.3 57 0.0012 39.3 15.2 92 650-749 98-189 (892)
262 KOG1001 Helicase-like transcri 78.2 0.59 1.3E-05 56.9 -0.5 46 262-308 455-501 (674)
263 PF12719 Cnd3: Nuclear condens 77.6 80 0.0017 34.8 16.2 161 426-599 38-210 (298)
264 PF05918 API5: Apoptosis inhib 77.6 13 0.00027 44.2 10.0 120 650-791 35-158 (556)
265 KOG0414 Chromosome condensatio 76.7 11 0.00025 47.5 9.6 142 682-840 921-1066(1251)
266 COG5175 MOT2 Transcriptional r 76.2 1.7 3.8E-05 46.3 2.3 49 261-310 15-67 (480)
267 KOG4172 Predicted E3 ubiquitin 76.0 0.98 2.1E-05 34.6 0.3 45 262-306 8-53 (62)
268 KOG3161 Predicted E3 ubiquitin 75.4 1.6 3.4E-05 50.7 1.8 59 260-321 10-76 (861)
269 KOG0828 Predicted E3 ubiquitin 74.4 1.7 3.8E-05 48.8 1.8 34 275-308 602-635 (636)
270 KOG1020 Sister chromatid cohes 73.7 3.1E+02 0.0068 36.5 31.1 108 461-576 815-923 (1692)
271 KOG1832 HIV-1 Vpr-binding prot 73.7 1.6E+02 0.0035 36.5 17.4 164 759-964 594-782 (1516)
272 COG5219 Uncharacterized conser 73.2 1.4 3.1E-05 53.2 0.8 45 262-306 1470-1522(1525)
273 KOG3800 Predicted E3 ubiquitin 72.5 2.6 5.6E-05 44.6 2.4 31 278-308 22-52 (300)
274 PF04641 Rtf2: Rtf2 RING-finge 72.5 3.8 8.2E-05 44.3 3.9 36 260-295 33-69 (260)
275 KOG0827 Predicted E3 ubiquitin 72.4 3 6.5E-05 45.7 3.0 49 261-309 4-58 (465)
276 smart00638 LPD_N Lipoprotein N 71.7 34 0.00073 41.8 12.4 133 683-835 396-542 (574)
277 KOG3665 ZYG-1-like serine/thre 71.6 1.1E+02 0.0024 38.0 16.6 170 660-833 494-692 (699)
278 KOG1967 DNA repair/transcripti 71.5 49 0.0011 41.0 12.9 151 503-705 866-1020(1030)
279 KOG1788 Uncharacterized conser 71.4 1.3E+02 0.0028 38.0 15.9 109 396-514 664-784 (2799)
280 COG0497 RecN ATPase involved i 71.2 2.3E+02 0.005 33.9 19.0 158 28-205 172-338 (557)
281 COG5116 RPN2 26S proteasome re 71.1 13 0.00028 43.1 7.6 126 679-823 550-676 (926)
282 KOG0396 Uncharacterized conser 71.1 2.2 4.7E-05 46.7 1.6 49 261-309 330-381 (389)
283 KOG2611 Neurochondrin/leucine- 70.9 92 0.002 35.8 13.9 183 737-955 24-225 (698)
284 KOG1248 Uncharacterized conser 70.7 3.2E+02 0.007 35.3 26.0 233 727-998 657-898 (1176)
285 KOG0825 PHD Zn-finger protein 70.6 1 2.2E-05 53.3 -1.0 49 260-309 122-173 (1134)
286 KOG2956 CLIP-associating prote 70.5 1.7E+02 0.0037 33.8 16.0 174 636-832 330-506 (516)
287 KOG4653 Uncharacterized conser 70.4 36 0.00078 41.8 11.4 192 506-715 729-924 (982)
288 PF01347 Vitellogenin_N: Lipop 69.8 27 0.00059 43.0 11.2 171 636-835 396-586 (618)
289 PF06025 DUF913: Domain of Unk 69.7 70 0.0015 36.6 13.4 101 719-821 101-208 (379)
290 KOG1967 DNA repair/transcripti 68.4 26 0.00056 43.3 9.7 149 634-789 866-1018(1030)
291 PF14668 RICTOR_V: Rapamycin-i 68.2 16 0.00035 30.8 5.8 58 899-959 4-62 (73)
292 COG5194 APC11 Component of SCF 67.9 4 8.7E-05 34.2 2.1 32 274-306 48-80 (88)
293 KOG2114 Vacuolar assembly/sort 67.4 42 0.00091 41.2 11.1 43 258-304 837-880 (933)
294 PF05605 zf-Di19: Drought indu 67.3 10 0.00022 29.8 4.4 33 260-304 1-39 (54)
295 smart00638 LPD_N Lipoprotein N 66.6 89 0.0019 38.1 14.6 169 767-994 358-541 (574)
296 PF12031 DUF3518: Domain of un 65.2 18 0.00038 37.9 6.6 80 519-598 139-228 (257)
297 PF06371 Drf_GBD: Diaphanous G 65.1 10 0.00022 38.6 5.1 76 876-954 101-186 (187)
298 PF08324 PUL: PUL domain; Int 64.9 16 0.00035 39.5 7.0 131 474-604 122-261 (268)
299 KOG2032 Uncharacterized conser 64.3 1.4E+02 0.003 34.7 13.8 139 689-833 267-411 (533)
300 PF11707 Npa1: Ribosome 60S bi 62.0 2.7E+02 0.0058 31.2 20.9 173 682-855 58-253 (330)
301 KOG1493 Anaphase-promoting com 61.8 3.5 7.6E-05 34.2 0.7 47 261-307 31-81 (84)
302 KOG2032 Uncharacterized conser 61.5 2.3E+02 0.005 33.0 14.9 73 502-575 252-330 (533)
303 COG5209 RCD1 Uncharacterized p 60.5 46 0.001 34.3 8.4 145 655-804 118-275 (315)
304 TIGR00634 recN DNA repair prot 60.3 3.9E+02 0.0084 32.5 20.3 153 33-205 181-342 (563)
305 PF11864 DUF3384: Domain of un 60.0 2.3E+02 0.005 33.5 15.8 251 559-836 43-328 (464)
306 PF08167 RIX1: rRNA processing 59.3 48 0.001 33.0 8.5 69 463-533 26-97 (165)
307 PF08324 PUL: PUL domain; Int 58.6 1.1E+02 0.0024 33.1 12.0 154 510-670 69-235 (268)
308 KOG1820 Microtubule-associated 58.0 1.4E+02 0.0029 37.7 13.6 106 462-574 336-443 (815)
309 PF12530 DUF3730: Protein of u 57.3 2.1E+02 0.0046 30.3 13.5 126 428-573 14-150 (234)
310 PF14726 RTTN_N: Rotatin, an a 56.4 47 0.001 29.8 7.0 69 501-569 27-95 (98)
311 KOG3665 ZYG-1-like serine/thre 56.0 53 0.0011 40.8 9.8 195 747-953 494-695 (699)
312 COG5218 YCG1 Chromosome conden 55.6 2.9E+02 0.0064 32.8 14.6 107 636-755 92-198 (885)
313 KOG4362 Transcriptional regula 55.1 4.9 0.00011 48.2 0.7 64 260-323 20-85 (684)
314 KOG0298 DEAD box-containing he 54.9 3.6 7.9E-05 52.1 -0.4 43 260-303 1152-1195(1394)
315 PF14225 MOR2-PAG1_C: Cell mor 53.5 2.4E+02 0.0051 30.5 13.1 67 503-573 187-253 (262)
316 cd03568 VHS_STAM VHS domain fa 53.5 39 0.00085 32.8 6.6 72 767-838 38-110 (144)
317 KOG0301 Phospholipase A2-activ 53.0 1.9E+02 0.004 34.9 12.8 164 430-603 559-733 (745)
318 PF11791 Aconitase_B_N: Aconit 52.3 31 0.00066 33.4 5.4 28 883-910 95-122 (154)
319 PF01347 Vitellogenin_N: Lipop 51.3 66 0.0014 39.6 9.9 168 418-612 397-584 (618)
320 cd03561 VHS VHS domain family; 51.2 82 0.0018 30.0 8.4 72 767-838 38-112 (133)
321 PF14446 Prok-RING_1: Prokaryo 50.6 13 0.00029 29.1 2.2 33 261-296 5-41 (54)
322 KOG2025 Chromosome condensatio 50.5 4.1E+02 0.0088 32.5 15.0 72 544-617 84-155 (892)
323 PF12252 SidE: Dot/Icm substra 50.0 5.7E+02 0.012 32.8 16.5 125 10-144 938-1083(1439)
324 KOG1020 Sister chromatid cohes 49.2 83 0.0018 41.4 9.9 139 681-836 817-958 (1692)
325 PF13811 DUF4186: Domain of un 49.0 11 0.00023 34.1 1.7 44 273-326 64-110 (111)
326 cd03569 VHS_Hrs_Vps27p VHS dom 48.0 56 0.0012 31.6 6.7 72 767-838 42-114 (142)
327 KOG1571 Predicted E3 ubiquitin 47.8 10 0.00022 41.6 1.7 47 256-306 300-346 (355)
328 COG5209 RCD1 Uncharacterized p 47.8 26 0.00055 36.0 4.3 97 739-836 115-216 (315)
329 PF10272 Tmpp129: Putative tra 46.8 13 0.00029 41.5 2.4 37 274-310 301-354 (358)
330 PLN02189 cellulose synthase 46.8 13 0.00029 46.9 2.6 48 260-307 33-87 (1040)
331 KOG1991 Nuclear transport rece 45.4 1.4E+02 0.0031 37.5 10.8 112 766-912 410-533 (1010)
332 cd03567 VHS_GGA VHS domain fam 45.2 63 0.0014 31.1 6.5 72 767-838 39-116 (139)
333 KOG2956 CLIP-associating prote 44.3 5.7E+02 0.012 29.8 14.4 144 767-955 330-477 (516)
334 PF11791 Aconitase_B_N: Aconit 43.7 46 0.00099 32.2 5.1 46 520-575 79-124 (154)
335 KOG1820 Microtubule-associated 43.6 1.6E+02 0.0035 37.1 11.2 125 467-601 258-386 (815)
336 PF10367 Vps39_2: Vacuolar sor 43.3 55 0.0012 29.6 5.7 36 254-289 71-108 (109)
337 cd03568 VHS_STAM VHS domain fa 43.1 96 0.0021 30.1 7.5 75 634-710 36-111 (144)
338 KOG1991 Nuclear transport rece 43.0 1.5E+02 0.0033 37.4 10.5 120 634-757 409-536 (1010)
339 PF08167 RIX1: rRNA processing 42.8 94 0.002 30.9 7.6 108 683-793 28-141 (165)
340 PLN02195 cellulose synthase A 42.3 19 0.00041 45.3 3.0 45 263-307 8-59 (977)
341 KOG4185 Predicted E3 ubiquitin 42.3 18 0.0004 39.9 2.7 51 274-324 22-77 (296)
342 KOG2930 SCF ubiquitin ligase, 42.2 18 0.00038 32.1 1.9 27 278-305 80-106 (114)
343 cd03569 VHS_Hrs_Vps27p VHS dom 42.1 51 0.0011 31.9 5.4 68 683-750 44-111 (142)
344 KOG4718 Non-SMC (structural ma 42.0 16 0.00034 37.0 1.8 46 262-308 182-228 (235)
345 KOG4653 Uncharacterized conser 41.8 5.8E+02 0.013 32.1 14.8 182 555-755 737-920 (982)
346 cd03561 VHS VHS domain family; 41.5 74 0.0016 30.3 6.4 69 683-751 40-110 (133)
347 PF10363 DUF2435: Protein of u 40.7 64 0.0014 28.6 5.3 70 507-577 6-75 (92)
348 PF11864 DUF3384: Domain of un 40.5 6.8E+02 0.015 29.5 16.5 31 695-733 230-260 (464)
349 COG5098 Chromosome condensatio 39.7 59 0.0013 39.0 6.2 141 683-840 895-1039(1128)
350 PF12830 Nipped-B_C: Sister ch 39.0 3.9E+02 0.0084 27.1 11.6 67 505-576 9-76 (187)
351 KOG4265 Predicted E3 ubiquitin 38.4 20 0.00044 39.5 2.1 46 261-307 290-336 (349)
352 KOG4464 Signaling protein RIC- 38.2 3E+02 0.0066 31.3 10.9 136 683-820 48-198 (532)
353 KOG0413 Uncharacterized conser 37.5 70 0.0015 39.9 6.4 105 883-999 969-1074(1529)
354 PRK11088 rrmA 23S rRNA methylt 37.5 15 0.00033 39.9 1.1 27 261-287 2-31 (272)
355 PF12074 DUF3554: Domain of un 37.0 3.2E+02 0.007 30.6 11.8 199 502-713 20-239 (339)
356 PF14353 CpXC: CpXC protein 36.7 20 0.00044 33.9 1.7 46 261-306 1-48 (128)
357 smart00288 VHS Domain present 36.3 1.9E+02 0.0041 27.6 8.3 72 767-838 38-111 (133)
358 PLN02436 cellulose synthase A 35.4 26 0.00056 44.5 2.6 48 260-307 35-89 (1094)
359 KOG2137 Protein kinase [Signal 34.6 2.5E+02 0.0054 34.4 10.3 133 461-599 388-521 (700)
360 smart00288 VHS Domain present 34.4 79 0.0017 30.2 5.3 67 683-749 40-107 (133)
361 KOG1848 Uncharacterized conser 33.9 4.4E+02 0.0096 34.9 12.6 113 634-753 839-958 (1610)
362 PF05883 Baculo_RING: Baculovi 33.5 28 0.00062 32.9 2.0 44 261-305 26-78 (134)
363 PF10363 DUF2435: Protein of u 32.9 90 0.002 27.7 5.0 82 464-554 5-86 (92)
364 cd03567 VHS_GGA VHS domain fam 32.7 1.8E+02 0.0039 28.1 7.4 75 634-710 37-117 (139)
365 PF06416 DUF1076: Protein of u 32.6 37 0.0008 30.8 2.4 55 254-309 32-93 (113)
366 PLN02638 cellulose synthase A 32.3 31 0.00068 43.9 2.7 47 261-307 17-70 (1079)
367 PF12530 DUF3730: Protein of u 32.2 6.3E+02 0.014 26.7 16.4 129 650-796 14-152 (234)
368 KOG2933 Uncharacterized conser 32.1 1.4E+02 0.0029 32.7 6.9 135 686-836 94-232 (334)
369 smart00531 TFIIE Transcription 31.5 31 0.00068 33.6 2.1 38 259-308 97-135 (147)
370 PF05290 Baculo_IE-1: Baculovi 31.1 52 0.0011 30.9 3.2 49 260-308 79-133 (140)
371 PF06160 EzrA: Septation ring 30.6 1.1E+03 0.023 28.8 16.8 59 95-153 190-251 (560)
372 PRK10869 recombination and rep 30.4 1.1E+03 0.023 28.7 21.5 154 34-206 178-338 (553)
373 KOG3002 Zn finger protein [Gen 30.3 46 0.001 36.5 3.3 47 258-308 45-92 (299)
374 PF11865 DUF3385: Domain of un 30.2 5.4E+02 0.012 25.4 10.6 143 547-707 12-155 (160)
375 PF12830 Nipped-B_C: Sister ch 30.0 3.5E+02 0.0076 27.4 9.6 60 426-495 19-78 (187)
376 cd08329 CARD_BIRC2_BIRC3 Caspa 29.7 1.3E+02 0.0028 26.8 5.5 62 28-90 7-69 (94)
377 PF14500 MMS19_N: Dos2-interac 29.7 7.4E+02 0.016 26.7 16.7 222 549-797 3-239 (262)
378 KOG1940 Zn-finger protein [Gen 29.5 34 0.00075 36.7 2.1 43 261-304 158-204 (276)
379 PF13251 DUF4042: Domain of un 29.4 5.5E+02 0.012 26.0 10.6 113 722-838 38-174 (182)
380 PF11865 DUF3385: Domain of un 29.0 4.7E+02 0.01 25.8 10.0 28 809-836 128-155 (160)
381 COG5218 YCG1 Chromosome conden 28.8 1.3E+02 0.0028 35.6 6.5 98 881-989 90-190 (885)
382 PF14663 RasGEF_N_2: Rapamycin 28.6 1.2E+02 0.0027 28.1 5.4 39 546-584 9-47 (115)
383 KOG1243 Protein kinase [Genera 28.4 4.5E+02 0.0097 32.1 11.0 150 674-836 363-513 (690)
384 KOG1243 Protein kinase [Genera 28.2 1.9E+02 0.004 35.2 7.9 71 460-533 328-398 (690)
385 COG5098 Chromosome condensatio 28.0 1.2E+03 0.026 28.7 25.2 130 778-956 908-1038(1128)
386 cd03572 ENTH_epsin_related ENT 27.6 4.6E+02 0.01 24.6 8.9 70 929-999 41-120 (122)
387 cd03572 ENTH_epsin_related ENT 27.2 3E+02 0.0066 25.8 7.6 70 767-836 39-117 (122)
388 PLN02915 cellulose synthase A 27.1 42 0.00091 42.7 2.6 48 260-307 14-68 (1044)
389 PF08216 CTNNBL: Catenin-beta- 27.1 61 0.0013 29.6 2.9 40 523-562 65-104 (108)
390 KOG1814 Predicted E3 ubiquitin 27.0 61 0.0013 36.4 3.5 60 260-323 183-252 (445)
391 PF00790 VHS: VHS domain; Int 26.9 1.3E+02 0.0029 28.8 5.6 72 767-838 43-118 (140)
392 PF14225 MOR2-PAG1_C: Cell mor 26.6 8.3E+02 0.018 26.3 16.6 163 766-976 60-238 (262)
393 cd08330 CARD_ASC_NALP1 Caspase 26.6 2.8E+02 0.006 24.0 6.9 52 33-85 4-55 (82)
394 KOG0825 PHD Zn-finger protein 26.6 74 0.0016 38.6 4.2 64 255-333 90-165 (1134)
395 PF08216 CTNNBL: Catenin-beta- 26.5 1.1E+02 0.0024 28.0 4.4 40 562-601 63-102 (108)
396 KOG0413 Uncharacterized conser 25.9 1.7E+02 0.0036 36.8 7.0 126 695-836 946-1071(1529)
397 KOG1812 Predicted E3 ubiquitin 25.9 46 0.001 38.1 2.5 45 260-304 145-198 (384)
398 PHA02825 LAP/PHD finger-like p 25.8 77 0.0017 30.9 3.5 48 260-308 7-60 (162)
399 PF00790 VHS: VHS domain; Int 25.6 76 0.0016 30.6 3.6 66 683-748 45-113 (140)
400 PRK12495 hypothetical protein; 25.5 1.1E+02 0.0024 31.5 4.7 14 259-272 40-53 (226)
401 COG3813 Uncharacterized protei 25.3 67 0.0015 26.5 2.5 34 278-314 26-59 (84)
402 cd08324 CARD_NOD1_CARD4 Caspas 25.3 4.4E+02 0.0094 23.0 7.4 73 33-114 4-76 (85)
403 PHA02862 5L protein; Provision 25.1 54 0.0012 31.3 2.3 57 263-326 4-66 (156)
404 PF01726 LexA_DNA_bind: LexA D 25.0 2E+02 0.0042 23.7 5.3 42 152-199 11-52 (65)
405 COG3937 Uncharacterized conser 24.8 5.4E+02 0.012 23.5 8.9 84 120-203 13-101 (108)
406 KOG4464 Signaling protein RIC- 24.8 1.1E+03 0.024 27.1 17.5 104 474-577 109-234 (532)
407 KOG4275 Predicted E3 ubiquitin 24.3 18 0.00039 38.4 -1.1 39 261-306 300-341 (350)
408 PF14726 RTTN_N: Rotatin, an a 23.6 2E+02 0.0044 25.8 5.6 68 882-952 30-97 (98)
409 PF09723 Zn-ribbon_8: Zinc rib 23.5 20 0.00043 26.6 -0.7 32 259-304 3-34 (42)
410 PF14569 zf-UDP: Zinc-binding 23.5 81 0.0017 26.7 2.7 48 261-308 9-63 (80)
411 PF08506 Cse1: Cse1; InterPro 23.4 5.6E+02 0.012 29.3 10.5 129 694-833 225-370 (370)
412 PF04499 SAPS: SIT4 phosphatas 23.1 3.9E+02 0.0084 31.7 9.4 83 712-794 51-147 (475)
413 cd08050 TAF6 TATA Binding Prot 22.7 3.9E+02 0.0085 30.1 9.1 137 469-615 185-338 (343)
414 PRK10807 paraquat-inducible pr 22.6 7.5E+02 0.016 29.9 11.9 81 12-93 415-500 (547)
415 KOG1566 Conserved protein Mo25 22.3 1.1E+03 0.023 26.1 14.9 201 370-577 76-289 (342)
416 KOG2137 Protein kinase [Signal 22.0 2.6E+02 0.0056 34.2 7.6 135 679-823 388-522 (700)
417 PF08506 Cse1: Cse1; InterPro 21.5 8.6E+02 0.019 27.7 11.6 127 430-569 226-370 (370)
418 TIGR02605 CxxC_CxxC_SSSS putat 21.4 32 0.00069 26.7 0.0 25 278-304 10-34 (52)
419 cd00350 rubredoxin_like Rubred 21.1 78 0.0017 22.0 1.9 10 296-305 17-26 (33)
420 cd00730 rubredoxin Rubredoxin; 20.7 43 0.00094 25.9 0.6 13 257-269 30-42 (50)
421 PF00619 CARD: Caspase recruit 20.6 4.1E+02 0.0089 22.6 7.0 61 33-94 5-66 (85)
422 PF10521 DUF2454: Protein of u 20.4 5.9E+02 0.013 27.7 9.7 52 462-513 119-171 (282)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.1e-51 Score=514.23 Aligned_cols=611 Identities=17% Similarity=0.206 Sum_probs=499.8
Q ss_pred hHHHHHHHHHHHHhhccccchhHhc-cCchHHHHHHhccCCCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccc
Q 001796 347 SELEALDQMQDLMRESSINKDWISI-GGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCL 425 (1012)
Q Consensus 347 ~~~~~l~~l~~l~~~~~~~r~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL 425 (1012)
...+++.+++.+.+.++.||.++.+ .|++|.|+.+|.+ ++..++..|+..|..++.. +++|..|+..|++|+|+.+|
T Consensus 31 ~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL 108 (2102)
T PLN03200 31 EKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLL 108 (2102)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHH
Confidence 4567899999999999999998875 8999999999976 6788999999999999975 78999999999999999999
Q ss_pred cc-CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCChhhHHHHh
Q 001796 426 GR-DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPV---RESAECAEKILQQLFDVDEENFCRAA 501 (1012)
Q Consensus 426 ~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~La~~~~~~~~~i~ 501 (1012)
.+ +...+++|+++|.+++.++.+ +.....++...|+||.|+.++++++ ..++..|+.+|+||+..++.....+.
T Consensus 109 ~sGs~eaKe~AA~AL~sLS~~~~~--D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~II 186 (2102)
T PLN03200 109 KSGSAEAQKAAAEAIYAVSSGGLS--DHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATL 186 (2102)
T ss_pred HCCCHHHHHHHHHHHHHHHcCcch--hhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHH
Confidence 65 457889999999999986421 1222356677899999999999864 23567788999999977766667789
Q ss_pred hcCCcHHHHHHHhcCChHHHHHHHHHHHhcccc-cchhhHhhhcCChHHHHhhhcCC-ChhHHHHHHHHHHHhcCC-Cch
Q 001796 502 KSGWYKPLIDRIIQGAESSRILMMKALLSMELV-DSNLELLGKEGIIPPLLGLVGSG-NFQSKELSLSVLVKLSGC-SKN 578 (1012)
Q Consensus 502 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~ 578 (1012)
+.|++|.|+.+|+++++..+.+|+.+|.+++.+ ++.+..+++.|+||.|+++|+++ ++.+++.|+++|.||+.+ +++
T Consensus 187 eaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~ 266 (2102)
T PLN03200 187 EAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEA 266 (2102)
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHH
Confidence 999999999999999999999999999988875 66899999999999999999865 468999999999999975 788
Q ss_pred HHHHHHcCChHHHHHHhhcCCC-------ChhHHHHHHHHHHHhhccCcc--------------c------------e--
Q 001796 579 RELISAAGGIPQVLELMFSSHV-------PSNIIVKCSEILEKLSSDGIK--------------F------------L-- 623 (1012)
Q Consensus 579 ~~~i~~~g~i~~Lv~lL~~~~~-------~~~~~~~a~~~L~nLa~~~~~--------------~------------~-- 623 (1012)
+..+++.|+||+|++++.+... ....+++|+|+|.|+|.+... . .
T Consensus 267 r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~ 346 (2102)
T PLN03200 267 KQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALM 346 (2102)
T ss_pred HHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHH
Confidence 9999999999999999986432 234579999999999983111 0 0
Q ss_pred -ecccC---Ccc------------------------------------------chhHHHHHHHHHHhccCCChhhHHHH
Q 001796 624 -VDEKG---NRL------------------------------------------ELEPIVTNLLTLQQNFNSSYNVRKPA 657 (1012)
Q Consensus 624 -~~~~g---~~l------------------------------------------~~~~~v~~Ll~ll~~~~~~~~~~~~a 657 (1012)
.+... ..+ ...++++.|++++..++ .+.++++
T Consensus 347 l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~--~evQ~~A 424 (2102)
T PLN03200 347 VFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT--ADVQEEL 424 (2102)
T ss_pred hcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC--HHHHHHH
Confidence 00000 000 00112233444444433 5689999
Q ss_pred HHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCc
Q 001796 658 LRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAK 737 (1012)
Q Consensus 658 l~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~ 737 (1012)
+++|+++|.++.+ .++.|.+.|+++.|+++|.+++..++..|++++++++...+ +....+.+.|++|+|+++|+++ +
T Consensus 425 v~aL~~L~~~~~e-~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~-~ 501 (2102)
T PLN03200 425 IRALSSLCCGKGG-LWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETG-S 501 (2102)
T ss_pred HHHHHHHhCCCHH-HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCC-C
Confidence 9999999987655 67999999999999999999999999999999999997643 4445678999999999999987 6
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHH---------------H-
Q 001796 738 HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLE---------------A- 801 (1012)
Q Consensus 738 ~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~---------------~- 801 (1012)
.++++.|+++|+||+.++.+.+..+.++|++|+|+++|+++++++++.|+++|.+++...+.+ .
T Consensus 502 ~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~ 581 (2102)
T PLN03200 502 QKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESK 581 (2102)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHH
Confidence 799999999999999977776666778999999999999999999999999999996432221 0
Q ss_pred --------------------HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCc
Q 001796 802 --------------------QRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAH 861 (1012)
Q Consensus 802 --------------------~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~ 861 (1012)
+......|++|.|+++++++++.+++.|+++|.++..
T Consensus 582 ~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a----------------------- 638 (2102)
T PLN03200 582 VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS----------------------- 638 (2102)
T ss_pred HHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----------------------
Confidence 0111246899999999999999999999999999933
Q ss_pred cccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChh
Q 001796 862 LCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDS 941 (1012)
Q Consensus 862 ~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~ 941 (1012)
.+...| ..++.+|+|+||+.+|.+++.+++.+|++||.+|+.. ..+..+..+.+.|+|++|++++.+.+..
T Consensus 639 ---~~~d~~-----~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~-~~~~q~~~~v~~GaV~pL~~LL~~~d~~ 709 (2102)
T PLN03200 639 ---SRQDLC-----ESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS-IKENRKVSYAAEDAIKPLIKLAKSSSIE 709 (2102)
T ss_pred ---CChHHH-----HHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC-CCHHHHHHHHHcCCHHHHHHHHhCCChH
Confidence 222222 5688899999999999999999999999999999963 1345556678889999999999999999
Q ss_pred hHhHHHHHHHHHhchHhhHhhhcccccc-hhhhhhhhcccCCchHHHHHHHHHHHHHhccC
Q 001796 942 LKEEALGFLEKVFMSKEMVDTYGSSARL-LLVPLTSRNVHEDGSLERKAAKVLSLIERYSR 1001 (1012)
Q Consensus 942 ~~~~a~~aL~~l~~~~~~~~~~~~~~~~-~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~~~ 1001 (1012)
+++.|+.+|.+++.+++.+.+++..+.+ +|+.+++ +|+++.|+.|+++|.+|.+...
T Consensus 710 v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr---~G~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 710 VAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR---EGTLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH---hCChHHHHHHHHHHHHHHhCCC
Confidence 9999999999999998877776644443 5666665 8999999999999999987643
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.3e-47 Score=482.77 Aligned_cols=604 Identities=19% Similarity=0.177 Sum_probs=476.0
Q ss_pred HHHHHHHHHHHhhccccchhHhccCchHHHHHHhccCCCHHHHHHHHHHHHHHhccc--cchhhh-hhhcCCcccccccc
Q 001796 349 LEALDQMQDLMRESSINKDWISIGGITDIIISILGSSHNKDVKMKILITLKQLVKGH--ARNKEK-VIDYGGWDHIVPCL 425 (1012)
Q Consensus 349 ~~~l~~l~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~--~~~~~~-i~~~g~i~~lv~lL 425 (1012)
..++..+..++.. +.++..+...|++|.|+.+|++ ++.+.|..|+..|..++.++ +.++.. ++..|+||.|+.+|
T Consensus 76 ~nAaaaL~nLS~~-e~nk~~Iv~~GaIppLV~LL~s-Gs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL 153 (2102)
T PLN03200 76 VNAAAVLGVLCKE-EDLRVKVLLGGCIPPLLSLLKS-GSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQL 153 (2102)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHH
Confidence 3455566667655 4567777789999999999976 58999999999999999875 455544 55799999999999
Q ss_pred ccCC----hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHh
Q 001796 426 GRDP----SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAA 501 (1012)
Q Consensus 426 ~~~~----~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~ 501 (1012)
.+.+ ..++.|+.+|.+++.+.++. ...+.+.|++|.|+.+|+++++..+..|+.+|.+++..+++.+..+.
T Consensus 154 ~~gsk~d~~L~~~Av~AL~nLs~~~en~-----~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVI 228 (2102)
T PLN03200 154 QPGNKQDKVVEGLLTGALRNLCGSTDGF-----WSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVL 228 (2102)
T ss_pred hCCchhhHHHHHHHHHHHHHHhcCccch-----HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 6532 34677889999999987653 33445679999999999999999999999999999888788999999
Q ss_pred hcCCcHHHHHHHhcC-ChHHHHHHHHHHHhccc-ccchhhHhhhcCChHHHHhhhcCCC---------hhHHHHHHHHHH
Q 001796 502 KSGWYKPLIDRIIQG-AESSRILMMKALLSMEL-VDSNLELLGKEGIIPPLLGLVGSGN---------FQSKELSLSVLV 570 (1012)
Q Consensus 502 ~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~---------~~~~~~a~~~L~ 570 (1012)
+.|+||.|+++|+++ +..+|.+|+++|++|+. +.+++..+++.|+||+|++++.+++ ..+++.|.++|.
T Consensus 229 eaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALs 308 (2102)
T PLN03200 229 DAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALA 308 (2102)
T ss_pred HCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHH
Confidence 999999999999876 45899999999999999 4788999999999999999997544 345899999999
Q ss_pred HhcCCCc------------hH--HH-----------------------HHHc-CChHHHHHHhhcCCCC-----------
Q 001796 571 KLSGCSK------------NR--EL-----------------------ISAA-GGIPQVLELMFSSHVP----------- 601 (1012)
Q Consensus 571 ~Ls~~~~------------~~--~~-----------------------i~~~-g~i~~Lv~lL~~~~~~----------- 601 (1012)
|||.... .+ .. +++. .+.+.|++++++.++.
T Consensus 309 NIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa 388 (2102)
T PLN03200 309 NICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA 388 (2102)
T ss_pred HHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH
Confidence 9997311 10 00 0111 2235566666544222
Q ss_pred -----------------------------hhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChh
Q 001796 602 -----------------------------SNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYN 652 (1012)
Q Consensus 602 -----------------------------~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~ 652 (1012)
...++.+++.|++|+..+... ...+...++++.|+.+|.+++ +.
T Consensus 389 sl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~-----~~aIi~~ggIp~LV~LL~s~s--~~ 461 (2102)
T PLN03200 389 SLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGL-----WEALGGREGVQLLISLLGLSS--EQ 461 (2102)
T ss_pred HhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHH-----HHHHHHcCcHHHHHHHHcCCC--HH
Confidence 123455666666666421110 011223457999999999855 66
Q ss_pred hHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhh
Q 001796 653 VRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFL 732 (1012)
Q Consensus 653 ~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL 732 (1012)
.++.|+++|.+++..++. .+..+++.|++|.|+++|.+++..+++.|+++|.|++.+ +++....+.+.|++++|+++|
T Consensus 462 iQ~~A~~~L~nLa~~nde-nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL 539 (2102)
T PLN03200 462 QQEYAVALLAILTDEVDE-SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLL 539 (2102)
T ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999986654 468899999999999999999999999999999999986 455666666889999999999
Q ss_pred cCCCchHHHHHHHHHHhccCCCCH----------------HH---------------------HHHHHhhccHHHHHHHh
Q 001796 733 ENDAKHDVQMAAAGLLANLPKSEL----------------SL---------------------TMKLIELDGLNAIINIL 775 (1012)
Q Consensus 733 ~~~~~~~~~~~Aa~aL~nL~~~~~----------------~~---------------------~~~l~~~g~i~~Lv~lL 775 (1012)
+++ +.+.+..|+++|.||..+.. .. ++.....|+++.|++++
T Consensus 540 ~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL 618 (2102)
T PLN03200 540 KNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL 618 (2102)
T ss_pred hCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH
Confidence 988 67889999999999963211 00 11112468999999999
Q ss_pred cCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCccccc
Q 001796 776 KSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCF 855 (1012)
Q Consensus 776 ~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~ 855 (1012)
+++++.+++.|+++|.+++.. +++.+..+...|++|+|+.+|++++.++++.|+++|.|++.+.
T Consensus 619 ~sgs~~ikk~Aa~iLsnL~a~-~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~--------------- 682 (2102)
T PLN03200 619 SSSKEETQEKAASVLADIFSS-RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI--------------- 682 (2102)
T ss_pred cCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC---------------
Confidence 999999999999999999986 5777788999999999999999999999999999999995411
Q ss_pred CCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHh
Q 001796 856 RPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEIL 935 (1012)
Q Consensus 856 ~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll 935 (1012)
.+ .++..++++|+|+||+++|.+.+..+++.|+.||.+++.+ ++++..+.+.|+|++|++++
T Consensus 683 ---------~~------~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~---~e~~~ei~~~~~I~~Lv~lL 744 (2102)
T PLN03200 683 ---------KE------NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD---PEVAAEALAEDIILPLTRVL 744 (2102)
T ss_pred ---------CH------HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC---chHHHHHHhcCcHHHHHHHH
Confidence 11 2236678999999999999999999999999999999995 78888888889999999999
Q ss_pred ccCChhhHhHHHHHHHHHhchHhhHh---hh-c-ccccchhhhhhhhcccCCchHHH--HHHHHHHHHHhccCCcccc
Q 001796 936 TWGTDSLKEEALGFLEKVFMSKEMVD---TY-G-SSARLLLVPLTSRNVHEDGSLER--KAAKVLSLIERYSRSSTSL 1006 (1012)
Q Consensus 936 ~s~~~~~~~~a~~aL~~l~~~~~~~~---~~-~-~~~~~~l~~L~~~~~~~~~~~~~--~Aa~~L~~L~~~~~~~~~~ 1006 (1012)
++++++.|++|+|+|.++++....-+ .+ . .+...+|.+++. .-|.+... .|..+|..|.+...+..+.
T Consensus 745 r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~---~~~~~~~~~~~al~~l~~l~~~~~~~~~~ 819 (2102)
T PLN03200 745 REGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN---STDLDSSATSEALEALALLARTKGGANFS 819 (2102)
T ss_pred HhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHh---cCCcchhhHHHHHHHHHHHHhhcccCCCC
Confidence 99999999999999999998733222 11 1 222236777775 45555544 4999999999986666653
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.6e-33 Score=285.50 Aligned_cols=419 Identities=16% Similarity=0.183 Sum_probs=345.9
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhh-cCChhhHHHHhhcCCcHHHHHHHh-cCChHHHHHHHHHHHhcccccch-hh
Q 001796 463 GILFLVTLIKGPVRESAECAEKILQQLF-DVDEENFCRAAKSGWYKPLIDRII-QGAESSRILMMKALLSMELVDSN-LE 539 (1012)
Q Consensus 463 ~i~~Lv~lL~~~~~~~~~~A~~~L~~La-~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~-~~ 539 (1012)
-+|.|..-|.|.|.+.+..|..-.+.+- ..+..-...+.++|++|.+++++. ......+.+|+|+|.|+++...+ ..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTk 151 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTK 151 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceE
Confidence 4688888888989998888877666544 344456778899999999999995 45667889999999999996555 45
Q ss_pred HhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCc-hHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhcc
Q 001796 540 LLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSK-NRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSD 618 (1012)
Q Consensus 540 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~ 618 (1012)
.+++.|++|.+++||.+++.++++.+.|+|.|++.+.+ .|..+.+.|++.+++.++.+...+..+...+.|+|+|||..
T Consensus 152 vVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRG 231 (526)
T COG5064 152 VVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRG 231 (526)
T ss_pred EEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCC
Confidence 56689999999999999999999999999999998655 57888999999999999998877666777888888888751
Q ss_pred CccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHH
Q 001796 619 GIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVRE 698 (1012)
Q Consensus 619 ~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~ 698 (1012)
. ++.| + -..| ..++|.|.+++-+.++++..
T Consensus 232 k----------------------------nP~P-----------------~---w~~i--sqalpiL~KLiys~D~evlv 261 (526)
T COG5064 232 K----------------------------NPPP-----------------D---WSNI--SQALPILAKLIYSRDPEVLV 261 (526)
T ss_pred C----------------------------CCCC-----------------c---hHHH--HHHHHHHHHHHhhcCHHHHH
Confidence 0 0111 0 0111 12358888888889999999
Q ss_pred HHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC
Q 001796 699 IAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG 778 (1012)
Q Consensus 699 ~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 778 (1012)
.|++++.+++.. +.+....+...|..+.|+.+|.++ +..++.-|...++|+..++...++.+++.|+++.+-.+|.+.
T Consensus 262 DA~WAiSYlsDg-~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ 339 (526)
T COG5064 262 DACWAISYLSDG-PNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP 339 (526)
T ss_pred HHHHHHHHhccC-cHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh
Confidence 999999999977 667777788999999999999987 667899999999999999998899999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCC
Q 001796 779 TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPS 858 (1012)
Q Consensus 779 ~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~ 858 (1012)
...++..|+|++.|++.+ +.+..+.+++.+.+|+|+++|.+.+-.+|+.||||+.|.+....
T Consensus 340 ke~irKEaCWTiSNITAG-nteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~----------------- 401 (526)
T COG5064 340 KENIRKEACWTISNITAG-NTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGL----------------- 401 (526)
T ss_pred hhhhhhhhheeecccccC-CHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----------------
Confidence 899999999999999997 45556788999999999999999999999999999999854221
Q ss_pred CCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccc--------h-hhhhHHhhhcCCch
Q 001796 859 RAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGC--------Q-QRGVNVLHQEEAIK 929 (1012)
Q Consensus 859 ~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~--------~-~~~~~~i~~~~~v~ 929 (1012)
--|+....+++.|+|.||.++|...+..+.+.++.++.++..-+- + ......+.++||+.
T Consensus 402 -----------~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd 470 (526)
T COG5064 402 -----------NRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMD 470 (526)
T ss_pred -----------CCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHH
Confidence 113344778999999999999998888888999999999885321 1 12345567799999
Q ss_pred HHHHHhccCChhhHhHHHHHHHHHhchHhhHhh
Q 001796 930 PTLEILTWGTDSLKEEALGFLEKVFMSKEMVDT 962 (1012)
Q Consensus 930 ~L~~ll~s~~~~~~~~a~~aL~~l~~~~~~~~~ 962 (1012)
.+..+..+.+..+..+|-.+++.+|..++..+.
T Consensus 471 ~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~ 503 (526)
T COG5064 471 AIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDE 503 (526)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHcccchhhhh
Confidence 999999999999999999999999976544443
No 4
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=306.30 Aligned_cols=409 Identities=17% Similarity=0.221 Sum_probs=340.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-hhHHHHhhcCCcHHHHHHHhc-CChHHHHHHHHHHHhccc-ccchhhH
Q 001796 464 ILFLVTLIKGPVRESAECAEKILQQLFDVDE-ENFCRAAKSGWYKPLIDRIIQ-GAESSRILMMKALLSMEL-VDSNLEL 540 (1012)
Q Consensus 464 i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~-~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~-~~~~~~~ 540 (1012)
.+.++..+.+++...+..+...++.+.+... .....+...|++|.+|+.|.. .++..+.+|+|+|.|++. ..+.-..
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5677788888888888888888887765332 345555666999999999974 468999999999999999 4566777
Q ss_pred hhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCC-CchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccC
Q 001796 541 LGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGC-SKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDG 619 (1012)
Q Consensus 541 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~ 619 (1012)
++++|++|.|+.++.+++..+++.|.++|.|++.+ +..|..+++.|++++|+.++..... ......+.|+|+|||
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~-~~~lRn~tW~LsNlc--- 223 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDK-LSMLRNATWTLSNLC--- 223 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccc-hHHHHHHHHHHHHHH---
Confidence 88999999999999999999999999999999975 5668999999999999999988754 223355555555555
Q ss_pred ccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCch-HHHHHHHHhcCcHHHHHHhhcCCCHHHHH
Q 001796 620 IKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEA-ELVKIAVVKANGVSLILSLLDDTDSEVRE 698 (1012)
Q Consensus 620 ~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~-~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~ 698 (1012)
.+.. ..--.. -..++|.|..++.+.++++..
T Consensus 224 ----------------------------------------------rgk~P~P~~~~--v~~iLp~L~~ll~~~D~~Vl~ 255 (514)
T KOG0166|consen 224 ----------------------------------------------RGKNPSPPFDV--VAPILPALLRLLHSTDEEVLT 255 (514)
T ss_pred ----------------------------------------------cCCCCCCcHHH--HHHHHHHHHHHHhcCCHHHHH
Confidence 3321 000011 124568899999999999999
Q ss_pred HHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhc-C
Q 001796 699 IAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILK-S 777 (1012)
Q Consensus 699 ~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~-~ 777 (1012)
.|++++++|+.+ +.+....+++.|+++.||.+|.+. ...++..|..+++|++.++...++.+++.|++|.|..++. +
T Consensus 256 Da~WAlsyLsdg-~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s 333 (514)
T KOG0166|consen 256 DACWALSYLTDG-SNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS 333 (514)
T ss_pred HHHHHHHHHhcC-ChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC
Confidence 999999999988 556667789999999999999888 4568889999999999999999999999999999999998 4
Q ss_pred CChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCC
Q 001796 778 GTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRP 857 (1012)
Q Consensus 778 ~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~ 857 (1012)
....+++.|+|++.|++.+ +++....+++.|.+|.|+.+|++++.++|++|+||+.|++.+
T Consensus 334 ~~~~ikkEAcW~iSNItAG-~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~------------------ 394 (514)
T KOG0166|consen 334 PKESIKKEACWTISNITAG-NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS------------------ 394 (514)
T ss_pred cchhHHHHHHHHHHHhhcC-CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc------------------
Confidence 5666999999999999996 677778899999999999999999999999999999998432
Q ss_pred CCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccc---h---hhhhHHhhhcCCchHH
Q 001796 858 SRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGC---Q---QRGVNVLHQEEAIKPT 931 (1012)
Q Consensus 858 ~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~---~---~~~~~~i~~~~~v~~L 931 (1012)
++++....+++.|+|+||+++|.-.+..++..++.+|.++..-+- . ......|.++||+..+
T Consensus 395 ------------g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 395 ------------GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKI 462 (514)
T ss_pred ------------CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHH
Confidence 224455789999999999999988889999999999999985211 1 3345678999999999
Q ss_pred HHHhccCChhhHhHHHHHHHHHhchH
Q 001796 932 LEILTWGTDSLKEEALGFLEKVFMSK 957 (1012)
Q Consensus 932 ~~ll~s~~~~~~~~a~~aL~~l~~~~ 957 (1012)
..|-.+.+.++...|..++.++|..+
T Consensus 463 E~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 463 ENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999864
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=291.79 Aligned_cols=439 Identities=18% Similarity=0.214 Sum_probs=365.9
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHh
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
..++.+..++++.+...+..|..++.|++ .+.+|+..+++.+++++|+.-...+..++|.+++.+++||+..++||..|
T Consensus 85 es~epvl~llqs~d~~Iq~aa~~alGnlA-Vn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~ki 163 (550)
T KOG4224|consen 85 ESNEPVLALLQSCDKCIQCAAGEALGNLA-VNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKI 163 (550)
T ss_pred hhhhHHHHHHhCcchhhhhhhhhhhccce-eccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhh
Confidence 45677788899999999999999999997 57789999999999999999988888899999999999999999999999
Q ss_pred hhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhcc--C
Q 001796 542 GKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSD--G 619 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~--~ 619 (1012)
...|++.++.++-++.+..++.++..+|.||....+||+.++.+|++|.||+++.+++.++ +++|...++|++-+ .
T Consensus 164 A~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dv--qyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 164 ARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDV--QYYCTTAISNIAVDRRA 241 (550)
T ss_pred hhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhH--HHHHHHHhhhhhhhHHH
Confidence 9999999999988888999999999999999999999999999999999999999987774 59999999999973 2
Q ss_pred ccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHH
Q 001796 620 IKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREI 699 (1012)
Q Consensus 620 ~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~ 699 (1012)
++.+...+ ...++.|+.+..+++ ++++..|..+|.|++.... ....++++|++|.++++++++......+
T Consensus 242 Rk~Laqae------p~lv~~Lv~Lmd~~s--~kvkcqA~lALrnlasdt~--Yq~eiv~ag~lP~lv~Llqs~~~plila 311 (550)
T KOG4224|consen 242 RKILAQAE------PKLVPALVDLMDDGS--DKVKCQAGLALRNLASDTE--YQREIVEAGSLPLLVELLQSPMGPLILA 311 (550)
T ss_pred HHHHHhcc------cchHHHHHHHHhCCC--hHHHHHHHHHHhhhcccch--hhhHHHhcCCchHHHHHHhCcchhHHHH
Confidence 33322211 348999999999866 5699999999999988765 5578899999999999999988888888
Q ss_pred HHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCC
Q 001796 700 AINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGT 779 (1012)
Q Consensus 700 a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 779 (1012)
...+++|++-+...+ -.+.+.|++.+||++|+.+++++.|.+|..+|+||+.....++..+.+.|+||.+.+++.++.
T Consensus 312 sVaCIrnisihplNe--~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p 389 (550)
T KOG4224|consen 312 SVACIRNISIHPLNE--VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP 389 (550)
T ss_pred HHHHHhhcccccCcc--cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC
Confidence 889999999873332 246789999999999999999999999999999999988888999999999999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCC
Q 001796 780 MEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSR 859 (1012)
Q Consensus 780 ~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~ 859 (1012)
..+++...+++..|+..+ ..+..+.+.|.+|.|+.++.+.+.+++-.|+.||.||+.+....+++.+
T Consensus 390 vsvqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviE----------- 456 (550)
T KOG4224|consen 390 VSVQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIE----------- 456 (550)
T ss_pred hhHHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHH-----------
Confidence 999999999999998863 3357889999999999999999999999999999999776554432211
Q ss_pred CccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCC
Q 001796 860 AHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGT 939 (1012)
Q Consensus 860 ~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~ 939 (1012)
|-.|.. .|.-..|++.+.+....+..-+.+++.+|+.+ +..++..++++++
T Consensus 457 ---awd~P~------------~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~--------------h~~~~~~~i~~~d 507 (550)
T KOG4224|consen 457 ---AWDHPV------------QGIQGRLARFLASHELTFRHIARWTIQQLLED--------------HDLPLTAFIQSSD 507 (550)
T ss_pred ---HhcCcc------------hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh--------------CCccHHHHHhCch
Confidence 111111 34445688889876666666699999888875 4455666666555
Q ss_pred hhhHhHHHHHHHHHhchHh
Q 001796 940 DSLKEEALGFLEKVFMSKE 958 (1012)
Q Consensus 940 ~~~~~~a~~aL~~l~~~~~ 958 (1012)
.-+ +-+-.+..+..+..+
T Consensus 508 dii-~~~~~~~~r~~~~g~ 525 (550)
T KOG4224|consen 508 DII-ELLNDIVARDANNGE 525 (550)
T ss_pred hHH-HHHHHHHHHhccCCc
Confidence 443 455555555555544
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-32 Score=278.66 Aligned_cols=462 Identities=16% Similarity=0.177 Sum_probs=364.1
Q ss_pred HHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHH
Q 001796 433 LAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDR 512 (1012)
Q Consensus 433 ~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~l 512 (1012)
.+|+..+++...+... .-....+-+..+..+-.+++...+..|+-+...+.. .. ..-+....++++.-+
T Consensus 25 rEav~~ll~~lEd~~~-------i~fyS~~plraltvL~ySDnlnlqrsaalafAeite---k~-vr~Vsres~epvl~l 93 (550)
T KOG4224|consen 25 REAVADLLNRLEDRNA-------ISFYSASPLRALTVLKYSDNLNLQRSAALAFAEITE---KG-VRRVSRESNEPVLAL 93 (550)
T ss_pred HHHHHHHHHhhccccc-------ccccCCCccchheeeeeccccccchHHHHHHHHHHH---HH-HHHhhhhhhhHHHHH
Confidence 4566666666543210 011222334444444445555555555443333321 11 122355678899999
Q ss_pred HhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHH
Q 001796 513 IIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVL 592 (1012)
Q Consensus 513 L~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv 592 (1012)
+++.+..++..+..+++|++.+.+||..|++.+++.+|+.-+..+.-+++.++..++.||++.++||..+...|++.++.
T Consensus 94 lqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~plt 173 (550)
T KOG4224|consen 94 LQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLT 173 (550)
T ss_pred HhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhH
Confidence 99999999999999999999999999999999999988877767778899999999999999999999999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHH
Q 001796 593 ELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELV 672 (1012)
Q Consensus 593 ~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~ 672 (1012)
++-++.+.. +|.++..+|.||+...+ .
T Consensus 174 rLakskdir---------------------------------------------------vqrnatgaLlnmThs~E--n 200 (550)
T KOG4224|consen 174 RLAKSKDIR---------------------------------------------------VQRNATGALLNMTHSRE--N 200 (550)
T ss_pred hhcccchhh---------------------------------------------------HHHHHHHHHHHhhhhhh--h
Confidence 965554322 67888888999887766 4
Q ss_pred HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCC--ChHHHHHhhcCCCchHHHHHHHHHHhc
Q 001796 673 KIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPK--RLEALVGFLENDAKHDVQMAAAGLLAN 750 (1012)
Q Consensus 673 ~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~--~i~~Lv~lL~~~~~~~~~~~Aa~aL~n 750 (1012)
|+.++.+|++|.|+.++.+.++.+|..|+.++.+++-+ ...+.++.+++ .++.||++.+++ ++.++..|.-+|+|
T Consensus 201 Rr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd--~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrn 277 (550)
T KOG4224|consen 201 RRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD--RRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRN 277 (550)
T ss_pred hhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh--HHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999876 34444566655 999999999998 56899999999999
Q ss_pred cCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHH
Q 001796 751 LPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGS-ITAKARA 829 (1012)
Q Consensus 751 L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~-~~vk~~A 829 (1012)
|+. +.++...++++|++|.++++++++.-......+..+.|++.+ |-+...+.++|++.+||.+|+-++ .++|..|
T Consensus 278 las-dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih--plNe~lI~dagfl~pLVrlL~~~dnEeiqchA 354 (550)
T KOG4224|consen 278 LAS-DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH--PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHA 354 (550)
T ss_pred hcc-cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc--cCcccceecccchhHHHHHHhcCCchhhhhhH
Confidence 998 566789999999999999999988777777888899999986 444577889999999999999874 5699999
Q ss_pred HHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHH
Q 001796 830 AALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTL 909 (1012)
Q Consensus 830 a~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L 909 (1012)
...|+||+.++. .+...+.++|+|+.|..++.++...++.+...+++.|
T Consensus 355 vstLrnLAasse-------------------------------~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~L 403 (550)
T KOG4224|consen 355 VSTLRNLAASSE-------------------------------HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQL 403 (550)
T ss_pred HHHHHHHhhhhh-------------------------------hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 999999966433 2336788999999999999999999999999999999
Q ss_pred hhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhchHh----hHhhhcccc-cc--hhhhhhhhcccCC
Q 001796 910 VQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKE----MVDTYGSSA-RL--LLVPLTSRNVHED 982 (1012)
Q Consensus 910 ~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~----~~~~~~~~~-~~--~l~~L~~~~~~~~ 982 (1012)
+-. ++.+..+.+.|-++.|+.++.+.+.+++-+|+.+|.|++...+ +.+..+... ++ -|+.++. +.+
T Consensus 404 al~---d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~---S~~ 477 (550)
T KOG4224|consen 404 ALN---DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLA---SHE 477 (550)
T ss_pred Hhc---cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHh---hhH
Confidence 973 7788899999999999999999999999999999999998733 223333211 11 2344433 555
Q ss_pred chHHHHHHHHHHHHHhccC
Q 001796 983 GSLERKAAKVLSLIERYSR 1001 (1012)
Q Consensus 983 ~~~~~~Aa~~L~~L~~~~~ 1001 (1012)
...+..|++.+.+|...|+
T Consensus 478 ~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 478 LTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 6778888888888877654
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.8e-29 Score=275.60 Aligned_cols=407 Identities=17% Similarity=0.158 Sum_probs=332.0
Q ss_pred ccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHhhcC
Q 001796 426 GRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKG-PVRESAECAEKILQQLFDVDEENFCRAAKSG 504 (1012)
Q Consensus 426 ~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g 504 (1012)
+.+...+..++..++.+.....++ .+... + ..|+||.+|..|.. .++..+..|+++|.|+|+.+.+.-..++++|
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~p--pi~~v-i-~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~ag 152 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNP--PIDEV-I-QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAG 152 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCC--CHHHH-H-HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCC
Confidence 445556777777777776554432 22222 2 34999999999974 4588999999999999999999999999999
Q ss_pred CcHHHHHHHhcCChHHHHHHHHHHHhcccc-cchhhHhhhcCChHHHHhhhcCCCh-hHHHHHHHHHHHhcCCCchHHHH
Q 001796 505 WYKPLIDRIIQGAESSRILMMKALLSMELV-DSNLELLGKEGIIPPLLGLVGSGNF-QSKELSLSVLVKLSGCSKNRELI 582 (1012)
Q Consensus 505 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i 582 (1012)
++|.++.+|.+++..++..|+|+|+|++.+ +..|..+.+.|++++|+.++...+. .....+.|+|.|||....-...+
T Consensus 153 avp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~ 232 (514)
T KOG0166|consen 153 AVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPF 232 (514)
T ss_pred chHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcH
Confidence 999999999999999999999999999995 5668888899999999999987765 68899999999999865322111
Q ss_pred -HHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHH
Q 001796 583 -SAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRAL 661 (1012)
Q Consensus 583 -~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL 661 (1012)
.-..++|.|..++.+.+ +++...|++++
T Consensus 233 ~~v~~iLp~L~~ll~~~D---------------------------------------------------~~Vl~Da~WAl 261 (514)
T KOG0166|consen 233 DVVAPILPALLRLLHSTD---------------------------------------------------EEVLTDACWAL 261 (514)
T ss_pred HHHHHHHHHHHHHHhcCC---------------------------------------------------HHHHHHHHHHH
Confidence 22345566666665543 34667778888
Q ss_pred HHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHH
Q 001796 662 FRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQ 741 (1012)
Q Consensus 662 ~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~ 741 (1012)
..|+.++.+ ..+.+++.|+++.|+++|.+++..++..|+++++|+..+ .+.....++..|+++.|..++..+....++
T Consensus 262 syLsdg~ne-~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG-~d~QTq~vi~~~~L~~l~~ll~~s~~~~ik 339 (514)
T KOG0166|consen 262 SYLTDGSNE-KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG-SDEQTQVVINSGALPVLSNLLSSSPKESIK 339 (514)
T ss_pred HHHhcCChH-HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec-cHHHHHHHHhcChHHHHHHHhccCcchhHH
Confidence 887766544 468889999999999999999999999999999998877 567777889999999999999866566788
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC
Q 001796 742 MAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG 821 (1012)
Q Consensus 742 ~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 821 (1012)
..|+|+++|++.++.+..++++++|.+|.|+.+|+++.-++|..|+|++.|++.+.+++.-..+++.|.|++|.++|.-.
T Consensus 340 kEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~ 419 (514)
T KOG0166|consen 340 KEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCP 419 (514)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999998899889999999999999999888
Q ss_pred CHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHH
Q 001796 822 SITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYE 901 (1012)
Q Consensus 822 ~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~ 901 (1012)
+.++...+..+|.|+-....... .+++ ......+-++|++..+=.+-.+++.++-..
T Consensus 420 D~~ii~v~Ld~l~nil~~~e~~~--------------------~~~~---n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~ 476 (514)
T KOG0166|consen 420 DVKIILVALDGLENILKVGEAEK--------------------NRGT---NPLAIMIEEAGGLDKIENLQSHENEEIYKK 476 (514)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhc--------------------cccc---cHHHHHHHHccChhHHHHhhccccHHHHHH
Confidence 88888888999999833221110 0000 011155678999999888888899999999
Q ss_pred HHHHHHHHhhc
Q 001796 902 AIQTLSTLVQE 912 (1012)
Q Consensus 902 Al~aL~~L~~~ 912 (1012)
|...+.+.-.+
T Consensus 477 A~~II~~yf~~ 487 (514)
T KOG0166|consen 477 AYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHhcCC
Confidence 99999888764
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=8.6e-28 Score=246.20 Aligned_cols=413 Identities=15% Similarity=0.182 Sum_probs=327.7
Q ss_pred cHHHHHHHhcCChHHHHHHHHHHHhccc--ccchhhHhhhcCChHHHHhhhcC-CChhHHHHHHHHHHHhcCCCchH-HH
Q 001796 506 YKPLIDRIIQGAESSRILMMKALLSMEL--VDSNLELLGKEGIIPPLLGLVGS-GNFQSKELSLSVLVKLSGCSKNR-EL 581 (1012)
Q Consensus 506 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~-~~ 581 (1012)
+|.|..-|.+++.+.+..|+.-...+.+ +..-...++++|++|.+++++.+ ...-.+-.|+|+|.|+++....+ +.
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 5788888888888888888887777655 44557788999999999999954 44557789999999999877776 44
Q ss_pred HHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHH
Q 001796 582 ISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRAL 661 (1012)
Q Consensus 582 i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL 661 (1012)
++++|++|.++++|.++..+ +++.++++|
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~---------------------------------------------------V~eQavWAL 181 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDD---------------------------------------------------VREQAVWAL 181 (526)
T ss_pred EEeCCchHHHHHHHcCchHH---------------------------------------------------HHHHHHHHh
Confidence 57999999999999887543 566677777
Q ss_pred HHhccCchHHHHHHHHhcCcHHHHHHhhcCCC--HHHHHHHHHHHHHhccCC-CcchHHhhhcCCChHHHHHhhcCCCch
Q 001796 662 FRICKSEAELVKIAVVKANGVSLILSLLDDTD--SEVREIAINLLFLFSHHE-PEGVVEYLLKPKRLEALVGFLENDAKH 738 (1012)
Q Consensus 662 ~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~--~~v~~~a~~~L~~ls~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 738 (1012)
.|++..++. +|..+.+.|++++++.++.+.. -.+..++.++|.|+.... |......+ ..++|.|.+++.+. ++
T Consensus 182 GNiAGDS~~-~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~-D~ 257 (526)
T COG5064 182 GNIAGDSEG-CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR-DP 257 (526)
T ss_pred ccccCCchh-HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc-CH
Confidence 777665554 7899999999999999988764 489999999999998642 21111111 45789999998777 77
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHH
Q 001796 739 DVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLL 818 (1012)
Q Consensus 739 ~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL 818 (1012)
++...|+|++++|+.+..+..+++++.|.-+.|+++|.+++..++-.|++.+.|+..+++.+ ...++..|+++.+..+|
T Consensus 258 evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~Q-TqviI~~G~L~a~~~lL 336 (526)
T COG5064 258 EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQ-TQVIINCGALKAFRSLL 336 (526)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccc-eehheecccHHHHHHHh
Confidence 89999999999999999898999999999999999999999999999999999998875554 46788999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHH
Q 001796 819 QIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHAT 898 (1012)
Q Consensus 819 ~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v 898 (1012)
.+....+|+.|||.+.|++... .+....+++++.+|||+.+|...+-.+
T Consensus 337 s~~ke~irKEaCWTiSNITAGn-------------------------------teqiqavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 337 SSPKENIRKEACWTISNITAGN-------------------------------TEQIQAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred cChhhhhhhhhheeecccccCC-------------------------------HHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 9998899999999999994321 123367889999999999999988999
Q ss_pred HHHHHHHHHHHhhccc-hhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhchHhhH-hhhc-----------c
Q 001796 899 AYEAIQTLSTLVQEGC-QQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMV-DTYG-----------S 965 (1012)
Q Consensus 899 ~~~Al~aL~~L~~~~~-~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~~~-~~~~-----------~ 965 (1012)
+.+|++|+.|..+.+. .+...+.+++.|.|.+|.++|.-.+..+-+-+..+++++.+..+.. ..++ .
T Consensus 386 kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~ 465 (526)
T COG5064 386 KKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEK 465 (526)
T ss_pred HHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHh
Confidence 9999999999997644 4666788899999999999999777778888899999998874422 1222 1
Q ss_pred cccchhhhhhhhcccCCchHHHHHHHHHHHHHhccCCccccc
Q 001796 966 SARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTSLI 1007 (1012)
Q Consensus 966 ~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~~~~~~~~~ 1007 (1012)
.++|-.+.=+|. +++..+..||-.++...-..-++...++
T Consensus 466 Aggmd~I~~~Q~--s~n~~iy~KAYsIIe~fFgeeD~vd~la 505 (526)
T COG5064 466 AGGMDAIHGLQD--SVNRTIYDKAYSIIEKFFGEEDAVDELA 505 (526)
T ss_pred cccHHHHHHhhh--ccccHHHHHHHHHHHHHcccchhhhhcC
Confidence 333434444443 6788999999888775543334433343
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=5.6e-24 Score=250.93 Aligned_cols=383 Identities=20% Similarity=0.266 Sum_probs=319.2
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhh
Q 001796 475 VRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLV 554 (1012)
Q Consensus 475 ~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL 554 (1012)
.......|..+|.|++ .++.+...|.+.|+++.|+++|.+++.+....++++|.+||...+|+..+.+.|+||.|++++
T Consensus 262 QeqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 3455667888999997 577899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchh
Q 001796 555 GSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELE 634 (1012)
Q Consensus 555 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~ 634 (1012)
.+++.+++..++++|+|||.+++.|..|++.|++|.|+.+|.+.+
T Consensus 341 ~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~----------------------------------- 385 (708)
T PF05804_consen 341 PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN----------------------------------- 385 (708)
T ss_pred cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc-----------------------------------
Confidence 999999999999999999999999999999999999999997643
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCc
Q 001796 635 PIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD-TDSEVREIAINLLFLFSHHEPE 713 (1012)
Q Consensus 635 ~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~a~~~L~~ls~~~~~ 713 (1012)
.+..++.+|+++|...+ .+..+...++++.+++++.. +++.+...++.++.|++.+ .
T Consensus 386 ------------------~~~val~iLy~LS~dd~--~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~--~ 443 (708)
T PF05804_consen 386 ------------------FREVALKILYNLSMDDE--ARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN--K 443 (708)
T ss_pred ------------------hHHHHHHHHHHhccCHh--hHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC--H
Confidence 23446666777766554 45777778899999997655 5667777888999999987 4
Q ss_pred chHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHHh
Q 001796 714 GVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-TMEAKENALSALFR 792 (1012)
Q Consensus 714 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ 792 (1012)
...+.+.+.++++.|++..-...++ ..+..++|++.+++..+..+. +.+..|+.++..+ +++..-.++++|.|
T Consensus 444 rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 444 RNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 4556677889999999866443232 345689999998865555444 4788888888775 67789999999999
Q ss_pred ccCCCCHHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCcc
Q 001796 793 FTDPTNLEAQRNVVERGVYPLLVNLLQIG--SITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGIC 870 (1012)
Q Consensus 793 Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~ 870 (1012)
|+.+ +.++...+.+.+++|.|.++|..+ .+++...++..++.++.+.. |
T Consensus 518 L~~~-~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~---------------------~------- 568 (708)
T PF05804_consen 518 LTIP-DLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPE---------------------C------- 568 (708)
T ss_pred cccC-CcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHH---------------------H-------
Confidence 9986 567778888899999999999876 46788899999998854322 2
Q ss_pred CCCcchhhhhcCcchHHHHhccC--CChHHHHHHHHHHHHHhhccchhhhhHHh-hhcCCchHHHHHhccCChhhHhHHH
Q 001796 871 SESTSFCLLKANALPHLVKLLQG--RVHATAYEAIQTLSTLVQEGCQQRGVNVL-HQEEAIKPTLEILTWGTDSLKEEAL 947 (1012)
Q Consensus 871 s~~~~~~lv~~gai~~Lv~lL~~--~~~~v~~~Al~aL~~L~~~~~~~~~~~~i-~~~~~v~~L~~ll~s~~~~~~~~a~ 947 (1012)
...+.+.|.++.|+++|.. ++++++.+.+.+++.+.. +++.++.| .+.+++..+++++++.|+++|.-|-
T Consensus 569 ----A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~---h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d 641 (708)
T PF05804_consen 569 ----APLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLF---HEETREVLLKETEIPAYLIDLMHDKNAEIRKVCD 641 (708)
T ss_pred ----HHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHc---ChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHH
Confidence 2456679999999999975 678999999999999998 47888876 5567788999999999999999999
Q ss_pred HHHHHHhchH
Q 001796 948 GFLEKVFMSK 957 (1012)
Q Consensus 948 ~aL~~l~~~~ 957 (1012)
.+|--+..++
T Consensus 642 ~~Ldii~e~d 651 (708)
T PF05804_consen 642 NALDIIAEYD 651 (708)
T ss_pred HHHHHHHHhC
Confidence 9998888763
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=1.6e-23 Score=247.00 Aligned_cols=383 Identities=18% Similarity=0.209 Sum_probs=315.3
Q ss_pred CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcH
Q 001796 428 DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYK 507 (1012)
Q Consensus 428 ~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~ 507 (1012)
.......+..+|+|++.+... +..+.+.|+|+.|+.+|.+++.+....++.+|.+|+ ...+||..|.+.|+++
T Consensus 262 QeqLlrv~~~lLlNLAed~~v------e~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~ 334 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPRV------ELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVE 334 (708)
T ss_pred HHHHHHHHHHHHHHHhcChHH------HHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHH
Confidence 334456788899999986532 445678899999999999999999999999999997 6678999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCC
Q 001796 508 PLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGG 587 (1012)
Q Consensus 508 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~ 587 (1012)
+|++++.+++.+.+..++++|+|||.++++|..+++.|+||.|+.+|.++ ..+..++.+|++||..+++|..+...++
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999754 4667899999999999999999999999
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccC
Q 001796 588 IPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKS 667 (1012)
Q Consensus 588 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~ 667 (1012)
+|.+++++.+++.. ++...++..+.|++.+
T Consensus 413 Ip~L~~~Ll~~~~~--------------------------------------------------~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 413 IPQLMQMLLENSEE--------------------------------------------------EVQLELIALLINLALN 442 (708)
T ss_pred HHHHHHHHHhCCCc--------------------------------------------------cccHHHHHHHHHHhcC
Confidence 99999988776433 1334566677778777
Q ss_pred chHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHH
Q 001796 668 EAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGL 747 (1012)
Q Consensus 668 ~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~a 747 (1012)
+.+. +.|.+.||++.|+......... -.+++++|+|.+.+.... .+ .+.+..|++++..+++.+....+.|+
T Consensus 443 ~rna--qlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~-~f--~~~i~~L~~~v~~~~~ee~~vE~LGi 514 (708)
T PF05804_consen 443 KRNA--QLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKE-LF--VDFIGDLAKIVSSGDSEEFVVECLGI 514 (708)
T ss_pred HHHH--HHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHH-HH--HHHHHHHHHHhhcCCcHHHHHHHHHH
Confidence 7653 7788889999999875543322 234899999999654332 23 36899999999888888999999999
Q ss_pred HhccCCCCHHHHHHHHhhccHHHHHHHhcCC--ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC--CH
Q 001796 748 LANLPKSELSLTMKLIELDGLNAIINILKSG--TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG--SI 823 (1012)
Q Consensus 748 L~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~ 823 (1012)
|+||...+.++...+.+.+.+|.|.++|..+ .+++.-.++..+..++. +++....+.+.|.++.|+.+|++. +.
T Consensus 515 LaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDd 592 (708)
T PF05804_consen 515 LANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDD 592 (708)
T ss_pred HHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchH
Confidence 9999988777777777899999999999877 34677888888888876 477778888999999999999975 56
Q ss_pred HHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhh-hcCcchHHHHhccCCChHHHHHH
Q 001796 824 TAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLL-KANALPHLVKLLQGRVHATAYEA 902 (1012)
Q Consensus 824 ~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv-~~gai~~Lv~lL~~~~~~v~~~A 902 (1012)
+.......++.+|-.+. +++..++ +.+++..|++++++.|..++..|
T Consensus 593 E~VlQil~~f~~ll~h~--------------------------------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~ 640 (708)
T PF05804_consen 593 EIVLQILYVFYQLLFHE--------------------------------ETREVLLKETEIPAYLIDLMHDKNAEIRKVC 640 (708)
T ss_pred HHHHHHHHHHHHHHcCh--------------------------------HHHHHHHhccchHHHHHHHhcCCCHHHHHHH
Confidence 67788888888873321 1234444 47889999999999999999988
Q ss_pred HHHHHHHhh
Q 001796 903 IQTLSTLVQ 911 (1012)
Q Consensus 903 l~aL~~L~~ 911 (1012)
-.+|.-++.
T Consensus 641 d~~Ldii~e 649 (708)
T PF05804_consen 641 DNALDIIAE 649 (708)
T ss_pred HHHHHHHHH
Confidence 888888775
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.85 E-value=7.8e-20 Score=210.16 Aligned_cols=429 Identities=17% Similarity=0.108 Sum_probs=305.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc---ccchhh
Q 001796 463 GILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL---VDSNLE 539 (1012)
Q Consensus 463 ~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~---~~~~~~ 539 (1012)
-+|..+.||.+.++..+.+|+..|..+|..+.+.|..+...|+|+.||.+|.+.+.+++.+|+++|.||.. +++|+.
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 46788899999999999999999999999999999999999999999999999999999999999999988 446899
Q ss_pred HhhhcCChHHHHhhhcC-CChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhcc
Q 001796 540 LLGKEGIIPPLLGLVGS-GNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSD 618 (1012)
Q Consensus 540 ~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~ 618 (1012)
.|.+.++||.++++|+. .|.++++....+|+||++++..+..|+... ++.|....-...+.-. +
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~--------------~ 378 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSA-LSTLTDNVIIPHSGWE--------------E 378 (717)
T ss_pred hhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHH-HHHHHHhhcccccccC--------------C
Confidence 99999999999999975 789999999999999999977776666543 5555544433221000 0
Q ss_pred CccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhc-CcHHHHHHhhcC------
Q 001796 619 GIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKA-NGVSLILSLLDD------ 691 (1012)
Q Consensus 619 ~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~-g~v~~Lv~ll~~------ 691 (1012)
+... ... .+.++-.++..+|.|+++.... .++++++. |.|+.|+.++++
T Consensus 379 ~~~~-~~~----------------------~~~~vf~n~tgcLRNlSs~~~e-aR~~mr~c~GLIdaL~~~iq~~i~~~~ 434 (717)
T KOG1048|consen 379 EPAP-RKA----------------------EDSTVFRNVTGCLRNLSSAGQE-AREQMRECDGLIDALLFSIQTAIQKSD 434 (717)
T ss_pred CCcc-ccc----------------------ccceeeehhhhhhccccchhHH-HHHHHhhccchHHHHHHHHHHHHHhcc
Confidence 0000 000 1134678889999999875544 57888876 669999888763
Q ss_pred CCHHHHHHHHHHHHHhccCCCcchHH----hhhc------CCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHH
Q 001796 692 TDSEVREIAINLLFLFSHHEPEGVVE----YLLK------PKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMK 761 (1012)
Q Consensus 692 ~~~~v~~~a~~~L~~ls~~~~~~~~~----~l~~------~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~ 761 (1012)
.+.+..++|+.+++|++..-..+... .... .+....-+.++........+..-...+-.... .+..-.+
T Consensus 435 ~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~-~pkG~e~ 513 (717)
T KOG1048|consen 435 LDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERAT-APKGSEW 513 (717)
T ss_pred ccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCccccc-CCCCcee
Confidence 46789999999999999763322111 0000 00000011111000000000000000000000 1111233
Q ss_pred HHhhccHHHHHHHhc-CCChhHHHHHHHHHHhccCCCC---HHHHHHH-HHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 762 LIELDGLNAIINILK-SGTMEAKENALSALFRFTDPTN---LEAQRNV-VERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 762 l~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~---~~~~~~i-~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
++..-+|..-..+|. +.++.+.|+++++|.|++.... ...+..+ .+..+.|.++++|+.+++++...++.+|+||
T Consensus 514 Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNl 593 (717)
T KOG1048|consen 514 LWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNL 593 (717)
T ss_pred eecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhh
Confidence 455556777566665 4478899999999999998721 2233334 7788999999999999999999999999999
Q ss_pred ccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCC------hHHHHHHHHHHHHHh
Q 001796 837 STSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRV------HATAYEAIQTLSTLV 910 (1012)
Q Consensus 837 s~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~------~~v~~~Al~aL~~L~ 910 (1012)
+.+.. + ..++..++++.||+.|.+.. ++++..++.+|.++.
T Consensus 594 s~d~r--------------------------n-------k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 594 SRDIR--------------------------N-------KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred ccCch--------------------------h-------hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 65322 1 33455899999999998633 578888999999999
Q ss_pred hccchhhhhHHhhhcCCchHHHHHhcc-CChhhHhHHHHHHHHHhchHhhHhhhccc
Q 001796 911 QEGCQQRGVNVLHQEEAIKPTLEILTW-GTDSLKEEALGFLEKVFMSKEMVDTYGSS 966 (1012)
Q Consensus 911 ~~~~~~~~~~~i~~~~~v~~L~~ll~s-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 966 (1012)
.. ...+.+.+.+.+|++.|+.+..+ .++..-+.|..+|..|..+.|++..|...
T Consensus 641 ~~--~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh~~~kk~ 695 (717)
T KOG1048|consen 641 RK--NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELHFKLKKK 695 (717)
T ss_pred HH--hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 65 67888999999999999998875 46677778888888888888887766543
No 12
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.85 E-value=7.8e-22 Score=166.75 Aligned_cols=72 Identities=44% Similarity=0.685 Sum_probs=63.7
Q ss_pred CCCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHHcc
Q 001796 258 PLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNY 329 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 329 (1012)
+|++|+||||+++|+|||++++||||||.+|++|+..++.+||.|++++....++||+.||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999988999999999999999999999999999999875
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.81 E-value=2.7e-18 Score=197.63 Aligned_cols=382 Identities=22% Similarity=0.186 Sum_probs=291.2
Q ss_pred Ccccccccc-ccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChh
Q 001796 417 GWDHIVPCL-GRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEE 495 (1012)
Q Consensus 417 ~i~~lv~lL-~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~ 495 (1012)
.+|..+.+| +.++.+|-+|...|..++..++.. +.-+.+-|+|+.||.+|.+...+++..|+++|+||...+..
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~i-----k~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKI-----KSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHH-----HHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCC
Confidence 456677888 557899999999999999977543 33445669999999999999999999999999999976655
Q ss_pred --hHHHHhhcCCcHHHHHHHhc-CChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcC----------C----C
Q 001796 496 --NFCRAAKSGWYKPLIDRIIQ-GAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGS----------G----N 558 (1012)
Q Consensus 496 --~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----------~----~ 558 (1012)
|+..+.+.++|+.++++|+. ++.++++..+.+|+||+.++..|..|+.. +++.|.+-+-. . +
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccccc
Confidence 99999999999999999986 79999999999999999998878777643 45555543311 1 2
Q ss_pred hhHHHHHHHHHHHhcC-CCchHHHHHH-cCChHHHHHHhhc----CCCChhHHHHHHHHHHHhhc--c-C----------
Q 001796 559 FQSKELSLSVLVKLSG-CSKNRELISA-AGGIPQVLELMFS----SHVPSNIIVKCSEILEKLSS--D-G---------- 619 (1012)
Q Consensus 559 ~~~~~~a~~~L~~Ls~-~~~~~~~i~~-~g~i~~Lv~lL~~----~~~~~~~~~~a~~~L~nLa~--~-~---------- 619 (1012)
.++..++..+|+|++. ..+.|+++.+ .|.|..|+..++. ...+....|+|+++|.||+. + .
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 4577899999999997 6788999987 5889999988773 34445566999999999986 2 0
Q ss_pred -cc------c-------e----------------ec----ccCCc-cchhHHHHHHHHHHhccCCChhhHHHHHHHHHHh
Q 001796 620 -IK------F-------L----------------VD----EKGNR-LELEPIVTNLLTLQQNFNSSYNVRKPALRALFRI 664 (1012)
Q Consensus 620 -~~------~-------~----------------~~----~~g~~-l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L 664 (1012)
.. . + -+ ..|.. +....+|..-+.++.. ...+.+.+.++.+|-|+
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~-s~n~~TlEasaGaLQNl 546 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL-SKNDNTLEASAGALQNL 546 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH-hcchHHHHHhhhhHhhh
Confidence 00 0 0 00 00100 1123344443555553 22355889999999999
Q ss_pred ccCch---HHHHHHH-HhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCc---
Q 001796 665 CKSEA---ELVKIAV-VKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAK--- 737 (1012)
Q Consensus 665 ~~~~~---~~~~~~i-~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~--- 737 (1012)
+.... ..++..+ .+..+.+.|+++++.+++.+...++.+|+|++.+ .. . ..++..++++.||+.|..+.+
T Consensus 547 tA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d-~r-n-k~ligk~a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 547 TAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD-IR-N-KELIGKYAIPDLVRCLPGSGPSTS 623 (717)
T ss_pred hccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC-ch-h-hhhhhcchHHHHHHhCcCCCCCcC
Confidence 87432 2255555 8889999999999999999999999999999987 22 2 234568999999999976544
Q ss_pred --hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCC
Q 001796 738 --HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-TMEAKENALSALFRFTDPTNLEAQRNVVERGV 810 (1012)
Q Consensus 738 --~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~ 810 (1012)
++....++.+|.|+...+..+.+.+.+.++++.|+.+.++. ++..-+.|...|..|=.. .+++......|+
T Consensus 624 ~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y--~eLh~~~kk~g~ 697 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQY--KELHFKLKKKGF 697 (717)
T ss_pred chHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHH--HHHhhhHhhhhh
Confidence 77888899999999988999999999999999999998765 667777787777776442 455555555444
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.81 E-value=1.2e-18 Score=205.93 Aligned_cols=353 Identities=16% Similarity=0.190 Sum_probs=280.3
Q ss_pred hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCH---HHHHHHHHHHHHhhcCChhhHHHHhhcCCc
Q 001796 430 SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVR---ESAECAEKILQQLFDVDEENFCRAAKSGWY 506 (1012)
Q Consensus 430 ~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~A~~~L~~La~~~~~~~~~i~~~g~i 506 (1012)
..+++-.+.+++++.+..+ ..+++..|+++.|+.+|..++. +.+..|-.+|+|+...+++.+..-.+..++
T Consensus 209 ~D~ee~ar~fLemSss~es------CaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL 282 (2195)
T KOG2122|consen 209 DDEEEMARTFLEMSSSPES------CAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVL 282 (2195)
T ss_pred CCHHHHHHHHHHhccCchh------hHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHH
Confidence 3455666777888776533 4567888999999999996544 688999999999988777666555555555
Q ss_pred HHHHHH----------HhcC-------ChHHHH-HHHHHHHhcccccchhhHhhhcCChHHHHhhhcC-----C----C-
Q 001796 507 KPLIDR----------IIQG-------AESSRI-LMMKALLSMELVDSNLELLGKEGIIPPLLGLVGS-----G----N- 558 (1012)
Q Consensus 507 ~~Lv~l----------L~~~-------~~~~~~-~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~----~- 558 (1012)
+.|=++ +..+ ..+-++ .|+.+|..++.++++|..+-+.|++.++-+||.- + +
T Consensus 283 ~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~ 362 (2195)
T KOG2122|consen 283 HLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDG 362 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcH
Confidence 544422 2221 234566 6778899999999999999999999999887732 1 1
Q ss_pred --hhHHHHHHHHHHHhcCCC-chHHHHH-HcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchh
Q 001796 559 --FQSKELSLSVLVKLSGCS-KNRELIS-AAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELE 634 (1012)
Q Consensus 559 --~~~~~~a~~~L~~Ls~~~-~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~ 634 (1012)
-.++..+..+|.||...+ .|+..+. .-|.+..+|..|.+.+++
T Consensus 363 ~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pee--------------------------------- 409 (2195)
T KOG2122|consen 363 ECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEE--------------------------------- 409 (2195)
T ss_pred HHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHH---------------------------------
Confidence 358999999999999755 4566665 468899999998876433
Q ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHhccCCCc
Q 001796 635 PIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSL-LDDTDSEVREIAINLLFLFSHHEPE 713 (1012)
Q Consensus 635 ~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~v~~~a~~~L~~ls~~~~~ 713 (1012)
+.+-...+|.||++..+...++.+.+.|-|..|+.. +...++......+.+|+||+.|..+
T Consensus 410 ------------------L~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 410 ------------------LLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred ------------------HHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 445556677777776555467888888999988876 5556677888899999999999999
Q ss_pred chHHhhhcCCChHHHHHhhcCCC---chHHHHHHHHHHhccCCC---CHHHHHHHHhhccHHHHHHHhcCCChhHHHHHH
Q 001796 714 GVVEYLLKPKRLEALVGFLENDA---KHDVQMAAAGLLANLPKS---ELSLTMKLIELDGLNAIINILKSGTMEAKENAL 787 (1012)
Q Consensus 714 ~~~~~l~~~~~i~~Lv~lL~~~~---~~~~~~~Aa~aL~nL~~~---~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~ 787 (1012)
+..++..-.|++..||.+|.... ...+.+.|-|+|.|.+.. ...+++.+.+.+++..|+..|++.+-.+.-+++
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 99888888999999999996542 345677889999998753 445688888999999999999999999999999
Q ss_pred HHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCC
Q 001796 788 SALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSS 840 (1012)
Q Consensus 788 ~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~ 840 (1012)
++||||+.- +++-|+.+++.|+++.|..|+++.+..+-.-++.||.||-.+.
T Consensus 552 GTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 999999985 7888999999999999999999999999999999999996554
No 15
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.72 E-value=6.1e-15 Score=156.89 Aligned_cols=409 Identities=16% Similarity=0.110 Sum_probs=297.0
Q ss_pred hccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC-------ChHHHHHHHHHHHhc
Q 001796 459 QQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG-------AESSRILMMKALLSM 531 (1012)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L 531 (1012)
...|+++.|....+|++.++-....++|.|+|..++++|..+.+.|+-..++++|+.- +.+.-.-+...|.|.
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 3468899999999999999999999999999999999999999999988888888642 123344455567776
Q ss_pred cc-ccchhhHhhhcCChHHHHhhhc--CCChhHHHHHHHHHHHhcCC-Cch-HHHHHHcCChHHHHHHhhcCCCChhHHH
Q 001796 532 EL-VDSNLELLGKEGIIPPLLGLVG--SGNFQSKELSLSVLVKLSGC-SKN-RELISAAGGIPQVLELMFSSHVPSNIIV 606 (1012)
Q Consensus 532 s~-~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~-~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 606 (1012)
.. +++.+.++.+.|+++.|...+. ..|....+..+...+||.+. .++ .....++...--+++++.+.. +..+.+
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v-~~d~~e 242 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMV-REDIDE 242 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhh-ccchhh
Confidence 66 5677999999999999999874 45666777787777777642 222 344456667777888887653 233558
Q ss_pred HHHHHHHHhhc-cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHH-------HHHHHhccCchHHHHHHHHh
Q 001796 607 KCSEILEKLSS-DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPAL-------RALFRICKSEAELVKIAVVK 678 (1012)
Q Consensus 607 ~a~~~L~nLa~-~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al-------~aL~~L~~~~~~~~~~~i~~ 678 (1012)
.+.++|...+. +.......+.| .++.++.+++.-.+.. -+..+. ....-+...++. .+.+..
T Consensus 243 M~feila~~aend~Vkl~la~~g-------l~e~~~~lv~~~k~~t-~k~d~~~l~k~~~el~vllltGDeS--Mq~L~~ 312 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNG-------LLEDSIDLVRNMKDFT-KKTDMLNLFKRIAELDVLLLTGDES--MQKLHA 312 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcc-------hHHHHHHHHHhccccc-chHHHHHHHHhhhhHhhhhhcCchH--HHHHhc
Confidence 88999999887 44444444444 5666666666521110 112222 222222223332 245555
Q ss_pred cC-cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcC----CCchHHHHHHHHHHhccCC
Q 001796 679 AN-GVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN----DAKHDVQMAAAGLLANLPK 753 (1012)
Q Consensus 679 ~g-~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~----~~~~~~~~~Aa~aL~nL~~ 753 (1012)
.| .++.++..+.+.+...+..+.-+++|+++. +.....+++.+.+..|+.+|.. .++-++|.+++.+|+||..
T Consensus 313 ~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~--D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSDDSNLITMGSLAIGNFARR--DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 55 577888899999999999999999999988 4455568899999999998833 2456788899999999998
Q ss_pred CCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHH-HcCCHHHHHHHHhcCCHH-HHHHHHH
Q 001796 754 SELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVV-ERGVYPLLVNLLQIGSIT-AKARAAA 831 (1012)
Q Consensus 754 ~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~-~~g~i~~Lv~lL~s~~~~-vk~~Aa~ 831 (1012)
..++ +..+..+|..+.++..++...|.+...-.++|..+..+. +.....+. ....+..|+++.++.+.. +--+.-+
T Consensus 391 Pv~n-ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~q-e~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnR 468 (604)
T KOG4500|consen 391 PVSN-KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQ-EYIACELAKNPELFEKLVDWSKSPDFAGVAGESNR 468 (604)
T ss_pred cCCc-hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhch-HHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhH
Confidence 6554 888999999999999999999999999999999887653 32222232 234688888888887654 5556666
Q ss_pred HHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhh
Q 001796 832 LIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQ 911 (1012)
Q Consensus 832 aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~ 911 (1012)
.+..|-.++.. .+-...+.+.|+|..+|.++..++..++.+|+.||+.+..
T Consensus 469 ll~~lIkHs~~-----------------------------kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 469 LLLGLIKHSKY-----------------------------KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred HHHHHHHhhHh-----------------------------hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 66665443321 0111445678999999999999999999999999998875
No 16
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=8.2e-14 Score=149.82 Aligned_cols=381 Identities=16% Similarity=0.177 Sum_probs=284.6
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhc
Q 001796 476 RESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVG 555 (1012)
Q Consensus 476 ~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~ 555 (1012)
......|...|.||+. +-..-..|....++..|+..|...+.+........|..|+...+|+..+++.|.|..|+++..
T Consensus 277 eqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC
Confidence 3455678888999984 445667788999999999999988888888889999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhH
Q 001796 556 SGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEP 635 (1012)
Q Consensus 556 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~ 635 (1012)
..+++++...+..|+|+|.+...|.+++..|.+|.|+.++.+.+.. ..|..+|
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~----~iA~~~l----------------------- 408 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH----GIALNML----------------------- 408 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc----hhhhhhh-----------------------
Confidence 9999999999999999999999999999999999999999887543 3334444
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCcc
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD-TDSEVREIAINLLFLFSHHEPEG 714 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~a~~~L~~ls~~~~~~ 714 (1012)
+.++...+ .+..+....+|+.++..+-. .+.++-...+.+--|++-. ..
T Consensus 409 --------------------------Yh~S~dD~--~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln--kR 458 (791)
T KOG1222|consen 409 --------------------------YHLSCDDD--AKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN--KR 458 (791)
T ss_pred --------------------------hhhccCcH--HHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc--cc
Confidence 44444333 33444555666666655333 3444444444443455543 22
Q ss_pred hHHhhhcCCChHHHHHh-hcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHHh
Q 001796 715 VVEYLLKPKRLEALVGF-LENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-TMEAKENALSALFR 792 (1012)
Q Consensus 715 ~~~~l~~~~~i~~Lv~l-L~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~ 792 (1012)
..+.+++..++..|++. ++..+. .-+..++|++.++...+..+++ .+..|...++.. +...--.+.++|.+
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~-----lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlan 531 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDL-----LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLAN 531 (791)
T ss_pred cceEEecCcchHHHHHHHhcccch-----HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhh
Confidence 33445667778888764 344322 2456788999877755555554 355666666655 44567789999999
Q ss_pred ccCCCCHHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCcc
Q 001796 793 FTDPTNLEAQRNVVERGVYPLLVNLLQIG--SITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGIC 870 (1012)
Q Consensus 793 Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~ 870 (1012)
|+.+ +-++...+.+.+.+|.+-..|..+ ..+.......+++.++.+.. |.
T Consensus 532 L~v~-dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~---------------------cA------ 583 (791)
T KOG1222|consen 532 LKVT-DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLD---------------------CA------ 583 (791)
T ss_pred cccC-CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhH---------------------HH------
Confidence 9986 678888899999999999999976 34566777777777654332 31
Q ss_pred CCCcchhhhhcCcchHHHHhccC--CChHHHHHHHHHHHHHhhccchhhhhHHh-hhcCCchHHHHHhccCChhhHhHHH
Q 001796 871 SESTSFCLLKANALPHLVKLLQG--RVHATAYEAIQTLSTLVQEGCQQRGVNVL-HQEEAIKPTLEILTWGTDSLKEEAL 947 (1012)
Q Consensus 871 s~~~~~~lv~~gai~~Lv~lL~~--~~~~v~~~Al~aL~~L~~~~~~~~~~~~i-~~~~~v~~L~~ll~s~~~~~~~~a~ 947 (1012)
.-+..+|.|+.|+++|+. ++++.+.+.+..+..+.. ++..++.+ .+...-..+++++++.+.++|.-+-
T Consensus 584 -----~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~---He~tr~~miket~~~AylIDLMHDkN~eiRkVCD 655 (791)
T KOG1222|consen 584 -----RLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLK---HELTRRLMIKETALGAYLIDLMHDKNAEIRKVCD 655 (791)
T ss_pred -----HHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHH---HHHHHHHHHhhccchHHHHHHHhcccHHHHHHHH
Confidence 223358999999999975 678889999999999987 46666665 4555567899999999999999999
Q ss_pred HHHHHHhchH
Q 001796 948 GFLEKVFMSK 957 (1012)
Q Consensus 948 ~aL~~l~~~~ 957 (1012)
.+|.-++.+.
T Consensus 656 n~LdIiae~d 665 (791)
T KOG1222|consen 656 NALDIIAEHD 665 (791)
T ss_pred HHHHHHHHhh
Confidence 9999888874
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=6e-15 Score=175.23 Aligned_cols=360 Identities=17% Similarity=0.152 Sum_probs=273.3
Q ss_pred HHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC---ChHHHHHHHHHHHhcccc-cchhhHhhhcCChHHHHhh---
Q 001796 481 CAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG---AESSRILMMKALLSMELV-DSNLELLGKEGIIPPLLGL--- 553 (1012)
Q Consensus 481 ~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~l--- 553 (1012)
.-+..+..++ .+++....|...|.++.|+++|... +.+.+..|-.+|.|+... ++.+..=.+..+++.|=++
T Consensus 213 e~ar~fLemS-ss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraY 291 (2195)
T KOG2122|consen 213 EMARTFLEMS-SSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAY 291 (2195)
T ss_pred HHHHHHHHhc-cCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 3444555564 5778889999999999999999754 456788899999999873 2222222222333333221
Q ss_pred -------hcCCC-------hh-HHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhcc
Q 001796 554 -------VGSGN-------FQ-SKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSD 618 (1012)
Q Consensus 554 -------L~~~~-------~~-~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~ 618 (1012)
+.... .+ -...|+.+|..++.++++|.+|.+.|++..+-+|+.-....-. ++..+
T Consensus 292 C~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhg----------p~tnd 361 (2195)
T KOG2122|consen 292 CETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHG----------PETND 361 (2195)
T ss_pred HHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcC----------CCCCc
Confidence 11111 12 2347889999999999999999999999999988764321100 00000
Q ss_pred CccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHH-hcCcHHHHHHhhcCCCHHHH
Q 001796 619 GIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVV-KANGVSLILSLLDDTDSEVR 697 (1012)
Q Consensus 619 ~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~-~~g~v~~Lv~ll~~~~~~v~ 697 (1012)
+ ....++.+|.++|.||+....+ .+..+. ..|.+..+|..|.+..+++.
T Consensus 362 ---------~--------------------~~~aLRrYa~MALTNLTFGDv~-NKa~LCs~rgfMeavVAQL~s~peeL~ 411 (2195)
T KOG2122|consen 362 ---------G--------------------ECNALRRYAGMALTNLTFGDVA-NKATLCSQRGFMEAVVAQLISAPEELL 411 (2195)
T ss_pred ---------H--------------------HHHHHHHHHHHHhhcccccccc-chhhhhhhhhHHHHHHHHHhcChHHHH
Confidence 0 0013789999999999886544 344444 45789999999988888888
Q ss_pred HHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHh-hccHHHHHHHhc
Q 001796 698 EIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIE-LDGLNAIINILK 776 (1012)
Q Consensus 698 ~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~-~g~i~~Lv~lL~ 776 (1012)
.--..+|+||+=....+...++.+.|-+..|+..--....+....+.+.+||||+.+..+++..|.. .|++..|+.+|.
T Consensus 412 QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LS 491 (2195)
T KOG2122|consen 412 QVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLS 491 (2195)
T ss_pred HHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcc
Confidence 8888999999977777888899999999999986533335567778899999999999888999985 799999999997
Q ss_pred CC----ChhHHHHHHHHHHhccCC--CCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCC
Q 001796 777 SG----TMEAKENALSALFRFTDP--TNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESA 850 (1012)
Q Consensus 777 ~~----~~~~~~~a~~aL~~Ls~~--~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~ 850 (1012)
.. +-.+.+.+-++|.|.+.. ....+|.++.+++.+..|++.|++.+-.+..+++++|+||+..
T Consensus 492 Y~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR----------- 560 (2195)
T KOG2122|consen 492 YEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR----------- 560 (2195)
T ss_pred ccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-----------
Confidence 65 346889999999998744 3466788999999999999999999999999999999999652
Q ss_pred cccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhc
Q 001796 851 GCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQE 912 (1012)
Q Consensus 851 ~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~ 912 (1012)
+++....+++.|+|+.|..++++.+.-+...++.||.||...
T Consensus 561 --------------------~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 561 --------------------SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred --------------------CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence 234447789999999999999998888999999999999973
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=5.9e-13 Score=137.97 Aligned_cols=346 Identities=18% Similarity=0.204 Sum_probs=258.4
Q ss_pred HHHHHHHHHHhhccccchhHhccCchHHHHHHhc--cCCCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccccc
Q 001796 350 EALDQMQDLMRESSINKDWISIGGITDIIISILG--SSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR 427 (1012)
Q Consensus 350 ~~l~~l~~l~~~~~~~r~~i~~~g~v~~Lv~lL~--~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~ 427 (1012)
+-+.++.+-|+.+..+|......|+.+.++-.+. ++++.....+++.+|..+..+.++.+
T Consensus 81 ~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~------------------ 142 (461)
T KOG4199|consen 81 ELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLF------------------ 142 (461)
T ss_pred HHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchh------------------
Confidence 3444555555555555655666777776654443 44556666677777766665544321
Q ss_pred CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCC
Q 001796 428 DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIK--GPVRESAECAEKILQQLFDVDEENFCRAAKSGW 505 (1012)
Q Consensus 428 ~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~ 505 (1012)
+..+...++.+|. .++.++-......+..-|..++.||..+++.++
T Consensus 143 --------------------------------da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i 190 (461)
T KOG4199|consen 143 --------------------------------DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKI 190 (461)
T ss_pred --------------------------------ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence 2245566666665 334556666677777777889999999999999
Q ss_pred cHHHHHHH-hcCChHHHHHHHHHHHhcccccc----------hhhHhhhcCChHHHHhhhcCC-ChhHHHHHHHHHHHhc
Q 001796 506 YKPLIDRI-IQGAESSRILMMKALLSMELVDS----------NLELLGKEGIIPPLLGLVGSG-NFQSKELSLSVLVKLS 573 (1012)
Q Consensus 506 i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls~~~~----------~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls 573 (1012)
++.+...| ..|..++-+...++++-|..+++ +-..|+..|+...|++.+..+ +|.+.-..+.+|..|+
T Consensus 191 l~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA 270 (461)
T KOG4199|consen 191 LELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA 270 (461)
T ss_pred HHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH
Confidence 99999766 45556677888899998887655 345677889999999998654 5788888999999999
Q ss_pred CCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhh
Q 001796 574 GCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNV 653 (1012)
Q Consensus 574 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~ 653 (1012)
..++-+..|.++|++..|++++.+.+.... ...
T Consensus 271 Vr~E~C~~I~e~GGl~tl~~~i~d~n~~~~-----------------------------------------------r~l 303 (461)
T KOG4199|consen 271 VRDEICKSIAESGGLDTLLRCIDDSNEQGN-----------------------------------------------RTL 303 (461)
T ss_pred HHHHHHHHHHHccCHHHHHHHHhhhchhhH-----------------------------------------------HHH
Confidence 999999999999999999999998654311 013
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHh
Q 001796 654 RKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD--TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGF 731 (1012)
Q Consensus 654 ~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~l 731 (1012)
.+.++..|..|+.+++ ++..|++.||.+.++.++.. .+|.+.+.++.++..++-..|+... .+++.|+-...++.
T Consensus 304 ~k~~lslLralAG~Ds--vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa-~~ie~G~a~~avqA 380 (461)
T KOG4199|consen 304 AKTCLSLLRALAGSDS--VKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSA-KAIEAGAADLAVQA 380 (461)
T ss_pred HHHHHHHHHHHhCCCc--hHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHH-HHHhcchHHHHHHH
Confidence 4556667777776665 57999999999999988643 5788999999999988877666554 46788988888988
Q ss_pred hc-CCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCC
Q 001796 732 LE-NDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDP 796 (1012)
Q Consensus 732 L~-~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 796 (1012)
++ ++....+|.+|++.++|+...+.+++..++..| ++.|+..-+..++.....|-.+|..|.-.
T Consensus 381 mkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 381 MKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 85 455577999999999999998888777777665 77787777777888888888889888653
No 19
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.63 E-value=2.2e-16 Score=130.70 Aligned_cols=63 Identities=48% Similarity=0.726 Sum_probs=60.5
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHH
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEW 324 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~ 324 (1012)
+|.||||+++|+|||+++|||+|||+||.+|+.. +.+||.|++++...+++||..+|+.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999987 77999999999999999999999999998
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=2.3e-13 Score=140.99 Aligned_cols=324 Identities=14% Similarity=0.151 Sum_probs=250.3
Q ss_pred hhhhhhhccChHHHHHHHhc---CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC--ChHHHHHHHHH
Q 001796 453 VCRKLSQQCSGILFLVTLIK---GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG--AESSRILMMKA 527 (1012)
Q Consensus 453 ~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~a 527 (1012)
.++......|+.+.++..+. +++.....++..+|..+.... ..+.++.+...++.+|... +.++.......
T Consensus 95 A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~ 170 (461)
T KOG4199|consen 95 AHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQW 170 (461)
T ss_pred HHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC----cchhccccHHHHHHHHhcccchHHHHHHHHHH
Confidence 34555566788888877665 556677888888888886444 4567888999999999644 44555555556
Q ss_pred HHhccc-ccchhhHhhhcCChHHHHhhh-cCCChhHHHHHHHHHHHhcCCCch----------HHHHHHcCChHHHHHHh
Q 001796 528 LLSMEL-VDSNLELLGKEGIIPPLLGLV-GSGNFQSKELSLSVLVKLSGCSKN----------RELISAAGGIPQVLELM 595 (1012)
Q Consensus 528 L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~----------~~~i~~~g~i~~Lv~lL 595 (1012)
+..-+. ++.||..+++.++.|.+.+.| ..+..++.....++++-|..+++- .+.|...|++..|++.+
T Consensus 171 v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal 250 (461)
T KOG4199|consen 171 LQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEAL 250 (461)
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHH
Confidence 666555 788999999999999999766 445567888899999999876653 46677788888888888
Q ss_pred hcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHH
Q 001796 596 FSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIA 675 (1012)
Q Consensus 596 ~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~ 675 (1012)
.-+-.+. .-..++.+|..|+...+ .++.
T Consensus 251 ~A~~dp~--------------------------------------------------~L~~l~~tl~~lAVr~E--~C~~ 278 (461)
T KOG4199|consen 251 QAGIDPD--------------------------------------------------SLVSLSTTLKALAVRDE--ICKS 278 (461)
T ss_pred HccCCcc--------------------------------------------------HHHHHHHHHHHHHHHHH--HHHH
Confidence 8764331 22233334444444333 6789
Q ss_pred HHhcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhh-cCCCchHHHHHHHHHHhc
Q 001796 676 VVKANGVSLILSLLDDTD-SE---VREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFL-ENDAKHDVQMAAAGLLAN 750 (1012)
Q Consensus 676 i~~~g~v~~Lv~ll~~~~-~~---v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL-~~~~~~~~~~~Aa~aL~n 750 (1012)
|.+.||+..|+.++.+.+ .. ....|+.+|+.++.. +..+..+++.|+.+.++.++ ++.+++.+...++.+++-
T Consensus 279 I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~--DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~ 356 (461)
T KOG4199|consen 279 IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS--DSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISI 356 (461)
T ss_pred HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC--CchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 999999999999998854 33 446778888888876 56667789999999999976 677788899999999999
Q ss_pred cCCCCHHHHHHHHhhccHHHHHHHhcCC--ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHH
Q 001796 751 LPKSELSLTMKLIELDGLNAIINILKSG--TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKAR 828 (1012)
Q Consensus 751 L~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~ 828 (1012)
|+...+++...+++.|+-...++.|+.. ...+++++++++.|+... +.+++..+ -..++..|+..-...++.++..
T Consensus 357 l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~-l~~GiE~Li~~A~~~h~tce~~ 434 (461)
T KOG4199|consen 357 LCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTIL-LANGIEKLIRTAKANHETCEAA 434 (461)
T ss_pred HHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchH-HhccHHHHHHHHHhcCccHHHH
Confidence 9999999999999999999999999865 346899999999999875 45655544 4567888898888889999999
Q ss_pred HHHHHHhh
Q 001796 829 AAALIGTL 836 (1012)
Q Consensus 829 Aa~aL~nL 836 (1012)
|-.||+.|
T Consensus 435 akaALRDL 442 (461)
T KOG4199|consen 435 AKAALRDL 442 (461)
T ss_pred HHHHHHhc
Confidence 99999998
No 21
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.8e-13 Score=145.76 Aligned_cols=378 Identities=16% Similarity=0.168 Sum_probs=274.9
Q ss_pred HHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHH
Q 001796 433 LAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDR 512 (1012)
Q Consensus 433 ~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~l 512 (1012)
+.|+.+|.|++.+-+ .+.-+++...+..||..|...+.+........|..|+ .-.+|+..|.+.|.++.|+++
T Consensus 281 rva~ylLlNlAed~~------~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~kl 353 (791)
T KOG1222|consen 281 RVAVYLLLNLAEDIS------VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLLKL 353 (791)
T ss_pred HHHHHHHHHHhhhhh------HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHHHh
Confidence 567888999987532 2334566788999999999888888899999999996 566899999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHH
Q 001796 513 IIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVL 592 (1012)
Q Consensus 513 L~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv 592 (1012)
+....++.+......|+|++.+..++..+++.|.+|.|+.+|.+++. ..-|+..|+.+|.+++.+..+.-..+|+.++
T Consensus 354 fp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lm 431 (791)
T KOG1222|consen 354 FPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLM 431 (791)
T ss_pred cCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976543 4568999999999999998888899999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHH
Q 001796 593 ELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELV 672 (1012)
Q Consensus 593 ~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~ 672 (1012)
+.+-++..... ..+ .+..-.|+|.+..+.
T Consensus 432 k~v~~~~~~~v--dl~------------------------------------------------lia~ciNl~lnkRNa- 460 (791)
T KOG1222|consen 432 KDVLSGTGSEV--DLA------------------------------------------------LIALCINLCLNKRNA- 460 (791)
T ss_pred HHHHhcCCcee--cHH------------------------------------------------HHHHHHHHHhccccc-
Confidence 88776643311 111 111112333333321
Q ss_pred HHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhcc
Q 001796 673 KIAVVKANGVSLILSLL-DDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANL 751 (1012)
Q Consensus 673 ~~~i~~~g~v~~Lv~ll-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL 751 (1012)
+.+.+..|+..|++.- ...++- -.+.++++|.+.+...... -..+..|..+++...++..-..++|+|+||
T Consensus 461 -QlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~F---idyvgdLa~i~~nd~~E~F~~EClGtlanL 532 (791)
T KOG1222|consen 461 -QLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMF---IDYVGDLAGIAKNDNSESFGLECLGTLANL 532 (791)
T ss_pred -eEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHH---HHHHHHHHHHhhcCchHHHHHHHHHHHhhc
Confidence 3344444455555442 222221 2478899998855443332 246778888888877777888899999999
Q ss_pred CCCCHHHHHHHHhhccHHHHHHHhcCCC--hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC--CHHHHH
Q 001796 752 PKSELSLTMKLIELDGLNAIINILKSGT--MEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG--SITAKA 827 (1012)
Q Consensus 752 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~--~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~vk~ 827 (1012)
...+..+.+.+.+...+|-+-..|+.+- .+.+-..+-++..++.. ......+...++|+.|+++|+.. +++...
T Consensus 533 ~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d--~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~ 610 (791)
T KOG1222|consen 533 KVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD--LDCARLLAPAKLIDTLIELLQACQEDDEFVV 610 (791)
T ss_pred ccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh--hHHHHHhCccccHHHHHHHHHhhcccchHHH
Confidence 9988888888889999999999998873 34555666666666553 34445666789999999999964 333333
Q ss_pred HHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhh-hcCcchHHHHhccCCChHHHHHHHHHH
Q 001796 828 RAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLL-KANALPHLVKLLQGRVHATAYEAIQTL 906 (1012)
Q Consensus 828 ~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv-~~gai~~Lv~lL~~~~~~v~~~Al~aL 906 (1012)
........+- .|.. ++..++ +...-..|++++++.+.+++..+=.+|
T Consensus 611 QiiyVF~Q~l---------------------------~He~-----tr~~miket~~~AylIDLMHDkN~eiRkVCDn~L 658 (791)
T KOG1222|consen 611 QIIYVFLQFL---------------------------KHEL-----TRRLMIKETALGAYLIDLMHDKNAEIRKVCDNAL 658 (791)
T ss_pred HHHHHHHHHH---------------------------HHHH-----HHHHHHhhccchHHHHHHHhcccHHHHHHHHHHH
Confidence 3333333331 1111 112333 445556799999999999999988888
Q ss_pred HHHhhc
Q 001796 907 STLVQE 912 (1012)
Q Consensus 907 ~~L~~~ 912 (1012)
.-++..
T Consensus 659 dIiae~ 664 (791)
T KOG1222|consen 659 DIIAEH 664 (791)
T ss_pred HHHHHh
Confidence 888853
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.57 E-value=6.7e-13 Score=141.55 Aligned_cols=410 Identities=16% Similarity=0.158 Sum_probs=293.5
Q ss_pred hhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-ccchhhHhhhcCChHHHHhhhcC----CC---hhHHHHHHHHHHHh
Q 001796 501 AKSGWYKPLIDRIIQGAESSRILMMKALLSMEL-VDSNLELLGKEGIIPPLLGLVGS----GN---FQSKELSLSVLVKL 572 (1012)
Q Consensus 501 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~----~~---~~~~~~a~~~L~~L 572 (1012)
+++|++++|.+...+++.++-....++|+|+|. ++++|..+.+.|+-..+++.|+. ++ .+....+.+.|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 567888888888888889999999999999999 78999999999998888887753 22 35677788888888
Q ss_pred cCC-CchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc---cCccceecccCCccchhHHHHHHHHHHhccC
Q 001796 573 SGC-SKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS---DGIKFLVDEKGNRLELEPIVTNLLTLQQNFN 648 (1012)
Q Consensus 573 s~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~---~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~ 648 (1012)
... ++.+..+++.|.++.|+.++.-+..+....+.+.....||.+ +....+.. ....+..+++++....
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~-------d~sl~~~l~~ll~~~v 236 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCK-------DCSLVFMLLQLLPSMV 236 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhc-------cchHHHHHHHHHHHhh
Confidence 854 455899999999999999998887777777887777777776 21111111 1235666777776533
Q ss_pred CChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHH-------HhccCCCcchHHhhh
Q 001796 649 SSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD-TDSEVREIAINLLF-------LFSHHEPEGVVEYLL 720 (1012)
Q Consensus 649 ~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~a~~~L~-------~ls~~~~~~~~~~l~ 720 (1012)
.+++.+-+..+|...+.++. ++-.+++.|.+..++++++. ++..-...+...+. .+..+ .+.....+.
T Consensus 237 -~~d~~eM~feila~~aend~--Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG-DeSMq~L~~ 312 (604)
T KOG4500|consen 237 -REDIDEMIFEILAKAAENDL--VKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG-DESMQKLHA 312 (604)
T ss_pred -ccchhhHHHHHHHHHhcCcc--eeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC-chHHHHHhc
Confidence 24567777777777766554 56777888988888888876 22222222222222 22222 233322233
Q ss_pred cCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcC-----CChhHHHHHHHHHHhccC
Q 001796 721 KPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKS-----GTMEAKENALSALFRFTD 795 (1012)
Q Consensus 721 ~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~-----~~~~~~~~a~~aL~~Ls~ 795 (1012)
.+..+..++..+.+. +.+.+..++-+++|++.++. ++..+++.|.+..|++++.. |+.+.+..++.+|.|+..
T Consensus 313 ~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 313 DPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 334788888888877 67888889999999999665 58889999999999998754 466789999999999998
Q ss_pred CCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcc
Q 001796 796 PTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTS 875 (1012)
Q Consensus 796 ~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~ 875 (1012)
+- -++..+...|+...+...++...|.+...--+.++.+-..-++ ..|..-.+
T Consensus 391 Pv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~------------------~a~eL~kn------- 443 (604)
T KOG4500|consen 391 PV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY------------------IACELAKN------- 443 (604)
T ss_pred cC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH------------------HHHHHhcC-------
Confidence 73 3357788999999999999999998888877777766211110 01211111
Q ss_pred hhhhhcCcchHHHHhccCCCh-HHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHh
Q 001796 876 FCLLKANALPHLVKLLQGRVH-ATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVF 954 (1012)
Q Consensus 876 ~~lv~~gai~~Lv~lL~~~~~-~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~ 954 (1012)
-..+..||+--++++. ++.-+....|..|..+.........+.+.|||+..+..+...+-.++..|.-+|+.+.
T Consensus 444 -----~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~ 518 (604)
T KOG4500|consen 444 -----PELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE 518 (604)
T ss_pred -----HHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence 2334556665555554 4677788888888764222344456788999999999999888889999988888776
Q ss_pred c
Q 001796 955 M 955 (1012)
Q Consensus 955 ~ 955 (1012)
.
T Consensus 519 ~ 519 (604)
T KOG4500|consen 519 S 519 (604)
T ss_pred H
Confidence 4
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.49 E-value=3.4e-11 Score=142.02 Aligned_cols=396 Identities=19% Similarity=0.231 Sum_probs=277.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccch-hhHhhhc
Q 001796 466 FLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSN-LELLGKE 544 (1012)
Q Consensus 466 ~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~ 544 (1012)
.+...|++.+.+....++.+|..+....+ . .-...+..+.|...|.++++.+|..++..|.++..+.+. ...+.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~-~--~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALS-P--DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccC-H--HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 36777777777888888888888864321 1 112677888999999999999999999999999886655 5556679
Q ss_pred CChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCcccee
Q 001796 545 GIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLV 624 (1012)
Q Consensus 545 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~ 624 (1012)
+.++.++..+.+++..+.+.|+.+|.+|+.++.+...+...+.++.|..++...++.
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~----------------------- 175 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDI----------------------- 175 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHH-----------------------
Confidence 999999999999999999999999999999998888888888899998888774322
Q ss_pred cccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 001796 625 DEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLL 704 (1012)
Q Consensus 625 ~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L 704 (1012)
+|..+..++.+++..++. ....+.+.|.++.++..+.++|.-++.+|+.+|
T Consensus 176 ----------------------------vR~Rv~el~v~i~~~S~~-~~~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 176 ----------------------------VRCRVYELLVEIASHSPE-AAEAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred ----------------------------HHHHHHHHHHHHHhcCHH-HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 445566677777766555 467788899999999999998889999999999
Q ss_pred HHhccCCCcchHHhhhcCCChHHHHHhhcCCCchH-----HHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCC
Q 001796 705 FLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHD-----VQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGT 779 (1012)
Q Consensus 705 ~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~-----~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 779 (1012)
..++.. +++ ...+.+.|+++.|++++....... ..-..+...++++...+..... .-...+..+.+++.+.+
T Consensus 227 ~~La~~-~~g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 227 SELAET-PHG-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHcC-hhH-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCC
Confidence 999984 444 456788999999999996542222 1122334555565533321100 11234455566677889
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHH-HHc-CCHHH----HHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCccc
Q 001796 780 MEAKENALSALFRFTDPTNLEAQRNV-VER-GVYPL----LVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCW 853 (1012)
Q Consensus 780 ~~~~~~a~~aL~~Ls~~~~~~~~~~i-~~~-g~i~~----Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~ 853 (1012)
+..+..|..++..++.. .+-...+ ... +.++. .-....++..++|..+..+|.++-..... +..+
T Consensus 304 ~~~~~~A~dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~----~~~~--- 374 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTD----RQDN--- 374 (503)
T ss_pred hhHHHHHHHHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCC----CchH---
Confidence 99999999999999875 4544545 332 23333 44444567788999999999999332210 0000
Q ss_pred ccCCCCCccccccCCccCCCcchhhhhcCcch-HHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCC-chHH
Q 001796 854 CFRPSRAHLCQVHGGICSESTSFCLLKANALP-HLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEA-IKPT 931 (1012)
Q Consensus 854 c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~-~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~-v~~L 931 (1012)
..... .+.-+.....+... .+..+++.+-++++.++...|..|+. ++.+.+.|...+| ++.+
T Consensus 375 -------~i~~~------~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~---~~Wg~~~i~~~~gfie~l 438 (503)
T PF10508_consen 375 -------DILSI------TESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA---QPWGQREICSSPGFIEYL 438 (503)
T ss_pred -------HHHHH------HHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc---CHHHHHHHHhCccHHhhh
Confidence 00000 00112333344445 77888887779999999999999998 5888888876666 4444
Q ss_pred HHHhccCChhhHh
Q 001796 932 LEILTWGTDSLKE 944 (1012)
Q Consensus 932 ~~ll~s~~~~~~~ 944 (1012)
++--...+.+.++
T Consensus 439 ldr~~E~~K~~ke 451 (503)
T PF10508_consen 439 LDRSTETTKEGKE 451 (503)
T ss_pred cCCCCCCCHHHHH
Confidence 4433333444443
No 24
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.43 E-value=1.4e-11 Score=138.99 Aligned_cols=483 Identities=15% Similarity=0.047 Sum_probs=300.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC--ChHHHHHHHHHHHhccc-ccchhhHhhhcCC
Q 001796 470 LIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG--AESSRILMMKALLSMEL-VDSNLELLGKEGI 546 (1012)
Q Consensus 470 lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~ 546 (1012)
-+.+.+++....|..-..|++..++.++....+.|+++.|+.+++.. ..+.+...+..+..+.. .......+.+.+.
T Consensus 17 ~L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ 96 (678)
T KOG1293|consen 17 RLLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIE 96 (678)
T ss_pred hhhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhh
Confidence 34456788888899999999999999999999999999999999765 45566556666666666 5566788889999
Q ss_pred hHHHHhhhcCCC-hhHHHHHHHHHHHhcCCCchHHH---HHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccc
Q 001796 547 IPPLLGLVGSGN-FQSKELSLSVLVKLSGCSKNREL---ISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKF 622 (1012)
Q Consensus 547 i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~---i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~ 622 (1012)
++.|.++|++.| ..+++..++++.++-........ ......++.+..++...... ....-+....+++.
T Consensus 97 ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~--~~~l~~~~~a~~s~----- 169 (678)
T KOG1293|consen 97 LLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKY--ISRLDVSRAAHLSS----- 169 (678)
T ss_pred HHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhh--hhhhhhhhhccccc-----
Confidence 999999999988 77999999999999865433322 22333444444444411111 11222233334443
Q ss_pred eecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHH---HhccCchHH---HHHHHHhcCcHH--HHHHhhcCCCH
Q 001796 623 LVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALF---RICKSEAEL---VKIAVVKANGVS--LILSLLDDTDS 694 (1012)
Q Consensus 623 ~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~---~L~~~~~~~---~~~~i~~~g~v~--~Lv~ll~~~~~ 694 (1012)
...+...+++.++.+.+..++...+ ...|..|+..+. ++.++++.. ........|..+ .+-.++.+++.
T Consensus 170 -~~~hq~Il~Na~i~ekI~~l~~~~s--~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~ 246 (678)
T KOG1293|consen 170 -TKDHQLILCNAGILEKINILLMYLS--SKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDF 246 (678)
T ss_pred -cchhhheeccccchhhHHHHHHhhh--HHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCc
Confidence 1123334445556666555544422 347888888888 666655432 234445556655 45567778877
Q ss_pred HHHHHHHHHHHHhccCC--Ccc--hHHhhhcCC--ChHH--HHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhc
Q 001796 695 EVREIAINLLFLFSHHE--PEG--VVEYLLKPK--RLEA--LVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELD 766 (1012)
Q Consensus 695 ~v~~~a~~~L~~ls~~~--~~~--~~~~l~~~~--~i~~--Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g 766 (1012)
..+..++.++-.+-..+ .+. ...++.+.| .+-. .+.+...+ ......+++..-+.++.--..+.....+..
T Consensus 247 s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P-~~s~l~~~~~l~c~~a~~~sklq~~~~e~~ 325 (678)
T KOG1293|consen 247 SERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDP-GLSTLDHTNVLFCILARFASKLQLPQHEEA 325 (678)
T ss_pred cHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCC-ceeehhhhhhhHHHHHHHHHhhhhHHhhhh
Confidence 77777766555432221 000 111111111 0100 11111111 111112233333333322233445556677
Q ss_pred cHHHHHHHhcCC------ChhHHHHH---HHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 767 GLNAIINILKSG------TMEAKENA---LSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 767 ~i~~Lv~lL~~~------~~~~~~~a---~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
.++.+++++..+ .++.+.-+ ...+..++......+++.+.+.-....+..+....+.+...+|+..+.+++
T Consensus 326 ~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~s 405 (678)
T KOG1293|consen 326 TLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFS 405 (678)
T ss_pred hhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 788888876533 33333222 223333443333444555555545555555555667888888888998887
Q ss_pred cCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhh
Q 001796 838 TSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQR 917 (1012)
Q Consensus 838 ~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~ 917 (1012)
.+...|.- . +-...+..|||++|.+++.-|...+++|++||+.+ ...
T Consensus 406 rsV~aL~t------------------------------g-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme--fs~ 452 (678)
T KOG1293|consen 406 RSVSALRT------------------------------G-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME--FSN 452 (678)
T ss_pred HHHHHHHc------------------------------C-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh--ccc
Confidence 75553320 0 22468899999999988888999999999999987 677
Q ss_pred hhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhchHh--hH-hhhcccccchhhhhhhhcccCCchHHHHHHHHHH
Q 001796 918 GVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKE--MV-DTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLS 994 (1012)
Q Consensus 918 ~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~--~~-~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~ 994 (1012)
-+..+.+.|||..+..++.+.++..+.++.|+|.++....+ .. +.+.....-.+.++.. +.+..+++.+-..|+
T Consensus 453 ~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~n---d~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 453 LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIN---DPDWAVQEQCFQLLR 529 (678)
T ss_pred HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 78888888999999999999999999999999999876522 22 2222221113344443 788999999999999
Q ss_pred HHHhc
Q 001796 995 LIERY 999 (1012)
Q Consensus 995 ~L~~~ 999 (1012)
+|.-.
T Consensus 530 Nl~c~ 534 (678)
T KOG1293|consen 530 NLTCN 534 (678)
T ss_pred HhhcC
Confidence 88644
No 25
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.38 E-value=1.7e-11 Score=129.72 Aligned_cols=194 Identities=20% Similarity=0.266 Sum_probs=165.7
Q ss_pred hhhcCCccccccccc--cCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 001796 412 VIDYGGWDHIVPCLG--RDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQL 489 (1012)
Q Consensus 412 i~~~g~i~~lv~lL~--~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~L 489 (1012)
+.+++.++.|+.+|. .|+..++.|..++.+.+..+. .+.++.+.|+++.+..+|.++++.++..|..+|.|+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~------nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF------NQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh------HHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 456677888899984 478999999999999877653 477888999999999999999999999999999999
Q ss_pred hcCChhhHHHHhhcCCcHHHHHHHhcC--ChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHH
Q 001796 490 FDVDEENFCRAAKSGWYKPLIDRIIQG--AESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLS 567 (1012)
Q Consensus 490 a~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~ 567 (1012)
+ .+.+|+..+.. .++.+++...+. +..++..++++|.+|+..++++..+. +.+|.|+.+|.+++..++..+++
T Consensus 82 s-~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 82 S-VNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred C-CChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 7 56677777643 688888877654 67889999999999999888877775 47999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 001796 568 VLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS 617 (1012)
Q Consensus 568 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~ 617 (1012)
+|.|||.++.....++.+++++.++.++....... ....+..++.|+..
T Consensus 157 ~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~-~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKE-NLLRVLTFFENINE 205 (254)
T ss_pred HHHHhccCHHHHHHHHhccchhHHHHHHccCCccH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875543 44778888889876
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.35 E-value=2e-10 Score=135.52 Aligned_cols=396 Identities=16% Similarity=0.171 Sum_probs=269.6
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccccc-CChhhHHHHHHHHHHhhccCCchHHhh
Q 001796 376 DIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVC 454 (1012)
Q Consensus 376 ~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~ 454 (1012)
+.+...|.++ +.+....++..|..+.....- ... ..+..+.+...|.+ ++.++..++..|.++..+++. .
T Consensus 41 ~~lf~~L~~~-~~e~v~~~~~iL~~~l~~~~~-~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-----~ 111 (503)
T PF10508_consen 41 PVLFDCLNTS-NREQVELICDILKRLLSALSP-DSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-----A 111 (503)
T ss_pred HHHHHHHhhc-ChHHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-----H
Confidence 3366667653 555555666667666543211 111 23345666677754 568899999999998876532 2
Q ss_pred hhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-
Q 001796 455 RKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL- 533 (1012)
Q Consensus 455 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~- 533 (1012)
..+..+.+.++.++..+.+++.++...|+.+|.+++... .....+.+.+.++.|..++...++.+|..+..++.+++.
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 445567899999999999999999999999999998654 455567788889999999998788899999999999987
Q ss_pred ccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChh----HHHHHH
Q 001796 534 VDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSN----IIVKCS 609 (1012)
Q Consensus 534 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~----~~~~a~ 609 (1012)
.++....+.+.|.++.+++.|.++|.-++.+++.+|..|+..+.+...+.+.|+++.|+.++.....++. ......
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~ 270 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM 270 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH
Confidence 4566677778999999999999988889999999999999999999999999999999999987755431 112222
Q ss_pred HHHHHhhc-cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHH-HhcC-cHHHHH
Q 001796 610 EILEKLSS-DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAV-VKAN-GVSLIL 686 (1012)
Q Consensus 610 ~~L~nLa~-~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i-~~~g-~v~~Lv 686 (1012)
....+++. +.... . -.-..++..+.+++.+.+ +..+..|..++..++...++. ..+ ...| .+...+
T Consensus 271 ~f~g~la~~~~~~v-~------~~~p~~~~~l~~~~~s~d--~~~~~~A~dtlg~igst~~G~--~~L~~~~~~~~~~~l 339 (503)
T PF10508_consen 271 KFFGNLARVSPQEV-L------ELYPAFLERLFSMLESQD--PTIREVAFDTLGQIGSTVEGK--QLLLQKQGPAMKHVL 339 (503)
T ss_pred HHHHHHHhcChHHH-H------HHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHhCCHHHH--HHHHhhcchHHHHHH
Confidence 44455553 11110 0 001334555566655544 558899999999999877653 444 3333 344443
Q ss_pred ----HhhcCCCHHHHHHHHHHHHHhccCCCc---c-h---HHh---hhcCCChH-HHHHhhcCCCchHHHHHHHHHHhcc
Q 001796 687 ----SLLDDTDSEVREIAINLLFLFSHHEPE---G-V---VEY---LLKPKRLE-ALVGFLENDAKHDVQMAAAGLLANL 751 (1012)
Q Consensus 687 ----~ll~~~~~~v~~~a~~~L~~ls~~~~~---~-~---~~~---l~~~~~i~-~Lv~lL~~~~~~~~~~~Aa~aL~nL 751 (1012)
....+...+++..++.++.++-...++ + . ... ....+... .++.+++.+ =++++.++...|..|
T Consensus 340 ~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l 418 (503)
T PF10508_consen 340 KAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQAL 418 (503)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHH
Confidence 345556778999999999998332222 1 1 000 11233334 566677654 478999999999999
Q ss_pred CCCCHHHHHHHHhhccHHHHHHHhcCCCh---hHHHHHHHHHHhc
Q 001796 752 PKSELSLTMKLIELDGLNAIINILKSGTM---EAKENALSALFRF 793 (1012)
Q Consensus 752 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~---~~~~~a~~aL~~L 793 (1012)
+......+...-..|.+..+++--...+. +.|...+.+|...
T Consensus 419 ~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 419 AAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKS 463 (503)
T ss_pred hcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99665544433345665555443222222 3566666666644
No 27
>PRK09687 putative lyase; Provisional
Probab=99.35 E-value=8.4e-11 Score=127.45 Aligned_cols=255 Identities=20% Similarity=0.141 Sum_probs=184.9
Q ss_pred CChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCcccee
Q 001796 545 GIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLV 624 (1012)
Q Consensus 545 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~ 624 (1012)
-.++.|..+|.+.+..++..++.+|..+.. ..+++.+..++.+.+
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d------------------------- 67 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKN------------------------- 67 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCC-------------------------
Confidence 356778888888888888888888876643 223455555554432
Q ss_pred cccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHH
Q 001796 625 DEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSL-LDDTDSEVREIAINL 703 (1012)
Q Consensus 625 ~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~v~~~a~~~ 703 (1012)
+.+|..++++|..|-..... ....++.|..+ ++++++.++..|+.+
T Consensus 68 --------------------------~~vR~~A~~aLg~lg~~~~~-------~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 68 --------------------------PIERDIGADILSQLGMAKRC-------QDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred --------------------------HHHHHHHHHHHHhcCCCccc-------hHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 33566667776666332110 11234666666 667788999999999
Q ss_pred HHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHH
Q 001796 704 LFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAK 783 (1012)
Q Consensus 704 L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 783 (1012)
|+.+...... ....+++.|...+.+. +..++..|+.+|+++.. + .+++.|+.++++.++.++
T Consensus 115 LG~~~~~~~~------~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~~--~---------~ai~~L~~~L~d~~~~VR 176 (280)
T PRK09687 115 TGHRCKKNPL------YSPKIVEQSQITAFDK-STNVRFAVAFALSVIND--E---------AAIPLLINLLKDPNGDVR 176 (280)
T ss_pred Hhcccccccc------cchHHHHHHHHHhhCC-CHHHHHHHHHHHhccCC--H---------HHHHHHHHHhcCCCHHHH
Confidence 9988543211 1123455566666665 67899999999988764 2 259999999999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccc
Q 001796 784 ENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLC 863 (1012)
Q Consensus 784 ~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~ 863 (1012)
..|+.+|.++... ++. +++.|+.+|.+.++.||..|+.+|+.+.
T Consensus 177 ~~A~~aLg~~~~~-~~~---------~~~~L~~~L~D~~~~VR~~A~~aLg~~~-------------------------- 220 (280)
T PRK09687 177 NWAAFALNSNKYD-NPD---------IREAFVAMLQDKNEEIRIEAIIGLALRK-------------------------- 220 (280)
T ss_pred HHHHHHHhcCCCC-CHH---------HHHHHHHHhcCCChHHHHHHHHHHHccC--------------------------
Confidence 9999999999432 232 5788999999999999999999998861
Q ss_pred cccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc-cCChhh
Q 001796 864 QVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT-WGTDSL 942 (1012)
Q Consensus 864 ~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~-s~~~~~ 942 (1012)
...++++|++.|.+++ +...++.||+.+... .+++.|.+++. ++++++
T Consensus 221 ----------------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-------------~a~p~L~~l~~~~~d~~v 269 (280)
T PRK09687 221 ----------------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-------------TLLPVLDTLLYKFDDNEI 269 (280)
T ss_pred ----------------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-------------hHHHHHHHHHhhCCChhH
Confidence 1468999999999755 666788888888763 57889999886 889999
Q ss_pred HhHHHHHHHH
Q 001796 943 KEEALGFLEK 952 (1012)
Q Consensus 943 ~~~a~~aL~~ 952 (1012)
+.+|.++|..
T Consensus 270 ~~~a~~a~~~ 279 (280)
T PRK09687 270 ITKAIDKLKR 279 (280)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.34 E-value=7.7e-11 Score=124.78 Aligned_cols=195 Identities=19% Similarity=0.190 Sum_probs=166.6
Q ss_pred hhcCCcHHHHHHHhc-CChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchH
Q 001796 501 AKSGWYKPLIDRIIQ-GAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNR 579 (1012)
Q Consensus 501 ~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 579 (1012)
.+++-++.|+.+|+. .++.++..+..++++.+..+.++..|.+.|+++.+..+|.++++.+++.|+.+|.|++...+|+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 567778999999985 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc-cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHH
Q 001796 580 ELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS-DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPAL 658 (1012)
Q Consensus 580 ~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~-~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al 658 (1012)
..|-. .++.+.+...+.+.+...+..++.+|.||+. +....+ ..+.++.|++++..++ ..+|.+++
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~---------l~~~i~~ll~LL~~G~--~~~k~~vL 155 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHM---------LANYIPDLLSLLSSGS--EKTKVQVL 155 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhh---------HHhhHHHHHHHHHcCC--hHHHHHHH
Confidence 88754 5888888777776666677889999999985 222221 2457899999999976 45899999
Q ss_pred HHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHhccC
Q 001796 659 RALFRICKSEAELVKIAVVKANGVSLILSLLDDT-DSEVREIAINLLFLFSHH 710 (1012)
Q Consensus 659 ~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~v~~~a~~~L~~ls~~ 710 (1012)
++|.||+.++.. .+.+..++++..++.++... +.++...++.++.|+..+
T Consensus 156 k~L~nLS~np~~--~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 156 KVLVNLSENPDM--TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHhccCHHH--HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 999999998874 47778888999999999886 677899999999999765
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.30 E-value=5.3e-10 Score=141.34 Aligned_cols=274 Identities=18% Similarity=0.135 Sum_probs=175.4
Q ss_pred CcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHH
Q 001796 505 WYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISA 584 (1012)
Q Consensus 505 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 584 (1012)
.++.|+..|.++++.+|..|+.+|..+. ..++++.|+.+|.++++.++..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-------- 683 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-------- 683 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--------
Confidence 4455566666666666666666665432 2345566666666556666666666665553211
Q ss_pred cCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHh
Q 001796 585 AGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRI 664 (1012)
Q Consensus 585 ~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L 664 (1012)
...+.|...|.+.+ ..++..++..|..+... ....|+..+.+ +++.++..|+.+|..+
T Consensus 684 -~~~~~L~~~L~~~d--~~VR~~A~~aL~~~~~~-----------------~~~~l~~~L~D--~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 684 -PPAPALRDHLGSPD--PVVRAAALDVLRALRAG-----------------DAALFAAALGD--PDHRVRIEAVRALVSV 741 (897)
T ss_pred -CchHHHHHHhcCCC--HHHHHHHHHHHHhhccC-----------------CHHHHHHHhcC--CCHHHHHHHHHHHhcc
Confidence 11234445554422 22334444444443210 01233444443 3355777777777654
Q ss_pred ccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHH
Q 001796 665 CKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAA 744 (1012)
Q Consensus 665 ~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~A 744 (1012)
- ..+.|..++.++++.+|..++..|..+.... ...++.|..+++++ +..++..|
T Consensus 742 ~---------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~----------~~~~~~L~~ll~D~-d~~VR~aA 795 (897)
T PRK13800 742 D---------------DVESVAGAATDENREVRIAVAKGLATLGAGG----------APAGDAVRALTGDP-DPLVRAAA 795 (897)
T ss_pred c---------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc----------chhHHHHHHHhcCC-CHHHHHHH
Confidence 1 1234567788889999999999888775431 23367777888776 57899999
Q ss_pred HHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHH
Q 001796 745 AGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSIT 824 (1012)
Q Consensus 745 a~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~ 824 (1012)
+.+|.++..... .++.+...+.+.++.+|..|+.+|..+... ..++.|+.+|.+.++.
T Consensus 796 ~~aLg~~g~~~~----------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 796 LAALAELGCPPD----------DVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHhcCCcch----------hHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHH
Confidence 999988865322 235677888888888999999999887432 2468899999999999
Q ss_pred HHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHH
Q 001796 825 AKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQ 904 (1012)
Q Consensus 825 vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~ 904 (1012)
||..|+.+|..+.. ...+.+.|...|.+++..|+.+|..
T Consensus 854 VR~~A~~aL~~~~~-----------------------------------------~~~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 854 VRKAAVLALTRWPG-----------------------------------------DPAARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred HHHHHHHHHhccCC-----------------------------------------CHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999987610 0235678888899888889998888
Q ss_pred HHH
Q 001796 905 TLS 907 (1012)
Q Consensus 905 aL~ 907 (1012)
||.
T Consensus 893 aL~ 895 (897)
T PRK13800 893 ALA 895 (897)
T ss_pred HHh
Confidence 875
No 30
>PRK09687 putative lyase; Provisional
Probab=99.28 E-value=3.3e-10 Score=122.89 Aligned_cols=255 Identities=18% Similarity=0.140 Sum_probs=178.8
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHh
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
--++.|..+|.+.+..++..|+..|..+- ...+++.+..++.++++.+|..++++|+.|......
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~-----------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG-----------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 45788889999999999999999988773 356778888888888999999999999987553221
Q ss_pred hhcCChHHHHhh-hcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCc
Q 001796 542 GKEGIIPPLLGL-VGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGI 620 (1012)
Q Consensus 542 ~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~ 620 (1012)
...+++.|..+ +.++++.++..|+.+|.+++...... ...++..+...+.+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~---------------------- 140 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK---------------------- 140 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC----------------------
Confidence 22467888877 56777889999999999986432111 000122232323222
Q ss_pred cceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHH
Q 001796 621 KFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIA 700 (1012)
Q Consensus 621 ~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a 700 (1012)
++.++..++.+|..+. + ..+++.|+.++.++++.++..|
T Consensus 141 -----------------------------~~~VR~~a~~aLg~~~---~---------~~ai~~L~~~L~d~~~~VR~~A 179 (280)
T PRK09687 141 -----------------------------STNVRFAVAFALSVIN---D---------EAAIPLLINLLKDPNGDVRNWA 179 (280)
T ss_pred -----------------------------CHHHHHHHHHHHhccC---C---------HHHHHHHHHHhcCCCHHHHHHH
Confidence 2346777777775442 1 1245778888888888888888
Q ss_pred HHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCCh
Q 001796 701 INLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTM 780 (1012)
Q Consensus 701 ~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 780 (1012)
+..|+.+..+ ...+++.|+.+|... +..++..|+.+|+.+.. + .++|.|++.++++.
T Consensus 180 ~~aLg~~~~~----------~~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~--~---------~av~~Li~~L~~~~- 236 (280)
T PRK09687 180 AFALNSNKYD----------NPDIREAFVAMLQDK-NEEIRIEAIIGLALRKD--K---------RVLSVLIKELKKGT- 236 (280)
T ss_pred HHHHhcCCCC----------CHHHHHHHHHHhcCC-ChHHHHHHHHHHHccCC--h---------hHHHHHHHHHcCCc-
Confidence 8888877322 124567788888665 67888888888887654 2 25888888888765
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 001796 781 EAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQ-IGSITAKARAAALIGT 835 (1012)
Q Consensus 781 ~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~vk~~Aa~aL~n 835 (1012)
++..++.+|.++..+ + ++|.|..++. +.++.++..|.++|..
T Consensus 237 -~~~~a~~ALg~ig~~---~---------a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 237 -VGDLIIEAAGELGDK---T---------LLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -hHHHHHHHHHhcCCH---h---------HHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 566788888888542 2 6788888886 6788888888888753
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.26 E-value=7.1e-10 Score=140.21 Aligned_cols=210 Identities=15% Similarity=0.128 Sum_probs=133.4
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 001796 683 SLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKL 762 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l 762 (1012)
+.|...|.++++.+|..|+.+|..+... ....|+..|.+. +..++..|+.+|..+..
T Consensus 687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~-------------~~~~l~~~L~D~-d~~VR~~Av~aL~~~~~--------- 743 (897)
T PRK13800 687 PALRDHLGSPDPVVRAAALDVLRALRAG-------------DAALFAAALGDP-DHRVRIEAVRALVSVDD--------- 743 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhccC-------------CHHHHHHHhcCC-CHHHHHHHHHHHhcccC---------
Confidence 3455666667777777777777665321 123455666555 55677777777776522
Q ss_pred HhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcC
Q 001796 763 IELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPK 842 (1012)
Q Consensus 763 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~ 842 (1012)
.+.|..++.++++.+|..++.+|..+.... ...++.|..++++.++.+|..|+.+|..+..
T Consensus 744 -----~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~----------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---- 804 (897)
T PRK13800 744 -----VESVAGAATDENREVRIAVAKGLATLGAGG----------APAGDAVRALTGDPDPLVRAAALAALAELGC---- 804 (897)
T ss_pred -----cHHHHHHhcCCCHHHHHHHHHHHHHhcccc----------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----
Confidence 234566677777778888888887775431 1236777777777777888888888877611
Q ss_pred CccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHh
Q 001796 843 FTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVL 922 (1012)
Q Consensus 843 l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i 922 (1012)
...++..|+..|.+++..|+..|+.+|..+...
T Consensus 805 -------------------------------------~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~---------- 837 (897)
T PRK13800 805 -------------------------------------PPDDVAAATAALRASAWQVRQGAARALAGAAAD---------- 837 (897)
T ss_pred -------------------------------------cchhHHHHHHHhcCCChHHHHHHHHHHHhcccc----------
Confidence 012335577777777777777788777766542
Q ss_pred hhcCCchHHHHHhccCChhhHhHHHHHHHHHhchHhhHhhhcccccchhhhhhhhcccCCchHHHHHHHHHHH
Q 001796 923 HQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSL 995 (1012)
Q Consensus 923 ~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~ 995 (1012)
.+++.|+.++.+.++.+|..|+++|..+-..++... .|...++ +.|..+|+.|..+|.+
T Consensus 838 ---~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~--------~L~~al~---D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 838 ---VAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARD--------ALTTALT---DSDADVRAYARRALAH 896 (897)
T ss_pred ---chHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHH--------HHHHHHh---CCCHHHHHHHHHHHhh
Confidence 455777777777788888888888877521222111 2333333 6777788888877764
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.4e-08 Score=119.00 Aligned_cols=499 Identities=17% Similarity=0.135 Sum_probs=297.1
Q ss_pred CCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccc--ccCChhhHHHHHHHHHHhhccCCchHHhhhhhh--hcc
Q 001796 386 HNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCL--GRDPSISLAAVKLLYELMQDRSGWNVAVCRKLS--QQC 461 (1012)
Q Consensus 386 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL--~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~--~~~ 461 (1012)
.+.++|..|-..+..+.+..+ ..+.|..++ +.|+..+--|+..++.+... ..+.+- .+.
T Consensus 16 pDn~vr~~Ae~~l~~~~~~~~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~-------~w~~l~~e~~~ 78 (1075)
T KOG2171|consen 16 PDNEVRRQAEEALETLAKTEP----------LLPALAHILATSADPQVRQLAAVLLRKLLTK-------HWSRLSAEVQQ 78 (1075)
T ss_pred CCchHHHHHHHHHHHhhcccc----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-------HhhcCCHHHHH
Confidence 466678888888876665332 456677777 34667777777777766542 111111 111
Q ss_pred ChHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhH
Q 001796 462 SGILFLVTLIK-GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLEL 540 (1012)
Q Consensus 462 g~i~~Lv~lL~-~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 540 (1012)
..-..|..... ...+.++.+-+.++..++...-.. .=.+.++.|.+..+++++..|..|..+|+++...-.+...
T Consensus 79 siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 79 SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 22233444433 445567777777887776432111 1134556666666788999999999999998774443322
Q ss_pred hhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCc-hHHHHHH-cCChHHHHHHhhcCCC--ChhHHHHHHHHHHHhh
Q 001796 541 LGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSK-NRELISA-AGGIPQVLELMFSSHV--PSNIIVKCSEILEKLS 616 (1012)
Q Consensus 541 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~-~g~i~~Lv~lL~~~~~--~~~~~~~a~~~L~nLa 616 (1012)
-.=....+.+.+-+.+++..++-.|++++...+..-+ ++...-. ...+|.++..+...-. +......+...|..++
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~ 234 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL 234 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence 1111234445555556555599999999999986543 4433333 2356777777765421 1112244555555555
Q ss_pred ccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcC--cHHHHHHhhcCC--
Q 001796 617 SDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKAN--GVSLILSLLDDT-- 692 (1012)
Q Consensus 617 ~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g--~v~~Lv~ll~~~-- 692 (1012)
....+.+-. ....++.--+.+..+.+-+..+|..|+..|..++.+.+.++|.. -..| .++.++.++...
T Consensus 235 e~~pk~l~~------~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~-~~~~~~lv~~~l~~mte~~~ 307 (1075)
T KOG2171|consen 235 ESEPKLLRP------HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL-ALLGHTLVPVLLAMMTEEED 307 (1075)
T ss_pred hhchHHHHH------HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc-hhhhccHHHHHHHhcCCccc
Confidence 411111100 01334455556666666566789999999999988744333321 1222 255555554321
Q ss_pred C--------------HHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHH
Q 001796 693 D--------------SEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSL 758 (1012)
Q Consensus 693 ~--------------~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~ 758 (1012)
+ ..--..|..++-.++.+-+... +-.-..+.+-.+|.+. +...+.+|+.+|+.++.+..+.
T Consensus 308 D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~----v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~ 382 (1075)
T KOG2171|consen 308 DDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ----VLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDV 382 (1075)
T ss_pred chhhccccccccccccCcHHHHHHHHHHHHhcCChhh----ehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHH
Confidence 1 1133455667777776644322 1123344555566666 7788889999999999887754
Q ss_pred HHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHhhc
Q 001796 759 TMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG-SITAKARAAALIGTLS 837 (1012)
Q Consensus 759 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~vk~~Aa~aL~nLs 837 (1012)
....+ ..+++.++..|++++|++|-.|+.++..++..-.++.++.-.+ -++|.|+..+.+. +++++..|+.|+-|++
T Consensus 383 m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e-~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 383 MIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE-RLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH-hccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 33322 3567888888999999999999999999998766777665544 4778899888864 7899999999999996
Q ss_pred cCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchH-HHHhccCCChHHHHHHHHHHHHHhhccchh
Q 001796 838 TSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPH-LVKLLQGRVHATAYEAIQTLSTLVQEGCQQ 916 (1012)
Q Consensus 838 ~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~-Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~ 916 (1012)
..-+ - . ...=.=.+.+.+ |..++.++...+++.++.|++..+..
T Consensus 461 E~~~-----------------------~--~------~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A---- 505 (1075)
T KOG2171|consen 461 EECD-----------------------K--S------ILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA---- 505 (1075)
T ss_pred HhCc-----------------------H--H------HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH----
Confidence 5221 0 0 000000233442 33345667788999999999998863
Q ss_pred hhhHHhhhc-CCchHHHHHhccCC-hhhHhHHHHHHHHHh
Q 001796 917 RGVNVLHQE-EAIKPTLEILTWGT-DSLKEEALGFLEKVF 954 (1012)
Q Consensus 917 ~~~~~i~~~-~~v~~L~~ll~s~~-~~~~~~a~~aL~~l~ 954 (1012)
.+...+.=. --+|.|..+++..+ .+.|.-....++.+.
T Consensus 506 A~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcis 545 (1075)
T KOG2171|consen 506 AQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLS 545 (1075)
T ss_pred HhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHH
Confidence 222222111 13567777777554 444443333344443
No 33
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.6e-08 Score=119.98 Aligned_cols=429 Identities=20% Similarity=0.208 Sum_probs=269.2
Q ss_pred chHHHHHHhccCCCHHHHHHHHHHHHHHhccc-----cchhhhhhhcCCcccccccccc--CChhhHHHHHHHHHHhhcc
Q 001796 374 ITDIIISILGSSHNKDVKMKILITLKQLVKGH-----ARNKEKVIDYGGWDHIVPCLGR--DPSISLAAVKLLYELMQDR 446 (1012)
Q Consensus 374 ~v~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~-----~~~~~~i~~~g~i~~lv~lL~~--~~~~~~~A~~~L~~ls~~~ 446 (1012)
..+.|..++..+.++++|..|+..+|.+.... .+.|..|-. .|+..+.+ .+.+++.-..++.++.++.
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks-----~lL~~~~~E~~~~vr~k~~dviAeia~~~ 111 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKS-----SLLEIIQSETEPSVRHKLADVIAEIARND 111 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-----HHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence 67888999988889999999999999886532 122222221 12222222 2234444444444444432
Q ss_pred CCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhc----CChHHHH
Q 001796 447 SGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQ----GAESSRI 522 (1012)
Q Consensus 447 ~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~ 522 (1012)
-. . .=++.++.|+.-.+|+++..|+.|..+|.++...- --...+.++.+..++.+ ++..+|.
T Consensus 112 l~------e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~-----~~~~~~~~~~l~~lf~q~~~d~s~~vr~ 177 (1075)
T KOG2171|consen 112 LP------E---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETF-----GNTLQPHLDDLLRLFSQTMTDPSSPVRV 177 (1075)
T ss_pred cc------c---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhh-----ccccchhHHHHHHHHHHhccCCcchHHH
Confidence 10 0 11456777777788999999999999999886321 11234556666666653 4555999
Q ss_pred HHHHHHHhccccc-chhhHhhh-cCChHHHHhhh----cCCChhHHHHHHHHHHHhcCCCch--HHHHHHcCChHHHHHH
Q 001796 523 LMMKALLSMELVD-SNLELLGK-EGIIPPLLGLV----GSGNFQSKELSLSVLVKLSGCSKN--RELISAAGGIPQVLEL 594 (1012)
Q Consensus 523 ~a~~aL~~Ls~~~-~~~~~i~~-~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~l 594 (1012)
.+++++..++... .++...-. ...+|.++..+ ..+|.+....++.+|..+.....- +..+. .+|..-.++
T Consensus 178 ~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~I 255 (1075)
T KOG2171|consen 178 AAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEI 255 (1075)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHH
Confidence 9999999988744 45544444 55677777665 456666777888888888754321 22222 245666677
Q ss_pred hhcCCCChhHHHHHHHHHHHhhcc---CccceecccCCccchhHHHHHHHHHHhccCCC--------------hhhHHHH
Q 001796 595 MFSSHVPSNIIVKCSEILEKLSSD---GIKFLVDEKGNRLELEPIVTNLLTLQQNFNSS--------------YNVRKPA 657 (1012)
Q Consensus 595 L~~~~~~~~~~~~a~~~L~nLa~~---~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~--------------~~~~~~a 657 (1012)
..+..-+..++..|..+|..++.. .++-.. ......+..++.+.....++ ..-...|
T Consensus 256 a~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~------~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A 329 (1075)
T KOG2171|consen 256 AKNKELENSIRHLALEFLVSLSEYAPAMCKKLA------LLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAA 329 (1075)
T ss_pred hhcccccHHHHHHHHHHHHHHHHhhHHHhhhch------hhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHH
Confidence 777777777788888888888762 111110 11233455555554332211 1123456
Q ss_pred HHHHHHhccC-chHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCC
Q 001796 658 LRALFRICKS-EAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDA 736 (1012)
Q Consensus 658 l~aL~~L~~~-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~ 736 (1012)
..+|--++.+ +++.+... .++.+-.++++.+...|.+++-+|..++.+.++.....+ ...++..++.|..+
T Consensus 330 ~~~lDrlA~~L~g~~v~p~-----~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~~Vl~~l~Dp- 401 (1075)
T KOG2171|consen 330 EQALDRLALHLGGKQVLPP-----LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL--PKILPIVLNGLNDP- 401 (1075)
T ss_pred HHHHHHHHhcCChhhehHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH--HHHHHHHHhhcCCC-
Confidence 6666666554 33222222 235566778899999999999999999877544433221 34555555666666
Q ss_pred chHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHH-HH
Q 001796 737 KHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-TMEAKENALSALFRFTDPTNLEAQRNVVERGVYP-LL 814 (1012)
Q Consensus 737 ~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~-~L 814 (1012)
.+.++.+|+.+++.++.+-....+.-...-.+|.|+..+.+. +++++..|+.+|.|++..-....-.-. -.+.+. .|
T Consensus 402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~l 480 (1075)
T KOG2171|consen 402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKKL 480 (1075)
T ss_pred CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHH
Confidence 678999999999999886444344444566788899888765 789999999999999875222211111 112333 34
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 815 VNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 815 v~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
..++.++++.+++.+..+|+..+.
T Consensus 481 ~~L~~~~~~~v~e~vvtaIasvA~ 504 (1075)
T KOG2171|consen 481 LLLLQSSKPYVQEQAVTAIASVAD 504 (1075)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHH
Confidence 446668899999999999999855
No 34
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.25 E-value=3.4e-09 Score=120.07 Aligned_cols=472 Identities=15% Similarity=0.125 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHhhccccchhHhccCchHHHHHHhccC-CCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccccc
Q 001796 349 LEALDQMQDLMRESSINKDWISIGGITDIIISILGSS-HNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR 427 (1012)
Q Consensus 349 ~~~l~~l~~l~~~~~~~r~~i~~~g~v~~Lv~lL~~~-~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~ 427 (1012)
..+.....+++.+.+.++..+-.-|+++.+..+++.. ++.+.+...+..+..++.+..+....+.+.+.++.|+.+|+.
T Consensus 27 vrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~ 106 (678)
T KOG1293|consen 27 VRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSE 106 (678)
T ss_pred HHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcC
Confidence 5566667777777777777777889999999988753 455666777778888888888888889999999999999954
Q ss_pred -C-ChhhHHHHHHHHHHhhccCCchHHhhhhhh--hccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhc
Q 001796 428 -D-PSISLAAVKLLYELMQDRSGWNVAVCRKLS--QQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKS 503 (1012)
Q Consensus 428 -~-~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~--~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~ 503 (1012)
| ....+...+.+.++...+... ...+ .....++.+-.++..+.......-+....+++ ..+.++..+.++
T Consensus 107 sD~~~~le~~l~~lR~Ifet~~~q-----~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~~~hq~Il~Na 180 (678)
T KOG1293|consen 107 SDSLNVLEKTLRCLRTIFETSKYQ-----DKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-STKDHQLILCNA 180 (678)
T ss_pred cchHhHHHHHHHHHHHHHhccccc-----ccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-ccchhhheeccc
Confidence 6 366677777888776654221 1111 11123344333333233333333344444554 455888999999
Q ss_pred CCcHHHHHHHhcCChHHHHHHHHHHH---hcccccc-hh----hHhhhcCChH--HHHhhhcCCChhHHHHHHHHHHHhc
Q 001796 504 GWYKPLIDRIIQGAESSRILMMKALL---SMELVDS-NL----ELLGKEGIIP--PLLGLVGSGNFQSKELSLSVLVKLS 573 (1012)
Q Consensus 504 g~i~~Lv~lL~~~~~~~~~~a~~aL~---~Ls~~~~-~~----~~i~~~g~i~--~Lv~lL~~~~~~~~~~a~~~L~~Ls 573 (1012)
|+.+.+.-++..-....|..|...+. ++..+++ .. ....+.|+.+ ...+++++++...+..++.+|.++.
T Consensus 181 ~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~ 260 (678)
T KOG1293|consen 181 GILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYL 260 (678)
T ss_pred cchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHH
Confidence 99999888887667788888888888 6666443 22 2334567776 5666778888777777888887776
Q ss_pred CCCchHH------HHHHcC----ChHHHHHHhhcCCCChhHHHHHHHHHHHhhc--cCccceecccCCccchhHHHHHHH
Q 001796 574 GCSKNRE------LISAAG----GIPQVLELMFSSHVPSNIIVKCSEILEKLSS--DGIKFLVDEKGNRLELEPIVTNLL 641 (1012)
Q Consensus 574 ~~~~~~~------~i~~~g----~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~--~~~~~~~~~~g~~l~~~~~v~~Ll 641 (1012)
...-+.. ...+-| +.-..+.++..+.... ...++.+...++. ...+. ..+ .....+.+.
T Consensus 261 ~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~--l~~~~~l~c~~a~~~sklq~-~~~------e~~~~~~~~ 331 (678)
T KOG1293|consen 261 RKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLST--LDHTNVLFCILARFASKLQL-PQH------EEATLKTTT 331 (678)
T ss_pred hccccccccccceeeccCchHHHHHHhhheeecCCceee--hhhhhhhHHHHHHHHHhhhh-HHh------hhhhhhhHH
Confidence 4321111 111222 1111122222221110 0111222222221 00000 000 112233333
Q ss_pred HHHhcc----CCChhhHHHHHHHH---HHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcc
Q 001796 642 TLQQNF----NSSYNVRKPALRAL---FRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEG 714 (1012)
Q Consensus 642 ~ll~~~----~~~~~~~~~al~aL---~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~ 714 (1012)
+++... ...++.+.-++.-. ...+.+.+-..++.+.+.-....+.......+...+.+|+-++.+++..-. .
T Consensus 332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~-a 410 (678)
T KOG1293|consen 332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVS-A 410 (678)
T ss_pred HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHH-H
Confidence 333221 11122222221111 111222211134444444333444444445677788888888887765421 1
Q ss_pred hHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 001796 715 VVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFT 794 (1012)
Q Consensus 715 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 794 (1012)
...-+....++.+||+++..+ +..++..+.|+|+||...-.+.+..+++.|+|..+.+++.+.++.++.++.|+|.++.
T Consensus 411 L~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 411 LRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred HHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 111244567899999999666 5678899999999999877778999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 795 DPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 795 ~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
.+.+.+.+......=.-..++.+..+.++.|++.+-..|+||.
T Consensus 490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 9876666555555555677888899999999999999999994
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.22 E-value=1.1e-08 Score=123.56 Aligned_cols=492 Identities=18% Similarity=0.204 Sum_probs=317.1
Q ss_pred CHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccccc-CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHH
Q 001796 387 NKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGIL 465 (1012)
Q Consensus 387 ~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~ 465 (1012)
+...+.+++..|-.+..-+.+.. .+.+.+++++.+ +...++-+--++..+...+++ .. + =++.
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~--~----l~~n 82 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LL--I----LIIN 82 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HH--H----HHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HH--H----HHHH
Confidence 45566666666555433222221 456677888854 456666666666666654421 11 1 1567
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcC
Q 001796 466 FLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEG 545 (1012)
Q Consensus 466 ~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g 545 (1012)
.+..-|+++++..+..|..+|.++. +++.. .-+++.+.+++.++++.+|..|+.++.++...... .+...
T Consensus 83 ~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~-----~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~- 152 (526)
T PF01602_consen 83 SLQKDLNSPNPYIRGLALRTLSNIR--TPEMA-----EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE- 152 (526)
T ss_dssp HHHHHHCSSSHHHHHHHHHHHHHH---SHHHH-----HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-
T ss_pred HHHHhhcCCCHHHHHHHHhhhhhhc--ccchh-----hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-
Confidence 7777888999999999999999986 32222 22578889999999999999999999998763222 12222
Q ss_pred ChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhc--CCCChhHHHHHHHHHHHhhccCccce
Q 001796 546 IIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFS--SHVPSNIIVKCSEILEKLSSDGIKFL 623 (1012)
Q Consensus 546 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~~~a~~~L~nLa~~~~~~~ 623 (1012)
.++.+.++|.+.++.++..|+.++..+ ..++ +... ..++.++..|.. +...+-.+...+.+|..++....
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-~~~~---~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~--- 224 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-DSYK---SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP--- 224 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-HHHT---THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH---
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-chhh---hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh---
Confidence 689999999999999999999999999 1111 1100 445555555542 22232233455555555553110
Q ss_pred ecccCCccch--hHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHH
Q 001796 624 VDEKGNRLEL--EPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAI 701 (1012)
Q Consensus 624 ~~~~g~~l~~--~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~ 701 (1012)
... ...+..+..++++.+ +.+...++.++..+...+. .-..+++.|+.++.++++.++..++
T Consensus 225 -------~~~~~~~~i~~l~~~l~s~~--~~V~~e~~~~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~~~L 288 (526)
T PF01602_consen 225 -------EDADKNRIIEPLLNLLQSSS--PSVVYEAIRLIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRYIAL 288 (526)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred -------hhhhHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhcchH-------HHHhhHHHHHHHhhcccchhehhHH
Confidence 001 346788888887644 5588889999888866543 2234568899999999999999999
Q ss_pred HHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHh-cCCCh
Q 001796 702 NLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINIL-KSGTM 780 (1012)
Q Consensus 702 ~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~ 780 (1012)
..|..++...+. .+ . .....+..+...++..++..++.+|.+++. +.+... +++.|...+ ..+++
T Consensus 289 ~~L~~l~~~~~~----~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~ 354 (526)
T PF01602_consen 289 DSLSQLAQSNPP----AV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDP 354 (526)
T ss_dssp HHHHHHCCHCHH----HH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--H
T ss_pred HHHHHhhcccch----hh-h--hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccch
Confidence 999999876411 11 1 333344566656688899999999999986 222222 477788888 44577
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCC
Q 001796 781 EAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRA 860 (1012)
Q Consensus 781 ~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~ 860 (1012)
..++.++..+..++....+.. .-.++.+++++..+++.+...+...+.++-.+.+
T Consensus 355 ~~~~~~i~~I~~la~~~~~~~------~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~------------------- 409 (526)
T PF01602_consen 355 DFRRELIKAIGDLAEKFPPDA------EWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNP------------------- 409 (526)
T ss_dssp HHHHHHHHHHHHHHHHHGSSH------HHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHST-------------------
T ss_pred hhhhhHHHHHHHHHhccCchH------HHHHHHHHHhhhhccccccchHHHHHHHHhhcCh-------------------
Confidence 899999999998875311111 1157889999998877888888888888733211
Q ss_pred ccccccCCccCCCcchhhhhcCcchHHHHhccC-CChHHHHHHHHHHHHHhhccchhh--hhHHhhhcCCchHHHHHhcc
Q 001796 861 HLCQVHGGICSESTSFCLLKANALPHLVKLLQG-RVHATAYEAIQTLSTLVQEGCQQR--GVNVLHQEEAIKPTLEILTW 937 (1012)
Q Consensus 861 ~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~-~~~~v~~~Al~aL~~L~~~~~~~~--~~~~i~~~~~v~~L~~ll~s 937 (1012)
+ ....++..|++.+.+ .++.+...+++.++..+.. .++ .... -+..+......
T Consensus 410 -------~----------~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~--~~~~~~~~~-----~~~~l~~~~~~ 465 (526)
T PF01602_consen 410 -------E----------LREKILKKLIELLEDISSPEALAAAIWILGEYGEL--IENTESAPD-----ILRSLIENFIE 465 (526)
T ss_dssp -------T----------THHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHH--HTTTTHHHH-----HHHHHHHHHTT
T ss_pred -------h----------hhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCc--ccccccHHH-----HHHHHHHhhcc
Confidence 1 013468888988886 5567777888888887763 222 1111 22344444455
Q ss_pred CChhhHhHHHHHHHHHhchHh---hHhhhcccccchhhhhhhhcc--cCCchHHHHHHHHHHHHHh
Q 001796 938 GTDSLKEEALGFLEKVFMSKE---MVDTYGSSARLLLVPLTSRNV--HEDGSLERKAAKVLSLIER 998 (1012)
Q Consensus 938 ~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~~~l~~L~~~~~--~~~~~~~~~Aa~~L~~L~~ 998 (1012)
.++.+|.....++..++.... .... .+--+.+... +.|.++|++|...+..|+.
T Consensus 466 ~~~~vk~~ilt~~~Kl~~~~~~~~~~~~-------i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 466 ESPEVKLQILTALAKLFKRNPENEVQNE-------ILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCSTTHHHH-------HHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhCCchhhHHH-------HHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 677899999999988885421 1111 1112222333 5789999999999998865
No 36
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.1e-09 Score=109.47 Aligned_cols=83 Identities=28% Similarity=0.292 Sum_probs=76.1
Q ss_pred hccccccCCCCCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHHc
Q 001796 249 YDSRENYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELN 328 (1012)
Q Consensus 249 ~~~~~~~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 328 (1012)
.+......++|+.+||.|++++|+|||+.++|.||+|..|.+++..-....|+|+.+|....++||++|+..|..|...|
T Consensus 199 v~e~rk~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 199 VDEKRKKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred HHHHhccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence 33334677899999999999999999999999999999999999988889999999999999999999999999999998
Q ss_pred ccc
Q 001796 329 YCL 331 (1012)
Q Consensus 329 ~~~ 331 (1012)
.+.
T Consensus 279 ~w~ 281 (284)
T KOG4642|consen 279 EWA 281 (284)
T ss_pred ccc
Confidence 754
No 37
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.11 E-value=1.1e-08 Score=123.43 Aligned_cols=426 Identities=19% Similarity=0.215 Sum_probs=238.3
Q ss_pred CCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccccc-CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChH
Q 001796 386 HNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGI 464 (1012)
Q Consensus 386 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i 464 (1012)
.++.++..|+..+..+.. ++.-.. .++.+.+++.+ ++.+++.|+.++..+.+.+++ .+... .+
T Consensus 91 ~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--------~~~~~-~~ 154 (526)
T PF01602_consen 91 PNPYIRGLALRTLSNIRT--PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--------LVEDE-LI 154 (526)
T ss_dssp SSHHHHHHHHHHHHHH-S--HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--------CHHGG-HH
T ss_pred CCHHHHHHHHhhhhhhcc--cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--------HHHHH-HH
Confidence 567777777777777652 211111 24556666644 456777888777777664322 22222 67
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhc
Q 001796 465 LFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKE 544 (1012)
Q Consensus 465 ~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 544 (1012)
+.+..+|.+.++.++..|+.++..+ ..+++... -.-...++.|.+++...++..+...+..|..++........- .
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~ 230 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--N 230 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--H
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--H
Confidence 8888888877888888888888777 22222211 111223334444445667778888888887776633322200 4
Q ss_pred CChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCcccee
Q 001796 545 GIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLV 624 (1012)
Q Consensus 545 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~ 624 (1012)
..++.+..++.+.++.+.-.|+.++..+...+. .-..++++|+.++.+.+
T Consensus 231 ~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~------------------------- 280 (526)
T PF01602_consen 231 RIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSD------------------------- 280 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSS-------------------------
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhccc-------------------------
Confidence 456777777776667777777777777766544 22335666777776332
Q ss_pred cccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHH
Q 001796 625 DEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLD-DTDSEVREIAINL 703 (1012)
Q Consensus 625 ~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~a~~~ 703 (1012)
+.++..++..|..++..... .+. .....+..+. +++..++..++.+
T Consensus 281 --------------------------~nvr~~~L~~L~~l~~~~~~----~v~---~~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 281 --------------------------PNVRYIALDSLSQLAQSNPP----AVF---NQSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp --------------------------HHHHHHHHHHHHHHCCHCHH----HHG---THHHHHHHHHCSSSHHHHHHHHHH
T ss_pred --------------------------chhehhHHHHHHHhhcccch----hhh---hhhhhhheecCCCChhHHHHHHHH
Confidence 22444444444444443211 111 1111222333 4555566666666
Q ss_pred HHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHH
Q 001796 704 LFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAK 783 (1012)
Q Consensus 704 L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 783 (1012)
|..++.. .+... .++.|...++...+.+.+..++..++.++...+... .-.++.+++++..++..+.
T Consensus 328 L~~l~~~--~n~~~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~-----~~~v~~l~~ll~~~~~~~~ 394 (526)
T PF01602_consen 328 LYKLANE--SNVKE------ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA-----EWYVDTLLKLLEISGDYVS 394 (526)
T ss_dssp HHHH--H--HHHHH------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH-----HHHHHHHHHHHHCTGGGCH
T ss_pred Hhhcccc--cchhh------HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH-----HHHHHHHHHhhhhcccccc
Confidence 6655533 22211 244555555333244455555555555543211111 1137788888887777777
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCcc
Q 001796 784 ENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI-GSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHL 862 (1012)
Q Consensus 784 ~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~ 862 (1012)
..++..+.++... .++.+.. .+..|++.+.+ .++.++..++|.++..+...+
T Consensus 395 ~~~~~~i~~ll~~-~~~~~~~-----~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~--------------------- 447 (526)
T PF01602_consen 395 NEIINVIRDLLSN-NPELREK-----ILKKLIELLEDISSPEALAAAIWILGEYGELIE--------------------- 447 (526)
T ss_dssp CHHHHHHHHHHHH-STTTHHH-----HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT---------------------
T ss_pred chHHHHHHHHhhc-ChhhhHH-----HHHHHHHHHHHhhHHHHHHHHHhhhcccCCccc---------------------
Confidence 7777777777554 3443332 37788888876 578899999999998833111
Q ss_pred ccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc--cCCh
Q 001796 863 CQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT--WGTD 940 (1012)
Q Consensus 863 ~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~--s~~~ 940 (1012)
+. . .-...+..+++....++..++..++.++..+.......+....+ +..+..+.. +.++
T Consensus 448 -----~~------~--~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i-----~~~~~~~~~~~s~~~ 509 (526)
T PF01602_consen 448 -----NT------E--SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEI-----LQFLLSLATEDSSDP 509 (526)
T ss_dssp -----TT------T--HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHH-----HHHHHCHHHHS-SSH
T ss_pred -----cc------c--cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHH-----HHHHHHHhccCCCCH
Confidence 00 0 01234455555556667788889999999988631000111222 234455566 7899
Q ss_pred hhHhHHHHHHHH
Q 001796 941 SLKEEALGFLEK 952 (1012)
Q Consensus 941 ~~~~~a~~aL~~ 952 (1012)
++|.+|...+.-
T Consensus 510 evr~Ra~~y~~l 521 (526)
T PF01602_consen 510 EVRDRAREYLRL 521 (526)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999886643
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.02 E-value=3.1e-09 Score=100.39 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=106.8
Q ss_pred ccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccccc-chh
Q 001796 460 QCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVD-SNL 538 (1012)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~-~~~ 538 (1012)
+.|+++.++.+++++++..+..|+.+|.+++..++.....+.+.|+++.++++|.++++.++..++++|++++.+. ..+
T Consensus 5 ~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred HcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHH
Confidence 4699999999999999999999999999999888899999999999999999999999999999999999999966 556
Q ss_pred hHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 539 ELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 539 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
..+.+.|+++.|++++.+++.++++.++++|.+|+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 777889999999999999999999999999999873
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.01 E-value=5.1e-09 Score=98.88 Aligned_cols=117 Identities=30% Similarity=0.357 Sum_probs=106.8
Q ss_pred hhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCC
Q 001796 719 LLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTN 798 (1012)
Q Consensus 719 l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~ 798 (1012)
+.+.|+++.|+.++.++ +...+..++.+|++++.+.+.....+.+.|+++.+++++.++++.+++.++++|.+++.. .
T Consensus 3 ~~~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~ 80 (120)
T cd00020 3 VIQAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-P 80 (120)
T ss_pred HHHcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-c
Confidence 45789999999999877 578999999999999998888889999999999999999999999999999999999986 4
Q ss_pred HHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 799 LEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 799 ~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
+.....+.+.|+++.|++++.+.+..++..|+++|.+|+
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 566777888999999999999999999999999999983
No 40
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.01 E-value=2.3e-10 Score=84.72 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=31.1
Q ss_pred cccccccCCCceecCCCccccHHHHHHHHhcCC---CCCCCC
Q 001796 264 CRITGTVMMDPVSLYTGTTCERAAIEAWLDRRE---KTDPET 302 (1012)
Q Consensus 264 cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~---~~cp~~ 302 (1012)
||||+++|+|||+++|||+||++||++|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998643 368875
No 41
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.95 E-value=4.2e-10 Score=110.54 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=55.3
Q ss_pred ccCCCCCceecccccccCCCceecCCCccccHHHHHHHHhc---------------CCCCCCCCCcccCCCCCccCHHHH
Q 001796 254 NYIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR---------------REKTDPETGVVLEDTSLRSNSPLR 318 (1012)
Q Consensus 254 ~~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~---------------~~~~cp~~~~~l~~~~l~~n~~l~ 318 (1012)
...+..++|.||||++.++|||++.|||.||+.||.+|+.. +...||.|+.++....++|.+.-.
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg 90 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG 90 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence 34455679999999999999999999999999999999852 235799999999999999986433
No 42
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.91 E-value=5.3e-07 Score=101.77 Aligned_cols=351 Identities=12% Similarity=0.149 Sum_probs=219.4
Q ss_pred ChHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHhh-----cCCcHHHHHHHhcCChHHHHHHHHHHHhccccc
Q 001796 462 SGILFLVTLIKG-PVRESAECAEKILQQLFDVDEENFCRAAK-----SGWYKPLIDRIIQGAESSRILMMKALLSMELVD 535 (1012)
Q Consensus 462 g~i~~Lv~lL~~-~~~~~~~~A~~~L~~La~~~~~~~~~i~~-----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 535 (1012)
..+..++.+|+. ...++..+....+..|...++.....+.+ .....+++.+|..++.-+...+...|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 445556666653 34566777777776666555544444433 467788999998888888999999999886632
Q ss_pred chh-hHhhhcCChHHHHhhhcCC-ChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHH
Q 001796 536 SNL-ELLGKEGIIPPLLGLVGSG-NFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILE 613 (1012)
Q Consensus 536 ~~~-~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~ 613 (1012)
... ......-....|...|.+. +...+..++.+|..|...++.|..+.+.++++.|+.+|+.....
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~------------ 200 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLG------------ 200 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhcccc------------
Confidence 221 1110011233455556544 36678889999999999999999999999999999999765322
Q ss_pred HhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCC-
Q 001796 614 KLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDT- 692 (1012)
Q Consensus 614 nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~- 692 (1012)
...+.+++-++|-|+..++. ...+...+.|+.+++++...
T Consensus 201 -------------------------------------~Ql~Y~~ll~lWlLSF~~~~--~~~~~~~~~i~~l~~i~k~s~ 241 (429)
T cd00256 201 -------------------------------------FQLQYQSIFCIWLLTFNPHA--AEVLKRLSLIQDLSDILKEST 241 (429)
T ss_pred -------------------------------------HHHHHHHHHHHHHHhccHHH--HHhhccccHHHHHHHHHHhhh
Confidence 22678888888988877653 35566778899999998875
Q ss_pred CHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHH
Q 001796 693 DSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAII 772 (1012)
Q Consensus 693 ~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv 772 (1012)
.+++.+-++.+|+|+.....+... .......+++.|.++.+-
T Consensus 242 KEKvvRv~l~~l~Nll~~~~~~~~--------------------------------------~~~~~~~mv~~~l~~~l~ 283 (429)
T cd00256 242 KEKVIRIVLAIFRNLISKRVDREV--------------------------------------KKTAALQMVQCKVLKTLQ 283 (429)
T ss_pred hHHHHHHHHHHHHHHhhcccccch--------------------------------------hhhHHHHHHHcChHHHHH
Confidence 678999999999998654211000 001122333444333333
Q ss_pred HHhcC--CChhHHHHHH-------HHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCC
Q 001796 773 NILKS--GTMEAKENAL-------SALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKF 843 (1012)
Q Consensus 773 ~lL~~--~~~~~~~~a~-------~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l 843 (1012)
.+... +++++.+-.- .-+..++.- .++...+ .+| +|..
T Consensus 284 ~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsf--D~Y~~El-------------~sg-------------~L~W----- 330 (429)
T cd00256 284 SLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSF--DEYKSEL-------------RSG-------------RLHW----- 330 (429)
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHH-------------hcC-------------CccC-----
Confidence 33222 1333222111 111111111 1111111 111 1111
Q ss_pred ccCCCCCcccccCCCCCccccccCCccCCCcchhhhh--cCcchHHHHhcc-CCChHHHHHHHHHHHHHhhccchhhhhH
Q 001796 844 TDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLK--ANALPHLVKLLQ-GRVHATAYEAIQTLSTLVQEGCQQRGVN 920 (1012)
Q Consensus 844 ~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~--~gai~~Lv~lL~-~~~~~v~~~Al~aL~~L~~~~~~~~~~~ 920 (1012)
+++.++..||.- |...+-+ ...+..|+++|. +.++.+...|+.=++.++.. +|.|+.
T Consensus 331 Sp~H~se~FW~E------------------N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~--~P~gr~ 390 (429)
T cd00256 331 SPVHKSEKFWRE------------------NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRH--YPRGKD 390 (429)
T ss_pred CCCCCCchHHHH------------------HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHH--CccHHH
Confidence 122222333321 0111211 245688999995 45666777788889999986 799999
Q ss_pred HhhhcCCchHHHHHhccCChhhHhHHHHHHHHHh
Q 001796 921 VLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVF 954 (1012)
Q Consensus 921 ~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~ 954 (1012)
.+.+.||=..++++|.++|+++|.+|.-++..+.
T Consensus 391 i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 391 VVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988775
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=98.88 E-value=2.3e-05 Score=95.39 Aligned_cols=366 Identities=13% Similarity=0.080 Sum_probs=231.9
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHh
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
...+.++.++.+.+.+.+.-..-.|.+.+..+++.-.. ++..+.+=+.+.++.+|-.|+++|+++-... +
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----V 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----H
Confidence 45677788888888888888888888887655443222 2455666777788899999999888764411 1
Q ss_pred hhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCcc
Q 001796 542 GKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIK 621 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~ 621 (1012)
-.-.++++.+.+.+.++-+++.|+.++.++-.... ..+.+.|.++.|.++|.+.+.. +...|+.+|..+...+..
T Consensus 138 -~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~--Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 138 -LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPV--VASNAAAIVCEVNDYGSE 212 (746)
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCcc--HHHHHHHHHHHHHHhCch
Confidence 11235667778888889999999999999865322 3345667888899988765444 558888888888752211
Q ss_pred ceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHH
Q 001796 622 FLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAI 701 (1012)
Q Consensus 622 ~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~ 701 (1012)
. .......+..|+..+...+ +..|-..+.+|....-..+. . ....+..+...+++.++.|.-.|+
T Consensus 213 ~-------l~l~~~~~~~Ll~~L~e~~--EW~Qi~IL~lL~~y~P~~~~---e---~~~il~~l~~~Lq~~N~AVVl~Ai 277 (746)
T PTZ00429 213 K-------IESSNEWVNRLVYHLPECN--EWGQLYILELLAAQRPSDKE---S---AETLLTRVLPRMSHQNPAVVMGAI 277 (746)
T ss_pred h-------hHHHHHHHHHHHHHhhcCC--hHHHHHHHHHHHhcCCCCcH---H---HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 0 0112445666777665533 55667666666442211111 1 123467788888899999999999
Q ss_pred HHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChh
Q 001796 702 NLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTME 781 (1012)
Q Consensus 702 ~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~ 781 (1012)
+++..++...+....... -....++|+.+++ ++.+++..+...|.-+....+. +.... +..+.- .-++...
T Consensus 278 k~il~l~~~~~~~~~~~~-~~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~~P~----lf~~~-~~~Ff~-~~~Dp~y 348 (746)
T PTZ00429 278 KVVANLASRCSQELIERC-TVRVNTALLTLSR--RDAETQYIVCKNIHALLVIFPN----LLRTN-LDSFYV-RYSDPPF 348 (746)
T ss_pred HHHHHhcCcCCHHHHHHH-HHHHHHHHHHhhC--CCccHHHHHHHHHHHHHHHCHH----HHHHH-HHhhhc-ccCCcHH
Confidence 999988765322221111 1123366777743 2567888887766655554442 22211 222221 2234556
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCc
Q 001796 782 AKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAH 861 (1012)
Q Consensus 782 ~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~ 861 (1012)
++...+.+|..++...+.+ . ++.-|.....+.+.+.+..+..+++.++..-+
T Consensus 349 IK~~KLeIL~~Lane~Nv~---~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~-------------------- 400 (746)
T PTZ00429 349 VKLEKLRLLLKLVTPSVAP---E-----ILKELAEYASGVDMVFVVEVVRAIASLAIKVD-------------------- 400 (746)
T ss_pred HHHHHHHHHHHHcCcccHH---H-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh--------------------
Confidence 9999999999998764322 2 34556666667788999999999999854211
Q ss_pred cccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhh
Q 001796 862 LCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQ 911 (1012)
Q Consensus 862 ~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~ 911 (1012)
-....++..|++++.... .++.+++.++.++..
T Consensus 401 ----------------~~a~~cV~~Ll~ll~~~~-~~v~e~i~vik~Ilr 433 (746)
T PTZ00429 401 ----------------SVAPDCANLLLQIVDRRP-ELLPQVVTAAKDIVR 433 (746)
T ss_pred ----------------HHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHH
Confidence 011456677777776533 344566777777764
No 44
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1e-08 Score=114.26 Aligned_cols=133 Identities=21% Similarity=0.248 Sum_probs=96.3
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhhcc
Q 001796 172 DMLEEIARAVGVPVEPSEISKELASFRREKEEAANRKERAEVLFLDQVIELLSRADAARDYEEVKKQYFQRLQIIERYDS 251 (1012)
Q Consensus 172 ~~l~~~~~~l~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~e~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (1012)
++++.+|. +.....+++..-.-.+-... .-.-...++.+..|+++++..+-.+..|
T Consensus 789 ~FveaVA~------D~rsf~~~~F~rA~~I~~~k---~L~s~~~IE~l~~f~nr~E~~r~~ea~E--------------- 844 (929)
T COG5113 789 KFVEAVAS------DKRSFDIDFFRRALRICENK---YLISESQIEELRSFINRLEKVRVIEAVE--------------- 844 (929)
T ss_pred HHHHHHHc------ccccccHHHHHHHHHHHhcc---ccCCHHHHHHHHHHHHHHHHHHHHHhhh---------------
Confidence 56666664 44445555543333332211 1112235777888888876543222111
Q ss_pred ccccCCCCCceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHHcc
Q 001796 252 RENYIQPLNAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNY 329 (1012)
Q Consensus 252 ~~~~~~~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 329 (1012)
++++.++|++|..|++..+|+|||++ .||.|.||+.|..++-+ ..|.|..|.||.-.+++||-.||+.|-.|....+
T Consensus 845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 22477899999999999999999999 67899999999999987 6799999999999999999999999999876654
No 45
>PTZ00429 beta-adaptin; Provisional
Probab=98.85 E-value=5.2e-05 Score=92.38 Aligned_cols=502 Identities=13% Similarity=0.081 Sum_probs=295.0
Q ss_pred HHHHHhccCCCHHHHHHHHHH-HHHHhccccchhhhhhhcCCcccccccccc-CChhhHHHHHHHHHHhhccCCchHHhh
Q 001796 377 IIISILGSSHNKDVKMKILIT-LKQLVKGHARNKEKVIDYGGWDHIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVC 454 (1012)
Q Consensus 377 ~Lv~lL~~~~~~~~~~~a~~~-L~~La~~~~~~~~~i~~~g~i~~lv~lL~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~ 454 (1012)
-|-..|.+ .+...+..+++. +..++.|. +. ....+.+++++.+ |...++-.--.|.+++...++ .
T Consensus 36 ELr~~L~s-~~~~~kk~alKkvIa~mt~G~-Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe----l- 102 (746)
T PTZ00429 36 ELQNDLNG-TDSYRKKAAVKRIIANMTMGR-DV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE----K- 102 (746)
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHHHCCC-Cc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH----H-
Confidence 34445544 355566666654 33444442 21 1234556666654 446666666666677654321 1
Q ss_pred hhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 001796 455 RKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELV 534 (1012)
Q Consensus 455 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 534 (1012)
.+ =++..+.+-++++++.+|-.|+.+|.++- .++.. .-.++++.+.|.+.++-+|+.|+.++.++-..
T Consensus 103 -al----LaINtl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~-----e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~ 170 (746)
T PTZ00429 103 -AL----LAVNTFLQDTTNSSPVVRALAVRTMMCIR--VSSVL-----EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD 170 (746)
T ss_pred -HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--cHHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence 11 25677888888999999999999888773 11111 12345667777788999999999999998653
Q ss_pred cchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001796 535 DSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEK 614 (1012)
Q Consensus 535 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~n 614 (1012)
.. ..+.+.|.++.|.++|.+.|+.++.+|+.+|..+......+- -...+.+..|+..+.+.++..+ +.+|.-
T Consensus 171 ~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Q-----i~IL~l 242 (746)
T PTZ00429 171 DM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQ-----LYILEL 242 (746)
T ss_pred Cc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHH-----HHHHHH
Confidence 33 344567899999999999999999999999999986433221 1223345556666655443322 234444
Q ss_pred hhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCch-HHHHHHHHhcCcHHHHHHhhcCCC
Q 001796 615 LSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEA-ELVKIAVVKANGVSLILSLLDDTD 693 (1012)
Q Consensus 615 La~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~-~~~~~~i~~~g~v~~Lv~ll~~~~ 693 (1012)
|+..... +. -....++..+...+++.+ +.+.-.|+++++++....+ ......+.+.+ ..++.++ +.+
T Consensus 243 L~~y~P~----~~---~e~~~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~--~pLv~L~-ss~ 310 (746)
T PTZ00429 243 LAAQRPS----DK---ESAETLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQELIERCTVRVN--TALLTLS-RRD 310 (746)
T ss_pred HHhcCCC----Cc---HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH--HHHHHhh-CCC
Confidence 4431100 00 112457777888888765 4588999999999976532 21222221111 4556654 567
Q ss_pred HHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHh--hcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHH
Q 001796 694 SEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGF--LENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAI 771 (1012)
Q Consensus 694 ~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~l--L~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~L 771 (1012)
++++-.++..+..+....+.- + ..-++. ....++..++...+.+|..|+.. .+ ...+ +.-|
T Consensus 311 ~eiqyvaLr~I~~i~~~~P~l----f------~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-~N-v~~I-----L~EL 373 (746)
T PTZ00429 311 AETQYIVCKNIHALLVIFPNL----L------RTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-SV-APEI-----LKEL 373 (746)
T ss_pred ccHHHHHHHHHHHHHHHCHHH----H------HHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-cc-HHHH-----HHHH
Confidence 789998888777776553321 1 111222 23444667888899999999863 32 2222 3556
Q ss_pred HHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCc
Q 001796 772 INILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAG 851 (1012)
Q Consensus 772 v~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~ 851 (1012)
.+...+.+.+.++.++.++.+++... +.. ....+..|++++..+.. ....+...+.++-..-+
T Consensus 374 ~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~-----a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP---------- 436 (746)
T PTZ00429 374 AEYASGVDMVFVVEVVRAIASLAIKV-DSV-----APDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYP---------- 436 (746)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhC-hHH-----HHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCc----------
Confidence 66677778889999999999998642 221 22368889999976544 44567788888722111
Q ss_pred ccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhc--cC-CChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCc
Q 001796 852 CWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLL--QG-RVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAI 928 (1012)
Q Consensus 852 ~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL--~~-~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v 928 (1012)
+ ...+..|+..+ .. .+++.+...++.|+..+.. .+. .. ..+
T Consensus 437 ----------------~------------~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~--I~~-a~-----~~L 480 (746)
T PTZ00429 437 ----------------E------------LLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF--IEN-GK-----DII 480 (746)
T ss_pred ----------------c------------HHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhh--Hhh-HH-----HHH
Confidence 0 01344455432 11 3445555567777776642 111 11 112
Q ss_pred hHHHHHhccCChhhHhHHHHHHHHHhch-H-hhHhhhcccccchhhhhhhhcccCCchHHHHHHHHHHHHHhc
Q 001796 929 KPTLEILTWGTDSLKEEALGFLEKVFMS-K-EMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERY 999 (1012)
Q Consensus 929 ~~L~~ll~s~~~~~~~~a~~aL~~l~~~-~-~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~ 999 (1012)
..+++-+...++.+|.....+..+++.. + +....++ -.|...+. .+.|+++|.+|..-.+.|+..
T Consensus 481 ~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~----~vL~~~t~--~~~d~DVRDRA~~Y~rLLs~~ 547 (746)
T PTZ00429 481 QRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLN----RVLETVTT--HSDDPDVRDRAFAYWRLLSKG 547 (746)
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHH----HHHHHHHh--cCCChhHHHHHHHHHHHHcCC
Confidence 2222222345677888777777777754 2 2211110 01112222 146678888888877777653
No 46
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=3.8e-09 Score=117.02 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=63.1
Q ss_pred CCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHHc
Q 001796 259 LNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELN 328 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 328 (1012)
-..|.||||+++|.+||+++|||+||+.||..|+.. ...||.|+.++....+.+|+.|.++|+.|....
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence 368999999999999999999999999999999976 458999999998888999999999999997654
No 47
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.81 E-value=2.7e-07 Score=104.11 Aligned_cols=353 Identities=14% Similarity=0.096 Sum_probs=212.3
Q ss_pred cccccccc--CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhH
Q 001796 420 HIVPCLGR--DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENF 497 (1012)
Q Consensus 420 ~lv~lL~~--~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~ 497 (1012)
.++.+|+. ........+..+..+...+++......+...........++.+|+.+|.-+...|..+|..+......+.
T Consensus 57 ~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~ 136 (429)
T cd00256 57 TFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKM 136 (429)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcccc
Confidence 34445533 2345566666777776654321111111111124556777789998888899999999998875443321
Q ss_pred HHHhhcCCcHHHHHHHhcC-ChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCC--ChhHHHHHHHHHHHhcC
Q 001796 498 CRAAKSGWYKPLIDRIIQG-AESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSG--NFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 498 ~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~ 574 (1012)
......-.++.|...|+++ +...+.-++.+|..|...++.|..+.+.++++.|+.+|+.. +.+++..++-+++-||.
T Consensus 137 ~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 137 EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 1111111333455555544 46677788899999999999999999999999999999753 45789999999999999
Q ss_pred CCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhH
Q 001796 575 CSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVR 654 (1012)
Q Consensus 575 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~ 654 (1012)
.++....+...+.|+.|+++++... ...+.+.+..+|.||...+..... .+ .... .+ +.
T Consensus 217 ~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~--~~------~~~~---~m---------v~ 275 (429)
T cd00256 217 NPHAAEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREV--KK------TAAL---QM---------VQ 275 (429)
T ss_pred cHHHHHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccch--hh------hHHH---HH---------HH
Confidence 9888788888899999999999864 445668888888888852110000 00 0000 11 11
Q ss_pred HHHHHHHHHhcc--CchHHHHHHHHhc-CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc-CCCcchH----Hhhhc--CCC
Q 001796 655 KPALRALFRICK--SEAELVKIAVVKA-NGVSLILSLLDDTDSEVREIAINLLFLFSH-HEPEGVV----EYLLK--PKR 724 (1012)
Q Consensus 655 ~~al~aL~~L~~--~~~~~~~~~i~~~-g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~-~~~~~~~----~~l~~--~~~ 724 (1012)
......+-+|.. .+++.+.+.+... ..+..-+.-+.+-+....+--.+.|.. |. |..+... ..+-+ ...
T Consensus 276 ~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W-Sp~H~se~FW~EN~~kf~~~~~~l 354 (429)
T cd00256 276 CKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW-SPVHKSEKFWRENADRLNEKNYEL 354 (429)
T ss_pred cChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC-CCCCCCchHHHHHHHHHHhcchHH
Confidence 122233344432 2232222222110 001111111111111111111111111 11 1011110 01111 245
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 001796 725 LEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFT 794 (1012)
Q Consensus 725 i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 794 (1012)
+..|+++|..++++.+...||-=|+.++...|..+..+-+.|+=..+.+++.+++++++.+|+.++..|.
T Consensus 355 lk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 355 LKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7889999976667777777888888888888877777778999999999999999999999999987764
No 48
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.3e-06 Score=101.46 Aligned_cols=258 Identities=19% Similarity=0.143 Sum_probs=180.4
Q ss_pred hHHHHHHHhcCC-CHHHHHHHHHHHH-HhhcCChhhHHHHhhcCCcHHHHHHHhcC-ChHHHHHHHHHHHhccc-ccchh
Q 001796 463 GILFLVTLIKGP-VRESAECAEKILQ-QLFDVDEENFCRAAKSGWYKPLIDRIIQG-AESSRILMMKALLSMEL-VDSNL 538 (1012)
Q Consensus 463 ~i~~Lv~lL~~~-~~~~~~~A~~~L~-~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~-~~~~~ 538 (1012)
-+..|+.=|+.. |+..+..|+.-|+ +|...+++....+--.-++|.|+.+|+.+ +.++...|+++|++|+. .+...
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 344444545544 6667777766555 55556766666666677899999999865 78899999999999988 78889
Q ss_pred hHhhhcCChHHHHhh-hcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 001796 539 ELLGKEGIIPPLLGL-VGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS 617 (1012)
Q Consensus 539 ~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~ 617 (1012)
..+++.++||.|+.= +.-...++.+.++.+|..|+.. .-.++.++|++...+..|.--+..
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~---------------- 309 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIH---------------- 309 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHH----------------
Confidence 999999999999874 4445678999999999999974 347889999999988887654333
Q ss_pred cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccC--chHHHHHHHHhcCcHHHHHHhhcCCCHH
Q 001796 618 DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKS--EAELVKIAVVKANGVSLILSLLDDTDSE 695 (1012)
Q Consensus 618 ~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~--~~~~~~~~i~~~g~v~~Lv~ll~~~~~~ 695 (1012)
+|+.|+.+-.|+|+. ++. -..++ .++|.|-.+|+..+.+
T Consensus 310 -----------------------------------aQR~AlaiaaN~Cksi~sd~--f~~v~--ealPlL~~lLs~~D~k 350 (1051)
T KOG0168|consen 310 -----------------------------------AQRVALAIAANCCKSIRSDE--FHFVM--EALPLLTPLLSYQDKK 350 (1051)
T ss_pred -----------------------------------HHHHHHHHHHHHHhcCCCcc--chHHH--HHHHHHHHHHhhccch
Confidence 344444444444442 221 12222 2457777777777777
Q ss_pred HHHHHHHHHHHhccC--CCcchHHhhhcCCChHHHHHhhcCCCc---hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHH
Q 001796 696 VREIAINLLFLFSHH--EPEGVVEYLLKPKRLEALVGFLENDAK---HDVQMAAAGLLANLPKSELSLTMKLIELDGLNA 770 (1012)
Q Consensus 696 v~~~a~~~L~~ls~~--~~~~~~~~l~~~~~i~~Lv~lL~~~~~---~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~ 770 (1012)
..+.++-++..++.. ...+..+.+...+.|....++|..... ..+.......|.-++.+.+-....+.+.++...
T Consensus 351 ~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~ 430 (1051)
T KOG0168|consen 351 PIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADT 430 (1051)
T ss_pred hHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHH
Confidence 666666666655422 234555667778888888887754311 224445667778888887887888888888888
Q ss_pred HHHHhcC
Q 001796 771 IINILKS 777 (1012)
Q Consensus 771 Lv~lL~~ 777 (1012)
|..+|..
T Consensus 431 L~~il~g 437 (1051)
T KOG0168|consen 431 LKRILQG 437 (1051)
T ss_pred HHHHHhc
Confidence 8887753
No 49
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3e-08 Score=118.63 Aligned_cols=75 Identities=27% Similarity=0.333 Sum_probs=69.4
Q ss_pred ccCCCCCceecccccccCCCceecC-CCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHHcc
Q 001796 254 NYIQPLNAFKCRITGTVMMDPVSLY-TGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNY 329 (1012)
Q Consensus 254 ~~~~~~~~~~cpi~~~~m~dPv~~~-~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 329 (1012)
...++|++|..||+..+|+|||+++ +|+|.||+.|++++.+ .++.|+||++|....++||..||..|+.|..+.+
T Consensus 863 ~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 863 ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 3456999999999999999999997 9999999999999987 7899999999999999999999999999987654
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.1e-07 Score=104.12 Aligned_cols=247 Identities=17% Similarity=0.204 Sum_probs=178.6
Q ss_pred ChHHHHHHHHHHHhccc--ccchhhHhhhcCChHHHHhhhcCC-ChhHHHHHHHHHHHhcC-CCchHHHHHHcCChHHHH
Q 001796 517 AESSRILMMKALLSMEL--VDSNLELLGKEGIIPPLLGLVGSG-NFQSKELSLSVLVKLSG-CSKNRELISAAGGIPQVL 592 (1012)
Q Consensus 517 ~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv 592 (1012)
++..+..++.-|+.+.. +++.-..+--.-.+|.|+.+|+.. +.++...|+++|.+|+. .|.....+++.++||.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 44555666666664333 333333343466899999999875 58999999999999995 688889999999999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHH
Q 001796 593 ELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELV 672 (1012)
Q Consensus 593 ~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~ 672 (1012)
+-|..-.. .++-++++.+|-.|+...+
T Consensus 261 ~kL~~Iey--------------------------------------------------iDvAEQ~LqALE~iSR~H~--- 287 (1051)
T KOG0168|consen 261 EKLLTIEY--------------------------------------------------IDVAEQSLQALEKISRRHP--- 287 (1051)
T ss_pred Hhhhhhhh--------------------------------------------------hHHHHHHHHHHHHHHhhcc---
Confidence 87754321 2355667777777766443
Q ss_pred HHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccC
Q 001796 673 KIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLP 752 (1012)
Q Consensus 673 ~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~ 752 (1012)
.++.++|++...+.+++--+..+|+.|+.+..|.......+-...+ ..++|.|..+|+.. +....+.++.++..++
T Consensus 288 -~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~-D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 288 -KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQ-DKKPIESVCICLTRIA 363 (1051)
T ss_pred -HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhc-cchhHHHHHHHHHHHH
Confidence 6788999999999888777778999999998887655433332222 46799999999887 4445555555555554
Q ss_pred C---CCHHHHHHHHhhccHHHHHHHhcCC----ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC
Q 001796 753 K---SELSLTMKLIELDGLNAIINILKSG----TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG 821 (1012)
Q Consensus 753 ~---~~~~~~~~l~~~g~i~~Lv~lL~~~----~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 821 (1012)
. +.++.-+.+...|.|.....|+.-. +..+.-..++.|.-++.+ .+.....+.+.++...|-.+|...
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~-~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSG-SPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccC-ChHHHHHHHHhhHHHHHHHHHhcc
Confidence 3 3566678888999999999988644 234566778888888775 577778888888888888888743
No 51
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.74 E-value=4e-09 Score=83.47 Aligned_cols=44 Identities=36% Similarity=0.510 Sum_probs=32.0
Q ss_pred CceecccccccCCCceec-CCCccccHHHHHHHHhc-CCCCCCCCC
Q 001796 260 NAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDR-REKTDPETG 303 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~-~~~~cp~~~ 303 (1012)
-.|.||||+.+|+|||.- .|||+|||++|.+|+.. +...||++|
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 479999999999999996 99999999999999943 445799965
No 52
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=6e-05 Score=87.48 Aligned_cols=399 Identities=15% Similarity=0.153 Sum_probs=257.4
Q ss_pred hccCCCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccccc---CChhhHHHHHHHHHHhhccCCc------hH-
Q 001796 382 LGSSHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR---DPSISLAAVKLLYELMQDRSGW------NV- 451 (1012)
Q Consensus 382 L~~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~---~~~~~~~A~~~L~~ls~~~~~~------~~- 451 (1012)
..++.-.+.|+.|+..|..+++ ..|..++ +.|+++++..|.. |++....++..++.+..+++.. ..
T Consensus 31 vessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qs 106 (970)
T KOG0946|consen 31 VESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQS 106 (970)
T ss_pred HhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhh
Confidence 3345567889999999998876 4555554 4568999999954 4567789999999998877421 11
Q ss_pred -----HhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCh-hh-HHHHhhcCCcHHHHHHHhcCChHHHHHH
Q 001796 452 -----AVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDE-EN-FCRAAKSGWYKPLIDRIIQGAESSRILM 524 (1012)
Q Consensus 452 -----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~-~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a 524 (1012)
-+.+.++...+.|..|+..+...|-.+|..|+..|.++-+.-+ +. ...+..+-+|..|+.+|.+..+.+|-.+
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 1235556789999999999999999999999999998875433 33 4455778999999999998888899999
Q ss_pred HHHHHhcccccchhhHhhh-cCChHHHHhhhcCCC----hhHHHHHHHHHHHhcC-CCchHHHHHHcCChHHHHHHhhcC
Q 001796 525 MKALLSMELVDSNLELLGK-EGIIPPLLGLVGSGN----FQSKELSLSVLVKLSG-CSKNRELISAAGGIPQVLELMFSS 598 (1012)
Q Consensus 525 ~~aL~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~----~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~ 598 (1012)
.-.|..|..+..+...++. .++...|..++.... .-+.+.|+..|.||-. +..|+..+.+.+-||.|.++|.-.
T Consensus 187 iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f 266 (970)
T KOG0946|consen 187 ILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVF 266 (970)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcc
Confidence 9999999998888888877 899999999996422 3588999999999985 567888899999999999888643
Q ss_pred C--------CChhH---HHHHHHHHHHhhccCccceecc-cCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhcc
Q 001796 599 H--------VPSNI---IVKCSEILEKLSSDGIKFLVDE-KGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICK 666 (1012)
Q Consensus 599 ~--------~~~~~---~~~a~~~L~nLa~~~~~~~~~~-~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~ 666 (1012)
. ...+. ...++.++..|...+....+.+ ....+.....+..|..++-+..-..+++..+.-++.++..
T Consensus 267 ~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVR 346 (970)
T KOG0946|consen 267 EFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVR 346 (970)
T ss_pred cccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence 1 11111 2345666666666433322222 2233445567777777776654455678888877777766
Q ss_pred CchHHHHHHHHhcCc------HH----HHHHhhcCC-CHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCC
Q 001796 667 SEAELVKIAVVKANG------VS----LILSLLDDT-DSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEND 735 (1012)
Q Consensus 667 ~~~~~~~~~i~~~g~------v~----~Lv~ll~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~ 735 (1012)
.... ....+.+..+ .+ .++.+.... ....|-++..++...-.++.+.... ++..++..-.+.
T Consensus 347 gn~~-nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~------~l~tllp~~~ns 419 (970)
T KOG0946|consen 347 GNAR-NQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK------FLKTLLPSSTNS 419 (970)
T ss_pred hchH-HHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH------HHHHHhhhhccc
Confidence 4432 2233332211 12 233333333 3457777777888766664444433 355555544333
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCC
Q 001796 736 AKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTN 798 (1012)
Q Consensus 736 ~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~ 798 (1012)
.+..+.....-+..+ ...++ ...++. -..|..++. .+...++..+++..+-..+.+
T Consensus 420 t~Nsl~ag~l~~~~l-~s~d~-~~nwFt----~v~lmh~l~-dn~~~kEeLlrV~l~~~~gn~ 475 (970)
T KOG0946|consen 420 TSNSLSAGQLLLVGL-SSTDS-LDNWFT----AVILMHLLQ-DNDQLKEELLRVPLAVDTGND 475 (970)
T ss_pred cccchhhhhHHHHhh-ccchH-HHHHHH----HHHHHHHHH-HhHHHHHHHHhhhhcccCCCC
Confidence 222222222222222 22122 122221 122333333 345567777777666665533
No 53
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=3.2e-06 Score=95.90 Aligned_cols=476 Identities=18% Similarity=0.158 Sum_probs=270.7
Q ss_pred Cccccccccc-cCChhhHHHHHHHHHHhhccCCchHHh--hhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 001796 417 GWDHIVPCLG-RDPSISLAAVKLLYELMQDRSGWNVAV--CRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVD 493 (1012)
Q Consensus 417 ~i~~lv~lL~-~~~~~~~~A~~~L~~ls~~~~~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~ 493 (1012)
.+|.|+.+|. .|...++.|..+|..++.++...-+.. .|.+ .-.+|.+..+.+++++..|..|...+-..--..
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl---~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL---NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCch---HHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 4667777774 466889999999999887653210000 0111 245799999999999999999988765443222
Q ss_pred hhhHHHH-hhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHh
Q 001796 494 EENFCRA-AKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKL 572 (1012)
Q Consensus 494 ~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 572 (1012)
....+ .-..+++.+..+-...++++|++.+.+|.-|......|..=-=.++|+.++..-.+.|.++.-.|+.....+
T Consensus 206 --~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 206 --TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred --cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 22222 223456667767777899999999999887765433332222256677777777788888999999999999
Q ss_pred cCCCchHHHHHH--cCChHHHHHHhhcCCCChhH----------------------------------------------
Q 001796 573 SGCSKNRELISA--AGGIPQVLELMFSSHVPSNI---------------------------------------------- 604 (1012)
Q Consensus 573 s~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~---------------------------------------------- 604 (1012)
+..+..+..+.. ...||.|++-|.....+..+
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd 363 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD 363 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence 998866666554 35677777655543322111
Q ss_pred --------HHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhcc--CCChhhHHHHHHHHHHhccCchHHHHH
Q 001796 605 --------IVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNF--NSSYNVRKPALRALFRICKSEAELVKI 674 (1012)
Q Consensus 605 --------~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~--~~~~~~~~~al~aL~~L~~~~~~~~~~ 674 (1012)
+...+++|.-|+. +.....++.++-+++.. +....+|+.++-+|..++.. +.+
T Consensus 364 D~~~dWNLRkCSAAaLDVLan-------------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG----cM~ 426 (885)
T KOG2023|consen 364 DAFSDWNLRKCSAAALDVLAN-------------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG----CMQ 426 (885)
T ss_pred cccccccHhhccHHHHHHHHH-------------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH----Hhh
Confidence 0111111111110 11133455555555442 23356889999999998643 223
Q ss_pred HHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcC--CCchHHHHHHHHHHhc
Q 001796 675 AVVKA--NGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN--DAKHDVQMAAAGLLAN 750 (1012)
Q Consensus 675 ~i~~~--g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~~~~~Aa~aL~n 750 (1012)
.++.. ..+|.++.+|.+..+-+|.-.++.|...+..--.... ..-..|.|-.+++. .++..+|++|+.+.+-
T Consensus 427 g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~----~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAt 502 (885)
T KOG2023|consen 427 GFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR----DEYFKPVLEGLLRRLLDSNKKVQEAACSAFAT 502 (885)
T ss_pred hcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh----HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33333 2467888899999999999999999887654221111 11223334344432 2367899999998886
Q ss_pred cCCCCHHHHHHHHh--hccHHHHHHHhc---CCChhHHHHHHHHHHhccCC--CCHHHHHHHHHcCCHHHHHH---HHhc
Q 001796 751 LPKSELSLTMKLIE--LDGLNAIINILK---SGTMEAKENALSALFRFTDP--TNLEAQRNVVERGVYPLLVN---LLQI 820 (1012)
Q Consensus 751 L~~~~~~~~~~l~~--~g~i~~Lv~lL~---~~~~~~~~~a~~aL~~Ls~~--~~~~~~~~i~~~g~i~~Lv~---lL~s 820 (1012)
+-... ...++. .-++..|+..++ ..+-.+.--|+++|..=... +.+.+-+ -.+|+|++ +|.+
T Consensus 503 leE~A---~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiq-----iLmPPLi~KW~~lsd 574 (885)
T KOG2023|consen 503 LEEEA---GEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQ-----ILMPPLIEKWELLSD 574 (885)
T ss_pred HHHhc---cchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHH-----HhccHHHHHHHhcCc
Confidence 64311 112211 112222222221 22344566777777765422 2333322 25788875 4455
Q ss_pred CCHHH------HHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccC-
Q 001796 821 GSITA------KARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQG- 893 (1012)
Q Consensus 821 ~~~~v------k~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~- 893 (1012)
.+.++ -...+.||+. +|.-+.++...+ | +.+++.- +..+...-.+
T Consensus 575 ~DKdLfPLLEClSsia~AL~~---------------gF~P~~~~Vy~R-------c-----~~il~~t-~q~~~~~~~~~ 626 (885)
T KOG2023|consen 575 SDKDLFPLLECLSSIASALGV---------------GFLPYAQPVYQR-------C-----FRILQKT-LQLLAKVQQDP 626 (885)
T ss_pred ccchHHHHHHHHHHHHHHHhc---------------cccccCHHHHHH-------H-----HHHHHHH-HHHHHhccCCc
Confidence 55442 1223333332 111111111111 1 3333322 2222222111
Q ss_pred ----CChHHHHHHHHHHHHHhhccchhhhhHHh-hhcCCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 894 ----RVHATAYEAIQTLSTLVQEGCQQRGVNVL-HQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 894 ----~~~~v~~~Al~aL~~L~~~~~~~~~~~~i-~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
.+.+....++.-+..|+.. ...+.+.+ ..++-...+..++++..|++|..|-..|..+.+.
T Consensus 627 ~~~~pdkdfiI~sLDL~SGLaeg--Lg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~ 692 (885)
T KOG2023|consen 627 TVEAPDKDFIIVSLDLLSGLAEG--LGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKA 692 (885)
T ss_pred cccCCCcceEEEeHHHHhHHHHH--hhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 1223334477777777764 45566655 4555566777788899999999999999998875
No 54
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.58 E-value=3.5e-08 Score=72.40 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=33.3
Q ss_pred cccccccCCCc-eecCCCccccHHHHHHHHhcCCCCCCCC
Q 001796 264 CRITGTVMMDP-VSLYTGTTCERAAIEAWLDRREKTDPET 302 (1012)
Q Consensus 264 cpi~~~~m~dP-v~~~~g~t~~r~~i~~~~~~~~~~cp~~ 302 (1012)
||||++.++|| |+++|||+|+++||++|+.. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57799999999999999998 7899975
No 55
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.00061 Score=79.47 Aligned_cols=332 Identities=16% Similarity=0.172 Sum_probs=222.5
Q ss_pred HHHHHHHHHHHccccchhhhHhhhhcCCCchHHHHHHHHHHHHhhccccchhHhccCchHHHHHHhc-cCCCHHHHHHHH
Q 001796 317 LRQSIEEWKELNYCLNIRCCRAKLLSGIDSSELEALDQMQDLMRESSINKDWISIGGITDIIISILG-SSHNKDVKMKIL 395 (1012)
Q Consensus 317 l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~r~~i~~~g~v~~Lv~lL~-~~~~~~~~~~a~ 395 (1012)
-..-|+..|++-.. +..-.+...|+.-|+.+++. -|..++..|.-| ++..|. +..+++....++
T Consensus 20 ~aETI~kLcDRves-----------sTL~eDRR~A~rgLKa~srk---YR~~Vga~Gmk~-li~vL~~D~~D~E~ik~~L 84 (970)
T KOG0946|consen 20 AAETIEKLCDRVES-----------STLLEDRRDAVRGLKAFSRK---YREEVGAQGMKP-LIQVLQRDYMDPEIIKYAL 84 (970)
T ss_pred HHhHHHHHHHHHhh-----------ccchhhHHHHHHHHHHHHHH---HHHHHHHcccHH-HHHHHhhccCCHHHHHHHH
Confidence 46778888887321 11123455677777777655 355556666655 556665 456788888888
Q ss_pred HHHHHHhcccc------chh-----------hhhhhcCCcccccccccc-CChhhHHHHHHHHHHhhccCCchHHhhhhh
Q 001796 396 ITLKQLVKGHA------RNK-----------EKVIDYGGWDHIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVCRKL 457 (1012)
Q Consensus 396 ~~L~~La~~~~------~~~-----------~~i~~~g~i~~lv~lL~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i 457 (1012)
..+..+...++ +.+ ..|-..+-|..++.++.. |-.++..|+.+|-.+....+ .++...+
T Consensus 85 dTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~---~e~q~~l 161 (970)
T KOG0946|consen 85 DTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP---TELQDAL 161 (970)
T ss_pred HHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC---HHHHHHH
Confidence 88888866543 112 122223567777777754 56889999999999887543 3566667
Q ss_pred hhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCC----hHHHHHHHHHHHhccc
Q 001796 458 SQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGA----ESSRILMMKALLSMEL 533 (1012)
Q Consensus 458 ~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~----~~~~~~a~~aL~~Ls~ 533 (1012)
+..+-+|..|+.+|.+..+.+|..|+-.|..|...++.....++=.++++.|..++..+. .-+-..++..|.||..
T Consensus 162 l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 162 LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 788999999999999988889999999999999888888888888999999999997532 2467788888999887
Q ss_pred -ccchhhHhhhcCChHHHHhhhcC---CCh--------h--HHHHHHHHHHHhcCC-------CchHHHHHHcCChHHHH
Q 001796 534 -VDSNLELLGKEGIIPPLLGLVGS---GNF--------Q--SKELSLSVLVKLSGC-------SKNRELISAAGGIPQVL 592 (1012)
Q Consensus 534 -~~~~~~~i~~~g~i~~Lv~lL~~---~~~--------~--~~~~a~~~L~~Ls~~-------~~~~~~i~~~g~i~~Lv 592 (1012)
+..|...+.+.+-||.|.++|.. +|. . -...++.++..+... ..++..+..++++..|.
T Consensus 242 ~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc 321 (970)
T KOG0946|consen 242 NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLC 321 (970)
T ss_pred hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHH
Confidence 67889999999999999998853 221 1 223455556655532 23456788899999999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHhhccCc---cceecccCCccc--hhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccC
Q 001796 593 ELMFSSHVPSNIIVKCSEILEKLSSDGI---KFLVDEKGNRLE--LEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKS 667 (1012)
Q Consensus 593 ~lL~~~~~~~~~~~~a~~~L~nLa~~~~---~~~~~~~g~~l~--~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~ 667 (1012)
.++.+...+..+...+.-+++++...+. ..+.+....... ...++-.++.+... ...+..|..++.++......
T Consensus 322 ~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne-~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 322 TILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNE-KQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhc-cCCchHHHHHHHHHHHHHhc
Confidence 9988876666666777777777776211 111111000000 11223334444433 23345677777777666553
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.52 E-value=2.4e-06 Score=95.11 Aligned_cols=223 Identities=17% Similarity=0.190 Sum_probs=153.5
Q ss_pred CCcHHHHHHHhc--CChHHHHHHHHHHHhcccccchhhHh-hh------cCChHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 504 GWYKPLIDRIIQ--GAESSRILMMKALLSMELVDSNLELL-GK------EGIIPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 504 g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~~~~~~~~i-~~------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
+....++.+|.. .++++....+..+..+...+..+..+ .. .....++++++..+|..++..|+.+|..|..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 346666677753 57888889999999987755544333 32 1367888998988899999999999999998
Q ss_pred CCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhH
Q 001796 575 CSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVR 654 (1012)
Q Consensus 575 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~ 654 (1012)
....+..-...+.++.++..+.+..... +...+
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~-----------------------------------------------~~~~~ 167 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSS-----------------------------------------------DSELQ 167 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HH-----------------------------------------------HH---
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCC-----------------------------------------------CcchH
Confidence 7666554444566788888777632110 01255
Q ss_pred HHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhh------cC-CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHH
Q 001796 655 KPALRALFRICKSEAELVKIAVVKANGVSLILSLL------DD-TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEA 727 (1012)
Q Consensus 655 ~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll------~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~ 727 (1012)
..|+.+|.+|...+. .|..+.+.|+++.++.++ .+ .+..++..++-+++.+|.. +.....+.+.+.++.
T Consensus 168 ~~av~~L~~LL~~~~--~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~--~~~~~~~~~~~~i~~ 243 (312)
T PF03224_consen 168 YIAVQCLQNLLRSKE--YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE--PEIAEELNKKYLIPL 243 (312)
T ss_dssp HHHHHHHHHHHTSHH--HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS--HHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHhCcch--hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC--HHHHHHHhccchHHH
Confidence 778888888877665 679999999999999999 22 2456889999999999988 566666788889999
Q ss_pred HHHhhcCCCchHHHHHHHHHHhccCCCCHH-HHHHHHhhccHHHHHHHhcC
Q 001796 728 LVGFLENDAKHDVQMAAAGLLANLPKSELS-LTMKLIELDGLNAIINILKS 777 (1012)
Q Consensus 728 Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~-~~~~l~~~g~i~~Lv~lL~~ 777 (1012)
|+++++....+++...+.++|.||....+. +...++..|+++.+-.+...
T Consensus 244 L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 244 LADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999998887888999999999999986664 67778888877777666543
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.52 E-value=8.2e-07 Score=98.88 Aligned_cols=224 Identities=14% Similarity=0.195 Sum_probs=154.0
Q ss_pred hHHHHHHHhc--CCCHHHHHHHHHHHHHhhcCChhhHHHHhh------cCCcHHHHHHHhcCChHHHHHHHHHHHhcccc
Q 001796 463 GILFLVTLIK--GPVRESAECAEKILQQLFDVDEENFCRAAK------SGWYKPLIDRIIQGAESSRILMMKALLSMELV 534 (1012)
Q Consensus 463 ~i~~Lv~lL~--~~~~~~~~~A~~~L~~La~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 534 (1012)
....++.+|+ +++.++..+....+..+...++.....+.. .....++++++..++..++..++..|..+...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 3344444444 356778888888888888777665555543 23788999999999999999999999999886
Q ss_pred cchhhHhhhcCChHHHHhhhcC----CChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHH
Q 001796 535 DSNLELLGKEGIIPPLLGLVGS----GNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSE 610 (1012)
Q Consensus 535 ~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 610 (1012)
.+.+..-...+.++.+++.|.+ ++.+.+..++.+|.+|...++.|..+.+.|+++.++.++.......
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~-------- 207 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNS-------- 207 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--------------
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccC--------
Confidence 6555444346777888888765 3355779999999999999999999999999999999995211000
Q ss_pred HHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhc
Q 001796 611 ILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLD 690 (1012)
Q Consensus 611 ~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~ 690 (1012)
+..+..++.+++.++|-|+.+++ ....+.+.+.++.|++++.
T Consensus 208 ------------------------------------~~~~~Ql~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~L~~i~~ 249 (312)
T PF03224_consen 208 ------------------------------------NSSGIQLQYQALLCLWLLSFEPE--IAEELNKKYLIPLLADILK 249 (312)
T ss_dssp ---------------------------------------HHHHHHHHHHHHHHHTTSHH--HHHHHHTTSHHHHHHHHHH
T ss_pred ------------------------------------CCCchhHHHHHHHHHHHHhcCHH--HHHHHhccchHHHHHHHHH
Confidence 00113478999999999998876 4578888899999999987
Q ss_pred CC-CHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhh
Q 001796 691 DT-DSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFL 732 (1012)
Q Consensus 691 ~~-~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL 732 (1012)
.. .+++.+-++.+++|+....++.....++..+.++.+-.+.
T Consensus 250 ~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 250 DSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp H--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 65 7889999999999998776655666666555555544443
No 58
>PF05536 Neurochondrin: Neurochondrin
Probab=98.52 E-value=8.7e-05 Score=88.08 Aligned_cols=242 Identities=16% Similarity=0.106 Sum_probs=161.2
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChh---hHHHHhhcCCcHHHHHHHhcC-------ChHHHHHHHHHHHhc
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEE---NFCRAAKSGWYKPLIDRIIQG-------AESSRILMMKALLSM 531 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~---~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~L 531 (1012)
-.+...+.+|++.+.+.+..+...+.++...++. .++.+.++=+.+-|-++|+++ ....+.-|+..|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3466778899998877888888888899876553 344567777788899999873 345677888888888
Q ss_pred ccccchhhHhhhcCChHHHHhhhcCCCh-hHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHH
Q 001796 532 ELVDSNLELLGKEGIIPPLLGLVGSGNF-QSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSE 610 (1012)
Q Consensus 532 s~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 610 (1012)
+..++....---.+-||.|++.+.+.+. ++...|..+|..++.+++++..+++.|+++.|++.+.+.+. ..+.|..
T Consensus 85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~---~~E~Al~ 161 (543)
T PF05536_consen 85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSF---QMEIALN 161 (543)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcc---hHHHHHH
Confidence 8866554322224679999999987776 89999999999999999999999999999999999988433 3589999
Q ss_pred HHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchH---H-HHHHHHhcCcHHHHH
Q 001796 611 ILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAE---L-VKIAVVKANGVSLIL 686 (1012)
Q Consensus 611 ~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~---~-~~~~i~~~g~v~~Lv 686 (1012)
+|.++............. .....++..+-........ ..+-..+..|..+-...+. . ....-.-......+-
T Consensus 162 lL~~Lls~~~~~~~~~~~--~~l~~il~~La~~fs~~~~--~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~ 237 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDS--QLLHSILPSLARDFSSFHG--EDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLR 237 (543)
T ss_pred HHHHHHHhcchhhhhhhH--HHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHH
Confidence 999998732211111111 1122334444444443221 2455666666666443310 0 000001111223455
Q ss_pred HhhcCC-CHHHHHHHHHHHHHhccC
Q 001796 687 SLLDDT-DSEVREIAINLLFLFSHH 710 (1012)
Q Consensus 687 ~ll~~~-~~~v~~~a~~~L~~ls~~ 710 (1012)
.++++. .+.-|..++.+...+...
T Consensus 238 ~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 238 DILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 566664 677888888877776654
No 59
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.48 E-value=6.3e-08 Score=71.59 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=23.3
Q ss_pred cccccccCCC----ceecCCCccccHHHHHHHHhcC---CCCCC
Q 001796 264 CRITGTVMMD----PVSLYTGTTCERAAIEAWLDRR---EKTDP 300 (1012)
Q Consensus 264 cpi~~~~m~d----Pv~~~~g~t~~r~~i~~~~~~~---~~~cp 300 (1012)
||||.+ |.+ |++++||||||++||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 33577
No 60
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.43 E-value=2.2e-05 Score=85.57 Aligned_cols=290 Identities=14% Similarity=0.119 Sum_probs=192.3
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHH--HHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCc
Q 001796 637 VTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVK--IAVVKANGVSLILSLLDD-TDSEVREIAINLLFLFSHHEPE 713 (1012)
Q Consensus 637 v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~--~~i~~~g~v~~Lv~ll~~-~~~~v~~~a~~~L~~ls~~~~~ 713 (1012)
-..+++++...+.. +.....+++..++......+. ..-.. ...|-..+.+ .++.-..-|..+|..+... +
T Consensus 116 ~~~fl~ll~r~d~~--iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~--~ 188 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTF--IVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRV--D 188 (442)
T ss_pred hHHHHHHHhcCChH--HHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcC--c
Confidence 34566777665532 455567777777654332100 00000 1223344555 4566667777888887766 3
Q ss_pred chHHhhhcCCChHHHHHhh-cCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHH
Q 001796 714 GVVEYLLKPKRLEALVGFL-ENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-TMEAKENALSALF 791 (1012)
Q Consensus 714 ~~~~~l~~~~~i~~Lv~lL-~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~ 791 (1012)
+.+-.++...++..|+..+ ++..+...|....-++|-|+. ++...+.+...+.++.|.++++.. ...+.+-+++++.
T Consensus 189 eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~ 267 (442)
T KOG2759|consen 189 EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFR 267 (442)
T ss_pred chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788899999988 666678899999999999988 555667777889999999999866 5678888999999
Q ss_pred hccCCC-CH----HHHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHhhccCCcCCc-----------------cC
Q 001796 792 RFTDPT-NL----EAQRNVVERGVYPLLVNLLQIG---SITAKARAAALIGTLSTSSPKFT-----------------DM 846 (1012)
Q Consensus 792 ~Ls~~~-~~----~~~~~i~~~g~i~~Lv~lL~s~---~~~vk~~Aa~aL~nLs~~~~~l~-----------------~~ 846 (1012)
|+.... +. +....++..+ ++.-++.|... ++++....-..-..|-.+...|+ |+
T Consensus 268 Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~ 346 (442)
T KOG2759|consen 268 NLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPV 346 (442)
T ss_pred HHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcc
Confidence 998763 22 2333445554 45555555543 56665555444444433333222 11
Q ss_pred CCCCcccccCCCCCccccccCCccCCCcchhhhh--cCcchHHHHhccCCC-hHHHHHHHHHHHHHhhccchhhhhHHhh
Q 001796 847 PESAGCWCFRPSRAHLCQVHGGICSESTSFCLLK--ANALPHLVKLLQGRV-HATAYEAIQTLSTLVQEGCQQRGVNVLH 923 (1012)
Q Consensus 847 ~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~--~gai~~Lv~lL~~~~-~~v~~~Al~aL~~L~~~~~~~~~~~~i~ 923 (1012)
.++..||. . |..++-+ -..+..|+.+|+..+ +.+...|+.=++..... .|+|+..+.
T Consensus 347 Hk~e~FW~------------e------Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~--yP~gk~vv~ 406 (442)
T KOG2759|consen 347 HKSEKFWR------------E------NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRH--YPEGKAVVE 406 (442)
T ss_pred ccccchHH------------H------hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh--CchHhHHHH
Confidence 12222222 1 1122322 246788999998755 56777788889998876 799999999
Q ss_pred hcCCchHHHHHhccCChhhHhHHHHHHHHHhc
Q 001796 924 QEEAIKPTLEILTWGTDSLKEEALGFLEKVFM 955 (1012)
Q Consensus 924 ~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~ 955 (1012)
+.||=+.+++++.+.+|++|.+|.-++..+.-
T Consensus 407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 407 KYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887753
No 61
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.6e-06 Score=88.17 Aligned_cols=185 Identities=18% Similarity=0.257 Sum_probs=154.6
Q ss_pred CCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHH
Q 001796 648 NSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEA 727 (1012)
Q Consensus 648 ~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~ 727 (1012)
..+++-++.|+.-|..++.+-++. ..+...||...++.++++.+..+|..|++++...+..+|... ..+.+.++++.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnA--ndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q-e~v~E~~~L~~ 170 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNA--NDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ-EQVIELGALSK 170 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhH--HhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcccHHH
Confidence 345566777777777777765654 778899999999999999999999999999999998866554 45688999999
Q ss_pred HHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcC--CChhHHHHHHHHHHhccCCCCHHHHHHH
Q 001796 728 LVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKS--GTMEAKENALSALFRFTDPTNLEAQRNV 805 (1012)
Q Consensus 728 Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~~~~~~~~~~i 805 (1012)
|+.++.++++..++..|..+++.|-.+++.....+...++...|...+++ .+...+.+++..+..+...+ ...+..+
T Consensus 171 Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~d~~ 249 (342)
T KOG2160|consen 171 LLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDEDIA 249 (342)
T ss_pred HHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhhhHH
Confidence 99999988888899999999999999998889999999999999999998 46778999999999998763 3334566
Q ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 806 VERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 806 ~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
...++-..++.+....+..+.+.+..++..+
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~ 280 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSL 280 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHH
Confidence 6677777788888888889999988877665
No 62
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.34 E-value=1.5e-07 Score=74.10 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=33.6
Q ss_pred ceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHH
Q 001796 261 AFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSI 321 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i 321 (1012)
-++|++|.++|++||.+ .|.|.||+.||...+.. .||+|+.|--..++.-|+.|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 57899999999999976 99999999999876643 499999999889999999998886
No 63
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.31 E-value=4.6e-07 Score=67.43 Aligned_cols=39 Identities=28% Similarity=0.450 Sum_probs=35.9
Q ss_pred cccccccCCCce-ecCCCccccHHHHHHHHh-cCCCCCCCC
Q 001796 264 CRITGTVMMDPV-SLYTGTTCERAAIEAWLD-RREKTDPET 302 (1012)
Q Consensus 264 cpi~~~~m~dPv-~~~~g~t~~r~~i~~~~~-~~~~~cp~~ 302 (1012)
||||++.+.+|+ +++|||+|++.||.+|+. .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 566789975
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.28 E-value=1.5e-05 Score=86.86 Aligned_cols=268 Identities=18% Similarity=0.158 Sum_probs=184.5
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHH--HHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHh
Q 001796 672 VKIAVVKANGVSLILSLLDDTDSE--VREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLA 749 (1012)
Q Consensus 672 ~~~~i~~~g~v~~Lv~ll~~~~~~--v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~ 749 (1012)
.+..++..|+++.|+.++..++.+ ++..|.++|..+... ++. +.+...| +..++.+-+...+.+.+...+++|.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~-d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENR-DRVARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhh-hHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 568888999999999999998655 689999998875443 222 2223223 5555555566667788899999999
Q ss_pred ccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHH
Q 001796 750 NLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARA 829 (1012)
Q Consensus 750 nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~A 829 (1012)
++=.++.+..+.++..|++..++.-.+..+|.+.+.++-+|.|+......+.++.+++..+-..|.-+-.+.++-.+..|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 99999999999999999999999888888999999999999999988778888999999999999888888888899999
Q ss_pred HHHHHhhccCCcCCccCCCCCccc-------ccCCCCCcc--ccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHH
Q 001796 830 AALIGTLSTSSPKFTDMPESAGCW-------CFRPSRAHL--CQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAY 900 (1012)
Q Consensus 830 a~aL~nLs~~~~~l~~~~~~~~~~-------c~~~~~~~~--~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~ 900 (1012)
+.|.+.++.+.+--..+.+++... ...|.+-.. ....+|+ .-.-++.|+-+|++..-+.+
T Consensus 328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~----------~~d~LqRLvPlLdS~R~EAq- 396 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGR----------GPDDLQRLVPLLDSNRLEAQ- 396 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccC----------ChHHHHHhhhhhhcchhhhh-
Confidence 999999876543211122222111 011111000 0000010 12346677888886544443
Q ss_pred HHHHHHHHHhhccc--hhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhc
Q 001796 901 EAIQTLSTLVQEGC--QQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFM 955 (1012)
Q Consensus 901 ~Al~aL~~L~~~~~--~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~ 955 (1012)
++.|++.-+.... .+.-.+.+.+-|+|..|-++..+.+......|..+|.-|..
T Consensus 397 -~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 397 -CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred -hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 3333332222111 12234567888999999999888877766677777766643
No 65
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=3.9e-05 Score=87.32 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=83.4
Q ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhh----cCCcHHHHHHHhcCChHHHHHHHHHHHhcccccc
Q 001796 461 CSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAK----SGWYKPLIDRIIQGAESSRILMMKALLSMELVDS 536 (1012)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~ 536 (1012)
...+|.|..+|.+++....+-|..+|..++..+.+.-..-.. .-.+|.++++.++.++..|..|+.++...-....
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 467899999999999999999999999999765433222111 1257889999999999999999998865544222
Q ss_pred hhhHhhh-cCChHHHHhhhcCCChhHHHHHHHHHHHhcCC
Q 001796 537 NLELLGK-EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGC 575 (1012)
Q Consensus 537 ~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 575 (1012)
...+.. ...++.+..+-.+.+++++++.+.+|..|-..
T Consensus 207 -qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 207 -QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred -HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 222222 34566677777778899999999999888643
No 66
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00047 Score=80.25 Aligned_cols=485 Identities=15% Similarity=0.141 Sum_probs=256.2
Q ss_pred ccccccccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCC--CHHHHHHHHHHHHH-hhcCChhh
Q 001796 420 HIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGP--VRESAECAEKILQQ-LFDVDEEN 496 (1012)
Q Consensus 420 ~lv~lL~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~-La~~~~~~ 496 (1012)
.+.+-+++|..+++.|-..|.++...+- .+++..|...|.+. ....|..|.-.|+| |.+++++.
T Consensus 6 ~le~tlSpD~n~~~~Ae~~l~~~~~~nf-------------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~ 72 (859)
T KOG1241|consen 6 LLEKTLSPDQNVRKRAEKQLEQAQSQNF-------------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPER 72 (859)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHhccH-------------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHH
Confidence 3445567788888888888888876442 25666677766543 33566666666665 33333333
Q ss_pred HHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCC-
Q 001796 497 FCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGC- 575 (1012)
Q Consensus 497 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~- 575 (1012)
+..... ++| ....+.|..+- ..+.+-|.+..+.....|+.++..++..
T Consensus 73 k~~~~q--------RWl------------------~l~~e~reqVK-----~~il~tL~~~ep~~~s~Aaq~va~IA~~E 121 (859)
T KOG1241|consen 73 KQQYQQ--------RWL------------------QLPAEIREQVK-----NNILRTLGSPEPRRPSSAAQCVAAIACIE 121 (859)
T ss_pred HHHHHH--------HHH------------------cCCHHHHHHHH-----HHHHHHcCCCCCCccchHHHHHHHHHHhh
Confidence 332221 122 11111121111 1222334444555556677777766632
Q ss_pred -CchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhH
Q 001796 576 -SKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVR 654 (1012)
Q Consensus 576 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~ 654 (1012)
|.|+= .+.++.|+......... .+++.++.+|..+|.+-....... ....++..++.-.+...++..+|
T Consensus 122 lP~n~w----p~li~~lv~nv~~~~~~-~~k~~slealGyice~i~pevl~~-----~sN~iLtaIv~gmrk~e~s~~vR 191 (859)
T KOG1241|consen 122 LPQNQW----PELIVTLVSNVGEEQAS-MVKESSLEALGYICEDIDPEVLEQ-----QSNDILTAIVQGMRKEETSAAVR 191 (859)
T ss_pred CchhhC----HHHHHHHHHhcccccch-HHHHHHHHHHHHHHccCCHHHHHH-----HHhHHHHHHHhhccccCCchhHH
Confidence 22220 11233333333333222 466888888888887322211111 12345666666666666667799
Q ss_pred HHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcC
Q 001796 655 KPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN 734 (1012)
Q Consensus 655 ~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~ 734 (1012)
-.|+.+|+|--.+..+......-..=.++...+.-++++.+++.+|..+|..+..-.-+.....+ .......-+.-+++
T Consensus 192 Laa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM-~~alfaitl~amks 270 (859)
T KOG1241|consen 192 LAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYM-EQALFAITLAAMKS 270 (859)
T ss_pred HHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 99999999864433211112222222344566667788999999999888776532111111111 11112222333453
Q ss_pred CCchHHHHHHHHHHhccCCCCHHHHH---------------HHH---hhccHHHHHHHhcCCCh-------hHHHHHHHH
Q 001796 735 DAKHDVQMAAAGLLANLPKSELSLTM---------------KLI---ELDGLNAIINILKSGTM-------EAKENALSA 789 (1012)
Q Consensus 735 ~~~~~~~~~Aa~aL~nL~~~~~~~~~---------------~l~---~~g~i~~Lv~lL~~~~~-------~~~~~a~~a 789 (1012)
. ++++...+..--++++.-+-+..- .+. -.+++|.|+++|...++ ..-..|...
T Consensus 271 ~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 271 D-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHH
Confidence 3 667777777666666542222110 111 12678889998865322 133333333
Q ss_pred HHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCc
Q 001796 790 LFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGI 869 (1012)
Q Consensus 790 L~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~ 869 (1012)
|.-++..-. ..+.. .++|-+-+-+++++.+-+..|+.|++.+-. +.
T Consensus 350 L~l~A~~~~----D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~----------------------------gp- 395 (859)
T KOG1241|consen 350 LMLFAQCVG----DDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILE----------------------------GP- 395 (859)
T ss_pred HHHHHHHhc----ccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhc----------------------------CC-
Confidence 333322100 11111 244444445567788899999999987621 11
Q ss_pred cCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhH-HhhhcCCchHHHHHhccCChhhHhHHHH
Q 001796 870 CSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVN-VLHQEEAIKPTLEILTWGTDSLKEEALG 948 (1012)
Q Consensus 870 ~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~-~i~~~~~v~~L~~ll~s~~~~~~~~a~~ 948 (1012)
| +. +..-+..++++.++.++.+..-.+...+.++|+.++.. .++.+. ...-.+-+..++.-+ ...|.+..+++|
T Consensus 396 ~-~~-~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~--l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CW 470 (859)
T KOG1241|consen 396 E-PD-KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF--LPEAIINQELLQSKLSALLEGL-NDEPRVASNVCW 470 (859)
T ss_pred c-hh-hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh--chhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHH
Confidence 1 00 11222378999999999988788888899999999974 332211 111112233333333 468899999999
Q ss_pred HHHHHhch-Hh-hHhhhccccc----c-----hhhhhhhhccc-CCchHHHHHHHHHHHHHhccC
Q 001796 949 FLEKVFMS-KE-MVDTYGSSAR----L-----LLVPLTSRNVH-EDGSLERKAAKVLSLIERYSR 1001 (1012)
Q Consensus 949 aL~~l~~~-~~-~~~~~~~~~~----~-----~l~~L~~~~~~-~~~~~~~~Aa~~L~~L~~~~~ 1001 (1012)
++..+... .+ .... +...- + .|+..+.+ .+ .....|..|-.+|..|=+...
T Consensus 471 Af~~Laea~~eA~~s~-~qt~~~t~~y~~ii~~Ll~~tdr-~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSN-GQTDPATPFYEAIIGSLLKVTDR-ADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHHHHHHHHHhccCC-CCCCccchhHHHHHHHHHhhccc-cccchhhHHHHHHHHHHHHHHcCc
Confidence 99999965 22 2222 11110 1 12222221 12 234788888888887766543
No 67
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.21 E-value=5.6e-07 Score=93.48 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=61.7
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHHc
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELN 328 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~~ 328 (1012)
.-++|-||.+.|+-||+++||||||.-||..++.. +..||.|..+.....|+-|.-|...|+.+-..+
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999976 889999999999999999999999988876543
No 68
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.16 E-value=1.4e-06 Score=90.21 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=42.1
Q ss_pred CCCceecccccccCCCc--------eecCCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 258 PLNAFKCRITGTVMMDP--------VSLYTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dP--------v~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
..++..||||++.+.+| |+.+|||+||+.||.+|+.. +.+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 35678999999988774 56689999999999999975 779999999875
No 69
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.16 E-value=1.3e-06 Score=68.10 Aligned_cols=47 Identities=26% Similarity=0.183 Sum_probs=41.3
Q ss_pred CceecccccccCCCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTT-CERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t-~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
+++.|+||++-+.|+++.+|||. ||..|+.+|+. +..+||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 47899999999999999999999 99999999998 4789999999865
No 70
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.16 E-value=9.1e-05 Score=80.88 Aligned_cols=210 Identities=12% Similarity=0.085 Sum_probs=147.8
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccc--cchhhHhhhcCChHHHHh
Q 001796 475 VRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELV--DSNLELLGKEGIIPPLLG 552 (1012)
Q Consensus 475 ~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~Lv~ 552 (1012)
..+.+...+.+|.++..++++....++..|++..++-..+..++...++++.+|+|++.+ ...+..|++..+-+.|.-
T Consensus 235 ~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~ 314 (832)
T KOG3678|consen 235 PVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP 314 (832)
T ss_pred cHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh
Confidence 457788888999999999999999999999999999999988999999999999999885 456888999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChH---HHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCC
Q 001796 553 LVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIP---QVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGN 629 (1012)
Q Consensus 553 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~---~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~ 629 (1012)
+-.+.|+-.+..|+-+...|++..+.-..+..+|.+. +++..+..+... .|..+ ... |
T Consensus 315 LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FA---------------RD~hd-~aQ--G- 375 (832)
T KOG3678|consen 315 LAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFA---------------RDAHD-YAQ--G- 375 (832)
T ss_pred hhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhh---------------hhhhh-hhc--c-
Confidence 8888888899999999999999888888888888654 444444333111 00000 000 0
Q ss_pred ccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhcc----CchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 001796 630 RLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICK----SEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLF 705 (1012)
Q Consensus 630 ~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~----~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~ 705 (1012)
...+-++.|+-++++.. ....++.+++-.+. .-.++ .+.+-+-|+|+.|-++..+++.-...-|-.+|.
T Consensus 376 --~~~d~LqRLvPlLdS~R----~EAq~i~AF~l~~EAaIKs~Q~K-~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 376 --RGPDDLQRLVPLLDSNR----LEAQCIGAFYLCAEAAIKSLQGK-TKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred --CChHHHHHhhhhhhcch----hhhhhhHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 12456778888887522 33334444332211 11111 134455689999999888776655555666777
Q ss_pred HhccC
Q 001796 706 LFSHH 710 (1012)
Q Consensus 706 ~ls~~ 710 (1012)
.+...
T Consensus 449 viGEE 453 (832)
T KOG3678|consen 449 VIGEE 453 (832)
T ss_pred Hhccc
Confidence 66544
No 71
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00088 Score=78.06 Aligned_cols=344 Identities=13% Similarity=0.075 Sum_probs=188.2
Q ss_pred cChHHHHHHHhcC-------CCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHH----hcCChHHHHHHHHHHH
Q 001796 461 CSGILFLVTLIKG-------PVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRI----IQGAESSRILMMKALL 529 (1012)
Q Consensus 461 ~g~i~~Lv~lL~~-------~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~aL~ 529 (1012)
.+.+|.|+++|.. +++.....|...|.-++. ......+|+.+.++ ++++-.-|..++.+++
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~--------~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ--------CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFG 389 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH--------HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHH
Confidence 4778999998863 223345555555555442 22344555555555 4566677788888888
Q ss_pred hcccc-cchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCC-CchH-HHHHHcCChHHHHHHhhcCCCChhHHH
Q 001796 530 SMELV-DSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGC-SKNR-ELISAAGGIPQVLELMFSSHVPSNIIV 606 (1012)
Q Consensus 530 ~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~ 606 (1012)
.+-.. +..+..-...+++|.++.++.++.--++..++++|+.++.. ++.+ ......+.++.++.-|.+. +.+..
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De---Prva~ 466 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE---PRVAS 466 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC---chHHH
Confidence 87664 34455555688999999999977777889999999999964 3222 2223334455555555443 44568
Q ss_pred HHHHHHHHhhccCccceecc-cCCccc--hhHHHHHHHHHHhccC-CChhhHHHHHHHHHHhccCchHHHHHHHHhcC--
Q 001796 607 KCSEILEKLSSDGIKFLVDE-KGNRLE--LEPIVTNLLTLQQNFN-SSYNVRKPALRALFRICKSEAELVKIAVVKAN-- 680 (1012)
Q Consensus 607 ~a~~~L~nLa~~~~~~~~~~-~g~~l~--~~~~v~~Ll~ll~~~~-~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g-- 680 (1012)
+++|++.+|+....+..... .+.... -+.++..|+..-...+ .....|..|-.+|..|.++++..+-..+.+.-
T Consensus 467 N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~ 546 (859)
T KOG1241|consen 467 NVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLV 546 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999996222212222 111111 1445555555544322 12247888888999988876543322222110
Q ss_pred cHHHHHH-----hhcCCC----HHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhcc
Q 001796 681 GVSLILS-----LLDDTD----SEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANL 751 (1012)
Q Consensus 681 ~v~~Lv~-----ll~~~~----~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL 751 (1012)
....|=+ .+...+ .+++..-+..|..+-...+..... .....+..+++++.+++..-+++.|..+++-|
T Consensus 547 il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~--~~d~iM~lflri~~s~~s~~v~e~a~laV~tl 624 (859)
T KOG1241|consen 547 ILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIRE--VSDQIMGLFLRIFESKRSAVVHEEAFLAVSTL 624 (859)
T ss_pred HHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchh--HHHHHHHHHHHHHcCCccccchHHHHHHHHHH
Confidence 0111111 122121 234444455555543322222221 12345667778887755555666666666555
Q ss_pred CCCCH-HHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC
Q 001796 752 PKSEL-SLTMKLIELDGLNAIINILKSG-TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG 821 (1012)
Q Consensus 752 ~~~~~-~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 821 (1012)
...-. .+.+ .-.-..|.|..-|++. ...+-..|++....++..-..+. .....+.+..|++-|+++
T Consensus 625 ~~~Lg~~F~k--ym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i--~py~d~~mt~Lvq~Lss~ 692 (859)
T KOG1241|consen 625 AESLGKGFAK--YMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDI--LPYCDELMTVLVQCLSSP 692 (859)
T ss_pred HHHHhHhHHH--HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHccCc
Confidence 43211 1111 1123456666666444 33466677777777766422221 122335677777777765
No 72
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.0024 Score=75.08 Aligned_cols=423 Identities=16% Similarity=0.173 Sum_probs=220.1
Q ss_pred hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHH
Q 001796 430 SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPL 509 (1012)
Q Consensus 430 ~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~L 509 (1012)
.++-.|+.+|.+++.. +.++ ...|.+.+++++.++-++.+|+.+...+-...++-. .-+++..
T Consensus 122 ~vVglAL~alg~i~s~------Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~-----e~f~~~~ 184 (866)
T KOG1062|consen 122 YVVGLALCALGNICSP------EMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV-----EHFVIAF 184 (866)
T ss_pred eehHHHHHHhhccCCH------HHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH-----HHhhHHH
Confidence 5667888888888652 3334 457888889999999999999887776654443332 2334555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcccc-cchhhHhhhcCChHHHHhhhcC---------------CChhHHHHHHHHHHHhc
Q 001796 510 IDRIIQGAESSRILMMKALLSMELV-DSNLELLGKEGIIPPLLGLVGS---------------GNFQSKELSLSVLVKLS 573 (1012)
Q Consensus 510 v~lL~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~Ls 573 (1012)
..+|.+.+.-+-..++..+..++.. +++-...-+ .++.||..|+. .+|-++-..++.|+-|-
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG 262 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG 262 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc
Confidence 6666666666666666666666662 333222222 45555555421 23556667777777766
Q ss_pred CCCchH-HHHHHcCChHHHHHHhhcCCC----ChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccC
Q 001796 574 GCSKNR-ELISAAGGIPQVLELMFSSHV----PSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFN 648 (1012)
Q Consensus 574 ~~~~~~-~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~ 648 (1012)
..+... ..|- ..|-++.....+ ...+...|+.++..+-.++ | ...-++..|-+.+.+.+
T Consensus 263 q~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~--------~---LrvlainiLgkFL~n~d 326 (866)
T KOG1062|consen 263 QNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRSNS--------G---LRVLAINILGKFLLNRD 326 (866)
T ss_pred CCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccCCc--------h---HHHHHHHHHHHHhcCCc
Confidence 544332 2221 122222222111 1112223333332222100 0 00112233333333322
Q ss_pred CChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHH
Q 001796 649 SSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEAL 728 (1012)
Q Consensus 649 ~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~L 728 (1012)
..+|.-|+..|......+++.+.+. + ..+++.|++++..++..|+.++..+... .+... .+..|
T Consensus 327 --~NirYvaLn~L~r~V~~d~~avqrH-r-----~tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~------mv~eL 390 (866)
T KOG1062|consen 327 --NNIRYVALNMLLRVVQQDPTAVQRH-R-----STILECLKDPDVSIKRRALELSYALVNE--SNVRV------MVKEL 390 (866)
T ss_pred --cceeeeehhhHHhhhcCCcHHHHHH-H-----HHHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHH------HHHHH
Confidence 2366666666666655544321111 1 3578899999999999999999988765 33322 25667
Q ss_pred HHhhcCCCchHHHHHHHHHHhccCCC-CHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHH
Q 001796 729 VGFLENDAKHDVQMAAAGLLANLPKS-ELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVE 807 (1012)
Q Consensus 729 v~lL~~~~~~~~~~~Aa~aL~nL~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~ 807 (1012)
+..|... +.+.+...++-+.-++.. .++ .+|. |..+.+.+.....-++..++..|..+..+.-++....
T Consensus 391 l~fL~~~-d~~~k~~~as~I~~laEkfaP~-k~W~-----idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y--- 460 (866)
T KOG1062|consen 391 LEFLESS-DEDFKADIASKIAELAEKFAPD-KRWH-----IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY--- 460 (866)
T ss_pred HHHHHhc-cHHHHHHHHHHHHHHHHhcCCc-chhH-----HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH---
Confidence 7777666 556666555545444432 221 2222 5556666666555555555555555443321111000
Q ss_pred cCCHHHHHH------HHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhc
Q 001796 808 RGVYPLLVN------LLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKA 881 (1012)
Q Consensus 808 ~g~i~~Lv~------lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~ 881 (1012)
.+..|.. ++....+.....|.|+++.-+. .+ ..+.|. +.-..+-+.
T Consensus 461 --~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGd---ll---------------l~~~~~--------~~p~~vtes 512 (866)
T KOG1062|consen 461 --AVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGD---LL---------------LDGANE--------EEPIKVTES 512 (866)
T ss_pred --HHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhH---Hh---------------hcCccc--------cCCCcCCHH
Confidence 0111111 1122234456667777765421 00 000111 111233356
Q ss_pred CcchHHHHhccC--CChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHH-HhccCChhhHhHHHHH
Q 001796 882 NALPHLVKLLQG--RVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLE-ILTWGTDSLKEEALGF 949 (1012)
Q Consensus 882 gai~~Lv~lL~~--~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~-ll~s~~~~~~~~a~~a 949 (1012)
.++..|-+++.+ .+..++..|+.||..|..- ..... .-|..|+. ...+-+.++|.+|...
T Consensus 513 divd~l~~v~~~~~s~~~tk~yal~Al~KLSsr--~~s~~------~ri~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 513 DIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR--FHSSS------ERIKQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh--ccccH------HHHHHHHHHhcccccHHHHHHHHHH
Confidence 788888888764 4456777799999999873 11111 11333333 3346688888888773
No 73
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.3e-06 Score=87.55 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCceecccccccCCCceecCCCccccHHHHHHHHhc--CCCCCCCCCcccCCCCCccCHHH
Q 001796 259 LNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR--REKTDPETGVVLEDTSLRSNSPL 317 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~--~~~~cp~~~~~l~~~~l~~n~~l 317 (1012)
-..|-|-||++.=+|||++-|||=||=.||.+|++- +...||+|+...+..+++|-|.-
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 358999999999999999999999999999999984 34568999999999999997743
No 74
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7.2e-05 Score=80.81 Aligned_cols=188 Identities=21% Similarity=0.210 Sum_probs=145.5
Q ss_pred CCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHH
Q 001796 735 DAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLL 814 (1012)
Q Consensus 735 ~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~L 814 (1012)
+.+.+.+..|.--|..++. +-++...+...|++.+++.++++++..+|+.|++++.....+ +|..|..+.+.|+.+.|
T Consensus 94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qN-NP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQN-NPKSQEQVIELGALSKL 171 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHcccHHHH
Confidence 3456667777777777776 556688899999999999999999999999999999999886 79999999999999999
Q ss_pred HHHHhcCC-HHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccC
Q 001796 815 VNLLQIGS-ITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQG 893 (1012)
Q Consensus 815 v~lL~s~~-~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~ 893 (1012)
...+.+.+ ..++.+|..|++.+-++.+ .+ ...+...++...|.+.|.+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~-------------------------~g------~~~fl~~~G~~~L~~vl~~ 220 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNK-------------------------PG------QDEFLKLNGYQVLRDVLQS 220 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCc-------------------------HH------HHHHHhcCCHHHHHHHHHc
Confidence 99998654 5688999999998844322 11 1345567889999999998
Q ss_pred CC--hHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhchH
Q 001796 894 RV--HATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSK 957 (1012)
Q Consensus 894 ~~--~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~ 957 (1012)
++ ...+..++.-+..|... .......+...+....+..+..+.+.++++.+..++.......
T Consensus 221 ~~~~~~lkrK~~~Ll~~Ll~~--~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 221 NNTSVKLKRKALFLLSLLLQE--DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred CCcchHHHHHHHHHHHHHHHh--hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 54 45566688888888864 2233334444455666677777889999999999988887653
No 75
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.10 E-value=0.00014 Score=79.39 Aligned_cols=349 Identities=14% Similarity=0.101 Sum_probs=211.0
Q ss_pred cccccccc-C-ChhhHHHHHHHHHHhhccCCchHHhhhhh-hh-ccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChh
Q 001796 420 HIVPCLGR-D-PSISLAAVKLLYELMQDRSGWNVAVCRKL-SQ-QCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEE 495 (1012)
Q Consensus 420 ~lv~lL~~-~-~~~~~~A~~~L~~ls~~~~~~~~~~~~~i-~~-~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~ 495 (1012)
.++.+++. + ....+.++..+-.+...+..... ..... .. ..-.-+..+.+|...+.-....+..++..++.....
T Consensus 69 ~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~-lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~ 147 (442)
T KOG2759|consen 69 TFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD-LFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGNC 147 (442)
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH-HHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhccc
Confidence 44455543 2 23445566666666554433211 11111 11 122357778888888888888788888877643321
Q ss_pred hHHHHhhcCC-cHHHHHHHhc-CChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcC--CChhHHHHHHHHHHH
Q 001796 496 NFCRAAKSGW-YKPLIDRIIQ-GAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGS--GNFQSKELSLSVLVK 571 (1012)
Q Consensus 496 ~~~~i~~~g~-i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~~L~~ 571 (1012)
+ ....+-.+ ...|-..+.+ .+.+...-++++|..+...++.|..++.++++..++..+.+ .+-.++...+.+++-
T Consensus 148 ~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWl 226 (442)
T KOG2759|consen 148 K-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWL 226 (442)
T ss_pred c-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHH
Confidence 1 11111111 1223334444 46777888999999999999999999999999999998843 346789999999999
Q ss_pred hcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecc-cCCccchhHHHHHHHHHHhccCCC
Q 001796 572 LSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDE-KGNRLELEPIVTNLLTLQQNFNSS 650 (1012)
Q Consensus 572 Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~-~g~~l~~~~~v~~Ll~ll~~~~~~ 650 (1012)
|+.++.-.+.+...+.|+.|++++++.. ...+.+.++.++.|+...+....... ........++.+.+-.+....-++
T Consensus 227 LtFn~~~ae~~~~~~li~~L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysD 305 (442)
T KOG2759|consen 227 LTFNPHAAEKLKRFDLIQDLSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSD 305 (442)
T ss_pred hhcCHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCc
Confidence 9999888888888899999999999864 34566889999999987331100000 000011111222222222222333
Q ss_pred hhhHHHHHHHHHHh-------ccCchHHHHHHHHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhccCCCcchHHh
Q 001796 651 YNVRKPALRALFRI-------CKSEAELVKIAVVKANGVSLILSLLDD-----TDSEVREIAINLLFLFSHHEPEGVVEY 718 (1012)
Q Consensus 651 ~~~~~~al~aL~~L-------~~~~~~~~~~~i~~~g~v~~Lv~ll~~-----~~~~v~~~a~~~L~~ls~~~~~~~~~~ 718 (1012)
+++....-..--.| ++++. ....+ ..| .|.- +..-.+++|-.+- ++.
T Consensus 306 EDL~~di~~L~e~L~~svq~LsSFDe--Y~sEl-~sG-------~L~WSP~Hk~e~FW~eNa~rln--------enn--- 364 (442)
T KOG2759|consen 306 EDLVDDIEFLTEKLKNSVQDLSSFDE--YKSEL-RSG-------RLEWSPVHKSEKFWRENADRLN--------ENN--- 364 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHH--HHHHH-HhC-------CcCCCccccccchHHHhHHHHh--------hcc---
Confidence 33332222111111 00000 00000 001 0000 0111333332211 111
Q ss_pred hhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccC
Q 001796 719 LLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTD 795 (1012)
Q Consensus 719 l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 795 (1012)
...+..|+.+|..+.++.....|+-=++.....-|+.+..+.+.||=..+.+++.+++++++-+|+.++..+..
T Consensus 365 ---yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 ---YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred ---HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 24578899999888777777888887888888888888888899999999999999999999999999877644
No 76
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.0017 Score=73.16 Aligned_cols=430 Identities=14% Similarity=0.128 Sum_probs=231.4
Q ss_pred ccccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCChhhHHHHh
Q 001796 424 CLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKG--PVRESAECAEKILQQLFDVDEENFCRAA 501 (1012)
Q Consensus 424 lL~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~A~~~L~~La~~~~~~~~~i~ 501 (1012)
.|++|+..+..|=+-|.++...+-. ..+..++..|-+ ..++.|..|.-+|.|--..+++.+..-.
T Consensus 14 vLspD~n~rl~aE~ql~~l~~~dF~-------------qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~ 80 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQSGDFE-------------QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGC 80 (858)
T ss_pred cCCCCCCccccHHHHHHHhccccHH-------------HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence 4678888888888888888765421 345566666643 3456777777777764322222221111
Q ss_pred hcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHH
Q 001796 502 KSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNREL 581 (1012)
Q Consensus 502 ~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 581 (1012)
.. .+ +...++.|..+- ....+.|.+..+..-..|+..+..++..+
T Consensus 81 ~q------------------------rW-~~~~~E~k~qvK-----~~al~aL~s~epr~~~~Aaql~aaIA~~E----- 125 (858)
T COG5215 81 SQ------------------------RW-LGMRHESKEQVK-----GMALRALKSPEPRFCTMAAQLLAAIARME----- 125 (858)
T ss_pred HH------------------------hh-ccCCHHHHHHHH-----HHHHHHhcCCccHHHHHHHHHHHHHHHhh-----
Confidence 10 00 111222222221 12234456667778888888888887531
Q ss_pred HHHcCChHHHHHHhhcC---CCChhHHHHHHHHHHHhhc-cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHH
Q 001796 582 ISAAGGIPQVLELMFSS---HVPSNIIVKCSEILEKLSS-DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPA 657 (1012)
Q Consensus 582 i~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~~L~nLa~-~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~a 657 (1012)
...|.-|-|++.|... ..++..+..++.++.+.|. ...+.++... ..++..++.--....++..+|-.|
T Consensus 126 -lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~s------N~il~aiv~ga~k~et~~avRLaa 198 (858)
T COG5215 126 -LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMS------NVILFAIVMGALKNETTSAVRLAA 198 (858)
T ss_pred -CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHh------hHHHHHHHHhhcccCchHHHHHHH
Confidence 1123344444444321 2334456788888888886 2222222211 123333333333334445688999
Q ss_pred HHHHHHhccCchHHHHHHHHhcC----cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHH-HHhh
Q 001796 658 LRALFRICKSEAELVKIAVVKAN----GVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEAL-VGFL 732 (1012)
Q Consensus 658 l~aL~~L~~~~~~~~~~~i~~~g----~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~L-v~lL 732 (1012)
+.+|++-+.+- +..+..++ .++...+..+.++.+++.+|..+|..+..-.-.-.. ... ..++-.| ...+
T Consensus 199 L~aL~dsl~fv----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~-~ym-E~aL~alt~~~m 272 (858)
T COG5215 199 LKALMDSLMFV----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQ-SYM-ENALAALTGRFM 272 (858)
T ss_pred HHHHHHHHHHH----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHh
Confidence 99998843321 11111111 234455667778899999999888776432111111 111 1222222 2334
Q ss_pred cCCCchHHHHHHHHHHhccCCCCHHHHHHH--------------H--hhccHHHHHHHhcCCCh-------hHHHHHHHH
Q 001796 733 ENDAKHDVQMAAAGLLANLPKSELSLTMKL--------------I--ELDGLNAIINILKSGTM-------EAKENALSA 789 (1012)
Q Consensus 733 ~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l--------------~--~~g~i~~Lv~lL~~~~~-------~~~~~a~~a 789 (1012)
++. ++++...|..--+-++..+.+..-.+ . -..++|.|+.||...++ ..-..|...
T Consensus 273 ks~-nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sC 351 (858)
T COG5215 273 KSQ-NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSC 351 (858)
T ss_pred cCc-chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHH
Confidence 444 55665555543333332111111111 1 13478999999976322 244555555
Q ss_pred HHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCc
Q 001796 790 LFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGI 869 (1012)
Q Consensus 790 L~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~ 869 (1012)
|.-++..-. ..+.+. ++.-+-+-+++.+..-++.|+.|++.. .|+.
T Consensus 352 Lqlfaq~~g----d~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSv----------------------------m~gp- 397 (858)
T COG5215 352 LQLFAQLKG----DKIMRP-VLGFVEQNIRSESWANREAAVMAFGSV----------------------------MHGP- 397 (858)
T ss_pred HHHHHHHhh----hHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhh----------------------------hcCc-
Confidence 555543210 112221 333334556677888999999999986 2221
Q ss_pred cCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHH-hc--cCChhhHhHH
Q 001796 870 CSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEI-LT--WGTDSLKEEA 946 (1012)
Q Consensus 870 ~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~l-l~--s~~~~~~~~a 946 (1012)
|..- .-.++ ..++|.+..+..+..-.+...++++++.+++. ....|...|-++..+.- +. -++|....++
T Consensus 398 ~~~~-lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~-----va~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 398 CEDC-LTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH-----VAMIISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred cHHH-HHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH-----HHHhcCccccccHHHHHHHhhhhccchHHhhh
Confidence 2100 01122 56788888888777777888899999999863 33445555555554442 21 3578888899
Q ss_pred HHHHHHHhch
Q 001796 947 LGFLEKVFMS 956 (1012)
Q Consensus 947 ~~aL~~l~~~ 956 (1012)
.|...++..+
T Consensus 471 sw~~~nlv~h 480 (858)
T COG5215 471 SWRKENLVDH 480 (858)
T ss_pred HHHHHhHHHh
Confidence 9999999887
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.03 E-value=0.0037 Score=72.43 Aligned_cols=415 Identities=13% Similarity=0.102 Sum_probs=226.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHH-----HHHHhcccccch
Q 001796 463 GILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMM-----KALLSMELVDSN 537 (1012)
Q Consensus 463 ~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~-----~aL~~Ls~~~~~ 537 (1012)
++..+++=..++|.+.+.....++...|..+ ..-........+|.+....... +-|. ..|... ..+-
T Consensus 637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~-Gv~~~y~r~dilp~ff~~fw~r-----rmA~drr~ykqlv~t--tv~i 708 (1172)
T KOG0213|consen 637 VMLILIREFGSPDEEMKKIVLKVVKQCCATD-GVEPAYIRFDILPEFFFSFWGR-----RMALDRRNYKQLVDT--TVEI 708 (1172)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhccc-CCCHHHHhhhhhHHHHhhhhhh-----hhhccccchhhHHHH--HHHH
Confidence 3455556667889999988888888887533 2223333445556655544321 1111 000000 0111
Q ss_pred hhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcC----CC-chHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHH
Q 001796 538 LELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSG----CS-KNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEIL 612 (1012)
Q Consensus 538 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~----~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L 612 (1012)
..+++....|..++.-++++.+..++-.+.+..++.. .+ +.+ .+...+..+.-.++..+....+.-.+..++
T Consensus 709 a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~dider---leE~lidgil~Afqeqtt~d~vml~gfg~V 785 (1172)
T KOG0213|consen 709 AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDER---LEERLIDGILYAFQEQTTEDSVMLLGFGTV 785 (1172)
T ss_pred HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHH---HHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence 2233334445555666677666666555555544432 11 111 111223344444444433332222222222
Q ss_pred HHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHH-HHHHHHhcCcHHHHHHhhcC
Q 001796 613 EKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAEL-VKIAVVKANGVSLILSLLDD 691 (1012)
Q Consensus 613 ~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~-~~~~i~~~g~v~~Lv~ll~~ 691 (1012)
.|--. ++. .-....++...+..|++.+ ++++++|+..+..++.--... --+.+...|. .|.+.+..
T Consensus 786 ~~~lg-~r~--------kpylpqi~stiL~rLnnks--a~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylge 852 (1172)
T KOG0213|consen 786 VNALG-GRV--------KPYLPQICSTILWRLNNKS--AKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGE 852 (1172)
T ss_pred HHHHh-hcc--------ccchHHHHHHHHHHhcCCC--hhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCc
Confidence 22111 000 0112345666677777644 679999999888775411100 0133444443 47788888
Q ss_pred CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHH---HHHHHhhccH
Q 001796 692 TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSL---TMKLIELDGL 768 (1012)
Q Consensus 692 ~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~---~~~l~~~g~i 768 (1012)
..+++.-..+++++.+....+-.... ---.+.+|.|.-+|++. ...++++....+..++...++. +.++. +-
T Consensus 853 eypEvLgsILgAikaI~nvigm~km~-pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR---Ic 927 (1172)
T KOG0213|consen 853 EYPEVLGSILGAIKAIVNVIGMTKMT-PPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR---IC 927 (1172)
T ss_pred ccHHHHHHHHHHHHHHHHhccccccC-CChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HH
Confidence 89998888887777765442211110 01147789999999887 6788888888887777765542 33332 23
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCC
Q 001796 769 NAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPE 848 (1012)
Q Consensus 769 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~ 848 (1012)
--|+++|++.+-.++++|..++..++..-.|+ +++..|++-|+...-.-|.-..-|++-.++
T Consensus 928 feLlelLkahkK~iRRaa~nTfG~IakaIGPq--------dVLatLlnnLkvqeRq~RvcTtvaIaIVaE---------- 989 (1172)
T KOG0213|consen 928 FELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ--------DVLATLLNNLKVQERQNRVCTTVAIAIVAE---------- 989 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH--------HHHHHHHhcchHHHHHhchhhhhhhhhhhh----------
Confidence 34778888888899999999999887642232 234444444443322222222223333221
Q ss_pred CCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCc
Q 001796 849 SAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAI 928 (1012)
Q Consensus 849 ~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v 928 (1012)
.|.+ -.++|.|..=-+.++..|+...+.+|+.+..- ..+-+.+.|.. ..
T Consensus 990 --------------------~c~p--------FtVLPalmneYrtPe~nVQnGVLkalsf~Fey-igemskdYiya--v~ 1038 (1172)
T KOG0213|consen 990 --------------------TCGP--------FTVLPALMNEYRTPEANVQNGVLKALSFMFEY-IGEMSKDYIYA--VT 1038 (1172)
T ss_pred --------------------hcCc--------hhhhHHHHhhccCchhHHHHhHHHHHHHHHHH-HHHHhhhHHHH--hh
Confidence 1110 13566666666667788999999999888752 11334444543 45
Q ss_pred hHHHHHhccCChhhHhHHHHHHHHHhc
Q 001796 929 KPTLEILTWGTDSLKEEALGFLEKVFM 955 (1012)
Q Consensus 929 ~~L~~ll~s~~~~~~~~a~~aL~~l~~ 955 (1012)
|.|.+.|.+.++.-|.-|+.++.++..
T Consensus 1039 PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 1039 PLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 666667777777777777777777764
No 78
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00051 Score=77.35 Aligned_cols=356 Identities=17% Similarity=0.178 Sum_probs=205.0
Q ss_pred hhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCcc
Q 001796 542 GKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIK 621 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~ 621 (1012)
.-++.+|+.+..+++.|..++..|+..|+|++....+.....-..+...+-++....+.. ...+++.|-.|-.+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~---V~~~aeLLdRLikd--- 154 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQN---VRGGAELLDRLIKD--- 154 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccc---cccHHHHHHHHHHH---
Confidence 446788999999999999999999999999986444333223233334444544443322 25566666666542
Q ss_pred ceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHH
Q 001796 622 FLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAI 701 (1012)
Q Consensus 622 ~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~ 701 (1012)
++.+........++++-|-.-+...+ +..|...+.-|.-|-.-|+-.....+ ....+.|..+|.+++++++.-+-
T Consensus 155 -IVte~~~tFsL~~~ipLL~eriy~~n--~~tR~flv~Wl~~Lds~P~~~m~~yl--~~~ldGLf~~LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 155 -IVTESASTFSLPEFIPLLRERIYVIN--PMTRQFLVSWLYVLDSVPDLEMISYL--PSLLDGLFNMLSDSSDEVRTLTD 229 (675)
T ss_pred -hccccccccCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHhcCCcHHHHhcc--hHHHHHHHHHhcCCcHHHHHHHH
Confidence 12222223344556666655555544 44677777777777555552211111 13456788999999999997766
Q ss_pred HHHHH----hccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcC
Q 001796 702 NLLFL----FSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKS 777 (1012)
Q Consensus 702 ~~L~~----ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~ 777 (1012)
.++.. +... |... .-...++.++.-+.++ ++..|..|..-|..+..-.+. .-...-.|++..++.++.+
T Consensus 230 t~l~~fL~eI~s~-P~s~----d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~g~-~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 230 TLLSEFLAEIRSS-PSSM----DYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIPGR-DLLLYLSGILTAILPCLSD 302 (675)
T ss_pred HHHHHHHHHHhcC-cccc----CcccchhhccccccCC-cHHHHHHHHHHHHHHhcCCCc-chhhhhhhhhhhcccCCCC
Confidence 55444 3322 3221 2245677777777766 566776665444443332221 1112235556666666655
Q ss_pred CCh-hHHHHHHH---HHHhccCCCCHHHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcc
Q 001796 778 GTM-EAKENALS---ALFRFTDPTNLEAQRNVVER-GVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGC 852 (1012)
Q Consensus 778 ~~~-~~~~~a~~---aL~~Ls~~~~~~~~~~i~~~-g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~ 852 (1012)
..+ .+++.+.. .|..+... +..... ++. ..+..|...+.+...+.|..+..=+..+-...
T Consensus 303 ~e~~~i~~~a~~~n~~l~~l~s~--~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~------------ 367 (675)
T KOG0212|consen 303 TEEMSIKEYAQMVNGLLLKLVSS--ERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA------------ 367 (675)
T ss_pred CccccHHHHHHHHHHHHHHHHhh--hhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC------------
Confidence 433 35554433 23344332 111111 222 25788888888888888888866555552211
Q ss_pred cccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHH
Q 001796 853 WCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTL 932 (1012)
Q Consensus 853 ~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~ 932 (1012)
+|. .-.-.....+.|+.-|.+.+++|+..++..+++++.++..+..++. +..|+
T Consensus 368 --------------p~q------l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~f------l~sLL 421 (675)
T KOG0212|consen 368 --------------PGQ------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKF------LLSLL 421 (675)
T ss_pred --------------cch------hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHH------HHHHH
Confidence 110 1111245667889999999999999999999999986332222111 22344
Q ss_pred HHhccCChhhHhHHHHHHHHHhch
Q 001796 933 EILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 933 ~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
++.....--+..++..++.++|..
T Consensus 422 ~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 422 EMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred HHHhhhhHHHHhhhhHHHHHHHHH
Confidence 444455555666777777777764
No 79
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.02 E-value=0.00075 Score=77.08 Aligned_cols=242 Identities=19% Similarity=0.124 Sum_probs=160.8
Q ss_pred ChHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhH
Q 001796 462 SGILFLVTLIK-GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLEL 540 (1012)
Q Consensus 462 g~i~~Lv~lL~-~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 540 (1012)
.+++.++..|. .++.+.+..++..+... + ...+++.|+..|.+.++.++..++.+|+.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~---------- 112 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ---E--------DALDLRSVLAVLQAGPEGLCAGIQAALGW---------- 112 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc---C--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhc----------
Confidence 57888888885 55566666555544322 1 12238889999998888899999999974
Q ss_pred hhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCc
Q 001796 541 LGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGI 620 (1012)
Q Consensus 541 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~ 620 (1012)
+...++.+.|+.+|.+.++.++..++.++...- ....+.++.+|++.+
T Consensus 113 i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d--------------------- 160 (410)
T TIGR02270 113 LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHED--------------------- 160 (410)
T ss_pred CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCC---------------------
Confidence 345677889999999888888888887776611 123456666665332
Q ss_pred cceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHH
Q 001796 621 KFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIA 700 (1012)
Q Consensus 621 ~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a 700 (1012)
+.++..|+++|..+.. ...++.|...+.+.++.++..|
T Consensus 161 ------------------------------~~Vra~A~raLG~l~~------------~~a~~~L~~al~d~~~~VR~aA 198 (410)
T TIGR02270 161 ------------------------------ALVRAAALRALGELPR------------RLSESTLRLYLRDSDPEVRFAA 198 (410)
T ss_pred ------------------------------HHHHHHHHHHHHhhcc------------ccchHHHHHHHcCCCHHHHHHH
Confidence 3366777777666532 2334567777888899999999
Q ss_pred HHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCCh
Q 001796 701 INLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTM 780 (1012)
Q Consensus 701 ~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 780 (1012)
+..+..+.. ..++..|+.+.... .......++.++.... ++ .+++.|..+++...
T Consensus 199 ~~al~~lG~------------~~A~~~l~~~~~~~-g~~~~~~l~~~lal~~--~~---------~a~~~L~~ll~d~~- 253 (410)
T TIGR02270 199 LEAGLLAGS------------RLAWGVCRRFQVLE-GGPHRQRLLVLLAVAG--GP---------DAQAWLRELLQAAA- 253 (410)
T ss_pred HHHHHHcCC------------HhHHHHHHHHHhcc-CccHHHHHHHHHHhCC--ch---------hHHHHHHHHhcChh-
Confidence 988866532 22344555533332 1223333333444331 22 35888888887644
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 781 EAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 781 ~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
+++.++.+|..+..+ ..++.|+..+.+. .++..|..++..++.
T Consensus 254 -vr~~a~~AlG~lg~p------------~av~~L~~~l~d~--~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 254 -TRREALRAVGLVGDV------------EAAPWCLEAMREP--PWARLAGEAFSLITG 296 (410)
T ss_pred -hHHHHHHHHHHcCCc------------chHHHHHHHhcCc--HHHHHHHHHHHHhhC
Confidence 899999999988554 2688999988754 489999999999843
No 80
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0051 Score=71.42 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=164.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-ccchhhHh
Q 001796 463 GILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL-VDSNLELL 541 (1012)
Q Consensus 463 ~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i 541 (1012)
.-+-++.+|++..+-+|..|+.+|..++-.-++. -.-.+|.|.+-|..+++.++-.|+..++.|+. ++.|.-.+
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc
Confidence 3566788888888899999999998887433322 22357888999988899999999999999988 67766554
Q ss_pred hhcCChHHHHhhhcCC-ChhHHHHHHHHHHHhcCC-CchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHH--Hhhc
Q 001796 542 GKEGIIPPLLGLVGSG-NFQSKELSLSVLVKLSGC-SKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILE--KLSS 617 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~--nLa~ 617 (1012)
-|.+.++|.+. |-=+.-.-+....+|+-. |.-.. ..+++|.+++.+..-.. +...|..++. +++.
T Consensus 220 -----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmS-LlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 220 -----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMS-LLYECVNTVVAVSMSS 288 (877)
T ss_pred -----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHH-HHHHHHHHheeehhcc
Confidence 38888887543 333445566777777643 22222 25788888887753222 2233333332 2221
Q ss_pred cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHH
Q 001796 618 DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVR 697 (1012)
Q Consensus 618 ~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~ 697 (1012)
| .........-.+..|-.++..+ ++.++.-++-++.-+....+..+ ++- -+.++.+|.+.++.+|
T Consensus 289 -g------~~d~~asiqLCvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~~V-qa~-----kdlIlrcL~DkD~SIR 353 (877)
T KOG1059|consen 289 -G------MSDHSASIQLCVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPKAV-QAH-----KDLILRCLDDKDESIR 353 (877)
T ss_pred -C------CCCcHHHHHHHHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHHHH-HHh-----HHHHHHHhccCCchhH
Confidence 0 0011111233466666666664 46699999999999987443321 111 1567889999999999
Q ss_pred HHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHH-HHHHHhccCCCCHHHHHHHHhhc-cHHHHHHHh
Q 001796 698 EIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMA-AAGLLANLPKSELSLTMKLIELD-GLNAIINIL 775 (1012)
Q Consensus 698 ~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~-Aa~aL~nL~~~~~~~~~~l~~~g-~i~~Lv~lL 775 (1012)
..|+.+|.-+... ++..++ +..|+.-+...++...+.. .-.++.-++.++. +.+.+-. .+..|+++-
T Consensus 354 lrALdLl~gmVsk--kNl~eI------Vk~LM~~~~~ae~t~yrdell~~II~iCS~snY---~~ItdFEWYlsVlveLa 422 (877)
T KOG1059|consen 354 LRALDLLYGMVSK--KNLMEI------VKTLMKHVEKAEGTNYRDELLTRIISICSQSNY---QYITDFEWYLSVLVELA 422 (877)
T ss_pred HHHHHHHHHHhhh--hhHHHH------HHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh---hhhhhHHHHHHHHHHHH
Confidence 9999999876544 444433 4566654433323333333 3445554444332 2233221 345566664
Q ss_pred c
Q 001796 776 K 776 (1012)
Q Consensus 776 ~ 776 (1012)
+
T Consensus 423 ~ 423 (877)
T KOG1059|consen 423 R 423 (877)
T ss_pred h
Confidence 4
No 81
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.96 E-value=0.0062 Score=72.69 Aligned_cols=439 Identities=15% Similarity=0.109 Sum_probs=244.7
Q ss_pred CChhhHHHHHHHHHHhhccCCchHHhhhhh-hhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCc
Q 001796 428 DPSISLAAVKLLYELMQDRSGWNVAVCRKL-SQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWY 506 (1012)
Q Consensus 428 ~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i-~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i 506 (1012)
|.++++.|+..+..+...-. ... ..-..+++.+++-|+ ++-.+-.|+.++..++...-..-..-.-..++
T Consensus 583 DqeVkeraIscmgq~i~~fg-------D~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il 653 (1233)
T KOG1824|consen 583 DQEVKERAISCMGQIIANFG-------DFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEIL 653 (1233)
T ss_pred cHHHHHHHHHHHHHHHHHHh-------hhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHH
Confidence 34667777766665533211 111 122456777777775 45678888888888875332221122234567
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccccch-hhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHc
Q 001796 507 KPLIDRIIQGAESSRILMMKALLSMELVDSN-LELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAA 585 (1012)
Q Consensus 507 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 585 (1012)
+.+...++......+...+.++-.|..+... ...-.-.-++..+..+++..+..+.+.|..+|..+...+.....-+..
T Consensus 654 ~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~ 733 (1233)
T KOG1824|consen 654 PELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISN 733 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhh
Confidence 8888888877777777777777666553211 111111223334445556667778899999999998877666655666
Q ss_pred CChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChh---hHHHHHHHHH
Q 001796 586 GGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYN---VRKPALRALF 662 (1012)
Q Consensus 586 g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~---~~~~al~aL~ 662 (1012)
-.++.++.+++++--.- .|...+.++.. .++.... ...+ ...++.++...-.++. +.++|...+.
T Consensus 734 ~iL~~ii~ll~Spllqg----~al~~~l~~f~----alV~t~~---~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA 801 (1233)
T KOG1824|consen 734 PILDEIIRLLRSPLLQG----GALSALLLFFQ----ALVITKE---PDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIA 801 (1233)
T ss_pred hhHHHHHHHhhCccccc----hHHHHHHHHHH----HHHhcCC---CCcc-HHHHHHHHcCCcccccccchhHHHHHHHH
Confidence 78899999999875432 22222222221 0000000 0011 4555555554221111 2233322222
Q ss_pred ----Hhcc-CchHHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCC
Q 001796 663 ----RICK-SEAELVKIAVVKANGVSLILSLLDDT--DSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEND 735 (1012)
Q Consensus 663 ----~L~~-~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~ 735 (1012)
.|+. .++. . .. ....++.=+.++ +..++.-|+-.|+-+.++.+.. ...+.-..++..+.++
T Consensus 802 ~cvA~Lt~~~~~~-s-~s-----~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s-----~~~e~~~~iieaf~sp 869 (1233)
T KOG1824|consen 802 KCVAALTCACPQK-S-KS-----LATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLS-----PQNELKDTIIEAFNSP 869 (1233)
T ss_pred HHHHHHHHhcccc-c-hh-----HHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCC-----cchhhHHHHHHHcCCC
Confidence 2222 1111 0 01 112333333333 4456666666666665542211 1223344556677777
Q ss_pred CchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHH
Q 001796 736 AKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLV 815 (1012)
Q Consensus 736 ~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv 815 (1012)
..+++.+|+-||++++.++-. ..+|-+++.+.+. +.-|.--...|..+-.....+ .....++.+.
T Consensus 870 -~edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~svd-----~~~~~v~~IW 934 (1233)
T KOG1824|consen 870 -SEDVKSAASYALGSLAVGNLP--------KYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASVD-----GLKPYVEKIW 934 (1233)
T ss_pred -hHHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccc-----hhhhhHHHHH
Confidence 778999999999999986553 2477777776543 222222222222221111111 0112334444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhc
Q 001796 816 NLLQ----IGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLL 891 (1012)
Q Consensus 816 ~lL~----s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL 891 (1012)
.+|- ...+..|...+.+|+.| |.+.. ...++.|-..+
T Consensus 935 ~lL~k~cE~~eegtR~vvAECLGkL--------------------------~l~ep-------------esLlpkL~~~~ 975 (1233)
T KOG1824|consen 935 ALLFKHCECAEEGTRNVVAECLGKL--------------------------VLIEP-------------ESLLPKLKLLL 975 (1233)
T ss_pred HHHHHhcccchhhhHHHHHHHhhhH--------------------------HhCCh-------------HHHHHHHHHHh
Confidence 4443 23445788888899888 22211 34678888889
Q ss_pred cCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 892 QGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 892 ~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
.++.......++.|..-...| .+.-.+.+.. .-+.....++++++.++|+.|..++.....+
T Consensus 976 ~S~a~~~rs~vvsavKfsisd--~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahN 1037 (1233)
T KOG1824|consen 976 RSEASNTRSSVVSAVKFSISD--QPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHN 1037 (1233)
T ss_pred cCCCcchhhhhhheeeeeecC--CCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHcc
Confidence 988888887788777666665 3444444443 4566788889999999999999999888865
No 82
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.96 E-value=7.3e-06 Score=62.18 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=39.1
Q ss_pred ecccccccCCCceecC-CCccccHHHHHHHHhcCCCCCCCCCcc
Q 001796 263 KCRITGTVMMDPVSLY-TGTTCERAAIEAWLDRREKTDPETGVV 305 (1012)
Q Consensus 263 ~cpi~~~~m~dPv~~~-~g~t~~r~~i~~~~~~~~~~cp~~~~~ 305 (1012)
.||||++.+.+|+.+. |||+|++.|+..|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999886 999999999999999877889999875
No 83
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.0055 Score=64.72 Aligned_cols=361 Identities=16% Similarity=0.157 Sum_probs=222.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhh----HHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchh
Q 001796 463 GILFLVTLIKGPVRESAECAEKILQQLFDVDEEN----FCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNL 538 (1012)
Q Consensus 463 ~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~ 538 (1012)
..|.|-.=|..++..++.-++..+.-+...++.| ...++++|.++.++..+-..+.++-..|...+..++..+..-
T Consensus 83 lmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 83 LMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 3445555555677788888888777666655533 344568999999999999889999999999999999988888
Q ss_pred hHhhhcCChHHH--HhhhcCCChhHHHHHHHHHHHhcC-CCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001796 539 ELLGKEGIIPPL--LGLVGSGNFQSKELSLSVLVKLSG-CSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKL 615 (1012)
Q Consensus 539 ~~i~~~g~i~~L--v~lL~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nL 615 (1012)
..|........+ +++-...+.-++-.....+..+.+ .++.....-.+|.+..|..-|+.. .+.-+...|.+....|
T Consensus 163 eaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianciElvteL 241 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANCIELVTEL 241 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhHHHHHHHH
Confidence 888877766654 333333345566666677766664 566667777889888887777664 3444557888888888
Q ss_pred hc--cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHH--HHHHHHhc--CcHHHHHHhh
Q 001796 616 SS--DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAEL--VKIAVVKA--NGVSLILSLL 689 (1012)
Q Consensus 616 a~--~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~--~~~~i~~~--g~v~~Lv~ll 689 (1012)
+. .+++. +. .++.+..+..++...+++|--+-.++.....+-....-. .-+++.+. -+|+...++.
T Consensus 242 aeteHgref-la-------QeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmi 313 (524)
T KOG4413|consen 242 AETEHGREF-LA-------QEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMI 313 (524)
T ss_pred HHHhhhhhh-cc-------hhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhh
Confidence 86 33332 22 345788888888877777644444554443332111000 00122221 2345556777
Q ss_pred cCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCC--ChHHHHHhhcCCCchHHHHHHHHHHhccCC---CCHH-------
Q 001796 690 DDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPK--RLEALVGFLENDAKHDVQMAAAGLLANLPK---SELS------- 757 (1012)
Q Consensus 690 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~--~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~---~~~~------- 757 (1012)
+..++.+++.|..+++.+.... ++. +.+.+.| ..+.++.-.-+.+....+..+..+|.+++. -.++
T Consensus 314 EmnDpdaieaAiDalGilGSnt-eGa-dlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgka 391 (524)
T KOG4413|consen 314 EMNDPDAIEAAIDALGILGSNT-EGA-DLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKA 391 (524)
T ss_pred hcCCchHHHHHHHHHHhccCCc-chh-HHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHH
Confidence 7789999999999999886552 222 2233333 233333322222233456666666666553 2221
Q ss_pred ---HHHHHHhh-------ccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHH-HHHHHcCCHHHHHHHHhcC---CH
Q 001796 758 ---LTMKLIEL-------DGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQ-RNVVERGVYPLLVNLLQIG---SI 823 (1012)
Q Consensus 758 ---~~~~l~~~-------g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~-~~i~~~g~i~~Lv~lL~s~---~~ 823 (1012)
.+-.+.++ .-+..+...++.+.++++-.+..++..++.. |=.+ ..+.+.|+|..+++-.... ..
T Consensus 392 eerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq--PWalkeifakeefieiVtDastEhaKaak 469 (524)
T KOG4413|consen 392 EERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ--PWALKEIFAKEEFIEIVTDASTEHAKAAK 469 (524)
T ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC--cHHHHHHhcCccceeeecccchhhHHHHH
Confidence 11111121 2233455667778889999999999998774 3333 3444567777777654433 23
Q ss_pred HHHHHHHHHHHhh
Q 001796 824 TAKARAAALIGTL 836 (1012)
Q Consensus 824 ~vk~~Aa~aL~nL 836 (1012)
+.|-..+.|+.+-
T Consensus 470 dAkYeccKAiaea 482 (524)
T KOG4413|consen 470 DAKYECCKAIAEA 482 (524)
T ss_pred HHHHHHHHHHHHH
Confidence 4666777777763
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.95 E-value=0.00047 Score=78.70 Aligned_cols=118 Identities=14% Similarity=-0.034 Sum_probs=79.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHH
Q 001796 682 VSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMK 761 (1012)
Q Consensus 682 v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~ 761 (1012)
+..|+..+.+.++.++..+...|..+- .....+.|+.+|++. ++.++..++.++..-..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~------------~~~a~~~L~~~L~~~-~p~vR~aal~al~~r~~-------- 146 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG------------GRQAEPWLEPLLAAS-EPPGRAIGLAALGAHRH-------- 146 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC------------chHHHHHHHHHhcCC-ChHHHHHHHHHHHhhcc--------
Confidence 566777777777777777777776542 234456677777655 55666666666654221
Q ss_pred HHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 762 LIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 762 l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
...+.+..+|++.++.++..|+.+|..+... ..+|.|...+.+.++.||..|+.++..+
T Consensus 147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 147 ----DPGPALEAALTHEDALVRAAALRALGELPRR------------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 2356777777777778888888887777442 2556677777777888888888877665
No 85
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.95 E-value=3.6e-06 Score=63.63 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=33.9
Q ss_pred ecccccccCC---CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 001796 263 KCRITGTVMM---DPVSLYTGTTCERAAIEAWLDRREKTDPETG 303 (1012)
Q Consensus 263 ~cpi~~~~m~---dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~ 303 (1012)
.||||++-|. +++.++|||.|.++||.+|+.. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 4999999993 5667799999999999999987 56999985
No 86
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=5.3e-06 Score=93.93 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=59.4
Q ss_pred CCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHHcc
Q 001796 259 LNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKELNY 329 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~~~ 329 (1012)
-+++.||||++.|++|++++|||||||.||..|+. +...||.|+. . ...+.||..+.++++.....+.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~-~~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-P-SRNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-c-hhccCccHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999998 6678999996 3 2377899999999988887754
No 87
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.94 E-value=5.3e-06 Score=84.51 Aligned_cols=66 Identities=21% Similarity=0.193 Sum_probs=57.5
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHHH
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKEL 327 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~~ 327 (1012)
-++|-||.+.++-|++++||||||--||..++.. +..||.|+.+.....+.-|.-++..++.+..-
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~ 90 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARN 90 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhc
Confidence 5899999999999999999999999999999976 88999999998877788777777776666543
No 88
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0031 Score=66.47 Aligned_cols=370 Identities=15% Similarity=0.153 Sum_probs=206.7
Q ss_pred HhcCChHHHHHHHHHHHhcccccc-h----hhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCC
Q 001796 513 IIQGAESSRILMMKALLSMELVDS-N----LELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGG 587 (1012)
Q Consensus 513 L~~~~~~~~~~a~~aL~~Ls~~~~-~----~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~ 587 (1012)
|..++..+|..++..++.+..+.+ | ...+++.|..|.++..+...|.++.+.|...+..++..+..-..+.++..
T Consensus 91 LiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSel 170 (524)
T KOG4413|consen 91 LIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESEL 170 (524)
T ss_pred ccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhccccc
Confidence 344567788888877766554322 2 34466899999999999999999999999999999999888777777665
Q ss_pred hHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccC
Q 001796 588 IPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKS 667 (1012)
Q Consensus 588 i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~ 667 (1012)
...+- +.||+..+. .-.+...+..+..+.+-
T Consensus 171 lDdlh-------------------lrnlaakcn------------------------------diaRvRVleLIieifSi 201 (524)
T KOG4413|consen 171 LDDLH-------------------LRNLAAKCN------------------------------DIARVRVLELIIEIFSI 201 (524)
T ss_pred CChHH-------------------HhHHHhhhh------------------------------hHHHHHHHHHHHHHHhc
Confidence 44321 112221000 00223333333333332
Q ss_pred chHHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCC-CchHHHHHHH
Q 001796 668 EAELVKIAVVKANGVSLILSLLDD-TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEND-AKHDVQMAAA 745 (1012)
Q Consensus 668 ~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~~~~~Aa 745 (1012)
++. ........|.+..|..-+.. .+.-++.+++.+...++.. +.-.+.+.+.|.|..+.+++... +++-..-.++
T Consensus 202 Spe-saneckkSGLldlLeaElkGteDtLVianciElvteLaet--eHgreflaQeglIdlicnIIsGadsdPfekfral 278 (524)
T KOG4413|consen 202 SPE-SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET--EHGREFLAQEGLIDLICNIISGADSDPFEKFRAL 278 (524)
T ss_pred CHH-HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH--hhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH
Confidence 222 23455567777777666665 5667888899988888754 33344567789999999988543 2333333333
Q ss_pred HHHh----ccCCCCHHHHHHHHhh--ccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHh
Q 001796 746 GLLA----NLPKSELSLTMKLIEL--DGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQ 819 (1012)
Q Consensus 746 ~aL~----nL~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~ 819 (1012)
.... ++..-+. .-+++.+. -++..-.+.+...++..++.|+.++..+.... +-...+.+ -+-|..-.++-
T Consensus 279 mgfgkffgkeaimdv-seeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt--eGadlllk-Tgppaaehlla 354 (524)
T KOG4413|consen 279 MGFGKFFGKEAIMDV-SEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT--EGADLLLK-TGPPAAEHLLA 354 (524)
T ss_pred HHHHHHhcchHHhhc-CHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc--chhHHHhc-cCChHHHHHHH
Confidence 3332 2221110 01122211 13344455667788899999999999997753 32333333 34444444443
Q ss_pred ---cCCHH-HHHHHHHHHHhhccCCcCCc-cCCCCCcccccCCCCCccccccCCccCCCcchhhhhc---CcchHHHHhc
Q 001796 820 ---IGSIT-AKARAAALIGTLSTSSPKFT-DMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKA---NALPHLVKLL 891 (1012)
Q Consensus 820 ---s~~~~-vk~~Aa~aL~nLs~~~~~l~-~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~---gai~~Lv~lL 891 (1012)
+.+.. -+..+..+|.+++.....-+ ++..-+....+ .|.+... ..+. .-...+..++
T Consensus 355 rafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerl------rclifda---------aaqstkldPleLFlgil 419 (524)
T KOG4413|consen 355 RAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERL------RCLIFDA---------AAQSTKLDPLELFLGIL 419 (524)
T ss_pred HHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHH------HHHHHHH---------HhhccCCChHHHHHHHH
Confidence 23333 35667788888864222000 00000000000 1111110 1111 2233355667
Q ss_pred cCCChHHHHHHHHHHHHHhhccchhhhh-HHhhhcCCchHHHHHhcc---CChhhHhHHHHHHHHHhch
Q 001796 892 QGRVHATAYEAIQTLSTLVQEGCQQRGV-NVLHQEEAIKPTLEILTW---GTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 892 ~~~~~~v~~~Al~aL~~L~~~~~~~~~~-~~i~~~~~v~~L~~ll~s---~~~~~~~~a~~aL~~l~~~ 956 (1012)
+.+.+++..+++..+..++.. +-.. ..+.+.+-|....+-... ..-+.+.+++.++.+-+..
T Consensus 420 qQpfpEihcAalktfTAiaaq---PWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaeaflc 485 (524)
T KOG4413|consen 420 QQPFPEIHCAALKTFTAIAAQ---PWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEAFLC 485 (524)
T ss_pred cCCChhhHHHHHHHHHHHHcC---cHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999974 4444 445665555555443221 1223455666666554443
No 89
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0057 Score=72.05 Aligned_cols=299 Identities=15% Similarity=0.147 Sum_probs=169.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCC
Q 001796 467 LVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGI 546 (1012)
Q Consensus 467 Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~ 546 (1012)
|..-|++++.-+.--|..+|.++++ ++- .....|.+.++|+..++-+|+.|+.+...+-.-..+-. ...
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s--~Em-----ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~----e~f 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICS--PEM-----ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV----EHF 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCC--HHH-----hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH----HHh
Confidence 3444566777788889999999973 222 23456778888999999999999998887655322222 234
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHHhcCC-CchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceec
Q 001796 547 IPPLLGLVGSGNFQSKELSLSVLVKLSGC-SKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVD 625 (1012)
Q Consensus 547 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~ 625 (1012)
++...++|.+.+.-+...++..+..+|.. +++-....+ .++.+|..|+.- ...+....-+
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l-----------------~~~~yspeyd 241 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQL-----------------TNSGYSPEYD 241 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHH-----------------hcCCCCCccC
Confidence 67788888887877777888888888853 444333333 566677666642 1100000011
Q ss_pred ccCCc-cchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHH--HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHH
Q 001796 626 EKGNR-LELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAEL--VKIAVVKANGVSLILSLLDDTDSEVREIAIN 702 (1012)
Q Consensus 626 ~~g~~-l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~--~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~ 702 (1012)
.+|.. -..+--+-.+++++-.++ ++..+.-..+|..++...+.. +-.+|. ...|..++.+ .++..++..|+.
T Consensus 242 v~gi~dPFLQi~iLrlLriLGq~d--~daSd~M~DiLaqvatntdsskN~GnAIL-YE~V~TI~~I--~~~~~Lrvlain 316 (866)
T KOG1062|consen 242 VHGISDPFLQIRILRLLRILGQND--ADASDLMNDILAQVATNTDSSKNAGNAIL-YECVRTIMDI--RSNSGLRVLAIN 316 (866)
T ss_pred ccCCCchHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHhc--cCCchHHHHHHH
Confidence 11110 001111233344443332 334455555555555432211 111111 1112222222 245567777777
Q ss_pred HHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhH
Q 001796 703 LLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEA 782 (1012)
Q Consensus 703 ~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~ 782 (1012)
+|+.+-.....+. +.=++..|...+..+ +. ++.++ =..+++.|++.+..+
T Consensus 317 iLgkFL~n~d~Ni-----rYvaLn~L~r~V~~d--------------------~~---avqrH--r~tIleCL~DpD~SI 366 (866)
T KOG1062|consen 317 ILGKFLLNRDNNI-----RYVALNMLLRVVQQD--------------------PT---AVQRH--RSTILECLKDPDVSI 366 (866)
T ss_pred HHHHHhcCCccce-----eeeehhhHHhhhcCC--------------------cH---HHHHH--HHHHHHHhcCCcHHH
Confidence 7765433312221 123444444444333 32 11111 235778899999999
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 783 KENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 783 ~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
|+.|...+..|....+. +. .+.-|+..|.+.+++.|...+.-+..+++
T Consensus 367 krralELs~~lvn~~Nv---~~-----mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 367 KRRALELSYALVNESNV---RV-----MVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHHhccccH---HH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999875322 22 45678888888899999888888877754
No 90
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.90 E-value=0.016 Score=67.35 Aligned_cols=466 Identities=15% Similarity=0.130 Sum_probs=220.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChH----HHHHHHHHHHhcccc-cchhh
Q 001796 465 LFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAES----SRILMMKALLSMELV-DSNLE 539 (1012)
Q Consensus 465 ~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~~~a~~aL~~Ls~~-~~~~~ 539 (1012)
..+-..|.+....++..++-+|..++...... .-+.+..++..|..|-.. .-..-+.+++.|.-. +..-.
T Consensus 556 ~ii~~gl~De~qkVR~itAlalsalaeaa~Py-----gie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya 630 (1172)
T KOG0213|consen 556 KIIEHGLKDEQQKVRTITALALSALAEAATPY-----GIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYA 630 (1172)
T ss_pred HHHHHhhcccchhhhhHHHHHHHHHHHhcCCc-----chHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHH
Confidence 33333444555567777777777776432211 123344555555544221 112223344444432 11122
Q ss_pred HhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCC------ChhHHHHHHHHHH
Q 001796 540 LLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHV------PSNIIVKCSEILE 613 (1012)
Q Consensus 540 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~------~~~~~~~a~~~L~ 613 (1012)
......++-.+++=..++|.++++-.+.++..+|..+..-........+|.+....-.... -.++.+.+..+-.
T Consensus 631 ~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~ 710 (1172)
T KOG0213|consen 631 SYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA 710 (1172)
T ss_pred HHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH
Confidence 2222334445555567788899999999999999755444444444555554433322100 0011111111111
Q ss_pred Hhhcc-CccceecccC-----CccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchH-H-----HHHHHH-hcC
Q 001796 614 KLSSD-GIKFLVDEKG-----NRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAE-L-----VKIAVV-KAN 680 (1012)
Q Consensus 614 nLa~~-~~~~~~~~~g-----~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~-~-----~~~~i~-~~g 680 (1012)
.+.++ -....+.+.. ..-...+.+..++..+...+-+....+.-...+++--+.... . .-..+. ..|
T Consensus 711 KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG 790 (1172)
T ss_pred HhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 11110 0000000000 000012334444444443333333333333322221111100 0 000111 112
Q ss_pred c---------HHHHHHhhcCCCHHHHHHHHHHHHHhccC---CCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHH
Q 001796 681 G---------VSLILSLLDDTDSEVREIAINLLFLFSHH---EPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLL 748 (1012)
Q Consensus 681 ~---------v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~---~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL 748 (1012)
+ +..++..|.++.+.+|+.|+.++..++.- .+++. .+..-|. .|..-|... .+++.-..+++|
T Consensus 791 ~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~--~m~~lGv--vLyEylgee-ypEvLgsILgAi 865 (1172)
T KOG0213|consen 791 GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEK--LMGHLGV--VLYEYLGEE-YPEVLGSILGAI 865 (1172)
T ss_pred hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHH--HHHHhhH--HHHHhcCcc-cHHHHHHHHHHH
Confidence 1 33455678888999999999888877532 11111 0111111 122333332 445544433433
Q ss_pred hccCCCCHHHHHHHH--hhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHH---HHHHHHcCCHHHHHHHHhcCCH
Q 001796 749 ANLPKSELSLTMKLI--ELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEA---QRNVVERGVYPLLVNLLQIGSI 823 (1012)
Q Consensus 749 ~nL~~~~~~~~~~l~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~---~~~i~~~g~i~~Lv~lL~s~~~ 823 (1012)
..+..... ...+. -.+.+|.|.-.|++....++++++..+..++.. .++. +.-+ .+---|+++|.+.+.
T Consensus 866 kaI~nvig--m~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr-gpE~v~aREWM---RIcfeLlelLkahkK 939 (1172)
T KOG0213|consen 866 KAIVNVIG--MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR-GPEYVSAREWM---RICFELLELLKAHKK 939 (1172)
T ss_pred HHHHHhcc--ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc-CcccCCHHHHH---HHHHHHHHHHHHHHH
Confidence 33322110 00011 246799999999999999999999999999875 2331 1111 123457888889899
Q ss_pred HHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHH
Q 001796 824 TAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAI 903 (1012)
Q Consensus 824 ~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al 903 (1012)
.+|.+|...++.+|. .-+. ..++..|++-|+. ++.-.
T Consensus 940 ~iRRaa~nTfG~Iak--------------------------aIGP------------qdVLatLlnnLkv-----qeRq~ 976 (1172)
T KOG0213|consen 940 EIRRAAVNTFGYIAK--------------------------AIGP------------QDVLATLLNNLKV-----QERQN 976 (1172)
T ss_pred HHHHHHHhhhhHHHH--------------------------hcCH------------HHHHHHHHhcchH-----HHHHh
Confidence 999999999988843 1010 2334444444432 22211
Q ss_pred HHHHHHhhccchhhhhHHhhhc----CCchHHHHHhccCChhhHhHHHHHHHHHhch-HhhHhhhcccccchhhhhhhhc
Q 001796 904 QTLSTLVQEGCQQRGVNVLHQE----EAIKPTLEILTWGTDSLKEEALGFLEKVFMS-KEMVDTYGSSARLLLVPLTSRN 978 (1012)
Q Consensus 904 ~aL~~L~~~~~~~~~~~~i~~~----~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~~l~~L~~~~ 978 (1012)
..-..++. ..+.+. ..+|.|++=.+-++..+|.-...+|+.+|.. .+....|--.- .++++ .++
T Consensus 977 RvcTtvaI--------aIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav-~Plle--DAl 1045 (1172)
T KOG0213|consen 977 RVCTTVAI--------AIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV-TPLLE--DAL 1045 (1172)
T ss_pred chhhhhhh--------hhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh-hHHHH--Hhh
Confidence 11111111 111111 2355555444456666787777777777753 22222221111 13222 245
Q ss_pred ccCCchHHHHHHHHHHHHHhcc
Q 001796 979 VHEDGSLERKAAKVLSLIERYS 1000 (1012)
Q Consensus 979 ~~~~~~~~~~Aa~~L~~L~~~~ 1000 (1012)
.+.|..-|+.|..+.+||.--+
T Consensus 1046 mDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1046 MDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred ccccHHHHHHHHHHHHHHhcCC
Confidence 5788888999999999997653
No 91
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.88 E-value=6.4e-05 Score=68.98 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=111.1
Q ss_pred ChHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhH
Q 001796 462 SGILFLVTLIK-GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLEL 540 (1012)
Q Consensus 462 g~i~~Lv~lL~-~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 540 (1012)
+-+..||.-.+ ..+.+.++....-|.|.+ .++.|...+.+..+++.+++.|...+...+..+...|+|+|.++.|...
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 55666666555 457789999999999997 6889999999999999999999999999999999999999999999999
Q ss_pred hhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCc-hHHHHHHcCChHHHHHHhhc
Q 001796 541 LGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSK-NRELISAAGGIPQVLELMFS 597 (1012)
Q Consensus 541 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~ 597 (1012)
|.+++++|.++..++++.......++.+|..|+.... .|..+. -|++++.+..
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell----~p~Vv~~v~r 148 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL----SPAVVRTVQR 148 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc----cHHHHHHHHH
Confidence 9999999999999999999999999999999986533 244443 3555655544
No 92
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0028 Score=75.68 Aligned_cols=338 Identities=16% Similarity=0.170 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHh----hcCCcHHHHHHHh-cCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHH
Q 001796 477 ESAECAEKILQQLFDVDEENFCRAA----KSGWYKPLIDRII-QGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLL 551 (1012)
Q Consensus 477 ~~~~~A~~~L~~La~~~~~~~~~i~----~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv 551 (1012)
+-..-+..+|.|+.+.+++--..+. --|.++.+...|. .+++.++..|+..+..+..+.++...++..|.+..|+
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHH
Confidence 3566788999999888875433332 3467788888886 4577899999999988888999999999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhcc---CccceecccC
Q 001796 552 GLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSD---GIKFLVDEKG 628 (1012)
Q Consensus 552 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~---~~~~~~~~~g 628 (1012)
.+|.+ -|..++.++.+|+.|++.++-.....+.|++.-+..++...+.. +.+..++..|..|..+ |.+..+.--.
T Consensus 1820 ~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~-QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSD-QQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcH-HHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 99975 47789999999999999999888888999999888888776544 4568889999999873 2221110000
Q ss_pred C----cc-chhHHHHHHHHHHhccCCChhh------HHHHHHHHHHhcc--------Cc-------hH------------
Q 001796 629 N----RL-ELEPIVTNLLTLQQNFNSSYNV------RKPALRALFRICK--------SE-------AE------------ 670 (1012)
Q Consensus 629 ~----~l-~~~~~v~~Ll~ll~~~~~~~~~------~~~al~aL~~L~~--------~~-------~~------------ 670 (1012)
- .. ...+.-+..++.+..++..|++ +......+..+.. .+ +.
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~a 1977 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECA 1977 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcc
Confidence 0 00 0001113344555544433322 2222222222210 00 00
Q ss_pred ----HHHHHHHh------------cCcHHHHHHhhcCCCHH--HHHHHHHHH-HHhccCCCcchHHhhhcCCChHHHHHh
Q 001796 671 ----LVKIAVVK------------ANGVSLILSLLDDTDSE--VREIAINLL-FLFSHHEPEGVVEYLLKPKRLEALVGF 731 (1012)
Q Consensus 671 ----~~~~~i~~------------~g~v~~Lv~ll~~~~~~--v~~~a~~~L-~~ls~~~~~~~~~~l~~~~~i~~Lv~l 731 (1012)
-+|..+.+ .|.++.+++++...+++ .-+--..++ ..++.+ ....+.+-.-|.+|.++..
T Consensus 1978 VGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~h--P~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1978 VGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHH--PNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred cchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhC--cchhhhCCCccchHHHHHH
Confidence 01111111 11222333444433322 111111222 222223 3444555667999999987
Q ss_pred hcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCH
Q 001796 732 LENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVY 811 (1012)
Q Consensus 732 L~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i 811 (1012)
+.... ...-..|..+|-.|+. +.-..+++....++..++..++.. +....-|+.+|.++......++.....+.|.+
T Consensus 2056 m~~~n-~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLv 2132 (2235)
T KOG1789|consen 2056 MCLQN-TSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLV 2132 (2235)
T ss_pred HHhcC-CcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcH
Confidence 74431 1233567888888887 445677787777777788877643 23444788888887665456667778889999
Q ss_pred HHHHHHHhcC
Q 001796 812 PLLVNLLQIG 821 (1012)
Q Consensus 812 ~~Lv~lL~s~ 821 (1012)
|.|.++|...
T Consensus 2133 pyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2133 PYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHhccc
Confidence 9999999854
No 93
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=1.3e-05 Score=82.89 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=48.7
Q ss_pred cCCCCCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 001796 255 YIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSL 311 (1012)
Q Consensus 255 ~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 311 (1012)
+..++..+.|-||++-+.||--++|||-||=+||..|..+ ..-||.||+++.+..+
T Consensus 233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 4445568999999999999999999999999999999987 5569999999877554
No 94
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.82 E-value=0.0082 Score=71.69 Aligned_cols=295 Identities=15% Similarity=0.133 Sum_probs=172.1
Q ss_pred HHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHh----cCCCchHHHHHHcCC
Q 001796 512 RIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKL----SGCSKNRELISAAGG 587 (1012)
Q Consensus 512 lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L----s~~~~~~~~i~~~g~ 587 (1012)
++...+..+-..|+..|..+.........-+..-+++.++.+++++- ++..|+.++.++ ..+... +.+
T Consensus 701 Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~-----~l~- 772 (1233)
T KOG1824|consen 701 LISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEP-----DLD- 772 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCC-----Ccc-
Confidence 44444555666788888888887776666667778999999998753 333344333332 111111 011
Q ss_pred hHHHHHHhhcCCCChh---H-------HHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHH
Q 001796 588 IPQVLELMFSSHVPSN---I-------IVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPA 657 (1012)
Q Consensus 588 i~~Lv~lL~~~~~~~~---~-------~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~a 657 (1012)
...++..+...-.... + ...|+++|...+.+. ....+..|+.-+.+..++..++--|
T Consensus 773 y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~-------------s~s~a~kl~~~~~s~~s~~~ikvfa 839 (1233)
T KOG1824|consen 773 YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQK-------------SKSLATKLIQDLQSPKSSDSIKVFA 839 (1233)
T ss_pred HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcccc-------------chhHHHHHHHHHhCCCCchhHHHHH
Confidence 4455566654422111 1 233444444333210 1234556666666554444567777
Q ss_pred HHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhh------------------
Q 001796 658 LRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYL------------------ 719 (1012)
Q Consensus 658 l~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l------------------ 719 (1012)
+-.|..+-.+.+.. -..+.-..+++.+++++++++.+|.-+|++++.++-+..-..+
T Consensus 840 ~LslGElgr~~~~s-----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSl 914 (1233)
T KOG1824|consen 840 LLSLGELGRRKDLS-----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSL 914 (1233)
T ss_pred HhhhhhhccCCCCC-----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHH
Confidence 77777775542210 0112223577888899999999999999998864322111100
Q ss_pred ----hc------CCChHHHHHhh-cC--CCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHH
Q 001796 720 ----LK------PKRLEALVGFL-EN--DAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENA 786 (1012)
Q Consensus 720 ----~~------~~~i~~Lv~lL-~~--~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a 786 (1012)
.. ...++.++.+| ++ +..+..+...+.+|+.|+..+++ ..+|.|-..+.++.+..+--+
T Consensus 915 kevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a~~~rs~v 986 (1233)
T KOG1824|consen 915 KEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEASNTRSSV 986 (1233)
T ss_pred HHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCCcchhhhh
Confidence 00 12333444444 11 11233455566777777776665 258888889999988888888
Q ss_pred HHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcC
Q 001796 787 LSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPK 842 (1012)
Q Consensus 787 ~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~ 842 (1012)
+.+...... ++++--.. .....|..+..++++++..|++.|..++-..+.+.+.
T Consensus 987 vsavKfsis-d~p~~id~-~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKps 1040 (1233)
T KOG1824|consen 987 VSAVKFSIS-DQPQPIDP-LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPS 1040 (1233)
T ss_pred hheeeeeec-CCCCccCH-HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHh
Confidence 877665433 23442222 2334688899999999999999999999888665553
No 95
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.0011 Score=69.70 Aligned_cols=290 Identities=14% Similarity=0.094 Sum_probs=169.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHH-hhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhh
Q 001796 464 ILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRA-AKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLG 542 (1012)
Q Consensus 464 i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 542 (1012)
...+|.++++.++.++..|+..|..++.. ..+... .+.-.++.+.+++....+ -..|+.+|.|++....-+..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 34578999999999999999999988754 222222 234567778888876554 5689999999999999888888
Q ss_pred hcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHH-------cCChHHHHHHhhcCCCChhHHHHHHHHHHHh
Q 001796 543 KEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISA-------AGGIPQVLELMFSSHVPSNIIVKCSEILEKL 615 (1012)
Q Consensus 543 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nL 615 (1012)
+. .+..++.++.++........+..|.||+..++....+.. .|.+.........+...-....+-+-++.||
T Consensus 81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl 159 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL 159 (353)
T ss_pred HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence 87 888888888776556778899999999998776544421 4444444455544422212237778889999
Q ss_pred hc--cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCC
Q 001796 616 SS--DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTD 693 (1012)
Q Consensus 616 a~--~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~ 693 (1012)
+. .||..+....- -.+..++.+-+ .++..=+...+.+|.|.|..... ...+... .+..|..+
T Consensus 160 s~~~~gR~l~~~~k~------~p~~kll~ft~--~~s~vRr~GvagtlkN~cFd~~~--h~~lL~e-~~~lLp~i----- 223 (353)
T KOG2973|consen 160 SQFEAGRKLLLEPKR------FPDQKLLPFTS--EDSQVRRGGVAGTLKNCCFDAKL--HEVLLDE-SINLLPAI----- 223 (353)
T ss_pred hhhhhhhhHhcchhh------hhHhhhhcccc--cchhhhccchHHHHHhhhccchh--HHHHhcc-hHHHHHHH-----
Confidence 98 56655443221 01112221111 11121244566677777765442 2333332 11111111
Q ss_pred HHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhc----CCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHH
Q 001796 694 SEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLE----NDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLN 769 (1012)
Q Consensus 694 ~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~----~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~ 769 (1012)
|.-++.. ++..+. +-..+|.=++.|. ...++.++..-..+|.-|+.... .++.+.+.|+.|
T Consensus 224 ----------LlPlagp--ee~sEE--dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR~kgvYp 288 (353)
T KOG2973|consen 224 ----------LLPLAGP--EELSEE--DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLRSKGVYP 288 (353)
T ss_pred ----------HhhcCCc--cccCHH--HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHHhcCchH
Confidence 1111111 111100 0011222224442 12356788888888888888444 478888888877
Q ss_pred HHHHHhcCC-ChhHHHHHHHH
Q 001796 770 AIINILKSG-TMEAKENALSA 789 (1012)
Q Consensus 770 ~Lv~lL~~~-~~~~~~~a~~a 789 (1012)
.+-++=+.. ++++++.+-..
T Consensus 289 ilRElhk~e~ded~~~ace~v 309 (353)
T KOG2973|consen 289 ILRELHKWEEDEDIREACEQV 309 (353)
T ss_pred HHHHHhcCCCcHHHHHHHHHH
Confidence 777665544 44455444333
No 96
>PF05536 Neurochondrin: Neurochondrin
Probab=97.80 E-value=0.0075 Score=71.84 Aligned_cols=403 Identities=16% Similarity=0.133 Sum_probs=227.8
Q ss_pred HHHHhccCCCHHHHHHHHHHHHHHhccccch---hhhhhhcCCcccccccccc-------CC-hhhHHHHHHHHHHhhcc
Q 001796 378 IISILGSSHNKDVKMKILITLKQLVKGHARN---KEKVIDYGGWDHIVPCLGR-------DP-SISLAAVKLLYELMQDR 446 (1012)
Q Consensus 378 Lv~lL~~~~~~~~~~~a~~~L~~La~~~~~~---~~~i~~~g~i~~lv~lL~~-------~~-~~~~~A~~~L~~ls~~~ 446 (1012)
-+.+|++. +.+.|..++..+..+.++++.+ +..|.++=+.+.+-++|.. +. ..+.-|+.+|..++..+
T Consensus 10 c~~lL~~~-~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~ 88 (543)
T PF05536_consen 10 CLSLLKSA-DDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDP 88 (543)
T ss_pred HHHHhccC-CcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCCh
Confidence 35566653 4566777778888887766543 4457787778888888843 11 34568899999998854
Q ss_pred CCchHHhhhhhhhccChHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHH
Q 001796 447 SGWNVAVCRKLSQQCSGILFLVTLIKGPVR-ESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMM 525 (1012)
Q Consensus 447 ~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~ 525 (1012)
.-.. ..++ -+.||.|+..+.+.+. +....|..+|..++ .+++.+..+.+.|+++.|++.+.+ .+..+..++
T Consensus 89 ~~a~---~~~~---~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 89 ELAS---SPQM---VSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred hhhc---CHHH---HHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 3210 1111 2679999999987766 89999999999998 677888999999999999999987 455677888
Q ss_pred HHHHhcccccchhhHhhh----cCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCch--HHHHHHcC----ChHHHHHHh
Q 001796 526 KALLSMELVDSNLELLGK----EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKN--RELISAAG----GIPQVLELM 595 (1012)
Q Consensus 526 ~aL~~Ls~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~g----~i~~Lv~lL 595 (1012)
.++.++.........--. ...++.+-..........+-..+..|..+-...+. ....-... ....+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 888887664332111011 12334444444443344455566666666543321 11111122 233455566
Q ss_pred hcCCCChhHHHHHHHHHHHhhc-cCccceecccCCccchhHHHHHHHH---------------HHhccCCC---------
Q 001796 596 FSSHVPSNIIVKCSEILEKLSS-DGIKFLVDEKGNRLELEPIVTNLLT---------------LQQNFNSS--------- 650 (1012)
Q Consensus 596 ~~~~~~~~~~~~a~~~L~nLa~-~~~~~~~~~~g~~l~~~~~v~~Ll~---------------ll~~~~~~--------- 650 (1012)
.+..... .+..+....+.|.. .|.+++..... .....+..-+++ ..+.....
T Consensus 241 ~sr~~~~-~R~~al~Laa~Ll~~~G~~wl~~~~~--~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~c 317 (543)
T PF05536_consen 241 QSRLTPS-QRDPALNLAASLLDLLGPEWLFADDK--KSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASC 317 (543)
T ss_pred hcCCCHH-HHHHHHHHHHHHHHHhChHhhcCCCC--CCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHH
Confidence 6654432 33444444455554 44444433332 000111111111 11110000
Q ss_pred hhhHHHHHHHHHHhccCc----hHHHHHHHHh--cCcHHHHHHhhcCC------CHHHHHHHHHHHHH-hccCCCcchHH
Q 001796 651 YNVRKPALRALFRICKSE----AELVKIAVVK--ANGVSLILSLLDDT------DSEVREIAINLLFL-FSHHEPEGVVE 717 (1012)
Q Consensus 651 ~~~~~~al~aL~~L~~~~----~~~~~~~i~~--~g~v~~Lv~ll~~~------~~~v~~~a~~~L~~-ls~~~~~~~~~ 717 (1012)
..+-+..+..+.+-+... +.....+++. .+.+..++++|++- ++...-+++++|+. |+.. +...++
T Consensus 318 f~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe-~~~lr~ 396 (543)
T PF05536_consen 318 FSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEE-TSALRK 396 (543)
T ss_pred HHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhC-hHHHHH
Confidence 011222222222211111 1111122222 24456677777653 22355566777766 5544 433333
Q ss_pred hhhcCCChHHHHHhhcCCCc---------hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHh----cC--CChh-
Q 001796 718 YLLKPKRLEALVGFLENDAK---------HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINIL----KS--GTME- 781 (1012)
Q Consensus 718 ~l~~~~~i~~Lv~lL~~~~~---------~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL----~~--~~~~- 781 (1012)
.+ .+.+|.++.+.+.+.. .+...--.-+|+.++. +++.++.+...|+...+.+.+ +. +...
T Consensus 397 ~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~-e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~~~~~ 473 (543)
T PF05536_consen 397 EV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTA-EEEGRKILLSNGGWKLLCDDLLKILQSPSGDDDA 473 (543)
T ss_pred HH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhc-cHHHHHHHHhCCcHHHHHHHHHHHHHhcccCcch
Confidence 32 5788889988865422 2345556677888887 566689999999988777643 22 1111
Q ss_pred ------HHHHHHHHHHhccCC
Q 001796 782 ------AKENALSALFRFTDP 796 (1012)
Q Consensus 782 ------~~~~a~~aL~~Ls~~ 796 (1012)
....++++|.|++..
T Consensus 474 ~~~~~~~l~~~c~illNl~~~ 494 (543)
T PF05536_consen 474 EDSAEMALVTACGILLNLVVT 494 (543)
T ss_pred hhhhHHHHHHHHHHHHHHHhc
Confidence 345679999999875
No 97
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.79 E-value=2.1e-05 Score=57.43 Aligned_cols=39 Identities=36% Similarity=0.534 Sum_probs=36.0
Q ss_pred cccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCC
Q 001796 264 CRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPET 302 (1012)
Q Consensus 264 cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~ 302 (1012)
|||+++..++|++++|||.|+..|+..|+..+...||.+
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998667789975
No 98
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.017 Score=65.47 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=168.1
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcH-HHH-HHhhcC-CCHHHHHHHHHHHHH-hccCC
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGV-SLI-LSLLDD-TDSEVREIAINLLFL-FSHHE 711 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v-~~L-v~ll~~-~~~~v~~~a~~~L~~-ls~~~ 711 (1012)
.+..+++....+.+. .++..++.++.++|.+.+.. ..+...+.+ -.+ ..-+.. ++..+|-.|+++|.. +-.-
T Consensus 134 lm~~mv~nvg~eqp~-~~k~~sl~~~gy~ces~~Pe--~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv- 209 (858)
T COG5215 134 LMEEMVRNVGDEQPV-SGKCESLGICGYHCESEAPE--DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFV- 209 (858)
T ss_pred HHHHHHHhccccCch-HhHHHHHHHHHHHhhccCHH--HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHH-
Confidence 445555554444432 37899999999999865432 222222322 122 223333 366799999998876 3211
Q ss_pred CcchHHhhhcCCChHHHHHh---hcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHH
Q 001796 712 PEGVVEYLLKPKRLEALVGF---LENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALS 788 (1012)
Q Consensus 712 ~~~~~~~l~~~~~i~~Lv~l---L~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~ 788 (1012)
...+...+-...+++. ...+.+.++|.+|.++|..+-.-.....+..++.-......+.+++.+.++.-.|+.
T Consensus 210 ----~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavE 285 (858)
T COG5215 210 ----QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVE 285 (858)
T ss_pred ----HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 1111112222223332 234557889999999998876545555565666665666667789999999888888
Q ss_pred HHHhccCCCCHHHHHHH----------------HHcCCHHHHHHHHhcC-------CHHHHHHHHHHHHhhccCCcCCcc
Q 001796 789 ALFRFTDPTNLEAQRNV----------------VERGVYPLLVNLLQIG-------SITAKARAAALIGTLSTSSPKFTD 845 (1012)
Q Consensus 789 aL~~Ls~~~~~~~~~~i----------------~~~g~i~~Lv~lL~s~-------~~~vk~~Aa~aL~nLs~~~~~l~~ 845 (1012)
....++... .+..-.+ .-.+++|.|..||... ++.+-..|..+|.-++.
T Consensus 286 fWsticeEe-id~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq------- 357 (858)
T COG5215 286 FWSTICEEE-IDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ------- 357 (858)
T ss_pred HHHHHHHHH-hhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH-------
Confidence 776666431 1110011 1234689999999752 34577888888887743
Q ss_pred CCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHH----HhccCCChHHHHHHHHHHHHHhhccchhhhhHH
Q 001796 846 MPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLV----KLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNV 921 (1012)
Q Consensus 846 ~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv----~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~ 921 (1012)
..+ ...+.|.. +-+++++-.-.+.|+.|++.+.++ .+......
T Consensus 358 -------------------~~g-------------d~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~ 404 (858)
T COG5215 358 -------------------LKG-------------DKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTK 404 (858)
T ss_pred -------------------Hhh-------------hHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHh
Confidence 111 12233333 335666666778899999998874 22334445
Q ss_pred hhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 922 LHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 922 i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
++. .++|.|...+.++.-.+++.++|.+.+|+.+
T Consensus 405 ~V~-qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 405 IVP-QALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hHH-hhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 554 7899999999888888999999999999977
No 99
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=5e-06 Score=87.87 Aligned_cols=67 Identities=15% Similarity=0.033 Sum_probs=58.1
Q ss_pred CCceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccC-CCCCccCHHHHHHHHHHH
Q 001796 259 LNAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLE-DTSLRSNSPLRQSIEEWK 325 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~-~~~l~~n~~l~~~i~~~~ 325 (1012)
-.+|.||||++|++--.++ .|+|.||++||-+-+..|+..||.|++.+. ..+|.+.+..-.+|.+.-
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 4589999999999998888 999999999999999999999999999984 557887777777776643
No 100
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.008 Score=71.99 Aligned_cols=336 Identities=13% Similarity=0.111 Sum_probs=222.3
Q ss_pred hHHHHHHHHHHhhccCCchHHhhhhhh---hccChHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcH
Q 001796 432 SLAAVKLLYELMQDRSGWNVAVCRKLS---QQCSGILFLVTLIKG-PVRESAECAEKILQQLFDVDEENFCRAAKSGWYK 507 (1012)
Q Consensus 432 ~~~A~~~L~~ls~~~~~~~~~~~~~i~---~~~g~i~~Lv~lL~~-~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~ 507 (1012)
...++.+|.|+.+.+++ .....+ .--|..+.+...+.+ .++.++.-|..++..+. .+.+....+++.|.+.
T Consensus 1742 v~m~LtAL~Nli~~nPd----lasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~ 1816 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPD----LASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLT 1816 (2235)
T ss_pred HHHHHHHHHHHHhhCcc----hhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHH
Confidence 35788999999876552 111111 123667788888874 46678888888887775 5667888999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCC-ChhHHHHHHHHHHHhcCCCc----hHHHH
Q 001796 508 PLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSG-NFQSKELSLSVLVKLSGCSK----NRELI 582 (1012)
Q Consensus 508 ~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~----~~~~i 582 (1012)
.|+.+|.+ -+..|..++..|+.|+++.+-.....+.|++..+..++... .+..+..++..|..|..++- .+..+
T Consensus 1817 ~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL 1895 (2235)
T KOG1789|consen 1817 TLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITL 1895 (2235)
T ss_pred HHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeeh
Confidence 99999986 46688899999999999998888888999999999887554 47888999999999975432 22111
Q ss_pred -----------HHcCChHHHHHHhhcCCCChh------HHHHHHHHHHHhhc-------cCc------------------
Q 001796 583 -----------SAAGGIPQVLELMFSSHVPSN------IIVKCSEILEKLSS-------DGI------------------ 620 (1012)
Q Consensus 583 -----------~~~g~i~~Lv~lL~~~~~~~~------~~~~a~~~L~nLa~-------~~~------------------ 620 (1012)
+..| -...|.++.+.+.... .......++..+.. ++.
T Consensus 1896 ~kFLP~~f~d~~RD~-PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1896 IKFLPEIFADSLRDS-PEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred HHhchHHHHHHHhcC-HHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 1222 2566666666543332 12333344444443 110
Q ss_pred ---------cceecccCCcc-----chhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHH
Q 001796 621 ---------KFLVDEKGNRL-----ELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLIL 686 (1012)
Q Consensus 621 ---------~~~~~~~g~~l-----~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv 686 (1012)
+.++...+-.+ ...+.++.++.++...++....-.-...++..|-...++ ..+.+-..|-+|.++
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~-LADqip~LGylPK~~ 2053 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPN-LADQLPSLGYLPKFC 2053 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcc-hhhhCCCccchHHHH
Confidence 01111222111 134566667777776665443444455556666554433 456777789999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCC-CHHHHHHHHhh
Q 001796 687 SLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKS-ELSLTMKLIEL 765 (1012)
Q Consensus 687 ~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~-~~~~~~~l~~~ 765 (1012)
..+...+..+-..|++.|..|+.. +...+.+....++..++..++... ...--|+.+|..+-.. ..+......+.
T Consensus 2054 ~Am~~~n~s~P~SaiRVlH~Lsen--~~C~~AMA~l~~i~~~m~~mkK~~--~~~GLA~EalkR~~~r~~~eLVAQ~LK~ 2129 (2235)
T KOG1789|consen 2054 TAMCLQNTSAPRSAIRVLHELSEN--QFCCDAMAQLPCIDGIMKSMKKQP--SLMGLAAEALKRLMKRNTGELVAQMLKC 2129 (2235)
T ss_pred HHHHhcCCcCcHHHHHHHHHHhhc--cHHHHHHhccccchhhHHHHHhcc--hHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 988777666778899999999876 666677788888888888876542 2233566666555432 23344556688
Q ss_pred ccHHHHHHHhcCCC
Q 001796 766 DGLNAIINILKSGT 779 (1012)
Q Consensus 766 g~i~~Lv~lL~~~~ 779 (1012)
|.+|.|+.+|...+
T Consensus 2130 gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2130 GLVPYLLQLLDSST 2143 (2235)
T ss_pred CcHHHHHHHhcccc
Confidence 99999999997543
No 101
>PHA02926 zinc finger-like protein; Provisional
Probab=97.73 E-value=2.2e-05 Score=78.10 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=44.0
Q ss_pred CCCceecccccccCCC---------ceecCCCccccHHHHHHHHhcC-----CCCCCCCCcccCCCCCccC
Q 001796 258 PLNAFKCRITGTVMMD---------PVSLYTGTTCERAAIEAWLDRR-----EKTDPETGVVLEDTSLRSN 314 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~d---------Pv~~~~g~t~~r~~i~~~~~~~-----~~~cp~~~~~l~~~~l~~n 314 (1012)
..++..|+||++...+ +++.+|||+||..||.+|.... ..+||.||+++. .++|+
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~--~I~pS 235 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR--NITMS 235 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee--eeccc
Confidence 4578999999998755 4777999999999999999742 346999999875 34444
No 102
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.0083 Score=69.31 Aligned_cols=340 Identities=13% Similarity=0.093 Sum_probs=197.5
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHh
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
..+..+..-+..+...++......|..+.... .......+.+.+.+++..+....+..++..+..+..+ .....+
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~----~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g-~~i~~~ 170 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLS----KGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNG-LGIESL 170 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHh----hccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC-cHHhhh
Confidence 45677777777788888888777776654211 1112233456677778777777788888887776542 234455
Q ss_pred hhcCChHHHHhhhcCCChhHHH-HHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCC-ChhHHHHHHHHHHHhhccC
Q 001796 542 GKEGIIPPLLGLVGSGNFQSKE-LSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHV-PSNIIVKCSEILEKLSSDG 619 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~~~~~~~-~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~~~~~~~a~~~L~nLa~~~ 619 (1012)
.+.+.+..|.....+.+..... .+.-+.-..+.+- ....+.+.++.+-.++.+..+ ...+++.|..+...+-..
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L---g~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~- 246 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL---GPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRC- 246 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc---CCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh-
Confidence 5678888888887765533322 2332222222211 122445567777777765422 222334444443333220
Q ss_pred ccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHH
Q 001796 620 IKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREI 699 (1012)
Q Consensus 620 ~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~ 699 (1012)
+...+ ....++.++.-+... ..+.+..++..|..|....+.. -...-...+|.+.+.|.+.++++++.
T Consensus 247 ----~~~~a----VK~llpsll~~l~~~--kWrtK~aslellg~m~~~ap~q--Ls~~lp~iiP~lsevl~DT~~evr~a 314 (569)
T KOG1242|consen 247 ----LSAYA----VKLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAPKQ--LSLCLPDLIPVLSEVLWDTKPEVRKA 314 (569)
T ss_pred ----cCcch----hhHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhchHH--HHHHHhHhhHHHHHHHccCCHHHHHH
Confidence 00111 233455555555443 3457889999999887765532 33344567899999999999999999
Q ss_pred HHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhcc----HHHHHHHh
Q 001796 700 AINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDG----LNAIINIL 775 (1012)
Q Consensus 700 a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~----i~~Lv~lL 775 (1012)
+..++..+..-.... .+ ...+|.|++.+..+.. .+. .+.-.|..-.. -+.++.-. +|.|.+-+
T Consensus 315 ~~~~l~~~~svidN~--dI---~~~ip~Lld~l~dp~~-~~~-e~~~~L~~ttF------V~~V~~psLalmvpiL~R~l 381 (569)
T KOG1242|consen 315 GIETLLKFGSVIDNP--DI---QKIIPTLLDALADPSC-YTP-ECLDSLGATTF------VAEVDAPSLALMVPILKRGL 381 (569)
T ss_pred HHHHHHHHHHhhccH--HH---HHHHHHHHHHhcCccc-chH-HHHHhhcceee------eeeecchhHHHHHHHHHHHH
Confidence 999988876542211 11 2457888888876631 111 11111211100 00011222 34444445
Q ss_pred cCCChhHHHHHHHHHHhccCCC-CHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 776 KSGTMEAKENALSALFRFTDPT-NLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 776 ~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
...+...++.++.+..|++.-- ++..-..+. ...+|.|-..+.+..|++|..++.||+.+
T Consensus 382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred hhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 4556678999999999998763 344322222 23566666666677899999999999776
No 103
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.6e-05 Score=76.08 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=43.8
Q ss_pred ceecccccccCCCc--eecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCcc
Q 001796 261 AFKCRITGTVMMDP--VSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRS 313 (1012)
Q Consensus 261 ~~~cpi~~~~m~dP--v~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 313 (1012)
-|.||||++-++.= |.+.|||-||+.||+..++. ...||.|+.++.++.+.+
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence 49999999998764 55699999999999999987 668999999888765543
No 104
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.0053 Score=64.77 Aligned_cols=276 Identities=18% Similarity=0.197 Sum_probs=159.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcC
Q 001796 507 KPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAG 586 (1012)
Q Consensus 507 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g 586 (1012)
..++.+|.+.++.++..|+..+.++.........-.+.-.++.+.+++...++ .+.|+.+|.|++..+..+..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~- 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD- 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH-
Confidence 45788899999999999999888887762212222245678889999987666 678999999999999999888877
Q ss_pred ChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhcc
Q 001796 587 GIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICK 666 (1012)
Q Consensus 587 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~ 666 (1012)
.+..++..+...... +....+..|.||+.+. +.+..+ +.++.
T Consensus 83 ~~k~l~~~~~~p~~~--lad~~cmlL~NLs~~~---------------~~~~~l--------------------l~~~~- 124 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSP--LADLICMLLSNLSRDD---------------DEVAAL--------------------LTNLT- 124 (353)
T ss_pred HHHHHHHHhcCcccc--hHHHHHHHHHHhccCc---------------hHHHHH--------------------HHhcc-
Confidence 667777777665443 4467778888888621 011111 11111
Q ss_pred CchHHHHHHHHhcCcHHHHHHhhcCC-CHHH-HHHHHHHHHHhccCCCcchHHhhhcCCChHH-HHHhhcCCCchHHHHH
Q 001796 667 SEAELVKIAVVKANGVSLILSLLDDT-DSEV-REIAINLLFLFSHHEPEGVVEYLLKPKRLEA-LVGFLENDAKHDVQMA 743 (1012)
Q Consensus 667 ~~~~~~~~~i~~~g~v~~Lv~ll~~~-~~~v-~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~-Lv~lL~~~~~~~~~~~ 743 (1012)
.+ .+.|.+.....+++.+ +... -..-+-++.+++.. ..++ ..+.....++. -+.-+.+.++.-.+..
T Consensus 125 --~~------~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~-~~gR-~l~~~~k~~p~~kll~ft~~~s~vRr~G 194 (353)
T KOG2973|consen 125 --EK------KDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF-EAGR-KLLLEPKRFPDQKLLPFTSEDSQVRRGG 194 (353)
T ss_pred --cc------cccchHHHHHHHhCcccccccchhHHHHHHHHHhhh-hhhh-hHhcchhhhhHhhhhcccccchhhhccc
Confidence 00 0122222333333332 2111 12233456666655 2222 22233331111 1111233222223334
Q ss_pred HHHHHhccCCCCHHHHHHHHh--hccHHHHHHHhc--------------------------CCChhHHHHHHHHHHhccC
Q 001796 744 AAGLLANLPKSELSLTMKLIE--LDGLNAIINILK--------------------------SGTMEAKENALSALFRFTD 795 (1012)
Q Consensus 744 Aa~aL~nL~~~~~~~~~~l~~--~g~i~~Lv~lL~--------------------------~~~~~~~~~a~~aL~~Ls~ 795 (1012)
.+++|.|.+.... +...+++ ...+|.|+-=+. .+++.++..-+.+|.-||.
T Consensus 195 vagtlkN~cFd~~-~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca 273 (353)
T KOG2973|consen 195 VAGTLKNCCFDAK-LHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA 273 (353)
T ss_pred hHHHHHhhhccch-hHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh
Confidence 7888998887444 4555554 234444432211 1234578888999999988
Q ss_pred CCCHHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q 001796 796 PTNLEAQRNVVERGVYPLLVNLLQI-GSITAKARAAALIGTL 836 (1012)
Q Consensus 796 ~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~vk~~Aa~aL~nL 836 (1012)
. ..-|..+++.|+.|.+..+=.. .++++++.+-.....+
T Consensus 274 T--~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 274 T--RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred h--hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 5 4557888888888877766543 3566766655555554
No 105
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.69 E-value=0.00025 Score=65.24 Aligned_cols=129 Identities=17% Similarity=0.166 Sum_probs=102.9
Q ss_pred cHHHHHHHhc-CCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCcc
Q 001796 767 GLNAIINILK-SGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTD 845 (1012)
Q Consensus 767 ~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~ 845 (1012)
.+..|+.-.+ ..+.+.|+....-|.|++. +|-+-..+.+.+++..+++-|...+...++.+..+|+|+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNl--------- 85 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNL--------- 85 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhh---------
Confidence 4555665444 4578899999999999987 467678889999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhc
Q 001796 846 MPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQE 925 (1012)
Q Consensus 846 ~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~ 925 (1012)
|....+ ...++++++++..+..+.+.+..++..|+.+|..|.-. ....++.|...
T Consensus 86 -----------------C~d~~n------~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~--~Rt~r~ell~p 140 (173)
T KOG4646|consen 86 -----------------CLDKTN------AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFG--ERTERDELLSP 140 (173)
T ss_pred -----------------ccChHH------HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCc--ccchhHHhccH
Confidence 765544 37788999999999999999999999999999988864 24455566553
Q ss_pred CCchHH
Q 001796 926 EAIKPT 931 (1012)
Q Consensus 926 ~~v~~L 931 (1012)
..+..+
T Consensus 141 ~Vv~~v 146 (173)
T KOG4646|consen 141 AVVRTV 146 (173)
T ss_pred HHHHHH
Confidence 333333
No 106
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.67 E-value=4.4e-05 Score=56.68 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=37.9
Q ss_pred ccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 534 VDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 534 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
+++++..+++.|++|+|+++|+++++++++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999999999999974
No 107
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.60 E-value=0.0001 Score=54.66 Aligned_cols=40 Identities=33% Similarity=0.426 Sum_probs=37.1
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 798 NLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 798 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
+++.+..+.+.|++|.|+++|+++++.+++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3677889999999999999999999999999999999995
No 108
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.59 E-value=0.027 Score=63.58 Aligned_cols=278 Identities=20% Similarity=0.191 Sum_probs=166.1
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHh
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
..++.++..+.+.+..++..|+..+..+. ...+++.+..++.+.+..+|..++.+|+++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~---------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGEL---------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence 46888899999988899999998866653 466789999999999999999999988764
Q ss_pred hhcCChHHHHhhhc-CCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCCh----------hHHHHHHH
Q 001796 542 GKEGIIPPLLGLVG-SGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPS----------NIIVKCSE 610 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~----------~~~~~a~~ 610 (1012)
....++|.|+.++. +++..++..+..+|..+-.. .++.+++..+......+ .++..+..
T Consensus 102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 33567899999998 57888999999999887543 23778888887754211 12233333
Q ss_pred HHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhc
Q 001796 611 ILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLD 690 (1012)
Q Consensus 611 ~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~ 690 (1012)
.|..+- ....+..+...+.... ..++..|..+|..+.... ..+.+.+...+.
T Consensus 172 ~l~~~~----------------~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~ 223 (335)
T COG1413 172 ALGELG----------------DPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN----------VEAADLLVKALS 223 (335)
T ss_pred HHHHcC----------------ChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch----------hhHHHHHHHHhc
Confidence 333333 1234555566665533 346677766666654332 122355666667
Q ss_pred CCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHH
Q 001796 691 DTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNA 770 (1012)
Q Consensus 691 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~ 770 (1012)
+++..++..++..|..+... ..+..++..+... +..+...+..++..+-. ......
T Consensus 224 ~~~~~vr~~~~~~l~~~~~~------------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~ 279 (335)
T COG1413 224 DESLEVRKAALLALGEIGDE------------EAVDALAKALEDE-DVILALLAAAALGALDL-----------AEAALP 279 (335)
T ss_pred CCCHHHHHHHHHHhcccCcc------------hhHHHHHHHHhcc-chHHHHHHHHHhcccCc-----------hhhHHH
Confidence 77777777776666554222 2344555555544 22233222222221111 112344
Q ss_pred HHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 001796 771 IINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIG 834 (1012)
Q Consensus 771 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~ 834 (1012)
+...+.+....++..+..++..+... .....+.....++...++..+..++.
T Consensus 280 l~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 331 (335)
T COG1413 280 LLLLLIDEANAVRLEAALALGQIGQE------------KAVAALLLALEDGDADVRKAALILLE 331 (335)
T ss_pred HHHHhhcchhhHHHHHHHHHHhhccc------------chHHHHHHHhcCCchhhHHHHHHHHH
Confidence 44555555555555555555555432 12333344444555555555544443
No 109
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.56 E-value=0.015 Score=65.86 Aligned_cols=235 Identities=15% Similarity=0.177 Sum_probs=151.3
Q ss_pred ChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceec
Q 001796 546 IIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVD 625 (1012)
Q Consensus 546 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~ 625 (1012)
..+.+..++-+++.+++..+.++++.+..+.+.-..+.+.+.--.++.-|........-+++|...+..+..-
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~------- 98 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI------- 98 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-------
Confidence 3444444554555999999999999999999999999999977777888877666655678999998888751
Q ss_pred ccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 001796 626 EKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLF 705 (1012)
Q Consensus 626 ~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~ 705 (1012)
..|......+++..++.+....+ ...+..|+..|+.++-..+ +.+...||+..|++.+.++..++.+..+.++-
T Consensus 99 ~~~~~~~~~~vvralvaiae~~~--D~lr~~cletL~El~l~~P----~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL 172 (371)
T PF14664_consen 99 KKGPKEIPRGVVRALVAIAEHED--DRLRRICLETLCELALLNP----ELVAECGGIRVLLRALIDGSFSISESLLDTLL 172 (371)
T ss_pred cCCcccCCHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHhhCH----HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHH
Confidence 01111235778999999998854 4589999999999988655 56778999999999988766567777766555
Q ss_pred HhccCCCcchHHhhhcCCChHHHHHhhcCC------Cch--HHHHHHHHHHhccCCCCHHHHHHHH-hhccHHHHHHHhc
Q 001796 706 LFSHHEPEGVVEYLLKPKRLEALVGFLEND------AKH--DVQMAAAGLLANLPKSELSLTMKLI-ELDGLNAIINILK 776 (1012)
Q Consensus 706 ~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~------~~~--~~~~~Aa~aL~nL~~~~~~~~~~l~-~~g~i~~Lv~lL~ 776 (1012)
.+-.. |..+ ..+...--++.++.-+... ++. +....+..++..+-.+-+..--.-. +..++..|+..|.
T Consensus 173 ~lLd~-p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~ 250 (371)
T PF14664_consen 173 YLLDS-PRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLR 250 (371)
T ss_pred HHhCC-cchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHc
Confidence 55444 3333 2233334455555544222 121 1223333333332222221110011 1246777777777
Q ss_pred CCChhHHHHHHHHHHhccC
Q 001796 777 SGTMEAKENALSALFRFTD 795 (1012)
Q Consensus 777 ~~~~~~~~~a~~aL~~Ls~ 795 (1012)
.+++++++....+|..+-.
T Consensus 251 ~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 251 LPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred CCCHHHHHHHHHHHHHHHC
Confidence 7777777777777766543
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.54 E-value=0.026 Score=63.79 Aligned_cols=250 Identities=22% Similarity=0.246 Sum_probs=153.7
Q ss_pred CCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHH
Q 001796 504 GWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELIS 583 (1012)
Q Consensus 504 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 583 (1012)
..++.++..+.+.+..+|..++..++.+ ...-++|.+..++.+.++.++..|+.+|..+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~----------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL----------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh----------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 5678888889888888999998886543 335578999999999999999999987766533
Q ss_pred HcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCCh----------hh
Q 001796 584 AAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSY----------NV 653 (1012)
Q Consensus 584 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~----------~~ 653 (1012)
..+++.|++.+.. +.+..++..|+..|..+-. ...+..++..+....... .+
T Consensus 104 -~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~~~----------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 104 -PEAVPPLVELLEN-DENEGVRAAAARALGKLGD----------------ERALDPLLEALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred -hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhcCc----------------hhhhHHHHHHhccchhhhhhhhccchHHHH
Confidence 2368999999986 3334466888888887763 335667777766543110 12
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhc
Q 001796 654 RKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLE 733 (1012)
Q Consensus 654 ~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~ 733 (1012)
+..+..+|..+ -..-.++.+..++.+.+..++..|...|..+..+. ....+.+...+.
T Consensus 166 r~~a~~~l~~~------------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~ 223 (335)
T COG1413 166 RAAAAEALGEL------------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALS 223 (335)
T ss_pred HHHHHHHHHHc------------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhc
Confidence 22222222222 11223456667777777777777777776665442 122344444444
Q ss_pred CCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHH
Q 001796 734 NDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPL 813 (1012)
Q Consensus 734 ~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~ 813 (1012)
.. +..++..++.+|+.+.... .++.++..+...+..++..+..++..+-. ....+.
T Consensus 224 ~~-~~~vr~~~~~~l~~~~~~~-----------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 279 (335)
T COG1413 224 DE-SLEVRKAALLALGEIGDEE-----------AVDALAKALEDEDVILALLAAAALGALDL------------AEAALP 279 (335)
T ss_pred CC-CHHHHHHHHHHhcccCcch-----------hHHHHHHHHhccchHHHHHHHHHhcccCc------------hhhHHH
Confidence 44 5566666766666665422 25666666666666555555544441111 113445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Q 001796 814 LVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 814 Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
+...+.+....++..++.++...
T Consensus 280 l~~~~~~~~~~~~~~~~~~l~~~ 302 (335)
T COG1413 280 LLLLLIDEANAVRLEAALALGQI 302 (335)
T ss_pred HHHHhhcchhhHHHHHHHHHHhh
Confidence 55555566666666666666655
No 111
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=97.53 E-value=0.002 Score=62.38 Aligned_cols=110 Identities=24% Similarity=0.314 Sum_probs=85.4
Q ss_pred HhHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001796 9 GTILAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNK 88 (1012)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~~~ 88 (1012)
+..++.+++.+.++...+..| |..+..|...|..|.|+++||...+..++.+-..-++.|...|++++.|++.|++.
T Consensus 12 G~~~~eLlk~v~~~~~k~~~f---k~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~ 88 (147)
T PF05659_consen 12 GAVFGELLKAVIDASKKSLSF---KSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKV 88 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhccc
Confidence 344455555555555444445 77888899999999999999987664445555888999999999999999999776
Q ss_pred chhHHHHhhHHHHHHHHHHHHHHHHHhhh-ccccc
Q 001796 89 SRFYLLVKCRYIVNEIQEVTRNIGRSLAS-LSLAN 122 (1012)
Q Consensus 89 skl~l~~~~~~~~~~~~~~~~~~~~~l~~-~p~~~ 122 (1012)
+ -|=+++...+..+++++-.+|...++. +|+..
T Consensus 89 ~-r~n~~kk~~y~~Ki~~le~~l~~f~~v~~q~~~ 122 (147)
T PF05659_consen 89 R-RWNLYKKPRYARKIEELEESLRRFIQVDLQLHQ 122 (147)
T ss_pred c-HHHHHhhHhHHHHHHHHHHHHHHHhcchhHHHH
Confidence 5 566678888999999999999998884 66433
No 112
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.51 E-value=0.015 Score=65.88 Aligned_cols=304 Identities=15% Similarity=0.109 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHHHhccccchhhhhhhcCCccccccccccC---ChhhHHHHHHHHHHhhccCCchHHhhhhhhhccCh
Q 001796 387 NKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRD---PSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSG 463 (1012)
Q Consensus 387 ~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~~---~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~ 463 (1012)
+.++|..+...+|.+..+. +.-..+.+.+.--.+++.|..+ ..++++|+++++.+.....+. +.+ ..|.
T Consensus 38 ~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-----~~~--~~~v 109 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-----KEI--PRGV 109 (371)
T ss_pred cHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc-----ccC--CHHH
Confidence 4788888888888887654 4455666666556677888543 256789999998887653321 111 3488
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhh
Q 001796 464 ILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGK 543 (1012)
Q Consensus 464 i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 543 (1012)
+..+|.+..+.+...+..|.++|..++-.++ ..+..+|++..|++.+.++..+.....+.++..+-.++..|..+..
T Consensus 110 vralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~ 186 (371)
T PF14664_consen 110 VRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRP 186 (371)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence 8999999999889999999999999987665 6678999999999999988777777777888888888888876665
Q ss_pred cCChHHHHhhhcCC-------Ch--hHHHHHHHHHHHhcCCCchHHHHHHc--CChHHHHHHhhcCCCChhHHHHHHHHH
Q 001796 544 EGIIPPLLGLVGSG-------NF--QSKELSLSVLVKLSGCSKNRELISAA--GGIPQVLELMFSSHVPSNIIVKCSEIL 612 (1012)
Q Consensus 544 ~g~i~~Lv~lL~~~-------~~--~~~~~a~~~L~~Ls~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~~~~~~a~~~L 612 (1012)
.--+..++.-..+. +. +-.+.+..++..+-.+-.+--.+... .++..|+..|.-.... +++....+|
T Consensus 187 ~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~--ir~~Ildll 264 (371)
T PF14664_consen 187 GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPE--IRKAILDLL 264 (371)
T ss_pred CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHH--HHHHHHHHH
Confidence 44455555544322 22 23445555555554444443333322 4788899999776443 456667777
Q ss_pred HHhhc-cCccceecc-cCCccchhHHHHHHHHHH---hccCC-ChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHH
Q 001796 613 EKLSS-DGIKFLVDE-KGNRLELEPIVTNLLTLQ---QNFNS-SYNVRKPALRALFRICKSEAELVKIAVVKANGVSLIL 686 (1012)
Q Consensus 613 ~nLa~-~~~~~~~~~-~g~~l~~~~~v~~Ll~ll---~~~~~-~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv 686 (1012)
..+-. ....+.-.. .|......+....-..+. ..+.. -+.... -=.++..+--.-+...+.+.|.++.|+
T Consensus 265 ~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~----~~~~l~~~y~aLll~ili~~gL~~~L~ 340 (371)
T PF14664_consen 265 FDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSS----KRPNLVNHYLALLLAILIEAGLLEALV 340 (371)
T ss_pred HHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCcccc----ccccHHHHHHHHHHHHHHHcChHHHHH
Confidence 76665 211111110 111011111110000010 00000 000000 000010000011345677899999999
Q ss_pred HhhcCC-CHHHHHHHHHHHHHh
Q 001796 687 SLLDDT-DSEVREIAINLLFLF 707 (1012)
Q Consensus 687 ~ll~~~-~~~v~~~a~~~L~~l 707 (1012)
++..+. ++.+...|.-+|+.+
T Consensus 341 ~li~~~~d~~l~~KAtlLL~el 362 (371)
T PF14664_consen 341 ELIESSEDSSLSRKATLLLGEL 362 (371)
T ss_pred HHHhcCCCchHHHHHHHHHHHH
Confidence 999887 777888888777654
No 113
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.50 E-value=0.00014 Score=77.66 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=41.9
Q ss_pred Cceeccccccc-CCCce----ecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCc
Q 001796 260 NAFKCRITGTV-MMDPV----SLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLR 312 (1012)
Q Consensus 260 ~~~~cpi~~~~-m~dPv----~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~ 312 (1012)
++-.||+|..- ...|= +-.|||+||++||...|..|...||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 56789999982 33442 2279999999999998888888999999998766643
No 114
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.051 Score=64.12 Aligned_cols=427 Identities=13% Similarity=0.133 Sum_probs=225.0
Q ss_pred cccccccc-CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHH
Q 001796 420 HIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFC 498 (1012)
Q Consensus 420 ~lv~lL~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~ 498 (1012)
.|..+|.+ .......|.+.+..+--...+ .....|.+|+...+.+.+++.-.---|..-|..+++ -.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d-----------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd-LA 106 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD-----------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD-LA 106 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc-----------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC-ce
Confidence 34556643 335566666655554332221 124567777777777777776665555555433321 11
Q ss_pred HHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCC-c
Q 001796 499 RAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCS-K 577 (1012)
Q Consensus 499 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~ 577 (1012)
.+ -|..+=+-|++.++.+|-.|+++|..+ |..++..=++-++-+...+..+.+++.|+-++-.|-.-+ +
T Consensus 107 LL----SIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 107 LL----SINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred ee----eHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 11 134455667788888998888888654 222221111222233445666889999999999987643 4
Q ss_pred hHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHH
Q 001796 578 NRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPA 657 (1012)
Q Consensus 578 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~a 657 (1012)
.+..+. ..+=.+|.+.++- +.-.|+.+...+|-+..+ ++ .+-..++.+++..-+ ...|-..
T Consensus 177 ~k~qL~-----e~I~~LLaD~spl--VvgsAv~AF~evCPerld-LI---------HknyrklC~ll~dvd--eWgQvvl 237 (968)
T KOG1060|consen 177 QKDQLE-----EVIKKLLADRSPL--VVGSAVMAFEEVCPERLD-LI---------HKNYRKLCRLLPDVD--EWGQVVL 237 (968)
T ss_pred hHHHHH-----HHHHHHhcCCCCc--chhHHHHHHHHhchhHHH-Hh---------hHHHHHHHhhccchh--hhhHHHH
Confidence 344332 3333445554433 335556666666642111 00 111222333332211 1122222
Q ss_pred HHHHHHhccC--chH-H--------------------HHHHHHhcCcHHHH----HHhhcCCCHHHHHHHHHHHHHhccC
Q 001796 658 LRALFRICKS--EAE-L--------------------VKIAVVKANGVSLI----LSLLDDTDSEVREIAINLLFLFSHH 710 (1012)
Q Consensus 658 l~aL~~L~~~--~~~-~--------------------~~~~i~~~g~v~~L----v~ll~~~~~~v~~~a~~~L~~ls~~ 710 (1012)
+..|..-|++ ++. . .+.-+....-+..| -.++.+.++.+..+++.+++.++..
T Consensus 238 I~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~ 317 (968)
T KOG1060|consen 238 INMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPK 317 (968)
T ss_pred HHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCH
Confidence 2222221211 000 0 00000000011222 2456677888999999999988765
Q ss_pred CCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHH-hcCCCh-hHHHHHHH
Q 001796 711 EPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINI-LKSGTM-EAKENALS 788 (1012)
Q Consensus 711 ~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~l-L~~~~~-~~~~~a~~ 788 (1012)
. . ....+++|+++|++. .++|...+..+..++...+. + ..|.+-.+ +.+.++ .++.-=+.
T Consensus 318 ~--~------~~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~----l----F~P~lKsFfv~ssDp~~vk~lKle 379 (968)
T KOG1060|consen 318 N--Q------VTKIAKALVRLLRSN--REVQYVVLQNIATISIKRPT----L----FEPHLKSFFVRSSDPTQVKILKLE 379 (968)
T ss_pred H--H------HHHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchh----h----hhhhhhceEeecCCHHHHHHHHHH
Confidence 2 1 134588999999775 35566555555555543332 1 23444443 333333 46666678
Q ss_pred HHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCC
Q 001796 789 ALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGG 868 (1012)
Q Consensus 789 aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~ 868 (1012)
+|.+|+...+.. . +++-|-...++.+..+...|..||+.++....
T Consensus 380 iLs~La~esni~--~------ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--------------------------- 424 (968)
T KOG1060|consen 380 ILSNLANESNIS--E------ILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--------------------------- 424 (968)
T ss_pred HHHHHhhhccHH--H------HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---------------------------
Confidence 888887653221 1 34556666777766666666677766533111
Q ss_pred ccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhcc-CChhhHhHHH
Q 001796 869 ICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTW-GTDSLKEEAL 947 (1012)
Q Consensus 869 ~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s-~~~~~~~~a~ 947 (1012)
-+..-++..||.+|.+.+..|+.+++..+..|.+. .+.--.. .+..|.+++.+ .-+..|....
T Consensus 425 ---------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~--~p~~h~~-----ii~~La~lldti~vp~ARA~Ii 488 (968)
T KOG1060|consen 425 ---------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK--DPAEHLE-----ILFQLARLLDTILVPAARAGII 488 (968)
T ss_pred ---------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhh--ChHHHHH-----HHHHHHHHhhhhhhhhhhceee
Confidence 12345678899999999999999999999999873 1111111 12345555542 2344555556
Q ss_pred HHHHHHhch
Q 001796 948 GFLEKVFMS 956 (1012)
Q Consensus 948 ~aL~~l~~~ 956 (1012)
|++...+..
T Consensus 489 WLige~~e~ 497 (968)
T KOG1060|consen 489 WLIGEYCEI 497 (968)
T ss_pred eeehhhhhh
Confidence 666655543
No 115
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.44 E-value=0.00011 Score=55.40 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=35.2
Q ss_pred ecccccccC---CCceecCCCccccHHHHHHHHhcCCCCCCCCCc
Q 001796 263 KCRITGTVM---MDPVSLYTGTTCERAAIEAWLDRREKTDPETGV 304 (1012)
Q Consensus 263 ~cpi~~~~m---~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~ 304 (1012)
.||+|.+.+ +.|++++|||+||..||.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999988 468888999999999999999 44678999974
No 116
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.017 Score=68.39 Aligned_cols=327 Identities=17% Similarity=0.154 Sum_probs=191.5
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHh
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
+++..++.-..++++..|..|...+..+-. .+ +-.-.+.+|.+.++++++.+|..++....++ +..+....
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v---~~----i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl--~~~~~~~~ 156 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRV---DK----ITEYLCDPLLKCLKDDDPYVRKTAAVCVAKL--FDIDPDLV 156 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEee---hH----HHHHHHHHHHHhccCCChhHHHHHHHHHHHh--hcCChhhc
Confidence 667777777778888888888877665531 11 1233567899999999999999888877765 34455666
Q ss_pred hhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCch-HHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCc
Q 001796 542 GKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKN-RELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGI 620 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~ 620 (1012)
.+.|.++.|.+++.+.++.+..+|+.+|..+.....+ -......-.+..++..+...+.. .-+.+|-.++....
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW-----~qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEW-----GQIFILDCLAEYVP 231 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhh-----hHHHHHHHHHhcCC
Confidence 7899999999999999999999999999999865432 11111111233333334333221 12344555553110
Q ss_pred cceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHH
Q 001796 621 KFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIA 700 (1012)
Q Consensus 621 ~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a 700 (1012)
+ .. .....++..+...+++.++. +.-.++.++..+...-.. ....+ -...-+.++.++.... +++--+
T Consensus 232 ~----d~---~ea~~i~~r~~p~Lqh~n~a--vvlsavKv~l~~~~~~~~-~~~~~-~~K~~~pl~tlls~~~-e~qyva 299 (734)
T KOG1061|consen 232 K----DS---REAEDICERLTPRLQHANSA--VVLSAVKVILQLVKYLKQ-VNELL-FKKVAPPLVTLLSSES-EIQYVA 299 (734)
T ss_pred C----Cc---hhHHHHHHHhhhhhccCCcc--eEeehHHHHHHHHHHHHH-HHHHH-HHHhcccceeeecccc-hhhHHH
Confidence 0 00 11244566666666665543 556666666666554322 11111 1122355666666655 666666
Q ss_pred HHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCCh
Q 001796 701 INLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTM 780 (1012)
Q Consensus 701 ~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 780 (1012)
++=++.+-...++-... ...+-..+-.++..++..=..++..++. ..+..+ .+.-+.+.-..-+.
T Consensus 300 LrNi~lil~~~p~~~~~--------~~~~Ff~kynDPiYvK~eKleil~~la~-~~nl~q------vl~El~eYatevD~ 364 (734)
T KOG1061|consen 300 LRNINLILQKRPEILKV--------EIKVFFCKYNDPIYVKLEKLEILIELAN-DANLAQ------VLAELKEYATEVDV 364 (734)
T ss_pred HhhHHHHHHhChHHHHh--------HhHeeeeecCCchhhHHHHHHHHHHHhh-HhHHHH------HHHHHHHhhhhhCH
Confidence 65554444333321110 1111122334444455444455555543 222111 23334444444567
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 781 EAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 781 ~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
+..+.+++++.+++... .+ ..+.|+.|.++++..-..+...+...++.+
T Consensus 365 ~fvrkaIraig~~aik~-e~------~~~cv~~lLell~~~~~yvvqE~~vvi~di 413 (734)
T KOG1061|consen 365 DFVRKAVRAIGRLAIKA-EQ------SNDCVSILLELLETKVDYVVQEAIVVIRDI 413 (734)
T ss_pred HHHHHHHHHhhhhhhhh-hh------hhhhHHHHHHHHhhcccceeeehhHHHHhh
Confidence 78889999999997741 11 167899999999987777778888888887
No 117
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.013 Score=67.66 Aligned_cols=283 Identities=15% Similarity=0.082 Sum_probs=157.5
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHH-HHHHHHHhccCCCcchHHhhhcCCChHHHHHhh
Q 001796 654 RKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREI-AINLLFLFSHHEPEGVVEYLLKPKRLEALVGFL 732 (1012)
Q Consensus 654 ~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~-a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL 732 (1012)
+..+...++.+..... .....+.+.+..+-....+.+...+.. +.-+.......-+ ...++..++.+-.+|
T Consensus 151 ~~~aa~~~ag~v~g~~---i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg-----~~~EPyiv~~lp~il 222 (569)
T KOG1242|consen 151 RAGAAYGLAGLVNGLG---IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG-----PPFEPYIVPILPSIL 222 (569)
T ss_pred HhhhhHHHHHHHcCcH---HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC-----CCCCchHHhhHHHHH
Confidence 4445555555544332 244556666777777777765554443 2222222221111 124566777777776
Q ss_pred cCC--CchHHHHHHHHH---Hhc-cCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHH
Q 001796 733 END--AKHDVQMAAAGL---LAN-LPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVV 806 (1012)
Q Consensus 733 ~~~--~~~~~~~~Aa~a---L~n-L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~ 806 (1012)
.+- ....++.+|..+ +.+ +..... . -.+|.++.-+.....+.+..++..|..+.... +. +-...
T Consensus 223 ~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV---K-----~llpsll~~l~~~kWrtK~aslellg~m~~~a-p~-qLs~~ 292 (569)
T KOG1242|consen 223 TNFGDKINKVREAAVEAAKAIMRCLSAYAV---K-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCA-PK-QLSLC 292 (569)
T ss_pred HHhhccchhhhHHHHHHHHHHHHhcCcchh---h-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-hH-HHHHH
Confidence 432 234455554433 222 211111 1 12444444444446778889999999887763 44 45566
Q ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchH
Q 001796 807 ERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPH 886 (1012)
Q Consensus 807 ~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~ 886 (1012)
...++|.+.+.|.+..+++|+.+..++.++ |.+-.|. . + ...++.
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~--------------------------~svidN~------d-I--~~~ip~ 337 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKF--------------------------GSVIDNP------D-I--QKIIPT 337 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHH--------------------------HHhhccH------H-H--HHHHHH
Confidence 788999999999999999999999999999 3333331 1 1 345677
Q ss_pred HHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHH----hccCChhhHhHHHHHHHHHhchHhhHhh
Q 001796 887 LVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEI----LTWGTDSLKEEALGFLEKVFMSKEMVDT 962 (1012)
Q Consensus 887 Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~l----l~s~~~~~~~~a~~aL~~l~~~~~~~~~ 962 (1012)
|++.+.+....+ .+++..|.. ...+..+. ...+..++-+ +...+..+++.++.++.|++..-+-.+.
T Consensus 338 Lld~l~dp~~~~-~e~~~~L~~-------ttFV~~V~-~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~ 408 (569)
T KOG1242|consen 338 LLDALADPSCYT-PECLDSLGA-------TTFVAEVD-APSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD 408 (569)
T ss_pred HHHHhcCcccch-HHHHHhhcc-------eeeeeeec-chhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH
Confidence 888887654332 334443322 11122221 1333334443 4456778889999999999987422222
Q ss_pred hcccccchhhhhhhhcccCCchHHHHHHHHHHHHHh
Q 001796 963 YGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIER 998 (1012)
Q Consensus 963 ~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~ 998 (1012)
....-...+-.+-..+.+..|++|..|+.+|.-+.+
T Consensus 409 lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 409 LAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLE 444 (569)
T ss_pred HhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence 221111111122122225578999999999954443
No 118
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.029 Score=66.63 Aligned_cols=53 Identities=15% Similarity=0.302 Sum_probs=48.5
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCcc
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRS 313 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 313 (1012)
=++||.|.+=.+|-|++-|||-||-.||+.-+.-..+.||.|+..|...++.|
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 58899999999999999999999999999999988999999999997766654
No 119
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.26 Score=58.49 Aligned_cols=168 Identities=10% Similarity=0.080 Sum_probs=101.3
Q ss_pred HHHHHhccCCCHHHHHHHHHHHH-HHhccccchhhhhhhcCCcccccccc-ccCChhhHHHHHHHHHHhhccCCchHHhh
Q 001796 377 IIISILGSSHNKDVKMKILITLK-QLVKGHARNKEKVIDYGGWDHIVPCL-GRDPSISLAAVKLLYELMQDRSGWNVAVC 454 (1012)
Q Consensus 377 ~Lv~lL~~~~~~~~~~~a~~~L~-~La~~~~~~~~~i~~~g~i~~lv~lL-~~~~~~~~~A~~~L~~ls~~~~~~~~~~~ 454 (1012)
-|..+|.+. ....+..|..-|- .+|+|.+ .. .-.|..|+.. +.+.++++-.---|+..+..+++.
T Consensus 39 dL~~lLdSn-kd~~KleAmKRIia~iA~G~d-vS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdL----- 105 (968)
T KOG1060|consen 39 DLKQLLDSN-KDSLKLEAMKRIIALIAKGKD-VS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDL----- 105 (968)
T ss_pred HHHHHHhcc-ccHHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCc-----
Confidence 356677664 4445566665444 4455433 11 1245667766 445567776666677777655431
Q ss_pred hhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-
Q 001796 455 RKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL- 533 (1012)
Q Consensus 455 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~- 533 (1012)
.+ =-|..+-+-|++++..+|..|..+|..+= ..+...=++-.+-+...+..+.+|..|+.++-.|-.
T Consensus 106 -AL----LSIntfQk~L~DpN~LiRasALRvlSsIR-------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 106 -AL----LSINTFQKALKDPNQLIRASALRVLSSIR-------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred -ee----eeHHHHHhhhcCCcHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 11 12556667788889899988888876651 111111111112223345678899999999998866
Q ss_pred ccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 534 VDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 534 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
+.+.+..+ +..+-.+|.+.++-+.-.|+.+...+|-
T Consensus 174 d~e~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 174 DPEQKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred ChhhHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 44545443 4555667777778888888888777763
No 120
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.023 Score=66.22 Aligned_cols=218 Identities=14% Similarity=0.188 Sum_probs=152.2
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhcc-CchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcc
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICK-SEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEG 714 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~-~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~ 714 (1012)
....++.++.++. +-+|+.|+.+|+.++- +++. ++. .+|.|++=|+++++.++.+|+..++-|+..+|.+
T Consensus 145 La~Dv~tLL~ssk--pYvRKkAIl~lykvFLkYPeA-lr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn 215 (877)
T KOG1059|consen 145 LADDVFTLLNSSK--PYVRKKAILLLYKVFLKYPEA-LRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN 215 (877)
T ss_pred HHHHHHHHHhcCc--hHHHHHHHHHHHHHHHhhhHh-Hhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence 3455667777655 4589999999999876 4542 443 3589999999999999999999999999998876
Q ss_pred hHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCCh-hHHHHHHHHHH--
Q 001796 715 VVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTM-EAKENALSALF-- 791 (1012)
Q Consensus 715 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-~~~~~a~~aL~-- 791 (1012)
.- ..-|.+-+++.++++.=+........++|+.-+|..... .+++|.+++.+... .+.-.++.++.
T Consensus 216 yL------~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~ 284 (877)
T KOG1059|consen 216 YL------QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAV 284 (877)
T ss_pred cc------cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheee
Confidence 52 346777888876655445555667778888777765444 48999999987643 34444444433
Q ss_pred hccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccC
Q 001796 792 RFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICS 871 (1012)
Q Consensus 792 ~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s 871 (1012)
+++.+. ++.-..+ + =.+..|-.++.+.++..|--+.-|++.+.. .|..
T Consensus 285 s~s~g~-~d~~asi-q-LCvqKLr~fiedsDqNLKYlgLlam~KI~k--------------------------tHp~--- 332 (877)
T KOG1059|consen 285 SMSSGM-SDHSASI-Q-LCVQKLRIFIEDSDQNLKYLGLLAMSKILK--------------------------THPK--- 332 (877)
T ss_pred hhccCC-CCcHHHH-H-HHHHHHhhhhhcCCccHHHHHHHHHHHHhh--------------------------hCHH---
Confidence 333331 1111111 1 146777788889999999999999999844 2221
Q ss_pred CCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhc
Q 001796 872 ESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQE 912 (1012)
Q Consensus 872 ~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~ 912 (1012)
. | ..--...+++|.+.++.++..|+.-|..+.+.
T Consensus 333 -----~-V-qa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 333 -----A-V-QAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred -----H-H-HHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 0 1 01123457899999999999999999999874
No 121
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00017 Score=73.82 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=46.0
Q ss_pred CCCceecccccccCCCceecCCCccccHHHHHH-HHhcCCCCCCCCCcccCC
Q 001796 258 PLNAFKCRITGTVMMDPVSLYTGTTCERAAIEA-WLDRREKTDPETGVVLED 308 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~-~~~~~~~~cp~~~~~l~~ 308 (1012)
+..+|.|+||++.|.+|+-+.|||-||-.||-. |-.+....||.||++...
T Consensus 212 p~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 212 PLADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred cccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence 346999999999999999999999999999999 988877789999987644
No 122
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.23 E-value=0.011 Score=62.44 Aligned_cols=256 Identities=15% Similarity=0.047 Sum_probs=159.7
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCC-CchHHHHHHHHHHhccCCCCHHHHHHHHh-hc
Q 001796 689 LDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEND-AKHDVQMAAAGLLANLPKSELSLTMKLIE-LD 766 (1012)
Q Consensus 689 l~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~-~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~-~g 766 (1012)
++.-++-.+--|..++.++... ++.+.....+...-..++.++++. .+.+.|.+..-++|-|+. ++...+.+-+ ..
T Consensus 158 ~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~d 235 (432)
T COG5231 158 SQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 3333455667777888887765 344444444555667788888665 347889999999999987 5655544432 34
Q ss_pred cHHHHHHHhcCC-ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHHHhhccCCcC
Q 001796 767 GLNAIINILKSG-TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG---SITAKARAAALIGTLSTSSPK 842 (1012)
Q Consensus 767 ~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~~vk~~Aa~aL~nLs~~~~~ 842 (1012)
.+.-|+.+.+.. ...+-+-+++++.|++...-...-..+.-.|-+..-|++|..+ +++++...-..=..+-.++..
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 566677777654 4567788899999988732112222233334455556666543 455655544444444333333
Q ss_pred CccCCC-----CCcccccCCCCCccccccCCccCCCcchhhhh--cCcchHHHHhccCCChH-HHHHHHHHHHHHhhccc
Q 001796 843 FTDMPE-----SAGCWCFRPSRAHLCQVHGGICSESTSFCLLK--ANALPHLVKLLQGRVHA-TAYEAIQTLSTLVQEGC 914 (1012)
Q Consensus 843 l~~~~~-----~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~--~gai~~Lv~lL~~~~~~-v~~~Al~aL~~L~~~~~ 914 (1012)
++-.-. ..+..|-+|+-..---++.|. ..+.+ -..+..|.++|+..+++ ....|+.-+..+...
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~------d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~-- 387 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNL------DMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRA-- 387 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhH------HHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHh--
Confidence 331100 123334333211111133331 33333 35678899999987776 455588888888865
Q ss_pred hhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHh
Q 001796 915 QQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVF 954 (1012)
Q Consensus 915 ~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~ 954 (1012)
.|++...+.+-||-+.+++++.+++++++..|..++..+.
T Consensus 388 ~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 388 SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 6999999999999999999999999999999999987765
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.16 E-value=0.0012 Score=58.28 Aligned_cols=86 Identities=21% Similarity=0.205 Sum_probs=70.5
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhh
Q 001796 464 ILFLVTLI-KGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLG 542 (1012)
Q Consensus 464 i~~Lv~lL-~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 542 (1012)
||.|+..| +++++.++..|+.+|..+- ...+++.|+++++++++.+|..++.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57889988 7889999999999998652 2356999999999999999999999999772
Q ss_pred hcCChHHHHhhhcCCC-hhHHHHHHHHHH
Q 001796 543 KEGIIPPLLGLVGSGN-FQSKELSLSVLV 570 (1012)
Q Consensus 543 ~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~ 570 (1012)
...+++.|.+++.+++ ..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4558999999997754 556888888874
No 124
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.13 E-value=0.0019 Score=57.04 Aligned_cols=87 Identities=31% Similarity=0.407 Sum_probs=70.7
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHH
Q 001796 725 LEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRN 804 (1012)
Q Consensus 725 i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~ 804 (1012)
|+.|++.|.++.+..++..|+.+|+++.. + .+++.|.++++++++.++..|+.+|..+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 57889999556688999999999997642 2 359999999999999999999999999831
Q ss_pred HHHcCCHHHHHHHHhcC-CHHHHHHHHHHHH
Q 001796 805 VVERGVYPLLVNLLQIG-SITAKARAAALIG 834 (1012)
Q Consensus 805 i~~~g~i~~Lv~lL~s~-~~~vk~~Aa~aL~ 834 (1012)
...++.|.+++.++ +..+|..|+.+|+
T Consensus 61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23789999999875 4567999998884
No 125
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.08 E-value=0.0004 Score=79.02 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=55.9
Q ss_pred CCCceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccC-HHHHHHHHHHH
Q 001796 258 PLNAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSN-SPLRQSIEEWK 325 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n-~~l~~~i~~~~ 325 (1012)
+.+++.||+|..++.||+.. .|||.||+.||.+|... +..||.+++.+......|+ ..+++.+..|-
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 55789999999999999995 99999999999999988 8899999988876666653 34566666553
No 126
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.045 Score=63.31 Aligned_cols=257 Identities=19% Similarity=0.273 Sum_probs=153.0
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcch
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGV 715 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~ 715 (1012)
+...|..+....+ ..++.+|+.+|..|.... +.-+.. ....++++.+....+|.+|+.++..++...+...
T Consensus 199 ~~~~l~~~~~~~D--~~Vrt~A~eglL~L~eg~--kL~~~~-----Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~ 269 (823)
T KOG2259|consen 199 AARGLIYLEHDQD--FRVRTHAVEGLLALSEGF--KLSKAC-----YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPL 269 (823)
T ss_pred HHHHHHHHhcCCC--cchHHHHHHHHHhhcccc--cccHHH-----HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4444555555544 448888988888885521 122222 3567888999999999999998888776542111
Q ss_pred HH----hhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHH
Q 001796 716 VE----YLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALF 791 (1012)
Q Consensus 716 ~~----~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 791 (1012)
.. .-....+...+...++.. ...++..|+.+|+.+...+.++...-++..++..+-+ . ....+.......
T Consensus 270 e~e~~e~kl~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRR----k-r~ahkrpk~l~s 343 (823)
T KOG2259|consen 270 ERESEEEKLKDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRR----K-RTAHKRPKALYS 343 (823)
T ss_pred cchhhhhhhHHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhh----h-hhcccchHHHHh
Confidence 00 001123444455555544 4456777787777765544443333332222221110 0 001111112222
Q ss_pred hc--cC--------C---CCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCC
Q 001796 792 RF--TD--------P---TNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPS 858 (1012)
Q Consensus 792 ~L--s~--------~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~ 858 (1012)
+- +. + .+.+ ..-++..|+--.+|.-|.+.--+||++|..+++.|+.+++.
T Consensus 344 ~GewSsGk~~~advpsee~d~~-~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~---------------- 406 (823)
T KOG2259|consen 344 SGEWSSGKEWNADVPSEEDDEE-EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG---------------- 406 (823)
T ss_pred cCCcccCccccccCchhhcccc-ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC----------------
Confidence 22 11 0 1111 24567788889999999988889999999999999776652
Q ss_pred CCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccC
Q 001796 859 RAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWG 938 (1012)
Q Consensus 859 ~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~ 938 (1012)
|. ..++.-|++++.++...|...|..+|..++.. -.| +..-++.+...+.+.
T Consensus 407 -----------------FA---~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-------l~i-~eeql~~il~~L~D~ 458 (823)
T KOG2259|consen 407 -----------------FA---VRALDFLVDMFNDEIEVVRLKAIFALTMISVH-------LAI-REEQLRQILESLEDR 458 (823)
T ss_pred -----------------cH---HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-------hee-cHHHHHHHHHHHHhc
Confidence 22 35778899999998889999999999998863 111 112344556666667
Q ss_pred ChhhHhHHHHHHHH
Q 001796 939 TDSLKEEALGFLEK 952 (1012)
Q Consensus 939 ~~~~~~~a~~aL~~ 952 (1012)
++++|+....+|.+
T Consensus 459 s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 459 SVDVREALRELLKN 472 (823)
T ss_pred CHHHHHHHHHHHHh
Confidence 77777665555544
No 127
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.06 E-value=0.11 Score=59.63 Aligned_cols=263 Identities=15% Similarity=0.145 Sum_probs=156.0
Q ss_pred hhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccC---chHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 001796 633 LEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKS---EAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSH 709 (1012)
Q Consensus 633 ~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~---~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~ 709 (1012)
...++..++.+|++.. ++++.+|+.....|+.- ..+ .+.+...|. .|.+-+....+++.-..+++++.+..
T Consensus 602 l~~ivStiL~~L~~k~--p~vR~~aadl~~sl~~vlk~c~e--~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~s 675 (975)
T COG5181 602 LSMIVSTILKLLRSKP--PDVRIRAADLMGSLAKVLKACGE--TKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYS 675 (975)
T ss_pred hHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHhcch--HHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhh
Confidence 3567888888888855 56899998887776431 111 134444553 46777888889988888888887654
Q ss_pred CCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHH---HHHHHHhhccHHHHHHHhcCCChhHHHHH
Q 001796 710 HEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELS---LTMKLIELDGLNAIINILKSGTMEAKENA 786 (1012)
Q Consensus 710 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a 786 (1012)
...-... +---.+.+|.|.-+|++. ...++.+....+..++...++ .+.++. +---|++.|++.+.+++++|
T Consensus 676 v~~~~~m-qpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A 750 (975)
T COG5181 676 VHRFRSM-QPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNA 750 (975)
T ss_pred hhccccc-CCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhh
Confidence 3221110 001157899999999876 556777777666666665554 233332 23347788888899999999
Q ss_pred HHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCcccccc
Q 001796 787 LSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVH 866 (1012)
Q Consensus 787 ~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~ 866 (1012)
..++..++..-.|+ +++..|.+-|+...-..|.-.+-|++-.++
T Consensus 751 ~~tfG~Is~aiGPq--------dvL~~LlnnLkvqeRq~RvctsvaI~iVae---------------------------- 794 (975)
T COG5181 751 TETFGCISRAIGPQ--------DVLDILLNNLKVQERQQRVCTSVAISIVAE---------------------------- 794 (975)
T ss_pred hhhhhhHHhhcCHH--------HHHHHHHhcchHHHHHhhhhhhhhhhhhHh----------------------------
Confidence 99999887653333 234444444444322222222333333311
Q ss_pred CCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHH
Q 001796 867 GGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEA 946 (1012)
Q Consensus 867 ~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a 946 (1012)
.|.+ -.++|.|..=-+.++..|+...+.|++.+..- ..+...+.+.. -.|.|.+.|.+.++.-|.-|
T Consensus 795 --~cgp--------fsVlP~lm~dY~TPe~nVQnGvLkam~fmFey-ig~~s~dYvy~--itPlleDAltDrD~vhRqta 861 (975)
T COG5181 795 --YCGP--------FSVLPTLMSDYETPEANVQNGVLKAMCFMFEY-IGQASLDYVYS--ITPLLEDALTDRDPVHRQTA 861 (975)
T ss_pred --hcCc--------hhhHHHHHhcccCchhHHHHhHHHHHHHHHHH-HHHHHHHHHHH--hhHHHHhhhcccchHHHHHH
Confidence 0100 13456666555557778888899998887752 01222233321 23444556666666666666
Q ss_pred HHHHHHHhc
Q 001796 947 LGFLEKVFM 955 (1012)
Q Consensus 947 ~~aL~~l~~ 955 (1012)
+.++.++..
T Consensus 862 ~nvI~Hl~L 870 (975)
T COG5181 862 MNVIRHLVL 870 (975)
T ss_pred HHHHHHHhc
Confidence 666666554
No 128
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.025 Score=63.74 Aligned_cols=302 Identities=15% Similarity=0.050 Sum_probs=179.2
Q ss_pred HHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-ccchhhHhhhcCChHHHHhhhcCCCh
Q 001796 481 CAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL-VDSNLELLGKEGIIPPLLGLVGSGNF 559 (1012)
Q Consensus 481 ~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~ 559 (1012)
.++..|..++..-.--|.-+.+..+.++|+++|..++..+.-.+...++|+.. ..+-+..+...|.|..|++++.+.|.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34445556654333456667788999999999998776677778888898877 45568889999999999999999889
Q ss_pred hHHHHHHHHHHHhcCCCch--HHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccc--eecccCCccchhH
Q 001796 560 QSKELSLSVLVKLSGCSKN--RELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKF--LVDEKGNRLELEP 635 (1012)
Q Consensus 560 ~~~~~a~~~L~~Ls~~~~~--~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~--~~~~~g~~l~~~~ 635 (1012)
.++.++.|+|+++.-..++ +-+....-++..++++.+..... +++++..+|.|+..+.++. ..+..-+..-...
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~--vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFK--VQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccc--cHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 9999999999999965544 44556677789999998876555 4589999999999854331 1111111111123
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhc-CcHHHHHHhhcCC------CHH-----HHHHHHHH
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKA-NGVSLILSLLDDT------DSE-----VREIAINL 703 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~-g~v~~Lv~ll~~~------~~~-----v~~~a~~~ 703 (1012)
....|+......++ .++ +..+.+|.+++...++ .+..+.+. ..+..+-+.+... .|. +-..-...
T Consensus 566 lfk~l~~k~e~~np-~~i-~~~~yilv~~aa~d~~-l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~ 642 (743)
T COG5369 566 LFKRLIDKYEENNP-MEI-LEGCYILVRNAACDDT-LDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT 642 (743)
T ss_pred HHHHHHHHHHhcCc-hhh-hhhHHHHHHHHhccch-HHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence 45556666655443 233 4447788887776665 34444332 2233332222110 000 00000000
Q ss_pred HHHhccCCCcchHHhhhcCCCh--HHHHHhh--cCCCchHHHHHHHHHHhccCCC---------CHHHHHHHHhhccHHH
Q 001796 704 LFLFSHHEPEGVVEYLLKPKRL--EALVGFL--ENDAKHDVQMAAAGLLANLPKS---------ELSLTMKLIELDGLNA 770 (1012)
Q Consensus 704 L~~ls~~~~~~~~~~l~~~~~i--~~Lv~lL--~~~~~~~~~~~Aa~aL~nL~~~---------~~~~~~~l~~~g~i~~ 770 (1012)
.-+++.. .+.. +.+.. |++=..= ...++.+.-.+..|.+.|+.-. +.+..+.+.+.|.-+.
T Consensus 643 ~v~l~e~-~d~f-----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~ 716 (743)
T COG5369 643 IVNLSEN-SDKF-----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREW 716 (743)
T ss_pred eeccccc-cccc-----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHH
Confidence 0011110 0000 00000 1111010 1112344555566666665432 1244455667777777
Q ss_pred HHHHhcCCChhHHHHHHHHHHhc
Q 001796 771 IINILKSGTMEAKENALSALFRF 793 (1012)
Q Consensus 771 Lv~lL~~~~~~~~~~a~~aL~~L 793 (1012)
+..+..++++.+++++-.+|.++
T Consensus 717 l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 717 LVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHhccCcHHHHHHHHHHHHhh
Confidence 77777778889999999999887
No 129
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.02 E-value=0.00069 Score=57.26 Aligned_cols=43 Identities=26% Similarity=0.347 Sum_probs=34.0
Q ss_pred CCceecccccccCCCc-------------eecCCCccccHHHHHHHHhcCCCCCCCCC
Q 001796 259 LNAFKCRITGTVMMDP-------------VSLYTGTTCERAAIEAWLDRREKTDPETG 303 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dP-------------v~~~~g~t~~r~~i~~~~~~~~~~cp~~~ 303 (1012)
.++- |+||++.|.|| +...|||.|-..||++|+.. +.+||.||
T Consensus 18 ~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR 73 (73)
T PF12678_consen 18 ADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR 73 (73)
T ss_dssp CCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred cCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence 3443 99999999555 33489999999999999987 55999986
No 130
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.031 Score=66.19 Aligned_cols=305 Identities=16% Similarity=0.150 Sum_probs=164.5
Q ss_pred ccccccccccC-ChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhh
Q 001796 418 WDHIVPCLGRD-PSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEEN 496 (1012)
Q Consensus 418 i~~lv~lL~~~-~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~ 496 (1012)
..++.+.+.++ +-+++.|+.....+-..+ ..+....|.++.|..++.+.++.+..+|..+|..+...++..
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~--------~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~ 194 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDID--------PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSV 194 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCC--------hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCC
Confidence 34566666554 455555555555553322 344567799999999999999999999999999998666542
Q ss_pred HHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCC
Q 001796 497 FCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCS 576 (1012)
Q Consensus 497 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 576 (1012)
.......-.+..++..|..-++..+.....++.+-...++ +.. ...+..+...|.+.+..+.-.+..++.++....
T Consensus 195 ~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 195 NLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REA---EDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred CcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 2222333344445555555555566655555554433332 110 122344444555556666666666666666443
Q ss_pred chHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc-----------cCccceecccCCccchhHHH--------
Q 001796 577 KNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS-----------DGIKFLVDEKGNRLELEPIV-------- 637 (1012)
Q Consensus 577 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~-----------~~~~~~~~~~g~~l~~~~~v-------- 637 (1012)
.......-....++|+.++.+.+ .. ..-+|.|+.. +-..+++...........-+
T Consensus 271 ~~~~~~~~~K~~~pl~tlls~~~-e~-----qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~ 344 (734)
T KOG1061|consen 271 KQVNELLFKKVAPPLVTLLSSES-EI-----QYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN 344 (734)
T ss_pred HHHHHHHHHHhcccceeeecccc-hh-----hHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh
Confidence 33333333344566666665554 21 1223333322 11111111111111001111
Q ss_pred ----HHHH-HHHhc-cCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 001796 638 ----TNLL-TLQQN-FNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHE 711 (1012)
Q Consensus 638 ----~~Ll-~ll~~-~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~ 711 (1012)
..++ .+..- +.-+.+....+++++.+++..-+. ..+.|+.|+++++..-..+...+...++.+-...
T Consensus 345 ~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRky 417 (734)
T KOG1061|consen 345 DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILRKY 417 (734)
T ss_pred HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhcC
Confidence 1111 11111 123345677888888888653321 1677899999998877777788888888776655
Q ss_pred CcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCC
Q 001796 712 PEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPK 753 (1012)
Q Consensus 712 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~ 753 (1012)
|.... ..++.+..-+.+=++++.+.+-.|+|+.-+.
T Consensus 418 P~~~~------~vv~~l~~~~~sl~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 418 PNKYE------SVVAILCENLDSLQEPEAKAALIWILGEYAE 453 (734)
T ss_pred CCchh------hhhhhhcccccccCChHHHHHHHHHHhhhhh
Confidence 54431 1233444444444556666666677765554
No 131
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00058 Score=76.55 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=48.0
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHHHhc----CCCCCCCCCcccCCCCCccC
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR----REKTDPETGVVLEDTSLRSN 314 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~----~~~~cp~~~~~l~~~~l~~n 314 (1012)
.+..||||++.-.=|+.+.|||-||-.||-.+|.. +.+.||.|+..+...+|.|-
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred cCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 38999999999999999999999999999998864 45689999998877666654
No 132
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.92 E-value=0.00051 Score=72.83 Aligned_cols=65 Identities=22% Similarity=0.388 Sum_probs=53.9
Q ss_pred CCCceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCCCC----CccCHHHHHHHHH
Q 001796 258 PLNAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLEDTS----LRSNSPLRQSIEE 323 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~----l~~n~~l~~~i~~ 323 (1012)
+-....|++|..+|.|+-+| .|=|||||+||-+++.. ..+||.|+-.+..+. +.+..+|.+++.+
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 34588999999999999988 89999999999999998 889999988775543 5566667776554
No 133
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.91 E-value=0.0011 Score=68.16 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=58.5
Q ss_pred ceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcc-cCCCCCccCHHHHHHHHHHHHHc
Q 001796 261 AFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVV-LEDTSLRSNSPLRQSIEEWKELN 328 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~-l~~~~l~~n~~l~~~i~~~~~~~ 328 (1012)
.+.||+|+-|++.|+-+ .|||+||..||+-.+......||.|..+ .--..|.|.+..+..|+.+...+
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 49999999999999999 8899999999999887768899999653 33457899999999999888754
No 134
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.066 Score=61.01 Aligned_cols=347 Identities=16% Similarity=0.160 Sum_probs=179.6
Q ss_pred cCCcccccccccc-CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC
Q 001796 415 YGGWDHIVPCLGR-DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVD 493 (1012)
Q Consensus 415 ~g~i~~lv~lL~~-~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~ 493 (1012)
.+.+++++..++. |..++-.|...|+|+.+-..+. .+.--......+.++..+.+..+ ..+++.|-.+-..-
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~------v~~~Fn~iFdvL~klsaDsd~~V-~~~aeLLdRLikdI 155 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE------VLVYFNEIFDVLCKLSADSDQNV-RGGAELLDRLIKDI 155 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC------cccchHHHHHHHHHHhcCCcccc-ccHHHHHHHHHHHh
Confidence 4567788888854 6788889999999998754331 11111223344444544444443 34445544442100
Q ss_pred -hhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHh
Q 001796 494 -EENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKL 572 (1012)
Q Consensus 494 -~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L 572 (1012)
.+....+--.+.||.|-+.+..-++.+|...+.-|..|-..++-...=.-....+.|..+|++.+++++..+-.+|.+.
T Consensus 156 Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 156 VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 0000122233445555555555678888888877777655444332222245677888899988888887776655544
Q ss_pred ----cCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccC
Q 001796 573 ----SGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFN 648 (1012)
Q Consensus 573 ----s~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~ 648 (1012)
.+.|..- --...++.++.-+.+..
T Consensus 236 L~eI~s~P~s~---d~~~~i~vlv~~l~ss~------------------------------------------------- 263 (675)
T KOG0212|consen 236 LAEIRSSPSSM---DYDDMINVLVPHLQSSE------------------------------------------------- 263 (675)
T ss_pred HHHHhcCcccc---CcccchhhccccccCCc-------------------------------------------------
Confidence 2232221 00112333343333332
Q ss_pred CChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHH-HHHHHHH----HHHHhccCCCcchHHhhhc-C
Q 001796 649 SSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSE-VREIAIN----LLFLFSHHEPEGVVEYLLK-P 722 (1012)
Q Consensus 649 ~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~-v~~~a~~----~L~~ls~~~~~~~~~~l~~-~ 722 (1012)
+.++..|+.-+.....-++.. -...-.|.+..+++++.+..+. +++.+.. ++...+.....+ . ++ .
T Consensus 264 --~~iq~~al~Wi~efV~i~g~~--~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~---~-id~~ 335 (675)
T KOG0212|consen 264 --PEIQLKALTWIQEFVKIPGRD--LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKE---E-IDYG 335 (675)
T ss_pred --HHHHHHHHHHHHHHhcCCCcc--hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhcc---c-cchH
Confidence 334444444444443332221 1111234444555555554332 3333321 111121110000 0 11 1
Q ss_pred CChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCH-HH
Q 001796 723 KRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNL-EA 801 (1012)
Q Consensus 723 ~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~-~~ 801 (1012)
..++.|.+.+.++ ..+.+.++..-+..|-...+. .-........+.|+.-|.+.+..+...+...+.+++...+. .+
T Consensus 336 ~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~ 413 (675)
T KOG0212|consen 336 SIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL 413 (675)
T ss_pred HHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH
Confidence 3345555555555 455666665444444333332 22223456788888889999999999999999999986322 11
Q ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 802 QRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 802 ~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
++ ++..|.++....+.-.+..+.-.++.+
T Consensus 414 ~~------fl~sLL~~f~e~~~~l~~Rg~lIIRql 442 (675)
T KOG0212|consen 414 RK------FLLSLLEMFKEDTKLLEVRGNLIIRQL 442 (675)
T ss_pred HH------HHHHHHHHHhhhhHHHHhhhhHHHHHH
Confidence 11 233444444455555777788888887
No 135
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.84 E-value=0.12 Score=60.52 Aligned_cols=238 Identities=14% Similarity=0.126 Sum_probs=154.2
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC-----ChHHHHHHHHHHHhccc-ccchhhHhhh-cC
Q 001796 473 GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG-----AESSRILMMKALLSMEL-VDSNLELLGK-EG 545 (1012)
Q Consensus 473 ~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~-~~~~~~~i~~-~g 545 (1012)
..+.++...|.+.|.|+...++..+....+.|+.+.+++.|+.. +.+......+.|+-++. ....+..+++ .+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45778999999999999999999999999999999999999877 78888889998887766 5566766665 57
Q ss_pred ChHHHHhhhcC-----------------CChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcC-------CCC
Q 001796 546 IIPPLLGLVGS-----------------GNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSS-------HVP 601 (1012)
Q Consensus 546 ~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~ 601 (1012)
++..++..|.. .+......++++++|+..+......-...+.++.++.++..- ...
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888776621 123467789999999986544332223345667776665533 122
Q ss_pred hhHHHHHHHHHHHhhccCccceec--ccC----CccchhHHHHHHHHHHhccCCC------hhhHHHHHHHHHHhccCch
Q 001796 602 SNIIVKCSEILEKLSSDGIKFLVD--EKG----NRLELEPIVTNLLTLQQNFNSS------YNVRKPALRALFRICKSEA 669 (1012)
Q Consensus 602 ~~~~~~a~~~L~nLa~~~~~~~~~--~~g----~~l~~~~~v~~Ll~ll~~~~~~------~~~~~~al~aL~~L~~~~~ 669 (1012)
......+..+|.|+--.....++. ..+ ..-..-..+..|+.++...-.. .+.-.-.+.+|..++....
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 234466677777763311111000 000 0012245666666666542111 1233445566666666543
Q ss_pred HHHHHHHHh---------------cCc-HHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 001796 670 ELVKIAVVK---------------ANG-VSLILSLLDDTDSEVREIAINLLFLFSHHE 711 (1012)
Q Consensus 670 ~~~~~~i~~---------------~g~-v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~ 711 (1012)
. +|+.+.. .+. -..|+.++.++.+.++..+..+|..|+..+
T Consensus 283 ~-~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 283 E-VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred H-HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 3 4555544 222 336889988888889999988888887653
No 136
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00073 Score=75.64 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=58.5
Q ss_pred cCCCCCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCC-----CCccCHHHHHHHHHHHHH
Q 001796 255 YIQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDT-----SLRSNSPLRQSIEEWKEL 327 (1012)
Q Consensus 255 ~~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~-----~l~~n~~l~~~i~~~~~~ 327 (1012)
+..++.+|-|-||..++.+||+++|||+||+.||.+-++. ..-||.|+.++.+. ...+|+.+..+|..|++.
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445789999999999999999999999999999997774 67899999888642 223566677777777765
No 137
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.82 E-value=0.34 Score=59.24 Aligned_cols=446 Identities=14% Similarity=0.113 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCC
Q 001796 478 SAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSG 557 (1012)
Q Consensus 478 ~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~ 557 (1012)
.+..++.+........++ ..++....+..-++-+...+.+|..++.-+++++..-.. .....+.+|.++++..++
T Consensus 214 sr~sacglf~~~~~~~~~---~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~Dd 288 (759)
T KOG0211|consen 214 SRLSACGLFGKLYVSLPD---DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDD 288 (759)
T ss_pred cchhhhhhhHHhccCCCh---HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcc
Confidence 455555555554422221 112222222233333455778888888888888774443 677899999999999888
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhcc-CccceecccCCccchhHH
Q 001796 558 NFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSD-GIKFLVDEKGNRLELEPI 636 (1012)
Q Consensus 558 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~-~~~~~~~~~g~~l~~~~~ 636 (1012)
...+++.|...+.++...-+..... ..-..+.++....++.... ....+.....|... +.+ + .....
T Consensus 289 qdsVr~~a~~~~~~l~~l~~~~~d~-~~~~~~~l~~~~~d~~~~v--~~~~~~~~~~L~~~~~~~------~---~~~~~ 356 (759)
T KOG0211|consen 289 QDSVREAAVESLVSLLDLLDDDDDV-VKSLTESLVQAVEDGSWRV--SYMVADKFSELSSAVGPS------A---TRTQL 356 (759)
T ss_pred hhhHHHHHHHHHHHHHHhcCCchhh-hhhhhHHHHHHhcChhHHH--HHHHhhhhhhHHHHhccc------c---Ccccc
Confidence 7889999988888887422111111 1124567777776665442 24444455555430 100 0 00112
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchH
Q 001796 637 VTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVV 716 (1012)
Q Consensus 637 v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~ 716 (1012)
++....++.... .+.+..+..-...++.+-.......+.....++.+-.++.+.+..++.+.+.....++.-.+...
T Consensus 357 ~~~~~~l~~~~~--~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~- 433 (759)
T KOG0211|consen 357 VPPVSNLLKDEE--WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER- 433 (759)
T ss_pred hhhHHHHhcchh--hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc-
Confidence 333444443322 11223222222223222110012333344445666666666666676665544444433222111
Q ss_pred HhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCC
Q 001796 717 EYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDP 796 (1012)
Q Consensus 717 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~ 796 (1012)
.-....|.++..++.. ...++.+....+..+-...............+|.+.++-.....+++......+..++..
T Consensus 434 ---ti~~llp~~~~~l~de-~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q 509 (759)
T KOG0211|consen 434 ---TISELLPLLIGNLKDE-DPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQ 509 (759)
T ss_pred ---CccccChhhhhhcchh-hHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHh
Confidence 0123344444444443 445555555433333222222234445566688888877666777888888877777664
Q ss_pred CCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcch
Q 001796 797 TNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSF 876 (1012)
Q Consensus 797 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~ 876 (1012)
.. ..+...-.-+.+...+.+....++++|+.-+.-++. ..+. .
T Consensus 510 ~~----~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~--------------------------~~G~-------~ 552 (759)
T KOG0211|consen 510 LG----VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE--------------------------TFGS-------E 552 (759)
T ss_pred hh----hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH--------------------------HhCc-------c
Confidence 21 122222244445555555566788888887777632 1111 0
Q ss_pred hhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 877 CLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 877 ~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
+- ....++.++....+.+-..+...+.++..|+. -.-..+....-++.+.++..+..+.+|-+++..|..+...
T Consensus 553 w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~-----v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 553 WA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE-----VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred hh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH-----HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhh
Confidence 00 13455565655554445555556666665543 1222333335677888888899999999999999999875
Q ss_pred --HhhHhhhcccccchhhhhhhhcccCCchHHHHHHHHHHHH
Q 001796 957 --KEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLI 996 (1012)
Q Consensus 957 --~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L 996 (1012)
...++++- ...+..|.+ +.+..+|-.|..++..+
T Consensus 627 L~~~~~~~~v---~pll~~L~~---d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 627 LDESVRDEEV---LPLLETLSS---DQELDVRYRAILAFGSI 662 (759)
T ss_pred cchHHHHHHH---HHHHHHhcc---CcccchhHHHHHHHHHH
Confidence 22222200 002223332 45556666666665543
No 138
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.073 Score=59.35 Aligned_cols=303 Identities=15% Similarity=0.125 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC-----CCcchHHhhhcCCChHH
Q 001796 653 VRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHH-----EPEGVVEYLLKPKRLEA 727 (1012)
Q Consensus 653 ~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~-----~~~~~~~~l~~~~~i~~ 727 (1012)
++-.+..+|..|+.+-+- .+...++. ...+-.-+.+..+.++..+.+++..+-.. .|+....-.. .+ +
T Consensus 271 ~rle~~qvl~~~a~~~~~-~~~~~~~l--~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q-~~---~ 343 (728)
T KOG4535|consen 271 MRLEALQVLTLLARYFSM-TQAYLMEL--GRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQ-RA---P 343 (728)
T ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhh-hc---c
Confidence 677777777777654321 11222111 12222234556788888888887765422 2222111110 11 1
Q ss_pred HHHhhc---------CCCchHHHHHHHHHHhccCCCCH----H--HHHHHH-hhccHHHHHHHhcCCChhHHHHHHHHHH
Q 001796 728 LVGFLE---------NDAKHDVQMAAAGLLANLPKSEL----S--LTMKLI-ELDGLNAIINILKSGTMEAKENALSALF 791 (1012)
Q Consensus 728 Lv~lL~---------~~~~~~~~~~Aa~aL~nL~~~~~----~--~~~~l~-~~g~i~~Lv~lL~~~~~~~~~~a~~aL~ 791 (1012)
+..++- .+.....+..++-++.++....- + .+..+. ..|+- .+.+.-++..|.+++.
T Consensus 344 fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~-------d~~~~lv~~aA~Ra~~ 416 (728)
T KOG4535|consen 344 FWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCN-------DSKNRLVKAAASRALG 416 (728)
T ss_pred HHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhccc-------chHHHHHHHHHHhhce
Confidence 111111 11123345666777777654111 1 011110 11111 1122235667777776
Q ss_pred hccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccC
Q 001796 792 RFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICS 871 (1012)
Q Consensus 792 ~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s 871 (1012)
-+.-+.... +....-.+........+.+..-.+|.+++++++|++. ..|.+.=+
T Consensus 417 VyVLHp~lr-~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITd-------------------------AL~~~~Ps 470 (728)
T KOG4535|consen 417 VYVLHPCLR-QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITD-------------------------ALIVNMPT 470 (728)
T ss_pred eEEeccchh-hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHH-------------------------HHHcCCCC
Confidence 665543222 2233334455556666666677899999999999953 11222111
Q ss_pred CCcchhhhhcCcchHHHHhc--cC-CChHHHHHHHHHHHHHhhc--cchhhhhHHhhhcCCchHHH-HHhccCChhhHhH
Q 001796 872 ESTSFCLLKANALPHLVKLL--QG-RVHATAYEAIQTLSTLVQE--GCQQRGVNVLHQEEAIKPTL-EILTWGTDSLKEE 945 (1012)
Q Consensus 872 ~~~~~~lv~~gai~~Lv~lL--~~-~~~~v~~~Al~aL~~L~~~--~~~~~~~~~i~~~~~v~~L~-~ll~s~~~~~~~~ 945 (1012)
+++..+-..+-.+..+++.- .+ .++.|...|..+|.|+..- ...+-+-..+.+ +.+..+. .....++-.+|=+
T Consensus 471 ~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WN 549 (728)
T KOG4535|consen 471 PDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWN 549 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchH
Confidence 22112211122222333321 11 3567888899999999852 111222233333 3333232 2334567789999
Q ss_pred HHHHHHHHhchHhhHhhh---cccccchhhhhhhhcccCCchHHHHHHHHHHHHHh
Q 001796 946 ALGFLEKVFMSKEMVDTY---GSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIER 998 (1012)
Q Consensus 946 a~~aL~~l~~~~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~ 998 (1012)
|+.++.|+++++.+.-+- +....-.|..|+-. +.|.++|..||.+|..-.+
T Consensus 550 aCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~--~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 550 ACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS--CKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH--hccceEeehhhhhhcCCCC
Confidence 999999999997753221 12221133333322 5788999999999985443
No 139
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.044 Score=63.44 Aligned_cols=210 Identities=12% Similarity=0.129 Sum_probs=134.9
Q ss_pred HHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCC----CCHHH-H
Q 001796 728 LVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDP----TNLEA-Q 802 (1012)
Q Consensus 728 Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~----~~~~~-~ 802 (1012)
|+.+.... +..++.+|+.+|..|+.+.. ..+. .....++++.+....++..|+.+++-+..- ...+. .
T Consensus 203 l~~~~~~~-D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQ-DFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCC-CcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 55555444 66788888888777776322 2222 356678889988889999886665544321 11111 1
Q ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCc------cCC-----------------CCCcccccCCCC
Q 001796 803 RNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFT------DMP-----------------ESAGCWCFRPSR 859 (1012)
Q Consensus 803 ~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~------~~~-----------------~~~~~~c~~~~~ 859 (1012)
..+. ..+...+...+++.+..+|..|+.+|+.+..-+..+- ++- .++.|..-+.+.
T Consensus 276 ~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 276 EKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred hhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccc
Confidence 1222 2367888899999999999999999988754333211 000 012232222111
Q ss_pred CccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCC
Q 001796 860 AHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGT 939 (1012)
Q Consensus 860 ~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~ 939 (1012)
...-..+. -+....++..|+-..+|.-|+++--+|..+|+..++.|+.. .+.... .++..|++.+.+..
T Consensus 355 advpsee~----d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s--sP~FA~-----~aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 355 ADVPSEED----DEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS--SPGFAV-----RALDFLVDMFNDEI 423 (823)
T ss_pred ccCchhhc----cccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC--CCCcHH-----HHHHHHHHHhccHH
Confidence 00000111 11225578899999999999988889999999999999974 222221 35678889999889
Q ss_pred hhhHhHHHHHHHHHhch
Q 001796 940 DSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 940 ~~~~~~a~~aL~~l~~~ 956 (1012)
..+|..|..+|..|..+
T Consensus 424 ~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999887
No 140
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.75 E-value=0.054 Score=62.00 Aligned_cols=258 Identities=15% Similarity=0.112 Sum_probs=148.7
Q ss_pred CcHHHHHHHhcCChHHHHHHHHHHHhcccccchh---hHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchH-H
Q 001796 505 WYKPLIDRIIQGAESSRILMMKALLSMELVDSNL---ELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNR-E 580 (1012)
Q Consensus 505 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~ 580 (1012)
++..++.+|++.++.+|..|+...+.|+..-.++ ..+...|. .|.+-|....+++.-..+.+++.+.+...-+ .
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3455677888899999999999888876632222 22223343 3556666677887777777777665432221 1
Q ss_pred HHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHH
Q 001796 581 LISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRA 660 (1012)
Q Consensus 581 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~a 660 (1012)
+---.|++|.|..+|++.+.. ++.+.+..
T Consensus 683 qpPi~~ilP~ltPILrnkh~K---------------------------------------------------v~~nti~l 711 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQK---------------------------------------------------VVANTIAL 711 (975)
T ss_pred CCchhhccccccHhhhhhhHH---------------------------------------------------HhhhHHHH
Confidence 111257788888888876533 22333333
Q ss_pred HHHhccCchHH--HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCch
Q 001796 661 LFRICKSEAEL--VKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKH 738 (1012)
Q Consensus 661 L~~L~~~~~~~--~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 738 (1012)
+..+|..+++. .++-|+= .=.|+++|.+.+.++|.+|...+++++...+.. .++..|++-|+..
T Consensus 712 vg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--------dvL~~LlnnLkvq--- 777 (975)
T COG5181 712 VGTICMNSPEYIGVREWMRI---CFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--------DVLDILLNNLKVQ--- 777 (975)
T ss_pred HHHHHhcCcccCCHHHHHHH---HHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--------HHHHHHHhcchHH---
Confidence 33333332221 2333321 123677788889999999999999988652211 2233333333322
Q ss_pred HHHHHHHHHH--hccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHH
Q 001796 739 DVQMAAAGLL--ANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVN 816 (1012)
Q Consensus 739 ~~~~~Aa~aL--~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~ 816 (1012)
+.|...+.++ +-.+. .-.-..++|.|..=-.++...++...+.+++.+-..-......- -+-..|.|-+
T Consensus 778 eRq~RvctsvaI~iVae-------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dY--vy~itPlleD 848 (975)
T COG5181 778 ERQQRVCTSVAISIVAE-------YCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDY--VYSITPLLED 848 (975)
T ss_pred HHHhhhhhhhhhhhhHh-------hcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHH--HHHhhHHHHh
Confidence 3333222221 11111 00112356666665566677788888888887743211111111 2346788888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcc
Q 001796 817 LLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 817 lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
.|.+.++--|..|+..+..|+-
T Consensus 849 AltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 849 ALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred hhcccchHHHHHHHHHHHHHhc
Confidence 9988899999999999999854
No 141
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.72 E-value=0.0024 Score=47.14 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=36.3
Q ss_pred cchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 535 DSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 535 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
++++..+++.|++|+|+++|.++++++++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999998899999999999999973
No 142
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.72 E-value=0.22 Score=51.89 Aligned_cols=262 Identities=14% Similarity=0.108 Sum_probs=148.2
Q ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHh
Q 001796 464 ILFLVTLIKGPVR--ESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 464 i~~Lv~lL~~~~~--~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
+..+.+.|...+. ..+.+|.-.|+++. ..+.+..+.+...+++...+.+.+-+|+. .
T Consensus 5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~-----------~~~~i~~i~ka~~d~s~llkhe~ay~LgQ----------~ 63 (289)
T KOG0567|consen 5 IETIGNILVNKSQPLQNRFRALFNLRNLL-----------GPAAIKAITKAFIDDSALLKHELAYVLGQ----------M 63 (289)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHhhhccC-----------ChHHHHHHHHhcccchhhhccchhhhhhh----------h
Confidence 3444455544222 34555555555553 23335555555555555555566666553 3
Q ss_pred hhcCChHHHHhhhcCCC--hhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc-c
Q 001796 542 GKEGIIPPLLGLVGSGN--FQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS-D 618 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~-~ 618 (1012)
....++|.|+..|.+.+ +-++..|..+|.++- .++ .++.+-+..+.. ...+.+.|..++..+-- +
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~---------~~~~l~k~~~dp--~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE---------SLEILTKYIKDP--CKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh---------hHHHHHHHhcCC--ccccchHHHHHHHHHHHhh
Confidence 45778999999887655 668889999998876 332 234444444222 22344666666666654 1
Q ss_pred Ccc------cee-cccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC
Q 001796 619 GIK------FLV-DEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD 691 (1012)
Q Consensus 619 ~~~------~~~-~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~ 691 (1012)
+.. .+. .+... -.+...+..|-..+...+-..--++.|...|.|+ ..+ .+|..+++-+..
T Consensus 132 ~~~~~~~~~p~~SvdPa~-p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~---g~E---------eaI~al~~~l~~ 198 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAP-PANLSSVHELRAELLDETKPLFERYRAMFYLRNI---GTE---------EAINALIDGLAD 198 (289)
T ss_pred ccccccccCccccCCCCC-ccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc---CcH---------HHHHHHHHhccc
Confidence 110 111 11111 1123335555444443322111123333333332 111 124556666777
Q ss_pred CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcC-CCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHH
Q 001796 692 TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN-DAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNA 770 (1012)
Q Consensus 692 ~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~ 770 (1012)
++.-.|..+.-+|+.+ ....+|+.|.+.|.. ...+-++..|+.+|+.++. + .+++.
T Consensus 199 ~SalfrhEvAfVfGQl------------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e---------~~~~v 255 (289)
T KOG0567|consen 199 DSALFRHEVAFVFGQL------------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E---------DCVEV 255 (289)
T ss_pred chHHHHHHHHHHHhhc------------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H---------HHHHH
Confidence 7777888888777655 334578899987743 3456788889999988765 2 24888
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcc
Q 001796 771 IINILKSGTMEAKENALSALFRFT 794 (1012)
Q Consensus 771 Lv~lL~~~~~~~~~~a~~aL~~Ls 794 (1012)
|.+++.+..+-+++.+..+|-.+-
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999998888888888877776553
No 143
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.0083 Score=67.44 Aligned_cols=120 Identities=11% Similarity=0.069 Sum_probs=102.4
Q ss_pred hhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCC
Q 001796 718 YLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPT 797 (1012)
Q Consensus 718 ~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~ 797 (1012)
-+......+.|+++|+.+ +..+.-.+.+.++|+...-.+.+..+++.|.|..|+.++.+.+...+.+..|+|.++..+.
T Consensus 426 gL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 426 GLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 355678899999999886 3445556788899998877778899999999999999999888899999999999998875
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 798 NLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 798 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
+...+-......++..++.+.+++...++...-+.|+|+.-
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 55555667778899999999999999999999999999954
No 144
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.63 E-value=0.13 Score=62.77 Aligned_cols=406 Identities=16% Similarity=0.126 Sum_probs=232.1
Q ss_pred CHHHHHHHHHHHHHHhccccchhhhhhhcCCccccccccccC-ChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHH
Q 001796 387 NKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRD-PSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGIL 465 (1012)
Q Consensus 387 ~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~~-~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~ 465 (1012)
.+.+|..++.-+..+++.-.. .+...+.++.+..+...+ ..+++.|+..+..+...-... .-......+
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~-------~d~~~~~~~ 319 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD-------DDVVKSLTE 319 (759)
T ss_pred chhhHHHHHhhhHHHHHHHHH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc-------hhhhhhhhH
Confidence 445555555555555543222 444455666666777554 477888887777765432110 011235668
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc--ccchhhHhhh
Q 001796 466 FLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL--VDSNLELLGK 543 (1012)
Q Consensus 466 ~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~ 543 (1012)
.++....++++..+...+.....+...- -........+++...+++....+.+..++.-...++. +.+....+..
T Consensus 320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~---~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~ 396 (759)
T KOG0211|consen 320 SLVQAVEDGSWRVSYMVADKFSELSSAV---GPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPD 396 (759)
T ss_pred HHHHHhcChhHHHHHHHhhhhhhHHHHh---ccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccch
Confidence 8888888888888877777666664211 1133344557777778877666777777776666665 4455667777
Q ss_pred cCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCC----hHHHHHHhhcCCCChhHHHHHHHHHHHhhccC
Q 001796 544 EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGG----IPQVLELMFSSHVPSNIIVKCSEILEKLSSDG 619 (1012)
Q Consensus 544 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~----i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~ 619 (1012)
..++|.+-.+..+.+..++...+.....++-.-. .... .|.++..+++.... +..+..+.+.++-.
T Consensus 397 ~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~------k~~ti~~llp~~~~~l~de~~~--V~lnli~~ls~~~~-- 466 (759)
T KOG0211|consen 397 SSILPEVQVLVLDNALHVRSALASVITGLSPILP------KERTISELLPLLIGNLKDEDPI--VRLNLIDKLSLLEE-- 466 (759)
T ss_pred hhhhHHHHHHHhcccchHHHHHhccccccCccCC------cCcCccccChhhhhhcchhhHH--HHHhhHHHHHHHHh--
Confidence 7778999888888888888777766666653211 1122 33444444333221 11222222221111
Q ss_pred ccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHH
Q 001796 620 IKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREI 699 (1012)
Q Consensus 620 ~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~ 699 (1012)
..+..|........++.+..+-... ..+++...+..+..++...+. .+...-.-+.+...+.+..-.+++.
T Consensus 467 ---v~~v~g~~~~s~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~~----~~~~~~~~~l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 467 ---VNDVIGISTVSNSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLGV----EFFDEKLAELLRTWLPDHVYSIREA 537 (759)
T ss_pred ---ccCcccchhhhhhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhhh----HHhhHHHHHHHHhhhhhhHHHHHHH
Confidence 1122233333455566666655442 245666666666666553321 1111112233344444455678888
Q ss_pred HHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCC
Q 001796 700 AINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGT 779 (1012)
Q Consensus 700 a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 779 (1012)
|+..+..++...+.... ....++.+......+ +--.+...+-++.-++ +-..+.+.....+|.+.++..+..
T Consensus 538 aa~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~-~y~~R~t~l~si~~la---~v~g~ei~~~~Llp~~~~l~~D~v 609 (759)
T KOG0211|consen 538 AARNLPALVETFGSEWA----RLEEIPKLLAMDLQD-NYLVRMTTLFSIHELA---EVLGQEITCEDLLPVFLDLVKDPV 609 (759)
T ss_pred HHHHhHHHHHHhCcchh----HHHhhHHHHHHhcCc-ccchhhHHHHHHHHHH---HHhccHHHHHHHhHHHHHhccCCc
Confidence 88887777655442221 123445555444332 2223333222222221 112344566677999999999999
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 780 MEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 780 ~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
+.+|-+++..|..+...-+. ...+..+.|.+..+..+.+.++|..|..|+..+
T Consensus 610 anVR~nvak~L~~i~~~L~~----~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 610 ANVRINVAKHLPKILKLLDE----SVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred hhhhhhHHHHHHHHHhhcch----HHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 99999999999988654222 344566789999999988888998888877766
No 145
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.62 E-value=0.22 Score=56.80 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCH-HHHHH---HHHHHHHhhcCChhhHHHHhhcCC
Q 001796 430 SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVR-ESAEC---AEKILQQLFDVDEENFCRAAKSGW 505 (1012)
Q Consensus 430 ~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~---A~~~L~~La~~~~~~~~~i~~~g~ 505 (1012)
-.|..|+++|+.+-+++. -+...+|+.+.++.. ..+.. -+.+...+...+++...++
T Consensus 205 isqYHalGlLyq~kr~dk--------------ma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~----- 265 (898)
T COG5240 205 ISQYHALGLLYQSKRTDK--------------MAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL----- 265 (898)
T ss_pred HHHHHHHHHHHHHhcccH--------------HHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----
Confidence 357789999998866541 245566777765431 11111 1222223333344444433
Q ss_pred cHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCC
Q 001796 506 YKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCS 576 (1012)
Q Consensus 506 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 576 (1012)
.|.|-.+|++.-+.+..+++++++.++...- ....+ ..++..|-.+|++.....+-.|.++|-.|+...
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv-~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV-GSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc-CHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 3566667777778889999999988776321 01111 235667777888888888999999999998643
No 146
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.12 Score=57.29 Aligned_cols=220 Identities=18% Similarity=0.212 Sum_probs=157.0
Q ss_pred hccCchHHHHHHhccCCCHHHHHHHHHHHHHHhccccch---------hhhhhhcCCcccccccccc-CChh------hH
Q 001796 370 SIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARN---------KEKVIDYGGWDHIVPCLGR-DPSI------SL 433 (1012)
Q Consensus 370 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~~~~---------~~~i~~~g~i~~lv~lL~~-~~~~------~~ 433 (1012)
.+-++++.|+.+|+. .+.++....+..|..|+..+..+ -+.+++.+.++.|+.-+.+ |.++ ..
T Consensus 122 veln~V~slL~LLgH-eNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~ 200 (536)
T KOG2734|consen 122 VELNAVQSLLELLGH-ENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVH 200 (536)
T ss_pred HHhccHHHHHHHhcC-CCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhH
Confidence 445778889999976 57888888888888887544321 2345566777777776633 3222 24
Q ss_pred HHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHH
Q 001796 434 AAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGP--VRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLID 511 (1012)
Q Consensus 434 ~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~ 511 (1012)
++.+.+-|+..-. +++|..+..+ |.+.-|..-+... -.....+|.++|.-+-..+.+++.......++..+++
T Consensus 201 ~~L~vveNlv~~r----~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~ 275 (536)
T KOG2734|consen 201 NTLAVVENLVEVR----PAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLR 275 (536)
T ss_pred HHHHHHHHHHhcc----HHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHh
Confidence 5567777776543 3455554444 7776666655543 2357889999999888888889999999999999998
Q ss_pred HHh----cC-----ChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCc---hH
Q 001796 512 RII----QG-----AESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSK---NR 579 (1012)
Q Consensus 512 lL~----~~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~ 579 (1012)
-+. .+ ..+...+--.+|+.+...+.|+..+....++....=+++. ....+..++++|-.....++ ++
T Consensus 276 ~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C 354 (536)
T KOG2734|consen 276 QLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC 354 (536)
T ss_pred hcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence 873 12 1234445556777777789999999998888887777765 45678889999999887665 67
Q ss_pred HHHHHcCChHHHHHHhh
Q 001796 580 ELISAAGGIPQVLELMF 596 (1012)
Q Consensus 580 ~~i~~~g~i~~Lv~lL~ 596 (1012)
..+++.+|+..+..+..
T Consensus 355 ~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 355 NKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHHHhHHHHHHHHh
Confidence 88899988888877665
No 147
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.25 Score=54.96 Aligned_cols=266 Identities=15% Similarity=0.182 Sum_probs=174.2
Q ss_pred HHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC--------CcchHHhhhcCCChHHHH
Q 001796 658 LRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHE--------PEGVVEYLLKPKRLEALV 729 (1012)
Q Consensus 658 l~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~--------~~~~~~~l~~~~~i~~Lv 729 (1012)
+.-+..++..|+ .-..+++.++|+.|+.+|.+.+.++..+.+.+|.-++..+ .+.....+++.++++.|+
T Consensus 105 IQ~mhvlAt~Pd--LYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 105 IQEMHVLATMPD--LYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHHhhhcChH--HHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 333455666665 5678899999999999999999999999999999987531 124556778889999999
Q ss_pred HhhcCC-----CchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC--ChhHHHHHHHHHHhccCCCCHHHH
Q 001796 730 GFLEND-----AKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG--TMEAKENALSALFRFTDPTNLEAQ 802 (1012)
Q Consensus 730 ~lL~~~-----~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~~~~~ 802 (1012)
+-+..= ....-..++.+++-|+..-.+.+...+++.|.+.-|+.-+... -..-+.+|..+|.-+-.. +.+.+
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~-s~e~~ 261 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN-SDENR 261 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc-Cchhh
Confidence 876321 1122345678899999998999999999999988888755433 234677888888877665 34456
Q ss_pred HHHHHcCCHHHHHHHHhc---CC---HHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcch
Q 001796 803 RNVVERGVYPLLVNLLQI---GS---ITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSF 876 (1012)
Q Consensus 803 ~~i~~~g~i~~Lv~lL~s---~~---~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~ 876 (1012)
.....-+++..+++-+.. .+ .+-++......-.| |..- .-++++.
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcL--------------------------Cs~l---m~~~nr~ 312 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCL--------------------------CSLL---MAPANRE 312 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHH--------------------------HHHh---cChhhhh
Confidence 667777888888776642 12 22222222222222 2111 1234557
Q ss_pred hhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc-cCCh---------hhHhHH
Q 001796 877 CLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT-WGTD---------SLKEEA 946 (1012)
Q Consensus 877 ~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~-s~~~---------~~~~~a 946 (1012)
.++.+.++..-.-+++. .......|+.+|-....+..-..++..+++..|...+..+.. .+.+ +.-++.
T Consensus 313 ~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv 391 (536)
T KOG2734|consen 313 RFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHV 391 (536)
T ss_pred hhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHH
Confidence 77778887665555553 333444588888888765212355667788888887777433 2222 334466
Q ss_pred HHHHHHHhch
Q 001796 947 LGFLEKVFMS 956 (1012)
Q Consensus 947 ~~aL~~l~~~ 956 (1012)
..+|+.+++.
T Consensus 392 ~siiaSl~~~ 401 (536)
T KOG2734|consen 392 CSILASLLRN 401 (536)
T ss_pred HHHHHHHHHh
Confidence 6666666653
No 148
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.49 E-value=0.14 Score=59.80 Aligned_cols=262 Identities=20% Similarity=0.199 Sum_probs=154.2
Q ss_pred HHHhcccccchhhHhhhcCChHHHHhhh----------cCCChhHHHHHHHHHHHhcC-CCchHHHHHHcCChHHHHHHh
Q 001796 527 ALLSMELVDSNLELLGKEGIIPPLLGLV----------GSGNFQSKELSLSVLVKLSG-CSKNRELISAAGGIPQVLELM 595 (1012)
Q Consensus 527 aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~g~i~~Lv~lL 595 (1012)
+|.-++.++.+-..+....++..|.++- ...+..+...|+++|.|+-. ++..|....+.|..+.+++.|
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~L 83 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERL 83 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHH
Confidence 4444555555555555555555555543 23457899999999999995 566788889999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHH
Q 001796 596 FSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIA 675 (1012)
Q Consensus 596 ~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~ 675 (1012)
+...... .+.++.-...++|+-++..... .+..
T Consensus 84 k~~~~~~----------------------------------------------~~~d~~Fl~~RLLFLlTa~~~~-~~~~ 116 (446)
T PF10165_consen 84 KNYSDSS----------------------------------------------QPSDVEFLDSRLLFLLTALRPD-DRKK 116 (446)
T ss_pred HcccccC----------------------------------------------CChhHHHHHHHHHHHHhcCChh-HHHH
Confidence 9873320 0012344455555555543333 3333
Q ss_pred HHh-cCcHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcC---
Q 001796 676 VVK-ANGVSLILSLLDD-----------------TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN--- 734 (1012)
Q Consensus 676 i~~-~g~v~~Lv~ll~~-----------------~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~--- 734 (1012)
+++ .+++..++..+.. ........+++++.|+..+.+....+ .....++.|+.++..
T Consensus 117 L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~--~~~~~~~~l~~il~~~l~ 194 (446)
T PF10165_consen 117 LIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPE--EFSPSIPHLVSILRRLLP 194 (446)
T ss_pred HHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccch--hhhHHHHHHHHHHHHHhc
Confidence 333 3555555544321 12345667788899988765544321 124556666665431
Q ss_pred -----CCchHHHHHHHHHHhccCCCCHHH-------HHHH----HhhccHHHHHHHhcCC----C----hhHHHHHHHHH
Q 001796 735 -----DAKHDVQMAAAGLLANLPKSELSL-------TMKL----IELDGLNAIINILKSG----T----MEAKENALSAL 790 (1012)
Q Consensus 735 -----~~~~~~~~~Aa~aL~nL~~~~~~~-------~~~l----~~~g~i~~Lv~lL~~~----~----~~~~~~a~~aL 790 (1012)
........+++.+|.|+....... ...+ .....+..|+.+|... . .+..--.+.+|
T Consensus 195 ~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL 274 (446)
T PF10165_consen 195 PPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLL 274 (446)
T ss_pred cCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHH
Confidence 122456778999999996533321 0000 1122455666665421 1 12344456666
Q ss_pred HhccCCCCHHHHHHHHH----------------cCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 791 FRFTDPTNLEAQRNVVE----------------RGVYPLLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 791 ~~Ls~~~~~~~~~~i~~----------------~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
.+++... ...|+.+.. ...-..|+.++.+..+.+|..++..|..|+.
T Consensus 275 ~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 275 TRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 6666642 344444433 1235668999988889999999999999954
No 149
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.47 E-value=0.0065 Score=44.76 Aligned_cols=38 Identities=34% Similarity=0.404 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 800 EAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 800 ~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
+.+..+.+.|++|.|+.++++++++++..|+++|+|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35677889999999999999999999999999999984
No 150
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.35 Score=57.54 Aligned_cols=326 Identities=17% Similarity=0.198 Sum_probs=164.9
Q ss_pred hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHH
Q 001796 430 SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPL 509 (1012)
Q Consensus 430 ~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~L 509 (1012)
-.|..|+++|+.+-+++. -++..++..+..+.......-+..++..+..-+++ .....-..+.+
T Consensus 187 m~QyHalglLyqirk~dr--------------la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl 250 (865)
T KOG1078|consen 187 MVQYHALGLLYQIRKNDR--------------LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKEN--QQADSPLFPFL 250 (865)
T ss_pred HHHHHHHHHHHHHHhhhH--------------HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhc--ccchhhHHHHH
Confidence 467889999998866542 23444555444322211111111222111111111 11122234445
Q ss_pred HHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchH---------H
Q 001796 510 IDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNR---------E 580 (1012)
Q Consensus 510 v~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~---------~ 580 (1012)
=.+|++....+..+|+.++.++..... ..+ ..++..|--+++++...+|-.|.++|..++...... .
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~~--r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTNS--REL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccCH--hhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 555666778888999999988765211 111 127778888888888899999999999998633221 1
Q ss_pred HHHHc---CChHHHHHHhhcCCCChh--HHHHHHHHHHHhhccCccceecccCCccc------hhHHHHHHHHHHhccCC
Q 001796 581 LISAA---GGIPQVLELMFSSHVPSN--IIVKCSEILEKLSSDGIKFLVDEKGNRLE------LEPIVTNLLTLQQNFNS 649 (1012)
Q Consensus 581 ~i~~~---g~i~~Lv~lL~~~~~~~~--~~~~a~~~L~nLa~~~~~~~~~~~g~~l~------~~~~v~~Ll~ll~~~~~ 649 (1012)
.|-+. =+-+.+..+|+.+.+... +.........+++. +-+..+.+.-..++ -...+.-|.+++.. ..
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disD-eFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~-eG 404 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISD-EFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLRE-EG 404 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc-cceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHh-cc
Confidence 11111 122344455555533211 11222222222221 11111100000000 01122333344444 33
Q ss_pred ChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHH
Q 001796 650 SYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALV 729 (1012)
Q Consensus 650 ~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv 729 (1012)
..+.+...+.++..+....+. . +.-++..|..+..+. +...-+..+|+.|...+|... .-...+...-
T Consensus 405 g~e~K~aivd~Ii~iie~~pd-s-----Ke~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~----~Pskyir~iy 472 (865)
T KOG1078|consen 405 GFEFKRAIVDAIIDIIEENPD-S-----KERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAP----NPSKYIRFIY 472 (865)
T ss_pred CchHHHHHHHHHHHHHHhCcc-h-----hhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCC----CcchhhHHHh
Confidence 344566666666666553222 1 123345555555543 344556667777765544321 1123333333
Q ss_pred HhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccC
Q 001796 730 GFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTD 795 (1012)
Q Consensus 730 ~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 795 (1012)
+.+--. +..++.+|..+|.+++..++..+ ..+...|.+.+.+.+.++++.|.-.|.++..
T Consensus 473 NRviLE-n~ivRaaAv~alaKfg~~~~~l~-----~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 473 NRVILE-NAIVRAAAVSALAKFGAQDVVLL-----PSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhhh-hhhhHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 322111 34688889999999986555322 2234556677888899999999999988863
No 151
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=1 Score=53.04 Aligned_cols=102 Identities=19% Similarity=0.311 Sum_probs=66.3
Q ss_pred ChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcC-CChhHHHHHHHHHHhccCCCCHHHH
Q 001796 724 RLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKS-GTMEAKENALSALFRFTDPTNLEAQ 802 (1012)
Q Consensus 724 ~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~ 802 (1012)
++..|-++|.+. ..+++.-|...++.|+..... ..++..+ ...++..|+. .+..+++.|+..|..+|... +.
T Consensus 330 ~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~---Na 402 (938)
T KOG1077|consen 330 AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NA 402 (938)
T ss_pred HHHHHHHHhhcc-cccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh---hH
Confidence 344444555444 445666677777777665332 3344333 7788888884 47789999999999999853 23
Q ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 803 RNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 803 ~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
+. ++.-+.+.|.+.+..+|+.-+-=.+-|+
T Consensus 403 k~-----IV~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 403 KQ-----IVAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HH-----HHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 33 3455777777788878777655555554
No 152
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.22 E-value=0.0025 Score=69.61 Aligned_cols=51 Identities=29% Similarity=0.443 Sum_probs=46.5
Q ss_pred eecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCcc
Q 001796 262 FKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRS 313 (1012)
Q Consensus 262 ~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 313 (1012)
+.|-|++++=++||+- -|||-|||+-|++++.+ +.+||.|+++|+..+++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 5799999999999998 78999999999999987 778999999999877765
No 153
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.21 E-value=0.0087 Score=47.55 Aligned_cols=55 Identities=27% Similarity=0.241 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 780 MEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 780 ~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
+.+|+.|+++|.+++... ++.... ....++|.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~-~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGC-PELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTT-HHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhccc-HHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988763 333232 4556899999999999999999999999875
No 154
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.20 E-value=0.023 Score=60.30 Aligned_cols=183 Identities=21% Similarity=0.148 Sum_probs=107.7
Q ss_pred cCCChhhHHHHHHHHHHhccCc-hHHHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCC
Q 001796 647 FNSSYNVRKPALRALFRICKSE-AELVKIAVVKA--NGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPK 723 (1012)
Q Consensus 647 ~~~~~~~~~~al~aL~~L~~~~-~~~~~~~i~~~--g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~ 723 (1012)
.+.+.+.+..++.-|..+.... .......+.+. ..+..+...+.+....+...|+.++..++...+...... -..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--ADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHH
Confidence 3345667888888888887644 11011111111 344566667777777888999988888876544443222 245
Q ss_pred ChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhcc-HHHHHHHhcCCChhHHHHHHHHHHhccCCCC---H
Q 001796 724 RLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDG-LNAIINILKSGTMEAKENALSALFRFTDPTN---L 799 (1012)
Q Consensus 724 ~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~---~ 799 (1012)
.+|.|++.+.++ ..-++..|..+|..+.....- .. .. .+.+...+.+.++.+|..++..|..+..... .
T Consensus 95 ~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~-~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 LLPPLLKKLGDS-KKFIREAANNALDAIIESCSY-SP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCc-HH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 678888888776 456777777777777664331 11 12 4556667788899999999999888765532 2
Q ss_pred HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 800 EAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 800 ~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
.......-..+++.+...+.+++++||..|-.++..+..
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 222211123478999999999999999999999998843
No 155
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.13 E-value=0.42 Score=49.92 Aligned_cols=202 Identities=18% Similarity=0.165 Sum_probs=130.7
Q ss_pred chhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 001796 632 ELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHE 711 (1012)
Q Consensus 632 ~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~ 711 (1012)
..+.+++.|+..+...+..+-++-.|..+|.++. .++ .++.+-++.+++...+++.|..++..+-..+
T Consensus 64 ~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~~-----------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 64 QDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DPE-----------SLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred ccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-chh-----------hHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 3477899999999888877777888888887775 222 2244445556667777777766666553211
Q ss_pred Ccch----HHhh-------hcCCChHHHHHhh-cCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCC
Q 001796 712 PEGV----VEYL-------LKPKRLEALVGFL-ENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGT 779 (1012)
Q Consensus 712 ~~~~----~~~l-------~~~~~i~~Lv~lL-~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~ 779 (1012)
.-.. .... ...+-+..|-..| ....+.-.+..|+-.|+|+.. +. +|..|++-+..++
T Consensus 132 ~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-Ee----------aI~al~~~l~~~S 200 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-EE----------AINALIDGLADDS 200 (289)
T ss_pred ccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-HH----------HHHHHHHhcccch
Confidence 0000 0000 0112234443333 222233344457777777654 22 3667777777777
Q ss_pred hhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCC
Q 001796 780 MEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG--SITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRP 857 (1012)
Q Consensus 780 ~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~ 857 (1012)
.-.|..++-+|..|-.+ -.||.|.+.|.+. ++.+|..|+.||+.++.
T Consensus 201 alfrhEvAfVfGQl~s~------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------------- 249 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQSP------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------------- 249 (289)
T ss_pred HHHHHHHHHHHhhccch------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-------------------
Confidence 77888899998888543 2689999888764 68899999999998732
Q ss_pred CCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHh
Q 001796 858 SRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLV 910 (1012)
Q Consensus 858 ~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~ 910 (1012)
..++..|.+.+.++..-|.+.|..||.-+-
T Consensus 250 -----------------------e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 250 -----------------------EDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred -----------------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 457788999999877767777777776554
No 156
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.05 E-value=0.0065 Score=51.83 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=38.5
Q ss_pred ceecccccccCCC-ceec-CCCccccHHHHHHHHhc--CCCCCCCCCcccC
Q 001796 261 AFKCRITGTVMMD-PVSL-YTGTTCERAAIEAWLDR--REKTDPETGVVLE 307 (1012)
Q Consensus 261 ~~~cpi~~~~m~d-Pv~~-~~g~t~~r~~i~~~~~~--~~~~cp~~~~~l~ 307 (1012)
+-.||.|...=.| |++. .|||.|-..||.+|++. +..+||.||++..
T Consensus 32 dg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 32 DGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 4567777777667 7766 99999999999999985 3568999999764
No 157
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.00 E-value=0.072 Score=64.67 Aligned_cols=224 Identities=14% Similarity=0.095 Sum_probs=149.2
Q ss_pred HHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC
Q 001796 742 MAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG 821 (1012)
Q Consensus 742 ~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 821 (1012)
..|+..|+.+-.-.+--...-+.-|+.|..++||++...+.|--.+-+-..+-.- ++..|..+++.++...+++.|.++
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhccCceeEEEEecCc
Confidence 3455555554433333233445679999999999999988888777776666555 366678888888888888888773
Q ss_pred ---CHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHH
Q 001796 822 ---SITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHAT 898 (1012)
Q Consensus 822 ---~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v 898 (1012)
+++-|..||-.|+.+..+ .+.|. ....+.+.+..=...|.+.....
T Consensus 567 ~~~~~EqrtmaAFVLAviv~n-------------------------f~lGQ------~acl~~~li~iCle~lnd~~~pL 615 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRN-------------------------FKLGQ------KACLNGNLIGICLEHLNDDPEPL 615 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcc-------------------------cchhH------HHhccccHHHHHHHHhcCCccHH
Confidence 457888889999988432 11111 22234566665556666543344
Q ss_pred HHH-HHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch-----Hh---hH-hhhc----
Q 001796 899 AYE-AIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS-----KE---MV-DTYG---- 964 (1012)
Q Consensus 899 ~~~-Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~-----~~---~~-~~~~---- 964 (1012)
... ++-.|+.|=.| .++++-.=.+.++.+.|..++.++-+++|..|+.||..+... ++ .. ..+.
T Consensus 616 LrQW~~icLG~LW~d--~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~ 693 (1387)
T KOG1517|consen 616 LRQWLCICLGRLWED--YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDE 693 (1387)
T ss_pred HHHHHHHHHHHHhhh--cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhh
Confidence 444 78888888876 556665556778899999999999999999999999999884 21 11 1111
Q ss_pred --ccccc---hhhhhhhhcccCCchHHHHHHHHHHHHHhc
Q 001796 965 --SSARL---LLVPLTSRNVHEDGSLERKAAKVLSLIERY 999 (1012)
Q Consensus 965 --~~~~~---~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~ 999 (1012)
....+ .++.++.....|++-+|+..+-+|.+.-.-
T Consensus 694 ~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 694 RTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred hhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 00000 112344444489999999999999876543
No 158
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.95 E-value=0.023 Score=60.34 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=107.8
Q ss_pred cCCCchHHHHHHHHHHhccCCCC--HHHHHHHHh--hccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHc
Q 001796 733 ENDAKHDVQMAAAGLLANLPKSE--LSLTMKLIE--LDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVER 808 (1012)
Q Consensus 733 ~~~~~~~~~~~Aa~aL~nL~~~~--~~~~~~l~~--~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~ 808 (1012)
.++.+.+.+..|+.-|..+..+. ......+.+ ...+..+...+.+....+...|+.++..++..-...... . -.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~-~-~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP-Y-AD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH-H-HH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH-H-HH
Confidence 34456777777777777765544 222222221 145566666666666778888988888887542222221 1 23
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCc-chHH
Q 001796 809 GVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANA-LPHL 887 (1012)
Q Consensus 809 g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~ga-i~~L 887 (1012)
..+|.|+..+.+++..++..|..+|..+..+ |.. .... ++.+
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-----------------------~~~--------------~~~~~~~~l 136 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIES-----------------------CSY--------------SPKILLEIL 136 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTT-----------------------S-H----------------HHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHH-----------------------CCc--------------HHHHHHHHH
Confidence 4789999999999899999999999998321 100 0223 4556
Q ss_pred HHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhc----CCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 888 VKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQE----EAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 888 v~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~----~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
.....+.++.++..++..|..+... ++.....+... ..++.+...+.++++++|+.|..++..+..+
T Consensus 137 ~~~~~~Kn~~vR~~~~~~l~~~l~~--~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 137 SQGLKSKNPQVREECAEWLAIILEK--WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHTT-S-HHHHHHHHHHHHHHHTT-------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHH--ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999988864 33122333222 2456777788899999999999999999765
No 159
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.91 E-value=0.0088 Score=66.52 Aligned_cols=50 Identities=14% Similarity=0.162 Sum_probs=43.7
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHHHhc----CCCCCCCCCcccCCC
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR----REKTDPETGVVLEDT 309 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~----~~~~cp~~~~~l~~~ 309 (1012)
.+..|.+|.++-.||+..+|.|+|||-||.+|... .+-+||.|..+|+-.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 57899999999999999999999999999998763 346999998888654
No 160
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.80 E-value=0.26 Score=59.73 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=113.7
Q ss_pred hcCCCHHHHHHHH-HHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhcc
Q 001796 689 LDDTDSEVREIAI-NLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDG 767 (1012)
Q Consensus 689 l~~~~~~v~~~a~-~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~ 767 (1012)
+.+.+...+..|+ ++++.++.+ +.... ..+.+++... ..+.+++.-.=--|.+.+...++ .++. +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G--~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~--~~lL---a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG--EDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPE--LALL---A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC--CChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHH--HHHH---H
Confidence 3444555555555 366666654 22222 2344455444 33556665555556666666663 2222 3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCC
Q 001796 768 LNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMP 847 (1012)
Q Consensus 768 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~ 847 (1012)
+..+.+=+++.++.+|..|++++..+-. +++- ..+++++.+++.++++.||+.|+-|+.++=.
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~---~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--------- 156 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRV---KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--------- 156 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCh---HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh---------
Confidence 6666677888899999999999998844 3332 2378999999999999999999999999821
Q ss_pred CCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhh
Q 001796 848 ESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQ 911 (1012)
Q Consensus 848 ~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~ 911 (1012)
.+. ....+.|.+..+..++.+.++.|+..|+.+|..+-.
T Consensus 157 -------------------ld~------~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 157 -------------------LDK------DLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred -------------------cCH------hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 111 223457889999999999999999999999988764
No 161
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.79 E-value=2.4 Score=49.38 Aligned_cols=361 Identities=17% Similarity=0.135 Sum_probs=184.0
Q ss_pred hHHHHhhhcCCCh---hHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccce
Q 001796 547 IPPLLGLVGSGNF---QSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFL 623 (1012)
Q Consensus 547 i~~Lv~lL~~~~~---~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~ 623 (1012)
+|.|...|.+.++ .-.+..+.+|..+|..+.--..+.. +.+..+-....... ........+.+|.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~-~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSES-SSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHhccccc
Confidence 4778888876554 5678899999999998776554443 33344444443333 33233444444454443211111
Q ss_pred ecccCCccchhHHHHHHHHHHhccCCC-----hhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhc--------
Q 001796 624 VDEKGNRLELEPIVTNLLTLQQNFNSS-----YNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLD-------- 690 (1012)
Q Consensus 624 ~~~~g~~l~~~~~v~~Ll~ll~~~~~~-----~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-------- 690 (1012)
............+++.++.+.-..... +.+-..+..++..+..+-+..-.+.+ +..+..+..
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~ 153 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPF 153 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCC
Confidence 001111111223677777766543211 22333344444444443221112222 223333222
Q ss_pred --CC------CHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCC--CHHHHH
Q 001796 691 --DT------DSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKS--ELSLTM 760 (1012)
Q Consensus 691 --~~------~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~--~~~~~~ 760 (1012)
.. ......-..+++..+.....-. .....+..++.+..+..+...+..++.+++.|..- +.+.-.
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~-----~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~ 228 (415)
T PF12460_consen 154 QPSSSTISEQQSRLVILFSAILCSLRKDVSLP-----DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD 228 (415)
T ss_pred CccccccccccccHHHHHHHHHHcCCcccCcc-----CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH
Confidence 01 1112222234444443331100 01135667777766665566666666666655432 111011
Q ss_pred HHHhhccHHHHHHHh-cCCChhHHHHHHHHHHhcc----CCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001796 761 KLIELDGLNAIINIL-KSGTMEAKENALSALFRFT----DPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGT 835 (1012)
Q Consensus 761 ~l~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls----~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~n 835 (1012)
..+..+..-+ .......+..+..++..++ ...++.. ...+..|+.++.+ +.+...|+.++.-
T Consensus 229 -----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~------~~~~~~L~~lL~~--~~~g~~aA~~f~i 295 (415)
T PF12460_consen 229 -----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA------TELLDKLLELLSS--PELGQQAAKAFGI 295 (415)
T ss_pred -----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH------HHHHHHHHHHhCC--hhhHHHHHHHHhh
Confidence 1223333323 2223334444444444333 2223331 1246778888876 7788899999998
Q ss_pred hccCCcCCccCCCCCcccccCCCCCccccccCCccCCC--cchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhcc
Q 001796 836 LSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSES--TSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEG 913 (1012)
Q Consensus 836 Ls~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~--~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~ 913 (1012)
+-...+... ...+.|.++ .+.++. ...+|.|++-.+..+...+..-+.||.++...
T Consensus 296 l~~d~~~~l--------------------~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~- 353 (415)
T PF12460_consen 296 LLSDSDDVL--------------------NKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKN- 353 (415)
T ss_pred HhcCcHHhc--------------------CccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh-
Confidence 865522110 001111111 011111 45688888888877777888899999999985
Q ss_pred chhhhhHHhhhc-CCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 914 CQQRGVNVLHQE-EAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 914 ~~~~~~~~i~~~-~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
.|... .+.+. .-+|.+++-+..++++++..+..+|..+...
T Consensus 354 -vP~~v-l~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 354 -VPKSV-LLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred -CCHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 33222 12222 2478888888888999999999999998875
No 162
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.75 E-value=0.034 Score=44.10 Aligned_cols=54 Identities=26% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhc
Q 001796 739 DVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRF 793 (1012)
Q Consensus 739 ~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 793 (1012)
.++..|+++|++++...++.... ....+++.|..+|+++++.+|.+|+++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 57889999999998877764443 5567899999999999999999999999875
No 163
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.74 E-value=0.032 Score=50.09 Aligned_cols=67 Identities=21% Similarity=0.176 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHh--cCCChhHHHHHHHHHHhccCCCCHHHHHHHHHc
Q 001796 741 QMAAAGLLANLPKSELSLTMKLIELDGLNAIINIL--KSGTMEAKENALSALFRFTDPTNLEAQRNVVER 808 (1012)
Q Consensus 741 ~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL--~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~ 808 (1012)
+...+.+|+||+..++..+..+.+.|++|.++... ...+|-++|.|+.++.+|+.. ++++|..+.+-
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~-n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEG-NPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhC-CHHHHHHHHhc
Confidence 34567789999999999999999999999999974 345889999999999999997 78888876653
No 164
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=0.78 Score=53.92 Aligned_cols=106 Identities=13% Similarity=0.195 Sum_probs=72.4
Q ss_pred cCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc-cCChhhHhHHHHHHHHHhchHhh
Q 001796 881 ANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT-WGTDSLKEEALGFLEKVFMSKEM 959 (1012)
Q Consensus 881 ~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~-s~~~~~~~~a~~aL~~l~~~~~~ 959 (1012)
..++..|.++|.+...+++--|+..++.|++. ....+.+... ...++..|+ ..+..+|++|+..|..+|..+..
T Consensus 328 ~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Na 402 (938)
T KOG1077|consen 328 SRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA 402 (938)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhH
Confidence 34566777778777788888888888888873 3334444443 566777777 77888999999999998865442
Q ss_pred HhhhcccccchhhhhhhhcccCCchHHHHHHHHHHHHHhc
Q 001796 960 VDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERY 999 (1012)
Q Consensus 960 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~ 999 (1012)
.+ ..-+|+|++.+.+..+|+.-..=.+.|..-
T Consensus 403 k~--------IV~elLqYL~tAd~sireeivlKvAILaEK 434 (938)
T KOG1077|consen 403 KQ--------IVAELLQYLETADYSIREEIVLKVAILAEK 434 (938)
T ss_pred HH--------HHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 22 234677777778877776555444455443
No 165
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=95.57 E-value=0.18 Score=49.04 Aligned_cols=125 Identities=12% Similarity=0.210 Sum_probs=98.7
Q ss_pred HHHHhcCcHHHHHHhhcCCC------HHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCC-chHHHHHHHH
Q 001796 674 IAVVKANGVSLILSLLDDTD------SEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDA-KHDVQMAAAG 746 (1012)
Q Consensus 674 ~~i~~~g~v~~Lv~ll~~~~------~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~~~~~~Aa~ 746 (1012)
..++..||+..|+.+++++. .++...++.++..|-.++ --..+ .....+|...+..+.... +..+...|.+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 45678899999999998865 367777888888887763 22223 345677888888886554 6889999999
Q ss_pred HHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHH
Q 001796 747 LLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLE 800 (1012)
Q Consensus 747 aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~ 800 (1012)
+|-++..+++.....+.++=-++.|+..|+.++++++.+|...+-.|-...++.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 999999988887788888889999999999999999999998888776543333
No 166
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=3.7 Score=51.06 Aligned_cols=356 Identities=14% Similarity=0.082 Sum_probs=189.3
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCC-hHHHHHHHHHHHhcccccchhhH
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGA-ESSRILMMKALLSMELVDSNLEL 540 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~aL~~Ls~~~~~~~~ 540 (1012)
++++.|...|++.|..++..|++.+..+++..+. . ....+|...++++...+ +..=..++.+|..|+...=-...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---E-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH---H-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 6788888888999999999999999999876652 2 22345666777665444 33444666777777662110000
Q ss_pred hhhcCChHHHHhhhcCCC--------hhHHHHHHHHHHHhcCCCchH--HHHHHcCChHHHHHHhhcCCCChhHHHHHHH
Q 001796 541 LGKEGIIPPLLGLVGSGN--------FQSKELSLSVLVKLSGCSKNR--ELISAAGGIPQVLELMFSSHVPSNIIVKCSE 610 (1012)
Q Consensus 541 i~~~g~i~~Lv~lL~~~~--------~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~ 610 (1012)
. =..++|.+++.|.-++ ..++..|+-+++.++...+.. +.+...=+-..|+..+.+.. ...+..|.+
T Consensus 417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDre--vncRRAAsA 493 (1133)
T KOG1943|consen 417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDRE--VNCRRAASA 493 (1133)
T ss_pred H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCch--hhHhHHHHH
Confidence 0 0234566766664322 358888888888888643222 11211111112222333322 224466666
Q ss_pred HHHHhhc-cCc-----cce--ecccC-----C--------ccchhHHHHHHHHHHhcc---CCChhhHHHHHHHHHHhcc
Q 001796 611 ILEKLSS-DGI-----KFL--VDEKG-----N--------RLELEPIVTNLLTLQQNF---NSSYNVRKPALRALFRICK 666 (1012)
Q Consensus 611 ~L~nLa~-~~~-----~~~--~~~~g-----~--------~l~~~~~v~~Ll~ll~~~---~~~~~~~~~al~aL~~L~~ 666 (1012)
++....+ .+. ..+ ++... + .....+...++++-+-.. ..+..+++.+..+|..|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 6665554 221 110 01000 0 000122233333322221 2346789999999999876
Q ss_pred CchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccC----CC--cchHHhhhcCC---ChHHHHH-hhcCCC
Q 001796 667 SEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHH----EP--EGVVEYLLKPK---RLEALVG-FLENDA 736 (1012)
Q Consensus 667 ~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~----~~--~~~~~~l~~~~---~i~~Lv~-lL~~~~ 736 (1012)
..+. ....+.++.+++.....+..++.-+..+.+.+... .+ ....+.-+ ++ .++++.. .+..+.
T Consensus 574 ~~pk-----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i-~~l~~ii~~~~~~~~~rg~ 647 (1133)
T KOG1943|consen 574 TEPK-----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRI-AGLLSIIPPICDRYFYRGQ 647 (1133)
T ss_pred hhHH-----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHh-hhhhhhccHHHHHHhccch
Confidence 5432 23456678888888777877776655444433211 10 00000000 11 2333322 233332
Q ss_pred chHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCC---CCHHHHHHHHHcCCHHH
Q 001796 737 KHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDP---TNLEAQRNVVERGVYPL 813 (1012)
Q Consensus 737 ~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~---~~~~~~~~i~~~g~i~~ 813 (1012)
..-.+...+..+.+++.+.....+..+-.+.-..+.+.+...+ .+|..|.+++..++.. .++.. +...|..
T Consensus 648 ~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~-----~~~li~~ 721 (1133)
T KOG1943|consen 648 GTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGE-----EAPLITR 721 (1133)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchh-----hhHHHHH
Confidence 3345556778888888877766666666666666666664445 7888899998888753 01110 0012233
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhh
Q 001796 814 LVNLLQIG-SITAKARAAALIGTL 836 (1012)
Q Consensus 814 Lv~lL~s~-~~~vk~~Aa~aL~nL 836 (1012)
.+.-+.+. +..++.--..++.++
T Consensus 722 ~ls~~~~~~~~~~r~g~~lal~~l 745 (1133)
T KOG1943|consen 722 YLSRLTKCSEERIRRGLILALGVL 745 (1133)
T ss_pred HHHHhcCchHHHHHHHHHHHHccC
Confidence 33333333 455666666677665
No 167
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.005 Score=64.24 Aligned_cols=46 Identities=15% Similarity=0.089 Sum_probs=40.6
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
-|.|-||.+.+++||+..|||+||..|--+.+.. +..|++|++...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence 5889999999999999999999999998777765 568999988653
No 168
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=6 Score=49.32 Aligned_cols=235 Identities=17% Similarity=0.124 Sum_probs=139.4
Q ss_pred cCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccce
Q 001796 544 EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFL 623 (1012)
Q Consensus 544 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~ 623 (1012)
++++..|...|++.|..++-.|++-+..+..... ..+ ...+|...++++....++..+ ..++-+|+.|+..|.--.
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aW-HgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAW-HGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHH-HHHHHHHHHHHhcCCcch
Confidence 5778899999999999999999999999987544 112 223466677766655544444 688888999986431100
Q ss_pred ecccCCccchhHHHHHHHHHHhc------cCCChhhHHHHHHHHHHhccC-chHHHHHHHHhcCcHHHHHHhhcCCCHHH
Q 001796 624 VDEKGNRLELEPIVTNLLTLQQN------FNSSYNVRKPALRALFRICKS-EAELVKIAVVKANGVSLILSLLDDTDSEV 696 (1012)
Q Consensus 624 ~~~~g~~l~~~~~v~~Ll~ll~~------~~~~~~~~~~al~aL~~L~~~-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v 696 (1012)
-..+.+++-++.-+.- ...+..+|..|+.+.|.++.. +++.++. +.+.=.-..|...+-+..-..
T Consensus 416 -------s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 416 -------SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNC 487 (1133)
T ss_pred -------HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhH
Confidence 0013445544433322 112345899999999999874 3332222 222111112333445666778
Q ss_pred HHHHHHHHHHh-ccCCC--cchH--H-------------------hhhc-CCChHHHHHhh-cC---CCchHHHHHHHHH
Q 001796 697 REIAINLLFLF-SHHEP--EGVV--E-------------------YLLK-PKRLEALVGFL-EN---DAKHDVQMAAAGL 747 (1012)
Q Consensus 697 ~~~a~~~L~~l-s~~~~--~~~~--~-------------------~l~~-~~~i~~Lv~lL-~~---~~~~~~~~~Aa~a 747 (1012)
|.+|.+++.-. ..... .+.. . .+.+ .+...++++-| .+ .=+..+++.|+.+
T Consensus 488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~a 567 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYA 567 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 88888777643 32111 1110 0 0001 24445555433 22 1256788999999
Q ss_pred HhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhcc
Q 001796 748 LANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFT 794 (1012)
Q Consensus 748 L~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 794 (1012)
|.+|+...++ ....+.+|+|+....+++...+..+.-+...++
T Consensus 568 L~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 568 LHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred HHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 9999886665 445677899988877787777666554444443
No 169
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.39 E-value=0.14 Score=61.17 Aligned_cols=244 Identities=17% Similarity=0.147 Sum_probs=152.4
Q ss_pred ccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHH-HhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHH
Q 001796 534 VDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLV-KLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEIL 612 (1012)
Q Consensus 534 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L 612 (1012)
...-+...++.|+...|..+.....+..+-.+..+|. .++.. ..+ ....++++...+.... .
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~----~~~v~~~~~s~~~~d~-------~----- 555 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER----SYEVVKPLDSALHNDE-------K----- 555 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc----hhhhhhhhcchhhhhH-------H-----
Confidence 4556777888999999999887777777777777776 11111 111 0011222222221110 0
Q ss_pred HHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCC
Q 001796 613 EKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDT 692 (1012)
Q Consensus 613 ~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~ 692 (1012)
. --...++.+|.||+..++. .++.+.+.-+++.+-.++...
T Consensus 556 ------------------------------~--------~en~E~L~altnLas~s~s-~r~~i~ke~~~~~ie~~~~ee 596 (748)
T KOG4151|consen 556 ------------------------------G--------LENFEALEALTNLASISES-DRQKILKEKALGKIEELMTEE 596 (748)
T ss_pred ------------------------------H--------HHHHHHHHHhhcccCcchh-hHHHHHHHhcchhhHHHhhcc
Confidence 0 0235567777788776655 467788887777777778888
Q ss_pred CHHHHHHHHHHHHHhccCCCcchHHhhhc-CCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHH-HHHhhccHHH
Q 001796 693 DSEVREIAINLLFLFSHHEPEGVVEYLLK-PKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTM-KLIELDGLNA 770 (1012)
Q Consensus 693 ~~~v~~~a~~~L~~ls~~~~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~-~l~~~g~i~~ 770 (1012)
++..|..++..+.||..+ +.-....+++ ...++.....+.. .+.....++++++..+...+.+++. ..--..+...
T Consensus 597 ~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~ 674 (748)
T KOG4151|consen 597 NPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEI 674 (748)
T ss_pred cHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHH
Confidence 999999999999998765 3333333444 2334444334433 3556667777777766665665555 3334567788
Q ss_pred HHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 771 IINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 771 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
++.++.+++..++...+...+|+... ..+....+.....++.+..+=.-.-...++.++.+|...
T Consensus 675 ~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 675 LVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLSAA 739 (748)
T ss_pred HHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 88899999999999999888886443 466666666666676666554433344566666666543
No 170
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.34 E-value=0.17 Score=60.41 Aligned_cols=202 Identities=18% Similarity=0.165 Sum_probs=143.0
Q ss_pred HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH-HhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhc
Q 001796 672 VKIAVVKANGVSLILSLLDDTDSEVREIAINLLF-LFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLAN 750 (1012)
Q Consensus 672 ~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~-~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~n 750 (1012)
.+...++.||...|+.+.....+..+.....+|. .++.. ++. ....++++.+.+.+.........++.++.|
T Consensus 496 ~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~------~~~v~~~~~s~~~~d~~~~en~E~L~altn 568 (748)
T KOG4151|consen 496 ERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GER------SYEVVKPLDSALHNDEKGLENFEALEALTN 568 (748)
T ss_pred hcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCc------hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence 3466778899999999987777777777666666 33322 111 135566666666554333344568999999
Q ss_pred cCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHH
Q 001796 751 LPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVE-RGVYPLLVNLLQIGSITAKARA 829 (1012)
Q Consensus 751 L~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~-~g~i~~Lv~lL~s~~~~vk~~A 829 (1012)
|+..+...++.+.+.-+++.+-+++...++..++.++..+.||..+. .-+.+.+.+ ....|.....+.........++
T Consensus 569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~-~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSP-LLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhH-HHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 99998888888999988999888888889999999999999998862 233344444 4567888778777777778888
Q ss_pred HHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHH
Q 001796 830 AALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTL 909 (1012)
Q Consensus 830 a~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L 909 (1012)
+.++..++..+. +.|+ ....-......++.++.+++.+++...+...+++
T Consensus 648 a~a~a~I~sv~~--------------------------n~c~----~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~ 697 (748)
T KOG4151|consen 648 AGALAAITSVVE--------------------------NHCS----RILELLEWLEILVRAIQDEDDEIQHRGLVIILNL 697 (748)
T ss_pred cccccchhhcch--------------------------hhhh----hHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhH
Confidence 888886643222 2221 0111235566788899999999999988888885
Q ss_pred hh
Q 001796 910 VQ 911 (1012)
Q Consensus 910 ~~ 911 (1012)
..
T Consensus 698 ~~ 699 (748)
T KOG4151|consen 698 FE 699 (748)
T ss_pred HH
Confidence 54
No 171
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=95.33 E-value=0.015 Score=59.92 Aligned_cols=46 Identities=20% Similarity=0.166 Sum_probs=39.8
Q ss_pred CceecccccccCCCceec-CCCccccHHHHHHHHhc-CCCCCCCCCcc
Q 001796 260 NAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDR-REKTDPETGVV 305 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~-~~~~cp~~~~~ 305 (1012)
-+++|||+..+...||+- .|||-|+|.+|+..... ....||+-|..
T Consensus 175 fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 489999999999999998 99999999999998864 24579997665
No 172
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.27 E-value=0.014 Score=62.94 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=43.2
Q ss_pred CCceecccccccCCC---ceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCcc
Q 001796 259 LNAFKCRITGTVMMD---PVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRS 313 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~d---Pv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 313 (1012)
...|.||||+..|.. -|.+ +|||.|...+|++-- ....||.|+.++...+++|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 468999999999954 3444 999999999999873 3557999999998777653
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.18 E-value=0.49 Score=57.87 Aligned_cols=241 Identities=16% Similarity=0.110 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhccCch-HH-HHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-hccCCCcchHHhhhcCCChHHHHH
Q 001796 654 RKPALRALFRICKSEA-EL-VKIAVVKANGVSLILSLLDDTDSEVREIAINLLFL-FSHHEPEGVVEYLLKPKRLEALVG 730 (1012)
Q Consensus 654 ~~~al~aL~~L~~~~~-~~-~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~l~~~~~i~~Lv~ 730 (1012)
|.+-++||.-|+.+=+ +. ....-..-|..|-++++|+++..+++.--+-+... |+-+ +. ....+++.++-...+.
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD-~S-CQ~dLvKe~g~~YF~~ 561 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD-PS-CQADLVKENGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC-ch-hHHHHHhccCceeEEE
Confidence 3455566665655311 11 23444567999999999999988888777665555 4444 33 3344566766667777
Q ss_pred hhcCCC--chHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHHhccCCCCHHHHHHHHH
Q 001796 731 FLENDA--KHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-TMEAKENALSALFRFTDPTNLEAQRNVVE 807 (1012)
Q Consensus 731 lL~~~~--~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~ 807 (1012)
.|..+. +++.+..|+-+|+.++.+-.-.+....+.+.+..-.+.|.++ .+-.+.=++-.|..|=.. ..+.|-.-..
T Consensus 562 vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d-~~~Arw~G~r 640 (1387)
T KOG1517|consen 562 VLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED-YDEARWSGRR 640 (1387)
T ss_pred EecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh-cchhhhcccc
Confidence 776522 346777799999999988777777888888888888888886 456677777777777554 3555666677
Q ss_pred cCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcc---
Q 001796 808 RGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANAL--- 884 (1012)
Q Consensus 808 ~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai--- 884 (1012)
.++...|+.+|.+..++||.+|..||+.|-.+...- |. .+...+ +.-. ..+.....+|.-..
T Consensus 641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~-----------fd-e~~~~~--~~~~-~l~~~~~~~E~~i~~~~ 705 (1387)
T KOG1517|consen 641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDN-----------FD-EQTLVV--EEEI-DLDDERTSIEDLIIKGL 705 (1387)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccc-----------cc-hhhhhh--hhhh-cchhhhhhHHHHHHhhH
Confidence 889999999999999999999999999985432110 00 000000 0000 00000011222222
Q ss_pred hHHHHhccCCChHHHHHHHHHHHHHhhc
Q 001796 885 PHLVKLLQGRVHATAYEAIQTLSTLVQE 912 (1012)
Q Consensus 885 ~~Lv~lL~~~~~~v~~~Al~aL~~L~~~ 912 (1012)
-+|+.++.++.+-+..+.+.+|..++..
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 3788888888888888888888877754
No 174
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.10 E-value=1.4 Score=55.01 Aligned_cols=151 Identities=15% Similarity=0.213 Sum_probs=104.1
Q ss_pred CHHHHHHHHhc----CCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcch
Q 001796 810 VYPLLVNLLQI----GSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALP 885 (1012)
Q Consensus 810 ~i~~Lv~lL~s----~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~ 885 (1012)
..|.++.+.+. ++|.++.+|.-||+.| +.+.. .|| ....+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~kl--------------------------M~iSa-------~fc---es~l~ 963 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKL--------------------------MCISA-------EFC---ESHLP 963 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHH--------------------------hhhhH-------HHH---HHHHH
Confidence 68888899853 4799999999999998 32322 244 56778
Q ss_pred HHHHhcc-CCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhchHhhHhhhc
Q 001796 886 HLVKLLQ-GRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYG 964 (1012)
Q Consensus 886 ~Lv~lL~-~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~~~~~~~ 964 (1012)
.|...+. ++++.++..++.+++-|+-- .+...+... +.|-+-+++.++.+|+.|.-+|.++...+-++.+ |
T Consensus 964 llftimeksp~p~IRsN~VvalgDlav~--fpnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK-G 1035 (1251)
T KOG0414|consen 964 LLFTIMEKSPSPRIRSNLVVALGDLAVR--FPNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK-G 1035 (1251)
T ss_pred HHHHHHhcCCCceeeecchheccchhhh--cccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc-c
Confidence 8888887 67777888888888888753 343333333 3566667888999999999999998866554443 2
Q ss_pred ccccchhhhhhhhcccCCchHHHHHHHHHHHHHhccCCccc-ccCCC
Q 001796 965 SSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYSRSSTS-LIPGL 1010 (1012)
Q Consensus 965 ~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~~~~~~~-~~~~~ 1010 (1012)
..+.| +--+.+++++++..|..-.+.|++-. +..| +.|-+
T Consensus 1036 ql~eM-----A~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdi 1076 (1251)
T KOG0414|consen 1036 QLSEM-----ALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDI 1076 (1251)
T ss_pred cHHHH-----HHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHH
Confidence 22222 11222688899999998888887765 4555 54433
No 175
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=5.9 Score=51.07 Aligned_cols=393 Identities=13% Similarity=0.077 Sum_probs=187.5
Q ss_pred CC-hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCc
Q 001796 428 DP-SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWY 506 (1012)
Q Consensus 428 ~~-~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i 506 (1012)
|+ .....|..-+++....++.... ... -.....-|+.-|.+..+.+|+.++-+|..|-...+.....=.-....
T Consensus 1009 DP~~~Vq~aM~sIW~~Li~D~k~~v---d~y--~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw 1083 (1702)
T KOG0915|consen 1009 DPDKKVQDAMTSIWNALITDSKKVV---DEY--LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELW 1083 (1702)
T ss_pred CCcHHHHHHHHHHHHHhccChHHHH---HHH--HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 44 3446777888887776532111 111 12345556666677888999999999999875543221111111223
Q ss_pred HHHHHHHhcCChHHHH---HHHHHHHhccc---c--cchhhHhhhcCChHHHHh--hhcCCChhHHHHHHHHHHHhcCCC
Q 001796 507 KPLIDRIIQGAESSRI---LMMKALLSMEL---V--DSNLELLGKEGIIPPLLG--LVGSGNFQSKELSLSVLVKLSGCS 576 (1012)
Q Consensus 507 ~~Lv~lL~~~~~~~~~---~a~~aL~~Ls~---~--~~~~~~i~~~g~i~~Lv~--lL~~~~~~~~~~a~~~L~~Ls~~~ 576 (1012)
..+.+...+=.+.+|. .++.+|..++. + +..+..-+-..++|.|++ ++ +.-++++..++.++..|+.+.
T Consensus 1084 ~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kss 1162 (1702)
T KOG0915|consen 1084 EAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSS 1162 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhc
Confidence 3333333322233443 45556666655 2 222333333556777765 34 445789999999999998754
Q ss_pred chHHHHHHcCChHHHHHHhhcCCCChhHH-------HHHHHHHHHhhccCcc-----ceecccCCcc---chhHHHHHHH
Q 001796 577 KNRELISAAGGIPQVLELMFSSHVPSNII-------VKCSEILEKLSSDGIK-----FLVDEKGNRL---ELEPIVTNLL 641 (1012)
Q Consensus 577 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~-------~~a~~~L~nLa~~~~~-----~~~~~~g~~l---~~~~~v~~Ll 641 (1012)
...-+-.-...||.|+.....-.+.+ +- ....+++.++-..+.+ +.++..-..+ ..+..++.+.
T Consensus 1163 g~~lkP~~~~LIp~ll~~~s~lE~~v-LnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~ 1241 (1702)
T KOG0915|consen 1163 GKELKPHFPKLIPLLLNAYSELEPQV-LNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLT 1241 (1702)
T ss_pred hhhhcchhhHHHHHHHHHccccchHH-HHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33221122335566666555432211 10 1111222222110000 0000000001 1356777777
Q ss_pred HHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcC-cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhh
Q 001796 642 TLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKAN-GVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLL 720 (1012)
Q Consensus 642 ~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g-~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~ 720 (1012)
.+++.+-. ...+-.++..+.-|+..-+...+.. .| .+..++....+.++.++.....+...|.....++....
T Consensus 1242 el~R~sVg-l~Tkvg~A~fI~~L~~r~~~emtP~---sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK-- 1315 (1702)
T KOG0915|consen 1242 ELVRGSVG-LGTKVGCASFISLLVQRLGSEMTPY---SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK-- 1315 (1702)
T ss_pred HHHhccCC-CCcchhHHHHHHHHHHHhccccCcc---hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHH--
Confidence 77776421 1134444444444432110000000 11 14556677778888888888877777766544443322
Q ss_pred cCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHh--hccHHHHHHHhcCCCh-hHHHHHHHHHHhccCCC
Q 001796 721 KPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIE--LDGLNAIINILKSGTM-EAKENALSALFRFTDPT 797 (1012)
Q Consensus 721 ~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~--~g~i~~Lv~lL~~~~~-~~~~~a~~aL~~Ls~~~ 797 (1012)
.+..++..+-...+. ....+++++.|++.+..+ +++ +..+-+++-+-.+... +.++-=-.++..++..+
T Consensus 1316 ---Lie~~l~~~l~k~es-~~siscatis~Ian~s~e----~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsgg 1387 (1702)
T KOG0915|consen 1316 ---LIETLLADLLGKDES-LKSISCATISNIANYSQE----MLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGG 1387 (1702)
T ss_pred ---HHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHH----HHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCC
Confidence 244444433222122 225566667665553332 332 2234444444333221 11111112222333332
Q ss_pred CHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcC
Q 001796 798 NLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPK 842 (1012)
Q Consensus 798 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~ 842 (1012)
.... +.....-.++.....+++....++..++.++..++.....
T Consensus 1388 agtv-rl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1388 AGTV-RLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred cchh-hhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence 1111 1111222334444455555678999999999988665443
No 176
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.00 E-value=3 Score=49.74 Aligned_cols=219 Identities=15% Similarity=0.174 Sum_probs=111.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHH
Q 001796 682 VSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMK 761 (1012)
Q Consensus 682 v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~ 761 (1012)
+..+..+|.+.++.++-.|+..|..++.. |..... +...+++++...++-+++.-..--|..+...+..
T Consensus 245 i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~------Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~---- 313 (948)
T KOG1058|consen 245 IRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA------AASTYIDLLVKESDNNVKLIVLDRLSELKALHEK---- 313 (948)
T ss_pred HHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH------HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH----
Confidence 46667777777777777777777776655 322221 2344555553332323332222222222221111
Q ss_pred HHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCc
Q 001796 762 LIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSP 841 (1012)
Q Consensus 762 l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~ 841 (1012)
+ =.|.+--++++|.+++-++++++......|..+.+.+--..+.+..+...--. =++.+..-|..-..+++..+.
T Consensus 314 i-l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav--- 388 (948)
T KOG1058|consen 314 I-LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAV--- 388 (948)
T ss_pred H-HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhh---
Confidence 1 12445566777888888899999999888877644331111111111111000 001112234444455554321
Q ss_pred CCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHH
Q 001796 842 KFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNV 921 (1012)
Q Consensus 842 ~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~ 921 (1012)
. |-=+.+.+|+.|++.+.+.++......+.-+.....- .+.-+..
T Consensus 389 ------------------------~---------Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek--~p~Lr~~ 433 (948)
T KOG1058|consen 389 ------------------------K---------FPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEK--FPNLRAS 433 (948)
T ss_pred ------------------------c---------ChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh--CchHHHH
Confidence 1 2223578999999999987765433333332222221 2333333
Q ss_pred hhhcCCchHHHHHhc-cCChhhHhHHHHHHHHHhch
Q 001796 922 LHQEEAIKPTLEILT-WGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 922 i~~~~~v~~L~~ll~-s~~~~~~~~a~~aL~~l~~~ 956 (1012)
| +..++.-+. -.+..+-+.|+|++..+|..
T Consensus 434 i-----i~~l~~~~~~irS~ki~rgalwi~GeYce~ 464 (948)
T KOG1058|consen 434 I-----IEKLLETFPQIRSSKICRGALWILGEYCEG 464 (948)
T ss_pred H-----HHHHHHhhhhhcccccchhHHHHHHHHHhh
Confidence 3 333444222 34667778999999999876
No 177
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.014 Score=58.87 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=31.8
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHHHhc
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR 294 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~ 294 (1012)
+.=+|.+|++..+|||+.+.||-|||.||-+++..
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 34589999999999999999999999999999864
No 178
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.011 Score=70.85 Aligned_cols=46 Identities=24% Similarity=0.431 Sum_probs=41.9
Q ss_pred CceecccccccCCC-----ceecCCCccccHHHHHHHHhcCCCCCCCCCccc
Q 001796 260 NAFKCRITGTVMMD-----PVSLYTGTTCERAAIEAWLDRREKTDPETGVVL 306 (1012)
Q Consensus 260 ~~~~cpi~~~~m~d-----Pv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l 306 (1012)
.+-.|+||.|.|.. |-.++|||.|...|+++|++. ..+||.|+..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence 47899999999999 788899999999999999997 78999998844
No 179
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.86 E-value=1.1 Score=47.92 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=144.3
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhc--CChHHHHHHHHHHHhcccccchhhHhhh-cCC
Q 001796 470 LIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQ--GAESSRILMMKALLSMELVDSNLELLGK-EGI 546 (1012)
Q Consensus 470 lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~ 546 (1012)
++++-+.-.+..|+..|.++....+..+..-++.-.-..+++.++. |....+.+.+-+++-++.++.....|-+ ...
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dl 236 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344355577888889998875554455555666666778888875 4677888999999988887776644443 456
Q ss_pred hHHHHhhhcCCC-hhHHHHHHHHHHHhcC-CC-chHHHHHHcCChHHHHHHhhcC-CCChhHHHH---HHHHHH----Hh
Q 001796 547 IPPLLGLVGSGN-FQSKELSLSVLVKLSG-CS-KNRELISAAGGIPQVLELMFSS-HVPSNIIVK---CSEILE----KL 615 (1012)
Q Consensus 547 i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~-~~-~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~~---a~~~L~----nL 615 (1012)
|.-|+++.+..- ..+-..++.++.|++. .| ..-..+.-.|-+.+-|++|... -.+..+... .-.+|. .|
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l 316 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence 777777776543 4577889999999987 22 2334455566566666666554 333222111 111111 11
Q ss_pred hc---------cCcc-ceecccCCc----------cchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhcc-CchHHHHH
Q 001796 616 SS---------DGIK-FLVDEKGNR----------LELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICK-SEAELVKI 674 (1012)
Q Consensus 616 a~---------~~~~-~~~~~~g~~----------l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~-~~~~~~~~ 674 (1012)
+. .|+- +...+...- -..-.++..|.++++...++.-+ .-|+.=+..+.. .|+ .+.
T Consensus 317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i-~vAc~Di~~~Vr~~PE--~~~ 393 (432)
T COG5231 317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWI-CVACSDIFQLVRASPE--INA 393 (432)
T ss_pred hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceE-eeeHhhHHHHHHhCch--HHH
Confidence 11 0110 111111100 01234677888888886655323 233334444444 444 457
Q ss_pred HHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 001796 675 AVVKANGVSLILSLLDDTDSEVREIAINLLFLF 707 (1012)
Q Consensus 675 ~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~l 707 (1012)
.+.+.|+=+.+++++.+++++++-.|+.++..+
T Consensus 394 vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 394 VLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 778889999999999999999999999988764
No 180
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=13 Score=44.99 Aligned_cols=250 Identities=16% Similarity=0.226 Sum_probs=121.8
Q ss_pred hHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCC-------
Q 001796 725 LEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPT------- 797 (1012)
Q Consensus 725 i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~------- 797 (1012)
.+.+=..+++. ...+...|+.++.+|....... +.. ++..|--++.+.....|-.|.++|..++...
T Consensus 247 ~~fl~s~l~~K-~emV~~EaArai~~l~~~~~r~---l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 247 FPFLESCLRHK-SEMVIYEAARAIVSLPNTNSRE---LAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHhch-hHHHHHHHHHHHhhccccCHhh---cch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 34444455554 5678888999999998755431 111 5777777788888889999999999887431
Q ss_pred CHHHHHHHHHcC---CHHHHHHHHhcCCHH----HHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCc---------
Q 001796 798 NLEAQRNVVERG---VYPLLVNLLQIGSIT----AKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAH--------- 861 (1012)
Q Consensus 798 ~~~~~~~i~~~g---~i~~Lv~lL~s~~~~----vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~--------- 861 (1012)
+.++...+-+.+ ..+....+|..|+.. .....+.-..++|-.-.- ...+.-.-+|..-++-+
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKi--vvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKI--VVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceE--EeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 233333333322 245556677766543 233333333333211000 00000000121111000
Q ss_pred -cccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccc-hhhhhHHh-----------hhcCCc
Q 001796 862 -LCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGC-QQRGVNVL-----------HQEEAI 928 (1012)
Q Consensus 862 -~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~-~~~~~~~i-----------~~~~~v 928 (1012)
++ ..++ +.. ....+..++.... .++..++.++.-||..-.|-- ..-+.+.+ ....-+
T Consensus 399 ~Lr-~eGg-------~e~-K~aivd~Ii~iie-~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyi 468 (865)
T KOG1078|consen 399 MLR-EEGG-------FEF-KRAIVDAIIDIIE-ENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYI 468 (865)
T ss_pred HHH-hccC-------chH-HHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhh
Confidence 00 0111 000 0112333444443 344455556666665554411 11111111 111224
Q ss_pred hHHHHHhccCChhhHhHHHHHHHHHhchHhhHhhhcccccchhhhhhhh-cccCCchHHHHHHHHHHHHHhc
Q 001796 929 KPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSR-NVHEDGSLERKAAKVLSLIERY 999 (1012)
Q Consensus 929 ~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~~l~~L~~~-~~~~~~~~~~~Aa~~L~~L~~~ 999 (1012)
..+.+...=.+..+|..|..+|.++....+.... ...-++.+ ..+.|..+|..|..+|..+..-
T Consensus 469 r~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~-------sI~vllkRc~~D~DdevRdrAtf~l~~l~~~ 533 (865)
T KOG1078|consen 469 RFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP-------SILVLLKRCLNDSDDEVRDRATFYLKNLEEK 533 (865)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-------cHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence 4444443345667788888888877722111000 11112222 3367889999999999998843
No 181
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.76 E-value=0.015 Score=60.83 Aligned_cols=50 Identities=20% Similarity=0.124 Sum_probs=44.0
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCC
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTS 310 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 310 (1012)
.=.||||+.=|.-||.+.|+|-||--||+--...+..+||.|+.++.+..
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 44699999999999999999999999999866666788999999998753
No 182
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=11 Score=48.93 Aligned_cols=322 Identities=16% Similarity=0.146 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCc
Q 001796 634 EPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPE 713 (1012)
Q Consensus 634 ~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~ 713 (1012)
.+.|+.++++-++.. ...-+.-|+.-+..++.....+..+... ..||.|..+--+++..++.+...+...|..+..
T Consensus 955 PdLVYKFM~LAnh~A-~wnSk~GaAfGf~~i~~~a~~kl~p~l~--kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k- 1030 (1702)
T KOG0915|consen 955 PDLVYKFMQLANHNA-TWNSKKGAAFGFGAIAKQAGEKLEPYLK--KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSK- 1030 (1702)
T ss_pred hHHHHHHHHHhhhhc-hhhcccchhhchHHHHHHHHHhhhhHHH--HhhHHHhhhccCCcHHHHHHHHHHHHHhccChH-
Confidence 457888888866532 1223455555555565544333222221 347888888888999999998888888765522
Q ss_pred chHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhh--ccHHHHHHHhcCCChhHHHHH---HH
Q 001796 714 GVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIEL--DGLNAIINILKSGTMEAKENA---LS 788 (1012)
Q Consensus 714 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~~~~~a---~~ 788 (1012)
...+... ...+..|+.-+.+. ...++++++-||..|-.+.+. ..+.+. .....+.+.+.+=.+.+|+.| +.
T Consensus 1031 ~~vd~y~-neIl~eLL~~lt~k-ewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~ 1106 (1702)
T KOG0915|consen 1031 KVVDEYL-NEILDELLVNLTSK-EWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMDDIKESVREAADKAAR 1106 (1702)
T ss_pred HHHHHHH-HHHHHHHHHhccch-hHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111 12333444434333 567899999999999876552 222221 233444444444344555544 55
Q ss_pred HHHhccC----CCCHHHHHHHHHcCCHHHHHH--HHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCcc
Q 001796 789 ALFRFTD----PTNLEAQRNVVERGVYPLLVN--LLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHL 862 (1012)
Q Consensus 789 aL~~Ls~----~~~~~~~~~i~~~g~i~~Lv~--lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~ 862 (1012)
+|..++. .+++.--+.+. ..++|-|.+ .+ +.-+.+|..+...+..|+.++...-+.
T Consensus 1107 ~lsKl~vr~~d~~~~~~~~~~l-~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP---------------- 1168 (1702)
T KOG0915|consen 1107 ALSKLCVRICDVTNGAKGKEAL-DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKP---------------- 1168 (1702)
T ss_pred HHHHHHhhhcccCCcccHHHHH-HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcc----------------
Confidence 5554442 22222112221 224555542 22 445789999999999997766532110
Q ss_pred ccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHH-HHHHHHHHhh------------ccchhhhhHH-h------
Q 001796 863 CQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYE-AIQTLSTLVQ------------EGCQQRGVNV-L------ 922 (1012)
Q Consensus 863 ~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~-Al~aL~~L~~------------~~~~~~~~~~-i------ 922 (1012)
. -...|+.|++....-.+.|... ++.+ .+... ....-+.... |
T Consensus 1169 --~--------------~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1169 --H--------------FPKLIPLLLNAYSELEPQVLNYLSLRL-INIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred --h--------------hhHHHHHHHHHccccchHHHHHHHHhh-hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence 0 1345556666555433333332 2222 22211 0000011111 0
Q ss_pred hhcCCchHHHHHhccC-ChhhHhHHHHHHHHHhchHhhHhhhcccccchhhhhhhhcccCCchHHHHHHHHHHHHHhcc
Q 001796 923 HQEEAIKPTLEILTWG-TDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERYS 1000 (1012)
Q Consensus 923 ~~~~~v~~L~~ll~s~-~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~~ 1000 (1012)
.=..-+|.+.++++++ .-..|-.++..+.-+..- +-.+.-.-.+..+..+.-..++.++.+++.-+-|..+|.++.
T Consensus 1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r--~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR--LGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH--hccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 0012466677777632 344455555555555432 111111111223333333455788899999999988888773
No 183
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=94.58 E-value=0.11 Score=46.70 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHhccCCCcch
Q 001796 653 VRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD--TDSEVREIAINLLFLFSHHEPEGV 715 (1012)
Q Consensus 653 ~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~--~~~~v~~~a~~~L~~ls~~~~~~~ 715 (1012)
.+...++++.|+|..... ++..+++.||++.++..+.- .+|.+++.|+.++++|...++++.
T Consensus 2 ~K~~lvrlianl~~~~~~-~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ 65 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKE-VQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQ 65 (102)
T ss_pred cHHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHH
Confidence 467889999999986654 68999999999999998654 489999999999999998865544
No 184
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=94.39 E-value=0.015 Score=63.07 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=29.3
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHH
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAW 291 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~ 291 (1012)
+++.||||...++||+|++|||+.||.|-..-
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARNI 34 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHhh
Confidence 68999999999999999999999999997543
No 185
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.38 E-value=0.028 Score=61.42 Aligned_cols=46 Identities=15% Similarity=0.139 Sum_probs=39.6
Q ss_pred eecccccccCCC--c-eecCCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 262 FKCRITGTVMMD--P-VSLYTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 262 ~~cpi~~~~m~d--P-v~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
+.|-||+|-+.+ = ++++|+|.|-..||-.|+.+...+||.|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 799999998875 3 456999999999999999987678999998654
No 186
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.38 E-value=0.067 Score=49.32 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=60.1
Q ss_pred cCcchHHHHhccC-CChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhc
Q 001796 881 ANALPHLVKLLQG-RVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFM 955 (1012)
Q Consensus 881 ~gai~~Lv~lL~~-~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~ 955 (1012)
...+..|+++|.. .++.+...|+.=|+.++.. .|.|+..+.+.|+-..++.+|.++++++|..|.-++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~--~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH--YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHH--ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3567889999954 4556677799999999986 79999999999999999999999999999999999887753
No 187
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.35 E-value=0.73 Score=57.42 Aligned_cols=258 Identities=18% Similarity=0.180 Sum_probs=149.0
Q ss_pred hhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHh-c--cCCCcchHHhhhcCCChHHH
Q 001796 652 NVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLF-S--HHEPEGVVEYLLKPKRLEAL 728 (1012)
Q Consensus 652 ~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~l-s--~~~~~~~~~~l~~~~~i~~L 728 (1012)
+.+..|+..|..++.+-+.. ..=.-++|-++.++.++...||..|+.+|..+ + ..-+..... +.-.-..|.|
T Consensus 438 ~tK~~ALeLl~~lS~~i~de----~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan-iF~eYlfP~L 512 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDE----VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN-IFPEYLFPHL 512 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchH----HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch-hhHhhhhhhh
Confidence 47889999999998864322 11123468889999999999999998766543 2 111211111 2234456777
Q ss_pred HHhhcCCCchHHHHHHHHHHhccCCCCH---HHHHHHHhh-------------------------ccHHHHHHHhcCCCh
Q 001796 729 VGFLENDAKHDVQMAAAGLLANLPKSEL---SLTMKLIEL-------------------------DGLNAIINILKSGTM 780 (1012)
Q Consensus 729 v~lL~~~~~~~~~~~Aa~aL~nL~~~~~---~~~~~l~~~-------------------------g~i~~Lv~lL~~~~~ 780 (1012)
-.++.+.+...++.+-|..|+.|+..-. +..+.+..+ ++-.....|+....+
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 7777664455555554444554443111 111111111 122233344555555
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCC
Q 001796 781 EAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRA 860 (1012)
Q Consensus 781 ~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~ 860 (1012)
-+|+.....|.-||.--..+- ...=+++.|+..|++.++..|-+=-..+.-+
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfdsI~gv------------------------ 644 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFDSIVGV------------------------ 644 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHhhccce------------------------
Confidence 666666655555553210110 0111478888999888777765433333322
Q ss_pred ccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccch-hhhhHHhhhcCCchHHHHHhccCC
Q 001796 861 HLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQ-QRGVNVLHQEEAIKPTLEILTWGT 939 (1012)
Q Consensus 861 ~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~-~~~~~~i~~~~~v~~L~~ll~s~~ 939 (1012)
|..-+. +-++.+.+|.|.+-|.+..+-|+..|+.+|..|...+.. ......|. ....-++.++|
T Consensus 645 --si~VG~--------rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~-----~~v~PlL~hPN 709 (1431)
T KOG1240|consen 645 --SIFVGW--------RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDIL-----QDVLPLLCHPN 709 (1431)
T ss_pred --EEEEee--------eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHH-----HhhhhheeCch
Confidence 222221 123567777788889999999999999999999874221 11122222 23334677999
Q ss_pred hhhHhHHHHHHHHHhchH
Q 001796 940 DSLKEEALGFLEKVFMSK 957 (1012)
Q Consensus 940 ~~~~~~a~~aL~~l~~~~ 957 (1012)
.-+|..++.++..+.+.-
T Consensus 710 ~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 710 LWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999998888753
No 188
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.35 E-value=1.1 Score=43.89 Aligned_cols=127 Identities=11% Similarity=0.167 Sum_probs=91.1
Q ss_pred HHHHHcCChHHHHHHhhcCCC----ChhHHHHHHHHHHHhhccCc-cceecccCCccchhHHHHHHHHHHhccCCChhhH
Q 001796 580 ELISAAGGIPQVLELMFSSHV----PSNIIVKCSEILEKLSSDGI-KFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVR 654 (1012)
Q Consensus 580 ~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~a~~~L~nLa~~~~-~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~ 654 (1012)
..++..||+..|++++.++.. .......++.++..|-..|. .| -.....+|.+.+..+.....+..+.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-------d~l~~~FI~Kia~~Vn~~~~d~~i~ 77 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-------DTLSDSFIKKIASYVNSSAMDASIL 77 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-------hhccHHHHHHHHHHHccccccchHH
Confidence 457788999999999999874 22333555555555553221 11 1234678999999998766566789
Q ss_pred HHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcc
Q 001796 655 KPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEG 714 (1012)
Q Consensus 655 ~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~ 714 (1012)
+.++.+|-++..+++. ....+.+.=-++.|+.+++..+++++.+|..++..|-...++.
T Consensus 78 q~sLaILEs~Vl~S~~-ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 78 QRSLAILESIVLNSPK-LYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHHHHHHHhCCHH-HHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999999887764 3455555555899999999999999999999887765443433
No 189
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.14 E-value=2.5 Score=48.73 Aligned_cols=309 Identities=15% Similarity=0.096 Sum_probs=165.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhc
Q 001796 465 LFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKE 544 (1012)
Q Consensus 465 ~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~ 544 (1012)
|.|-.-|++.-..+...++.++..++..+- -... -...+..|-.+|++.....|..|.++|..|+.....+....+
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv--~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN- 342 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENV--GSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN- 342 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhcc--CHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC-
Confidence 344444444445677888888777764330 0111 112345556667778888999999999999986555443332
Q ss_pred CChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc-cCccce
Q 001796 545 GIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS-DGIKFL 623 (1012)
Q Consensus 545 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~-~~~~~~ 623 (1012)
+-+-.++.+.|..+...|..+|..-.. +++-..++. .|+..+.=+..+. +..+..++..|+. -.+++
T Consensus 343 ---~evEsLIsd~Nr~IstyAITtLLKTGt-~e~idrLv~--~I~sfvhD~SD~F-----KiI~ida~rsLsl~Fp~k~- 410 (898)
T COG5240 343 ---KEVESLISDENRTISTYAITTLLKTGT-EETIDRLVN--LIPSFVHDMSDGF-----KIIAIDALRSLSLLFPSKK- 410 (898)
T ss_pred ---hhHHHHhhcccccchHHHHHHHHHcCc-hhhHHHHHH--HHHHHHHhhccCc-----eEEeHHHHHHHHhhCcHHH-
Confidence 233345566677777778777766443 233332222 2344443333332 2344555555554 11110
Q ss_pred ecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHH
Q 001796 624 VDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINL 703 (1012)
Q Consensus 624 ~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~ 703 (1012)
...+.-|...|.. ....+.+..++.++..+..+.+. .++. ++..|..+.+++ +-.+-++.+
T Consensus 411 ----------~s~l~FL~~~L~~-eGg~eFK~~~Vdaisd~~~~~p~-skEr-----aLe~LC~fIEDc--ey~~I~vrI 471 (898)
T COG5240 411 ----------LSYLDFLGSSLLQ-EGGLEFKKYMVDAISDAMENDPD-SKER-----ALEVLCTFIEDC--EYHQITVRI 471 (898)
T ss_pred ----------HHHHHHHHHHHHh-cccchHHHHHHHHHHHHHhhCch-HHHH-----HHHHHHHHHhhc--chhHHHHHH
Confidence 1122222233322 22345777888887777665432 2232 235566666554 222334566
Q ss_pred HHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHH
Q 001796 704 LFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAK 783 (1012)
Q Consensus 704 L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 783 (1012)
|..|...+|..... ...+..+.+-+--. +..++.+|+.+|...+.+-.+ .+....+...|-+.+.+.+.++|
T Consensus 472 L~iLG~EgP~a~~P----~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVR 543 (898)
T COG5240 472 LGILGREGPRAKTP----GKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVR 543 (898)
T ss_pred HHHhcccCCCCCCc----chHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHH
Confidence 66666554422110 12233333311111 346888899999777664221 23334456677788999999999
Q ss_pred HHHHHHHHhccCCCCHHHHHHHH---HcCCHHHHHHHHh
Q 001796 784 ENALSALFRFTDPTNLEAQRNVV---ERGVYPLLVNLLQ 819 (1012)
Q Consensus 784 ~~a~~aL~~Ls~~~~~~~~~~i~---~~g~i~~Lv~lL~ 819 (1012)
..|.-+|.++-..+. ...+. +-|-||.|..-+.
T Consensus 544 drAsf~l~~~~~~da---~~pl~~sd~~~dipsle~~l~ 579 (898)
T COG5240 544 DRASFLLRNMRLSDA---CEPLFSSDELGDIPSLELELI 579 (898)
T ss_pred HHHHHHHHhhhhhhh---hhccccccccCCcchhHHhhh
Confidence 999999999864321 22222 2355777765543
No 190
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.12 E-value=0.022 Score=55.50 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=39.0
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCccc
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVL 306 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l 306 (1012)
.|.|-||.+=++.||+..|||.||-.|--+-+.. ..+|-+|+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 5999999999999999999999999997776665 56788887653
No 191
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=0.039 Score=58.58 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=42.9
Q ss_pred CCCceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCC
Q 001796 258 PLNAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLED 308 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~ 308 (1012)
+|+.=.||+|+.=-.+|-++ -||..||-.||-.+... +.+||+|+.|..-
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPASV 347 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcchH
Confidence 45667899999999999888 55999999999999984 8899999988653
No 192
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.80 E-value=3.4 Score=42.89 Aligned_cols=177 Identities=13% Similarity=0.140 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHH
Q 001796 654 RKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD-----TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEAL 728 (1012)
Q Consensus 654 ~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-----~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~L 728 (1012)
..+|+..|-.++++++ .+..+.++..---+-.+|.. +.+.+|-.+++.++.+...+..+....+...+++|.+
T Consensus 96 VcnaL~LlQcvASHpd--Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 96 VCNALALLQCVASHPD--TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred HHHHHHHHHHHhcCcc--hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 3667777777888887 45777777653345555543 3567999999999999988788888888999999999
Q ss_pred HHhhcCCCchHHHHHHHHHHhccCCCCHHHH---HHHHhh----ccHHH-HHHHhcCCChhHHHHHHHHHHhccCCCCHH
Q 001796 729 VGFLENDAKHDVQMAAAGLLANLPKSELSLT---MKLIEL----DGLNA-IINILKSGTMEAKENALSALFRFTDPTNLE 800 (1012)
Q Consensus 729 v~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~---~~l~~~----g~i~~-Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~ 800 (1012)
++.+..| .+..+..|.-++..+-.++.... +..-+- ..+.. +..+.+.++++....+++...+|+.+ +.
T Consensus 174 Lrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn--pr 250 (293)
T KOG3036|consen 174 LRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN--PR 250 (293)
T ss_pred HHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--HH
Confidence 9999988 45667778888877766555321 111111 12222 33445667889999999999999884 77
Q ss_pred HHHHHHHcC--C--HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 801 AQRNVVERG--V--YPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 801 ~~~~i~~~g--~--i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
.+..+...- . -..+-.+++ .++..|.--...+.|+
T Consensus 251 ar~aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l 289 (293)
T KOG3036|consen 251 ARAALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNL 289 (293)
T ss_pred HHHHHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHh
Confidence 766554321 0 111222332 2455666666677666
No 193
>PRK14707 hypothetical protein; Provisional
Probab=93.53 E-value=39 Score=45.68 Aligned_cols=393 Identities=16% Similarity=0.095 Sum_probs=169.7
Q ss_pred hcCCcccccccccc--CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHH-HHHHHHHHHHhh
Q 001796 414 DYGGWDHIVPCLGR--DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRES-AECAEKILQQLF 490 (1012)
Q Consensus 414 ~~g~i~~lv~lL~~--~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~A~~~L~~La 490 (1012)
+..++-..+..|+. +...+.+|+..|-.-...+.+. ++.+...+.-..|-.+-+-++..+ +..|..+-..|.
T Consensus 245 ~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l-----~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 245 KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGL-----RKALDPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHH-----HHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 33445555666665 4567777777766544322211 222222222233333444455544 444444444664
Q ss_pred cCChhhHHHHhhcCCcHHHHHHHhcC-ChHHHHHHHHHHH-hcccccchhhHhhhcCChHHHHhhhcCCChh-HHHHHHH
Q 001796 491 DVDEENFCRAAKSGWYKPLIDRIIQG-AESSRILMMKALL-SMELVDSNLELLGKEGIIPPLLGLVGSGNFQ-SKELSLS 567 (1012)
Q Consensus 491 ~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~~ 567 (1012)
.+++-+ .-.+.-.+...+.-|+.- +..+-..|+.+|. .++.+++-+..+--.|+-..|-.+-+.++.. ++..|..
T Consensus 320 -~d~~l~-~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 320 -DDPELC-KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred -ccHhhh-hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 343333 333444555666666543 3334444555554 5777777777765455444443344555544 4444444
Q ss_pred HHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc---cCccceecccCCccchhHHHHHHHHHH
Q 001796 568 VLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS---DGIKFLVDEKGNRLELEPIVTNLLTLQ 644 (1012)
Q Consensus 568 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~---~~~~~~~~~~g~~l~~~~~v~~Ll~ll 644 (1012)
.=..+..+++-++.+-..| +..++.-|..-++. ..|..+-..|+. +..+-. . .+ ...-|.+.+..+
T Consensus 398 LA~~l~~d~~l~~~~~~Q~-van~lnalsKWPd~----~~C~~aa~~lA~~la~d~~l~--~---~~-~p~~va~~Lnal 466 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQG-VSNALNALAKWPDL----PICGQAVSALAGRLAHDTELC--K---AL-DPINVTQALDAL 466 (2710)
T ss_pred HHHHhccChhhhhhcchhh-HHHHHHHhhcCCcc----hhHHHHHHHHHHHHhccHHHH--h---hc-ChHHHHHHHHHh
Confidence 4455556666666665554 55566666554333 233333333433 110000 0 00 111234444444
Q ss_pred hccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHH-HHHHHHHHHHHhccCCCcchHHhhhcCC
Q 001796 645 QNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSE-VREIAINLLFLFSHHEPEGVVEYLLKPK 723 (1012)
Q Consensus 645 ~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~-v~~~a~~~L~~ls~~~~~~~~~~l~~~~ 723 (1012)
+.--+++.+.+.+-.....|+...+ .++.+--.++...|-.+-+-++.. -.+.+.++...+... ..... .....
T Consensus 467 SKWPd~p~c~~aa~~La~~l~~~~~--l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~--~~l~~-~~~~~ 541 (2710)
T PRK14707 467 SKWPDTPICGQTASALAARLAHERR--LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE--LQLRK-AFDAH 541 (2710)
T ss_pred hcCCCChhHHHHHHHHHHHhcccHH--HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc--hhhhh-hhhhH
Confidence 4444444333333333333443332 344443333333333333334332 222222333333221 11111 11223
Q ss_pred ChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhc-CCChh-HHHHHHHHHHhccCCCCHHH
Q 001796 724 RLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILK-SGTME-AKENALSALFRFTDPTNLEA 801 (1012)
Q Consensus 724 ~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~-~~~~a~~aL~~Ls~~~~~~~ 801 (1012)
.+..+++-|....+......|+..|..+...++..+..+- ...|..+++.|. .++.. .++.+.++-..+.. .+..
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~--~~~l 618 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLVD--EPDL 618 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc--Chhh
Confidence 3444455453333444455555566665554554444443 444666666554 34433 34444444444444 2444
Q ss_pred HHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHH
Q 001796 802 QRNVVERGVYPLLVNLLQ-IGSITAKARAAALI 833 (1012)
Q Consensus 802 ~~~i~~~g~i~~Lv~lL~-s~~~~vk~~Aa~aL 833 (1012)
+..+... .+..+++-|. -........|+..|
T Consensus 619 r~~l~~q-~lan~lNALSKWP~s~~C~~Aa~rL 650 (2710)
T PRK14707 619 RKELDPV-DVTNVLNALSKWPGTEVCAEVARLL 650 (2710)
T ss_pred hhhccHH-HHHHHHhhhhcCCCchHHHHHHHHH
Confidence 3333222 3444444443 23333334444443
No 194
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.50 E-value=0.026 Score=62.23 Aligned_cols=45 Identities=11% Similarity=0.207 Sum_probs=37.9
Q ss_pred CceecccccccCCCce----ecCCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 260 NAFKCRITGTVMMDPV----SLYTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv----~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
+-=.||+|+|=|.+-| ++.|.|+|--+|+.+|++. +||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 3457999999999887 5699999999999999864 8999876544
No 195
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=0.061 Score=54.52 Aligned_cols=53 Identities=17% Similarity=0.372 Sum_probs=46.1
Q ss_pred CceecccccccCCCce----ecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCcc
Q 001796 260 NAFKCRITGTVMMDPV----SLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRS 313 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv----~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 313 (1012)
..|.||+|.+.+.+-+ +-+|||.++..|.++.+.. ...||+|+.++...++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence 6799999999988753 3499999999999998865 789999999999988876
No 196
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=30 Score=43.97 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=85.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcc-----CCCcchHHhhhcCCChHHHHHhhcCCCc-hHHHHHH--HHHHhccCCCCHH
Q 001796 686 LSLLDDTDSEVREIAINLLFLFSH-----HEPEGVVEYLLKPKRLEALVGFLENDAK-HDVQMAA--AGLLANLPKSELS 757 (1012)
Q Consensus 686 v~ll~~~~~~v~~~a~~~L~~ls~-----~~~~~~~~~l~~~~~i~~Lv~lL~~~~~-~~~~~~A--a~aL~nL~~~~~~ 757 (1012)
+-.+...+...+..|..+|.++.. ..+++. ....+...+.++..+-- +.....+ .-++..+.....+
T Consensus 744 IL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-----~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~ 818 (1176)
T KOG1248|consen 744 ILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-----ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN 818 (1176)
T ss_pred HHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-----hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc
Confidence 333466788889999888888762 111111 01245666666654411 1122222 2222222221111
Q ss_pred HHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 758 LTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 758 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
+.....=.+.+..+..+|.++++++...|++.+..++.. -|+..-.-.....+|.+..++++++-.++.++-..|..|
T Consensus 819 ~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~-~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 819 ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYK-FPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHc-CCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 111122234555666678889999999999999998876 355333333344899999999998888988888888877
No 197
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.08 Score=54.89 Aligned_cols=49 Identities=18% Similarity=0.086 Sum_probs=41.5
Q ss_pred CCceecccccccCCCceecC-CCccccHHHHHHHHhc-CCCCCCCCCcccC
Q 001796 259 LNAFKCRITGTVMMDPVSLY-TGTTCERAAIEAWLDR-REKTDPETGVVLE 307 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~~-~g~t~~r~~i~~~~~~-~~~~cp~~~~~l~ 307 (1012)
..+..||+|++-=.-|.++. |||.||--||..-+.. ...+||.|+.+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 35889999999999999995 9999999999986653 3579999998654
No 198
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=92.61 E-value=7.3 Score=48.44 Aligned_cols=259 Identities=15% Similarity=0.125 Sum_probs=147.7
Q ss_pred HhhcCCcHHHHHHHhcC-----ChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcC-----CChhHHHHHHHHH
Q 001796 500 AAKSGWYKPLIDRIIQG-----AESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGS-----GNFQSKELSLSVL 569 (1012)
Q Consensus 500 i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L 569 (1012)
..+..+.++.|+-|.+. +++.+...+.+ +.+.|++..|+.++.+ .........+..|
T Consensus 80 Gl~geAtE~~v~~l~~~~~~~~d~e~~~~~~~v-------------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL 146 (802)
T PF13764_consen 80 GLDGEATEEFVESLEDDSEEEEDPEQEFKIASV-------------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLL 146 (802)
T ss_pred CCCCccchhhHhhccCccccccCHHHHHHHHHH-------------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHH
Confidence 34455666666666542 23333333333 3367888888888854 2345777788889
Q ss_pred HHhcCCCchHHHHHHcCChHHHHHHhhcC----C--CChhHHHHHHHHHHHhhccCccce-------ecccCCccchhHH
Q 001796 570 VKLSGCSKNRELISAAGGIPQVLELMFSS----H--VPSNIIVKCSEILEKLSSDGIKFL-------VDEKGNRLELEPI 636 (1012)
Q Consensus 570 ~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~----~--~~~~~~~~a~~~L~nLa~~~~~~~-------~~~~g~~l~~~~~ 636 (1012)
...+..+.||+++++.|+++.|++.+... . ....+.+.-..++..|..+....- ....|..-....-
T Consensus 147 ~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~ 226 (802)
T PF13764_consen 147 RYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQ 226 (802)
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHH
Confidence 99999999999999999999999988632 1 113455777777777665221110 1111100112445
Q ss_pred HHHHHHHHhccC--CChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHh--hc---CCCHHHHHHHH-HHHHHhc
Q 001796 637 VTNLLTLQQNFN--SSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSL--LD---DTDSEVREIAI-NLLFLFS 708 (1012)
Q Consensus 637 v~~Ll~ll~~~~--~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~l--l~---~~~~~v~~~a~-~~L~~ls 708 (1012)
+.-|+..+.+.. ..+.+.+..+++|-.|+....+. .+.+++. ....+++ .. .++..+.-.+. .+...+-
T Consensus 227 v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~-m~~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~ 303 (802)
T PF13764_consen 227 VEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK-MDALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIP 303 (802)
T ss_pred HHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH-HHHHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCC
Confidence 666666666532 34567888999999998876553 2333221 1222222 11 11222222222 2332332
Q ss_pred -cCCCcchHHhhhcCCChHHHHHhhcCCC-------chHHH--------HHHHHHHhccCCCCHHHHHHHHhhccHHHHH
Q 001796 709 -HHEPEGVVEYLLKPKRLEALVGFLENDA-------KHDVQ--------MAAAGLLANLPKSELSLTMKLIELDGLNAII 772 (1012)
Q Consensus 709 -~~~~~~~~~~l~~~~~i~~Lv~lL~~~~-------~~~~~--------~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv 772 (1012)
...+...+..+.+.|.+...++.|...- .++.+ ..+...|..|+.+... .+.++..++++.+.
T Consensus 304 ~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH 382 (802)
T PF13764_consen 304 NNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEP-TQLLIAEQLLPLLH 382 (802)
T ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHH
Confidence 2234567778888999998888774321 12222 2466777777776665 44456666775555
Q ss_pred HHh
Q 001796 773 NIL 775 (1012)
Q Consensus 773 ~lL 775 (1012)
.|=
T Consensus 383 ~LE 385 (802)
T PF13764_consen 383 RLE 385 (802)
T ss_pred Hhh
Confidence 553
No 199
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=92.53 E-value=5.7 Score=44.07 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=107.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcccccchhhHhhh--cCChHHHHhhhcCCChhHHHHHHHHHHHhcCC---CchHHHHH
Q 001796 509 LIDRIIQGAESSRILMMKALLSMELVDSNLELLGK--EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGC---SKNRELIS 583 (1012)
Q Consensus 509 Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~---~~~~~~i~ 583 (1012)
.++.+.+.....|..++..+.++....-....+.+ ...+..+.+.++.+..+-+..|+.++.-++.. .+....+.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 34445555667777777777776543322222222 34567788888877765566777777777754 23444554
Q ss_pred HcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchh---HHHHHHHHHH--hccC--------CC
Q 001796 584 AAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELE---PIVTNLLTLQ--QNFN--------SS 650 (1012)
Q Consensus 584 ~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~---~~v~~Ll~ll--~~~~--------~~ 650 (1012)
+ ...|.|..++..++.....+..|+.+|+-++.-+ ..+ .-... ..+..++... +... ++
T Consensus 128 ~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~------~~d-~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 128 E-ELKPVLKRILTDSSASPKARAACLEALAICTFVG------GSD-EEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhh------cCC-hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 4 4678899999887666555566666666655310 000 00011 2233222221 1111 12
Q ss_pred hhhHHHHHHHHHHhcc-CchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 001796 651 YNVRKPALRALFRICK-SEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFS 708 (1012)
Q Consensus 651 ~~~~~~al~aL~~L~~-~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls 708 (1012)
+.+...|+.+-.-|.. -+...+...+ ...++.|..+|.+++.+||.+|-.+|..+-
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3456666655444433 3432222221 345799999999999999999988887763
No 200
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.51 E-value=2.7 Score=51.30 Aligned_cols=162 Identities=17% Similarity=0.081 Sum_probs=119.7
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHH
Q 001796 739 DVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLL 818 (1012)
Q Consensus 739 ~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL 818 (1012)
....+.=.+|+++..++.- .. ..|-+++.+.+.+.++|+-.--=|.+++.. .|+.+. . +++.+.+=+
T Consensus 35 ~kidAmK~iIa~M~~G~dm--ss-----Lf~dViK~~~trd~ElKrL~ylYl~~yak~-~P~~~l--L---avNti~kDl 101 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDM--SS-----LFPDVIKNVATRDVELKRLLYLYLERYAKL-KPELAL--L---AVNTIQKDL 101 (757)
T ss_pred HHHHHHHHHHHHHhcCCCh--HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHhcc-CHHHHH--H---HHHHHHhhc
Confidence 3334444577777766551 11 255566666677888888777777777775 465322 1 578888888
Q ss_pred hcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHH
Q 001796 819 QIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHAT 898 (1012)
Q Consensus 819 ~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v 898 (1012)
++.++.+|-.|.+.+..+-. ..++ ..+++++.+++.++++.|
T Consensus 102 ~d~N~~iR~~AlR~ls~l~~-------------------------------------~el~-~~~~~~ik~~l~d~~ayV 143 (757)
T COG5096 102 QDPNEEIRGFALRTLSLLRV-------------------------------------KELL-GNIIDPIKKLLTDPHAYV 143 (757)
T ss_pred cCCCHHHHHHHHHHHHhcCh-------------------------------------HHHH-HHHHHHHHHHccCCcHHH
Confidence 99999999999999987711 1222 467899999999999999
Q ss_pred HHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 899 AYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 899 ~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
+..|+.|+..+-. -..+...+.|.+..+..++.+.+|.+..+|..+|..+...
T Consensus 144 Rk~Aalav~kly~-----ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 144 RKTAALAVAKLYR-----LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHh-----cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999874 3445667777888888899999999999999999888754
No 201
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.46 E-value=0.1 Score=54.71 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=37.8
Q ss_pred ceecccccccC--CCce-ecCCCccccHHHHHHHHhcCCCCCCCCCcccCC
Q 001796 261 AFKCRITGTVM--MDPV-SLYTGTTCERAAIEAWLDRREKTDPETGVVLED 308 (1012)
Q Consensus 261 ~~~cpi~~~~m--~dPv-~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~ 308 (1012)
..-|-||++=+ .|-+ +++|.|.|-+.||.+|+..-...||+|+.+++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 35688887644 3444 459999999999999998656789999987754
No 202
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.35 E-value=9.4 Score=40.47 Aligned_cols=230 Identities=15% Similarity=0.137 Sum_probs=129.0
Q ss_pred ChHHHHHHHHHHHhcccc-cchhhHhh-hcCChHHHHh-------hhcCCC-----hhHHHHHHHHHHHhcCCCchHHHH
Q 001796 517 AESSRILMMKALLSMELV-DSNLELLG-KEGIIPPLLG-------LVGSGN-----FQSKELSLSVLVKLSGCSKNRELI 582 (1012)
Q Consensus 517 ~~~~~~~a~~aL~~Ls~~-~~~~~~i~-~~g~i~~Lv~-------lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i 582 (1012)
+++.|..|..-|..--.. ++-...+- .-|.+..|++ .++.++ ..-..+|+..|.-++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 455666665555543222 22222222 3666666654 222222 134467888888999999999999
Q ss_pred HHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 001796 583 SAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALF 662 (1012)
Q Consensus 583 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~ 662 (1012)
.++...--|..+|+..+..... +.+|-..+.++.
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~----------------------------------------------E~LRLtsLGVIg 121 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPF----------------------------------------------EYLRLTSLGVIG 121 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHH----------------------------------------------HHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhcccccccc----------------------------------------------chhhHhHHHHHH
Confidence 9999877788888765433110 225666777777
Q ss_pred HhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHH
Q 001796 663 RICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQM 742 (1012)
Q Consensus 663 ~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~ 742 (1012)
.+.+.++..+...+.+...+|.++..++.++.-.+.-|.-++..+-.+ ..+
T Consensus 122 aLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~d-d~G---------------------------- 172 (262)
T PF04078_consen 122 ALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLD-DVG---------------------------- 172 (262)
T ss_dssp HHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHS-HHH----------------------------
T ss_pred HHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcc-hhH----------------------------
Confidence 787765555677888889999999999888877777777777664333 011
Q ss_pred HHHHHHhccCCCCHHHHHHHHhhccHHHHH-HHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC
Q 001796 743 AAAGLLANLPKSELSLTMKLIELDGLNAII-NILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG 821 (1012)
Q Consensus 743 ~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv-~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 821 (1012)
|..+|. ..+.-.++ ..++..++ .+.+..+++..+..+++-.+|+.+ +..+..+.. .+| +.|+++
T Consensus 173 -----L~yiC~-t~eRf~av--~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn--prar~aL~~--~LP---~~Lrd~ 237 (262)
T PF04078_consen 173 -----LNYICQ-TAERFFAV--AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN--PRAREALRQ--CLP---DQLRDG 237 (262)
T ss_dssp -----HHHHTS-SHHHHHHH--HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS--TTHHHHHHH--HS----GGGTSS
T ss_pred -----HHHHhc-CHHHHHHH--HHHHHHHHHHHccCCChhHHHHHHHHHHHHccC--HHHHHHHHH--hCc---HHHhcH
Confidence 222222 11111111 11222233 345677889999999999999885 555554442 122 233332
Q ss_pred --------CHHHHHHHHHHHHhh
Q 001796 822 --------SITAKARAAALIGTL 836 (1012)
Q Consensus 822 --------~~~vk~~Aa~aL~nL 836 (1012)
++.++..-.+.+.|+
T Consensus 238 ~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 238 TFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TTTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 455555555555554
No 203
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.07 E-value=1.1 Score=47.45 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhccc-ccchhhHhhhcCChHHHHhhhcC-CChhHHHHHHHHHHHhc-CCCchHHHHHHcCChHHHHHHhh
Q 001796 520 SRILMMKALLSMEL-VDSNLELLGKEGIIPPLLGLVGS-GNFQSKELSLSVLVKLS-GCSKNRELISAAGGIPQVLELMF 596 (1012)
Q Consensus 520 ~~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~ 596 (1012)
....|+..|..++. ++..+..+.+...+..|+++|.. ..+.++-.++.+|..+- .++.|...+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 34567788888877 77888888899999999999954 45778888888877665 67889999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHhhc
Q 001796 597 SSHVPSNIIVKCSEILEKLSS 617 (1012)
Q Consensus 597 ~~~~~~~~~~~a~~~L~nLa~ 617 (1012)
+...+..++..+.+.|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 998887777888888776554
No 204
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.02 E-value=0.93 Score=46.21 Aligned_cols=125 Identities=18% Similarity=0.191 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHHhccCCCcchHHhh---------------hcCCChHHHHHhhcCC-----CchHHHHHHHHHHhc
Q 001796 691 DTDSEVREIAINLLFLFSHHEPEGVVEYL---------------LKPKRLEALVGFLEND-----AKHDVQMAAAGLLAN 750 (1012)
Q Consensus 691 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~l---------------~~~~~i~~Lv~lL~~~-----~~~~~~~~Aa~aL~n 750 (1012)
+++......++.+|.|++... +.....+ .+...+..|++.+..+ .........+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSD-SGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccch-HHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 344445566667777777652 2221111 1234677888877542 224455678899999
Q ss_pred cCCCCHHHHHHHHhh--cc--HHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHc---CCHHHHHHHHh
Q 001796 751 LPKSELSLTMKLIEL--DG--LNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVER---GVYPLLVNLLQ 819 (1012)
Q Consensus 751 L~~~~~~~~~~l~~~--g~--i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~---g~i~~Lv~lL~ 819 (1012)
++. .++.++.+++. +. +..|+-+..+.+..-|+.+++++.|+|... .. ...+... +++|.|.--|.
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~-~~-H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT-DS-HEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH-hH-HHHhcCchhhhhHHHHHhhcc
Confidence 999 56668888853 44 677777778787778899999999999963 33 2334432 44555544443
No 205
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.79 E-value=0.84 Score=46.54 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHH---------------hhcCCcHHHHHHHhcC------ChHHHHHHHHHHHhcc
Q 001796 474 PVRESAECAEKILQQLFDVDEENFCRA---------------AKSGWYKPLIDRIIQG------AESSRILMMKALLSME 532 (1012)
Q Consensus 474 ~~~~~~~~A~~~L~~La~~~~~~~~~i---------------~~~g~i~~Lv~lL~~~------~~~~~~~a~~aL~~Ls 532 (1012)
++......++++|.|++..+......+ .+..++..|++.+..| ....-...+..+.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 344566777888888875443333222 1234677788888662 2334557788999999
Q ss_pred cccchhhHhhh--cCC--hHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHc---CChHHHHHHhh
Q 001796 533 LVDSNLELLGK--EGI--IPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAA---GGIPQVLELMF 596 (1012)
Q Consensus 533 ~~~~~~~~i~~--~g~--i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~---g~i~~Lv~lL~ 596 (1012)
..++.|..+.+ .+. +..|+..+.+.+..-+.-++.+|.|+|...+....+... +.+|.|+--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999986 334 667777777777777889999999999988877777653 45666655554
No 206
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.69 E-value=3.2 Score=43.06 Aligned_cols=145 Identities=14% Similarity=0.081 Sum_probs=95.7
Q ss_pred HHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCC-----ChhHHHHHHHHHHHhcCCCc--hHHHHHHcCChHHHHHH
Q 001796 522 ILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSG-----NFQSKELSLSVLVKLSGCSK--NRELISAAGGIPQVLEL 594 (1012)
Q Consensus 522 ~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~g~i~~Lv~l 594 (1012)
-++...|.-++++++.|..+.++..--.|-.+|... .+-++-.+++++..|...++ .-..+...++||..++.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 366667777888999999999988766666666433 25588999999999996544 34667889999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhhc--cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCch
Q 001796 595 MFSSHVPSNIIVKCSEILEKLSS--DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEA 669 (1012)
Q Consensus 595 L~~~~~~~~~~~~a~~~L~nLa~--~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~ 669 (1012)
+..++.-. +..|..++..+-. .|-..+............++..++.-+. ..+++++-++++++..+|+.++.
T Consensus 177 me~GSelS--KtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~-~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 177 MESGSELS--KTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLV-SMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HhcccHHH--HHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcCCHH
Confidence 99997653 3667777777665 2221111110000001223333333332 23456788999999999987764
No 207
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=0.14 Score=55.12 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=40.3
Q ss_pred CCceecccccccCCCc-------------eecCCCccccHHHHHHHHhcCCCCCCCCCccc
Q 001796 259 LNAFKCRITGTVMMDP-------------VSLYTGTTCERAAIEAWLDRREKTDPETGVVL 306 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dP-------------v~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l 306 (1012)
-.|-.|-||++-|-.| =-++|||.+--.|++-|... ..|||.||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 3688899999886544 57899999999999999986 78999999985
No 208
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.56 E-value=2.8 Score=52.53 Aligned_cols=279 Identities=15% Similarity=0.126 Sum_probs=153.0
Q ss_pred CHHHHHHHHHHHHHhhcC-ChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc----ccchhhHhhhcCChHH
Q 001796 475 VRESAECAEKILQQLFDV-DEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL----VDSNLELLGKEGIIPP 549 (1012)
Q Consensus 475 ~~~~~~~A~~~L~~La~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~i~~ 549 (1012)
..+.+.+|.+.|..++.. ++++ .-..++|.++.++.+...++|..|+.+|..+.. .+..-..|.-.=.+|.
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~----~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEV----KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHH----HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 457889999999988742 2222 234578999999999999999999999988654 1223334445556788
Q ss_pred HHhhhcCCC-hhHHHHHHHHHHHhcCCC----chHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCcccee
Q 001796 550 LLGLVGSGN-FQSKELSLSVLVKLSGCS----KNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLV 624 (1012)
Q Consensus 550 Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~ 624 (1012)
|-.++.+.+ ..++-.-+..|..|+... +.-..+..+| +++..+..... + .
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g-------~~n~~nset~~-~----------------~- 566 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG-------MLNDPNSETAP-E----------------Q- 566 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc-------cccCccccccc-c----------------c-
Confidence 888887733 446666666777666421 1111112222 22222110000 0 0
Q ss_pred cccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcC-cHHHHHHhhcCCCHHHHHHHHHH
Q 001796 625 DEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKAN-GVSLILSLLDDTDSEVREIAINL 703 (1012)
Q Consensus 625 ~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g-~v~~Lv~ll~~~~~~v~~~a~~~ 703 (1012)
..+...-.....|..++.-+-.. +++-+++..+..+.-||.+=+.. .... .+..|+.+|.+.+..+|-+=..-
T Consensus 567 ~~~~~~~~L~~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~FFGk~-----ksND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 567 NYNTELQALHHTVEQMVSSLLSD-SPPIVKRALLESIIPLCVFFGKE-----KSNDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred ccchHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHhhhc-----ccccchHHHHHHHhcCccHHHHHHHHhh
Confidence 00000000112233333222222 22457787778888888743210 1112 25778899998876666544444
Q ss_pred HHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHH
Q 001796 704 LFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAK 783 (1012)
Q Consensus 704 L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~ 783 (1012)
+.-++..-+.. -++...+|.|.+-|..+ .+.+...|+++|.-|....--.+..+.+ .+....-+|.+++.-+|
T Consensus 641 I~gvsi~VG~r----s~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR 713 (1431)
T KOG1240|consen 641 IVGVSIFVGWR----SVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIR 713 (1431)
T ss_pred ccceEEEEeee----eHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHH
Confidence 43333221111 02344566666667665 5567777888777776532211222221 33344445677788889
Q ss_pred HHHHHHHHhccC
Q 001796 784 ENALSALFRFTD 795 (1012)
Q Consensus 784 ~~a~~aL~~Ls~ 795 (1012)
..+++++.....
T Consensus 714 ~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 714 RAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHh
Confidence 999888877654
No 209
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.52 E-value=4.2 Score=43.04 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHhhcCChhhHHHH-hhcCCcHHHHHHHhcC-----C----h---HHHHHHHHHHHhcccccchhhHh
Q 001796 475 VRESAECAEKILQQLFDVDEENFCRA-AKSGWYKPLIDRIIQG-----A----E---SSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 475 ~~~~~~~A~~~L~~La~~~~~~~~~i-~~~g~i~~Lv~lL~~~-----~----~---~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
+++.|+.|...|..--+..++--..+ -.-|.+..|++-+-+- + . .---+|+..|.-++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 55667777666654432222222222 3456666666554321 1 1 11235566666788899999999
Q ss_pred hhcCChHHHHhhhcCCC-----hhHHHHHHHHHHHhcCCC--chHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001796 542 GKEGIIPPLLGLVGSGN-----FQSKELSLSVLVKLSGCS--KNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEK 614 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~n 614 (1012)
.++...-.|...|+..+ +.++-.++++++.|...+ +.-..+...+.+|..++.|..++.- .+..|..++..
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel--SKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL--SKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH--HHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 99999888888886544 358889999999999743 4456778899999999999988544 34677888887
Q ss_pred hhc--cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHH
Q 001796 615 LSS--DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVV 677 (1012)
Q Consensus 615 La~--~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~ 677 (1012)
+-. .|................++..++.-+. ..+++++-++.+++...|+.++. .+.++.
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~-~~pS~RLLKhIIrCYlRLsdnpr--ar~aL~ 227 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV-KQPSPRLLKHIIRCYLRLSDNPR--AREALR 227 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH-HS--HHHHHHHHHHHHHHTTSTT--HHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc-cCCChhHHHHHHHHHHHHccCHH--HHHHHH
Confidence 765 2322222111111112334444444332 23467888999999999988776 345444
No 210
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=11 Score=45.10 Aligned_cols=129 Identities=22% Similarity=0.123 Sum_probs=91.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHH
Q 001796 683 SLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKL 762 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l 762 (1012)
+.+-+++.+.++-+|...+-.+..--.. . ...++|..|+..--+..+.+++.+|..+|+-.+..+++
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~alAy~G--T------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----- 588 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLALAYVG--T------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----- 588 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHHHHHhc--c------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence 3445566777777777665444332111 1 12456777777755555789999999999999988887
Q ss_pred HhhccHHHHHHHhc-CCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 763 IELDGLNAIINILK-SGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 763 ~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
.+|..+++|. +.++.+|-.++.+|.-.|.++... . +|..|-.+..+...-||+.|..+++.+
T Consensus 589 ----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~--e------Ai~lLepl~~D~~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 589 ----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK--E------AINLLEPLTSDPVDFVRQGALIALAMI 651 (929)
T ss_pred ----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH--H------HHHHHhhhhcChHHHHHHHHHHHHHHH
Confidence 3777888775 458999999999999988874332 1 355555666677777999999999877
No 211
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.12 E-value=0.49 Score=42.45 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=49.4
Q ss_pred cCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHH--HcCChHHHHHHhhcCCCChhHHHHHHHHHHHhh
Q 001796 544 EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELIS--AAGGIPQVLELMFSSHVPSNIIVKCSEILEKLS 616 (1012)
Q Consensus 544 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa 616 (1012)
.-.+|+++..+.+.+.++|..|+.+|+|++.... ..+. -....+.|.+++.+.+.. ...+++.|-+|-
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~---Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDEN---VRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHh
Confidence 4568999999999999999999999999986433 3332 234567777777666554 266777776653
No 212
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=90.98 E-value=0.36 Score=33.12 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 811 YPLLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 811 i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
+|.+++++++.+++||..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999843
No 213
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.85 E-value=23 Score=43.94 Aligned_cols=456 Identities=16% Similarity=0.142 Sum_probs=222.7
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc----ccchhhHhhhcC
Q 001796 470 LIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL----VDSNLELLGKEG 545 (1012)
Q Consensus 470 lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g 545 (1012)
+|++.+.+.+......++.+...+++|-.+..+.--+|.++.-+..-+..+|...+..|-- +. +-..+..
T Consensus 475 FLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEy-AVtvvncvPeqEL----- 548 (2799)
T KOG1788|consen 475 FLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEY-AVTVVNCVPEQEL----- 548 (2799)
T ss_pred HHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHH-HHhhhccCcHHHH-----
Confidence 4556677788888889999999999999999999999999888875555555544443321 11 0111111
Q ss_pred ChHHHHhhhcCCC-hhHHHHHHHHHHHhc-CCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc------
Q 001796 546 IIPPLLGLVGSGN-FQSKELSLSVLVKLS-GCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS------ 617 (1012)
Q Consensus 546 ~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~------ 617 (1012)
-.|.-+|..+- ..++...+.....|- .+...++.+.+-|.+..|-..++...--...-.. .-......
T Consensus 549 --lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqy--sgvsehydrnpss~ 624 (2799)
T KOG1788|consen 549 --LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQY--SGVSEHYDRNPSSP 624 (2799)
T ss_pred --HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchh--hhHHHHhhcCCCCc
Confidence 12333444332 223333333333433 4456678888999999998888763100000000 00111111
Q ss_pred ------cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC
Q 001796 618 ------DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD 691 (1012)
Q Consensus 618 ------~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~ 691 (1012)
+....++..........+-.+ +...+..- ...-.+|..+-++... ..+.+.++.|+..+++++
T Consensus 625 sf~~~ld~~daiisspklmeSgsgklp-lfevllti-------tvgwDcLisllKnnte-NqklFreanGvklilpfl-- 693 (2799)
T KOG1788|consen 625 SFKQHLDSQDAIISSPKLMESGSGKLP-LFEVLLTI-------TVGWDCLISLLKNNTE-NQKLFREANGVKLILPFL-- 693 (2799)
T ss_pred hhhhccccccceeecchhhcccCCccc-hhhhhhhh-------hchHHHHHHHHhccch-hhHHHHhhcCceEEEEee--
Confidence 011111111100000000001 11111000 0112234444444332 347778888888888887
Q ss_pred CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCc-----------hHHHHHHHHHHhccCCCCHHHHH
Q 001796 692 TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAK-----------HDVQMAAAGLLANLPKSELSLTM 760 (1012)
Q Consensus 692 ~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~-----------~~~~~~Aa~aL~nL~~~~~~~~~ 760 (1012)
-+.+.|...+.++.+|-...+.. +....+-.+|+.|+++.. .......+++++...-.+...+.
T Consensus 694 indehRSslLrivscLitvdpkq-----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqr 768 (2799)
T KOG1788|consen 694 INDEHRSSLLRIVSCLITVDPKQ-----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQR 768 (2799)
T ss_pred echHHHHHHHHHHHHHhccCccc-----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchhee
Confidence 34566777777777765443432 123446678888877421 12345677888887765666677
Q ss_pred HHHhhccHHHHHHHhcC--C--------ChhHHHHHHHHHHhc---cCCCCHHHHHHHHHcCCHHHHHHHHhcCC---HH
Q 001796 761 KLIELDGLNAIINILKS--G--------TMEAKENALSALFRF---TDPTNLEAQRNVVERGVYPLLVNLLQIGS---IT 824 (1012)
Q Consensus 761 ~l~~~g~i~~Lv~lL~~--~--------~~~~~~~a~~aL~~L---s~~~~~~~~~~i~~~g~i~~Lv~lL~s~~---~~ 824 (1012)
.+.++|+...|...|.. + +..+--.-...|..+ +...++.++..+...---..+..+|+... ..
T Consensus 769 vFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvn 848 (2799)
T KOG1788|consen 769 VFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVN 848 (2799)
T ss_pred ehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceec
Confidence 78899998888876532 1 111111222222221 11111222221111111222333333211 00
Q ss_pred HHHHHHHHHHhhccCCcCCccCCCCCcccccC----CCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHH
Q 001796 825 AKARAAALIGTLSTSSPKFTDMPESAGCWCFR----PSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAY 900 (1012)
Q Consensus 825 vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~----~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~ 900 (1012)
..+.....|..++..+-.- +...+..--|.- .........+.|.-. ....++..+|++..|++.+-...+.++.
T Consensus 849 ler~viqlllElalevlvp-pfLtSEsaAcaeVfelednifavntPsGqfn-pdk~~iynagavRvlirslLlnypK~ql 926 (2799)
T KOG1788|consen 849 LERHVIQLLLELALEVLVP-PFLTSESAACAEVFELEDNIFAVNTPSGQFN-PDKQKIYNAGAVRVLIRSLLLNYPKLQL 926 (2799)
T ss_pred chHHHHHHHHHHHHHhhCC-chhhhhHHHHHHHhhcccceeeeccCCCCcC-chHhhhcccchhHHHHHHHHhhChHHHH
Confidence 0011111111110000000 000000000000 000000001111000 0124567899999999988777888888
Q ss_pred HHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc---cCChhhHhHHHHHHHHHhc
Q 001796 901 EAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT---WGTDSLKEEALGFLEKVFM 955 (1012)
Q Consensus 901 ~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~---s~~~~~~~~a~~aL~~l~~ 955 (1012)
+-+..|..++.- .+.+.+.+...|.++.|+.++. +++...-.++..+++-++.
T Consensus 927 efl~lleSlaRa--spfnaelltS~gcvellleIiypflsgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 927 EFLNLLESLARA--SPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred HHHHHHHHHhhc--CCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhh
Confidence 888888888864 4677777888888888888765 5555555566666655554
No 214
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.80 E-value=1.3 Score=43.78 Aligned_cols=148 Identities=18% Similarity=0.191 Sum_probs=95.9
Q ss_pred ChHHHHHhhcC-CCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHH
Q 001796 724 RLEALVGFLEN-DAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQ 802 (1012)
Q Consensus 724 ~i~~Lv~lL~~-~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~ 802 (1012)
.+..++..|.. ..+++++..+.-++..+- +..+.-...-+-+.+-.++..++.+....++.++..+--. .++..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l----~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~-~~dv~ 78 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL----DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPG-PPDVG 78 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTT-THHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCC-CHHHH
Confidence 34555565543 446678888888777762 1122222223344444556666666778888888887544 56766
Q ss_pred HHHH-HcCCHHHHHHHHh--cCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhh
Q 001796 803 RNVV-ERGVYPLLVNLLQ--IGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLL 879 (1012)
Q Consensus 803 ~~i~-~~g~i~~Lv~lL~--s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv 879 (1012)
..+. ..|.++.++.+.. ..+..++..++.+|..- |.. ++....+
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA--------------------------c~d-------~~~r~~I 125 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAA--------------------------CID-------KSCRTFI 125 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH--------------------------TTS-------HHHHHCC
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH--------------------------Hcc-------HHHHHHH
Confidence 5555 5788999999999 67888889999988765 322 2224556
Q ss_pred hcCcchHHHHhcc-CCChH-HHHHHHHHHHHH
Q 001796 880 KANALPHLVKLLQ-GRVHA-TAYEAIQTLSTL 909 (1012)
Q Consensus 880 ~~gai~~Lv~lL~-~~~~~-v~~~Al~aL~~L 909 (1012)
...+++.|-+++. ++++. ++..|+.+|+.|
T Consensus 126 ~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 126 SKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 6788999999995 45555 777788877653
No 215
>PRK14707 hypothetical protein; Provisional
Probab=90.44 E-value=84 Score=42.82 Aligned_cols=431 Identities=16% Similarity=0.058 Sum_probs=193.8
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHHhccccchhhhhhhcCCcccccccccc--CChhhHHHHHHHHHHhhccCCchHH
Q 001796 376 DIIISILGS-SHNKDVKMKILITLKQLVKGHARNKEKVIDYGGWDHIVPCLGR--DPSISLAAVKLLYELMQDRSGWNVA 452 (1012)
Q Consensus 376 ~~Lv~lL~~-~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~--~~~~~~~A~~~L~~ls~~~~~~~~~ 452 (1012)
..+++-++. .++.+-+..+......++.++ ..+..+ +..+|..++.-++. |...+++|+..|.....+++..
T Consensus 166 ~lllNafSKw~~~~~c~~aa~~la~~~~~~d-~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l--- 240 (2710)
T PRK14707 166 SLALNAFSKWSDNPDCQAVAPRFAALVASDD-RLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRL--- 240 (2710)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhcCCh-hhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH---
Confidence 344444432 345556555555555555543 333322 44556667777765 6677888888877765554321
Q ss_pred hhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHH-HhhcCChhhHHHHhhcCCcHHHHHHHhc-CChHHHHHHHHHHH-
Q 001796 453 VCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQ-QLFDVDEENFCRAAKSGWYKPLIDRIIQ-GAESSRILMMKALL- 529 (1012)
Q Consensus 453 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~-~La~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~- 529 (1012)
+.-+...|+-..|-.+-+=++...-.+|+..|. .++ .+..-+..+ ++-.+.-.+.-|+. .+..+-..|+..|.
T Consensus 241 --~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~ 316 (2710)
T PRK14707 241 --RNELKPQELGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAE 316 (2710)
T ss_pred --HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 233333444444444445455555555555554 443 333333333 33333344444433 33444444554444
Q ss_pred hcccccchhhHhhhcCChHHHHhhh-cCCC-hhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHH
Q 001796 530 SMELVDSNLELLGKEGIIPPLLGLV-GSGN-FQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVK 607 (1012)
Q Consensus 530 ~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~ 607 (1012)
.|..+.+-+..+ +.-.+...++.| +.++ ..+.+.|...-..|+.+++-+..+-.. ++..++.-+..-++. ..
T Consensus 317 rl~~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q-~~a~~lNalsKWp~~----~~ 390 (2710)
T PRK14707 317 RLADDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQ-GVSSVLNALSKWPDT----PV 390 (2710)
T ss_pred HHhccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchh-HHHHHHhhhhcCCCc----hH
Confidence 455554444333 333334444444 3444 556666666666677766666655433 355555555544333 23
Q ss_pred HHHHHHHhhc----cC-ccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcH
Q 001796 608 CSEILEKLSS----DG-IKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGV 682 (1012)
Q Consensus 608 a~~~L~nLa~----~~-~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v 682 (1012)
|..+-..|+. +. ..... ....|.+.+.-++.--+. .+...++.+|..-..+... .++.+--.++.
T Consensus 391 c~~aa~~LA~~l~~d~~l~~~~--------~~Q~van~lnalsKWPd~-~~C~~aa~~lA~~la~d~~-l~~~~~p~~va 460 (2710)
T PRK14707 391 CAAAASALAEHVVDDLELRKGL--------DPQGVSNALNALAKWPDL-PICGQAVSALAGRLAHDTE-LCKALDPINVT 460 (2710)
T ss_pred HHHHHHHHHHHhccChhhhhhc--------chhhHHHHHHHhhcCCcc-hhHHHHHHHHHHHHhccHH-HHhhcChHHHH
Confidence 3333334443 11 00001 111233333333332222 2334444444332222222 34444333322
Q ss_pred HHHHHhhcCCCHHHHHHHH-HHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHH
Q 001796 683 SLILSLLDDTDSEVREIAI-NLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMK 761 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~-~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~ 761 (1012)
..|--+-+-++..+-..+. .+...|+++ ++ ....+--..+...|-.+=+.++...-..++.++-..+.. .....+.
T Consensus 461 ~~LnalSKWPd~p~c~~aa~~La~~l~~~-~~-l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~~l~~~ 537 (2710)
T PRK14707 461 QALDALSKWPDTPICGQTASALAARLAHE-RR-LRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVD-ELQLRKA 537 (2710)
T ss_pred HHHHHhhcCCCChhHHHHHHHHHHHhccc-HH-HHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-chhhhhh
Confidence 2232222334444433333 344456554 21 222221112222222222344333344445555555554 2223333
Q ss_pred HHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHhh
Q 001796 762 LIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI--GSITAKARAAALIGTL 836 (1012)
Q Consensus 762 l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s--~~~~vk~~Aa~aL~nL 836 (1012)
+-..++...+-.+-++.....-+.++..|..+... ++..+..+. .-.|+.+++.|+. .++..+..+.+.-..+
T Consensus 538 ~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~-~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l 612 (2710)
T PRK14707 538 FDAHQVVNTLKALSKWPDKQLCAVAASGLAERLAD-EPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERL 612 (2710)
T ss_pred hhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhc-chhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHh
Confidence 33344444444455566556666666666665443 455544443 3456777776653 2344444444444444
No 216
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.20 E-value=2.2 Score=45.38 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=67.9
Q ss_pred hhhhhcCcchHHHHhcc-CCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhcc--CChhhHhHHHHHHHH
Q 001796 876 FCLLKANALPHLVKLLQ-GRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTW--GTDSLKEEALGFLEK 952 (1012)
Q Consensus 876 ~~lv~~gai~~Lv~lL~-~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s--~~~~~~~~a~~aL~~ 952 (1012)
..+-+..++..|+++|. .....++.+++.+|..+..| .+.+.+.+.+.+|+..++.++++ .+.+++-++...|.-
T Consensus 127 ~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld--~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 127 KLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD--SPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred HHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc--ChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHH
Confidence 55567899999999995 45678899999999999887 78999999999999999999984 467888999998887
Q ss_pred HhchH
Q 001796 953 VFMSK 957 (1012)
Q Consensus 953 l~~~~ 957 (1012)
+...+
T Consensus 205 yl~~E 209 (257)
T PF08045_consen 205 YLMPE 209 (257)
T ss_pred HHccc
Confidence 77653
No 217
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=0.21 Score=54.89 Aligned_cols=43 Identities=19% Similarity=0.272 Sum_probs=38.4
Q ss_pred ceecccccccCCC---ceecCCCccccHHHHHHHHhcCC--CCCCCCC
Q 001796 261 AFKCRITGTVMMD---PVSLYTGTTCERAAIEAWLDRRE--KTDPETG 303 (1012)
Q Consensus 261 ~~~cpi~~~~m~d---Pv~~~~g~t~~r~~i~~~~~~~~--~~cp~~~ 303 (1012)
-|.|||..+-=.| |+.+.|||..+|.+|-+-...|. ..||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3899999998877 99999999999999999998877 5799983
No 218
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=90.10 E-value=6.4 Score=45.40 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=112.8
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCC--ChhHHHHHHHHHHHhhccCccceec
Q 001796 548 PPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHV--PSNIIVKCSEILEKLSSDGIKFLVD 625 (1012)
Q Consensus 548 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~~L~nLa~~~~~~~~~ 625 (1012)
..+.+.+.+++...+..+...|..++.++.-...++...++..|..++.++.. ...+...++.++..|-.-|.-...
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~- 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE- 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee-
Confidence 34566777888888888999999999999999999999999999999998865 223334444554444432211000
Q ss_pred ccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 001796 626 EKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLF 705 (1012)
Q Consensus 626 ~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~ 705 (1012)
.....+|.....+.....-+..+-..|+..|-++...+.. .++.+.+.--++.|+..++..+..++..|..++.
T Consensus 165 -----~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~-~~~~v~eev~i~~li~hlq~~n~~i~~~aial~n 238 (713)
T KOG2999|consen 165 -----SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT-LRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLN 238 (713)
T ss_pred -----ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH-HHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHH
Confidence 0123455555555543222223667888888888776654 4566777777999999999999999999988888
Q ss_pred HhccCCCcchHHh
Q 001796 706 LFSHHEPEGVVEY 718 (1012)
Q Consensus 706 ~ls~~~~~~~~~~ 718 (1012)
.+-...++.....
T Consensus 239 al~~~a~~~~R~~ 251 (713)
T KOG2999|consen 239 ALFRKAPDDKRFE 251 (713)
T ss_pred HHHhhCChHHHHH
Confidence 7766555554433
No 219
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.97 E-value=13 Score=42.36 Aligned_cols=227 Identities=18% Similarity=0.128 Sum_probs=126.3
Q ss_pred CChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcC-CCh-hHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHH
Q 001796 516 GAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGS-GNF-QSKELSLSVLVKLSGCSKNRELISAAGGIPQVLE 593 (1012)
Q Consensus 516 ~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~ 593 (1012)
.+..+|..++.-|..-+.++..+..+.+.|.+..+++.+.+ ++. ..--.++.+++-++.+..+-..+.+.+.+..++.
T Consensus 34 ~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll~~ 113 (361)
T PF07814_consen 34 SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLLLK 113 (361)
T ss_pred CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHHHH
Confidence 35568888888888888899999999999999999999844 333 3444455556666666555555556666777788
Q ss_pred HhhcC-----CCCh-----hHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhcc-------CCChhhHHH
Q 001796 594 LMFSS-----HVPS-----NIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNF-------NSSYNVRKP 656 (1012)
Q Consensus 594 lL~~~-----~~~~-----~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~-------~~~~~~~~~ 656 (1012)
++.-. .... .........+...+. .....+ .....-+.-
T Consensus 114 Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~lsp~~l 169 (361)
T PF07814_consen 114 LLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCK------------------------ELLSSGSSWKSPKPPELSPQTL 169 (361)
T ss_pred HhccccccccccchhhhhhhhhhHHHHHHHHHHH------------------------HHHhccccccccCCcccccccH
Confidence 88711 0000 000111111111111 111000 000112344
Q ss_pred HHHHHHHhc-----------c--CchHHHHHHHHhcCcHHHHHHhhcC----C-------C-----HHHHHHHHHHHHHh
Q 001796 657 ALRALFRIC-----------K--SEAELVKIAVVKANGVSLILSLLDD----T-------D-----SEVREIAINLLFLF 707 (1012)
Q Consensus 657 al~aL~~L~-----------~--~~~~~~~~~i~~~g~v~~Lv~ll~~----~-------~-----~~v~~~a~~~L~~l 707 (1012)
|+.++-.++ . ...+..++.++..||++.+++.+.+ . . ......|+++|.+.
T Consensus 170 all~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~ 249 (361)
T PF07814_consen 170 ALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESV 249 (361)
T ss_pred HHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 444444442 0 0111246778888999999888751 0 1 12445677888887
Q ss_pred ccCCCcchHHhhhc-CCChHHHHH-hhcCC--CchHHHHHHHHHHhccCCCCHHHHHHHHhhc
Q 001796 708 SHHEPEGVVEYLLK-PKRLEALVG-FLEND--AKHDVQMAAAGLLANLPKSELSLTMKLIELD 766 (1012)
Q Consensus 708 s~~~~~~~~~~l~~-~~~i~~Lv~-lL~~~--~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g 766 (1012)
+....++....+.- .+.++.+.. ++... .....+..++.++.|++.+++..+..+...+
T Consensus 250 T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 250 TFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 76544443332221 223333332 22222 1233457799999999999977666666544
No 220
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.93 E-value=16 Score=40.59 Aligned_cols=190 Identities=22% Similarity=0.205 Sum_probs=102.9
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHh--cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC--C
Q 001796 637 VTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVK--ANGVSLILSLLDDTDSEVREIAINLLFLFSHHE--P 712 (1012)
Q Consensus 637 v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~--~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~--~ 712 (1012)
+...+..+.... ...|+.++..+.++..+.-- ...+.. .-.+..+...++.++.+-+..|+.++..++-.. +
T Consensus 45 L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 45 LKEAIDLLTEKS--SSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 333444444333 45889999999888653211 122211 123566777777777666777777777766442 2
Q ss_pred cchHHhhhcCCChHHHHHhhcCCCc-hHHHHHHH---HHHhccCCCCHHHHHHHHhhccHHHHH--HHhcCC--------
Q 001796 713 EGVVEYLLKPKRLEALVGFLENDAK-HDVQMAAA---GLLANLPKSELSLTMKLIELDGLNAII--NILKSG-------- 778 (1012)
Q Consensus 713 ~~~~~~l~~~~~i~~Lv~lL~~~~~-~~~~~~Aa---~aL~nL~~~~~~~~~~l~~~g~i~~Lv--~lL~~~-------- 778 (1012)
+....++ ....|.|..++..++. ...+..++ +++.-++..+.+-....++ .+..+. ...+.+
T Consensus 121 ~~~~ei~--~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 121 EDSEEIF--EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred ccHHHHH--HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccC
Confidence 3333322 3567788888866533 34444444 4444444444432221111 122111 112211
Q ss_pred --ChhHHHHHHHHHHhccCC-CCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 779 --TMEAKENALSALFRFTDP-TNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 779 --~~~~~~~a~~aL~~Ls~~-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
++.+...|+.+..-|... +....... -...+|.|+.+|.+.+.+||..|..+|+-|
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~--~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDL--LEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 234566665444433322 12233322 234699999999999999999999999887
No 221
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=89.89 E-value=15 Score=41.73 Aligned_cols=129 Identities=16% Similarity=0.108 Sum_probs=90.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCC---hhhHHHHhhcCCcHHHHHHHhcCC------h-HHHHHHHHHHHhcccccc
Q 001796 467 LVTLIKGPVRESAECAEKILQQLFDVD---EENFCRAAKSGWYKPLIDRIIQGA------E-SSRILMMKALLSMELVDS 536 (1012)
Q Consensus 467 Lv~lL~~~~~~~~~~A~~~L~~La~~~---~~~~~~i~~~g~i~~Lv~lL~~~~------~-~~~~~a~~aL~~Ls~~~~ 536 (1012)
+..++...+.+.+..|.-....++..+ ..+|+.+.++=+++.+=++|.+++ + -.+.-++..|.-+|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 445555555566666655555665433 346788889989999999997542 2 234456666666666554
Q ss_pred h--hhHhhhcCChHHHHhhhcCC-Ch------hHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhc
Q 001796 537 N--LELLGKEGIIPPLLGLVGSG-NF------QSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFS 597 (1012)
Q Consensus 537 ~--~~~i~~~g~i~~Lv~lL~~~-~~------~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~ 597 (1012)
- ...++ ..||.|...+..+ |+ .+.+.+-.+|..+++.+.+...++..|+++.+.++-.-
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 3 22232 5689999988643 22 38899999999999999999999999999999866543
No 222
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=89.76 E-value=0.59 Score=52.43 Aligned_cols=186 Identities=14% Similarity=0.089 Sum_probs=106.8
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCC-----CCHHHHHHHHHcCCHHHH
Q 001796 740 VQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDP-----TNLEAQRNVVERGVYPLL 814 (1012)
Q Consensus 740 ~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~-----~~~~~~~~i~~~g~i~~L 814 (1012)
+..+|..++.-+..+..-......-..+...+...+.+..-..++++++++.|++.. .+++.+..-...-.+..+
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~ 486 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKM 486 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 445566666666554433233333444555555666655667899999999999843 222222111111122333
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHh-
Q 001796 815 VNLLQ---IGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKL- 890 (1012)
Q Consensus 815 v~lL~---s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~l- 890 (1012)
+++-. ....+|+.+|..+|+|++.--+.+. . | .+...+.|.+..++..
T Consensus 487 ~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~----------------------~--~----~~~e~~~~~~~~l~~~v 538 (728)
T KOG4535|consen 487 LRSAIEASADKDKVKSNAVRALGNLLQFLQPIE----------------------K--P----TFAEIIEESIQALISTV 538 (728)
T ss_pred HHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhh----------------------h--c----cHHHHHHHHHHhcccce
Confidence 32222 2256799999999999854221110 0 1 1344445666555544
Q ss_pred ccCCChHHHHHHHHHHHHHhhccchhhh--hHHhhhcCCchHHHHHhc-cCChhhHhHHHHHHHHHhch
Q 001796 891 LQGRVHATAYEAIQTLSTLVQEGCQQRG--VNVLHQEEAIKPTLEILT-WGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 891 L~~~~~~v~~~Al~aL~~L~~~~~~~~~--~~~i~~~~~v~~L~~ll~-s~~~~~~~~a~~aL~~l~~~ 956 (1012)
+-...-.|+-.|+.|+.||..+ +.. ..+=......+.|..++. ..|-.+|.+|+.+|..-..-
T Consensus 539 ~~~~~~kV~WNaCya~gNLfkn---~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 539 LTEAAMKVRWNACYAMGNLFKN---PALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred ecccccccchHHHHHHHHhhcC---ccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 3335678999999999999985 221 111112234566777666 56888999999998766543
No 223
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.55 E-value=10 Score=45.56 Aligned_cols=242 Identities=14% Similarity=0.209 Sum_probs=121.7
Q ss_pred hccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhc-CChHHHHHHHHHHHhcccccch
Q 001796 459 QQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQ-GAESSRILMMKALLSMELVDSN 537 (1012)
Q Consensus 459 ~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~ 537 (1012)
.....|..+..+|.+.+..++..|+..|..|+. ++......+ ..+++++.. .+..++.-...-|..+. ..+
T Consensus 240 ~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~Aa-----~~~i~l~~kesdnnvklIvldrl~~l~--~~~ 311 (948)
T KOG1058|consen 240 EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKAAA-----STYIDLLVKESDNNVKLIVLDRLSELK--ALH 311 (948)
T ss_pred HhhHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHHHH-----HHHHHHHHhccCcchhhhhHHHHHHHh--hhh
Confidence 344677888888888888888888888888852 222211111 223333322 12223332222333222 111
Q ss_pred hhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 001796 538 LELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS 617 (1012)
Q Consensus 538 ~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~ 617 (1012)
+..+ .|.+--++++|+++|-+++..++.....|+.+.. +.-++.+|+..-....
T Consensus 312 ~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~-------------- 365 (948)
T KOG1058|consen 312 EKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTH-------------- 365 (948)
T ss_pred HHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhcc--------------
Confidence 1111 2344455566666777777777766666655432 3333333332100000
Q ss_pred cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhcc-CchHHHHHHHHhcCcHHHHHHhhcCCCHHH
Q 001796 618 DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICK-SEAELVKIAVVKANGVSLILSLLDDTDSEV 696 (1012)
Q Consensus 618 ~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~-~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v 696 (1012)
+ .--+ .....|+-.+.++...+. +++ +.+.+|+.|++++.+.++..
T Consensus 366 -~--~e~d-----------------------~~~~yRqlLiktih~cav~Fp~-------~aatvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 366 -N--EESD-----------------------DNGKYRQLLIKTIHACAVKFPE-------VAATVVSLLLDFISDSNEAA 412 (948)
T ss_pred -c--cccc-----------------------cchHHHHHHHHHHHHHhhcChH-------HHHHHHHHHHHHhccCCHHH
Confidence 0 0000 112256666677776655 343 23345688999999888765
Q ss_pred HHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHH--HHH--hhccHHHHH
Q 001796 697 REIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTM--KLI--ELDGLNAII 772 (1012)
Q Consensus 697 ~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~--~l~--~~g~i~~Lv 772 (1012)
-...+..++..-...|.-+ ...+..|+.-+..-...+.-..|+|+++.-+....+... .++ .-|-+|.+.
T Consensus 413 as~vl~FvrE~iek~p~Lr------~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEvp~~~ 486 (948)
T KOG1058|consen 413 ASDVLMFVREAIEKFPNLR------ASIIEKLLETFPQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEVPIVC 486 (948)
T ss_pred HHHHHHHHHHHHHhCchHH------HHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhccccceeh
Confidence 5555544444333333322 223455555443222335667788888887776664433 222 246666544
Q ss_pred H
Q 001796 773 N 773 (1012)
Q Consensus 773 ~ 773 (1012)
.
T Consensus 487 s 487 (948)
T KOG1058|consen 487 S 487 (948)
T ss_pred H
Confidence 3
No 224
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.44 E-value=23 Score=44.15 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=101.7
Q ss_pred HHhhcCCcHHHHHHHhcC-----ChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhc----CCC----hhHHHHH
Q 001796 499 RAAKSGWYKPLIDRIIQG-----AESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVG----SGN----FQSKELS 565 (1012)
Q Consensus 499 ~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a 565 (1012)
.+.+.|++..+++++.+- ..+.-...+..|...+....||..+.+.|+++.|++.|. .+. .++.+.-
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 446789999999988752 223333445556666668999999999999999999773 323 4566666
Q ss_pred HHHHHHhcCCCch---H--HHHHHcC-----C---hHHHHHHhhcCC--CChhHHHHHHHHHHHhhccCccceecccCCc
Q 001796 566 LSVLVKLSGCSKN---R--ELISAAG-----G---IPQVLELMFSSH--VPSNIIVKCSEILEKLSSDGIKFLVDEKGNR 630 (1012)
Q Consensus 566 ~~~L~~Ls~~~~~---~--~~i~~~g-----~---i~~Lv~lL~~~~--~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~ 630 (1012)
+.++..|...... . ....... . +..+++.+.+.. ....+....+.+|-+|+.....
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e--------- 262 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEE--------- 262 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHH---------
Confidence 6666555432111 0 0001111 2 555666666542 2344556677777777751100
Q ss_pred cchhHHHHHHHHHHhccCCC---hhhHHHHHHHHHHhcc-----CchHHHHHHHHhcCcHHHHHHhhcC
Q 001796 631 LELEPIVTNLLTLQQNFNSS---YNVRKPALRALFRICK-----SEAELVKIAVVKANGVSLILSLLDD 691 (1012)
Q Consensus 631 l~~~~~v~~Ll~ll~~~~~~---~~~~~~al~aL~~L~~-----~~~~~~~~~i~~~g~v~~Lv~ll~~ 691 (1012)
.....+..+-..++-..-+ ..--...+..++.++. ..++.+++.+++.|.+...+.++..
T Consensus 263 -~m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 263 -KMDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLK 330 (802)
T ss_pred -HHHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Confidence 0111222222222111100 0011233555555543 2334589999999999988888754
No 225
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.18 E-value=0.65 Score=42.94 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=59.5
Q ss_pred ChHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcc
Q 001796 462 SGILFLVTLIK-GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSME 532 (1012)
Q Consensus 462 g~i~~Lv~lL~-~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls 532 (1012)
-.+..|+.+|. +.|+.+..-|+--|..++...|..|..+.+.|+=..+.+++.++++++|.+|+.++..+-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46788889994 456677888899999999888999999999999999999999999999999999987653
No 226
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.16 E-value=50 Score=38.40 Aligned_cols=341 Identities=17% Similarity=0.150 Sum_probs=180.9
Q ss_pred HHHHHHhcCCCH---HHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC-ChHHHHHHHHHHHhccccc-c---
Q 001796 465 LFLVTLIKGPVR---ESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG-AESSRILMMKALLSMELVD-S--- 536 (1012)
Q Consensus 465 ~~Lv~lL~~~~~---~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~-~--- 536 (1012)
|.+...|.+.+. ...+....+|..+|... .....+.. ..+..|-.....+ +.+.-...+.+|.++.... +
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~-~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSP-QILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCCh-hHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 556666765444 56778888888887432 22222211 3333333333322 3344455566666654421 1
Q ss_pred --hhhHhhhcCChHHHHhhhcCC-------ChhHHHHHHHHHHHhcC--CCchHHHHHHcCChHHHHHHhh---------
Q 001796 537 --NLELLGKEGIIPPLLGLVGSG-------NFQSKELSLSVLVKLSG--CSKNRELISAAGGIPQVLELMF--------- 596 (1012)
Q Consensus 537 --~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~--------- 596 (1012)
......+...+|.+.++.... ++.+...+..++..+.. ..+.+..+ +..+..+..
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCCCC
Confidence 223344555888888876321 13455555555555553 22333333 223333332
Q ss_pred -cCC----CChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccC-chH
Q 001796 597 -SSH----VPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKS-EAE 670 (1012)
Q Consensus 597 -~~~----~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~-~~~ 670 (1012)
... ...........++..+-.+. .. -.....+..++.+..+..+ +..+..++.++..+... +++
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~---~~------~~~~~ll~~l~~~~~~~~~-~~~~~~~~~~la~LvNK~~~~ 224 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDV---SL------PDLEELLQSLLNLALSSED-EFSRLAALQLLASLVNKWPDD 224 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCccc---Cc------cCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCCh
Confidence 111 01111112222222222111 00 1234578888888877665 55788888888887653 222
Q ss_pred HHHHHHHhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHhc-----cCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHH
Q 001796 671 LVKIAVVKANGVSLILSLL-DDTDSEVREIAINLLFLFS-----HHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAA 744 (1012)
Q Consensus 671 ~~~~~i~~~g~v~~Lv~ll-~~~~~~v~~~a~~~L~~ls-----~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~A 744 (1012)
..-. ..+..+.... .......+..+..++.+++ +.++. ....+..|+++|.++ +....|
T Consensus 225 ~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~-------~~~~~~~L~~lL~~~---~~g~~a 289 (415)
T PF12460_consen 225 DDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPL-------ATELLDKLLELLSSP---ELGQQA 289 (415)
T ss_pred hhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCch-------HHHHHHHHHHHhCCh---hhHHHH
Confidence 1111 1122333323 2334445555555444433 22111 123467778888763 556666
Q ss_pred HHHHhccCCCCHHH--------HHHHHhh----ccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHH
Q 001796 745 AGLLANLPKSELSL--------TMKLIEL----DGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYP 812 (1012)
Q Consensus 745 a~aL~nL~~~~~~~--------~~~l~~~----g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~ 812 (1012)
+.++.-|..+.++. .+.+.+. -.+|.|++..+..+...|.+-..+|.++..+ -|...-.-.-...+|
T Consensus 290 A~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~-vP~~vl~~~l~~LlP 368 (415)
T PF12460_consen 290 AKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKN-VPKSVLLPELPTLLP 368 (415)
T ss_pred HHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh-CCHHHHHHHHHHHHH
Confidence 77676666642322 2233332 3577888888777777888888899988775 343111111245799
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 813 LLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 813 ~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
.|++-|...+++++..+...|..+-.
T Consensus 369 LLlqsL~~~~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 369 LLLQSLSLPDADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998844
No 227
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.94 E-value=0.26 Score=53.36 Aligned_cols=53 Identities=32% Similarity=0.484 Sum_probs=48.7
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCcc
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRS 313 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~ 313 (1012)
..-.|.+++-+|.|||-...|..||-..|--|+.. +.+-|.||+++...+|++
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 35689999999999999999999999999999987 788999999999888776
No 228
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=88.94 E-value=0.4 Score=37.12 Aligned_cols=45 Identities=9% Similarity=0.014 Sum_probs=24.8
Q ss_pred ceecccccccCCCceec-CCCc--cccHHHHHHHHh-cCCCCCCCCCcc
Q 001796 261 AFKCRITGTVMMDPVSL-YTGT--TCERAAIEAWLD-RREKTDPETGVV 305 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~-~~g~--t~~r~~i~~~~~-~~~~~cp~~~~~ 305 (1012)
.+.||||...|+-||-- .|.| .||-...-.... .+.-.||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999987 7766 588755444333 444579999864
No 229
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.93 E-value=0.17 Score=55.45 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=46.7
Q ss_pred ceecccccccCCCc-----eecCCCccccHHHHHHHHhcC-CCCCCCCCcccCCCCCccCHHHHHH
Q 001796 261 AFKCRITGTVMMDP-----VSLYTGTTCERAAIEAWLDRR-EKTDPETGVVLEDTSLRSNSPLRQS 320 (1012)
Q Consensus 261 ~~~cpi~~~~m~dP-----v~~~~g~t~~r~~i~~~~~~~-~~~cp~~~~~l~~~~l~~n~~l~~~ 320 (1012)
...||||++=..-| |++.|||-|--+||++|+-+- ...||.|.-+-....+.|-+++|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 46799999988777 567999999999999999532 3479999877666677777666543
No 230
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=88.32 E-value=0.12 Score=43.15 Aligned_cols=47 Identities=15% Similarity=0.317 Sum_probs=23.2
Q ss_pred ceecccccccCC-C---ceec----CCCccccHHHHHHHHhc--CC--------CCCCCCCcccC
Q 001796 261 AFKCRITGTVMM-D---PVSL----YTGTTCERAAIEAWLDR--RE--------KTDPETGVVLE 307 (1012)
Q Consensus 261 ~~~cpi~~~~m~-d---Pv~~----~~g~t~~r~~i~~~~~~--~~--------~~cp~~~~~l~ 307 (1012)
+..|+||..... + |+++ .||++|=..|+.+||.. +. .+||.|+++++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 567999998754 2 5555 57899999999999973 11 25999988764
No 231
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=87.92 E-value=1.7 Score=38.96 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=50.6
Q ss_pred ccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Q 001796 766 DGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAAL 832 (1012)
Q Consensus 766 g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~a 832 (1012)
-.+++++..+.+.+.++|..|+.+|.+++.....+.- -.-..+.+.|.+++.+.++.||..|...
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l--~~f~~IF~~L~kl~~D~d~~Vr~~a~~L 91 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL--PYFNEIFDALCKLSADPDENVRSAAELL 91 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCchhHHHHHHHH
Confidence 4689999999999999999999999999875322211 1234678889999999999998877443
No 232
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.85 E-value=0.43 Score=48.89 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=40.9
Q ss_pred CceecccccccCCCc----eecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCCC
Q 001796 260 NAFKCRITGTVMMDP----VSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTSL 311 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dP----v~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l 311 (1012)
..|.|||++=.|.+- ++.+|||.|.-++.++.- ..+||+|++.....++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDV 162 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCe
Confidence 479999999999985 345999999998887655 4689999999987764
No 233
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=87.75 E-value=12 Score=41.76 Aligned_cols=200 Identities=12% Similarity=0.163 Sum_probs=135.8
Q ss_pred cCchHHHHHHhccCCCHHHHHHHHHHHHHHhccccchhh-hhhhc--CCccccccccc---cCChhhHHHHHHHHHHhhc
Q 001796 372 GGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKE-KVIDY--GGWDHIVPCLG---RDPSISLAAVKLLYELMQD 445 (1012)
Q Consensus 372 ~g~v~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~~~~~~-~i~~~--g~i~~lv~lL~---~~~~~~~~A~~~L~~ls~~ 445 (1012)
.+....|+..|.. -+-+.|..++.....+.....+++. -.++. .-.|.++..|- .+++.--.+-..|++..++
T Consensus 75 ~dll~~Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~ 153 (335)
T PF08569_consen 75 SDLLYLLIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH 153 (335)
T ss_dssp HTHHHHHHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS
T ss_pred hCHHHHHHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh
Confidence 4666777777754 5778888888888877766655543 12221 22255555552 2345556777788888876
Q ss_pred cCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcC---CcHHHHHHHhcCChHHHH
Q 001796 446 RSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSG---WYKPLIDRIIQGAESSRI 522 (1012)
Q Consensus 446 ~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g---~i~~Lv~lL~~~~~~~~~ 522 (1012)
+ .+++.+.. ...+..+....+.++-++...|..++..+-..+........... .+...-.+|.+++--+|+
T Consensus 154 e-----~l~~~iL~-~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkr 227 (335)
T PF08569_consen 154 E-----SLAKIILY-SECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKR 227 (335)
T ss_dssp H-----HHHHHHHT-SGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHH
T ss_pred H-----HHHHHHhC-cHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeeh
Confidence 3 44555544 56778888999999999999999999987766665544444433 456677888999999999
Q ss_pred HHHHHHHhcccccchhhHhh----hcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCch
Q 001796 523 LMMKALLSMELVDSNLELLG----KEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKN 578 (1012)
Q Consensus 523 ~a~~aL~~Ls~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 578 (1012)
.++..|+.+-.+..|...+. +..-+..++.+|++....++-.|.-++.-...+|..
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K 287 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK 287 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence 99999999999888855433 455677888899998889999999888877666543
No 234
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=87.60 E-value=1.3 Score=43.84 Aligned_cols=136 Identities=23% Similarity=0.136 Sum_probs=83.8
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-ccchh-hHhhhcCChHHHH
Q 001796 474 PVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL-VDSNL-ELLGKEGIIPPLL 551 (1012)
Q Consensus 474 ~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~-~~i~~~g~i~~Lv 551 (1012)
...+++..|.-++..+- +..+.... .-+-+.+-.++..++.+....+..++..+-. .++-. ..+...|.++.++
T Consensus 17 ~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 17 QPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 34567777777666552 22222221 1122233334444555577778888877655 33444 4445799999999
Q ss_pred hhhc--CCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHH
Q 001796 552 GLVG--SGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEK 614 (1012)
Q Consensus 552 ~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~n 614 (1012)
.++. +.+...+..++.+|..=|.+...|..|.+.| ++-|-++++....+..++..|+-+|..
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHHHhc
Confidence 9998 6778888888888888777766666666555 888888887654443244556555543
No 235
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=87.51 E-value=13 Score=42.57 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=93.1
Q ss_pred hhhhhccChHHHHHHHhcCCC---HHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHh-cC---ChHHHHHHHHH
Q 001796 455 RKLSQQCSGILFLVTLIKGPV---RESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRII-QG---AESSRILMMKA 527 (1012)
Q Consensus 455 ~~i~~~~g~i~~Lv~lL~~~~---~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~-~~---~~~~~~~a~~a 527 (1012)
|.++.+......|..++++.. ..+-..|+.++..+-..+|..-..+.++|.++.+++.+. .+ +.++-...-.+
T Consensus 99 rnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~ 178 (379)
T PF06025_consen 99 RNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNV 178 (379)
T ss_pred ccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 444443556677777777654 357888899999888888889999999999999999998 55 34455555568
Q ss_pred HHhcccccchhhHhhhcCChHHHHhhhcCCCh-------hHHHHHHHHHHHhcCC-CchHHHHHH
Q 001796 528 LLSMELVDSNLELLGKEGIIPPLLGLVGSGNF-------QSKELSLSVLVKLSGC-SKNRELISA 584 (1012)
Q Consensus 528 L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~-------~~~~~a~~~L~~Ls~~-~~~~~~i~~ 584 (1012)
|..||.+......+.+.++++.+++++.+.+- +....--..+-.|..+ |.-|..+++
T Consensus 179 l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 179 LSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88899999999999999999999999876431 2222333445555554 333444443
No 236
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.48 E-value=1.6 Score=44.17 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHH
Q 001796 822 SITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYE 901 (1012)
Q Consensus 822 ~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~ 901 (1012)
++.+|..+..+++.| |..+.+. + ...++.+...|.++++.|+..
T Consensus 1 ~~~vR~n~i~~l~DL--------------------------~~r~~~~---------v-e~~~~~l~~~L~D~~~~VR~~ 44 (178)
T PF12717_consen 1 DPSVRNNAIIALGDL--------------------------CIRYPNL---------V-EPYLPNLYKCLRDEDPLVRKT 44 (178)
T ss_pred CHHHHHHHHHHHHHH--------------------------HHhCcHH---------H-HhHHHHHHHHHCCCCHHHHHH
Confidence 477899999999998 4333331 1 456788899999999999999
Q ss_pred HHHHHHHHhhccchhhhhHHhhhcCC-chHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 902 AIQTLSTLVQEGCQQRGVNVLHQEEA-IKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 902 Al~aL~~L~~~~~~~~~~~~i~~~~~-v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
|+.+|..|...+ .+.-.|- +..++.++.+.+++++..|...+..+...
T Consensus 45 al~~Ls~Li~~d-------~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 45 ALLVLSHLILED-------MIKVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHcC-------ceeehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 999999998741 1111122 36777888899999999999999998875
No 237
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=87.24 E-value=1.6 Score=44.14 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHH
Q 001796 738 HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNL 817 (1012)
Q Consensus 738 ~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~l 817 (1012)
+.++.+++.+++-|+..-++... ..+|.+...|+++++.+|+.|+.+|.+|...+--.+ +...+..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHHH
Confidence 46788888899988876554322 348889999999999999999999999977532222 12234777888
Q ss_pred HhcCCHHHHHHHHHHHHhhcc
Q 001796 818 LQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 818 L~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
+.+.++.++..|...+..++.
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLK 92 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999854
No 238
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=0.17 Score=52.18 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=43.0
Q ss_pred CceecccccccCCCce----------ecCCCccccHHHHHHHHhcCC-CCCCCCCcccCCCCCc
Q 001796 260 NAFKCRITGTVMMDPV----------SLYTGTTCERAAIEAWLDRRE-KTDPETGVVLEDTSLR 312 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv----------~~~~g~t~~r~~i~~~~~~~~-~~cp~~~~~l~~~~l~ 312 (1012)
++-.|-+|+.=+-+-| .++|+|.|---||.-|.--|. .|||.|+++.....+.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmf 286 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMF 286 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhc
Confidence 6788999998777666 789999999999999987654 5999999876544333
No 239
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.68 E-value=0.87 Score=31.18 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=25.0
Q ss_pred hHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 547 IPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 547 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
+|.+++++.++++++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999874
No 240
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=4.4 Score=46.74 Aligned_cols=129 Identities=20% Similarity=0.111 Sum_probs=91.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHH
Q 001796 684 LILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLI 763 (1012)
Q Consensus 684 ~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~ 763 (1012)
.+-+++.+.++-+|...+-.+...-.. . ...+++..|+..--+..+++++.+|+.+|+-.+..+++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~G--T------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------ 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVG--T------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------ 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhc--C------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc------
Confidence 344566666777776665444332111 1 12466777777644445789999999999999887775
Q ss_pred hhccHHHHHHHhc-CCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 764 ELDGLNAIINILK-SGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 764 ~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
.++..+++|. +.++.+|...+-+|.-.|.+..... ++..|-.|..+.++-||+.|+.|++.+.
T Consensus 586 ---~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~--------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 586 ---LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV--------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred ---hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH--------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 4777778765 5588899999999998888743332 4566777888888999999999999873
No 241
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=85.66 E-value=2.1 Score=36.01 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcC-CChhHHHHHHHHHHHhcCCCchHHHHHHcC
Q 001796 521 RILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGS-GNFQSKELSLSVLVKLSGCSKNRELISAAG 586 (1012)
Q Consensus 521 ~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g 586 (1012)
.+.+++++++++..+.....+-+.++++.++++... +...+|-.|..+|.-++...++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 457899999999988888888889999999999864 457899999999999999999988887766
No 242
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.90 E-value=6.7 Score=46.85 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=71.2
Q ss_pred ccHHHHHHH-hcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhccCCcCC
Q 001796 766 DGLNAIINI-LKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI-GSITAKARAAALIGTLSTSSPKF 843 (1012)
Q Consensus 766 g~i~~Lv~l-L~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~vk~~Aa~aL~nLs~~~~~l 843 (1012)
++|..|+.. ..+.+.++|+.|+.+|.-++.. +|+ ..|..|.+|.. .++.||--||.||+-.
T Consensus 554 kair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIa------- 616 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPE---------QLPSTVSLLSESYNPHVRYGAAMALGIA------- 616 (929)
T ss_pred hhHHHhhcccccccchHHHHHHHHHheeeEec-Chh---------hchHHHHHHhhhcChhhhhhHHHHHhhh-------
Confidence 356667666 5667899999999999988775 465 46788888874 5899999999999987
Q ss_pred ccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhh
Q 001796 844 TDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQ 911 (1012)
Q Consensus 844 ~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~ 911 (1012)
|.-.++ ..++..|-.+..+...-|+..|+-|++-+..
T Consensus 617 -------------------CAGtG~------------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 617 -------------------CAGTGL------------KEAINLLEPLTSDPVDFVRQGALIALAMIMI 653 (929)
T ss_pred -------------------hcCCCc------------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence 544443 2344444445556666677778888887764
No 243
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=84.44 E-value=1.1e+02 Score=38.25 Aligned_cols=262 Identities=16% Similarity=0.204 Sum_probs=140.0
Q ss_pred CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHH
Q 001796 692 TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAI 771 (1012)
Q Consensus 692 ~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~L 771 (1012)
..+.++..|+.++...... +-.. -..++.+..|+++.... ..++....+.+|+..+.-+++. .+..+..+.|.+
T Consensus 503 ~~~~~ki~a~~~~~~~~~~--~vl~--~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~ 576 (1005)
T KOG2274|consen 503 VPPPVKISAVRAFCGYCKV--KVLL--SLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEF-AASMESKICPLT 576 (1005)
T ss_pred CCCchhHHHHHHHHhccCc--eecc--ccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHH
Confidence 4556777777777655422 2111 12245666666666444 5677778888999998888873 445567778877
Q ss_pred HHHhc--CCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCC----HHHHHHHHHHHHhhccCCcCCcc
Q 001796 772 INILK--SGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGS----ITAKARAAALIGTLSTSSPKFTD 845 (1012)
Q Consensus 772 v~lL~--~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~----~~vk~~Aa~aL~nLs~~~~~l~~ 845 (1012)
+.+.. +.+|.+...+-.++..++.. .....-+ ..-.||.|+..+.... +....-|...|..+-++.+. +
T Consensus 577 i~lF~k~s~DP~V~~~~qd~f~el~q~--~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~--p 651 (1005)
T KOG2274|consen 577 INLFLKYSEDPQVASLAQDLFEELLQI--AANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS--P 651 (1005)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHH--HHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC--C
Confidence 77643 34565555554444444331 1111111 1237999999999765 44455556666655333320 0
Q ss_pred CCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHh-ccCCChHHHHHHHHHHHHHhhccchhhhhHHhhh
Q 001796 846 MPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKL-LQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQ 924 (1012)
Q Consensus 846 ~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~l-L~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~ 924 (1012)
.. . ..-.-+.|++.++ |++++.++...+-.+|..+... ..+....-..
T Consensus 652 -------------------L~---------~-~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~--~~eq~~t~~~ 700 (1005)
T KOG2274|consen 652 -------------------LP---------N-LLICYAFPAVAKITLHSDDHETLQNATECLRALISV--TLEQLLTWHD 700 (1005)
T ss_pred -------------------cc---------H-HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc--CHHHHHhhcc
Confidence 00 0 1113456777776 5667777777777777777652 1222222233
Q ss_pred cCCch--HHHHHhc-cCChhhHhHHHHHHHHHhch--HhhHhhhcccccch----hhhhhhhcccCCchHHHHHHHHHHH
Q 001796 925 EEAIK--PTLEILT-WGTDSLKEEALGFLEKVFMS--KEMVDTYGSSARLL----LVPLTSRNVHEDGSLERKAAKVLSL 995 (1012)
Q Consensus 925 ~~~v~--~L~~ll~-s~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~~----l~~L~~~~~~~~~~~~~~Aa~~L~~ 995 (1012)
.+|.. .+++.+. ==+|+..+.++..+.++... .....++|..-... +..|.+ ..+.++-+.--.+++|
T Consensus 701 e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~---ae~lsviQsLi~Vfah 777 (1005)
T KOG2274|consen 701 EPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQ---AETLSVIQSLIMVFAH 777 (1005)
T ss_pred CCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHH
Confidence 34433 4444333 12556666666666665432 23334444322222 223333 2455666666666666
Q ss_pred HHh
Q 001796 996 IER 998 (1012)
Q Consensus 996 L~~ 998 (1012)
|..
T Consensus 778 L~~ 780 (1005)
T KOG2274|consen 778 LVH 780 (1005)
T ss_pred Hhh
Confidence 543
No 244
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=84.16 E-value=0.61 Score=47.25 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=38.8
Q ss_pred ceecccccccCCCceec-CCCccccHHHHHHHHhc-CCCCCCC--CCcccCC
Q 001796 261 AFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDR-REKTDPE--TGVVLED 308 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~-~~~~cp~--~~~~l~~ 308 (1012)
+.+|||++....-|++- .|+|-|||+.|.+.++- -.+.||. |.++...
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~ 240 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVV 240 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheec
Confidence 78999999999999877 89999999999999973 2456887 4444443
No 245
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=84.04 E-value=1.2 Score=34.27 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=30.2
Q ss_pred cccccc--cCCCceecCCC-----ccccHHHHHHHHhc-CCCCCCCCC
Q 001796 264 CRITGT--VMMDPVSLYTG-----TTCERAAIEAWLDR-REKTDPETG 303 (1012)
Q Consensus 264 cpi~~~--~m~dPv~~~~g-----~t~~r~~i~~~~~~-~~~~cp~~~ 303 (1012)
|-||++ --.+|.+.+|. +-+=++|+++|+.. +..+||.|+
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 667765 44677777875 56889999999975 456899884
No 246
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=83.62 E-value=1.3e+02 Score=37.59 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=136.8
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHh-cCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHH
Q 001796 473 GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRII-QGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLL 551 (1012)
Q Consensus 473 ~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv 551 (1012)
+..+...-.|..++...++....+..... -.+...+..+. +..+..+..|+.+++..+..+-... ...+++..|.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~ 536 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLL 536 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHH
Confidence 44555555777776655543222211110 01122223332 3456678888888877762111100 1256677777
Q ss_pred hhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCcc
Q 001796 552 GLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRL 631 (1012)
Q Consensus 552 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l 631 (1012)
++......++...-..+|...+..+.-.....++-+.|..+.+....+.+..+...+-.++..|+.. .+..|.
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-----~~~~g~-- 609 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-----AANYGP-- 609 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-----HHhhcc--
Confidence 7777777788888888999998877777777788888999998887777767767777777777650 001111
Q ss_pred chhHHHHHHHHHHhccCC--ChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHhc
Q 001796 632 ELEPIVTNLLTLQQNFNS--SYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSL-LDDTDSEVREIAINLLFLFS 708 (1012)
Q Consensus 632 ~~~~~v~~Ll~ll~~~~~--~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~l-l~~~~~~v~~~a~~~L~~ls 708 (1012)
..+..++.|++.+....+ ......-++.+|-.+.++.++..-+.+. .-+.|++.+. +.+++.+...++..+|+.+-
T Consensus 610 m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 610 MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 125578999999886541 1224555666666565543332223332 2245666665 45567778888888888765
Q ss_pred cCCCcchHH
Q 001796 709 HHEPEGVVE 717 (1012)
Q Consensus 709 ~~~~~~~~~ 717 (1012)
....+....
T Consensus 689 s~~~eq~~t 697 (1005)
T KOG2274|consen 689 SVTLEQLLT 697 (1005)
T ss_pred hcCHHHHHh
Confidence 443444333
No 247
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=83.33 E-value=0.75 Score=48.62 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=36.9
Q ss_pred ceecccccccCCC---ceecCCCccccHHHHHHHHhcCC--CCCCCCC
Q 001796 261 AFKCRITGTVMMD---PVSLYTGTTCERAAIEAWLDRRE--KTDPETG 303 (1012)
Q Consensus 261 ~~~cpi~~~~m~d---Pv~~~~g~t~~r~~i~~~~~~~~--~~cp~~~ 303 (1012)
-|.||+..+.-.| ||.++|||..-+.+..+--+.|. ..||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 4999999999877 99999999999999988777765 3599883
No 248
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=83.31 E-value=1.2 Score=33.89 Aligned_cols=43 Identities=14% Similarity=0.102 Sum_probs=21.3
Q ss_pred cccccccC--CCceec--CCCccccHHHHHHHHhcCCCCCCCCCccc
Q 001796 264 CRITGTVM--MDPVSL--YTGTTCERAAIEAWLDRREKTDPETGVVL 306 (1012)
Q Consensus 264 cpi~~~~m--~dPv~~--~~g~t~~r~~i~~~~~~~~~~cp~~~~~l 306 (1012)
||+|.+.| +|--.. +||+.+||.|..+-...++..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78888877 221222 68999999997776665678999999864
No 249
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=83.13 E-value=46 Score=40.88 Aligned_cols=106 Identities=12% Similarity=0.098 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHH-HHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHH
Q 001796 693 DSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEA-LVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAI 771 (1012)
Q Consensus 693 ~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~-Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~L 771 (1012)
+++++..|+.++.|+....|+.+...++.-+--.. =-..+..+......++... .....+....||..|
T Consensus 675 Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~----------~mw~~Vr~ndGIkiL 744 (1516)
T KOG1832|consen 675 DPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLR----------QMWEAVRGNDGIKIL 744 (1516)
T ss_pred CHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHH----------HHHHHHhcCccHHHH
Confidence 78999999999999887756665544321110000 0001111111111111111 113345567899999
Q ss_pred HHHhcCCCh-----hHHHHHHHHHHhccCCCCHHHHHHHHHcCC
Q 001796 772 INILKSGTM-----EAKENALSALFRFTDPTNLEAQRNVVERGV 810 (1012)
Q Consensus 772 v~lL~~~~~-----~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~ 810 (1012)
++||+-..| .++.-|+.+|.-|+.. +..++++.+...
T Consensus 745 l~Ll~~k~P~t~aD~IRalAc~~L~GLaR~--~tVrQIltKLpL 786 (1516)
T KOG1832|consen 745 LKLLQYKNPPTTADCIRALACRVLLGLARD--DTVRQILTKLPL 786 (1516)
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHhccccC--cHHHHHHHhCcc
Confidence 999985543 5899999999999885 566666665444
No 250
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=82.95 E-value=4.1 Score=48.17 Aligned_cols=41 Identities=20% Similarity=0.125 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCCh
Q 001796 473 GPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAE 518 (1012)
Q Consensus 473 ~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 518 (1012)
+.|..+|..|+..|-.+|..+++....++ ..|+++|.++++
T Consensus 70 Ded~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~ 110 (556)
T PF05918_consen 70 DEDVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDP 110 (556)
T ss_dssp -SSHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---H
T ss_pred cccHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccH
Confidence 33555555555555555544444433332 235555554443
No 251
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=82.78 E-value=22 Score=41.24 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=106.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCH----HHHHHHHHHHHhhccCCcCC
Q 001796 768 LNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSI----TAKARAAALIGTLSTSSPKF 843 (1012)
Q Consensus 768 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~----~vk~~Aa~aL~nLs~~~~~l 843 (1012)
...+.+.+.++++..+..+...|..++. ++.....+....++..|..+..+++. .+......|+..+-.+
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~--d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh---- 158 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL--DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH---- 158 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc--cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh----
Confidence 4567788999999888889999999987 57888889999999999999999854 3444455555544111
Q ss_pred ccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhc--cCCChHHHHHHHHHHHHHhhccchhhhhHH
Q 001796 844 TDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLL--QGRVHATAYEAIQTLSTLVQEGCQQRGVNV 921 (1012)
Q Consensus 844 ~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL--~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~ 921 (1012)
+ .. +...+...+|.....+. .-.+..+...|+..|-++... .+.....
T Consensus 159 -----------------------g-vv----sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~--s~~~~~~ 208 (713)
T KOG2999|consen 159 -----------------------G-VV----SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG--SDTLRQL 208 (713)
T ss_pred -----------------------c-ee----eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC--ChHHHHH
Confidence 1 00 01111122222222222 224556778888888888864 2445566
Q ss_pred hhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch
Q 001796 922 LHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 922 i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~ 956 (1012)
+.+.--+..|+..++.++..++..|...+..++.-
T Consensus 209 v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 209 VAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred HHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 77767789999999999999999999999888874
No 252
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=82.73 E-value=88 Score=35.09 Aligned_cols=256 Identities=13% Similarity=0.132 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHHhc-CCCchHHHHHH--cCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhH
Q 001796 559 FQSKELSLSVLVKLS-GCSKNRELISA--AGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEP 635 (1012)
Q Consensus 559 ~~~~~~a~~~L~~Ls-~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~ 635 (1012)
.++.+.+...|..+. ..+..+....+ +..+..+-.+|..........+.++..-..+. ..+
T Consensus 13 ~ElVr~l~e~L~~L~~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~----------------~~d 76 (335)
T PF08569_consen 13 AELVRSLREALEKLDSKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIY----------------RSD 76 (335)
T ss_dssp HHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHH----------------HHT
T ss_pred HHHHHHHHHHHHHhccccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHH----------------HhC
Confidence 356666677777773 32333332222 12344444555544333222233333322332 234
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCc-hH---HHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhcc
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSE-AE---LVKIAVVKA--NGVSLILSLLDDTDSEVREIAINLLFLFSH 709 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~-~~---~~~~~i~~~--g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~ 709 (1012)
.+..|+..+..-+ .+.++.+..+..++-... ++ .....+... ..+..|+..- +++++--.|-.+|+....
T Consensus 77 ll~~Li~~L~~L~--fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 77 LLYLLIRNLPKLD--FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhCC--CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 6677777666644 567888888888886532 11 123344333 1223333222 356677778888888877
Q ss_pred CCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhh---ccHHHHHHHhcCCChhHHHHH
Q 001796 710 HEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIEL---DGLNAIINILKSGTMEAKENA 786 (1012)
Q Consensus 710 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~---g~i~~Lv~lL~~~~~~~~~~a 786 (1012)
+ +.....+.....+..+.+.+..+ +-++...|..++.-+-............. .....+..+|.+++--+|+.+
T Consensus 153 ~--e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs 229 (335)
T PF08569_consen 153 H--ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS 229 (335)
T ss_dssp S--HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred h--HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence 7 66666777777788888877766 67788888888877655566655555544 356677888999998899999
Q ss_pred HHHHHhccCCCCHHHHH----HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccC
Q 001796 787 LSALFRFTDPTNLEAQR----NVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTS 839 (1012)
Q Consensus 787 ~~aL~~Ls~~~~~~~~~----~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~ 839 (1012)
+..|..+-.. +.+.. -+.+..-+..++.+|++.+..++..|-....-+..+
T Consensus 230 lkLL~ellld--r~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 230 LKLLGELLLD--RSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHS--GGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHc--hhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999998753 33323 233445588899999999999999999999888543
No 253
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=82.71 E-value=62 Score=36.84 Aligned_cols=202 Identities=16% Similarity=0.212 Sum_probs=107.1
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC-ChHHHH-HHHHHHHhcccccchhhH
Q 001796 464 ILFLVTLIKG-PVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG-AESSRI-LMMKALLSMELVDSNLEL 540 (1012)
Q Consensus 464 i~~Lv~lL~~-~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~-~a~~aL~~Ls~~~~~~~~ 540 (1012)
|..++.-+.+ .....|..++--|..-+ .+++.+..+...|.++.+++.+... +...-- .++.+++-++.+..+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 3444444442 23356666666665554 4788999999999999999999543 332333 334444445554444444
Q ss_pred hhhcCChHHHHhhhc--CC-------C-------h----------------------------hHHHHHHHHHHHhc---
Q 001796 541 LGKEGIIPPLLGLVG--SG-------N-------F----------------------------QSKELSLSVLVKLS--- 573 (1012)
Q Consensus 541 i~~~g~i~~Lv~lL~--~~-------~-------~----------------------------~~~~~a~~~L~~Ls--- 573 (1012)
+-+.+....+++++. .. + . .-+..|+.+|-.++
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~ 181 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSL 181 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHH
Confidence 444555555566665 00 0 0 01112333333442
Q ss_pred ------------CCCchHHHHHHcCChHHHHHHhhc----CC----------CChhHHHHHHHHHHHhhc---cCcccee
Q 001796 574 ------------GCSKNRELISAAGGIPQVLELMFS----SH----------VPSNIIVKCSEILEKLSS---DGIKFLV 624 (1012)
Q Consensus 574 ------------~~~~~~~~i~~~g~i~~Lv~lL~~----~~----------~~~~~~~~a~~~L~nLa~---~~~~~~~ 624 (1012)
..+.-++.+...|++..+++++.. .. ......+.|..+|.|.+. ++....+
T Consensus 182 ~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l~ 261 (361)
T PF07814_consen 182 REAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYLL 261 (361)
T ss_pred hhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHHH
Confidence 012225666777889999999862 11 011245778888888775 2222233
Q ss_pred cccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchH
Q 001796 625 DEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAE 670 (1012)
Q Consensus 625 ~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~ 670 (1012)
...+.. .......++..+.. ..+.....+++.+.|++.+.+.
T Consensus 262 ~~~~~~--l~~~~~~l~~~~~~--~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 262 SHRSSL--LPQLLSTLLRQCDD--QVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred Hhcccc--hHHHHHHHHHHHHH--HHHHHHHHHHHHeeeCCCCCcc
Confidence 222211 11222222222221 1123467899999999987643
No 254
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=82.06 E-value=32 Score=37.93 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=73.8
Q ss_pred ChHHHHH-HHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchh--
Q 001796 462 SGILFLV-TLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNL-- 538 (1012)
Q Consensus 462 g~i~~Lv-~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~-- 538 (1012)
+.+..|+ .-+++.+..+|+.|...|.-.+-.+.+. ....++.+...+..++..++..|+.+++.+....+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4444444 5667888999999999999887655322 1223667788888889999999999999877632211
Q ss_pred h-------HhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 539 E-------LLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 539 ~-------~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
. .......+..+.+.+.+.+++++..|+..+..|-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1 12224456667777777777777777777777654
No 255
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=81.80 E-value=0.7 Score=50.26 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=41.2
Q ss_pred ecccccccCCCceecCCCccccHHHHHHHHhc-CCCCCCCCCcccCCCC
Q 001796 263 KCRITGTVMMDPVSLYTGTTCERAAIEAWLDR-REKTDPETGVVLEDTS 310 (1012)
Q Consensus 263 ~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~-~~~~cp~~~~~l~~~~ 310 (1012)
.|-||-|==+|=-|=+|||-.|-.|+..|.++ +..+||+||..+.-++
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE 419 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence 49999998888777799999999999999975 4789999998876543
No 256
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.50 E-value=0.9 Score=50.28 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=41.0
Q ss_pred CCceecccccccCCCce-----e---cCCCccccHHHHHHHHhcC------CCCCCCCCcccC
Q 001796 259 LNAFKCRITGTVMMDPV-----S---LYTGTTCERAAIEAWLDRR------EKTDPETGVVLE 307 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv-----~---~~~g~t~~r~~i~~~~~~~------~~~cp~~~~~l~ 307 (1012)
-.+..|-||++.-.+++ . ..|.|+||-.||.+|-... .+.||.|+.+..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 47999999999999998 3 4799999999999998432 367999988654
No 257
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.64 E-value=1.4 Score=47.37 Aligned_cols=48 Identities=13% Similarity=-0.094 Sum_probs=40.8
Q ss_pred CCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 259 LNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
.+|-.||||..==-..|..+|||.-|..||.+++-. .+.|=.|+....
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 589999999987788888999999999999999975 667888866544
No 258
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=79.55 E-value=1.2 Score=34.64 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=34.6
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCC
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDT 309 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~ 309 (1012)
+.-|=.+...=...++.+|||-.++.| |--+..+-||.|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~---f~~~rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNC---FPGERYNGCPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccccccccccceeeccc---cChhhccCCCCCCCcccCC
Confidence 344555666666788999999999998 5445567899999988643
No 259
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=78.79 E-value=12 Score=37.89 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=62.3
Q ss_pred ChhhHHHHhhcCCcHHHHHHHhc---------CChHHHHHHHHHHHhcccccchhhHhhh-cCChHHHHhhhcCCChhHH
Q 001796 493 DEENFCRAAKSGWYKPLIDRIIQ---------GAESSRILMMKALLSMELVDSNLELLGK-EGIIPPLLGLVGSGNFQSK 562 (1012)
Q Consensus 493 ~~~~~~~i~~~g~i~~Lv~lL~~---------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~ 562 (1012)
+......+.+.||+..|+.+|.. .+......++.+|..+..+......+.+ .+++..|+..|.+.+..++
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r 175 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTR 175 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHH
Confidence 34556677788999999999863 2335677888898888887766666665 8999999999999999999
Q ss_pred HHHHHHHHHhc
Q 001796 563 ELSLSVLVKLS 573 (1012)
Q Consensus 563 ~~a~~~L~~Ls 573 (1012)
..++.+|..+|
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 260
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.29 E-value=9.8 Score=39.68 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhc-cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcH
Q 001796 604 IIVKCSEILEKLSS-DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGV 682 (1012)
Q Consensus 604 ~~~~a~~~L~nLa~-~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v 682 (1012)
.+..|+++|..|+- +....++-..+..-..+..+..|++++.... ++..++-|+..|.+||..+....+..-.+.+.|
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e-~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMRE-DQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 46899999999997 4443333333333335677777888876644 355899999999999998776555655677889
Q ss_pred HHHHHhhcCCCHH
Q 001796 683 SLILSLLDDTDSE 695 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~ 695 (1012)
..|+.++++....
T Consensus 219 ~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 219 SHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999875443
No 261
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.26 E-value=57 Score=39.32 Aligned_cols=92 Identities=22% Similarity=0.166 Sum_probs=61.2
Q ss_pred ChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHH
Q 001796 650 SYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALV 729 (1012)
Q Consensus 650 ~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv 729 (1012)
+..++..++.+|.-+.-.... ....+-.+....+..-+.+..+.+|..|+.+|..+-.+..++. -.++..+.
T Consensus 98 dk~VRfrvlqila~l~d~~~e--idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee------~~v~n~l~ 169 (892)
T KOG2025|consen 98 DKKVRFRVLQILALLSDENAE--IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE------CPVVNLLK 169 (892)
T ss_pred chhHHHHHHHHHHHHhccccc--cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc------ccHHHHHH
Confidence 346888888888777542221 1222223334555555667788999999999999874423222 35678888
Q ss_pred HhhcCCCchHHHHHHHHHHh
Q 001796 730 GFLENDAKHDVQMAAAGLLA 749 (1012)
Q Consensus 730 ~lL~~~~~~~~~~~Aa~aL~ 749 (1012)
.++++..+++++.+|+..+.
T Consensus 170 ~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 170 DLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred HHHhcCCcHHHHHHHHHhhc
Confidence 99998888999988755443
No 262
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.25 E-value=0.59 Score=56.88 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=38.9
Q ss_pred eecccccccCCCceecCCCccccHHHHHHHHhcC-CCCCCCCCcccCC
Q 001796 262 FKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRR-EKTDPETGVVLED 308 (1012)
Q Consensus 262 ~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~-~~~cp~~~~~l~~ 308 (1012)
+.|+||.+ -.+||++.|||-+|++|+.+.+... ...||.|+..+.+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 89999999 8999999999999999999977643 3469999776654
No 263
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=77.63 E-value=80 Score=34.82 Aligned_cols=161 Identities=15% Similarity=0.073 Sum_probs=101.5
Q ss_pred ccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChh-hHHH-----
Q 001796 426 GRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEE-NFCR----- 499 (1012)
Q Consensus 426 ~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~-~~~~----- 499 (1012)
+.+..+++.|+..|.-.+.-+. ..+ ...++.+...++.++.+++..|+.+++.+...... ....
T Consensus 38 ~~~~~vR~~al~cLGl~~Lld~--------~~a--~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~ 107 (298)
T PF12719_consen 38 SSDPAVRELALKCLGLCCLLDK--------ELA--KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDND 107 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHhCh--------HHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccC
Confidence 3456788888888877766442 221 13467777777777889999999999987643321 1111
Q ss_pred --HhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcC----CChhHHHHHHHHHHHhc
Q 001796 500 --AAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGS----GNFQSKELSLSVLVKLS 573 (1012)
Q Consensus 500 --i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls 573 (1012)
......+..+...|.+.+++++..++..+..|-....... ...++..|+-+.-+ ++..+++.-...+-..+
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~ 184 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYA 184 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 1224567778888888899999999999999876443222 12333444433322 33566665555566666
Q ss_pred CCCchHHHHHHcCChHHHHHHhhcCC
Q 001796 574 GCSKNRELISAAGGIPQVLELMFSSH 599 (1012)
Q Consensus 574 ~~~~~~~~i~~~g~i~~Lv~lL~~~~ 599 (1012)
.........+..+.+|.+-.+.....
T Consensus 185 ~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 185 SSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 55554455666667888777776654
No 264
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=77.61 E-value=13 Score=44.25 Aligned_cols=120 Identities=25% Similarity=0.328 Sum_probs=68.0
Q ss_pred ChhhHHHHHHHHHHhccC-chHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHH
Q 001796 650 SYNVRKPALRALFRICKS-EAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEAL 728 (1012)
Q Consensus 650 ~~~~~~~al~aL~~L~~~-~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~L 728 (1012)
+...+.-|...+...-++ |+ .+..++..+++++++.+..+|..|++.|-.++.+.++... +.+..|
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~-------l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~------kvaDvL 101 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPD-------LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS------KVADVL 101 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GG-------GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH------HHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChh-------hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh------HHHHHH
Confidence 355677777777666553 43 1234568899999999999999999999999888665543 346788
Q ss_pred HHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhc---CCChhHHHHHHHHHH
Q 001796 729 VGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILK---SGTMEAKENALSALF 791 (1012)
Q Consensus 729 v~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~---~~~~~~~~~a~~aL~ 791 (1012)
+++|.+.+..++ ..+-.+|..|-..++. +.+..|...+. ++++.+|+.++..|.
T Consensus 102 ~QlL~tdd~~E~-~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 102 VQLLQTDDPVEL-DAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHTT---HHHH-HHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHhcccHHHH-HHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 899987744332 2222333333222332 33555555444 456667777776663
No 265
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=76.67 E-value=11 Score=47.47 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=106.7
Q ss_pred HHHHHHhhcC----CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHH
Q 001796 682 VSLILSLLDD----TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELS 757 (1012)
Q Consensus 682 v~~Lv~ll~~----~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~ 757 (1012)
.|.+++.+.. .+|+++.+|.-+|+.+..-+ .+. . ...+|.|+..+..+.++-++.+++.+++.|+..-++
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a~f----c-es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-AEF----C-ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-HHH----H-HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 5677777754 47889999988888764331 111 1 345899999998766888999999999988876554
Q ss_pred HHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 001796 758 LTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLS 837 (1012)
Q Consensus 758 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs 837 (1012)
.... .-+.|-+-|++.++.+|+.|.-+|.+|... ..+.-.|.++-....+.+++++++.-|-.-...|+
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 2222 134566678889999999999999999774 33456799999999999999999999887777776
Q ss_pred cCC
Q 001796 838 TSS 840 (1012)
Q Consensus 838 ~~~ 840 (1012)
..+
T Consensus 1064 ~k~ 1066 (1251)
T KOG0414|consen 1064 SKG 1066 (1251)
T ss_pred hcc
Confidence 544
No 266
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=76.23 E-value=1.7 Score=46.28 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=34.8
Q ss_pred ceecccccccCC--C--ceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCCC
Q 001796 261 AFKCRITGTVMM--D--PVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDTS 310 (1012)
Q Consensus 261 ~~~cpi~~~~m~--d--Pv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~ 310 (1012)
|+ ||+|.+.|. | ---.+||+..||-|..---..-+..||-||.......
T Consensus 15 d~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 15 DY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 44 999999985 2 2234789999999854433334678999998876554
No 267
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.97 E-value=0.98 Score=34.64 Aligned_cols=45 Identities=16% Similarity=-0.007 Sum_probs=34.8
Q ss_pred eecccccccCCCceecCCCc-cccHHHHHHHHhcCCCCCCCCCccc
Q 001796 262 FKCRITGTVMMDPVSLYTGT-TCERAAIEAWLDRREKTDPETGVVL 306 (1012)
Q Consensus 262 ~~cpi~~~~m~dPv~~~~g~-t~~r~~i~~~~~~~~~~cp~~~~~l 306 (1012)
-.|.||.|==.|.|+-.||| -.|-.|=.+-+..++..||.||.+.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 46999999999999999998 4455665554445788999998864
No 268
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.39 E-value=1.6 Score=50.74 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=40.1
Q ss_pred CceecccccccC----CCceecCCCccccHHHHHHHHhcCCCCCC--CCCcc--cCCCCCccCHHHHHHH
Q 001796 260 NAFKCRITGTVM----MDPVSLYTGTTCERAAIEAWLDRREKTDP--ETGVV--LEDTSLRSNSPLRQSI 321 (1012)
Q Consensus 260 ~~~~cpi~~~~m----~dPv~~~~g~t~~r~~i~~~~~~~~~~cp--~~~~~--l~~~~l~~n~~l~~~i 321 (1012)
+-++|+||..+| ..||.+-||||.||.|.+.-.+. +|| .-.-. ....+.--|++|-+.+
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhh
Confidence 457899997776 57999999999999999987643 566 32211 1223444566665554
No 269
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.39 E-value=1.7 Score=48.83 Aligned_cols=34 Identities=15% Similarity=0.168 Sum_probs=28.6
Q ss_pred eecCCCccccHHHHHHHHhcCCCCCCCCCcccCC
Q 001796 275 VSLYTGTTCERAAIEAWLDRREKTDPETGVVLED 308 (1012)
Q Consensus 275 v~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~ 308 (1012)
.+.+|.|-|-|.|++.|.+.-.-.||+||.+|+.
T Consensus 602 m~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 602 MLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 3458999999999999998645589999998863
No 270
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.69 E-value=3.1e+02 Score=36.47 Aligned_cols=108 Identities=8% Similarity=0.071 Sum_probs=68.4
Q ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-ccchhh
Q 001796 461 CSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL-VDSNLE 539 (1012)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~~~~~ 539 (1012)
.+.+..++..|..+...+|..|..+|.++.+.++.. +....+-..+..-+......+|..|+..++.... +++...
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 356777788888888889999999999998766532 2222223333344445567788888888886433 333222
Q ss_pred HhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCC
Q 001796 540 LLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCS 576 (1012)
Q Consensus 540 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 576 (1012)
.+. ..+..-..+....+|+.+.++|+.+|...
T Consensus 892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~ 923 (1692)
T KOG1020|consen 892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEET 923 (1692)
T ss_pred HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhC
Confidence 221 12222223344678999999999999643
No 271
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=73.66 E-value=1.6e+02 Score=36.54 Aligned_cols=164 Identities=13% Similarity=0.123 Sum_probs=89.9
Q ss_pred HHHHHhhccHHHHHHHhcCC--------ChhHHHHHHHHHHhccCCCCHHHHHHHHHc--------CCHHHHHHHHhc--
Q 001796 759 TMKLIELDGLNAIINILKSG--------TMEAKENALSALFRFTDPTNLEAQRNVVER--------GVYPLLVNLLQI-- 820 (1012)
Q Consensus 759 ~~~l~~~g~i~~Lv~lL~~~--------~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~--------g~i~~Lv~lL~s-- 820 (1012)
...+...+++..++++.... ..+....|.++|+-++.- |..|..+... .+|..+.+.-.-
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i--P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI--PDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec--chHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 34567778888888886532 235788899999988775 5666655532 134444433221
Q ss_pred --CCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHH
Q 001796 821 --GSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHAT 898 (1012)
Q Consensus 821 --~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v 898 (1012)
.+|.+++.|...+.|+- |+-..++ +.+..++....+-+. ..+=.......
T Consensus 672 ~i~Dpei~~~AL~vIincV-------------------------c~pp~~r--~s~i~~v~S~~g~~r-~~l~~~~ks~~ 723 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCV-------------------------CPPPTTR--PSTIVAVGSQSGDRR-IFLGAGTKSAK 723 (1516)
T ss_pred cccCHHHHHHHHhhhheee-------------------------cCCCCcc--hhhhhhccccCCCcc-ccccCCCchHH
Confidence 27889999999998862 1111100 000011110000000 00000011112
Q ss_pred HHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCCh-----hhHhHHHHHHHHHhchHhhHhhhc
Q 001796 899 AYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTD-----SLKEEALGFLEKVFMSKEMVDTYG 964 (1012)
Q Consensus 899 ~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~-----~~~~~a~~aL~~l~~~~~~~~~~~ 964 (1012)
.+..+. ....++...+||..|++|++..+| .+|.-|+.+|.-+++++.+++-+.
T Consensus 724 le~~l~------------~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIlt 782 (1516)
T KOG1832|consen 724 LEQVLR------------QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILT 782 (1516)
T ss_pred HHHHHH------------HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 222222 223344567889999998885544 478888889999999887776544
No 272
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=73.20 E-value=1.4 Score=53.24 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=33.2
Q ss_pred eecccccccCC--Cceec-----CCCccccHHHHHHHHhc-CCCCCCCCCccc
Q 001796 262 FKCRITGTVMM--DPVSL-----YTGTTCERAAIEAWLDR-REKTDPETGVVL 306 (1012)
Q Consensus 262 ~~cpi~~~~m~--dPv~~-----~~g~t~~r~~i~~~~~~-~~~~cp~~~~~l 306 (1012)
=-|+||.-++. |--.- .|.|.|--+|+-+||.+ |+.+||.||..+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 35999988764 32111 45678888999999985 567999998654
No 273
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=72.51 E-value=2.6 Score=44.63 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=28.2
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCcccCC
Q 001796 278 YTGTTCERAAIEAWLDRREKTDPETGVVLED 308 (1012)
Q Consensus 278 ~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~ 308 (1012)
+|||+.|-+|.-.-|..|...||.|+..|..
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 8999999999999999999999999887643
No 274
>PF04641 Rtf2: Rtf2 RING-finger
Probab=72.47 E-value=3.8 Score=44.25 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=32.2
Q ss_pred CceecccccccCCCceec-CCCccccHHHHHHHHhcC
Q 001796 260 NAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRR 295 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~ 295 (1012)
.-+.|+||++++++||+. .-|+-|.+.+|-+|+...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 478999999999999976 569999999999999864
No 275
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.40 E-value=3 Score=45.65 Aligned_cols=49 Identities=12% Similarity=0.263 Sum_probs=33.5
Q ss_pred ceecccccccCC---Cceec-CCCccccHHHHHHHHhcC--CCCCCCCCcccCCC
Q 001796 261 AFKCRITGTVMM---DPVSL-YTGTTCERAAIEAWLDRR--EKTDPETGVVLEDT 309 (1012)
Q Consensus 261 ~~~cpi~~~~m~---dPv~~-~~g~t~~r~~i~~~~~~~--~~~cp~~~~~l~~~ 309 (1012)
--.|.||-+.+- |---+ .|||+|.-.|++.||.-. +++||.|+-++...
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 456888855431 11123 599999999999999852 36899998555443
No 276
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=71.73 E-value=34 Score=41.78 Aligned_cols=133 Identities=12% Similarity=0.064 Sum_probs=78.3
Q ss_pred HHHHHhhcCC----CHHHHHHHHHHHHHhccCCCcchHH--hhhcCCChHHHHHhhcC---CCchHHHHHHHHHHhccCC
Q 001796 683 SLILSLLDDT----DSEVREIAINLLFLFSHHEPEGVVE--YLLKPKRLEALVGFLEN---DAKHDVQMAAAGLLANLPK 753 (1012)
Q Consensus 683 ~~Lv~ll~~~----~~~v~~~a~~~L~~ls~~~~~~~~~--~l~~~~~i~~Lv~lL~~---~~~~~~~~~Aa~aL~nL~~ 753 (1012)
..+.+++.++ ++.++..|+-.+..+.+........ .......++.|...|.. ..+.+.+.....+|+|+..
T Consensus 396 ~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 396 KALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 4455666543 4457777776666654321111000 00113456666665533 2345556678899999987
Q ss_pred CCHHHHHHHHhhccHHHHHHHhc-C--CChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC--CHHHHHH
Q 001796 754 SELSLTMKLIELDGLNAIINILK-S--GTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG--SITAKAR 828 (1012)
Q Consensus 754 ~~~~~~~~l~~~g~i~~Lv~lL~-~--~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~vk~~ 828 (1012)
... ++.+..++. . .+..+|..|+++|.+++... ++. +.+.|..+..+. ++++|..
T Consensus 476 ~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~-p~~--------v~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 476 PSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD-PRK--------VQEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred hhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC-chH--------HHHHHHHHHcCCCCChHHHHH
Confidence 433 566666665 2 24578999999999886532 221 345566666653 6788888
Q ss_pred HHHHHHh
Q 001796 829 AAALIGT 835 (1012)
Q Consensus 829 Aa~aL~n 835 (1012)
|..+|-.
T Consensus 536 A~~~lm~ 542 (574)
T smart00638 536 AVLVLME 542 (574)
T ss_pred HHHHHHh
Confidence 8887765
No 277
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=71.56 E-value=1.1e+02 Score=38.02 Aligned_cols=170 Identities=20% Similarity=0.214 Sum_probs=102.8
Q ss_pred HHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChH--HHHHhhcCCC
Q 001796 660 ALFRICKSEAELVKIAVVKANGVSLILSLLDD-TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLE--ALVGFLENDA 736 (1012)
Q Consensus 660 aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~--~Lv~lL~~~~ 736 (1012)
+||+++..... .+..+.+.||+..+...++. .+.+++..++..+.+++...+.. ..+.....+. .+-.++..-+
T Consensus 494 ~l~~~t~~~~~-~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~--~~~~~~~~~~~~~f~~~~~~w~ 570 (699)
T KOG3665|consen 494 ALWNITDENPE-TCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELR--ELLMIFEFIDFSVFKVLLNKWD 570 (699)
T ss_pred HHHhhhcCCHH-HHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHhhcc
Confidence 88899886555 46788899999999999886 46779999999999988652111 1111111111 2222343333
Q ss_pred chHHHHHHHHHHhccCCCCHH---------HHHHHHh--------------hccHHH-HHHHhcC-CChhHHHHHHHHHH
Q 001796 737 KHDVQMAAAGLLANLPKSELS---------LTMKLIE--------------LDGLNA-IINILKS-GTMEAKENALSALF 791 (1012)
Q Consensus 737 ~~~~~~~Aa~aL~nL~~~~~~---------~~~~l~~--------------~g~i~~-Lv~lL~~-~~~~~~~~a~~aL~ 791 (1012)
..+.-..|+++|+.+..+.++ ..+.+.+ .....+ +..++.. ..+..+--|++++.
T Consensus 571 ~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~ 650 (699)
T KOG3665|consen 571 SIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK 650 (699)
T ss_pred hhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence 446667788888877664221 0111111 111122 4444443 35567888999999
Q ss_pred hccCCCCHHHHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHH
Q 001796 792 RFTDPTNLEAQRNVVERGVYPLLVNLLQIG-SITAKARAAALI 833 (1012)
Q Consensus 792 ~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~vk~~Aa~aL 833 (1012)
++... ++++.+.+.+.|+++.+...-... ...++..+...+
T Consensus 651 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 692 (699)
T KOG3665|consen 651 NVLEQ-NKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI 692 (699)
T ss_pred HHHHc-ChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence 99876 577888889999999888765432 233444444333
No 278
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=71.54 E-value=49 Score=41.04 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=88.3
Q ss_pred cCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhh-h-cCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHH
Q 001796 503 SGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLG-K-EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRE 580 (1012)
Q Consensus 503 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~-~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 580 (1012)
..++|.|++.....+...|-.-..+|.+.-.+-.- ..+. + ....|.|++.|+-+|..++-.++.++.-+-.....-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 35678888888766667777778888776654333 2333 2 5577888888888888877777766654432111100
Q ss_pred HHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHHHHHHHHhccCC-ChhhHHHHHH
Q 001796 581 LISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVTNLLTLQQNFNS-SYNVRKPALR 659 (1012)
Q Consensus 581 ~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~-~~~~~~~al~ 659 (1012)
.--- ...++.++.+-++.+. ...+|+.|+.
T Consensus 945 t~~~-------------------------------------------------~Tlvp~lLsls~~~~n~~~~VR~~ALq 975 (1030)
T KOG1967|consen 945 TEHL-------------------------------------------------STLVPYLLSLSSDNDNNMMVVREDALQ 975 (1030)
T ss_pred hHHH-------------------------------------------------hHHHHHHHhcCCCCCcchhHHHHHHHH
Confidence 0000 1122333332222221 1347888888
Q ss_pred HHHHhcc-CchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 001796 660 ALFRICK-SEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLF 705 (1012)
Q Consensus 660 aL~~L~~-~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~ 705 (1012)
+|..|+. -|.+.+ .-.+-.++..|++.|++++.-+|..|..+=.
T Consensus 976 cL~aL~~~~P~~~l--~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 976 CLNALTRRLPTKSL--LSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHhccCCCccc--ccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 8888887 343311 1112234577888888888889998876543
No 279
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.37 E-value=1.3e+02 Score=37.99 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=69.3
Q ss_pred HHHHHHhccccchhhhhhhcCCccccccccccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCC
Q 001796 396 ITLKQLVKGHARNKEKVIDYGGWDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPV 475 (1012)
Q Consensus 396 ~~L~~La~~~~~~~~~i~~~g~i~~lv~lL~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 475 (1012)
..|..+.+.+++|...+.++.++..|+..+-+|. -+-.-+.++..+...+... ....-+-.+|..|+++-
T Consensus 664 DcLisllKnnteNqklFreanGvklilpflinde-hRSslLrivscLitvdpkq---------vhhqelmalVdtLksgm 733 (2799)
T KOG1788|consen 664 DCLISLLKNNTENQKLFREANGVKLILPFLINDE-HRSSLLRIVSCLITVDPKQ---------VHHQELMALVDTLKSGM 733 (2799)
T ss_pred HHHHHHHhccchhhHHHHhhcCceEEEEeeechH-HHHHHHHHHHHHhccCccc---------ccHHHHHHHHHHHHhcc
Confidence 3466678999999999999999999999883322 1222233444443333211 01133556777777521
Q ss_pred --------HH----HHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHh
Q 001796 476 --------RE----SAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRII 514 (1012)
Q Consensus 476 --------~~----~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~ 514 (1012)
.+ ....-..++..+...+...++.+.++|++..|...|.
T Consensus 734 vt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 734 VTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred eeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 11 2333455666776677788889999999999988875
No 280
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.18 E-value=2.3e+02 Score=33.88 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=91.7
Q ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHhhH----HHHHH
Q 001796 28 NVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCR----YIVNE 103 (1012)
Q Consensus 28 ~~~~~k~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~~~skl~l~~~~~----~~~~~ 103 (1012)
...-.+++-++..+++.+|.--++||...++ .|.-...|.+-+.-|..+..|.+.| +..|-++.++ .+...
T Consensus 172 ~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l--~~gE~e~L~~e~~rLsn~ekl~~~~---~~a~~~L~ge~~~~~~~~~ 246 (557)
T COG0497 172 ELEDLQEKERERAQRADLLQFQLEELEELNL--QPGEDEELEEERKRLSNSEKLAEAI---QNALELLSGEDDTVSALSL 246 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHhhHHHHHHHH---HHHHHHHhCCCCchhHHHH
Confidence 3344566778999999999999999965443 3445778888888888888888888 3456666543 35555
Q ss_pred HHHHHHHHHHHhhhcc--ccch-hcchHHHHHHHHHHHHHHHhhhh--hchHHHHHHHhhhhhhccccchhhhHHHHHHH
Q 001796 104 IQEVTRNIGRSLASLS--LANT-EVLSEISDQMNRLQNEMQRVEFK--ASQSQIVDKLNQGLRDQKLDQGFANDMLEEIA 178 (1012)
Q Consensus 104 ~~~~~~~~~~~l~~~p--~~~~-~~~~~v~e~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (1012)
+......+.. +..++ |..+ ..-++.-.+++.+..+++++.-. .||.++ +.+++ -...|..++
T Consensus 247 l~~a~~~l~~-~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L-~~ve~-----------Rl~~L~~l~ 313 (557)
T COG0497 247 LGRALEALED-LSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRL-EEVEE-----------RLFALKSLA 313 (557)
T ss_pred HHHHHHHHHH-hhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHH-----------HHHHHHHHH
Confidence 5555544433 11111 1000 11122333444444555544322 222221 11221 014567788
Q ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHH
Q 001796 179 RAVGVPVEPSEISKELASFRREKEEAA 205 (1012)
Q Consensus 179 ~~l~~~~~~~~~~~E~~~l~~~~~~~~ 205 (1012)
++.|. ++.++......++.++....
T Consensus 314 RKY~~--~~~~l~~~~~~~~~el~~L~ 338 (557)
T COG0497 314 RKYGV--TIEDLLEYLDKIKEELAQLD 338 (557)
T ss_pred HHhCC--CHHHHHHHHHHHHHHHHHhh
Confidence 88887 47777777777777775544
No 281
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=13 Score=43.15 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=85.8
Q ss_pred cCcHHHHHHh-hcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHH
Q 001796 679 ANGVSLILSL-LDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELS 757 (1012)
Q Consensus 679 ~g~v~~Lv~l-l~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~ 757 (1012)
.|+|..++.. ..+.+.+++++|..+|..+...+ ...++..|++|..+.+..++...+-+|+--|.+...
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D----------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD----------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEecC----------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 3556677777 66778999999999999876653 344566778887777888998888888877665442
Q ss_pred HHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCH
Q 001796 758 LTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSI 823 (1012)
Q Consensus 758 ~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~ 823 (1012)
.-++..|-.++.+.+.-+|..|+-++..+....++++.-.+ .+++..+-+++.+.+.
T Consensus 620 -------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe 676 (926)
T COG5116 620 -------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHE 676 (926)
T ss_pred -------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhH
Confidence 12355666677777777888888887777655444432221 2456666666665443
No 282
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.11 E-value=2.2 Score=46.68 Aligned_cols=49 Identities=27% Similarity=0.394 Sum_probs=42.1
Q ss_pred ceecccccccCCC---ceecCCCccccHHHHHHHHhcCCCCCCCCCcccCCC
Q 001796 261 AFKCRITGTVMMD---PVSLYTGTTCERAAIEAWLDRREKTDPETGVVLEDT 309 (1012)
Q Consensus 261 ~~~cpi~~~~m~d---Pv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~ 309 (1012)
-+.|.|++++|.| |++.+.|++|-..+|+.|-...+-.||.++..+..+
T Consensus 330 ~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 330 RLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 3669999999987 999999999999999999876557999998877643
No 283
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=70.95 E-value=92 Score=35.83 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=104.5
Q ss_pred chHHHHHHHHHHhccCCCCH---HHHHHHHhhccHHHHHHHhcCCCh------h-HHHHHHHHHHhccCCCCHHHHHHHH
Q 001796 737 KHDVQMAAAGLLANLPKSEL---SLTMKLIELDGLNAIINILKSGTM------E-AKENALSALFRFTDPTNLEAQRNVV 806 (1012)
Q Consensus 737 ~~~~~~~Aa~aL~nL~~~~~---~~~~~l~~~g~i~~Lv~lL~~~~~------~-~~~~a~~aL~~Ls~~~~~~~~~~i~ 806 (1012)
.++.+-+|.-....++.++. ..++.+.++-|.+-+-+++.+++. . -+.-++.+|..+|.. +++...=.
T Consensus 24 ~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~--pElAsh~~ 101 (698)
T KOG2611|consen 24 RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV--PELASHEE 101 (698)
T ss_pred ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC--hhhccCHH
Confidence 45666677766777766433 346678888889999999876531 2 466778888888874 55432222
Q ss_pred HcCCHHHHHHHHhcC-CHH------HHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhh
Q 001796 807 ERGVYPLLVNLLQIG-SIT------AKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLL 879 (1012)
Q Consensus 807 ~~g~i~~Lv~lL~s~-~~~------vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv 879 (1012)
--+.||.|...+..+ +++ +...+-.+|..++.. ..|. ..++
T Consensus 102 ~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~--------------------------e~G~------~~Li 149 (698)
T KOG2611|consen 102 MVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA--------------------------EAGL------MTLI 149 (698)
T ss_pred HHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC--------------------------Cchh------HHHH
Confidence 234699999999854 333 556677777777442 2222 6678
Q ss_pred hcCcchHHHHhccCCChHHHH-HHHHHHHHHhhccc-hhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhc
Q 001796 880 KANALPHLVKLLQGRVHATAY-EAIQTLSTLVQEGC-QQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFM 955 (1012)
Q Consensus 880 ~~gai~~Lv~lL~~~~~~v~~-~Al~aL~~L~~~~~-~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~ 955 (1012)
..|+++.+.++-...+...-. -|+..+..+...-. +++....+... |..+..=+...+.+.+...+.+|..++.
T Consensus 150 a~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 150 ASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred hcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 899999999875433322222 24444444333211 23333332221 2333332333344556666666665543
No 284
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.74 E-value=3.2e+02 Score=35.35 Aligned_cols=233 Identities=18% Similarity=0.215 Sum_probs=124.0
Q ss_pred HHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhc---cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHH
Q 001796 727 ALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELD---GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQR 803 (1012)
Q Consensus 727 ~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g---~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~ 803 (1012)
.++....+.+...+|.-+-.+|..++.... ...+.+.. ....|..-+++.....+.....+|..+-...+.+...
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s--~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~ 734 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPS--GEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCD 734 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHH
Confidence 334444555577888889888888887622 12222211 2223333344445556666666666665543334333
Q ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCc
Q 001796 804 NVVERGVYPLLVNLLQIGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANA 883 (1012)
Q Consensus 804 ~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~ga 883 (1012)
. +.. .||-++-.+...+...++.|-.+|..+..-... ...++ +. ....
T Consensus 735 ~-i~k-~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~---------------------~d~g~-----e~----~~~~ 782 (1176)
T KOG1248|consen 735 L-IPK-LIPEVILSLKEVNVKARRNAFALLVFIGAIQSS---------------------LDDGN-----EP----ASAI 782 (1176)
T ss_pred H-HHH-HHHHHHHhcccccHHHHhhHHHHHHHHHHHHhh---------------------hcccc-----cc----hHHH
Confidence 2 222 355555555777888999999999988420000 00111 00 0113
Q ss_pred chHHHHhcc----CCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch-Hh
Q 001796 884 LPHLVKLLQ----GRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS-KE 958 (1012)
Q Consensus 884 i~~Lv~lL~----~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~-~~ 958 (1012)
|...+..+. .+...++...+.|+..+..+ ..+......=.+-+..+.-++.+.+++++..|+..+..+... ++
T Consensus 783 lnefl~~Isagl~gd~~~~~as~Ivai~~il~e--~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGDSTRVVASDIVAITHILQE--FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 444444443 22333333346777777754 111111111113445555677799999999999999888764 33
Q ss_pred -hHhhhcccccchhhhhhhhcccCCchHHHHHHHHHHHHHh
Q 001796 959 -MVDTYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIER 998 (1012)
Q Consensus 959 -~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~ 998 (1012)
....+-. . .+-.++..++++...+|.++...|..|-+
T Consensus 861 ~~l~~~~~--~-LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 861 ECLSPHLE--E-LLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHhhhHH--H-HHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2221110 0 12222323346677889998888886644
No 285
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=70.61 E-value=1 Score=53.26 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=39.2
Q ss_pred CceecccccccCCCceec---CCCccccHHHHHHHHhcCCCCCCCCCcccCCC
Q 001796 260 NAFKCRITGTVMMDPVSL---YTGTTCERAAIEAWLDRREKTDPETGVVLEDT 309 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~---~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~ 309 (1012)
.+-.||+|..=+.|-.+. .|+|-||..||..|-.. ..|||.++..+...
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhee
Confidence 356799998888887765 78999999999999875 67899998776543
No 286
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=70.53 E-value=1.7e+02 Score=33.79 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=98.5
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHH-HHHHHHhccCCCcc
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIA-INLLFLFSHHEPEG 714 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a-~~~L~~ls~~~~~~ 714 (1012)
++..++..+....+ +-.++-|+++|..+|.+.+...... ..-+|..+++.-.+.++++...| -.++..++.+.|..
T Consensus 330 iL~~l~EvL~d~~~-~~~k~laLrvL~~ml~~Q~~~l~Ds--tE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSED-EIIKKLALRVLREMLTNQPARLFDS--TEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHccchh-hHHHHHHHHHHHHHHHhchHhhhch--HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 34455556655222 3478999999999998765432111 11235566666666666544444 46788888886654
Q ss_pred hHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHH--hhccHHHHHHHhcCCChhHHHHHHHHHHh
Q 001796 715 VVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLI--ELDGLNAIINILKSGTMEAKENALSALFR 792 (1012)
Q Consensus 715 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~--~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~ 792 (1012)
. |..+..++.+. +...-..+...+..+...-. ...+. =..+.|.+++.-.+.+..+|..|+-.|..
T Consensus 407 ~---------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~--~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 407 C---------IVNISPLILTA-DEPRAVAVIKMLTKLFERLS--AEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVA 474 (516)
T ss_pred H---------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcC--HHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHH
Confidence 3 23334444443 33333344444444443222 12222 24578888888888888999998888877
Q ss_pred ccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Q 001796 793 FTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAAL 832 (1012)
Q Consensus 793 Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~a 832 (1012)
+. ..+.....-|+|-.|-.+.---++..+-+|
T Consensus 475 mv--------~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 475 MV--------NRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred HH--------HHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 62 223334466777766444333344444333
No 287
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.39 E-value=36 Score=41.83 Aligned_cols=192 Identities=18% Similarity=0.148 Sum_probs=115.2
Q ss_pred cHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHc
Q 001796 506 YKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAA 585 (1012)
Q Consensus 506 i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 585 (1012)
+...+..+.++-..+|-.++..|.++......+..+...+++....++|.+.|+-+--+|...+..||.- ...
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPE 801 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cch
Confidence 3344455556667788899999999888777777788899999999999999988888888877777753 223
Q ss_pred CChHHHHHHhhcCCCCh--hHHHHHHHHHHHhhc-cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHH
Q 001796 586 GGIPQVLELMFSSHVPS--NIIVKCSEILEKLSS-DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALF 662 (1012)
Q Consensus 586 g~i~~Lv~lL~~~~~~~--~~~~~a~~~L~nLa~-~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~ 662 (1012)
..+|.|.+.-.+.+... ..+-..-+++.++.. -|. ++.. ..+..+..+++.++. ++.+.|..++.+|.
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge--l~~~-----y~~~Li~tfl~gvre--pd~~~RaSS~a~lg 872 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE--LVFK-----YKAVLINTFLSGVRE--PDHEFRASSLANLG 872 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc--HHHH-----HHHHHHHHHHHhcCC--chHHHHHhHHHHHH
Confidence 35677766433321111 111222355555553 110 0000 012345555555553 34456888888999
Q ss_pred HhccCchHHHHHHHHhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHhccCCCcch
Q 001796 663 RICKSEAELVKIAVVKANGVSLILSLLD-DTDSEVREIAINLLFLFSHHEPEGV 715 (1012)
Q Consensus 663 ~L~~~~~~~~~~~i~~~g~v~~Lv~ll~-~~~~~v~~~a~~~L~~ls~~~~~~~ 715 (1012)
++|.-.+..+...+. ..+..++.+.. ++...+|++|+-++..+-.+.+...
T Consensus 873 ~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 873 QLCQLLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HHHHHHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 888743321122221 12334444443 4567899999998888766544433
No 288
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=69.79 E-value=27 Score=43.00 Aligned_cols=171 Identities=15% Similarity=0.089 Sum_probs=91.9
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHhccCC
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD----TDSEVREIAINLLFLFSHHE 711 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~----~~~~v~~~a~~~L~~ls~~~ 711 (1012)
++..+..++.+..-+ ...|...|..+........ .. .+..+.+++.. .++.++..|+-.+..+....
T Consensus 396 av~~i~~~I~~~~~~---~~ea~~~l~~l~~~~~~Pt-~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT---DDEAAQLLASLPFHVRRPT-EE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHTT-S----HHHHHHHHHHHHHT------HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC---HHHHHHHHHHHHhhcCCCC-HH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 455556666554322 2345555555543321101 11 12344455543 34567777776665554321
Q ss_pred Ccc--------hHHhhhcCCChHHHHHhhc---CCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC--
Q 001796 712 PEG--------VVEYLLKPKRLEALVGFLE---NDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-- 778 (1012)
Q Consensus 712 ~~~--------~~~~l~~~~~i~~Lv~lL~---~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-- 778 (1012)
... ..........++.|...+. +..+.+.+..++.+|+|+.... .++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~-----------~i~~l~~~i~~~~~ 535 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPE-----------SIPVLLPYIEGKEE 535 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-----------GHHHHHTTSTTSS-
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCch-----------hhHHHHhHhhhccc
Confidence 100 0011122456777777775 3335577778899999997632 478888877766
Q ss_pred -ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHh
Q 001796 779 -TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG--SITAKARAAALIGT 835 (1012)
Q Consensus 779 -~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~--~~~vk~~Aa~aL~n 835 (1012)
+..+|-.|+.+|.++... .++. +.+.|..+..+. ++++|.+|...|-.
T Consensus 536 ~~~~~R~~Ai~Alr~~~~~-~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 536 VPHFIRVAAIQALRRLAKH-CPEK--------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp S-HHHHHHHHHTTTTGGGT--HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhc-CcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 567899999999988654 3431 346677777654 56788888777755
No 289
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=69.75 E-value=70 Score=36.62 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=76.0
Q ss_pred hhc-CCChHHHHHhhcCCCc--hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhc-CC---ChhHHHHHHHHHH
Q 001796 719 LLK-PKRLEALVGFLENDAK--HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILK-SG---TMEAKENALSALF 791 (1012)
Q Consensus 719 l~~-~~~i~~Lv~lL~~~~~--~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~-~~---~~~~~~~a~~aL~ 791 (1012)
+.+ ...+..|..++++... ..+-..|+.++..+..++|..-..+.++|.++.+++.+. .+ +.++.-..-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 344 3445555556666532 456677999999999999998888999999999999887 54 4566666777888
Q ss_pred hccCCCCHHHHHHHHHcCCHHHHHHHHhcC
Q 001796 792 RFTDPTNLEAQRNVVERGVYPLLVNLLQIG 821 (1012)
Q Consensus 792 ~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~ 821 (1012)
.||-+ .+-.+.+.+.+.++.+.+++.+.
T Consensus 181 AicLN--~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICLN--NRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhcC--HHHHHHHHhcChHHHHHHHhCCH
Confidence 88875 55567788889999998888754
No 290
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=68.41 E-value=26 Score=43.33 Aligned_cols=149 Identities=16% Similarity=0.123 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhc--CcHHHHHHhhcCCCHHHHHHHHHHHHHhccCC
Q 001796 634 EPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKA--NGVSLILSLLDDTDSEVREIAINLLFLFSHHE 711 (1012)
Q Consensus 634 ~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~--g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~ 711 (1012)
..+++.|++....... ..+..-+.+|.++-.+-+. +.+... ...|.|++.+.-++..+|..+..++..+-...
T Consensus 866 ~~ivP~l~~~~~t~~~--~~K~~yl~~LshVl~~vP~---~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPG--SQKHNYLEALSHVLTNVPK---QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HhhHHHHHHHhccCCc--cchhHHHHHHHHHHhcCCH---HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 4578888888874332 3677888888887665332 222221 23567788888889999999888887755442
Q ss_pred CcchHHhhhcCCChHHHHHhhcCCCc--hHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCCChhHHHHHHHH
Q 001796 712 PEGVVEYLLKPKRLEALVGFLENDAK--HDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSGTMEAKENALSA 789 (1012)
Q Consensus 712 ~~~~~~~l~~~~~i~~Lv~lL~~~~~--~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~a 789 (1012)
+.-.... -...+|.++.+=++.++ .-++..|..+|..|...-|...-.-.+..++..|...|.+...-+|+.|+.+
T Consensus 941 ~tL~t~~--~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 941 ETLQTEH--LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred cccchHH--HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 2221111 12345555554444432 5677888888888877444322222244567777777776666677777665
No 291
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=68.19 E-value=16 Score=30.81 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc-cCChhhHhHHHHHHHHHhchHhh
Q 001796 899 AYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT-WGTDSLKEEALGFLEKVFMSKEM 959 (1012)
Q Consensus 899 ~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~-s~~~~~~~~a~~aL~~l~~~~~~ 959 (1012)
.+.|+.|++++++ .+.|...+.+.+.++.++++.. ++...+|--|-.+|.-+++..+-
T Consensus 4 lKaaLWaighIgs---s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G 62 (73)
T PF14668_consen 4 LKAALWAIGHIGS---SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG 62 (73)
T ss_pred HHHHHHHHHhHhc---ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH
Confidence 4679999999998 4889999988899999999877 67888999999999999987653
No 292
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=67.93 E-value=4 Score=34.17 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=27.0
Q ss_pred ceec-CCCccccHHHHHHHHhcCCCCCCCCCccc
Q 001796 274 PVSL-YTGTTCERAAIEAWLDRREKTDPETGVVL 306 (1012)
Q Consensus 274 Pv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l 306 (1012)
||+. -|.|.|---||.+|++. ...||..+|+.
T Consensus 48 ~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w 80 (88)
T COG5194 48 PVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTW 80 (88)
T ss_pred eEEEEecchHHHHHHHHHHHhh-CCCCCCCCcee
Confidence 3444 78999999999999987 67899999875
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.38 E-value=42 Score=41.17 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=36.5
Q ss_pred CCCceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCc
Q 001796 258 PLNAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGV 304 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~ 304 (1012)
|...-.|..|.-.+.=|++- .|||.|-+.|.+ .+...||+|.-
T Consensus 837 i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 837 IFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 44557899999999999887 999999999987 45678999965
No 294
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=67.31 E-value=10 Score=29.78 Aligned_cols=33 Identities=12% Similarity=0.314 Sum_probs=22.1
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHHHhc------CCCCCCCCCc
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDR------REKTDPETGV 304 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~------~~~~cp~~~~ 304 (1012)
+.|.||.|.+ .|+...+.+++.. ....||.|..
T Consensus 1 ~~f~CP~C~~------------~~~~~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGK------------GFSESSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCC------------ccCHHHHHHHHHhHCcCCCCCccCCCchh
Confidence 4799999776 4556666666543 2346999965
No 295
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=66.62 E-value=89 Score=38.10 Aligned_cols=169 Identities=20% Similarity=0.154 Sum_probs=90.7
Q ss_pred cHHHHHHHhcCCChhH--HHHHHHHHHhc-cCCCCHHHHHHHHHcCCHHHHHHHHhcC----CHHHHHHHHHHHHhhccC
Q 001796 767 GLNAIINILKSGTMEA--KENALSALFRF-TDPTNLEAQRNVVERGVYPLLVNLLQIG----SITAKARAAALIGTLSTS 839 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~--~~~a~~aL~~L-s~~~~~~~~~~i~~~g~i~~Lv~lL~s~----~~~vk~~Aa~aL~nLs~~ 839 (1012)
++..+.+.+.++.-.. ...+...+... ..+ +++ .+..+..++.+. .+.++..|.-+++++...
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~P-t~~---------~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~ 427 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYP-TEE---------ILKALFELAESPEVQKQPYLRESALLAYGSLVRR 427 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcC-CHH---------HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 5666777777764322 23333333333 343 344 345566666643 556788888888877321
Q ss_pred CcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccC----CChHHHHHHHHHHHHHhhccch
Q 001796 840 SPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQG----RVHATAYEAIQTLSTLVQEGCQ 915 (1012)
Q Consensus 840 ~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~----~~~~v~~~Al~aL~~L~~~~~~ 915 (1012)
.|.. ...|. .+ +-...++.|.+.|.. ++...+..++.||+|+...
T Consensus 428 ----------------------~c~~-~~~~~----~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~--- 476 (574)
T smart00638 428 ----------------------YCVN-TPSCP----DF-VLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP--- 476 (574)
T ss_pred ----------------------HhcC-CCCCC----hh-hHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh---
Confidence 1211 11110 11 123466777776643 3444556689999998873
Q ss_pred hhhhHHhhhcCCchHHHHHhc---cCChhhHhHHHHHHHHHhch-HhhHhhhcccccchhhhhhhhcccCCchHHHHHHH
Q 001796 916 QRGVNVLHQEEAIKPTLEILT---WGTDSLKEEALGFLEKVFMS-KEMVDTYGSSARLLLVPLTSRNVHEDGSLERKAAK 991 (1012)
Q Consensus 916 ~~~~~~i~~~~~v~~L~~ll~---s~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~ 991 (1012)
..++.+..++. ..++.+|..|+++|.++... ++..+. .+..+.. ..+.++++|-.|..
T Consensus 477 ----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~-------~l~~i~~-n~~e~~EvRiaA~~ 538 (574)
T smart00638 477 ----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQE-------VLLPIYL-NRAEPPEVRMAAVL 538 (574)
T ss_pred ----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHH-------HHHHHHc-CCCCChHHHHHHHH
Confidence 23334444443 33567899999999988743 332221 2333331 22345566666665
Q ss_pred HHH
Q 001796 992 VLS 994 (1012)
Q Consensus 992 ~L~ 994 (1012)
+|.
T Consensus 539 ~lm 541 (574)
T smart00638 539 VLM 541 (574)
T ss_pred HHH
Confidence 554
No 296
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=65.16 E-value=18 Score=37.89 Aligned_cols=80 Identities=16% Similarity=0.314 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcccccchhhHhhhcCChH-------HHHhhhc-CCChhHHHHHHHHHHHhcCCCchH--HHHHHcCCh
Q 001796 519 SSRILMMKALLSMELVDSNLELLGKEGIIP-------PLLGLVG-SGNFQSKELSLSVLVKLSGCSKNR--ELISAAGGI 588 (1012)
Q Consensus 519 ~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~-------~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~g~i 588 (1012)
.-|..|+.+|++|+..+.|...+..-+-.+ .|+++|. .+++..++-|...|.+|+..++.. ....+.++|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 458899999999999999998888765444 4445553 356789999999999999876653 333567999
Q ss_pred HHHHHHhhcC
Q 001796 589 PQVLELMFSS 598 (1012)
Q Consensus 589 ~~Lv~lL~~~ 598 (1012)
..|+.++...
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 297
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=65.12 E-value=10 Score=38.57 Aligned_cols=76 Identities=16% Similarity=0.194 Sum_probs=58.6
Q ss_pred hhhhhcCcchHHHHhccC---------CChHHHHHHHHHHHHHhhccchhhhhHHh-hhcCCchHHHHHhccCChhhHhH
Q 001796 876 FCLLKANALPHLVKLLQG---------RVHATAYEAIQTLSTLVQEGCQQRGVNVL-HQEEAIKPTLEILTWGTDSLKEE 945 (1012)
Q Consensus 876 ~~lv~~gai~~Lv~lL~~---------~~~~v~~~Al~aL~~L~~~~~~~~~~~~i-~~~~~v~~L~~ll~s~~~~~~~~ 945 (1012)
..+++.||+..|+++|.. .+.....+++.+|..|... ..|...+ ...+++..|+..+.+.+..++..
T Consensus 101 ~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~---~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~ 177 (187)
T PF06371_consen 101 QEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNT---KYGLEAVLSHPDSVNLIALSLDSPNIKTRKL 177 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSS---HHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHcc---HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence 346678999999998853 2335677799999999884 7787765 55677999999999999999999
Q ss_pred HHHHHHHHh
Q 001796 946 ALGFLEKVF 954 (1012)
Q Consensus 946 a~~aL~~l~ 954 (1012)
+..+|..+|
T Consensus 178 ~leiL~~lc 186 (187)
T PF06371_consen 178 ALEILAALC 186 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998876
No 298
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=64.89 E-value=16 Score=39.54 Aligned_cols=131 Identities=13% Similarity=0.134 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHhhcC-CcHHHHHHHhcC----ChHHHHHHHHHHHhccccc-chh-hHhhhcCC
Q 001796 474 PVRESAECAEKILQQLFDVDEENFCRAAKSG-WYKPLIDRIIQG----AESSRILMMKALLSMELVD-SNL-ELLGKEGI 546 (1012)
Q Consensus 474 ~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g-~i~~Lv~lL~~~----~~~~~~~a~~aL~~Ls~~~-~~~-~~i~~~g~ 546 (1012)
.....+.-+++++.|+..........+...+ .+...+..+... +..++..+++.+.|++..- .++ ..=.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3556788899999999865544444444444 444444444443 5778999999999998821 111 11111223
Q ss_pred hHHHHhhhc-C-CChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhH
Q 001796 547 IPPLLGLVG-S-GNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNI 604 (1012)
Q Consensus 547 i~~Lv~lL~-~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~ 604 (1012)
+..+++.+. . .++++...++.+|++|...+.........=.+...+.-.........+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri 261 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRI 261 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHH
Confidence 555556332 2 578999999999999997776666665543344444444333333333
No 299
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.30 E-value=1.4e+02 Score=34.71 Aligned_cols=139 Identities=18% Similarity=0.144 Sum_probs=81.5
Q ss_pred hcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccH
Q 001796 689 LDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGL 768 (1012)
Q Consensus 689 l~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i 768 (1012)
..+++..++..|+..|.+.+...|+..... ....+..++.-|-++.+.+++-.|+.+|..+..--. ..=+..+.+
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~---~~~l~~~~l 341 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKAS---NDDLESYLL 341 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhh---hcchhhhch
Confidence 345677899999999999887766654331 234556666666666678888888888876643111 111223333
Q ss_pred H---HHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHH---HcCCHHHHHHHHhcCCHHHHHHHHHHH
Q 001796 769 N---AIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVV---ERGVYPLLVNLLQIGSITAKARAAALI 833 (1012)
Q Consensus 769 ~---~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~---~~g~i~~Lv~lL~s~~~~vk~~Aa~aL 833 (1012)
+ .+..+..+.+++++.+|...+..|+.-....++..+. ..++.|.+.. +.+.+|.+-.++-..+
T Consensus 342 ~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~d~~p~va~ACr~~~ 411 (533)
T KOG2032|consen 342 NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQDPNPYVARACRSEL 411 (533)
T ss_pred hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eCCCChHHHHHHHHHH
Confidence 3 4555677888889988877766665332222222222 3344444444 4566776644433333
No 300
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=61.98 E-value=2.7e+02 Score=31.23 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=111.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcC--CChHHHHHhhcCCC----c--------hHHHHHHHH-
Q 001796 682 VSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKP--KRLEALVGFLENDA----K--------HDVQMAAAG- 746 (1012)
Q Consensus 682 v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~--~~i~~Lv~lL~~~~----~--------~~~~~~Aa~- 746 (1012)
+..+...+...+..+...|+.+|..+....+......+... -..+.|-+++.... . ..++.+...
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 66777888888888888999999998873343333333332 22344555553211 1 156666554
Q ss_pred HHhccCCCCHHHHHHHHh-hccHHHHHHHhcCCChhHHHHHHHHHHh-ccCCC--CHHHHHHHHHcCCHHHHHHHHhcCC
Q 001796 747 LLANLPKSELSLTMKLIE-LDGLNAIINILKSGTMEAKENALSALFR-FTDPT--NLEAQRNVVERGVYPLLVNLLQIGS 822 (1012)
Q Consensus 747 aL~nL~~~~~~~~~~l~~-~g~i~~Lv~lL~~~~~~~~~~a~~aL~~-Ls~~~--~~~~~~~i~~~g~i~~Lv~lL~s~~ 822 (1012)
+|..|...++..+..+++ .+.+..+.+-|..+++++....+.+|.. +.... ....+..+.....+..|+.+-...+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 566677778887877774 5677888888888888899989888885 33321 1333455556667888888777666
Q ss_pred H----HHHHHHHHHHHhhccCCcCCccCCCCCccccc
Q 001796 823 I----TAKARAAALIGTLSTSSPKFTDMPESAGCWCF 855 (1012)
Q Consensus 823 ~----~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~ 855 (1012)
+ .+...+-.-|..+..+.. ....+...+||..
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~-~Gv~f~d~~~~~~ 253 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK-HGVCFPDNGWYPR 253 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC-cccccCCCCcCcC
Confidence 6 788888888888755332 2223333444443
No 301
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=61.82 E-value=3.5 Score=34.19 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=33.2
Q ss_pred ceecccccccCCC-ceec-CCCccccHHHHHHHHhcC--CCCCCCCCcccC
Q 001796 261 AFKCRITGTVMMD-PVSL-YTGTTCERAAIEAWLDRR--EKTDPETGVVLE 307 (1012)
Q Consensus 261 ~~~cpi~~~~m~d-Pv~~-~~g~t~~r~~i~~~~~~~--~~~cp~~~~~l~ 307 (1012)
+=+||=|.-.=.| |.++ -|.|.|-+-||.+|++.. ...||.|||...
T Consensus 31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 4455555544444 4454 889999999999999842 347999998753
No 302
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.48 E-value=2.3e+02 Score=33.02 Aligned_cols=73 Identities=10% Similarity=0.047 Sum_probs=45.2
Q ss_pred hcCCcHHHHHHH----hcCChHHHHHHHHHHHhcccc-cchhhHhhhcCChHHHHhhh-cCCChhHHHHHHHHHHHhcCC
Q 001796 502 KSGWYKPLIDRI----IQGAESSRILMMKALLSMELV-DSNLELLGKEGIIPPLLGLV-GSGNFQSKELSLSVLVKLSGC 575 (1012)
Q Consensus 502 ~~g~i~~Lv~lL----~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~ 575 (1012)
+.|.+..++..+ .+++...|..|+..|.+.+.. ++-+..... -.+..++.-| ...+.++...+..+|..+...
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 456666655555 345667888999999999885 333333322 2344445444 444577888888888776643
No 303
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=60.50 E-value=46 Score=34.25 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHH
Q 001796 655 KPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD-----TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALV 729 (1012)
Q Consensus 655 ~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-----~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv 729 (1012)
.+|+..|-.++++++ .+..+.++..---+..++.. ..+.+|..+++.++.+...++......+..+..+|.++
T Consensus 118 cnaL~lLQclaShPe--tk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL 195 (315)
T COG5209 118 CNALNLLQCLASHPE--TKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL 195 (315)
T ss_pred HHHHHHHHHHhcCcc--hheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence 567777777888877 34666665442223344332 24568999999999998887777777888899999999
Q ss_pred HhhcCCCchHHHHHHHHHHhccCCCCHHH---HHHHHhhc----cHHHHHH-HhcCCChhHHHHHHHHHHhccCCCCHHH
Q 001796 730 GFLENDAKHDVQMAAAGLLANLPKSELSL---TMKLIELD----GLNAIIN-ILKSGTMEAKENALSALFRFTDPTNLEA 801 (1012)
Q Consensus 730 ~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~---~~~l~~~g----~i~~Lv~-lL~~~~~~~~~~a~~aL~~Ls~~~~~~~ 801 (1012)
+++..++ +--+..|+-++..+-.++... ++.+-+-- .+..++. +...++.+..+.++++-.+++.. ++.
T Consensus 196 rIme~gS-ElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~--p~a 272 (315)
T COG5209 196 RIMELGS-ELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK--PHA 272 (315)
T ss_pred HHHHhhh-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC--HhH
Confidence 9998873 344555666666655544432 22222211 2222222 34456677778888888888763 665
Q ss_pred HHH
Q 001796 802 QRN 804 (1012)
Q Consensus 802 ~~~ 804 (1012)
|..
T Consensus 273 R~l 275 (315)
T COG5209 273 RAL 275 (315)
T ss_pred HHH
Confidence 543
No 304
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.29 E-value=3.9e+02 Score=32.52 Aligned_cols=153 Identities=14% Similarity=0.185 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHhhH------HHHHHHHH
Q 001796 33 KESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCR------YIVNEIQE 106 (1012)
Q Consensus 33 k~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~~~skl~l~~~~~------~~~~~~~~ 106 (1012)
++...+..+++..+.--++||...++ .|.-...|+.-+..|..+..+.+.+... +.++..+ .+...+..
T Consensus 181 ~~~~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~ 255 (563)
T TIGR00634 181 QQKEQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGE 255 (563)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHH
Confidence 44557788999999999999976553 3444666777777777777777777433 3333332 35556655
Q ss_pred HHHHHHHHhhhccccch-hcchHHHHHHHHHHHHHHHhhh--hhchHHHHHHHhhhhhhccccchhhhHHHHHHHHHhCC
Q 001796 107 VTRNIGRSLASLSLANT-EVLSEISDQMNRLQNEMQRVEF--KASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGV 183 (1012)
Q Consensus 107 ~~~~~~~~l~~~p~~~~-~~~~~v~e~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 183 (1012)
+.+.+...++. .+..+ +.-.++..+++.+..+++++.- ..||.++- .+.. -...+..+.++.|.
T Consensus 256 ~~~~l~~~~d~-~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~-ele~-----------RL~~l~~LkrKyg~ 322 (563)
T TIGR00634 256 AQLALASVIDG-SLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLN-EIEE-----------RLAQIKRLKRKYGA 322 (563)
T ss_pred HHHHHHHhhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH-HHHH-----------HHHHHHHHHHHhCC
Confidence 55555553110 00000 0111222233333333333222 22222211 1111 01345566666674
Q ss_pred CCChhHHHHHHHHHHHHHHHHH
Q 001796 184 PVEPSEISKELASFRREKEEAA 205 (1012)
Q Consensus 184 ~~~~~~~~~E~~~l~~~~~~~~ 205 (1012)
+..++......+++++....
T Consensus 323 --s~e~l~~~~~~l~~eL~~l~ 342 (563)
T TIGR00634 323 --SVEEVLEYAEKIKEELDQLD 342 (563)
T ss_pred --CHHHHHHHHHHHHHHHHHHh
Confidence 57777777777777775543
No 305
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=60.03 E-value=2.3e+02 Score=33.50 Aligned_cols=251 Identities=16% Similarity=0.098 Sum_probs=127.1
Q ss_pred hhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchhHHHH
Q 001796 559 FQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELEPIVT 638 (1012)
Q Consensus 559 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~~~v~ 638 (1012)
.++|..+...|..+...++.+....+ ..+...+.....+.. ...-+.+|..|+.+|+....-+ .++.+
T Consensus 43 ~e~R~~~~~ll~~~i~~~~~~~~~~R----~~fF~~I~~~~~~~d-~~~~l~aL~~LT~~Grdi~~~~-------~~i~~ 110 (464)
T PF11864_consen 43 SEARRAALELLIACIKRQDSSSGLMR----AEFFRDISDPSNDDD-FDLRLEALIALTDNGRDIDFFE-------YEIGP 110 (464)
T ss_pred HHHHHHHHHHHHHHHHccccccHHHH----HHHHHHHhcCCCchh-HHHHHHHHHHHHcCCcCchhcc-------cchHH
Confidence 57899999999888876655322221 112233343333322 2556778888888776652211 12333
Q ss_pred HHHHHHhccC-------------------------CChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCC-
Q 001796 639 NLLTLQQNFN-------------------------SSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDT- 692 (1012)
Q Consensus 639 ~Ll~ll~~~~-------------------------~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~- 692 (1012)
.|...+.... .....-...+..+.|+.+++.....+.. -.+.+..++.++...
T Consensus 111 ~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~-i~~lv~~i~~iC~~Ts 189 (464)
T PF11864_consen 111 FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDE-ISSLVDQICTICKSTS 189 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHHHHhccC
Confidence 3333332100 0111233455555666654322111111 123455566665443
Q ss_pred CHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcC-CCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHH
Q 001796 693 DSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN-DAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAI 771 (1012)
Q Consensus 693 ~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~-~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~L 771 (1012)
++...+.|+.++..+...+. +=.+.++.++..|.+ -...+....+-.++.||...... .-++..|
T Consensus 190 ~~~di~~~L~vldaii~y~~-------iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g-------~~~i~~L 255 (464)
T PF11864_consen 190 SEDDIEACLSVLDAIITYGD-------IPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLG-------HSAIRTL 255 (464)
T ss_pred cHHHHHHHHHHHHHHHHcCc-------CChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccH-------HHHHHHH
Confidence 44455777777766543211 112234444444421 11124455566778888764322 1246778
Q ss_pred HHHhcCC------ChhHHHHHHHHHHhccCCCCHHHHHHHHHc--CCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 772 INILKSG------TMEAKENALSALFRFTDPTNLEAQRNVVER--GVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 772 v~lL~~~------~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~--g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
..+|.++ +..+.++|+..+..+......+....+.-. -++|.|...++.+++.+-......+.++
T Consensus 256 ~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l 328 (464)
T PF11864_consen 256 CDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL 328 (464)
T ss_pred HHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence 8888422 335677888888877654311111111111 2678888888877776666666666665
No 306
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.29 E-value=48 Score=33.02 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=48.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhh--cCCcHHHHHHHhcC-ChHHHHHHHHHHHhccc
Q 001796 463 GILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAK--SGWYKPLIDRIIQG-AESSRILMMKALLSMEL 533 (1012)
Q Consensus 463 ~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~--~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~ 533 (1012)
.+..+..+|++++...+..++..+...+..++ ...+.+ .-.+..|+..|++. +..++..++.+|..+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999888875432 233323 33577888888765 45567777777776654
No 307
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=58.63 E-value=1.1e+02 Score=33.06 Aligned_cols=154 Identities=21% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcC--ChHHHHhhhcC----CChhHHHHHHHHHHHhcCCCchHHHHH
Q 001796 510 IDRIIQGAESSRILMMKALLSMELVDSNLELLGKEG--IIPPLLGLVGS----GNFQSKELSLSVLVKLSGCSKNRELIS 583 (1012)
Q Consensus 510 v~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 583 (1012)
...+.+-+.+.+..+...++-+..++..-..+...+ ....+..++.. ..+..+..+++++.|+-.++.++..+.
T Consensus 69 ~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~ 148 (268)
T PF08324_consen 69 LKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLL 148 (268)
T ss_dssp HHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHH
Confidence 334444445555666666655555555544443322 23444444432 346788899999999999999998887
Q ss_pred HcC--ChHHHHHHhhcCCC--ChhHHHHHHHHHHHhhc---cCccceecccCCccchhHHHHHHHHHHhccCCChhhHHH
Q 001796 584 AAG--GIPQVLELMFSSHV--PSNIIVKCSEILEKLSS---DGIKFLVDEKGNRLELEPIVTNLLTLQQNFNSSYNVRKP 656 (1012)
Q Consensus 584 ~~g--~i~~Lv~lL~~~~~--~~~~~~~a~~~L~nLa~---~~~~~~~~~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~ 656 (1012)
... .+...+..+..... ....+..++..+.|++. ..+. +. -.....+..++..+.....+++....
T Consensus 149 ~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~---~~----~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 149 SHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRS---DE----EWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp CTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS----C----CHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred hcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCC---Ch----HHHHHHHHHHHHHhccccCCHHHHHH
Confidence 643 33333333332211 34456777788889986 1111 00 01122455555645544456789999
Q ss_pred HHHHHHHhccCchH
Q 001796 657 ALRALFRICKSEAE 670 (1012)
Q Consensus 657 al~aL~~L~~~~~~ 670 (1012)
++.+|.++...++.
T Consensus 222 ~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 222 LLVALGTLLSSSDS 235 (268)
T ss_dssp HHHHHHHHHCCSHH
T ss_pred HHHHHHHHhccChh
Confidence 99999999876654
No 308
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=57.95 E-value=1.4e+02 Score=37.72 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=64.8
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc-cc-chhh
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL-VD-SNLE 539 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~-~~-~~~~ 539 (1012)
+..|.+..-+.....+.++.+..++...+.. ..-...++.++..++.+++..+..+...+..... .+ .+..
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 3455555555555555665555555544321 1123345666777788888887776666654433 22 2222
Q ss_pred HhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcC
Q 001796 540 LLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSG 574 (1012)
Q Consensus 540 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 574 (1012)
.-.-.+.+|.++....+.+.+++.+|..++..+..
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 22235678888888888889999999988877753
No 309
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=57.31 E-value=2.1e+02 Score=30.27 Aligned_cols=126 Identities=19% Similarity=0.240 Sum_probs=78.6
Q ss_pred CChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcH
Q 001796 428 DPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYK 507 (1012)
Q Consensus 428 ~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~ 507 (1012)
++..+...+..|-.++.++. . ...-++..|+.+.+.+..+.+.-+...+..+...++... +.+.
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-~---------~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~ 77 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-V---------CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQ 77 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-c---------chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHH
Confidence 45677788888888887651 1 112345666667777666666677777777765543222 3444
Q ss_pred HHHHHH--h------cC--ChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhh-cCCChhHHHHHHHHHHHhc
Q 001796 508 PLIDRI--I------QG--AESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLV-GSGNFQSKELSLSVLVKLS 573 (1012)
Q Consensus 508 ~Lv~lL--~------~~--~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls 573 (1012)
.++..+ + ++ ..+.....+..+..++...+++. ...++.+...| .+.++.++..++.+|..|+
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 444441 1 11 22344455567777777544422 33578888888 6777888999999999998
No 310
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=56.40 E-value=47 Score=29.82 Aligned_cols=69 Identities=13% Similarity=0.015 Sum_probs=54.5
Q ss_pred hhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHH
Q 001796 501 AKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVL 569 (1012)
Q Consensus 501 ~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 569 (1012)
...+.+..|+++....+...+..+...|..+..++.....+.+-|++..|-++-...++..+...-.++
T Consensus 27 ~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 27 KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 356677888888888877788899999999999999999999999999988776655666555544444
No 311
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=55.96 E-value=53 Score=40.82 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=114.4
Q ss_pred HHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCH--HHHHHHHhcCCH
Q 001796 747 LLANLPKSELSLTMKLIELDGLNAIINILKSG-TMEAKENALSALFRFTDPTNLEAQRNVVERGVY--PLLVNLLQIGSI 823 (1012)
Q Consensus 747 aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i--~~Lv~lL~s~~~ 823 (1012)
+|++....++..+..+++.|++..+.+.++.- ....+..+.+.+.+++... +.+........+ ..+-.++..-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~--~~~~~~~~~~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVL--ELRELLMIFEFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHhhcch
Confidence 89999999999999999999999999999854 5678999999999998652 111111111111 233334444333
Q ss_pred -HHHHHHHHHHHhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchH-HHHhccC-CChHHHH
Q 001796 824 -TAKARAAALIGTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPH-LVKLLQG-RVHATAY 900 (1012)
Q Consensus 824 -~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~-Lv~lL~~-~~~~v~~ 900 (1012)
+.-..|+..|+.+-.+++. ...-+.|.|...-.....+.....+ ....-...+.+ +..++.. ..++.+-
T Consensus 572 ~ersY~~~siLa~ll~~~~~---~~~~~~r~~~~~~l~e~i~~~~~~~-----~~~~~~~~f~~~~~~il~~s~~~g~~l 643 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEK---TTECVFRNSVNELLVEAISRWLTSE-----IRVINDRSFFPRILRILRLSKSDGSQL 643 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCc---CccccchHHHHHHHHHHhhccCccc-----eeehhhhhcchhHHHHhcccCCCchHH
Confidence 6677888888888666553 1111111111100000000000000 11111223333 4455543 4566777
Q ss_pred HHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc-cCChhhHhHHHHHHHHH
Q 001796 901 EAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT-WGTDSLKEEALGFLEKV 953 (1012)
Q Consensus 901 ~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~-s~~~~~~~~a~~aL~~l 953 (1012)
-|+.++.++... .++..+.+.+.++++.+.++-. +....+++.+...+.+.
T Consensus 644 Wal~ti~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 695 (699)
T KOG3665|consen 644 WALWTIKNVLEQ--NKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC 695 (699)
T ss_pred HHHHHHHHHHHc--ChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence 799999999975 5667888888899888877533 22455555655555443
No 312
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=55.63 E-value=2.9e+02 Score=32.84 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcch
Q 001796 636 IVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGV 715 (1012)
Q Consensus 636 ~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~ 715 (1012)
.+..+++-+.+ .+..++..++.+|.-+.-.-.+ + ....-.|.+..|.+-+-+..+.+|..|+.+|..+-.....+.
T Consensus 92 ~~~h~lRg~es--kdk~VR~r~lqila~~~d~v~e-I-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 92 TFYHLLRGTES--KDKKVRKRSLQILALLSDVVRE-I-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHhcccC--cchhHHHHHHHHHHHHHHhcch-H-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 33444443333 2356888888888777543221 1 233444556666666667778899999999998764432222
Q ss_pred HHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCC
Q 001796 716 VEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSE 755 (1012)
Q Consensus 716 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~ 755 (1012)
......|+.++++....+++..| |.|+..++
T Consensus 168 ------n~~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 168 ------NRIVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred ------HHHHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 22345677788887677888766 44555433
No 313
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=55.11 E-value=4.9 Score=48.18 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=48.7
Q ss_pred CceecccccccCCCceecCCCccccHHHHHHHHh--cCCCCCCCCCcccCCCCCccCHHHHHHHHH
Q 001796 260 NAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLD--RREKTDPETGVVLEDTSLRSNSPLRQSIEE 323 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~--~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~ 323 (1012)
.++.||||.+...+|+.+.|-|.||+.|+-.-|. .+...||.|+.........--+.-.+++++
T Consensus 20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe 85 (684)
T KOG4362|consen 20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE 85 (684)
T ss_pred hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence 4788999999999999999999999999988554 345679999866655444444445566653
No 314
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=54.93 E-value=3.6 Score=52.09 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=38.7
Q ss_pred CceecccccccCC-CceecCCCccccHHHHHHHHhcCCCCCCCCC
Q 001796 260 NAFKCRITGTVMM-DPVSLYTGTTCERAAIEAWLDRREKTDPETG 303 (1012)
Q Consensus 260 ~~~~cpi~~~~m~-dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~ 303 (1012)
..+.|+||+++|+ -=-+.-|||-||-.|+.-|+.. +..||.|+
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence 5679999999999 6677799999999999999987 77899986
No 315
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=53.48 E-value=2.4e+02 Score=30.49 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=49.7
Q ss_pred cCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhc
Q 001796 503 SGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLS 573 (1012)
Q Consensus 503 ~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 573 (1012)
...+..|+.+|.++....|...+..|..+-..-+.+.. ...+.+.++.++|.++ ....|+.+|.+.-
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~---~~~eAL~VLd~~v 253 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTD---LWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCc---cHHHHHHHHHHHH
Confidence 44566788999999999999999999988775555444 4566899999999754 3456666665543
No 316
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=53.47 E-value=39 Score=32.76 Aligned_cols=72 Identities=18% Similarity=0.156 Sum_probs=62.0
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcc
Q 001796 767 GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI-GSITAKARAAALIGTLST 838 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~vk~~Aa~aL~nLs~ 838 (1012)
++..|.+-+.++++.++-.|+..|-.+..+-.......+...+++..|+.++.. .++.|+..+...+...+.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 466777788889999999999999998887667778888899999999999998 688999999999988754
No 317
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=53.00 E-value=1.9e+02 Score=34.94 Aligned_cols=164 Identities=10% Similarity=0.090 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHH
Q 001796 430 SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPL 509 (1012)
Q Consensus 430 ~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~L 509 (1012)
..+-.|+.+|+-+.++.+.. +.....-+....+..++..++ .++..+.-+++.|.|+..+ +..+..+... ...+
T Consensus 559 ~~~fPalDilRl~v~h~~~~--s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i 632 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSN--SLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESI 632 (745)
T ss_pred HHhhhHHHHHHHHHhccchh--hhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHH
Confidence 34556677777766654321 110010112235566666666 5677888899999999855 5555555433 2222
Q ss_pred HHHH---hc-CChHHHHHHHHHHHhccc--ccchhhHhhhcCChHHHHhhhcC-----CChhHHHHHHHHHHHhcCCCch
Q 001796 510 IDRI---IQ-GAESSRILMMKALLSMEL--VDSNLELLGKEGIIPPLLGLVGS-----GNFQSKELSLSVLVKLSGCSKN 578 (1012)
Q Consensus 510 v~lL---~~-~~~~~~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~ 578 (1012)
...+ ++ .+..+++..++...|++. ...+- +.|..+.+..++.. .+-+.....+.+|.+|+..+.+
T Consensus 633 ~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~ 708 (745)
T KOG0301|consen 633 LDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS 708 (745)
T ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH
Confidence 2222 22 235566666666666554 22221 15566666555532 2234666788899999999989
Q ss_pred HHHHHHcCChHHHHHHhhcCCCChh
Q 001796 579 RELISAAGGIPQVLELMFSSHVPSN 603 (1012)
Q Consensus 579 ~~~i~~~g~i~~Lv~lL~~~~~~~~ 603 (1012)
..++...-.+..++.-+++......
T Consensus 709 ~~~~A~~~~v~sia~~~~~~~~~~~ 733 (745)
T KOG0301|consen 709 VIQLAKNRSVDSIAKKLKEAVSNPS 733 (745)
T ss_pred HHHHHHhcCHHHHHHHHHHhccCch
Confidence 9999888888999988887755543
No 318
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=52.33 E-value=31 Score=33.37 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=20.9
Q ss_pred cchHHHHhccCCChHHHHHHHHHHHHHh
Q 001796 883 ALPHLVKLLQGRVHATAYEAIQTLSTLV 910 (1012)
Q Consensus 883 ai~~Lv~lL~~~~~~v~~~Al~aL~~L~ 910 (1012)
-|.+|+++|.+.+..+...|+.+|.+-.
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 5889999999889999999999998755
No 319
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=51.26 E-value=66 Score=39.64 Aligned_cols=168 Identities=18% Similarity=0.118 Sum_probs=87.9
Q ss_pred ccccccccccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCC----CHHHHHHHHHHHHHhhcCC
Q 001796 418 WDHIVPCLGRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGP----VRESAECAEKILQQLFDVD 493 (1012)
Q Consensus 418 i~~lv~lL~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~A~~~L~~La~~~ 493 (1012)
+..+..++.++......|+..|..+......+ ....+..+..+++++ +..++..|.-.+..+....
T Consensus 397 v~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~P----------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTDDEAAQLLASLPFHVRRP----------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHTT-S-HHHHHHHHHHHHHT---------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCC----------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 44445555443333344555555554332111 113455555666542 3345555555554443211
Q ss_pred hh---------hHHHHhhcCCcHHHHHHHh----cCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCC---
Q 001796 494 EE---------NFCRAAKSGWYKPLIDRII----QGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSG--- 557 (1012)
Q Consensus 494 ~~---------~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~--- 557 (1012)
.. ....-....+++.|...|. .++.+.+..++.+|+|+.. ...++.|...+...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhcccc
Confidence 11 1122334456777777776 3456778888999998754 34678888877665
Q ss_pred ChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHH
Q 001796 558 NFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEIL 612 (1012)
Q Consensus 558 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L 612 (1012)
...++..|+.+|..++.....+ +.+.|..++.+...+..++..|..+|
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 4678899999999886543222 35678888888777766544444433
No 320
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=51.23 E-value=82 Score=30.04 Aligned_cols=72 Identities=19% Similarity=0.123 Sum_probs=60.1
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc---CCHHHHHHHHHHHHhhcc
Q 001796 767 GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI---GSITAKARAAALIGTLST 838 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s---~~~~vk~~Aa~aL~nLs~ 838 (1012)
++..|-.-|+++++.++..|+.+|-.+..+-.......+....++..|+.++.. .++.|+..+...+.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467778889999999999999999998887556677888887888889999976 367899999999988754
No 321
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=50.56 E-value=13 Score=29.06 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=27.5
Q ss_pred ceecccccccC--CCceec--CCCccccHHHHHHHHhcCC
Q 001796 261 AFKCRITGTVM--MDPVSL--YTGTTCERAAIEAWLDRRE 296 (1012)
Q Consensus 261 ~~~cpi~~~~m--~dPv~~--~~g~t~~r~~i~~~~~~~~ 296 (1012)
.-.||+|++.+ .|.+++ .||-.|=|.| |-..|.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C---~~~~g~ 41 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC---WEKAGG 41 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH---HhhCCc
Confidence 45799999999 899888 8999999999 655443
No 322
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.52 E-value=4.1e+02 Score=32.55 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=44.5
Q ss_pred cCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhc
Q 001796 544 EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSS 617 (1012)
Q Consensus 544 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~ 617 (1012)
.|.+..+++...+.+..++..++..|..++........-+-.+....+..-+.+..+. ++..|+-+|..+-.
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~--VRiqAv~aLsrlQ~ 155 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPN--VRIQAVLALSRLQG 155 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCch--HHHHHHHHHHHHhc
Confidence 3455566666677788899999999999987433333334445555555555444333 34566666666653
No 323
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=50.03 E-value=5.7e+02 Score=32.75 Aligned_cols=125 Identities=14% Similarity=0.259 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHH-HHcccchhhhHHHHHHHHHHhhHHHHHHH----HhhccCC--------CcHH----H--HHHHHH
Q 001796 10 TILAVLTNQVIKTA-QAAKNVVYEKESFKVLSKHLFDIESVLKE----LQLQKLN--------DSQA----V--RLALES 70 (1012)
Q Consensus 10 ~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~l~r~~~~l~~llee----l~~~~~~--------~~~~----~--~~~l~~ 70 (1012)
..+..++++...+. ...+..+..++||- -+.+.|+||+ +++++.+ +|+. + ...=.-
T Consensus 938 p~~~~ifdl~~~~s~~~~s~is~~yKnFL-----ne~ViPvLEeCl~aL~~nn~~~L~kaLA~FP~d~qWSaFNs~EA~~ 1012 (1439)
T PF12252_consen 938 PDLEGIFDLQHRFSGVEDSKISQEYKNFL-----NEKVIPVLEECLNALRENNMDMLQKALAAFPSDKQWSAFNSEEARQ 1012 (1439)
T ss_pred chHHhHHHHHHHhhhhhhccccHHHHHHH-----HhccHHHHHHHHHHHHhcCHHHHHHHHHhCCCcccchhcCcHHHHH
Confidence 34445555444444 23345556666665 2567888887 3333311 1110 0 001112
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHhhHHHHHHHHHHHHHHHHHhhhccccch--hcchHHHHHHHHHHHHHHHhh
Q 001796 71 LEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIGRSLASLSLANT--EVLSEISDQMNRLQNEMQRVE 144 (1012)
Q Consensus 71 l~~~l~~a~~l~~~c~~~skl~l~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~--~~~~~v~e~v~~~~~~~~~~~ 144 (1012)
-...|+..|.+++.= =-|--+.+|+.-+.+ |.+...+ ++|..||-..- .||.+.+|||..+.+++...+
T Consensus 1013 AK~QMDaIKqmIekK---v~L~~L~qCqdALeK-qnIa~AL-~ALn~IPSdKEms~Is~eLReQIq~~KQ~LesLQ 1083 (1439)
T PF12252_consen 1013 AKAQMDAIKQMIEKK---VVLQALTQCQDALEK-QNIAGAL-QALNNIPSDKEMSKISSELREQIQSVKQDLESLQ 1083 (1439)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh-hhHHHHH-HHHhcCCchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 345566677776641 111246777766555 5555555 45788884321 199999999999999865443
No 324
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=49.22 E-value=83 Score=41.36 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=85.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHH
Q 001796 681 GVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTM 760 (1012)
Q Consensus 681 ~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~ 760 (1012)
.+..++..+..+...+|..|+++|..+..-++.-... ...-....+-+.. +...++++|+..++......++...
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~----~dvq~~Vh~R~~D-ssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR----PDVQEAVHGRLND-SSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC----HHHHHHHHHhhcc-chhHHHHHHHHHHhhhhhccHHHHH
Confidence 3567778888888899999999999987664432221 1112222222222 2467889999888876665555332
Q ss_pred HHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHh---cCCHHHHHHHHHHHHhh
Q 001796 761 KLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQ---IGSITAKARAAALIGTL 836 (1012)
Q Consensus 761 ~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~---s~~~~vk~~Aa~aL~nL 836 (1012)
.. ...+.+-+.+.+..+|..++.++..+|.. .|+.-. .....+.+++ +....+++-+...+.++
T Consensus 892 qy-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e-~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 892 QY-----YDQIIERILDTGVSVRKRVIKILRDICEE-TPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HH-----HHHHHhhcCCCchhHHHHHHHHHHHHHHh-CCChhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 22 34455556666778999999999999976 344322 2334444444 22223677777777666
No 325
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=49.00 E-value=11 Score=34.06 Aligned_cols=44 Identities=32% Similarity=0.594 Sum_probs=27.4
Q ss_pred Cceec---CCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccCHHHHHHHHHHHH
Q 001796 273 DPVSL---YTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSNSPLRQSIEEWKE 326 (1012)
Q Consensus 273 dPv~~---~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~ 326 (1012)
.||-+ +|| |.||.|+++|-.- |. +.+|+..+. .-+-+.|..|.+
T Consensus 64 HPVFiAQHATa-tCCRgCL~KWH~I-----p~-gr~Lt~~eq---~yiv~vi~~Wi~ 110 (111)
T PF13811_consen 64 HPVFIAQHATA-TCCRGCLEKWHGI-----PK-GRELTEEEQ---AYIVDVIMRWIE 110 (111)
T ss_pred CCeeeecCCCc-cchHHHHHHHhCC-----CC-CCCCCHHHH---HHHHHHHHHHHh
Confidence 68888 566 9999999999753 22 233332211 124567777765
No 326
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.04 E-value=56 Score=31.64 Aligned_cols=72 Identities=17% Similarity=0.132 Sum_probs=60.1
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHhhcc
Q 001796 767 GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI-GSITAKARAAALIGTLST 838 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~vk~~Aa~aL~nLs~ 838 (1012)
++..|.+-|+++++.++-.|+..|-.+..+-.......+.+.+++..|+.++.. .++.|+..+...+...+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 466777888899999999999988888776456777888899999999999974 567899999999988753
No 327
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.76 E-value=10 Score=41.64 Aligned_cols=47 Identities=11% Similarity=-0.032 Sum_probs=35.3
Q ss_pred CCCCCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCccc
Q 001796 256 IQPLNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGVVL 306 (1012)
Q Consensus 256 ~~~~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l 306 (1012)
.+-|..-.|-||.+=.++-|.++|||+.| |+.-.. ....||.|++..
T Consensus 300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI 346 (355)
T KOG1571|consen 300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI 346 (355)
T ss_pred cccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence 34456678999999999999999999988 543322 245699998764
No 328
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=47.75 E-value=26 Score=36.03 Aligned_cols=97 Identities=12% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHhcCC-----ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHH
Q 001796 739 DVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINILKSG-----TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPL 813 (1012)
Q Consensus 739 ~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~ 813 (1012)
+....|..+|--+++ .++.+..++++.+--.|-.+|... -...+--+.+++..+..+++++..+.+..-+++|.
T Consensus 115 nRvcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 344556666666665 677677777776433344444332 23477889999999999988998888888999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhh
Q 001796 814 LVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 814 Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
+...+..|++--|..|+..+..+
T Consensus 194 cLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999888777777777666
No 329
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=46.79 E-value=13 Score=41.52 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=27.5
Q ss_pred ceecCCCccccH-----HHHHHHHhc------------CCCCCCCCCcccCCCC
Q 001796 274 PVSLYTGTTCER-----AAIEAWLDR------------REKTDPETGVVLEDTS 310 (1012)
Q Consensus 274 Pv~~~~g~t~~r-----~~i~~~~~~------------~~~~cp~~~~~l~~~~ 310 (1012)
|..-+|++-||| +|+-+||.+ |..+||.||.++.-.+
T Consensus 301 ~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 301 PNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred ccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 344578888876 699999974 3458999999876433
No 330
>PLN02189 cellulose synthase
Probab=46.76 E-value=13 Score=46.86 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=37.9
Q ss_pred Cceeccccccc-----CCCceec--CCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 260 NAFKCRITGTV-----MMDPVSL--YTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 260 ~~~~cpi~~~~-----m~dPv~~--~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
..-.|+||++= +-+|-+. .||.-.||.|.+-=-++|+..||.|+.+..
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34489999873 5566654 577889999997777789999999998875
No 331
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.35 E-value=1.4e+02 Score=37.53 Aligned_cols=112 Identities=17% Similarity=0.094 Sum_probs=69.7
Q ss_pred ccHHHHHHHhc------C--CChhHHHHHHHHHHhccCC---CCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 001796 766 DGLNAIINILK------S--GTMEAKENALSALFRFTDP---TNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIG 834 (1012)
Q Consensus 766 g~i~~Lv~lL~------~--~~~~~~~~a~~aL~~Ls~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~ 834 (1012)
|.++-+++.+. . .+++.++.|..++.+++.- .++ . +-..+.=.++++.-.+++..--.|.+||+.+.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-Y-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-h-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 45666666665 1 2456788898888888632 112 1 12233334566666667777789999999999
Q ss_pred hhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhcc-CCChHHHHHHHHHHHHHhhc
Q 001796 835 TLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQ-GRVHATAYEAIQTLSTLVQE 912 (1012)
Q Consensus 835 nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~-~~~~~v~~~Al~aL~~L~~~ 912 (1012)
.++.-. .+. ...-..++..-..+|. +.+-.|+.+|+-||..+..+
T Consensus 488 ~~~~~d------------------------f~d---------~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~ 533 (1010)
T KOG1991|consen 488 QFSSID------------------------FKD---------PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN 533 (1010)
T ss_pred HHHhcc------------------------CCC---------hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc
Confidence 984200 000 0111345555566666 56667888999999999875
No 332
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.16 E-value=63 Score=31.14 Aligned_cols=72 Identities=14% Similarity=0.090 Sum_probs=59.6
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc------CCHHHHHHHHHHHHhhcc
Q 001796 767 GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI------GSITAKARAAALIGTLST 838 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s------~~~~vk~~Aa~aL~nLs~ 838 (1012)
++..|.+-++++++.++-.|+.+|-.+..+-....+..+...+++.-|+.++.. .++.|+..+...+...+.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 466777888899999999999988888776557778888899999999999963 467899999999988754
No 333
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=44.29 E-value=5.7e+02 Score=29.79 Aligned_cols=144 Identities=13% Similarity=0.074 Sum_probs=86.6
Q ss_pred cHHHHHHHhcC-CChhHHHHHHHHHHhccCCCCHHHHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHH-HHHhhccCCcC
Q 001796 767 GLNAIINILKS-GTMEAKENALSALFRFTDPTNLEAQRNVVE--RGVYPLLVNLLQIGSITAKARAAA-LIGTLSTSSPK 842 (1012)
Q Consensus 767 ~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~--~g~i~~Lv~lL~s~~~~vk~~Aa~-aL~nLs~~~~~ 842 (1012)
.+..+++.|.+ .+...++-|.++|..++.+. +. .+.+ .-+|..+++.-.+..+.+-..|+. ++..++...+.
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-~~---~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~ 405 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-PA---RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL 405 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-hH---hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch
Confidence 35567777776 57788999999999998862 22 1111 123444555555556666555555 45555443320
Q ss_pred CccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHh
Q 001796 843 FTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVL 922 (1012)
Q Consensus 843 l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i 922 (1012)
. .|.-+..++...++.....++..+..+..+- ..+....+
T Consensus 406 ---------------------------------~------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l-~~EeL~~l 445 (516)
T KOG2956|consen 406 ---------------------------------Q------CIVNISPLILTADEPRAVAVIKMLTKLFERL-SAEELLNL 445 (516)
T ss_pred ---------------------------------h------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhc-CHHHHHHh
Confidence 1 1223344444466677677777788887631 11222222
Q ss_pred hhcCCchHHHHHhccCChhhHhHHHHHHHHHhc
Q 001796 923 HQEEAIKPTLEILTWGTDSLKEEALGFLEKVFM 955 (1012)
Q Consensus 923 ~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~ 955 (1012)
.. +-.|.+++-..+.+..+|..|+..|..+..
T Consensus 446 l~-diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 446 LP-DIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hh-hhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 22 467888888888889999988888777764
No 334
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=43.67 E-value=46 Score=32.23 Aligned_cols=46 Identities=20% Similarity=0.047 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCC
Q 001796 520 SRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGC 575 (1012)
Q Consensus 520 ~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 575 (1012)
.+..|+..|+.+--.. -|.+|+++|.++|.++...|+.+|.+.-..
T Consensus 79 s~~~Av~LLGtM~GGY----------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 79 SPAEAVELLGTMLGGY----------NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp -HHHHHHHHTTS-SST----------THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred CHHHHHHHHhhccCCC----------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 4556677776653322 378999999888899999999999886643
No 335
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=43.63 E-value=1.6e+02 Score=37.06 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=71.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHh----cCChHHHHHHHHHHHhcccccchhhHhh
Q 001796 467 LVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRII----QGAESSRILMMKALLSMELVDSNLELLG 542 (1012)
Q Consensus 467 Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~aL~~Ls~~~~~~~~i~ 542 (1012)
+-.-+.+.++.-+..|++.+....+.. + .....+....+..+++ +.+..+...++.+|..++..-..-..=.
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~---~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEA---K-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhcc---c-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 334445678888888888777665322 2 2233333333333332 3355666777778877776222112223
Q ss_pred hcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCC
Q 001796 543 KEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVP 601 (1012)
Q Consensus 543 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 601 (1012)
..++.|.+++-+......+++.+..++...+... .-....+.+...+.++++.
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~ 386 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQ 386 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChh
Confidence 4577888888888777778887777776665411 0112345556666666543
No 336
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=43.31 E-value=55 Score=29.62 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=29.1
Q ss_pred ccCCCCCceecccccccCCCceec--CCCccccHHHHH
Q 001796 254 NYIQPLNAFKCRITGTVMMDPVSL--YTGTTCERAAIE 289 (1012)
Q Consensus 254 ~~~~~~~~~~cpi~~~~m~dPv~~--~~g~t~~r~~i~ 289 (1012)
..+.+.++-.|++|...+.+++.+ ++||.|-..|+.
T Consensus 71 ~~v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 71 RSVVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ceEEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 345566788899999999987766 999999888864
No 337
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=43.14 E-value=96 Score=30.08 Aligned_cols=75 Identities=13% Similarity=0.130 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHhccC
Q 001796 634 EPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD-TDSEVREIAINLLFLFSHH 710 (1012)
Q Consensus 634 ~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-~~~~v~~~a~~~L~~ls~~ 710 (1012)
..++..|..-+.+.+ +.++..|+..|-.+..+.+......+.+...+..|+.++.. .++.++..++.++...+..
T Consensus 36 k~a~ral~KRl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNHKD--PNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 456777777777654 66889999999999887776677888888889999999988 6888999999999887644
No 338
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.03 E-value=1.5e+02 Score=37.35 Aligned_cols=120 Identities=17% Similarity=0.082 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHh------ccCCChhhHHHHHHHHHHhccC--chHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 001796 634 EPIVTNLLTLQQ------NFNSSYNVRKPALRALFRICKS--EAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLF 705 (1012)
Q Consensus 634 ~~~v~~Ll~ll~------~~~~~~~~~~~al~aL~~L~~~--~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~ 705 (1012)
.+++.-++..+. ..+..++-++-|++++.+|+.. ... .-+...+.-.++.+...++++-.-+|..|++.+.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s-~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKS-PYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCC-chHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 345555666665 3334456778899999888741 111 1122233334567777888888889999999999
Q ss_pred HhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHH
Q 001796 706 LFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELS 757 (1012)
Q Consensus 706 ~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~ 757 (1012)
.++.-.-.... .-..+++.-.+.|.++....++..|+-||..+-.+.+.
T Consensus 488 ~~~~~df~d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 488 QFSSIDFKDPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHhccCCChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 98833111110 11234555566676555777888899888888776554
No 339
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=42.83 E-value=94 Score=30.91 Aligned_cols=108 Identities=23% Similarity=0.214 Sum_probs=63.6
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccC---CCCHHHH
Q 001796 683 SLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLP---KSELSLT 759 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~---~~~~~~~ 759 (1012)
..+..++.+.+++-+-.++.+++.+...++.+.... .....+..|+.+|+..++..+.+.++.+|..+- .+-++..
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~-~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLS-HGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 557788888888888888888888776643222111 113567888889988877777877777666553 3444444
Q ss_pred HHHHhh---ccHHHHHHHhcCCChhHHHHHHHHHHhc
Q 001796 760 MKLIEL---DGLNAIINILKSGTMEAKENALSALFRF 793 (1012)
Q Consensus 760 ~~l~~~---g~i~~Lv~lL~~~~~~~~~~a~~aL~~L 793 (1012)
+.+... +.++.++.+++. ....+.++.+|..+
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 444422 234444444442 23344444444433
No 340
>PLN02195 cellulose synthase A
Probab=42.33 E-value=19 Score=45.29 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=36.7
Q ss_pred ecccccc-----cCCCceec--CCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 263 KCRITGT-----VMMDPVSL--YTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 263 ~cpi~~~-----~m~dPv~~--~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
.|.||++ .+-+|-+. .||.-.||.|.+-=-++|+..||+|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 5888877 56677765 778889999997666789999999998876
No 341
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.27 E-value=18 Score=39.86 Aligned_cols=51 Identities=25% Similarity=0.173 Sum_probs=40.5
Q ss_pred ceecCCCccccHHHHHHHHhcCCCCCCCCCccc--C---CCCCccCHHHHHHHHHH
Q 001796 274 PVSLYTGTTCERAAIEAWLDRREKTDPETGVVL--E---DTSLRSNSPLRQSIEEW 324 (1012)
Q Consensus 274 Pv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~~l--~---~~~l~~n~~l~~~i~~~ 324 (1012)
|=++.||||+|-.|+.+-+..+.-.||.|+.+. . ...+..|+++-+.|+..
T Consensus 22 p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 22 PRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 455569999999999987777677899999984 2 34578888888888876
No 342
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=42.23 E-value=18 Score=32.13 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCcc
Q 001796 278 YTGTTCERAAIEAWLDRREKTDPETGVV 305 (1012)
Q Consensus 278 ~~g~t~~r~~i~~~~~~~~~~cp~~~~~ 305 (1012)
.|+|.|---||.+|++. +..||.+.++
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 78999999999999987 6789998764
No 343
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=42.10 E-value=51 Score=31.90 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhc
Q 001796 683 SLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLAN 750 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~n 750 (1012)
..|..-+.++++.++..|+.+|..+....+......+...+++..|++++....+..++..++..+.+
T Consensus 44 ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~ 111 (142)
T cd03569 44 RALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQA 111 (142)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 44555567788899999999999988887777777777889999999998766566777766665543
No 344
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=41.99 E-value=16 Score=36.98 Aligned_cols=46 Identities=15% Similarity=0.356 Sum_probs=36.7
Q ss_pred eecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCC
Q 001796 262 FKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLED 308 (1012)
Q Consensus 262 ~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~ 308 (1012)
-.|.+|..|.-.-+-- +||..|-|.||+.++.+ ...||.|+--.+|
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccCc
Confidence 4689998887666554 67788999999999988 7899999764444
No 345
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.81 E-value=5.8e+02 Score=32.06 Aligned_cols=182 Identities=19% Similarity=0.149 Sum_probs=101.0
Q ss_pred cCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceecccCCccchh
Q 001796 555 GSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEKGNRLELE 634 (1012)
Q Consensus 555 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~g~~l~~~ 634 (1012)
.++-..++-.++..|..+....+....+...+.+....+.|++.++-+- -.|...+..||. ...+
T Consensus 737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsyvy--LnaI~gv~~Lce-------------vy~e 801 (982)
T KOG4653|consen 737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVY--LNAIRGVVSLCE-------------VYPE 801 (982)
T ss_pred cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceee--HHHHHHHHHHHH-------------hcch
Confidence 3344567888999999998877667777788889999999988755432 455555556664 0123
Q ss_pred HHHHHHHHH-HhccCCC-hhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCC
Q 001796 635 PIVTNLLTL-QQNFNSS-YNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEP 712 (1012)
Q Consensus 635 ~~v~~Ll~l-l~~~~~~-~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~ 712 (1012)
++++.|... .+..+.. ++.+-..=.++.++...-++.+... . +-.+..++...++++...|..++..++++..-..
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y-~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY-K-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH-H-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 455555552 2221111 1222223344555443222211111 1 1224455666677777789888888887653211
Q ss_pred cchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCC
Q 001796 713 EGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSE 755 (1012)
Q Consensus 713 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~ 755 (1012)
-.....+ ......++.+.+.++..-++.+|+-.+..+-.+.
T Consensus 880 ~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t 920 (982)
T KOG4653|consen 880 FQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT 920 (982)
T ss_pred hhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc
Confidence 1111111 2234445556666666677777777776665543
No 346
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=41.47 E-value=74 Score=30.33 Aligned_cols=69 Identities=19% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcC--CCchHHHHHHHHHHhcc
Q 001796 683 SLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLEN--DAKHDVQMAAAGLLANL 751 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~~~~~Aa~aL~nL 751 (1012)
..|-.-+.++++.++..|+.+|-.+....+......+....++..|++++.. ..+..++..+...+.+.
T Consensus 40 raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 40 RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 4455667788999999999999999988777676666766888889999866 45667777666665543
No 347
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=40.75 E-value=64 Score=28.60 Aligned_cols=70 Identities=10% Similarity=0.008 Sum_probs=51.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCc
Q 001796 507 KPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSK 577 (1012)
Q Consensus 507 ~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 577 (1012)
...+..|.++.+.+|-+++..|.+|....+ ...+-..+++..+...|+++++-+--+|...|..|+....
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 344556667778899999999999877555 2222235677777888888888888999999999986433
No 348
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=40.54 E-value=6.8e+02 Score=29.54 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhc
Q 001796 695 EVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLE 733 (1012)
Q Consensus 695 ~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~ 733 (1012)
.....+..+++||.... ....++..|..+|.
T Consensus 230 ~l~~~~w~~m~nL~~S~--------~g~~~i~~L~~iL~ 260 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSH--------LGHSAIRTLCDILR 260 (464)
T ss_pred ccchhHHHHHHHHHcCc--------cHHHHHHHHHHHHc
Confidence 56777888888887542 12345677888884
No 349
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.68 E-value=59 Score=38.96 Aligned_cols=141 Identities=11% Similarity=0.068 Sum_probs=97.2
Q ss_pred HHHHHhhcC----CCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHH
Q 001796 683 SLILSLLDD----TDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSL 758 (1012)
Q Consensus 683 ~~Lv~ll~~----~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~ 758 (1012)
|.+.+.+.+ .++.++.+|.-.|..+..-..+-. ..-+|.|+..+...+++.++.+|+-.|+.+...-...
T Consensus 895 pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc------~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 895 PVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFC------SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred HHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 445555555 578888888766655432211111 3458999999976668888888888888776532221
Q ss_pred HHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 001796 759 TMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 759 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
.+.. -..|.+-|.+.+..+++.+..++..|...+ .+.-.|-.+.+..+|.+.+.++...|-..+..++.
T Consensus 969 ~de~-----t~yLyrrL~De~~~V~rtclmti~fLilag------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 969 ADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAG------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred hHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHcc------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 1111 334556677778889999999999886642 23345788999999999999999999999999865
Q ss_pred CC
Q 001796 839 SS 840 (1012)
Q Consensus 839 ~~ 840 (1012)
..
T Consensus 1038 Kd 1039 (1128)
T COG5098 1038 KD 1039 (1128)
T ss_pred cc
Confidence 43
No 350
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=38.95 E-value=3.9e+02 Score=27.12 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=49.0
Q ss_pred CcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhh-cCChHHHHhhhcCCChhHHHHHHHHHHHhcCCC
Q 001796 505 WYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGK-EGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCS 576 (1012)
Q Consensus 505 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 576 (1012)
.++.++++..+.+..++..|+..+.-+.. .-++. .-.+|.|+.|..++++.++..|...+..+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~-----qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILR-----QGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHh-----cCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 35566666677788888888887765422 11111 236899999999999999999999999997543
No 351
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.38 E-value=20 Score=39.45 Aligned_cols=46 Identities=17% Similarity=0.105 Sum_probs=36.2
Q ss_pred ceecccccccCCCceecCCCcc-ccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 261 AFKCRITGTVMMDPVSLYTGTT-CERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t-~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
.-.|=||+.=-+|=|+++|-|. .|..|-+. +.-.++.||.||++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~-Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKS-LRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHH-HHHhhcCCCccccchH
Confidence 5789999999999999999995 46666544 3323678999999864
No 352
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=38.19 E-value=3e+02 Score=31.26 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=79.9
Q ss_pred HHHHHhhcCCC-HHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhh--cC-------CCchHHHHHHHHHHhccC
Q 001796 683 SLILSLLDDTD-SEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFL--EN-------DAKHDVQMAAAGLLANLP 752 (1012)
Q Consensus 683 ~~Lv~ll~~~~-~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL--~~-------~~~~~~~~~Aa~aL~nL~ 752 (1012)
..++..+.++. ...+..++..++.|+.+.. .. .-+....-+..|..+- +. ..+.++...|..+|+|+.
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~-~L-~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKD-GL-EPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcccc-cc-ccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 34555666554 3456667777777776521 11 0011111122222221 11 124577888999999999
Q ss_pred CCCHHHHHHHHhhccHHHHHHHhcCC-----ChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhc
Q 001796 753 KSELSLTMKLIELDGLNAIINILKSG-----TMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQI 820 (1012)
Q Consensus 753 ~~~~~~~~~l~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s 820 (1012)
.+++..++...+......+.+.+... ...++-.=.+.|.-++.-........+.+.++++.+.+++.+
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 99998888888888777777765432 122344445555555544212233556678999999999985
No 353
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=37.49 E-value=70 Score=39.89 Aligned_cols=105 Identities=12% Similarity=0.111 Sum_probs=68.9
Q ss_pred cchHHHHhccC-CChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhchHhhHh
Q 001796 883 ALPHLVKLLQG-RVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVD 961 (1012)
Q Consensus 883 ai~~Lv~lL~~-~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~~~~ 961 (1012)
.+|.|++-|+- ....+....+.|++-++.. . .++.+ ..+|.|...|+++++-+|+.+...|.++...+=++.
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~-----Y-Tam~d-~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw 1041 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSS-----Y-TAMTD-RYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKW 1041 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHH-----H-HHHHH-HhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhc
Confidence 56677766653 3334444455555555542 1 11222 478899999999999999999999999986443222
Q ss_pred hhcccccchhhhhhhhcccCCchHHHHHHHHHHHHHhc
Q 001796 962 TYGSSARLLLVPLTSRNVHEDGSLERKAAKVLSLIERY 999 (1012)
Q Consensus 962 ~~~~~~~~~l~~L~~~~~~~~~~~~~~Aa~~L~~L~~~ 999 (1012)
. +..++..+..+.+.++++|..|.-.+.++-+-
T Consensus 1042 ~-----G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1042 N-----GELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred c-----hhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 2 22344444455578999999999999877654
No 354
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=37.48 E-value=15 Score=39.91 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=19.9
Q ss_pred ceecccccccCC---CceecCCCccccHHH
Q 001796 261 AFKCRITGTVMM---DPVSLYTGTTCERAA 287 (1012)
Q Consensus 261 ~~~cpi~~~~m~---dPv~~~~g~t~~r~~ 287 (1012)
.|.||+|...|. ..+.-+.||+||..-
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a~ 31 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCAK 31 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcccc
Confidence 489999999995 334446688888654
No 355
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=36.96 E-value=3.2e+02 Score=30.63 Aligned_cols=199 Identities=19% Similarity=0.107 Sum_probs=100.8
Q ss_pred hcCCcHHHHHHHhc-CChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHH
Q 001796 502 KSGWYKPLIDRIIQ-GAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRE 580 (1012)
Q Consensus 502 ~~g~i~~Lv~lL~~-~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 580 (1012)
...++..|+.++.. +++.....++.++..-...- ..-+...++..+.+-+.+..+.+|..-+..+..+.....+..
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~ 96 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSD 96 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCch
Confidence 34455566666654 56666767777766433211 111234456666777777666688888877777765222222
Q ss_pred HH-HHcCChHHHHHHhhcCCCCh----h--HHHHHHHHHHHhhc---cCcc-------c-eecccCCccchhHHHHHHHH
Q 001796 581 LI-SAAGGIPQVLELMFSSHVPS----N--IIVKCSEILEKLSS---DGIK-------F-LVDEKGNRLELEPIVTNLLT 642 (1012)
Q Consensus 581 ~i-~~~g~i~~Lv~lL~~~~~~~----~--~~~~a~~~L~nLa~---~~~~-------~-~~~~~g~~l~~~~~v~~Ll~ 642 (1012)
.. .-...+|.|++.++...... + ....|..++. +.. +... . ..+.....+.+..+...+
T Consensus 97 ~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl-- 173 (339)
T PF12074_consen 97 SLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL-- 173 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--
Confidence 12 22346788888886431111 1 1122222222 211 0000 0 111111112223333222
Q ss_pred HHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHhccCCCc
Q 001796 643 LQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDT--DSEVREIAINLLFLFSHHEPE 713 (1012)
Q Consensus 643 ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~--~~~v~~~a~~~L~~ls~~~~~ 713 (1012)
.+++-....+++|..+..+......... ....-..++.++-++ ...+|..|..++..+....++
T Consensus 174 ------~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 174 ------ASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred ------CCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH
Confidence 1234556777777777654322111111 112235677887777 788999999999987665444
No 356
>PF14353 CpXC: CpXC protein
Probab=36.65 E-value=20 Score=33.93 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=33.0
Q ss_pred ceecccccccCCCceecCCCccccHHHHHHHHhcC--CCCCCCCCccc
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRR--EKTDPETGVVL 306 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~--~~~cp~~~~~l 306 (1012)
+..||-|+..+.=.|-..-.-+-+..-.++-++.. ..+||.||...
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCce
Confidence 36799999988877766555556766677666432 34799999875
No 357
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=36.31 E-value=1.9e+02 Score=27.57 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=58.8
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCC--HHHHHHHHHHHHhhcc
Q 001796 767 GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGS--ITAKARAAALIGTLST 838 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~--~~vk~~Aa~aL~nLs~ 838 (1012)
++..|.+-|+++++.++-.|+.+|-.+..+-.......+...+++..|+.++.... +.|+..+...+...+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 46667778889999999999999998887755777788889999999999998653 3489999888887743
No 358
>PLN02436 cellulose synthase A
Probab=35.42 E-value=26 Score=44.52 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=37.7
Q ss_pred Cceecccccc-----cCCCceec--CCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 260 NAFKCRITGT-----VMMDPVSL--YTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 260 ~~~~cpi~~~-----~m~dPv~~--~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
..=.|.||++ ..-||-+. .||.-.||.|.+-=-++|+..||.|+.+..
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3458999986 34566655 577889999997777789999999998775
No 359
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=34.61 E-value=2.5e+02 Score=34.35 Aligned_cols=133 Identities=12% Similarity=0.041 Sum_probs=91.4
Q ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHH-hcCChHHHHHHHHHHHhcccccchhh
Q 001796 461 CSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRI-IQGAESSRILMMKALLSMELVDSNLE 539 (1012)
Q Consensus 461 ~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls~~~~~~~ 539 (1012)
..++|.|..-+++.+..+|+.++..+-..+..=+ ...+..-++|.+-.+. +..+..++.+++.++..+.. ...
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---~lD 461 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---RLD 461 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---HHH
Confidence 4567888888888888999999999888764332 4445556667766653 44577889999999988872 222
Q ss_pred HhhhcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCC
Q 001796 540 LLGKEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSH 599 (1012)
Q Consensus 540 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~ 599 (1012)
...-..-++++.+-.+..++.+....+.+..++.....+...+.....+|.++.+...+.
T Consensus 462 ~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 462 KAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 221123344555555667888888888888888865555445555667888888777664
No 360
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=34.36 E-value=79 Score=30.17 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=49.5
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchH-HHHHHHHHHh
Q 001796 683 SLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHD-VQMAAAGLLA 749 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~-~~~~Aa~aL~ 749 (1012)
..|-.-+.++++.++..|+.+|-.+....+......+...+++..|++++....+.. ++..++..+.
T Consensus 40 r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~ 107 (133)
T smart00288 40 RLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQ 107 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 345555677889999999999999888877777777777889999999887664433 5655555443
No 361
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.88 E-value=4.4e+02 Score=34.87 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC-------CCHHHHHHHHHHHHH
Q 001796 634 EPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD-------TDSEVREIAINLLFL 706 (1012)
Q Consensus 634 ~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~-------~~~~v~~~a~~~L~~ 706 (1012)
.+.+.....+.......-+++...+.+|.++-...+.. +. .| -+.+.+++++ ....+..-+-..|+.
T Consensus 839 ~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~----ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrl 912 (1610)
T KOG1848|consen 839 LGMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEH----LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRL 912 (1610)
T ss_pred hHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchh----hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhh
Confidence 55666666666666666678888889998886655431 11 12 3333444332 234566666677777
Q ss_pred hccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCC
Q 001796 707 FSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPK 753 (1012)
Q Consensus 707 ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~ 753 (1012)
++.+.-....... =.+.|..++...+...|.++--.|.+.+|+++.
T Consensus 913 IssDfLqSLp~sc-i~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 913 ISSDFLQSLPTSC-ILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred hhhcchhcCChHH-HHHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 7655222111110 024455555555555566677778888887754
No 362
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=33.47 E-value=28 Score=32.87 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=33.9
Q ss_pred ceecccccccCCC--ceec-CCCcc------ccHHHHHHHHhcCCCCCCCCCcc
Q 001796 261 AFKCRITGTVMMD--PVSL-YTGTT------CERAAIEAWLDRREKTDPETGVV 305 (1012)
Q Consensus 261 ~~~cpi~~~~m~d--Pv~~-~~g~t------~~r~~i~~~~~~~~~~cp~~~~~ 305 (1012)
..-|.||.+-..+ =|+. ++|.| ||.+|+++|-. .+...|.-|.-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccce
Confidence 6789999998888 5444 77754 78999999964 46789987653
No 363
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=32.92 E-value=90 Score=27.69 Aligned_cols=82 Identities=10% Similarity=0.112 Sum_probs=57.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhh
Q 001796 464 ILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGK 543 (1012)
Q Consensus 464 i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 543 (1012)
....+..++++...+|..+...|..|..... .......+++..+...|+++++-+-.+|..+|..|+.....
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~------ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD------ 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH------
Confidence 3445566788888999999999999976544 23333456677777888888888888999999888773332
Q ss_pred cCChHHHHhhh
Q 001796 544 EGIIPPLLGLV 554 (1012)
Q Consensus 544 ~g~i~~Lv~lL 554 (1012)
.++|.|++..
T Consensus 77 -~vl~~L~~~y 86 (92)
T PF10363_consen 77 -EVLPILLDEY 86 (92)
T ss_pred -HHHHHHHHHH
Confidence 2455555543
No 364
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=32.71 E-value=1.8e+02 Score=28.06 Aligned_cols=75 Identities=21% Similarity=0.140 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcC------CCHHHHHHHHHHHHHh
Q 001796 634 EPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDD------TDSEVREIAINLLFLF 707 (1012)
Q Consensus 634 ~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~------~~~~v~~~a~~~L~~l 707 (1012)
..++..+..-+.+.+ +.++..|+.+|-.+.++.+......+.+.+.+..++.++.. .++.++...+.++...
T Consensus 37 k~a~rai~krl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 37 QLAVRLLAHKIQSPQ--EKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 346667777777655 66888899888888887666577888888888889998853 4678999999988877
Q ss_pred ccC
Q 001796 708 SHH 710 (1012)
Q Consensus 708 s~~ 710 (1012)
+..
T Consensus 115 ~~~ 117 (139)
T cd03567 115 TLE 117 (139)
T ss_pred HHH
Confidence 643
No 365
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=32.61 E-value=37 Score=30.78 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=32.1
Q ss_pred ccCCCC-CceecccccccCCCceecC-CC-----ccccHHHHHHHHhcCCCCCCCCCcccCCC
Q 001796 254 NYIQPL-NAFKCRITGTVMMDPVSLY-TG-----TTCERAAIEAWLDRREKTDPETGVVLEDT 309 (1012)
Q Consensus 254 ~~~~~~-~~~~cpi~~~~m~dPv~~~-~g-----~t~~r~~i~~~~~~~~~~cp~~~~~l~~~ 309 (1012)
+.+..| +.+.|||++++=..=|.+. ++ .-||..++.+-...| ..=|.+|+|+...
T Consensus 32 ~~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~-~~HPLSREpit~s 93 (113)
T PF06416_consen 32 EEFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG-APHPLSREPITPS 93 (113)
T ss_dssp CCCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TT
T ss_pred hhccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC-CCCCCccCCCChh
Confidence 344555 5799999999999999882 22 369999999988763 3457888877643
No 366
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=32.33 E-value=31 Score=43.90 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=37.1
Q ss_pred ceeccccccc-----CCCceec--CCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 261 AFKCRITGTV-----MMDPVSL--YTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 261 ~~~cpi~~~~-----m~dPv~~--~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
.=.|.||++= +-||-+. .||.-.||.|.+-=-++|+..||+|+.+..
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4489999863 4556655 777889999997667789999999998765
No 367
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=32.17 E-value=6.3e+02 Score=26.65 Aligned_cols=129 Identities=22% Similarity=0.233 Sum_probs=78.5
Q ss_pred ChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHH
Q 001796 650 SYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALV 729 (1012)
Q Consensus 650 ~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv 729 (1012)
+++.+...+.+|..+|.+.. .+...+ +..+..+...++...+.-+..++..+-..++... +.+..++
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-------~~L~~~L 80 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-VCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-------PFLQPLL 80 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-cchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-------HHHHHHH
Confidence 45688899999999988772 122333 3556666666666665566666666654422111 3344444
Q ss_pred Hh--hc-------CCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHHh-cCCChhHHHHHHHHHHhccCC
Q 001796 730 GF--LE-------NDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINIL-KSGTMEAKENALSALFRFTDP 796 (1012)
Q Consensus 730 ~l--L~-------~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~~~~~a~~aL~~Ls~~ 796 (1012)
.. ++ .....+.....+..+..++...++.. ...++.+..++ ++.++.++..++.+|..++..
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 43 11 11123333444566777776666522 22477788888 677888999999999999854
No 368
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.09 E-value=1.4e+02 Score=32.73 Aligned_cols=135 Identities=23% Similarity=0.253 Sum_probs=79.0
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhh
Q 001796 686 LSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIEL 765 (1012)
Q Consensus 686 v~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~ 765 (1012)
+..|.+.+=.....++..++.|+..+++.....+ ...|..+++-+++. ...+-.+|+.++..+-..- ...+.+
T Consensus 94 l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNl-RS~VsraA~~t~~difs~l---n~~i~~- 166 (334)
T KOG2933|consen 94 LKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSL---NNSIDQ- 166 (334)
T ss_pred HHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHH---HHHHHH-
Confidence 3445555555566667777777766565544332 23455555555555 3456666777776654321 122222
Q ss_pred ccHHHHHH-HhcCCCh---hHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 766 DGLNAIIN-ILKSGTM---EAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 766 g~i~~Lv~-lL~~~~~---~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
.+..++. |+..++. =+++.|-.+|..+..+-.|. . +++.|+..++..++.++..++....+.
T Consensus 167 -~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--~------~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 167 -ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--K------LLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred -HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--H------HHHHHHHHHhhhchhhhhhhhcccccc
Confidence 2343443 4444332 37888888888887764443 1 467777778888888888777666553
No 369
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=31.46 E-value=31 Score=33.60 Aligned_cols=38 Identities=24% Similarity=0.254 Sum_probs=24.3
Q ss_pred CCceecccccccCCCceecCCCccccHHHHHHHHh-cCCCCCCCCCcccCC
Q 001796 259 LNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLD-RREKTDPETGVVLED 308 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~-~~~~~cp~~~~~l~~ 308 (1012)
...|.||- ||++|.-.-.....+ .|..+||.|+.++..
T Consensus 97 ~~~Y~Cp~------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPN------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcC------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 46899994 555666433333332 244789999998854
No 370
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=31.14 E-value=52 Score=30.93 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=39.5
Q ss_pred CceecccccccCCCceec----CCCccccHHHHHH-HHhc-CCCCCCCCCcccCC
Q 001796 260 NAFKCRITGTVMMDPVSL----YTGTTCERAAIEA-WLDR-REKTDPETGVVLED 308 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~----~~g~t~~r~~i~~-~~~~-~~~~cp~~~~~l~~ 308 (1012)
.=+.|-||.|.-.|+=-+ .||.+.|-.|--. |.-. -+..||.|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 568899999999998777 5799999998877 5443 46799999887754
No 371
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.61 E-value=1.1e+03 Score=28.78 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=43.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhccccchhcchHHHHHHHHHH---HHHHHhhhhhchHHHH
Q 001796 95 VKCRYIVNEIQEVTRNIGRSLASLSLANTEVLSEISDQMNRLQ---NEMQRVEFKASQSQIV 153 (1012)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~v~e~v~~~~---~~~~~~~~~~~~~~~~ 153 (1012)
++...++.+++.-+.++...++.||-=--.+..++-+|++.+. .+|.+.+|..+..++-
T Consensus 190 ~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~ 251 (560)
T PF06160_consen 190 LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIE 251 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHH
Confidence 4667888899999999999999999544456667777777777 6677777765443333
No 372
>PRK10869 recombination and repair protein; Provisional
Probab=30.37 E-value=1.1e+03 Score=28.72 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHhh---HHHHHHHHHHHHH
Q 001796 34 ESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKC---RYIVNEIQEVTRN 110 (1012)
Q Consensus 34 ~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~~~skl~l~~~~---~~~~~~~~~~~~~ 110 (1012)
.+..+..+++..+.-.++||...++ .|.-...|++-+..|..+..+.+.+... |-++.. ..+...+..+...
T Consensus 178 ~~~~~~~~~~d~l~fql~Ei~~~~l--~~gE~eeL~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~l~~~~~~ 252 (553)
T PRK10869 178 QQSQERAARKQLLQYQLKELNEFAP--QPGEFEQIDEEYKRLANSGQLLTTSQNA---LQLLADGEEVNILSQLYSAKQL 252 (553)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCCcccHHHHHHHHHHH
Confidence 3557788999999999999976553 3444566667777777777777766332 222333 1344444444444
Q ss_pred HHHHhhhcc-cc-chhcchHHHHHHHHHHHHHHHhhh--hhchHHHHHHHhhhhhhccccchhhhHHHHHHHHHhCCCCC
Q 001796 111 IGRSLASLS-LA-NTEVLSEISDQMNRLQNEMQRVEF--KASQSQIVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVE 186 (1012)
Q Consensus 111 ~~~~l~~~p-~~-~~~~~~~v~e~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 186 (1012)
+...-..=| +. -.+--.++..+++.+..+++.+.- ..||.+ .+.+.+ -...+..+.++.|. +
T Consensus 253 l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~-l~~ie~-----------Rl~~l~~L~rKyg~--~ 318 (553)
T PRK10869 253 LSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNR-LAELEQ-----------RLSKQISLARKHHV--S 318 (553)
T ss_pred HHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH-HHHHHH-----------HHHHHHHHHHHhCC--C
Confidence 444311101 00 000011122223333333332221 122221 111111 02456677777785 5
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 001796 187 PSEISKELASFRREKEEAAN 206 (1012)
Q Consensus 187 ~~~~~~E~~~l~~~~~~~~~ 206 (1012)
..++......+++++.....
T Consensus 319 ~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 319 PEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 77777777777777765443
No 373
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=30.28 E-value=46 Score=36.47 Aligned_cols=47 Identities=11% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCCceecccccccCCCceec-CCCccccHHHHHHHHhcCCCCCCCCCcccCC
Q 001796 258 PLNAFKCRITGTVMMDPVSL-YTGTTCERAAIEAWLDRREKTDPETGVVLED 308 (1012)
Q Consensus 258 ~~~~~~cpi~~~~m~dPv~~-~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~ 308 (1012)
..+=|-||+|.+.|.-|+.= .-||.-|-+|=. +-...||.|+.++.+
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~----~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT----KVSNKCPTCRLPIGN 92 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhh----hhcccCCcccccccc
Confidence 34568899999999999764 448988888743 235689999988774
No 374
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=30.16 E-value=5.4e+02 Score=25.37 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=70.6
Q ss_pred hHHHHhhhcCC-ChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceec
Q 001796 547 IPPLLGLVGSG-NFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVD 625 (1012)
Q Consensus 547 i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~ 625 (1012)
++.|.++|+.+ +..++.+++++|+.|-.-+..+.+....+.=... -...... ..-..+.+.... .
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~-----~~~~~l~~~~~~---~--- 77 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDE-----STDISLPMMGIS---P--- 77 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---ccccccc-----chhhHHhhccCC---C---
Confidence 45667777665 4789999999999998777666553322110000 0000000 000000000000 0
Q ss_pred ccCCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 001796 626 EKGNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKANGVSLILSLLDDTDSEVREIAINLLF 705 (1012)
Q Consensus 626 ~~g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~ 705 (1012)
.........++..|++.+++.+-+. -+..++.++.++.+..+.++...+ ...+|.++..++..++..++....-|.
T Consensus 78 -~~ee~y~~vvi~~L~~iL~D~sLs~-~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~ 153 (160)
T PF11865_consen 78 -SSEEYYPTVVINALMRILRDPSLSS-HHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLA 153 (160)
T ss_pred -chHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 0000112346677777777654322 345677777776544332222221 234677888887776677666555554
Q ss_pred Hh
Q 001796 706 LF 707 (1012)
Q Consensus 706 ~l 707 (1012)
.+
T Consensus 154 ~l 155 (160)
T PF11865_consen 154 DL 155 (160)
T ss_pred HH
Confidence 43
No 375
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=30.01 E-value=3.5e+02 Score=27.41 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=43.8
Q ss_pred ccCChhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChh
Q 001796 426 GRDPSISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEE 495 (1012)
Q Consensus 426 ~~~~~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~ 495 (1012)
+++...+..|+.++.-..+.. +.-=.-++|.|+.+..++++.++..|...+..+....+.
T Consensus 19 ~~~~~vr~~Al~~l~~il~qG----------LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 19 SSDDSVRLAALQVLELILRQG----------LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred CCCHHHHHHHHHHHHHHHhcC----------CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 445567777777776665421 111125799999999999999999999999999865543
No 376
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=29.68 E-value=1.3e+02 Score=26.81 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=46.8
Q ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHh-cccch
Q 001796 28 NVVYEKESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKY-KNKSR 90 (1012)
Q Consensus 28 ~~~~~k~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c-~~~sk 90 (1012)
+..+-|+|=..|+++|.-..|+++.+...+ .+++.-......-...-++|+.|+..- ..|++
T Consensus 7 ~~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~-Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~ 69 (94)
T cd08329 7 DLSLIRKNRMALFQHLTSVLPILDSLLSAN-VITEQEYDVIKQKTQTPLQARELIDTVLVKGNA 69 (94)
T ss_pred HHHHHHHhHHHHHHHHhhhHHHHHHHHHcC-CCCHHHHHHHHcCCChHHHHHHHHHHHHhhhHH
Confidence 344557788899999988999999998555 567766677766666679999999875 33543
No 377
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=29.67 E-value=7.4e+02 Score=26.71 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=116.6
Q ss_pred HHHhhhcCCChhHHHHHHHHHHHhcCC-CchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHHHHHhhccCccceeccc
Q 001796 549 PLLGLVGSGNFQSKELSLSVLVKLSGC-SKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEILEKLSSDGIKFLVDEK 627 (1012)
Q Consensus 549 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~L~nLa~~~~~~~~~~~ 627 (1012)
.|-..|.++++..|..|...|..+-.. +... ....-+..|++.+.+.-.+......++..+..|..... ....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~--~~~~- 76 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN--FSPE- 76 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC--CChh-
Confidence 344567788888999998888876542 2221 11222556666655543333333444555555553100 0000
Q ss_pred CCccchhHHHHHHHHHHhccCCChhhHHHHHHHHHHhccCchHHHHHHHHhc--CcHHHHHHhhcCC-CHHHHHHHHHHH
Q 001796 628 GNRLELEPIVTNLLTLQQNFNSSYNVRKPALRALFRICKSEAELVKIAVVKA--NGVSLILSLLDDT-DSEVREIAINLL 704 (1012)
Q Consensus 628 g~~l~~~~~v~~Ll~ll~~~~~~~~~~~~al~aL~~L~~~~~~~~~~~i~~~--g~v~~Lv~ll~~~-~~~v~~~a~~~L 704 (1012)
....++..+..-.+...-....|..+..+|..+..+.. ..+... +.+..+++.++++ +|.-..-+..++
T Consensus 77 ----~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~----~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~ 148 (262)
T PF14500_consen 77 ----SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR----EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLL 148 (262)
T ss_pred ----hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH----HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 01223344433222222223467777777777755432 222223 3467788888775 777666777777
Q ss_pred HHhccCCCcchHHhhhcCCChHHHHHhhc--------CC-Cch--HHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHH
Q 001796 705 FLFSHHEPEGVVEYLLKPKRLEALVGFLE--------ND-AKH--DVQMAAAGLLANLPKSELSLTMKLIELDGLNAIIN 773 (1012)
Q Consensus 705 ~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~--------~~-~~~--~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~ 773 (1012)
..+...-+ . ....+.+-+.+. .+ +++ -..+.-..+|.+.-...+.. ..-++|.|++
T Consensus 149 ~~i~~~~~-------~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~Lle 215 (262)
T PF14500_consen 149 KVILQEFD-------I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLE 215 (262)
T ss_pred HHHHHhcc-------c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHH
Confidence 66643322 0 233344444332 11 111 01222222233322223322 2346999999
Q ss_pred HhcCCChhHHHHHHHHHHhccCCC
Q 001796 774 ILKSGTMEAKENALSALFRFTDPT 797 (1012)
Q Consensus 774 lL~~~~~~~~~~a~~aL~~Ls~~~ 797 (1012)
-|.++++.+|..+..+|.......
T Consensus 216 KL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 216 KLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHC
Confidence 999999999999999998876543
No 378
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=29.51 E-value=34 Score=36.74 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=33.6
Q ss_pred ceecccccccC----CCceecCCCccccHHHHHHHHhcCCCCCCCCCc
Q 001796 261 AFKCRITGTVM----MDPVSLYTGTTCERAAIEAWLDRREKTDPETGV 304 (1012)
Q Consensus 261 ~~~cpi~~~~m----~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~ 304 (1012)
++-|||+.+-| .+|...+|||+--..|.++....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 56699998765 578888999987767766666666 99999955
No 379
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=29.44 E-value=5.5e+02 Score=25.99 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=68.2
Q ss_pred CCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhc-------------------cHHHHHHHhcCC-Chh
Q 001796 722 PKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELD-------------------GLNAIINILKSG-TME 781 (1012)
Q Consensus 722 ~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g-------------------~i~~Lv~lL~~~-~~~ 781 (1012)
...-+.|+..+-.+.+..++.+|+.+|..|-.+...+-...-+.. .-..|+..|+.+ +..
T Consensus 38 ~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~ 117 (182)
T PF13251_consen 38 RPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPP 117 (182)
T ss_pred CCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 456667777665555788999999999888765543221111111 112344445554 455
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHH----HHHhcCCHHHHHHHHHHHHhhcc
Q 001796 782 AKENALSALFRFTDPTNLEAQRNVVERGVYPLLV----NLLQIGSITAKARAAALIGTLST 838 (1012)
Q Consensus 782 ~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv----~lL~s~~~~vk~~Aa~aL~nLs~ 838 (1012)
+.-..+.+|..+... .|..+- ..|.++.++ .++.+.++.++..+..++..+..
T Consensus 118 ~l~q~lK~la~Lv~~-tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 118 VLTQLLKCLAVLVQA-TPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHcc-CChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 666667777776654 233221 345555544 55567788899999888888744
No 380
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=29.00 E-value=4.7e+02 Score=25.77 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=20.8
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 809 GVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 809 g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
.++|.+++.+++.++..++.--.-|+.|
T Consensus 128 ~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 128 QVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3789999999987777777666555554
No 381
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=28.83 E-value=1.3e+02 Score=35.58 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=68.2
Q ss_pred cCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhch---H
Q 001796 881 ANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMS---K 957 (1012)
Q Consensus 881 ~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~---~ 957 (1012)
+|.+..+++-+.+.+..|...++..|+.+... -.......-.|-+..|..-+.+..+.+|..|+.+|+++-.. +
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~---v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDV---VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 67778888888888899999999999888763 22222222225566777666678889999999999988654 3
Q ss_pred hhHhhhcccccchhhhhhhhcccCCchHHHHH
Q 001796 958 EMVDTYGSSARLLLVPLTSRNVHEDGSLERKA 989 (1012)
Q Consensus 958 ~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~A 989 (1012)
+.... . .|..++|. +.++++|+.|
T Consensus 167 en~~~-----n-~l~~~vqn--DPS~EVRr~a 190 (885)
T COG5218 167 ENRIV-----N-LLKDIVQN--DPSDEVRRLA 190 (885)
T ss_pred HHHHH-----H-HHHHHHhc--CcHHHHHHHH
Confidence 32221 1 56788885 5566787765
No 382
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.62 E-value=1.2e+02 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.021 Sum_probs=33.2
Q ss_pred ChHHHHhhhcCCChhHHHHHHHHHHHhcCCCchHHHHHH
Q 001796 546 IIPPLLGLVGSGNFQSKELSLSVLVKLSGCSKNRELISA 584 (1012)
Q Consensus 546 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 584 (1012)
+|+.|++-|.+.++++...|..+|...|..+.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578899999999999999999999999988766665554
No 383
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=28.36 E-value=4.5e+02 Score=32.14 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=81.0
Q ss_pred HHHHhcCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCC
Q 001796 674 IAVVKANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPK 753 (1012)
Q Consensus 674 ~~i~~~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~ 753 (1012)
+.+++...+|.+..-+.+.++.+|+..++.+..++.--+... .....+..+-+ ++.+.....+.+..-+|+.++.
T Consensus 363 ~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~----Ln~Ellr~~ar-~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 363 KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRN----LNGELLRYLAR-LQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhh----hcHHHHHHHHh-hCccccCcccccceeeeccccc
Confidence 344555566777777777788888888777766654322110 11111111211 1222233455555555555554
Q ss_pred CCHHHHHHHHhhcc-HHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Q 001796 754 SELSLTMKLIELDG-LNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAAL 832 (1012)
Q Consensus 754 ~~~~~~~~l~~~g~-i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~a 832 (1012)
... ...+.++ +.++.+-+++.-+..|..+..+++...... .... +...++|.++-+.-+.+..++..|-.+
T Consensus 438 ~l~----~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~--~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~ 509 (690)
T KOG1243|consen 438 HLA----ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYF--DQSE--VANKILPSLVPLTVDPEKTVRDTAEKA 509 (690)
T ss_pred ccc----hhhhccccchhhhhhhcCCCCCchhhhhHHHhhccccc--chhh--hhhhccccccccccCcccchhhHHHHH
Confidence 321 1223332 334555566666677888888877765542 2111 123467888877777777777777666
Q ss_pred HHhh
Q 001796 833 IGTL 836 (1012)
Q Consensus 833 L~nL 836 (1012)
+..+
T Consensus 510 i~~f 513 (690)
T KOG1243|consen 510 IRQF 513 (690)
T ss_pred HHHH
Confidence 6554
No 384
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=28.16 E-value=1.9e+02 Score=35.23 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=41.5
Q ss_pred ccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhccc
Q 001796 460 QCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMEL 533 (1012)
Q Consensus 460 ~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~ 533 (1012)
..+.+|.|+.++++.|..+|..-..-+-+.. +.--..+.+.-++|.+..-+.+.++..|..++..+..|+.
T Consensus 328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i---~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI---DHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred ccchhhhHHHHhcCcchHHHHHHHHhHHHHh---hhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 3467888888888877776654433222221 1222344555666666666666666666666666554433
No 385
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=28.00 E-value=1.2e+03 Score=28.66 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=88.1
Q ss_pred CChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHh-cCCHHHHHHHHHHHHhhccCCcCCccCCCCCcccccC
Q 001796 778 GTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQ-IGSITAKARAAALIGTLSTSSPKFTDMPESAGCWCFR 856 (1012)
Q Consensus 778 ~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~-s~~~~vk~~Aa~aL~nLs~~~~~l~~~~~~~~~~c~~ 856 (1012)
.++..+..|.-.|..+.-- +.+.+. .-+|.|+..+. +++|.+|..|..+|+.+.-
T Consensus 908 sd~~lq~aA~l~L~klMCl-S~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~v------------------ 963 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCL-SFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLV------------------ 963 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHH-hHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccce------------------
Confidence 3566777777777765332 123222 35899999888 7789999999999998832
Q ss_pred CCCCccccccCCccCCCcchhhhhcCcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhc
Q 001796 857 PSRAHLCQVHGGICSESTSFCLLKANALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILT 936 (1012)
Q Consensus 857 ~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~ 936 (1012)
|-.+- + ...-..|.+-|.+++..|+..|+.++..|... |. +.=-|-.+.+..++.
T Consensus 964 ------cfN~~-----------~-de~t~yLyrrL~De~~~V~rtclmti~fLila-----gq--~KVKGqlg~ma~~L~ 1018 (1128)
T COG5098 964 ------CFNTT-----------A-DEHTHYLYRRLGDEDADVRRTCLMTIHFLILA-----GQ--LKVKGQLGKMALLLT 1018 (1128)
T ss_pred ------ehhhh-----------h-HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc-----cc--eeeccchhhhHhhcc
Confidence 31111 0 23345677888888999999999999988752 11 111244566777788
Q ss_pred cCChhhHhHHHHHHHHHhch
Q 001796 937 WGTDSLKEEALGFLEKVFMS 956 (1012)
Q Consensus 937 s~~~~~~~~a~~aL~~l~~~ 956 (1012)
+.+.++..-|-..+..++.-
T Consensus 1019 deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 1019 DEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred CCcchHHHHHHHHHHHHHhc
Confidence 88888888777777776653
No 386
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=27.56 E-value=4.6e+02 Score=24.64 Aligned_cols=70 Identities=11% Similarity=0.161 Sum_probs=43.5
Q ss_pred hHHHHHhccCChhhHhHHHHHHHHHhch--HhhHhhhcccccchhhhhhhhcc-----cCC---chHHHHHHHHHHHHHh
Q 001796 929 KPTLEILTWGTDSLKEEALGFLEKVFMS--KEMVDTYGSSARLLLVPLTSRNV-----HED---GSLERKAAKVLSLIER 998 (1012)
Q Consensus 929 ~~L~~ll~s~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~~l~~L~~~~~-----~~~---~~~~~~Aa~~L~~L~~ 998 (1012)
..|.+-|.+.++.++.++..+|-.++.. ++++........ ....+.+.-. +|+ ..+|..|..+++.|-.
T Consensus 41 d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~-~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 41 EYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA-QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH-HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 3666667788899999999999999986 344443332211 1112221111 222 3889999999987754
Q ss_pred c
Q 001796 999 Y 999 (1012)
Q Consensus 999 ~ 999 (1012)
.
T Consensus 120 ~ 120 (122)
T cd03572 120 Y 120 (122)
T ss_pred c
Confidence 3
No 387
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=27.15 E-value=3e+02 Score=25.84 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=49.5
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHc-CCHHHHHHHHhc-----C---CHHHHHHHHHHHHhh
Q 001796 767 GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVER-GVYPLLVNLLQI-----G---SITAKARAAALIGTL 836 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~-g~i~~Lv~lL~s-----~---~~~vk~~Aa~aL~nL 836 (1012)
++..|.+-|++.++.++.+++.+|.+++....+..+..+.+. ..|..+.+.-.. | ...||..|-.++..+
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i 117 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence 366788888888999999999999999988777777666554 234444444331 1 235788887777765
No 388
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=27.09 E-value=42 Score=42.66 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=37.5
Q ss_pred Cceecccccc-----cCCCceec--CCCccccHHHHHHHHhcCCCCCCCCCcccC
Q 001796 260 NAFKCRITGT-----VMMDPVSL--YTGTTCERAAIEAWLDRREKTDPETGVVLE 307 (1012)
Q Consensus 260 ~~~~cpi~~~-----~m~dPv~~--~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~ 307 (1012)
..-.|.||++ ..-||-+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3456888876 35567665 677889999997667789999999998875
No 389
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=27.08 E-value=61 Score=29.58 Aligned_cols=40 Identities=25% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHH
Q 001796 523 LMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSK 562 (1012)
Q Consensus 523 ~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 562 (1012)
.....+..|+..++.-..+++.|+++.|+.+|.+.|.++.
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 4555677788888888889999999999999999887654
No 390
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=61 Score=36.44 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=39.7
Q ss_pred CceecccccccCC---CceecCCCccccHHHHHHHHhc----CC---CCCCCCCcccCCCCCccCHHHHHHHHH
Q 001796 260 NAFKCRITGTVMM---DPVSLYTGTTCERAAIEAWLDR----RE---KTDPETGVVLEDTSLRSNSPLRQSIEE 323 (1012)
Q Consensus 260 ~~~~cpi~~~~m~---dPv~~~~g~t~~r~~i~~~~~~----~~---~~cp~~~~~l~~~~l~~n~~l~~~i~~ 323 (1012)
.-|-|-||.+-.. +-+.++|+|-|||+|...++.. |. -.||.++-+ ....| -.+|.++..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~---~~a~~-g~vKelvg~ 252 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG---SVAPP-GQVKELVGD 252 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc---ccCCc-hHHHHHHHH
Confidence 3688999887654 3566799999999999999873 32 247765432 22233 356666643
No 391
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=26.91 E-value=1.3e+02 Score=28.83 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=58.0
Q ss_pred cHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcC-CHH---HHHHHHHHHHhhcc
Q 001796 767 GLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIG-SIT---AKARAAALIGTLST 838 (1012)
Q Consensus 767 ~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~-~~~---vk~~Aa~aL~nLs~ 838 (1012)
++..|.+-|+++++.++..|+.+|-.+..+..+.++..+....++..|+.++.+. ... |+..+...+...+.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4667778889999999999999998888775577778888888999999988864 333 89998888887743
No 392
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=26.62 E-value=8.3e+02 Score=26.33 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=89.6
Q ss_pred ccHHHHHHHhcCC--ChhHHHHHHHHHHhccCCCC------HHHHHHHHHcCCHHHHHHHHhcCC----HHHHHHHHHHH
Q 001796 766 DGLNAIINILKSG--TMEAKENALSALFRFTDPTN------LEAQRNVVERGVYPLLVNLLQIGS----ITAKARAAALI 833 (1012)
Q Consensus 766 g~i~~Lv~lL~~~--~~~~~~~a~~aL~~Ls~~~~------~~~~~~i~~~g~i~~Lv~lL~s~~----~~vk~~Aa~aL 833 (1012)
|..+.+..++-.| ++..-+.+...|..|+...+ .+.+-.+.--..+|.+..-+.+++ ...-..+|.+|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4555566665555 55677888888888875422 112222223345777777777766 13445667888
Q ss_pred HhhccCCcCCccCCCCCcccccCCCCCccccccCCccCCCcchhhhhcCcchHHHHhc-cC---CChHHHHHHHHHHHHH
Q 001796 834 GTLSTSSPKFTDMPESAGCWCFRPSRAHLCQVHGGICSESTSFCLLKANALPHLVKLL-QG---RVHATAYEAIQTLSTL 909 (1012)
Q Consensus 834 ~nLs~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~s~~~~~~lv~~gai~~Lv~lL-~~---~~~~v~~~Al~aL~~L 909 (1012)
..++. .++ ...+....... +. ...+-...++..|+.-
T Consensus 140 a~~a~--------------------------~~~-------------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~ 180 (262)
T PF14225_consen 140 AQVAE--------------------------AQG-------------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREA 180 (262)
T ss_pred HHHHH--------------------------hCC-------------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 87732 111 11222222222 11 1222333344333322
Q ss_pred hhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHHHhchHhhHhhhcccccchhhhhhh
Q 001796 910 VQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEKVFMSKEMVDTYGSSARLLLVPLTS 976 (1012)
Q Consensus 910 ~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~~l~~L~~ 976 (1012)
.- ++. +...+..+..++.++.+.+|.....+|..++.+.+.....|..--.++..+++
T Consensus 181 f~----P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~ 238 (262)
T PF14225_consen 181 FF----PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQ 238 (262)
T ss_pred hC----chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhC
Confidence 11 111 12345578888888999999999999999999877665544332225556655
No 393
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=26.59 E-value=2.8e+02 Score=23.96 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 001796 33 KESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKY 85 (1012)
Q Consensus 33 k~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c 85 (1012)
++|=..|+.++..+.|+++.|...+ .+++........-..--++|+.|+...
T Consensus 4 ~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l 55 (82)
T cd08330 4 DQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFV 55 (82)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 4566789999999999999998444 567777777777666788999998876
No 394
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.58 E-value=74 Score=38.58 Aligned_cols=64 Identities=5% Similarity=-0.003 Sum_probs=46.5
Q ss_pred cCCCCCceecccccccCCCcee----c---CCCccccHHHHHHHHhc-----CCCCCCCCCcccCCCCCccCHHHHHHHH
Q 001796 255 YIQPLNAFKCRITGTVMMDPVS----L---YTGTTCERAAIEAWLDR-----REKTDPETGVVLEDTSLRSNSPLRQSIE 322 (1012)
Q Consensus 255 ~~~~~~~~~cpi~~~~m~dPv~----~---~~g~t~~r~~i~~~~~~-----~~~~cp~~~~~l~~~~l~~n~~l~~~i~ 322 (1012)
...+++.-.|++|..-+.+||= . .+++.+|-.||+.|.+. -++.||+| +.-|.
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC---------------~~Ci~ 154 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC---------------EECVG 154 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH---------------HHHhh
Confidence 3456778899999999998542 2 38999999999999985 23456666 55677
Q ss_pred HHHHHccccch
Q 001796 323 EWKELNYCLNI 333 (1012)
Q Consensus 323 ~~~~~~~~~~~ 333 (1012)
.||.--...++
T Consensus 155 sWsR~aqTCPi 165 (1134)
T KOG0825|consen 155 SWSRCAQTCPV 165 (1134)
T ss_pred hhhhhcccCch
Confidence 88876554443
No 395
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=26.51 E-value=1.1e+02 Score=27.95 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCC
Q 001796 562 KELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVP 601 (1012)
Q Consensus 562 ~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 601 (1012)
....+..|..|+..|+--..+++.|+++.|+++|.+.+.+
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~D 102 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTD 102 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcc
Confidence 3567888999999999889999999999999999887765
No 396
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=25.90 E-value=1.7e+02 Score=36.82 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHHHHHHHhhccHHHHHHH
Q 001796 695 EVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSLTMKLIELDGLNAIINI 774 (1012)
Q Consensus 695 ~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~~~~l~~~g~i~~Lv~l 774 (1012)
.++..+.-.++++.-.++ .. ....+|.|++-|...+...++.+..-+++.+|. +-.++-...+|.+..-
T Consensus 946 ~vra~~vvTlakmcLah~-~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~-----~YTam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHD-RL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICS-----SYTAMTDRYIPMIAAS 1014 (1529)
T ss_pred HHHHHHHHHHHHHHhhhh-HH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHH-----HHHHHHHHhhHHHHHH
Confidence 355555556665443311 11 134688888877666555555555555555544 3445666789999999
Q ss_pred hcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 001796 775 LKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALIGTL 836 (1012)
Q Consensus 775 L~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL~nL 836 (1012)
|+++++-+++.+.-.|.+|-..+-..|+..+ ++..+..++ +.+++++..|-..++.+
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~L----f~Rf~l~l~-D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQFGIVKWNGEL----FIRFMLALL-DANEDIRNDAKFYISEV 1071 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHhhhhhhcchhh----HHHHHHHHc-ccCHHHHHHHHHHHHHH
Confidence 9999999999999999998664323332221 244444444 56788998888887776
No 397
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.86 E-value=46 Score=38.09 Aligned_cols=45 Identities=13% Similarity=0.089 Sum_probs=31.0
Q ss_pred Cceeccccc-ccCCC---ceecCCCccccHHHHHHHHhc-----CCCCCCCCCc
Q 001796 260 NAFKCRITG-TVMMD---PVSLYTGTTCERAAIEAWLDR-----REKTDPETGV 304 (1012)
Q Consensus 260 ~~~~cpi~~-~~m~d---Pv~~~~g~t~~r~~i~~~~~~-----~~~~cp~~~~ 304 (1012)
....|+||. +.+.- ..+..|||.||..|..+++.. ...+||.-+-
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C 198 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGC 198 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCC
Confidence 367899998 33222 125579999999999999872 2346877443
No 398
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=25.81 E-value=77 Score=30.92 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.7
Q ss_pred CceecccccccCCCceecCCCc-----cccHHHHHHHHhc-CCCCCCCCCcccCC
Q 001796 260 NAFKCRITGTVMMDPVSLYTGT-----TCERAAIEAWLDR-REKTDPETGVVLED 308 (1012)
Q Consensus 260 ~~~~cpi~~~~m~dPv~~~~g~-----t~~r~~i~~~~~~-~~~~cp~~~~~l~~ 308 (1012)
.+-.|=||.+=.. +..-+|.. -.-++|+++|++. +...||.|+++..-
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 4567888887643 33446643 2368999999985 45689999998753
No 399
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=25.61 E-value=76 Score=30.57 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=49.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchH---HHHHHHHHH
Q 001796 683 SLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHD---VQMAAAGLL 748 (1012)
Q Consensus 683 ~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~---~~~~Aa~aL 748 (1012)
..|-.-+.+.++.++..|+.+|-.+..+.+......+....++..|.+++.+..... ++..+...|
T Consensus 45 ~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 45 RALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELL 113 (140)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Confidence 445566777899999999999999888877777777777788999999886654433 565555444
No 400
>PRK12495 hypothetical protein; Provisional
Probab=25.47 E-value=1.1e+02 Score=31.52 Aligned_cols=14 Identities=14% Similarity=0.434 Sum_probs=8.5
Q ss_pred CCceecccccccCC
Q 001796 259 LNAFKCRITGTVMM 272 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~ 272 (1012)
+-.|.||.|+..+-
T Consensus 40 msa~hC~~CG~PIp 53 (226)
T PRK12495 40 MTNAHCDECGDPIF 53 (226)
T ss_pred cchhhcccccCccc
Confidence 34667777766443
No 401
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.31 E-value=67 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=26.4
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCcccCCCCCccC
Q 001796 278 YTGTTCERAAIEAWLDRREKTDPETGVVLEDTSLRSN 314 (1012)
Q Consensus 278 ~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n 314 (1012)
.=-+|||..|-+..+ +..||.|+-.|......|-
T Consensus 26 tfEcTFCadCae~~l---~g~CPnCGGelv~RP~RPa 59 (84)
T COG3813 26 TFECTFCADCAENRL---HGLCPNCGGELVARPIRPA 59 (84)
T ss_pred EEeeehhHhHHHHhh---cCcCCCCCchhhcCcCChH
Confidence 335799999988766 4589999988877666664
No 402
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=25.28 E-value=4.4e+02 Score=22.95 Aligned_cols=73 Identities=10% Similarity=0.120 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHhhHHHHHHHHHHHHHHH
Q 001796 33 KESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKYKNKSRFYLLVKCRYIVNEIQEVTRNIG 112 (1012)
Q Consensus 33 k~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c~~~skl~l~~~~~~~~~~~~~~~~~~~ 112 (1012)
|.|=..|+.||+..-|+++.|-..+ .++..-....+.-.---+|++.|+..-.. .++.....|..+..++.
T Consensus 4 ~~hRe~LV~rI~~v~plLD~Ll~n~-~it~E~y~~V~a~~T~qdkmRkLld~v~a--------kG~~~k~~F~~iL~e~~ 74 (85)
T cd08324 4 KSNRELLVTHIRNTQCLVDNLLKND-YFSTEDAEIVCACPTQPDKVRKILDLVQS--------KGEEVSEYFLYLLQQLA 74 (85)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhccC-CccHHHHHHHHhCCCCHHHHHHHHHHHHh--------cCchHHHHHHHHHHHHH
Confidence 4555789999999999999998554 34555555555555555666666554211 13344455555555555
Q ss_pred HH
Q 001796 113 RS 114 (1012)
Q Consensus 113 ~~ 114 (1012)
.+
T Consensus 75 ~~ 76 (85)
T cd08324 75 DA 76 (85)
T ss_pred Hh
Confidence 44
No 403
>PHA02862 5L protein; Provisional
Probab=25.10 E-value=54 Score=31.27 Aligned_cols=57 Identities=14% Similarity=0.252 Sum_probs=35.0
Q ss_pred ecccccccCCCceecCCCc-----cccHHHHHHHHhc-CCCCCCCCCcccCCCCCccCHHHHHHHHHHHH
Q 001796 263 KCRITGTVMMDPVSLYTGT-----TCERAAIEAWLDR-REKTDPETGVVLEDTSLRSNSPLRQSIEEWKE 326 (1012)
Q Consensus 263 ~cpi~~~~m~dPv~~~~g~-----t~~r~~i~~~~~~-~~~~cp~~~~~l~~~~l~~n~~l~~~i~~~~~ 326 (1012)
.|=||.+-=.|++ -+|+. -.-++|+++|+.. +...||.|+.+..-+.. ...+.+|.-
T Consensus 4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~------yKpf~kW~~ 66 (156)
T PHA02862 4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT------YVSFKKWNW 66 (156)
T ss_pred EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc------cccHHHhhc
Confidence 4666666543332 34432 2347899999974 55689999998753221 224577753
No 404
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=25.03 E-value=2e+02 Score=23.69 Aligned_cols=42 Identities=19% Similarity=0.432 Sum_probs=29.0
Q ss_pred HHHHHhhhhhhccccchhhhHHHHHHHHHhCCCCChhHHHHHHHHHHH
Q 001796 152 IVDKLNQGLRDQKLDQGFANDMLEEIARAVGVPVEPSEISKELASFRR 199 (1012)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~E~~~l~~ 199 (1012)
+++-|.+-+.+....| .+++|++.+|+. |+.....-+..|++
T Consensus 11 vL~~I~~~~~~~G~~P-----t~rEIa~~~g~~-S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 11 VLEFIREYIEENGYPP-----TVREIAEALGLK-STSTVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHHHHHSS--------HHHHHHHHTSS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC-----CHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 5555555555555544 458999999997 88888888887764
No 405
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=24.78 E-value=5.4e+02 Score=23.47 Aligned_cols=84 Identities=18% Similarity=0.320 Sum_probs=44.7
Q ss_pred ccchhcchHHHHHHHHHHHHHHHhh-hhhchH-HHHHHHhhhhhh-ccccchhhhHHHHHHHHHhCCC--CChhHHHHHH
Q 001796 120 LANTEVLSEISDQMNRLQNEMQRVE-FKASQS-QIVDKLNQGLRD-QKLDQGFANDMLEEIARAVGVP--VEPSEISKEL 194 (1012)
Q Consensus 120 ~~~~~~~~~v~e~v~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~E~ 194 (1012)
+...+...++.|+++.+..++-+-+ ...+.. .+++++..-.++ +..-+.-.+..++.+...+++. ++..+++.++
T Consensus 13 ~~gaG~~a~~~ek~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rv 92 (108)
T COG3937 13 LIGAGLAAETAEKVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERV 92 (108)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHH
Confidence 3344566788889999888876543 332222 266665543332 1111222234555556666643 2335566666
Q ss_pred HHHHHHHHH
Q 001796 195 ASFRREKEE 203 (1012)
Q Consensus 195 ~~l~~~~~~ 203 (1012)
..|++++..
T Consensus 93 d~Lerqv~~ 101 (108)
T COG3937 93 DALERQVAD 101 (108)
T ss_pred HHHHHHHHH
Confidence 777666644
No 406
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=24.77 E-value=1.1e+03 Score=27.07 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC-----ChHHHHHHHHHHHhccc-ccchhh-HhhhcCC
Q 001796 474 PVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG-----AESSRILMMKALLSMEL-VDSNLE-LLGKEGI 546 (1012)
Q Consensus 474 ~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~aL~~Ls~-~~~~~~-~i~~~g~ 546 (1012)
++.++...|...|.|+...++..+....+......+++.+... ...++..-.+.|+-+.. ....|. .+++.++
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 3567888899999999888888888888888777777776432 22344555555655544 234444 4556899
Q ss_pred hHHHHhhhcCC---------Ch------hHHHHHHHHHHHhcCCCc
Q 001796 547 IPPLLGLVGSG---------NF------QSKELSLSVLVKLSGCSK 577 (1012)
Q Consensus 547 i~~Lv~lL~~~---------~~------~~~~~a~~~L~~Ls~~~~ 577 (1012)
++.+-+.|.+. ++ +....++.+++|+..+..
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~ 234 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSD 234 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccc
Confidence 99999888531 11 345577888888886543
No 407
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=18 Score=38.38 Aligned_cols=39 Identities=18% Similarity=0.070 Sum_probs=30.2
Q ss_pred ceecccccccCCCceecCCCccc-cHHHHHHHHhcCC--CCCCCCCccc
Q 001796 261 AFKCRITGTVMMDPVSLYTGTTC-ERAAIEAWLDRRE--KTDPETGVVL 306 (1012)
Q Consensus 261 ~~~cpi~~~~m~dPv~~~~g~t~-~r~~i~~~~~~~~--~~cp~~~~~l 306 (1012)
+..|-||++.=+|=|.++|||.. |-+| |. ..||.||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 78999999999999999999943 2223 43 3699998753
No 408
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=23.64 E-value=2e+02 Score=25.83 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=51.6
Q ss_pred CcchHHHHhccCCChHHHHHHHHHHHHHhhccchhhhhHHhhhcCCchHHHHHhccCChhhHhHHHHHHHH
Q 001796 882 NALPHLVKLLQGRVHATAYEAIQTLSTLVQEGCQQRGVNVLHQEEAIKPTLEILTWGTDSLKEEALGFLEK 952 (1012)
Q Consensus 882 gai~~Lv~lL~~~~~~v~~~Al~aL~~L~~~~~~~~~~~~i~~~~~v~~L~~ll~s~~~~~~~~a~~aL~~ 952 (1012)
..+..|++-...++......++.-|..|+. ++.+...+.+.|+++.|-++-...++..+.....++..
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~---~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLK---SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHh---CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 344445555555666788889999999988 58899999999999998887777778877776666543
No 409
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=23.53 E-value=20 Score=26.58 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=19.6
Q ss_pred CCceecccccccCCCceecCCCccccHHHHHHHHhcCCCCCCCCCc
Q 001796 259 LNAFKCRITGTVMMDPVSLYTGTTCERAAIEAWLDRREKTDPETGV 304 (1012)
Q Consensus 259 ~~~~~cpi~~~~m~dPv~~~~g~t~~r~~i~~~~~~~~~~cp~~~~ 304 (1012)
..+|.|+ .||++|+... .--+.....||.|+.
T Consensus 3 ~Yey~C~------------~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 3 IYEYRCE------------ECGHEFEVLQ--SISEDDPVPCPECGS 34 (42)
T ss_pred CEEEEeC------------CCCCEEEEEE--EcCCCCCCcCCCCCC
Confidence 3577776 5777777532 111123457999988
No 410
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=23.48 E-value=81 Score=26.71 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=21.9
Q ss_pred ceecccccccC-----CCceec--CCCccccHHHHHHHHhcCCCCCCCCCcccCC
Q 001796 261 AFKCRITGTVM-----MDPVSL--YTGTTCERAAIEAWLDRREKTDPETGVVLED 308 (1012)
Q Consensus 261 ~~~cpi~~~~m-----~dPv~~--~~g~t~~r~~i~~~~~~~~~~cp~~~~~l~~ 308 (1012)
.-.|.||++=. -+|-+. .||.-.||.|.+--.++|+..||.|+.+...
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 44677776522 234333 5677889999998888999999999877653
No 411
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.44 E-value=5.6e+02 Score=29.27 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhc-----CCCchHHHHHHHHHHhccCCCCHH-----------
Q 001796 694 SEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLE-----NDAKHDVQMAAAGLLANLPKSELS----------- 757 (1012)
Q Consensus 694 ~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~-----~~~~~~~~~~Aa~aL~nL~~~~~~----------- 757 (1012)
..-|.+|...++.++...++.....+ ...+-.++. ...+...+..|...+..|+.....
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~-----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~ 299 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSIL-----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNEL 299 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TT
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccc
Confidence 44677788899888755222222221 111222332 223455666677766666653321
Q ss_pred -HHHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Q 001796 758 -LTMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSITAKARAAALI 833 (1012)
Q Consensus 758 -~~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~vk~~Aa~aL 833 (1012)
.-..+....++|-|. --.+..|-++..|+..+..+...-.++ . -.+++|.++..|.+++.-|...||.++
T Consensus 300 v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~---~--l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 300 VDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE---Q--LLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH---H--HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH---H--HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 113344445555544 111335668889999988886642222 1 224799999999999999999999875
No 412
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.07 E-value=3.9e+02 Score=31.66 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=56.2
Q ss_pred CcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccC---CC----------CHHHHHHHHhhccHHHHHHHhcC-
Q 001796 712 PEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLP---KS----------ELSLTMKLIELDGLNAIINILKS- 777 (1012)
Q Consensus 712 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~---~~----------~~~~~~~l~~~g~i~~Lv~lL~~- 777 (1012)
+.+....+.+.+.|+.|+.+|....+.+++.+|+..|..+. .+ .....+.+.....+..|+..+-.
T Consensus 51 ~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~ 130 (475)
T PF04499_consen 51 PTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNS 130 (475)
T ss_pred hHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcC
Confidence 34555566778999999999987767889988887666552 21 13456677777888888886542
Q ss_pred CChhHHHHHHHHHHhcc
Q 001796 778 GTMEAKENALSALFRFT 794 (1012)
Q Consensus 778 ~~~~~~~~a~~aL~~Ls 794 (1012)
.......++++++..|-
T Consensus 131 ~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 131 QGGSSLVNGVSILIELI 147 (475)
T ss_pred CCcchHHHHHHHHHHHH
Confidence 33455666666665554
No 413
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.73 E-value=3.9e+02 Score=30.12 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=67.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCCcHHHHHHHhcC-------ChHHHHHHHHHHHhcccccchhhHh
Q 001796 469 TLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGWYKPLIDRIIQG-------AESSRILMMKALLSMELVDSNLELL 541 (1012)
Q Consensus 469 ~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~aL~~Ls~~~~~~~~i 541 (1012)
..+.+.+...+..|...|..=. .-...+|.++.++.++ +..........+..|..++.-....
T Consensus 185 ~a~~~~~~~~r~~aL~sL~tD~----------gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 185 EALVGSNEEKRREALQSLRTDP----------GLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHhCCCHHHHHHHHHHhccCC----------CchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 3333445555555554443221 1223566777776543 2333334444455555555433332
Q ss_pred hhcCChHHHHhhhcC----------CChhHHHHHHHHHHHhcCCCchHHHHHHcCChHHHHHHhhcCCCChhHHHHHHHH
Q 001796 542 GKEGIIPPLLGLVGS----------GNFQSKELSLSVLVKLSGCSKNRELISAAGGIPQVLELMFSSHVPSNIIVKCSEI 611 (1012)
Q Consensus 542 ~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~a~~~ 611 (1012)
.=.-.+|+++..+-+ ..-.+|+.|+.+|..++..-.+...-.....+..+.+.+.+.........-|...
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 223477888876621 1136999999999999853222211122233345666665554433323344444
Q ss_pred HHHh
Q 001796 612 LEKL 615 (1012)
Q Consensus 612 L~nL 615 (1012)
|..|
T Consensus 335 L~~l 338 (343)
T cd08050 335 LSAL 338 (343)
T ss_pred HHHh
Confidence 4433
No 414
>PRK10807 paraquat-inducible protein B; Provisional
Probab=22.64 E-value=7.5e+02 Score=29.92 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHcccchhhhHHHHHHHHHHhhHHHHHHHHhhcc----CCCcHHHHHHH-HHHHHHHHHHHHHHHHhc
Q 001796 12 LAVLTNQVIKTAQAAKNVVYEKESFKVLSKHLFDIESVLKELQLQK----LNDSQAVRLAL-ESLEADVEKANNLVEKYK 86 (1012)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~k~~~~~l~r~~~~l~~lleel~~~~----~~~~~~~~~~l-~~l~~~l~~a~~l~~~c~ 86 (1012)
++++...+.+|....+.+++.+ ...++-.-++-+.-.++++...- .-..+.....+ .+|..+|+.+...++..+
T Consensus 415 l~~l~~~~~~il~kin~lple~-i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~ 493 (547)
T PRK10807 415 LAQIQQKLMEALDKINNLPLNP-MIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQ 493 (547)
T ss_pred HHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5667777777777666676544 44445555555555555443210 00122344455 677777777777777777
Q ss_pred ccchhHH
Q 001796 87 NKSRFYL 93 (1012)
Q Consensus 87 ~~skl~l 93 (1012)
++|.+|-
T Consensus 494 ~~s~~~~ 500 (547)
T PRK10807 494 PGSPAYN 500 (547)
T ss_pred CCChHHH
Confidence 7777764
No 415
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=22.34 E-value=1.1e+03 Score=26.14 Aligned_cols=201 Identities=11% Similarity=0.101 Sum_probs=120.0
Q ss_pred hccCchHHHHHHhccCCCHHHHHHHHHHHHHHhccccchhhhhhhc-CCcccccccc-ccCChhhHHH---HHHHHHHhh
Q 001796 370 SIGGITDIIISILGSSHNKDVKMKILITLKQLVKGHARNKEKVIDY-GGWDHIVPCL-GRDPSISLAA---VKLLYELMQ 444 (1012)
Q Consensus 370 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~-g~i~~lv~lL-~~~~~~~~~A---~~~L~~ls~ 444 (1012)
..+|..+.++..+.. .+-+.+..++.....+-+-+.+.|..-++. .+-|.++..| ......++.| -..|.+..+
T Consensus 76 ~~~~~l~~lI~~l~~-l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcir 154 (342)
T KOG1566|consen 76 YNADVLSLLIQHLPK-LEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIR 154 (342)
T ss_pred HhCCchHHHHHhhhc-ccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHh
Confidence 445666777776654 344555566555555544444444444432 2233333333 1111123333 244555544
Q ss_pred ccCCchHHhhhhhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhHHHHhhcCC----cHHHHHHHhcCChHH
Q 001796 445 DRSGWNVAVCRKLSQQCSGILFLVTLIKGPVRESAECAEKILQQLFDVDEENFCRAAKSGW----YKPLIDRIIQGAESS 520 (1012)
Q Consensus 445 ~~~~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~~~i~~~g~----i~~Lv~lL~~~~~~~ 520 (1012)
+. .+ .+++-.+..........+.+.-++...|..+...+...+......+..... .+.--.++.+++--+
T Consensus 155 he-----~L-akiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvt 228 (342)
T KOG1566|consen 155 HE-----FL-AKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVT 228 (342)
T ss_pred hH-----HH-HHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceeh
Confidence 32 22 233344455666666666666677777777777665544333333333332 223455778899999
Q ss_pred HHHHHHHHHhcccccchhhHhh----hcCChHHHHhhhcCCChhHHHHHHHHHHHhcCCCc
Q 001796 521 RILMMKALLSMELVDSNLELLG----KEGIIPPLLGLVGSGNFQSKELSLSVLVKLSGCSK 577 (1012)
Q Consensus 521 ~~~a~~aL~~Ls~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 577 (1012)
+..+...|+.+-.+..|...+. +...+..+..+|++....++-.|.-+..-....+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 9999999999999877765544 34678888999998888889889888877766543
No 416
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.01 E-value=2.6e+02 Score=34.20 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=87.3
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHhccCCCcchHHhhhcCCChHHHHHhhcCCCchHHHHHHHHHHhccCCCCHHH
Q 001796 679 ANGVSLILSLLDDTDSEVREIAINLLFLFSHHEPEGVVEYLLKPKRLEALVGFLENDAKHDVQMAAAGLLANLPKSELSL 758 (1012)
Q Consensus 679 ~g~v~~Lv~ll~~~~~~v~~~a~~~L~~ls~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~Aa~aL~nL~~~~~~~ 758 (1012)
..+++.|..-+++.+..+|+.++..+..++...+. ..++...+|.+-++.....+..++.+++.++..+...
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~----~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---- 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESIDV----PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---- 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH----HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----
Confidence 33456777777888888999999988888765332 2455667888877765555778888888888777621
Q ss_pred HHHHHhhccHHHHHHHhcCCChhHHHHHHHHHHhccCCCCHHHHHHHHHcCCHHHHHHHHhcCCH
Q 001796 759 TMKLIELDGLNAIINILKSGTMEAKENALSALFRFTDPTNLEAQRNVVERGVYPLLVNLLQIGSI 823 (1012)
Q Consensus 759 ~~~l~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~ 823 (1012)
.+...--.-+.++.+..+..++.+.-..+.+..++.... +. ...+.-..++|.++-+...+.-
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~-~~-g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALII-YS-GVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhc-cc-ceeeehhhhhhhhhhhhhcccc
Confidence 111111123555666666778888777777776665431 11 1234455688998888876643
No 417
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=21.55 E-value=8.6e+02 Score=27.73 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=67.9
Q ss_pred hhhHHHHHHHHHHhhccCCchHHhhhhhhhccChHHHHHHHhc------CCCHHHHHHHHHHHHHhhcCChhhH------
Q 001796 430 SISLAAVKLLYELMQDRSGWNVAVCRKLSQQCSGILFLVTLIK------GPVRESAECAEKILQQLFDVDEENF------ 497 (1012)
Q Consensus 430 ~~~~~A~~~L~~ls~~~~~~~~~~~~~i~~~~g~i~~Lv~lL~------~~~~~~~~~A~~~L~~La~~~~~~~------ 497 (1012)
..+..|..+|..+++.-. .....+ ....+..+|+ +.++..+..|..++..++......+
T Consensus 226 TrR~AA~dfl~~L~~~~~----~~v~~i-----~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~ 296 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFE----KQVTSI-----LMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQT 296 (370)
T ss_dssp SHHHHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B
T ss_pred CcHHHHHHHHHHHHHHHh----HHHHHH-----HHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccc
Confidence 445677888888876321 101111 1122233333 3466788889999989986553322
Q ss_pred ------HHHhhcCCcHHHHHHHhcCChHHHHHHHHHHHhcccccchhhHhhhcCChHHHHhhhcCCChhHHHHHHHHH
Q 001796 498 ------CRAAKSGWYKPLIDRIIQGAESSRILMMKALLSMELVDSNLELLGKEGIIPPLLGLVGSGNFQSKELSLSVL 569 (1012)
Q Consensus 498 ------~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 569 (1012)
..+...-++|.|- -=.+..+-.|..|++.+......- .+..+ .+++|.++..|.+++..+...|+.++
T Consensus 297 ~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 297 NELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred cccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1122222233222 001234557777777776654421 12222 45899999999999888888887664
No 418
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=21.38 E-value=32 Score=26.68 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=14.1
Q ss_pred CCCccccHHHHHHHHhcCCCCCCCCCc
Q 001796 278 YTGTTCERAAIEAWLDRREKTDPETGV 304 (1012)
Q Consensus 278 ~~g~t~~r~~i~~~~~~~~~~cp~~~~ 304 (1012)
.||++|+... ..-+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEVLQ--KMSDDPLATCPECGG 34 (52)
T ss_pred CCCCEeEEEE--ecCCCCCCCCCCCCC
Confidence 5777777321 111123457999987
No 419
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=21.09 E-value=78 Score=22.02 Aligned_cols=10 Identities=20% Similarity=0.099 Sum_probs=7.5
Q ss_pred CCCCCCCCcc
Q 001796 296 EKTDPETGVV 305 (1012)
Q Consensus 296 ~~~cp~~~~~ 305 (1012)
...||.|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5589998774
No 420
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=20.72 E-value=43 Score=25.94 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=11.0
Q ss_pred CCCCceecccccc
Q 001796 257 QPLNAFKCRITGT 269 (1012)
Q Consensus 257 ~~~~~~~cpi~~~ 269 (1012)
..|++|.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 3689999999975
No 421
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=20.61 E-value=4.1e+02 Score=22.58 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhhHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHh-cccchhHHH
Q 001796 33 KESFKVLSKHLFDIESVLKELQLQKLNDSQAVRLALESLEADVEKANNLVEKY-KNKSRFYLL 94 (1012)
Q Consensus 33 k~~~~~l~r~~~~l~~lleel~~~~~~~~~~~~~~l~~l~~~l~~a~~l~~~c-~~~skl~l~ 94 (1012)
++|-..|++.+..+.++++.|...+ .+++.-...+......-++++.|+..- +.|++.|-.
T Consensus 5 ~~~r~~Lv~~l~~~~~ild~L~~~~-vlt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~~ 66 (85)
T PF00619_consen 5 RKNRQELVEDLDDLDDILDHLLSRG-VLTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFDI 66 (85)
T ss_dssp HHTHHHHHHHSSHHHHHHHHHHHTT-SSSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHhHHHHHHHhCcHHHHHHHHHHCC-CCCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHHH
Confidence 4577889999999999999998554 567777777777666788999998874 456655443
No 422
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.38 E-value=5.9e+02 Score=27.74 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=37.6
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhhcCChhhH-HHHhhcCCcHHHHHHH
Q 001796 462 SGILFLVTLIKGPVRESAECAEKILQQLFDVDEENF-CRAAKSGWYKPLIDRI 513 (1012)
Q Consensus 462 g~i~~Lv~lL~~~~~~~~~~A~~~L~~La~~~~~~~-~~i~~~g~i~~Lv~lL 513 (1012)
=.+|.+..++.+.+.+.+..++.+|..+....+... ..+...|..+.+-+.|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al 171 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDAL 171 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHH
Confidence 357999999999999999999999999875443333 3356666555554444
Done!