BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001797
(1012 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 640 KQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE----------LERARELFDGI 689
K+G + EA +L+++ +G+ + YN L+ +C E L R ++F +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQM 96
Query: 690 FAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNM 749
+ P T+T + AF +V +M + G+ P Y + G CR G+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 750 EKALSLFLEM 759
+KA + M
Sbjct: 157 DKAYEVDAHM 166
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 325 KQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGE----------IEKAKGLMTEM 374
K+G++ EA RL +E G++L+ + YN L+ +C E + + + +M
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQM 96
Query: 375 LRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDL 434
+ + P+ T+ + +++ A++++ MK + P + + G CR D
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 435 EGACRVFEEM 444
+ A V M
Sbjct: 157 DKAYEVDAHM 166
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%)
Query: 311 PNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGL 370
PNE +T + + + + AF + +M FGI+ L +Y + G C+ G+ +KA +
Sbjct: 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162
Query: 371 MTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMK 410
M+ + P+ +L++ N K Y+ L ++
Sbjct: 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 390 IEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACR---------- 439
++ C ++ ++ +A L + ++ + + Y NV+ L CS E A
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVL---LYVCSLAEAATESSPNPGLSRG 89
Query: 440 --VFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISG 497
+F++MI + PN +T + + ++ E A +++K M G+ P + Y + G
Sbjct: 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFG 149
Query: 498 LCK 500
C+
Sbjct: 150 FCR 152
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 604 SRCGKIHEALEVFSELQDKGLVPDVITYSSLI---------SGFCKQGFIKEAFQLHEKM 654
S+ G + EAL ++ E + G+ Y+ L+ + + F + ++M
Sbjct: 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96
Query: 655 CESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNL 714
+ PN T+ + E A ++ + A G+ P + +Y + G+C+ G+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 715 TEAFQLVNEM 724
+A+++ M
Sbjct: 157 DKAYEVDAHM 166
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 18/138 (13%)
Query: 740 VDGCCRDGNMEKALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIFEANK---------L 789
+D C + G++ +AL L+ E + G+ S +N LL ++ E++ +
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 790 LEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV----LKPNFRTYTSLLH 845
+ M + PN T+T + KD + +M K++ ++P R+Y L
Sbjct: 93 FKQMIVDKVVPNEATFT----NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148
Query: 846 GYAGIGKRSEMFALFDEM 863
G+ G + + + M
Sbjct: 149 GFCRKGDADKAYEVDAHM 166
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 640 KQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE----------LERARELFDGI 689
K+G + EA +L+++ +G+ + YN L+ +C E L R ++F
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQX 96
Query: 690 FAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNM 749
+ P T+T + AF V + + G+ P Y + G CR G+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 750 EKA 752
+KA
Sbjct: 157 DKA 159
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 311 PNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKA 367
PNE +T + + + + AF + FGI+ L +Y + G C+ G+ +KA
Sbjct: 103 PNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 325 KQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGE----------IEKAKGLMTEM 374
K+G++ EA RL +E G++L+ + YN L+ +C E + + + +
Sbjct: 38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFKQX 96
Query: 375 LRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDL 434
+ + P+ T+ + +++ A++ + K + P + + G CR D
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 435 EGACRV 440
+ A V
Sbjct: 157 DKAYEV 162
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 604 SRCGKIHEALEVFSELQDKGLVPDVITYSSLI---------SGFCKQGFIKEAFQLHEKM 654
S+ G + EAL ++ E + G+ Y+ L+ + + F + ++
Sbjct: 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQX 96
Query: 655 CESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNL 714
+ PN T+ + E A + A G+ P + +Y + G+C+ G+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 715 TEAFQL 720
+A+++
Sbjct: 157 DKAYEV 162
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 593 LKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQ----GFIKEAF 648
L Y+ ++ G +R G E + V ++D GL PD+++Y++ + +Q G I+
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 649 QLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGI-FAKGLTPTVVTYTTIIDG 707
E+M + G+ + L+ ++ L+ ++ L P V T + D
Sbjct: 225 ---EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281
Query: 708 YCKSGNLT 715
Y K G ++
Sbjct: 282 YAKDGRVS 289
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 455 VYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDA---RSCL 511
+Y ++ RQ F+E + +L + G+ PD+ Y + + C ++ +DA CL
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ--CMGRQDQDAGTIERCL 224
Query: 512 VEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEM-LNCGIAPNDIIYTTLIDGHCK 570
+M+ GLK + E + ++A + L + P L D + K
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 571 EGNV 574
+G V
Sbjct: 285 DGRV 288
>pdb|3L6A|A Chain A, Crystal Structure Of The C-Terminal Region Of Human P97
Length = 364
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 703 TIIDGYCKSGNLTEAFQLVNEM-PSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQ 761
T++ Y SGN EA V EM + P+ ++ D + EKA SL + Q
Sbjct: 17 TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQ 76
Query: 762 KGLASTSSF-NALLNGLCKSQKI 783
+G+A++ +F A LN L + K+
Sbjct: 77 EGIATSDNFMQAFLNVLDQCPKL 99
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 26/168 (15%)
Query: 827 EMQKRVLKPN--FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK 884
E Q +++K + R + L+ + G G + A D+++E V D + + + ++K
Sbjct: 132 EAQSQLIKSDEXQRLRSQALNAF-GSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIK 189
Query: 885 EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944
EG K I ++ + N N E FYK+ L ++GD E+ LS
Sbjct: 190 EGEPRKAIS---DLKAASKLKNDNT-----------EAFYKISTLYYQLGDHELSLSEVR 235
Query: 945 CCILISSVY--------EAGNIDKATRFLESMIKFGWVADSTVMMDLV 984
C+ + + + ++K E +I+ G D+T + V
Sbjct: 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 283
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 26/162 (16%)
Query: 827 EMQKRVLKPN--FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK 884
E Q +++K + R + L+ + G G + A D+++E V D + + + ++K
Sbjct: 132 EAQSQLIKSDEMQRLRSQALNAF-GSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIK 189
Query: 885 EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944
EG K I ++ + N N E FYK+ L ++GD E+ LS
Sbjct: 190 EGEPRKAIS---DLKAASKLKNDNT-----------EAFYKISTLYYQLGDHELSLSEVR 235
Query: 945 CCILISSVY--------EAGNIDKATRFLESMIKFGWVADST 978
C+ + + + ++K E +I+ G D+T
Sbjct: 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277
>pdb|3SCM|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
Length = 245
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 610 HEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQL-HEKMCESGITPNIVTYNA 668
H+ + + + KGL + Y S +G ++G + E + EK +T N
Sbjct: 31 HDTMYWYRQDSGKGLR---LIYYSYGAGSTEKGDLSEGYDASREKKSSFSLTVTSAQKNE 87
Query: 669 LIDGLCKSGELERARELFDGIFAKGLTPTVV 699
+ LC SG L RE+F F KG TVV
Sbjct: 88 MAVFLCASGSLLDVREVF---FGKGTRLTVV 115
>pdb|3QI9|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 243
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 610 HEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQL-HEKMCESGITPNIVTYNA 668
H+ + + + KGL + Y S +G ++G + E + EK +T N
Sbjct: 29 HDTMYWYRQDSGKGLR---LIYYSYGAGSTEKGDLSEGYDASREKKSSFSLTVTSAQKNE 85
Query: 669 LIDGLCKSGELERARELFDGIFAKGLTPTVV 699
+ LC SG L RE+F F KG TVV
Sbjct: 86 MAVFLCASGSLLDVREVF---FGKGTRLTVV 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,685,483
Number of Sequences: 62578
Number of extensions: 1182640
Number of successful extensions: 2801
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2772
Number of HSP's gapped (non-prelim): 29
length of query: 1012
length of database: 14,973,337
effective HSP length: 108
effective length of query: 904
effective length of database: 8,214,913
effective search space: 7426281352
effective search space used: 7426281352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)