Query 001797
Match_columns 1012
No_of_seqs 888 out of 5046
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 09:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.2E-87 1.3E-91 813.5 73.6 753 154-1011 50-804 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.8E-84 6.1E-89 790.2 73.3 711 274-1011 47-772 (857)
3 PLN03218 maturation of RBCL 1; 100.0 9.1E-69 2E-73 635.8 70.2 547 187-768 366-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.4E-67 3E-72 625.8 70.9 548 309-873 366-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 8.1E-62 1.7E-66 578.3 52.4 555 380-1011 84-642 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-60 2.6E-65 568.2 52.2 473 155-660 87-560 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.8E-51 3.8E-56 517.7 111.6 848 79-970 34-899 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.4E-50 3E-55 509.6 111.2 867 87-1001 10-895 (899)
9 PRK11447 cellulose synthase su 100.0 8.2E-30 1.8E-34 318.6 80.3 646 288-970 38-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1.1E-28 2.3E-33 308.6 81.6 662 157-900 30-739 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.1E-25 2.5E-30 266.8 75.2 655 257-970 58-739 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-25 4.4E-30 264.7 76.8 262 663-935 477-739 (987)
13 KOG2002 TPR-containing nuclear 100.0 2.5E-25 5.5E-30 244.0 68.8 698 277-990 40-817 (1018)
14 KOG2002 TPR-containing nuclear 100.0 2.3E-22 4.9E-27 221.1 71.2 595 294-902 146-799 (1018)
15 KOG4626 O-linked N-acetylgluco 100.0 1.2E-24 2.6E-29 225.9 38.6 439 491-948 51-495 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 6.3E-24 1.4E-28 220.5 37.9 449 458-925 53-508 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1E-19 2.2E-24 214.1 55.4 428 493-941 132-574 (615)
18 KOG0495 HAT repeat protein [RN 99.9 6E-17 1.3E-21 170.4 67.0 617 292-947 265-889 (913)
19 KOG0495 HAT repeat protein [RN 99.9 9.9E-17 2.1E-21 168.8 64.9 610 326-971 264-880 (913)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-19 4.2E-24 211.8 50.9 430 525-973 129-573 (615)
21 KOG2076 RNA polymerase III tra 99.9 3.7E-17 8E-22 179.5 63.6 641 286-932 147-891 (895)
22 KOG2076 RNA polymerase III tra 99.9 8E-17 1.7E-21 176.9 63.7 634 257-898 153-892 (895)
23 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.4E-24 203.3 36.8 302 671-978 43-354 (389)
24 PRK11788 tetratricopeptide rep 99.9 2.3E-19 5E-24 200.8 36.7 294 603-902 45-348 (389)
25 PRK15174 Vi polysaccharide exp 99.9 3.1E-18 6.6E-23 200.3 46.4 421 533-978 15-442 (656)
26 PRK15174 Vi polysaccharide exp 99.9 1.8E-18 3.8E-23 202.3 43.3 369 595-986 44-419 (656)
27 PRK10049 pgaA outer membrane p 99.9 1.2E-17 2.7E-22 199.8 51.2 407 532-951 24-469 (765)
28 PRK10049 pgaA outer membrane p 99.9 8.4E-18 1.8E-22 201.2 49.3 412 555-980 12-463 (765)
29 PRK14574 hmsH outer membrane p 99.9 1.5E-16 3.2E-21 185.7 54.4 438 497-946 43-521 (822)
30 PRK14574 hmsH outer membrane p 99.8 1.3E-15 2.9E-20 177.8 55.7 447 427-907 43-518 (822)
31 KOG2003 TPR repeat-containing 99.8 1E-15 2.2E-20 154.0 38.4 479 386-887 204-709 (840)
32 KOG2003 TPR repeat-containing 99.8 1.9E-14 4.1E-19 145.0 40.6 448 493-951 206-702 (840)
33 KOG4318 Bicoid mRNA stability 99.8 1.6E-13 3.4E-18 150.2 50.2 572 380-986 201-823 (1088)
34 KOG1915 Cell cycle control pro 99.8 1.8E-12 4E-17 132.0 53.0 462 358-865 83-584 (677)
35 KOG1173 Anaphase-promoting com 99.7 5.8E-14 1.3E-18 146.7 40.0 508 417-952 15-532 (611)
36 KOG4422 Uncharacterized conser 99.7 3.2E-13 6.9E-18 135.7 43.4 357 277-657 206-590 (625)
37 KOG4318 Bicoid mRNA stability 99.7 4E-12 8.7E-17 139.4 55.2 527 156-724 26-622 (1088)
38 KOG1915 Cell cycle control pro 99.7 7.5E-13 1.6E-17 134.8 45.7 421 535-970 85-535 (677)
39 KOG4422 Uncharacterized conser 99.7 1.1E-12 2.3E-17 132.0 44.2 361 345-727 204-590 (625)
40 KOG4162 Predicted calmodulin-b 99.7 1.2E-11 2.6E-16 134.5 52.4 436 487-943 322-788 (799)
41 KOG0547 Translocase of outer m 99.7 1.4E-13 3E-18 140.9 35.1 411 492-935 119-565 (606)
42 KOG0985 Vesicle coat protein c 99.7 2E-09 4.4E-14 119.5 66.7 692 157-926 483-1268(1666)
43 KOG1155 Anaphase-promoting com 99.7 1.4E-12 3.1E-17 132.8 39.4 362 555-935 161-535 (559)
44 KOG2047 mRNA splicing factor [ 99.7 4.2E-10 9.1E-15 119.6 57.6 599 138-818 82-710 (835)
45 KOG0547 Translocase of outer m 99.7 5.4E-13 1.2E-17 136.7 34.7 222 567-795 335-565 (606)
46 KOG4162 Predicted calmodulin-b 99.7 2.3E-10 5.1E-15 124.6 56.5 506 430-970 239-782 (799)
47 PRK10747 putative protoheme IX 99.7 2.5E-13 5.4E-18 149.9 34.9 285 676-971 97-390 (398)
48 KOG1126 DNA-binding cell divis 99.7 3.2E-14 6.9E-19 152.2 26.1 204 758-970 412-619 (638)
49 KOG1173 Anaphase-promoting com 99.6 3E-12 6.5E-17 134.1 39.0 284 590-880 241-530 (611)
50 KOG1126 DNA-binding cell divis 99.6 4E-14 8.7E-19 151.4 24.3 288 643-944 334-626 (638)
51 PF13429 TPR_15: Tetratricopep 99.6 1.1E-15 2.4E-20 161.3 12.4 259 704-970 14-276 (280)
52 KOG1155 Anaphase-promoting com 99.6 5.8E-12 1.3E-16 128.5 38.2 362 590-971 161-536 (559)
53 TIGR00540 hemY_coli hemY prote 99.6 1.1E-12 2.4E-17 145.7 35.2 290 674-970 95-398 (409)
54 KOG3785 Uncharacterized conser 99.6 5.3E-12 1.2E-16 123.9 34.1 447 531-1011 30-489 (557)
55 KOG1127 TPR repeat-containing 99.6 1.4E-09 3.1E-14 121.2 56.5 663 258-951 473-1188(1238)
56 TIGR00540 hemY_coli hemY prote 99.6 3.1E-12 6.7E-17 142.1 35.6 290 605-900 96-398 (409)
57 KOG3616 Selective LIM binding 99.6 2E-08 4.3E-13 108.0 61.3 384 357-793 741-1181(1636)
58 PRK10747 putative protoheme IX 99.6 4.7E-12 1E-16 139.8 35.9 284 606-900 97-389 (398)
59 KOG2047 mRNA splicing factor [ 99.6 4.5E-08 9.7E-13 104.5 64.6 220 663-887 477-709 (835)
60 KOG0985 Vesicle coat protein c 99.6 2.1E-08 4.7E-13 111.6 61.8 609 318-970 486-1222(1666)
61 KOG1127 TPR repeat-containing 99.6 3.3E-08 7.2E-13 110.7 63.5 649 291-970 471-1174(1238)
62 KOG1156 N-terminal acetyltrans 99.6 4.1E-09 9E-14 112.8 54.0 415 257-693 21-469 (700)
63 PF13429 TPR_15: Tetratricopep 99.6 1.6E-14 3.5E-19 152.4 13.8 259 599-863 14-274 (280)
64 KOG1156 N-terminal acetyltrans 99.6 4.1E-10 8.8E-15 120.3 46.2 455 501-970 20-510 (700)
65 KOG3785 Uncharacterized conser 99.6 1.6E-10 3.4E-15 113.8 39.8 404 430-860 34-451 (557)
66 COG2956 Predicted N-acetylgluc 99.6 1.6E-11 3.4E-16 119.8 31.4 290 606-901 48-347 (389)
67 COG3071 HemY Uncharacterized e 99.6 2.4E-11 5.3E-16 122.6 33.5 288 676-972 97-391 (400)
68 KOG1174 Anaphase-promoting com 99.5 1.8E-10 3.9E-15 115.9 38.2 296 637-944 205-506 (564)
69 KOG3616 Selective LIM binding 99.5 7.9E-09 1.7E-13 111.0 51.3 380 532-967 715-1130(1636)
70 COG3071 HemY Uncharacterized e 99.5 8.7E-11 1.9E-15 118.7 34.1 291 536-835 97-394 (400)
71 COG2956 Predicted N-acetylgluc 99.5 4.3E-11 9.4E-16 116.7 30.3 288 677-970 49-346 (389)
72 KOG1129 TPR repeat-containing 99.5 4.4E-12 9.5E-17 123.2 20.1 235 701-942 226-462 (478)
73 PRK12370 invasion protein regu 99.4 4.1E-11 8.9E-16 138.4 28.3 247 714-972 277-536 (553)
74 PRK12370 invasion protein regu 99.4 4.5E-11 9.7E-16 138.1 26.7 216 747-970 275-501 (553)
75 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.8E-15 118.9 26.9 126 840-968 102-229 (234)
76 TIGR02521 type_IV_pilW type IV 99.4 1.3E-10 2.9E-15 119.8 25.9 200 732-935 30-231 (234)
77 KOG1174 Anaphase-promoting com 99.4 5.8E-08 1.3E-12 98.2 41.9 398 557-972 96-501 (564)
78 KOG2376 Signal recognition par 99.4 6E-08 1.3E-12 103.0 44.0 181 711-898 320-517 (652)
79 KOG3617 WD40 and TPR repeat-co 99.4 9E-08 2E-12 104.6 44.7 562 311-971 724-1359(1416)
80 KOG1840 Kinesin light chain [C 99.3 7.2E-10 1.6E-14 121.1 28.6 234 700-933 201-476 (508)
81 KOG1129 TPR repeat-containing 99.3 3.2E-10 7E-15 110.5 22.6 229 562-795 227-457 (478)
82 KOG1840 Kinesin light chain [C 99.3 6.7E-10 1.5E-14 121.3 27.8 237 734-970 200-478 (508)
83 KOG3617 WD40 and TPR repeat-co 99.3 3.9E-07 8.4E-12 99.8 47.9 257 201-515 738-994 (1416)
84 KOG2376 Signal recognition par 99.3 1.1E-07 2.4E-12 101.0 42.3 452 285-791 19-515 (652)
85 COG3063 PilF Tfp pilus assembl 99.3 9.8E-10 2.1E-14 102.8 23.9 204 735-944 37-242 (250)
86 KOG0548 Molecular co-chaperone 99.3 3.5E-08 7.5E-13 104.0 36.9 439 460-954 9-471 (539)
87 PF12569 NARP1: NMDA receptor- 99.3 8.5E-09 1.8E-13 114.5 33.5 126 842-970 199-333 (517)
88 KOG0624 dsRNA-activated protei 99.3 3.3E-08 7.2E-13 97.4 32.7 296 598-901 43-370 (504)
89 PRK11189 lipoprotein NlpI; Pro 99.3 2.9E-09 6.2E-14 112.4 27.5 227 712-949 40-277 (296)
90 COG3063 PilF Tfp pilus assembl 99.3 4.1E-09 9E-14 98.7 24.6 211 768-984 36-247 (250)
91 KOG0548 Molecular co-chaperone 99.3 2.7E-08 5.8E-13 104.8 32.9 434 495-981 9-463 (539)
92 PRK11189 lipoprotein NlpI; Pro 99.2 6E-09 1.3E-13 110.0 27.5 218 677-902 40-266 (296)
93 PF12569 NARP1: NMDA receptor- 99.2 3.4E-07 7.4E-12 101.9 41.1 128 562-691 198-333 (517)
94 PF13041 PPR_2: PPR repeat fam 99.2 3.6E-11 7.7E-16 87.8 6.4 49 276-324 1-49 (50)
95 PF13041 PPR_2: PPR repeat fam 99.2 5.4E-11 1.2E-15 86.8 6.4 49 311-359 1-49 (50)
96 KOG0624 dsRNA-activated protei 99.1 1.1E-06 2.3E-11 87.1 35.9 364 530-943 45-427 (504)
97 KOG4340 Uncharacterized conser 99.1 2E-07 4.2E-12 90.3 29.3 317 454-792 11-335 (459)
98 KOG4340 Uncharacterized conser 99.1 6.7E-08 1.4E-12 93.4 25.7 195 526-730 13-210 (459)
99 cd05804 StaR_like StaR_like; a 99.1 3.1E-07 6.7E-12 101.4 34.8 197 629-829 7-213 (355)
100 KOG1125 TPR repeat-containing 99.1 6.5E-09 1.4E-13 110.3 19.7 251 707-964 294-564 (579)
101 KOG1125 TPR repeat-containing 99.1 6.2E-09 1.3E-13 110.4 18.4 219 742-970 294-526 (579)
102 KOG2053 Mitochondrial inherita 99.1 4E-05 8.6E-10 86.2 48.6 132 290-428 21-154 (932)
103 cd05804 StaR_like StaR_like; a 99.1 6.9E-07 1.5E-11 98.5 36.1 95 769-864 116-213 (355)
104 PLN02789 farnesyltranstransfer 99.0 4.2E-07 9E-12 95.5 27.0 230 745-982 49-311 (320)
105 KOG1070 rRNA processing protei 98.9 3.6E-07 7.9E-12 106.1 25.4 248 752-1006 1443-1700(1710)
106 PLN02789 farnesyltranstransfer 98.9 1.4E-06 3.1E-11 91.5 28.0 230 710-948 49-312 (320)
107 PF04733 Coatomer_E: Coatomer 98.9 1.1E-07 2.4E-12 98.5 19.1 157 774-943 109-270 (290)
108 PRK04841 transcriptional regul 98.9 1E-05 2.2E-10 101.6 39.4 375 559-936 342-760 (903)
109 KOG2053 Mitochondrial inherita 98.8 0.00053 1.1E-08 77.6 49.4 223 256-484 22-257 (932)
110 PRK04841 transcriptional regul 98.8 9.9E-06 2.1E-10 101.7 38.4 372 525-902 343-761 (903)
111 COG5010 TadD Flp pilus assembl 98.8 7.2E-07 1.6E-11 86.1 20.8 177 752-934 52-229 (257)
112 KOG1914 mRNA cleavage and poly 98.8 0.00038 8.1E-09 74.1 43.7 186 609-796 309-501 (656)
113 KOG1128 Uncharacterized conser 98.8 1.9E-07 4.2E-12 101.8 18.3 221 728-970 393-615 (777)
114 PF04733 Coatomer_E: Coatomer 98.8 2.8E-07 6E-12 95.6 18.7 82 817-901 182-265 (290)
115 PRK15359 type III secretion sy 98.8 3.4E-07 7.3E-12 84.7 16.1 120 823-951 14-134 (144)
116 KOG1914 mRNA cleavage and poly 98.7 0.00069 1.5E-08 72.2 43.4 185 644-830 309-500 (656)
117 TIGR03302 OM_YfiO outer membra 98.7 3.1E-06 6.8E-11 86.8 22.3 59 877-935 171-231 (235)
118 KOG1070 rRNA processing protei 98.7 8.1E-06 1.8E-10 95.4 27.0 203 697-905 1457-1667(1710)
119 KOG1128 Uncharacterized conser 98.7 1.9E-06 4E-11 94.4 20.4 222 589-830 394-615 (777)
120 PRK10370 formate-dependent nit 98.7 2E-06 4.2E-11 84.3 19.0 117 815-935 52-172 (198)
121 PF12854 PPR_1: PPR repeat 98.7 2.6E-08 5.7E-13 64.8 3.9 32 273-304 2-33 (34)
122 KOG3060 Uncharacterized conser 98.7 1.5E-05 3.3E-10 76.2 23.3 187 712-902 26-221 (289)
123 PRK10370 formate-dependent nit 98.6 3.3E-06 7.1E-11 82.7 18.9 147 809-972 23-174 (198)
124 PF12854 PPR_1: PPR repeat 98.6 4.8E-08 1E-12 63.6 4.0 32 343-374 2-33 (34)
125 TIGR03302 OM_YfiO outer membra 98.6 4.3E-06 9.3E-11 85.8 20.7 183 697-901 32-232 (235)
126 COG4783 Putative Zn-dependent 98.6 4.8E-05 1E-09 80.2 27.0 164 804-989 308-474 (484)
127 PRK14720 transcript cleavage f 98.6 1.1E-05 2.3E-10 94.3 24.7 209 697-946 30-260 (906)
128 PRK15179 Vi polysaccharide bio 98.6 1.8E-05 3.8E-10 92.0 25.8 138 759-901 78-217 (694)
129 PRK15359 type III secretion sy 98.5 3.1E-06 6.6E-11 78.3 15.7 122 788-917 14-136 (144)
130 PRK14720 transcript cleavage f 98.5 2.9E-05 6.4E-10 90.7 26.6 241 623-918 25-268 (906)
131 KOG3060 Uncharacterized conser 98.5 4.2E-05 9.2E-10 73.2 22.2 189 746-940 25-222 (289)
132 COG5010 TadD Flp pilus assembl 98.4 3.3E-05 7.1E-10 74.9 20.1 157 738-897 71-227 (257)
133 KOG0550 Molecular chaperone (D 98.4 6.8E-05 1.5E-09 76.9 22.4 284 602-935 58-349 (486)
134 PRK15179 Vi polysaccharide bio 98.4 6.3E-05 1.4E-09 87.5 25.5 147 694-844 82-229 (694)
135 COG4783 Putative Zn-dependent 98.4 0.00012 2.5E-09 77.4 24.2 149 766-936 305-454 (484)
136 TIGR02552 LcrH_SycD type III s 98.4 8.6E-06 1.9E-10 75.2 14.6 104 838-946 18-122 (135)
137 KOG3081 Vesicle coat complex C 98.4 0.00071 1.5E-08 65.7 26.3 70 852-923 188-257 (299)
138 KOG0553 TPR repeat-containing 98.4 4.4E-06 9.6E-11 82.4 11.8 133 844-981 88-225 (304)
139 KOG3081 Vesicle coat complex C 98.3 0.00066 1.4E-08 65.9 25.9 151 635-795 115-270 (299)
140 TIGR02552 LcrH_SycD type III s 98.3 3.1E-05 6.8E-10 71.4 15.0 107 756-864 6-112 (135)
141 KOG0550 Molecular chaperone (D 98.2 0.00089 1.9E-08 69.0 25.8 90 707-796 258-350 (486)
142 PRK15363 pathogenicity island 98.2 1.8E-05 3.9E-10 71.4 12.4 91 842-935 40-131 (157)
143 COG3898 Uncharacterized membra 98.2 0.0095 2.1E-07 61.1 31.3 293 596-901 85-392 (531)
144 COG3898 Uncharacterized membra 98.2 0.013 2.8E-07 60.2 33.4 281 675-970 96-391 (531)
145 PRK15363 pathogenicity island 98.2 5.7E-05 1.2E-09 68.3 13.7 98 871-971 34-132 (157)
146 PF09976 TPR_21: Tetratricopep 98.1 7.8E-05 1.7E-09 69.4 15.2 117 814-933 23-144 (145)
147 PF09976 TPR_21: Tetratricopep 98.1 0.00011 2.3E-09 68.5 15.5 115 746-862 24-143 (145)
148 KOG1130 Predicted G-alpha GTPa 98.1 5E-05 1.1E-09 77.4 12.8 285 670-970 24-343 (639)
149 PF07079 DUF1347: Protein of u 98.0 0.028 6.1E-07 59.1 44.0 483 163-704 14-531 (549)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00012 2.6E-09 78.6 15.1 123 806-934 173-295 (395)
151 PF07079 DUF1347: Protein of u 98.0 0.034 7.3E-07 58.6 47.3 206 735-948 300-531 (549)
152 PF12895 Apc3: Anaphase-promot 98.0 2.5E-05 5.5E-10 64.6 7.1 80 885-967 2-83 (84)
153 PLN03088 SGT1, suppressor of 97.9 0.00013 2.9E-09 79.0 14.5 103 844-951 9-112 (356)
154 KOG1130 Predicted G-alpha GTPa 97.9 9.3E-05 2E-09 75.5 12.0 287 636-935 25-343 (639)
155 COG4700 Uncharacterized protei 97.9 0.0015 3.3E-08 59.6 18.3 128 833-963 85-214 (251)
156 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00049 1.1E-08 74.0 18.1 121 668-793 174-294 (395)
157 PF12895 Apc3: Anaphase-promot 97.9 2E-05 4.4E-10 65.2 5.7 81 850-932 2-83 (84)
158 PRK10153 DNA-binding transcrip 97.9 0.00046 1E-08 78.0 18.1 148 798-951 333-495 (517)
159 KOG2041 WD40 repeat protein [G 97.9 0.063 1.4E-06 59.3 31.9 379 486-935 690-1085(1189)
160 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00032 6.9E-09 62.9 13.1 102 840-943 5-110 (119)
161 PF13432 TPR_16: Tetratricopep 97.8 5.4E-05 1.2E-09 59.0 6.5 63 878-943 3-65 (65)
162 KOG0553 TPR repeat-containing 97.8 0.00017 3.6E-09 71.5 11.1 100 707-809 90-189 (304)
163 COG4700 Uncharacterized protei 97.8 0.0046 9.9E-08 56.6 18.9 136 798-935 85-221 (251)
164 PRK02603 photosystem I assembl 97.8 0.00075 1.6E-08 65.0 15.3 95 840-935 38-148 (172)
165 TIGR00756 PPR pentatricopeptid 97.8 3.1E-05 6.8E-10 51.4 3.9 33 280-312 2-34 (35)
166 cd00189 TPR Tetratricopeptide 97.8 0.00028 6.1E-09 60.1 11.1 93 840-935 3-96 (100)
167 cd00189 TPR Tetratricopeptide 97.8 0.00032 6.9E-09 59.7 11.4 93 875-970 3-96 (100)
168 PF14559 TPR_19: Tetratricopep 97.8 8.1E-05 1.8E-09 58.7 6.8 65 883-950 2-66 (68)
169 PRK10866 outer membrane biogen 97.8 0.0043 9.4E-08 62.9 20.9 176 740-934 39-239 (243)
170 PLN03088 SGT1, suppressor of 97.8 0.00034 7.4E-09 75.8 13.8 101 877-982 7-108 (356)
171 TIGR00756 PPR pentatricopeptid 97.7 4E-05 8.7E-10 50.9 4.0 31 351-381 3-33 (35)
172 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0008 1.7E-08 60.3 13.9 92 739-830 8-104 (119)
173 PRK10153 DNA-binding transcrip 97.7 0.0014 3E-08 74.2 18.4 135 729-865 333-481 (517)
174 PF13414 TPR_11: TPR repeat; P 97.7 0.00015 3.3E-09 57.3 7.1 63 872-935 3-66 (69)
175 PRK10866 outer membrane biogen 97.7 0.017 3.7E-07 58.6 23.3 176 703-899 37-239 (243)
176 PF12688 TPR_5: Tetratrico pep 97.7 0.002 4.3E-08 56.5 14.1 91 843-934 7-102 (120)
177 COG4235 Cytochrome c biogenesi 97.6 0.0019 4.2E-08 64.8 15.2 99 871-972 155-257 (287)
178 PF13525 YfiO: Outer membrane 97.6 0.011 2.3E-07 58.6 20.4 169 739-927 11-198 (203)
179 CHL00033 ycf3 photosystem I as 97.6 0.00097 2.1E-08 64.0 12.6 92 839-931 37-137 (168)
180 PF14938 SNAP: Soluble NSF att 97.6 0.0062 1.3E-07 63.9 19.5 26 156-181 36-61 (282)
181 PF14938 SNAP: Soluble NSF att 97.6 0.0079 1.7E-07 63.2 20.1 129 840-970 117-265 (282)
182 PF12688 TPR_5: Tetratrico pep 97.6 0.0015 3.2E-08 57.3 12.0 95 874-970 3-103 (120)
183 PF13812 PPR_3: Pentatricopept 97.5 0.00014 3E-09 47.8 4.0 33 279-311 2-34 (34)
184 CHL00033 ycf3 photosystem I as 97.5 0.002 4.2E-08 61.9 13.6 62 769-830 37-100 (168)
185 PF13812 PPR_3: Pentatricopept 97.5 0.00016 3.6E-09 47.4 4.1 30 350-379 3-32 (34)
186 PRK02603 photosystem I assembl 97.4 0.0049 1.1E-07 59.3 15.4 91 699-789 36-128 (172)
187 KOG2041 WD40 repeat protein [G 97.4 0.32 7E-06 54.1 29.5 203 450-689 689-904 (1189)
188 PF01535 PPR: PPR repeat; Int 97.4 0.00017 3.6E-09 46.2 3.3 29 280-308 2-30 (31)
189 PF13414 TPR_11: TPR repeat; P 97.4 0.00077 1.7E-08 53.2 7.5 64 732-795 2-66 (69)
190 PRK15331 chaperone protein Sic 97.4 0.0016 3.5E-08 59.3 10.0 88 880-970 45-133 (165)
191 PF05843 Suf: Suppressor of fo 97.3 0.0036 7.9E-08 65.3 14.0 130 699-830 2-135 (280)
192 PF13432 TPR_16: Tetratricopep 97.3 0.00075 1.6E-08 52.5 6.7 56 740-795 4-59 (65)
193 COG4235 Cytochrome c biogenesi 97.3 0.0092 2E-07 60.0 15.6 110 754-865 143-255 (287)
194 PF13371 TPR_9: Tetratricopept 97.3 0.0011 2.3E-08 53.1 7.6 67 880-949 3-69 (73)
195 PF01535 PPR: PPR repeat; Int 97.3 0.00028 6.2E-09 45.1 3.4 29 315-343 2-30 (31)
196 PF10037 MRP-S27: Mitochondria 97.3 0.0036 7.7E-08 67.7 13.5 121 276-396 64-186 (429)
197 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.33 7.2E-06 51.2 40.0 131 698-830 397-530 (660)
198 PF10037 MRP-S27: Mitochondria 97.3 0.0037 7.9E-08 67.6 13.2 121 310-430 63-185 (429)
199 PF13525 YfiO: Outer membrane 97.2 0.038 8.2E-07 54.7 19.4 169 598-785 10-196 (203)
200 KOG0543 FKBP-type peptidyl-pro 97.2 0.005 1.1E-07 64.2 13.1 95 873-970 258-354 (397)
201 PF14559 TPR_19: Tetratricopep 97.2 0.001 2.3E-08 52.2 6.5 60 744-805 2-61 (68)
202 KOG2796 Uncharacterized conser 97.2 0.26 5.7E-06 48.2 23.4 146 804-952 179-329 (366)
203 PF05843 Suf: Suppressor of fo 97.2 0.0068 1.5E-07 63.3 14.2 129 665-795 3-135 (280)
204 PRK10803 tol-pal system protei 97.2 0.0066 1.4E-07 62.0 13.5 93 847-943 153-251 (263)
205 COG0457 NrfG FOG: TPR repeat [ 97.1 0.37 8.1E-06 49.1 29.6 220 711-935 36-264 (291)
206 KOG1538 Uncharacterized conser 97.1 0.058 1.2E-06 59.1 19.4 23 878-900 779-801 (1081)
207 KOG2796 Uncharacterized conser 97.0 0.36 7.9E-06 47.2 23.3 130 666-795 180-314 (366)
208 PF08579 RPM2: Mitochondrial r 97.0 0.0072 1.6E-07 50.7 9.8 75 319-393 31-114 (120)
209 PF08579 RPM2: Mitochondrial r 97.0 0.012 2.7E-07 49.3 11.2 85 197-290 31-116 (120)
210 KOG1258 mRNA processing protei 97.0 0.84 1.8E-05 50.7 38.5 187 732-921 296-489 (577)
211 COG0457 NrfG FOG: TPR repeat [ 97.0 0.52 1.1E-05 48.0 30.5 221 677-902 37-266 (291)
212 KOG1538 Uncharacterized conser 97.0 0.096 2.1E-06 57.4 20.0 102 191-303 556-657 (1081)
213 PRK10803 tol-pal system protei 97.0 0.0091 2E-07 61.1 12.1 85 746-830 156-245 (263)
214 KOG1585 Protein required for f 96.9 0.41 8.9E-06 46.4 21.5 207 736-967 34-252 (308)
215 PF06239 ECSIT: Evolutionarily 96.9 0.015 3.3E-07 55.4 11.9 86 203-290 64-150 (228)
216 KOG1941 Acetylcholine receptor 96.9 0.26 5.6E-06 50.5 21.0 227 638-864 16-273 (518)
217 COG5107 RNA14 Pre-mRNA 3'-end 96.9 0.83 1.8E-05 48.4 40.5 130 663-795 397-530 (660)
218 PRK15331 chaperone protein Sic 96.8 0.02 4.2E-07 52.4 11.7 86 813-900 48-133 (165)
219 KOG2114 Vacuolar assembly/sort 96.7 0.99 2.1E-05 51.9 26.3 179 281-480 337-517 (933)
220 PF13371 TPR_9: Tetratricopept 96.7 0.0091 2E-07 47.6 8.1 56 741-796 3-58 (73)
221 PF06239 ECSIT: Evolutionarily 96.7 0.034 7.3E-07 53.2 12.6 49 310-358 44-97 (228)
222 PF13281 DUF4071: Domain of un 96.7 0.4 8.6E-06 51.1 21.6 30 906-935 304-333 (374)
223 KOG2610 Uncharacterized conser 96.6 0.068 1.5E-06 53.9 14.8 150 745-897 115-272 (491)
224 COG4105 ComL DNA uptake lipopr 96.6 0.64 1.4E-05 46.1 21.1 63 878-943 173-238 (254)
225 KOG2396 HAT (Half-A-TPR) repea 96.5 1.5 3.4E-05 47.4 36.7 45 958-1004 512-557 (568)
226 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.021 4.6E-07 61.2 11.4 64 836-901 74-141 (453)
227 PF13424 TPR_12: Tetratricopep 96.5 0.0064 1.4E-07 49.3 6.0 62 874-935 7-74 (78)
228 PRK11906 transcriptional regul 96.5 0.14 3.1E-06 55.2 17.2 84 854-942 321-405 (458)
229 COG1729 Uncharacterized protei 96.5 0.039 8.4E-07 54.9 12.0 100 106-220 144-244 (262)
230 PF04184 ST7: ST7 protein; In 96.5 0.35 7.6E-06 52.3 19.6 60 842-901 264-324 (539)
231 KOG1550 Extracellular protein 96.4 2.7 5.9E-05 48.8 28.7 210 748-972 308-539 (552)
232 COG1729 Uncharacterized protei 96.4 0.078 1.7E-06 52.9 13.6 96 735-831 144-244 (262)
233 KOG1941 Acetylcholine receptor 96.4 0.12 2.6E-06 52.8 14.9 48 673-720 16-65 (518)
234 PF13281 DUF4071: Domain of un 96.4 0.47 1E-05 50.5 20.0 172 703-902 146-335 (374)
235 COG4105 ComL DNA uptake lipopr 96.4 0.93 2E-05 45.0 20.5 57 807-864 172-231 (254)
236 PF08631 SPO22: Meiosis protei 96.3 1.7 3.7E-05 45.4 26.8 62 735-796 86-150 (278)
237 KOG4555 TPR repeat-containing 96.3 0.058 1.2E-06 46.4 10.2 92 844-937 50-145 (175)
238 COG3118 Thioredoxin domain-con 96.3 0.44 9.5E-06 48.0 17.9 122 742-865 143-264 (304)
239 KOG0543 FKBP-type peptidyl-pro 96.2 0.068 1.5E-06 56.0 12.8 141 771-935 212-354 (397)
240 PF13424 TPR_12: Tetratricopep 96.2 0.018 4E-07 46.6 7.1 62 839-900 7-74 (78)
241 KOG2610 Uncharacterized conser 96.2 0.46 9.9E-06 48.3 17.4 152 777-932 113-272 (491)
242 PF03704 BTAD: Bacterial trans 96.2 0.2 4.3E-06 46.6 14.8 71 874-945 64-139 (146)
243 COG4785 NlpI Lipoprotein NlpI, 96.1 0.69 1.5E-05 44.0 17.4 30 873-902 238-267 (297)
244 PRK11906 transcriptional regul 96.1 0.27 5.9E-06 53.1 16.8 154 748-932 273-432 (458)
245 KOG2114 Vacuolar assembly/sort 96.1 2 4.4E-05 49.5 24.0 54 772-829 710-763 (933)
246 PF13512 TPR_18: Tetratricopep 96.0 0.099 2.1E-06 46.8 11.1 70 872-944 10-82 (142)
247 PF03704 BTAD: Bacterial trans 96.0 0.17 3.7E-06 47.0 13.4 58 281-339 65-122 (146)
248 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.082 1.8E-06 56.9 11.9 61 735-795 77-140 (453)
249 PF10300 DUF3808: Protein of u 95.8 0.39 8.4E-06 54.3 17.6 117 815-934 246-374 (468)
250 KOG1258 mRNA processing protei 95.8 4.2 9.1E-05 45.4 39.4 188 662-851 296-489 (577)
251 KOG4234 TPR repeat-containing 95.8 0.27 5.8E-06 46.0 12.9 104 844-951 102-210 (271)
252 PF10300 DUF3808: Protein of u 95.8 0.45 9.7E-06 53.8 17.8 161 807-970 193-375 (468)
253 PF13428 TPR_14: Tetratricopep 95.7 0.028 6E-07 39.3 5.2 38 875-913 4-41 (44)
254 KOG4555 TPR repeat-containing 95.6 0.19 4.2E-06 43.3 10.4 91 742-832 52-145 (175)
255 KOG1585 Protein required for f 95.5 2.6 5.7E-05 41.2 20.1 175 279-479 32-216 (308)
256 PF10345 Cohesin_load: Cohesin 95.5 7.4 0.00016 46.1 41.8 196 774-970 368-605 (608)
257 PF13428 TPR_14: Tetratricopep 95.4 0.033 7.1E-07 38.9 4.5 41 908-950 2-42 (44)
258 COG4785 NlpI Lipoprotein NlpI, 95.3 2.8 6.1E-05 40.1 18.4 181 743-935 75-265 (297)
259 KOG0890 Protein kinase of the 95.3 15 0.00032 48.3 30.8 316 563-904 1388-1734(2382)
260 PF13512 TPR_18: Tetratricopep 95.2 0.55 1.2E-05 42.2 12.6 54 743-796 20-76 (142)
261 COG3118 Thioredoxin domain-con 95.2 2.2 4.7E-05 43.3 17.8 145 773-921 140-286 (304)
262 KOG1586 Protein required for f 95.1 3.6 7.7E-05 40.0 22.1 119 851-971 128-259 (288)
263 COG4649 Uncharacterized protei 95.0 1.6 3.4E-05 40.2 14.7 132 812-943 68-203 (221)
264 PF09205 DUF1955: Domain of un 94.8 2.3 5E-05 37.2 14.5 136 167-345 14-152 (161)
265 COG2976 Uncharacterized protei 94.8 1.9 4.2E-05 40.7 15.2 98 880-981 97-198 (207)
266 PF04840 Vps16_C: Vps16, C-ter 94.7 6.9 0.00015 41.5 31.6 103 704-825 183-285 (319)
267 PF13431 TPR_17: Tetratricopep 94.7 0.033 7.2E-07 36.1 2.7 32 756-787 2-33 (34)
268 PF04184 ST7: ST7 protein; In 94.7 3.6 7.7E-05 44.9 19.1 142 780-936 181-324 (539)
269 COG2976 Uncharacterized protei 94.6 1.7 3.7E-05 41.0 14.5 92 843-936 95-188 (207)
270 KOG2280 Vacuolar assembly/sort 94.6 11 0.00024 43.3 35.3 105 632-755 688-792 (829)
271 KOG2471 TPR repeat-containing 94.5 8.5 0.00018 41.7 23.3 72 907-980 619-693 (696)
272 KOG1550 Extracellular protein 94.2 7.1 0.00015 45.4 22.3 128 840-975 291-430 (552)
273 COG4649 Uncharacterized protei 94.2 3.7 8.1E-05 37.8 15.1 124 258-381 73-200 (221)
274 PF04840 Vps16_C: Vps16, C-ter 94.1 9.3 0.0002 40.6 31.3 105 599-723 183-287 (319)
275 PF13431 TPR_17: Tetratricopep 93.9 0.06 1.3E-06 35.0 2.6 31 896-927 3-33 (34)
276 KOG1920 IkappaB kinase complex 93.8 19 0.00042 43.8 24.0 84 768-863 940-1025(1265)
277 PF07719 TPR_2: Tetratricopept 93.7 0.098 2.1E-06 33.9 3.5 32 908-941 2-33 (34)
278 PF02259 FAT: FAT domain; Int 93.6 13 0.00028 40.6 24.1 113 837-951 146-300 (352)
279 PF00515 TPR_1: Tetratricopept 93.6 0.13 2.7E-06 33.4 4.0 32 908-941 2-33 (34)
280 KOG2280 Vacuolar assembly/sort 93.6 17 0.00037 41.8 32.9 106 702-825 688-793 (829)
281 PF12921 ATP13: Mitochondrial 93.5 1.2 2.5E-05 39.8 11.0 97 278-394 2-99 (126)
282 KOG1586 Protein required for f 93.5 8.1 0.00017 37.7 22.4 131 743-902 83-225 (288)
283 KOG4234 TPR repeat-containing 93.4 0.73 1.6E-05 43.3 9.5 88 708-796 105-197 (271)
284 COG0790 FOG: TPR repeat, SEL1 93.3 13 0.00027 39.4 22.9 45 855-902 173-221 (292)
285 PF09205 DUF1955: Domain of un 93.2 5.5 0.00012 35.0 15.7 60 739-798 92-151 (161)
286 PF08631 SPO22: Meiosis protei 93.2 12 0.00027 39.0 26.8 53 709-761 4-64 (278)
287 KOG4648 Uncharacterized conser 93.2 0.38 8.2E-06 48.9 8.1 92 845-941 105-197 (536)
288 smart00299 CLH Clathrin heavy 93.1 4.2 9.2E-05 37.3 14.7 35 745-779 19-53 (140)
289 COG3947 Response regulator con 93.1 7.7 0.00017 39.1 16.5 55 879-934 286-340 (361)
290 PF10345 Cohesin_load: Cohesin 93.0 24 0.00053 41.8 45.5 48 640-687 373-428 (608)
291 PF04053 Coatomer_WDAD: Coatom 93.0 3.2 6.9E-05 46.3 15.8 27 836-862 346-372 (443)
292 COG2909 MalT ATP-dependent tra 92.9 25 0.00053 41.7 28.1 91 672-762 424-526 (894)
293 KOG2066 Vacuolar assembly/sort 92.7 24 0.00052 41.0 28.8 102 320-430 363-467 (846)
294 PF12921 ATP13: Mitochondrial 92.7 1.5 3.2E-05 39.1 10.4 52 308-359 47-99 (126)
295 smart00299 CLH Clathrin heavy 92.5 8 0.00017 35.4 15.8 43 318-361 12-54 (140)
296 KOG2062 26S proteasome regulat 92.5 24 0.00053 40.6 37.0 252 709-970 368-634 (929)
297 PF04053 Coatomer_WDAD: Coatom 92.4 3.1 6.7E-05 46.3 14.8 125 228-373 297-427 (443)
298 KOG1464 COP9 signalosome, subu 92.4 13 0.00027 37.0 18.0 50 641-690 40-92 (440)
299 COG0790 FOG: TPR repeat, SEL1 91.9 19 0.00041 38.0 24.2 155 817-981 92-276 (292)
300 PRK11619 lytic murein transgly 91.8 33 0.00072 40.6 30.4 117 850-969 254-373 (644)
301 KOG4648 Uncharacterized conser 91.4 0.96 2.1E-05 46.1 8.5 86 708-795 107-193 (536)
302 PF10602 RPN7: 26S proteasome 91.4 3.8 8.3E-05 39.2 12.4 63 768-830 37-101 (177)
303 KOG2471 TPR repeat-containing 91.2 20 0.00043 39.1 18.0 138 745-884 218-381 (696)
304 PF13176 TPR_7: Tetratricopept 91.0 0.38 8.1E-06 31.7 3.7 26 909-934 1-26 (36)
305 PF09613 HrpB1_HrpK: Bacterial 91.0 8.9 0.00019 35.4 13.5 51 745-795 22-72 (160)
306 KOG3941 Intermediate in Toll s 90.6 1.8 3.9E-05 43.1 9.2 31 328-358 87-117 (406)
307 PF02259 FAT: FAT domain; Int 90.2 31 0.00068 37.5 25.4 63 768-830 147-212 (352)
308 KOG1920 IkappaB kinase complex 89.9 57 0.0012 40.1 27.6 138 668-826 913-1050(1265)
309 PF13176 TPR_7: Tetratricopept 89.9 0.68 1.5E-05 30.5 4.1 28 874-901 1-28 (36)
310 KOG1464 COP9 signalosome, subu 89.6 24 0.00051 35.2 19.3 203 693-895 21-254 (440)
311 KOG3941 Intermediate in Toll s 89.6 2.7 5.9E-05 41.9 9.5 71 643-713 87-173 (406)
312 COG3629 DnrI DNA-binding trans 89.5 3.3 7.1E-05 42.4 10.6 76 735-810 155-235 (280)
313 PF09613 HrpB1_HrpK: Bacterial 89.4 12 0.00027 34.5 13.1 114 843-963 16-130 (160)
314 PF13181 TPR_8: Tetratricopept 89.3 0.49 1.1E-05 30.5 3.1 27 909-935 3-29 (34)
315 KOG2396 HAT (Half-A-TPR) repea 89.2 39 0.00085 37.2 39.7 67 380-447 102-169 (568)
316 PF06552 TOM20_plant: Plant sp 89.1 3.5 7.6E-05 38.6 9.4 41 818-866 96-136 (186)
317 PF06552 TOM20_plant: Plant sp 88.9 6.2 0.00013 37.0 10.8 77 749-833 51-138 (186)
318 COG2909 MalT ATP-dependent tra 88.8 59 0.0013 38.7 28.7 87 708-794 425-524 (894)
319 PF13170 DUF4003: Protein of u 88.7 25 0.00054 36.9 16.7 128 295-424 79-223 (297)
320 PF10602 RPN7: 26S proteasome 88.4 4.7 0.0001 38.6 10.3 62 839-900 38-101 (177)
321 PF07719 TPR_2: Tetratricopept 88.2 1.3 2.9E-05 28.4 4.7 29 874-902 3-31 (34)
322 PF00515 TPR_1: Tetratricopept 87.9 1.1 2.4E-05 28.9 4.1 28 874-901 3-30 (34)
323 KOG0545 Aryl-hydrocarbon recep 87.3 7.9 0.00017 38.0 10.8 67 874-943 232-298 (329)
324 COG3629 DnrI DNA-binding trans 86.5 6.8 0.00015 40.1 10.6 74 280-354 155-233 (280)
325 PF07035 Mic1: Colon cancer-as 86.4 29 0.00063 32.6 15.3 24 376-399 22-45 (167)
326 PF07035 Mic1: Colon cancer-as 86.4 29 0.00063 32.6 15.5 134 403-550 14-147 (167)
327 KOG3364 Membrane protein invol 86.2 16 0.00035 32.4 11.0 80 869-950 29-112 (149)
328 PF04910 Tcf25: Transcriptiona 86.1 42 0.00091 36.5 17.2 58 118-181 9-66 (360)
329 COG1747 Uncharacterized N-term 85.4 64 0.0014 35.6 25.3 171 592-769 65-241 (711)
330 PF13170 DUF4003: Protein of u 85.4 52 0.0011 34.6 21.0 127 716-844 80-224 (297)
331 KOG4570 Uncharacterized conser 85.3 12 0.00026 38.2 11.3 105 658-764 59-166 (418)
332 TIGR02561 HrpB1_HrpK type III 84.8 30 0.00065 31.5 12.5 50 746-795 23-72 (153)
333 COG5159 RPN6 26S proteasome re 84.5 49 0.0011 33.5 15.4 197 739-935 9-234 (421)
334 PF14853 Fis1_TPR_C: Fis1 C-te 83.8 3.3 7.2E-05 30.1 5.1 41 909-951 3-43 (53)
335 PF04097 Nic96: Nup93/Nic96; 83.7 1E+02 0.0022 36.5 25.7 49 522-571 110-158 (613)
336 PF13174 TPR_6: Tetratricopept 83.6 1.5 3.2E-05 27.9 3.0 25 911-935 4-28 (33)
337 KOG0276 Vesicle coat complex C 83.4 22 0.00048 39.9 13.2 99 813-932 648-746 (794)
338 COG3947 Response regulator con 83.3 57 0.0012 33.3 16.6 57 737-793 283-339 (361)
339 KOG1308 Hsp70-interacting prot 83.1 0.78 1.7E-05 47.1 2.3 124 847-975 124-248 (377)
340 KOG4507 Uncharacterized conser 82.5 8.8 0.00019 42.6 9.8 60 842-902 647-706 (886)
341 TIGR03504 FimV_Cterm FimV C-te 82.4 1.8 3.9E-05 30.0 3.1 23 913-935 5-27 (44)
342 PF09986 DUF2225: Uncharacteri 82.4 23 0.0005 35.1 12.2 63 873-935 119-193 (214)
343 COG4455 ImpE Protein of avirul 82.3 16 0.00034 35.4 10.1 52 882-934 11-62 (273)
344 KOG0376 Serine-threonine phosp 82.2 2.2 4.7E-05 46.2 5.2 95 849-948 16-111 (476)
345 PRK09687 putative lyase; Provi 81.3 73 0.0016 33.2 28.9 219 310-551 34-262 (280)
346 KOG1308 Hsp70-interacting prot 81.1 1.7 3.7E-05 44.7 3.8 119 812-935 124-243 (377)
347 KOG4642 Chaperone-dependent E3 80.9 6.2 0.00013 38.6 7.2 89 844-935 17-106 (284)
348 KOG2066 Vacuolar assembly/sort 80.7 1.3E+02 0.0027 35.5 30.0 45 560-608 394-438 (846)
349 KOG4642 Chaperone-dependent E3 80.6 20 0.00043 35.3 10.3 115 710-826 22-141 (284)
350 PRK15180 Vi polysaccharide bio 80.4 95 0.0021 33.9 32.9 122 393-518 299-421 (831)
351 PF11207 DUF2989: Protein of u 80.2 12 0.00026 36.0 8.8 71 855-926 124-197 (203)
352 PF04190 DUF410: Protein of un 80.2 76 0.0016 32.7 17.3 25 871-895 89-113 (260)
353 PF13374 TPR_10: Tetratricopep 79.9 3.3 7.2E-05 28.0 4.0 28 908-935 3-30 (42)
354 TIGR03504 FimV_Cterm FimV C-te 79.6 4.5 9.9E-05 28.0 4.3 39 947-985 4-42 (44)
355 KOG4570 Uncharacterized conser 79.2 21 0.00045 36.6 10.3 102 343-448 59-165 (418)
356 PF09986 DUF2225: Uncharacteri 78.7 24 0.00052 35.0 10.9 93 884-976 89-199 (214)
357 PF13374 TPR_10: Tetratricopep 78.6 4.8 0.0001 27.2 4.4 29 873-901 3-31 (42)
358 PF13174 TPR_6: Tetratricopept 78.1 3.6 7.7E-05 26.0 3.5 24 772-795 5-28 (33)
359 PF07575 Nucleopor_Nup85: Nup8 77.9 81 0.0017 37.0 16.9 34 953-986 506-539 (566)
360 PF11207 DUF2989: Protein of u 77.6 26 0.00057 33.8 10.2 73 819-892 123-198 (203)
361 PF13181 TPR_8: Tetratricopept 77.6 5.8 0.00013 25.3 4.4 30 873-902 2-31 (34)
362 PF08424 NRDE-2: NRDE-2, neces 76.9 1.1E+02 0.0024 32.8 18.0 99 730-829 16-129 (321)
363 KOG0276 Vesicle coat complex C 76.5 30 0.00064 38.9 11.5 98 290-408 649-746 (794)
364 KOG0376 Serine-threonine phosp 76.2 4.7 0.0001 43.8 5.4 102 707-812 13-115 (476)
365 smart00028 TPR Tetratricopepti 76.1 3.6 7.9E-05 25.3 3.2 27 909-935 3-29 (34)
366 PF08424 NRDE-2: NRDE-2, neces 75.7 1.2E+02 0.0026 32.5 17.7 99 695-794 16-129 (321)
367 PF04097 Nic96: Nup93/Nic96; 75.5 1.8E+02 0.0039 34.5 21.0 42 459-501 117-158 (613)
368 KOG2300 Uncharacterized conser 75.3 1.4E+02 0.003 33.1 38.7 455 494-967 13-552 (629)
369 PF07721 TPR_4: Tetratricopept 75.3 3.4 7.4E-05 24.7 2.5 20 911-930 5-24 (26)
370 KOG3807 Predicted membrane pro 74.0 1.2E+02 0.0025 31.6 18.5 55 807-863 280-337 (556)
371 PF04190 DUF410: Protein of un 74.0 1.1E+02 0.0024 31.4 19.9 165 167-377 2-170 (260)
372 PF14561 TPR_20: Tetratricopep 73.8 37 0.00079 28.1 9.1 64 754-817 9-73 (90)
373 TIGR02508 type_III_yscG type I 73.7 34 0.00074 28.5 8.3 51 287-343 48-98 (115)
374 TIGR02561 HrpB1_HrpK type III 73.2 75 0.0016 29.1 12.0 73 847-922 20-93 (153)
375 COG1747 Uncharacterized N-term 73.2 1.6E+02 0.0034 32.8 25.4 92 666-762 69-160 (711)
376 PF07721 TPR_4: Tetratricopept 72.9 5.7 0.00012 23.7 3.1 23 157-179 3-25 (26)
377 PRK09687 putative lyase; Provi 72.0 1.3E+02 0.0029 31.4 29.3 27 664-691 143-169 (280)
378 PF10579 Rapsyn_N: Rapsyn N-te 71.6 12 0.00026 29.6 5.2 43 745-787 18-63 (80)
379 KOG3364 Membrane protein invol 71.1 64 0.0014 28.8 10.0 82 188-269 29-114 (149)
380 KOG0687 26S proteasome regulat 70.5 1.4E+02 0.0031 31.1 14.8 98 838-935 105-209 (393)
381 KOG4507 Uncharacterized conser 70.0 17 0.00038 40.4 7.9 99 744-844 618-717 (886)
382 TIGR02508 type_III_yscG type I 69.5 43 0.00093 28.0 8.0 61 319-386 45-105 (115)
383 KOG0551 Hsp90 co-chaperone CNS 69.3 30 0.00065 35.9 8.9 96 839-935 83-181 (390)
384 KOG0687 26S proteasome regulat 69.1 1.5E+02 0.0033 30.9 15.3 96 280-375 106-208 (393)
385 PF02284 COX5A: Cytochrome c o 68.8 71 0.0015 27.0 10.1 57 716-772 28-84 (108)
386 PF00244 14-3-3: 14-3-3 protei 68.5 1.4E+02 0.003 30.2 16.3 59 771-829 5-64 (236)
387 PRK10941 hypothetical protein; 68.2 38 0.00083 34.9 9.7 73 876-951 185-257 (269)
388 cd00923 Cyt_c_Oxidase_Va Cytoc 67.7 35 0.00076 28.3 7.2 48 716-763 25-72 (103)
389 PF09670 Cas_Cas02710: CRISPR- 67.1 78 0.0017 34.8 12.5 19 813-831 142-160 (379)
390 KOG0890 Protein kinase of the 66.2 4.8E+02 0.01 35.6 38.7 151 353-511 1388-1541(2382)
391 PF14432 DYW_deaminase: DYW fa 65.1 5.2 0.00011 35.1 2.4 48 963-1010 22-75 (116)
392 COG4455 ImpE Protein of avirul 64.1 43 0.00093 32.6 8.2 58 706-764 9-66 (273)
393 PHA02875 ankyrin repeat protei 64.0 2E+02 0.0043 32.2 15.7 25 529-557 205-229 (413)
394 PHA02875 ankyrin repeat protei 63.1 1.9E+02 0.0042 32.2 15.4 123 269-403 21-152 (413)
395 KOG0551 Hsp90 co-chaperone CNS 63.1 66 0.0014 33.5 9.9 97 803-901 82-182 (390)
396 cd00923 Cyt_c_Oxidase_Va Cytoc 62.9 58 0.0013 27.1 7.6 43 648-690 27-69 (103)
397 PRK12798 chemotaxis protein; R 62.1 2.4E+02 0.0053 30.8 24.1 151 676-830 125-285 (421)
398 PF00637 Clathrin: Region in C 62.0 3.7 8.1E-05 37.8 1.1 53 320-372 14-66 (143)
399 PF07575 Nucleopor_Nup85: Nup8 61.0 3.3E+02 0.0072 32.0 19.7 94 383-480 372-465 (566)
400 KOG0403 Neoplastic transformat 60.7 2.6E+02 0.0056 30.6 27.9 23 282-304 54-76 (645)
401 PF02284 COX5A: Cytochrome c o 60.0 1.1E+02 0.0023 26.0 8.9 39 335-373 32-70 (108)
402 PF13929 mRNA_stabil: mRNA sta 60.0 2.2E+02 0.0047 29.5 15.6 97 153-249 162-261 (292)
403 KOG2063 Vacuolar assembly/sort 59.9 4.1E+02 0.0088 32.6 26.4 28 385-412 506-533 (877)
404 PRK11619 lytic murein transgly 59.1 3.8E+02 0.0082 32.0 42.8 403 497-932 42-464 (644)
405 KOG4279 Serine/threonine prote 58.5 1.3E+02 0.0028 35.1 11.9 47 680-726 180-229 (1226)
406 PF00244 14-3-3: 14-3-3 protei 58.3 1.7E+02 0.0037 29.6 12.2 57 703-759 6-63 (236)
407 PRK10941 hypothetical protein; 57.4 1.2E+02 0.0025 31.4 10.9 60 737-796 185-244 (269)
408 PF00637 Clathrin: Region in C 55.6 4.5 9.7E-05 37.3 0.4 83 284-373 13-95 (143)
409 PF14561 TPR_20: Tetratricopep 55.6 1.2E+02 0.0026 25.1 9.3 30 872-901 22-51 (90)
410 COG4976 Predicted methyltransf 55.5 20 0.00044 34.9 4.7 55 846-902 4-59 (287)
411 KOG0128 RNA-binding protein SA 55.4 4.4E+02 0.0095 31.6 35.7 113 853-966 442-558 (881)
412 KOG2581 26S proteasome regulat 55.3 3.1E+02 0.0066 29.8 16.2 140 801-942 123-280 (493)
413 KOG2063 Vacuolar assembly/sort 55.0 4.9E+02 0.011 32.0 27.6 57 491-551 310-374 (877)
414 COG5159 RPN6 26S proteasome re 54.4 2.6E+02 0.0056 28.6 22.8 94 528-621 130-234 (421)
415 PF04910 Tcf25: Transcriptiona 54.1 3.3E+02 0.0071 29.7 17.8 104 808-917 109-234 (360)
416 smart00028 TPR Tetratricopepti 53.8 24 0.00053 21.1 3.8 10 747-756 15-24 (34)
417 PF10579 Rapsyn_N: Rapsyn N-te 53.2 49 0.0011 26.4 5.6 47 814-860 18-66 (80)
418 KOG2908 26S proteasome regulat 52.8 2.7E+02 0.0059 29.4 12.2 49 276-324 111-167 (380)
419 KOG4279 Serine/threonine prote 52.3 4.6E+02 0.0099 30.9 16.8 59 195-253 164-228 (1226)
420 KOG0545 Aryl-hydrocarbon recep 52.2 2.4E+02 0.0051 28.3 11.1 55 741-795 238-292 (329)
421 KOG2297 Predicted translation 51.9 2.9E+02 0.0064 28.6 19.7 21 593-613 321-341 (412)
422 PF07163 Pex26: Pex26 protein; 50.8 1.8E+02 0.0039 29.8 10.4 86 740-825 90-181 (309)
423 PF14853 Fis1_TPR_C: Fis1 C-te 50.2 75 0.0016 23.2 5.9 22 774-795 8-29 (53)
424 KOG2908 26S proteasome regulat 49.9 2E+02 0.0044 30.2 10.9 52 849-900 87-143 (380)
425 COG5187 RPN7 26S proteasome re 49.3 3.1E+02 0.0068 28.1 12.0 100 836-935 114-220 (412)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 49.2 1.9E+02 0.0042 25.7 12.4 43 890-932 81-124 (126)
427 KOG2062 26S proteasome regulat 48.6 5.3E+02 0.011 30.5 47.7 255 568-830 367-634 (929)
428 PF12862 Apc5: Anaphase-promot 48.1 54 0.0012 27.4 5.8 53 883-935 9-69 (94)
429 COG5187 RPN7 26S proteasome re 48.0 3.3E+02 0.0071 28.0 14.0 67 699-765 116-187 (412)
430 KOG4521 Nuclear pore complex, 47.9 3.7E+02 0.0081 33.5 14.0 26 805-830 986-1011(1480)
431 smart00386 HAT HAT (Half-A-TPR 47.4 46 0.00099 20.5 4.2 26 748-773 2-27 (33)
432 KOG4814 Uncharacterized conser 47.3 1.7E+02 0.0036 33.6 10.5 57 877-934 399-455 (872)
433 PF11846 DUF3366: Domain of un 47.1 60 0.0013 31.7 6.9 35 905-941 142-176 (193)
434 PF07163 Pex26: Pex26 protein; 46.8 1.7E+02 0.0037 30.0 9.6 87 807-895 88-181 (309)
435 PF09670 Cas_Cas02710: CRISPR- 46.6 1.9E+02 0.0042 31.8 11.3 52 778-830 142-197 (379)
436 PRK12798 chemotaxis protein; R 45.6 4.5E+02 0.0097 28.9 24.1 152 711-865 125-285 (421)
437 PF12862 Apc5: Anaphase-promot 45.4 1.1E+02 0.0023 25.6 7.2 25 877-901 46-70 (94)
438 KOG0686 COP9 signalosome, subu 44.6 4.5E+02 0.0098 28.6 14.1 64 156-220 151-216 (466)
439 cd00280 TRFH Telomeric Repeat 44.2 2.1E+02 0.0045 27.3 9.1 72 120-205 86-157 (200)
440 PF09477 Type_III_YscG: Bacter 44.0 2.1E+02 0.0045 24.5 9.1 32 310-343 68-99 (116)
441 PF09477 Type_III_YscG: Bacter 43.4 2.1E+02 0.0046 24.5 8.5 30 799-830 68-97 (116)
442 KOG0292 Vesicle coat complex C 42.4 7E+02 0.015 30.2 19.1 49 164-219 652-700 (1202)
443 PF07720 TPR_3: Tetratricopept 42.3 55 0.0012 21.6 3.8 20 910-929 4-23 (36)
444 PF11846 DUF3366: Domain of un 41.8 84 0.0018 30.6 7.0 56 79-134 120-175 (193)
445 PF10255 Paf67: RNA polymerase 41.7 5.2E+02 0.011 28.5 16.6 60 805-864 125-191 (404)
446 PF14689 SPOB_a: Sensor_kinase 41.6 68 0.0015 24.3 4.8 29 347-375 22-50 (62)
447 KOG3824 Huntingtin interacting 41.5 76 0.0016 32.5 6.4 59 883-944 127-185 (472)
448 PRK15180 Vi polysaccharide bio 41.4 5.3E+02 0.012 28.6 29.9 122 498-623 299-421 (831)
449 KOG2659 LisH motif-containing 38.8 4.1E+02 0.0088 26.5 11.5 101 799-901 23-132 (228)
450 PF14689 SPOB_a: Sensor_kinase 38.8 74 0.0016 24.1 4.6 23 388-410 28-50 (62)
451 KOG2582 COP9 signalosome, subu 37.7 5.4E+02 0.012 27.6 15.3 16 814-829 195-210 (422)
452 COG4941 Predicted RNA polymera 37.2 5.3E+02 0.012 27.3 16.2 130 815-949 269-405 (415)
453 TIGR02710 CRISPR-associated pr 36.8 3.8E+02 0.0081 29.3 11.1 20 324-343 141-160 (380)
454 PF03745 DUF309: Domain of unk 36.8 1.2E+02 0.0027 22.9 5.5 48 288-335 9-61 (62)
455 KOG0530 Protein farnesyltransf 36.0 4.9E+02 0.011 26.6 21.7 118 712-832 57-177 (318)
456 PF07064 RIC1: RIC1; InterPro 35.8 5.1E+02 0.011 26.7 13.7 39 68-112 86-124 (258)
457 KOG2659 LisH motif-containing 35.7 3E+02 0.0065 27.4 9.2 99 833-933 22-129 (228)
458 PF11817 Foie-gras_1: Foie gra 35.0 5E+02 0.011 26.4 15.1 22 160-181 15-36 (247)
459 KOG4077 Cytochrome c oxidase, 34.7 2.3E+02 0.005 25.0 7.3 48 718-765 69-116 (149)
460 cd00280 TRFH Telomeric Repeat 34.5 4E+02 0.0087 25.5 9.3 23 284-306 117-139 (200)
461 PRK13800 putative oxidoreducta 34.0 1.1E+03 0.023 29.8 28.9 249 310-587 632-881 (897)
462 COG2178 Predicted RNA-binding 33.9 4.4E+02 0.0096 25.5 11.2 38 208-254 20-57 (204)
463 COG4259 Uncharacterized protei 33.4 1.9E+02 0.004 24.3 6.2 51 893-945 58-108 (121)
464 smart00777 Mad3_BUB1_I Mad3/BU 32.8 2.5E+02 0.0055 25.0 7.6 38 753-790 83-122 (125)
465 TIGR02710 CRISPR-associated pr 32.4 7E+02 0.015 27.3 12.5 20 812-831 140-159 (380)
466 PF10475 DUF2450: Protein of u 32.3 6.2E+02 0.013 26.6 12.3 24 311-334 195-218 (291)
467 KOG0292 Vesicle coat complex C 31.7 5E+02 0.011 31.4 11.5 54 714-767 1063-1118(1202)
468 cd08819 CARD_MDA5_2 Caspase ac 31.5 3E+02 0.0064 22.7 7.2 35 501-540 49-83 (88)
469 PF11663 Toxin_YhaV: Toxin wit 31.5 47 0.001 29.6 2.8 30 256-287 108-137 (140)
470 KOG4077 Cytochrome c oxidase, 31.3 3.4E+02 0.0074 24.1 7.7 51 211-261 69-119 (149)
471 PF11663 Toxin_YhaV: Toxin wit 30.7 51 0.0011 29.3 2.9 30 570-601 107-136 (140)
472 KOG4521 Nuclear pore complex, 30.5 1.2E+03 0.026 29.5 16.0 177 807-1008 925-1113(1480)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 30.1 4E+02 0.0086 23.8 13.3 43 925-967 81-124 (126)
474 KOG4814 Uncharacterized conser 30.1 3.5E+02 0.0075 31.3 9.6 95 804-902 357-458 (872)
475 cd08308 Death_Tube Death domai 29.8 3.3E+02 0.0071 24.2 7.6 92 38-134 9-110 (125)
476 COG2812 DnaX DNA polymerase II 29.7 6E+02 0.013 29.1 11.8 68 65-134 161-229 (515)
477 PF13929 mRNA_stabil: mRNA sta 29.7 6.6E+02 0.014 26.2 18.5 62 556-617 200-262 (292)
478 cd02679 MIT_spastin MIT: domai 29.7 96 0.0021 24.9 4.1 15 956-970 53-67 (79)
479 cd02680 MIT_calpain7_2 MIT: do 29.7 1.5E+02 0.0033 23.5 5.1 17 919-935 18-34 (75)
480 COG2178 Predicted RNA-binding 29.7 5.3E+02 0.011 25.0 10.6 19 917-935 131-149 (204)
481 COG4976 Predicted methyltransf 29.1 1.1E+02 0.0024 30.1 5.1 58 708-767 5-63 (287)
482 KOG2581 26S proteasome regulat 28.6 8.1E+02 0.017 26.8 20.0 151 53-216 54-234 (493)
483 cd08819 CARD_MDA5_2 Caspase ac 28.2 3.4E+02 0.0074 22.3 7.5 14 642-655 50-63 (88)
484 KOG3024 Uncharacterized conser 28.1 6.9E+02 0.015 25.8 13.0 85 138-242 107-194 (312)
485 PF12968 DUF3856: Domain of Un 28.0 4.2E+02 0.0091 23.3 13.5 64 907-970 55-128 (144)
486 KOG0686 COP9 signalosome, subu 27.9 8.3E+02 0.018 26.7 16.9 62 768-829 151-214 (466)
487 PRK13800 putative oxidoreducta 27.4 1.3E+03 0.029 29.0 29.3 249 380-657 632-881 (897)
488 PF12968 DUF3856: Domain of Un 27.3 4.3E+02 0.0094 23.2 13.0 85 814-898 21-126 (144)
489 PF11817 Foie-gras_1: Foie gra 27.0 2.7E+02 0.0058 28.5 8.0 57 877-933 183-244 (247)
490 KOG0530 Protein farnesyltransf 26.5 7.1E+02 0.015 25.5 19.9 230 745-980 55-305 (318)
491 PHA03100 ankyrin repeat protei 26.1 6.5E+02 0.014 28.7 12.1 234 263-512 48-304 (480)
492 smart00777 Mad3_BUB1_I Mad3/BU 25.4 4.9E+02 0.011 23.2 9.1 43 889-931 80-123 (125)
493 PF10516 SHNi-TPR: SHNi-TPR; 25.3 1.1E+02 0.0025 20.4 3.2 27 909-935 3-29 (38)
494 PRK10564 maltose regulon perip 25.2 1.2E+02 0.0027 31.4 5.0 28 317-344 261-288 (303)
495 PF10366 Vps39_1: Vacuolar sor 25.2 3.9E+02 0.0084 23.1 7.4 26 316-341 42-67 (108)
496 PF10366 Vps39_1: Vacuolar sor 24.8 4.5E+02 0.0099 22.7 9.4 26 281-306 42-67 (108)
497 KOG2297 Predicted translation 24.7 8.2E+02 0.018 25.6 20.3 73 466-543 268-341 (412)
498 PRK10564 maltose regulon perip 24.3 1.6E+02 0.0035 30.6 5.6 31 281-311 260-290 (303)
499 PF11848 DUF3368: Domain of un 23.9 2.7E+02 0.0059 19.7 5.2 30 430-459 14-43 (48)
500 PF15469 Sec5: Exocyst complex 23.4 6.6E+02 0.014 24.0 10.0 57 156-219 58-114 (182)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.2e-87 Score=813.49 Aligned_cols=753 Identities=19% Similarity=0.278 Sum_probs=675.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 001797 154 GGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLI 233 (1012)
Q Consensus 154 ~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 233 (1012)
+...++.++.+|++.|++++|..+|+.| ...|..|+..+|..++.++.+.+..+.+..++..+...++.+++..+|+++
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 3467899999999999999999999999 888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 001797 234 NAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNE 313 (1012)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 313 (1012)
.+|++.|+++.|.++|++|. .||+++||++|.+|++.|++++|.++|++|...|+.||.
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~---------------------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~ 187 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP---------------------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC---------------------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 99999999999999888763 379999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 001797 314 VVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGC 393 (1012)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 393 (1012)
+||+.++.+|++.++++.+.+++..|.+.|+.||..+|++||.+|++.|++++|..+|++|. .||.++||++|.+|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~ 263 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGY 263 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999996 58999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 394 YRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAI 473 (1012)
Q Consensus 394 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 473 (1012)
++.|++++|+++|++|.+.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.
T Consensus 264 ~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 343 (857)
T PLN03077 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343 (857)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 474 NILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCG 553 (1012)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 553 (1012)
++|++|.. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|
T Consensus 344 ~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 344 KVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99999974 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001797 554 IAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSS 633 (1012)
Q Consensus 554 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 633 (1012)
+.|+..+|+.|+++|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+.+|++|.. +..||..||+.
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 999999999999999999999999999999975 4888999999999999999999999999986 58999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 001797 634 LISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGN 713 (1012)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 713 (1012)
++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+++|++.|++++|.++|+++ .||..+|+++|.+|++.|+
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999987 4799999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 001797 714 LTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDM 793 (1012)
Q Consensus 714 ~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 793 (1012)
.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~-------------------------------- 617 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE-------------------------------- 617 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH--------------------------------
Confidence 999999999999999999999999999999888888887777777653
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-H
Q 001797 794 ADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-G 872 (1012)
Q Consensus 794 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 872 (1012)
+.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|...|+.+.+....+++.+ +.|+ .
T Consensus 618 -~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~ 691 (857)
T PLN03077 618 -KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSV 691 (857)
T ss_pred -HhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCc
Confidence 34688999999999999999999999999999884 788999999999999888888888888877775 5663 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH-HHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV-YTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
..|..+.+.|...|+|++|.++.+.|.+.|+.+++.. |..+- |... .| .......|.....+
T Consensus 692 ~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~------~~~~----~f--~~~d~~h~~~~~i~----- 754 (857)
T PLN03077 692 GYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK------GKVH----AF--LTDDESHPQIKEIN----- 754 (857)
T ss_pred chHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC------CEEE----EE--ecCCCCCcchHHHH-----
Confidence 5555666778888888888888888887776544322 21110 0000 00 00000223322222
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcccccccccccHHHHHHhccccc
Q 001797 952 VYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAAAIGIADQ 1011 (1012)
Q Consensus 952 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1012)
+.-.++..+|.+.|++|++....+. +..+++.....|+.++|+||||+.+
T Consensus 755 -------~~l~~l~~~~~~~g~~~~~~~~~~~---~~~~k~~~~~~hse~la~a~~l~~~ 804 (857)
T PLN03077 755 -------TVLEGFYEKMKASGLAGSESSSMDE---IEVSKDDIFCGHSERLAIAFGLINT 804 (857)
T ss_pred -------HHHHHHHHHHHhCCcCCCcchhccc---cHHHHHHHHHhccHHHHHHHhhhcC
Confidence 2234567788999999998765522 4456677888999999999999874
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-84 Score=790.18 Aligned_cols=711 Identities=20% Similarity=0.275 Sum_probs=678.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 001797 274 LVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNA 353 (1012)
Q Consensus 274 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 353 (1012)
..|+..++|.++.+|++.|++++|..+|+.|.+.|++|+..+|..++..+.+.+.++.|..++..+.+.|..++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 001797 354 LIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSD 433 (1012)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 433 (1012)
|+.+|++.|+++.|..+|++|. .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 9999999999999999999997 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 001797 434 LEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVE 513 (1012)
Q Consensus 434 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 513 (1012)
++.+.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.. ||.++||++|.+|++.|+.++|.++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 6899999999999999999999999999
Q ss_pred HHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 001797 514 MTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDL 593 (1012)
Q Consensus 514 m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 593 (1012)
|.+.|+.||..||+.++.++++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 001797 594 KTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGL 673 (1012)
Q Consensus 594 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 673 (1012)
.+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+++.|+++|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 674 CKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 674 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~ 753 (1012)
++.|++++|.++|++|.+ +|.++|+.+|.+|++.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+.+.+.
T Consensus 435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 999999999999999975 5889999999999999999999999999986 59999999999999999999999999
Q ss_pred HHHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 754 SLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV 832 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 832 (1012)
+++..+++.+.... .+++.|+.+|++.|++++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.|
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 99999999998776 89999999999999999999999987 5899999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHH
Q 001797 833 LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMV-ERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYT 911 (1012)
Q Consensus 833 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 911 (1012)
+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..++++|.+.|++++|.+++++|. +.||..+|.
T Consensus 585 ~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~ 661 (857)
T PLN03077 585 VNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWG 661 (857)
T ss_pred CCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHH
Confidence 99999999999999999999999999999999 58999999999999999999999999999999984 468999999
Q ss_pred HHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCccC--------hhHHHH
Q 001797 912 SLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIKFGWVAD--------STVMMD 982 (1012)
Q Consensus 912 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~~~~--------~~~~~~ 982 (1012)
+|+.+|..+|+.+.|+...+++.+ ++|++..++.++.+ |...|+|++|.++.+.|.+.|..++ ...+|.
T Consensus 662 aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 662 ALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE
Confidence 999999999999999999999988 89999999999888 8899999999999999999665554 456689
Q ss_pred hhhhhhcccccccccccH----HHHHHhccccc
Q 001797 983 LVKQDQNDANSENTSNSW----KEAAAIGIADQ 1011 (1012)
Q Consensus 983 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 1011 (1012)
|..+|+.|+..+.++..+ +.+++.|..++
T Consensus 740 f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~ 772 (857)
T PLN03077 740 FLTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772 (857)
T ss_pred EecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC
Confidence 999999999998888644 46677776543
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.1e-69 Score=635.83 Aligned_cols=547 Identities=20% Similarity=0.315 Sum_probs=429.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHH
Q 001797 187 SVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKV-TPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFEL 265 (1012)
Q Consensus 187 ~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~ 265 (1012)
-.++...|..++..|++.|++++|+++|++|...|+ .++..+++.++.+|++.|.+++|..+|+.|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~------------ 433 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR------------ 433 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC------------
Confidence 345677778888888888888888888888888774 4677777788888888887777766665542
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 001797 266 KESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIK 345 (1012)
Q Consensus 266 ~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (1012)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.||.++|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 434 ---------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~ 504 (1060)
T PLN03218 434 ---------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE 504 (1060)
T ss_pred ---------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC
Confidence 27888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHH
Q 001797 346 LNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKK--RNLSPTAYTCNV 423 (1012)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~ 423 (1012)
||.++|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|++
T Consensus 505 PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888875 567788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCC
Q 001797 424 IINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKK 503 (1012)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 503 (1012)
+|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001797 504 MEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRC 583 (1012)
Q Consensus 504 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 583 (1012)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 584 MLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI 663 (1012)
Q Consensus 584 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 663 (1012)
|...|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++..|.+ .+++|..+.+.+..-..
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~---- 818 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS---- 818 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc----
Confidence 888888888888888888888888888888888888888888888888888754432 35555554443332110
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 001797 664 VTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743 (1012)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~ 743 (1012)
.......+..+.|..+|++|.+.|+.||..||+.++.+++..+..+.+..++++|...+..|+..+|+.+++++
T Consensus 819 ------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~ 892 (1060)
T PLN03218 819 ------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF 892 (1060)
T ss_pred ------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh
Confidence 00111122345677777888777777787777777777777777777777777777777777777777777776
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchh
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTS 768 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~ 768 (1012)
.+. .++|..++++|...|..+..
T Consensus 893 ~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 893 GEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred ccC--hHHHHHHHHHHHHcCCCCCc
Confidence 432 35777788887777766553
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-67 Score=625.79 Aligned_cols=548 Identities=20% Similarity=0.329 Sum_probs=467.0
Q ss_pred CCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 001797 309 LNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGI-KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYN 387 (1012)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 387 (1012)
..++...|..++..+++.|++++|+++|++|...|+ .++..+++.++.+|++.|.+++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356777788888888888888888888888888875 46777778888888888888888888888863 8888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001797 388 SLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQN 467 (1012)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 467 (1012)
.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 001797 468 RFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTA--NGLKPNLYTYGAFIREYTKTGNMQAADRY 545 (1012)
Q Consensus 468 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 545 (1012)
++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888888888888888888888888888888888888876 56788888888888888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001797 546 FQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLV 625 (1012)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 625 (1012)
|++|.+.|++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888899999999988888888
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 626 PDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTII 705 (1012)
Q Consensus 626 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 705 (1012)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88889999999999999999999999998888888899999999999999999999999999998888889999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 785 (1012)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|. ++++++.++.+.+..-+.. ......+..++
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g---------~~~~~n~w~~~ 830 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG---------RPQIENKWTSW 830 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc---------ccccccchHHH
Confidence 999999999999999999988889999888888886654 2466666655544432111 11112233467
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 786 ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+..|+..+|++|++++.+. .++|..++++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 99999999999999999999999998889999999999999998888889999999999998432 3689999999999
Q ss_pred cCCCCCHH
Q 001797 866 RGVEPDGV 873 (1012)
Q Consensus 866 ~~~~p~~~ 873 (1012)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 99999864
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.1e-62 Score=578.29 Aligned_cols=555 Identities=19% Similarity=0.344 Sum_probs=467.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN-LSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTT 458 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 458 (1012)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456677777888888888888888888877654 567888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCC
Q 001797 459 LIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGN 538 (1012)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 538 (1012)
|+.+|++.|++++|.++|++|.+ ||.++||.++.+|++.|++++|.++|++|.+.|+.|+..||+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 88888888888888888888864 68888999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 539 MQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSE 618 (1012)
Q Consensus 539 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 618 (1012)
.+.+.+++..+.+.|+.+|..+|++|+++|++.|++++|.++|+.|.. +|..+||.++.+|++.|++++|+++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998864 5899999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001797 619 LQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTV 698 (1012)
Q Consensus 619 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 698 (1012)
|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||..+++.|+++|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999964 699
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 001797 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLC 778 (1012)
Q Consensus 699 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 778 (1012)
.+|+.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~----------------- 454 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE----------------- 454 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999988888888877764
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHH
Q 001797 779 KSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFA 858 (1012)
Q Consensus 779 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 858 (1012)
+.|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..
T Consensus 455 ----------------~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 455 ----------------NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred ----------------hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 2468899999999999999999999999998776 478899999999999999999999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC-HHHHHHHHHHHhccccHHHHHHHHHHHhh-
Q 001797 859 LFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN-QNVYTSLANSLCKEEEFYKVLKLLDEMGD- 935 (1012)
Q Consensus 859 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 935 (1012)
+++++.+ +.| +..+|..++++|.+.|++++|.++++.|.++|+... ...|..+.. . ......
T Consensus 516 ~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~------~-------~~~f~~~ 580 (697)
T PLN03081 516 AAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKK------Q-------DHSFFSG 580 (697)
T ss_pred HHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECC------e-------EEEEccC
Confidence 9888874 666 456888888889999999999999988888885422 222211100 0 000000
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcccccccccccHHHHHHhccccc
Q 001797 936 KEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAAAIGIADQ 1011 (1012)
Q Consensus 936 ~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1011 (1012)
....|..... ++...++.++|.+.|++|++.....-+.. .+.+.....|+.++|+||||+.+
T Consensus 581 d~~h~~~~~i------------~~~l~~l~~~~~~~gy~~~~~~~~~~~~~--~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 581 DRLHPQSREI------------YQKLDELMKEISEYGYVAEENELLPDVDE--DEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCCCccHHHH------------HHHHHHHHHHHHHcCCCCCcchhhccccH--HHHHHHHHhccHHHHHHhhCccC
Confidence 0012221111 24556788899999999998877644433 34567788999999999999864
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-60 Score=568.19 Aligned_cols=473 Identities=20% Similarity=0.279 Sum_probs=424.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 001797 155 GVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLIN 234 (1012)
Q Consensus 155 ~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 234 (1012)
...|+.++..|.+.|++++|+++|..|....++.|+..+|+.++.++.+.++++.+..++..|...|+.||+.+||.+++
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 35789999999999999999999999943345789999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 001797 235 AHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEV 314 (1012)
Q Consensus 235 ~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 314 (1012)
+|++.|++++|.++|++|. .||.++||++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 167 ~y~k~g~~~~A~~lf~~m~---------------------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMP---------------------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHhcCCCHHHHHHHHhcCC---------------------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 9999999999988888763 3799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 001797 315 VYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCY 394 (1012)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 394 (1012)
+|+.++.++++.|+.+.+.+++..+.+.|+.||..+|++||++|++.|++++|.++|++|. .+|+++||+||.+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~ 301 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYA 301 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 395 RENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAIN 474 (1012)
Q Consensus 395 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 474 (1012)
+.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 001797 475 ILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLN-CG 553 (1012)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 553 (1012)
+|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999975 688999999999999999999999999999999999999999999999999999999999999975 57
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001797 554 IAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSS 633 (1012)
Q Consensus 554 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 633 (1012)
+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|++|+.+|...|+++.|..+++++.+.++. +..+|..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~ 533 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVV 533 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHH
Confidence 8888888888888888888888888887765 45677777888888888888888877777777654322 4557777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001797 634 LISGFCKQGFIKEAFQLHEKMCESGIT 660 (1012)
Q Consensus 634 li~~~~~~g~~~~A~~~~~~~~~~~~~ 660 (1012)
++..|++.|++++|.++++.|.+.|+.
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 777777777777777777777777754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.8e-51 Score=517.75 Aligned_cols=848 Identities=14% Similarity=0.090 Sum_probs=684.8
Q ss_pred ccCChhHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHH
Q 001797 79 HVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVF 158 (1012)
Q Consensus 79 ~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1012)
..+++..|+..|+-+.. ..+.++.++..++.++...|++++|...+.+++..+|.+. ...
T Consensus 34 ~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------~~~ 93 (899)
T TIGR02917 34 QKNKYKAAIIQLKNALQ--KDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN------------------QVL 93 (899)
T ss_pred HcCChHhHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChh------------------hhH
Confidence 35789999999987753 2345788899999999999999999999999987666432 345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001797 159 EMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFR 238 (1012)
Q Consensus 159 ~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (1012)
..+.++|...|++++|+.+|... ...........+..+...+.+.|++++|...|+++.+..+. +...+..++..+..
T Consensus 94 ~~~a~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 171 (899)
T TIGR02917 94 PLLARAYLLQGKFQQVLDELPGK-TLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALA 171 (899)
T ss_pred HHHHHHHHHCCCHHHHHHhhccc-ccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHH
Confidence 55677778888888888877665 22223334566667777777888888888888888776543 56677777777888
Q ss_pred cCChHHHHHHHHHHHHh-----------------hcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001797 239 AGNVKAAQRVLFEMEEK-----------------VGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLL 301 (1012)
Q Consensus 239 ~g~~~~A~~~~~~~~~~-----------------~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 301 (1012)
.|++++|..+++++... .|++++|...|++.+...+. +..++..++..+...|++++|...+
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~ 250 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHA 250 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887776543 57777788888877776553 6778888888899999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001797 302 KKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINP 381 (1012)
Q Consensus 302 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (1012)
+.+.+.. +.+...+......+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|+++.+.. +.
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~ 327 (899)
T TIGR02917 251 DALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PN 327 (899)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 9998765 3444555556666778899999999999988765 2234455566677888999999999999988763 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 001797 382 DTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQ 461 (1012)
Q Consensus 382 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 461 (1012)
+...+..+...+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.++|+++.+.. +.+...+..+..
T Consensus 328 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 405 (899)
T TIGR02917 328 SHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGI 405 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56677788888999999999999999998776 5677888889999999999999999999988764 345667888888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHH
Q 001797 462 AHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQA 541 (1012)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 541 (1012)
.+...|++++|.+.++.+.+..+. .......++..+.+.|++++|..+++++.... +++..++..+...+...|++++
T Consensus 406 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 406 SKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHH
Confidence 889999999999999988876543 34556667888889999999999999988753 3466788888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 542 ADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQD 621 (1012)
Q Consensus 542 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 621 (1012)
|...|+++++.. +.+...+..++..+...|++++|.+.++++...+ +.+..++..+...+.+.|+.++|...+.++..
T Consensus 484 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 561 (899)
T TIGR02917 484 AREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE 561 (899)
T ss_pred HHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 5567778888889999999999999999988764 44778888899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 622 KGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTY 701 (1012)
Q Consensus 622 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 701 (1012)
.++ .+...+..++..+...|++++|..+++.+.+.. +.+..+|..++..+...|++++|...|+++.+.. +.+...+
T Consensus 562 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 562 LNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred hCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 653 366778888889999999999999999988753 4567888899999999999999999999988763 3466778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 702 TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 702 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
..+...+.+.|++++|...++++.+. .+.+..++..++..+...|++++|..+++.+.+..|.....+..++..+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 88889999999999999999998875 24456788888999999999999999999999988888888889999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHH
Q 001797 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFD 861 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 861 (1012)
++++|.+.|+++.+. .|+..++..++..+.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 999999999999885 455577788888999999999999999998875 35577788888999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 862 EMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 862 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
++++.. ++++..+..++..+...|+ .+|+.+++++.... |.++..+..++.++...|++++|.+.++++++ ..|+
T Consensus 795 ~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~ 869 (899)
T TIGR02917 795 TVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPE 869 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 998742 3367788889999999999 88999999998875 66788888999999999999999999999988 4565
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHH
Q 001797 942 HATCCI-LISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 942 ~~~~~~-ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
++..+. +...+.+.|++++|.+++++|++
T Consensus 870 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 870 AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 554444 44448899999999999998863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.4e-50 Score=509.64 Aligned_cols=867 Identities=14% Similarity=0.083 Sum_probs=737.6
Q ss_pred HHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHH
Q 001797 87 LGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEMLIDGYR 166 (1012)
Q Consensus 87 l~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 166 (1012)
+-+|-|....+ +...+...+..+...|++++|...+.+.+...|. ++.++..++.+|.
T Consensus 10 ~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------------------~~~~~~~l~~~~~ 67 (899)
T TIGR02917 10 IALALSACGDQ----SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN------------------DAEARFLLGKIYL 67 (899)
T ss_pred HHHHHHhcCCC----CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC------------------CHHHHHHHHHHHH
Confidence 34444554322 6677777888889999999999999998876654 4578889999999
Q ss_pred hcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHH
Q 001797 167 KIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQ 246 (1012)
Q Consensus 167 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (1012)
+.|++++|...|+++ ...+. ++......+..++.+.|++++|...+.+......+.+...+..+...+.+.|++++|.
T Consensus 68 ~~g~~~~A~~~~~~~-~~~~~-~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 145 (899)
T TIGR02917 68 ALGDYAAAEKELRKA-LSLGY-PKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQ 145 (899)
T ss_pred HcCCHHHHHHHHHHH-HHcCC-ChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999 44443 3455666778899999999999999987764445556788899999999999999999
Q ss_pred HHHHHHHHh-----------------hcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001797 247 RVLFEMEEK-----------------VGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKL 309 (1012)
Q Consensus 247 ~~~~~~~~~-----------------~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 309 (1012)
..|+++.+. .|++++|.++++++++..+ ++...+..+...+...|++++|...|++..+..
T Consensus 146 ~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~- 223 (899)
T TIGR02917 146 KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRKAIALR- 223 (899)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-
Confidence 999988654 6899999999999988654 477889999999999999999999999998875
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-hhhHHH
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPD-TQTYNS 388 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 388 (1012)
+.+..++..++..+...|++++|...++.+.+.. +.+...+......+...|++++|...|+++.+.+ |+ ...+..
T Consensus 224 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~ 300 (899)
T TIGR02917 224 PNNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLL 300 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 6678889999999999999999999999998865 3344455555667778999999999999998864 43 344556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 001797 389 LIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNR 468 (1012)
Q Consensus 389 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 468 (1012)
+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+..+.... +.+...+..+...+.+.|+
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCC
Confidence 6677889999999999999999876 5667788889999999999999999999998764 4567889999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 469 FEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQE 548 (1012)
Q Consensus 469 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (1012)
+++|.+.|+++.+..+. +...+..+...+...|++++|.+.++.+.+.... .......++..+.+.|++++|..+++.
T Consensus 379 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 379 FEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999876543 6778888999999999999999999999886533 334556678889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 001797 549 MLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDV 628 (1012)
Q Consensus 549 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 628 (1012)
+.... +++..++..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|.+.|+++....+. +.
T Consensus 457 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 533 (899)
T TIGR02917 457 LEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NL 533 (899)
T ss_pred HHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cH
Confidence 98764 6678899999999999999999999999998764 446778888999999999999999999999987543 77
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001797 629 ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGY 708 (1012)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 708 (1012)
.++..+...+.+.|+.++|..+++++.+.+ +.+...+..++..|.+.|++++|..+++++... .+.+...|..+...+
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 889999999999999999999999998874 446778889999999999999999999999876 355778999999999
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 709 CKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 709 ~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++++++..|.+..++..++..+...|++++|.+
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999998752 44667888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 001797 789 LLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGV 868 (1012)
Q Consensus 789 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 868 (1012)
+++.+.+.+ +++...+..++..+...|++++|...|+++... .|+..++..++.++.+.|++++|.+.++++++. .
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~ 766 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-H 766 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C
Confidence 999998864 557778889999999999999999999999874 466677888999999999999999999999974 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 869 EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 869 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
+.+...+..++..|...|++++|.+.|+++.+.. |+++.++..++.++...|+ .+|++.++++.+ ..|+++..+..
T Consensus 767 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~ 842 (899)
T TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDT 842 (899)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHH
Confidence 3377888899999999999999999999999986 7789999999999999999 889999999988 67888777666
Q ss_pred HHH-HHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcccccccccccHH
Q 001797 949 ISS-VYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWK 1001 (1012)
Q Consensus 949 l~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1012)
++. +...|++++|.++++++++.+-. +...+..+...-...+....+...++
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555 78999999999999999997743 44455555555555555444444333
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.2e-30 Score=318.60 Aligned_cols=646 Identities=12% Similarity=0.048 Sum_probs=441.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------------CcCHHHHH
Q 001797 288 FCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGI---------------KLNLFTYN 352 (1012)
Q Consensus 288 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------------~~~~~~~~ 352 (1012)
.-..++.+.|.+.++++.... +.|..++..++..+...|+.++|.+.+++..+... .|+.....
T Consensus 38 ~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l 116 (1157)
T PRK11447 38 GEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQAL 116 (1157)
T ss_pred HHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHH
Confidence 334555555555555555443 33445555555555555555555555555555431 11222223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 001797 353 ALIGGICKAGEIEKAKGLMTEMLRLGINPDTQT-YNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRC 431 (1012)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 431 (1012)
.+...+.+.|++++|...|+++.+.+ +|+... ...........|+.++|++.++++.+.. +.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHcc
Confidence 44456777788888888888877653 233211 1111111224578888888888888775 55666777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHH
Q 001797 432 SDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDV-FCYNSLISGLCKAKKMEDARSC 510 (1012)
Q Consensus 432 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~ 510 (1012)
|++++|+..++++.... +.. ...+...+..+...+..++. ..+...+..+-.....+.|...
T Consensus 195 g~~~eAl~~l~~~~~~~--~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~ 257 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSP--AGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQ 257 (1157)
T ss_pred CCHHHHHHHHHHHhhCC--Cch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHH
Confidence 88888888888876532 110 01111122222222211111 1222222222222334556666
Q ss_pred HHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 001797 511 LVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGIL 590 (1012)
Q Consensus 511 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 590 (1012)
+..+......|+... ......+...|++++|...|++.++.. +.+..++..+...+.+.|++++|+..|++.++....
T Consensus 258 L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 258 LAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 655544322333221 233556677888888888888888764 456778888888888888888888888888765322
Q ss_pred C-CHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 591 P-DLKTY------------SVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCES 657 (1012)
Q Consensus 591 ~-~~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 657 (1012)
. ....| ......+.+.|++++|+..|++++...+. +...+..+...+...|++++|++.|+++++.
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1 11111 12245677889999999999999887543 6667778888899999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC
Q 001797 658 GITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLT--------PTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV 729 (1012)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 729 (1012)
. +.+...+..+...|. .++.++|..+++.+...... .....+..+...+...|++++|++.+++.++.
T Consensus 415 ~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-- 490 (1157)
T PRK11447 415 D-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-- 490 (1157)
T ss_pred C-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 4 334556667777664 45789998888765432100 01224556677888999999999999999885
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH-----
Q 001797 730 TP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV----- 803 (1012)
Q Consensus 730 ~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----- 803 (1012)
.| +...+..+...|...|++++|...++++++..|.++..+..++..+.+.|++++|+..++.+......++..
T Consensus 491 ~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~ 570 (1157)
T PRK11447 491 DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQR 570 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHH
Confidence 44 455778889999999999999999999999999888888888888889999999999998875432222221
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHH
Q 001797 804 ----TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMM 878 (1012)
Q Consensus 804 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 878 (1012)
.+..++..+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+++++ ..| +...+..+
T Consensus 571 l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~l 643 (1157)
T PRK11447 571 LQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGL 643 (1157)
T ss_pred HhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 233456778899999999999872 345666788899999999999999999999997 455 67888999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH------HHH-HHHHH
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA------TCC-ILISS 951 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~-~ll~~ 951 (1012)
+.+|...|++++|++.++++++.. |.+...+..++.++...|++++|.+.+++++.. .|+.+ ..+ .+...
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ--AKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh--CccCCcchhhHHHHHHHHHH
Confidence 999999999999999999998775 567888999999999999999999999999873 33222 122 22333
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001797 952 VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 952 ~~~~g~~~~A~~~~~~~~~ 970 (1012)
+...|++++|+..|++.+.
T Consensus 721 ~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 6789999999999999975
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.1e-28 Score=308.63 Aligned_cols=662 Identities=11% Similarity=0.038 Sum_probs=306.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001797 157 VFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVP-GLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINA 235 (1012)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 235 (1012)
.+...++.+...++.+.|.+.+.++. . +.| +......+...+.+.|+.++|...++++.+..+. +...+. +-..
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~-~--~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~-~~~~ 104 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLE-L--IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRS-SRTT 104 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHH-c--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHH-HHHH
Confidence 34556666777777777777777662 1 223 3455555666666677777777777776665432 222111 1111
Q ss_pred HHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-
Q 001797 236 HFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEV- 314 (1012)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 314 (1012)
+.. ..|+......+...+.+.|++++|.+.|+++.+.+ +|+..
T Consensus 105 ~~~-----------------------------------~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~l 148 (1157)
T PRK11447 105 MLL-----------------------------------STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDL 148 (1157)
T ss_pred HHh-----------------------------------cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHH
Confidence 110 01122222233333444445555554444444332 22211
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------------
Q 001797 315 VYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLG---------------- 378 (1012)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------- 378 (1012)
....+.......|+.++|+..++++.+.. +.+...+..+...+...|+.++|...++++....
T Consensus 149 a~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~ 227 (1157)
T PRK11447 149 AVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD 227 (1157)
T ss_pred HHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 00000011112344444555554444432 2233344444444444445555555444443321
Q ss_pred --CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 001797 379 --INPD-TQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFV 455 (1012)
Q Consensus 379 --~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 455 (1012)
..++ ...+...+..+-.....+.|...+.++......|+.. .......+...|++++|+..|++.++.. +.+..+
T Consensus 228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a 305 (1157)
T PRK11447 228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEA 305 (1157)
T ss_pred cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 0110 0111111111112222334444444433322122211 1223444555666666666666665542 224455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHH------------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 001797 456 YTTLIQAHLRQNRFEEAINILKGMTGKGVLPD-VFCYN------------SLISGLCKAKKMEDARSCLVEMTANGLKPN 522 (1012)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 522 (1012)
+..|...+.+.|++++|+..|++..+..+... ...|. .+...+.+.|++++|...|+++..... .+
T Consensus 306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~ 384 (1157)
T PRK11447 306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TD 384 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence 55566666666666666666666555432211 11111 112233444555555555554444321 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 523 LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHG 602 (1012)
Q Consensus 523 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 602 (1012)
...+..+...+...|++++|.+.|+++++.. +.+...+..+...|. .++.++|...++.+.... +.. ..
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~--~~~--~~----- 453 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ--RRS--ID----- 453 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH--HHH--HH-----
Confidence 3333444444444555555555555544432 223333333333332 233444444443322110 000 00
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001797 603 LSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERA 682 (1012)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 682 (1012)
.. .. ......+..+...+...|++++|+..+++.++.. +.+...+..+...|.+.|++++|
T Consensus 454 ---------------~~-~~--~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 454 ---------------DI-ER--SLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred ---------------HH-HH--HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 00 00 0011223344445555555555555555555542 11344445555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH---------HHHHHHHHHHhcCCHHHHH
Q 001797 683 RELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF---------VYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 683 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~---------~~~~l~~~~~~~g~~~~A~ 753 (1012)
...++++.... +.+...+..+...+...|+.++|+..++.+......++.. .+..+...+...|+.++|+
T Consensus 515 ~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 55555555431 1123333333333445555555555555544322222111 1223445556666666666
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 833 (1012)
.+++ ..|.++..+..++..+.+.|++++|++.|+++++. -+.+...+..++..+...|++++|++.++++.+. .
T Consensus 594 ~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~ 667 (1157)
T PRK11447 594 ALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-EPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-A 667 (1157)
T ss_pred HHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-C
Confidence 6655 34555556666666677777777777777766664 1234556666666666677777777776666542 1
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 834 KPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGV--EP---DGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 834 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+.+...+..++.++...|++++|.+++++++.... .| +...+..++..+...|++++|+..|++++.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22344555566666667777777777776665211 11 113444556666667777777777766653
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=1.1e-25 Score=266.79 Aligned_cols=655 Identities=12% Similarity=0.069 Sum_probs=438.8
Q ss_pred cChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 001797 257 GAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLK 336 (1012)
Q Consensus 257 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (1012)
|++++|+..|++.++..+. +..++..+...|.+.|++++|+..+++..+.. +.|...+..+ ..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHH
Confidence 4445555555556656655 47788889999999999999999999999864 3344444444 222 8999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHHHHHHH
Q 001797 337 NEMVTFGIKLNLFTYNALIGG--------ICKAGEIEKAKGLMTEMLRLGINPDTQTYNSL-IEGCYRENNMAKAYELLV 407 (1012)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~ 407 (1012)
+++.+.. +-+..++..+... |.+. ++|...++ .......|+..+.... ...|.+.|++++|++++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999874 3345555555554 6555 44555554 3332234445544444 889999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-
Q 001797 408 DMKKRNLSPTAYTCNVIINGLCR-CSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVL- 485 (1012)
Q Consensus 408 ~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~- 485 (1012)
++.+.+ +.+..-...|...|.. .++ +++..+++. .++.+...+..++..|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 999987 5556667778888887 477 888888554 23467888899999999999999999999987654222
Q ss_pred CCHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHCCCCCch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001797 486 PDVFCYNSLISGLCKAKKME-DARSCLVEMTANGLKPNL-YTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTT 563 (1012)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 563 (1012)
|+..+|--+ +.+.+... .|..-|.+ . ..++. .....++..+.+.++++.+.++.. +.|.... .
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~ 345 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--L 345 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--H
Confidence 344443333 33444332 12111211 0 11111 112234677788888886665522 2333222 1
Q ss_pred HHHH-H-HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHH
Q 001797 564 LIDG-H-CKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDK-G-LVPDVITYSSLISGFC 639 (1012)
Q Consensus 564 li~~-~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~li~~~~ 639 (1012)
.+.. + ...+...++...++.|.... +.+......+.-...+.|+.++|..+|...... + ..++.....-++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 2222 2 23366777777777777652 336666666666778889999999999887762 1 2224445557778888
Q ss_pred hcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH---HHHHHHHHhCCCCC--CHHHHHHHHHHHHHc
Q 001797 640 KQGFI---KEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERA---RELFDGIFAKGLTP--TVVTYTTIIDGYCKS 711 (1012)
Q Consensus 640 ~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~p--~~~~~~~li~~~~~~ 711 (1012)
+.+.. .++..+-..+ +...- +.-.|+..++ ...+...... .++ +...|..+..++..
T Consensus 425 ~~~~~~~~~~~~~l~~~~-------~~~~~------~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 425 SHPYLATPAKVAILSKPL-------PLAEQ------RQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred hCCcccchHHHHHhcccc-------ccchh------HHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-
Confidence 87763 3333332211 11111 1112333333 3333333332 133 56677777777766
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLE 791 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 791 (1012)
+++++|+..+.+.... .|+......+...+...|++++|...|+++....+. ...+..++..+.+.|+.++|...++
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~ 566 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQ 566 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7888888888777764 466555444555556889999999999887665444 3456677888888999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-
Q 001797 792 DMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP- 870 (1012)
Q Consensus 792 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 870 (1012)
+.++.. ++....+..+.....+.|++++|...+++..+ ..|+...|..++..+.+.|++++|+..++++++ ..|
T Consensus 567 qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd 641 (987)
T PRK09782 567 QAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPN 641 (987)
T ss_pred HHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 888753 22333333444444566999999999988886 456777888888889999999999999999886 556
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
+...+..++.++...|++++|+..++++++.. |.++.++..++.++...|++++|+..++++++ +.|+......-..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g 718 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTP 718 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhh
Confidence 56677788888899999999999999998886 67788899999999999999999999999987 7788766666555
Q ss_pred H-HHhcCCHHHHHHHHHHHHH
Q 001797 951 S-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 951 ~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
. .....+++.|.+-+++...
T Consensus 719 ~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 5 4556667777777766655
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=2e-25 Score=264.70 Aligned_cols=262 Identities=10% Similarity=-0.024 Sum_probs=128.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 001797 663 IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742 (1012)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~ 742 (1012)
...|..+..++.. ++.++|...|.+.... .|+......+...+...|++++|...++++... +|+...+..+...
T Consensus 477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~a 551 (987)
T PRK09782 477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANT 551 (987)
T ss_pred HHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHH
Confidence 3344444444443 4455555544444443 233322222233334455555555555554332 2333333444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAE 822 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 822 (1012)
+...|++++|...++++++..|.....+..++......|++++|...+++.++ ..|+...+..++.++.+.|++++|+
T Consensus 552 ll~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 552 AQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555555555444443333333333344555555555555554 2344445555555555555555555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
..+++..+. .+.+...+..++..+...|++++|+..++++++ ..| ++..+..++.++...|++++|+..++++++.
T Consensus 630 ~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 630 SDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555555542 122334445555555555555555555555554 333 3444555555555555555555555555555
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 902 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
. |.+..+....+....+..+++.|.+.+.+...
T Consensus 707 ~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 707 I-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred C-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4 33445555555555555555555555555444
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=2.5e-25 Score=244.03 Aligned_cols=698 Identities=13% Similarity=0.089 Sum_probs=511.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCC---HhHHHHHHHHHHhcC-----------ChhHHHHHHHH
Q 001797 277 DCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKL----NPN---EVVYTTLINGFMKQG-----------NLQEAFRLKNE 338 (1012)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~---~~~~~~li~~~~~~g-----------~~~~A~~~~~~ 338 (1012)
-..+|..+...|++.|..++.+.+++.-..... .++ ...++.+...|...+ ....|..+|+.
T Consensus 40 ~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~ 119 (1018)
T KOG2002|consen 40 PLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDL 119 (1018)
T ss_pred chhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhH
Confidence 456799999999999999999999988762110 111 122333333332221 13345555555
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C
Q 001797 339 MVTFGIKLNLFTYNALIGGICKAGE--IEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN--L 414 (1012)
Q Consensus 339 m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~ 414 (1012)
+-......+.. +..-...|...|+ ++.|...|....+.. ++|+..+-.-.......|++..|+.+|....... .
T Consensus 120 A~ki~m~~~~~-l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~ 197 (1018)
T KOG2002|consen 120 ADKIDMYEDSH-LLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPAC 197 (1018)
T ss_pred HHHhhccCcch-hhhhhhhhhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc
Confidence 54332221211 1111123334444 589999999999874 4455555444455567899999999999976554 3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCHHH
Q 001797 415 SPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPN-NFVYTTLIQAHLR---QNRFEEAINILKGMTGKGVLPDVFC 490 (1012)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 490 (1012)
+||+ ...+..++.+.|+.+.|+..|.++++.+ |+ +.++-.|...-.. ...+..++.++...-..... +++.
T Consensus 198 ~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~ 272 (1018)
T KOG2002|consen 198 KADV--RIGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVA 272 (1018)
T ss_pred CCCc--cchhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHH
Confidence 3443 3445577789999999999999999864 43 3333333332222 23456777777766554433 7788
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 001797 491 YNSLISGLCKAKKMEDARSCLVEMTANGLK--PNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGH 568 (1012)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 568 (1012)
.+.|...|.-.|++..+..+...+...... .-...|..+.++|...|+++.|..+|.+..+.....-...+..++..|
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY 352 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH
Confidence 999999999999999999999988875321 123457889999999999999999999998865222255667889999
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001797 569 CKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG----KIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFI 644 (1012)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 644 (1012)
.+.|+++.+...|+.+.+. .+.+..+...|...|...+ ..+.|..++.+..+.. +.|...|..+...+... +.
T Consensus 353 i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~ 429 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DP 429 (1018)
T ss_pred HHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-Ch
Confidence 9999999999999999987 3446777777877777775 5677888888877764 33777887777766554 44
Q ss_pred HHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHHc
Q 001797 645 KEAFQLHEKMC----ESGITPNIVTYNALIDGLCKSGELERARELFDGIFAK---GLTPTV------VTYTTIIDGYCKS 711 (1012)
Q Consensus 645 ~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~ 711 (1012)
..++..|..+. ..+..+.+...|.+...+...|++++|...|++.... ...++. .+-..+...+-..
T Consensus 430 ~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 430 WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 44477766544 4455577889999999999999999999999998865 112222 2233455666778
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLL 790 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 790 (1012)
++.+.|.+.|..+.+. .|..+ .|..++......++..+|...+..+++.+..++.++..++..|.+...+..|.+-|
T Consensus 510 ~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f 587 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKF 587 (1018)
T ss_pred hhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHH
Confidence 8999999999999985 56655 45555533345578999999999999999999999999999999999999999988
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHH------------hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHH
Q 001797 791 EDMADKHI-TPNHVTYTILIDYHC------------KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMF 857 (1012)
Q Consensus 791 ~~~~~~~~-~p~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 857 (1012)
+...+... .+|..+...|++.+. ..+..++|+++|.+.+.. .+-|...-+.++-+++..|++.+|.
T Consensus 588 ~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 588 ETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHH
Confidence 88766432 257777777777654 235678899999998874 3447777888999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhC
Q 001797 858 ALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 858 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 936 (1012)
.+|.++.+.. .....+|.+++.+|...|++..|+++|+.++++-.+ .+..+...|+.++.+.|++.+|.+.+..+..
T Consensus 667 dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~- 744 (1018)
T KOG2002|consen 667 DIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH- 744 (1018)
T ss_pred HHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence 9999998843 335678999999999999999999999999998543 5789999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHH----HH----------------hcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcc
Q 001797 937 EIKLSHATCCILISS----VY----------------EAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQND 990 (1012)
Q Consensus 937 g~~p~~~~~~~ll~~----~~----------------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 990 (1012)
..|.++.....++. ++ ..+..++|.++|..|-+.+-.+-+.+...--.++|.+
T Consensus 745 -~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~r~~~~~~~~~a~~c~~ 817 (1018)
T KOG2002|consen 745 -LAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDKRISKTVIAQEAQLCKD 817 (1018)
T ss_pred -hCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 78988876654433 11 2234678899999999988777777776666666654
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.3e-22 Score=221.08 Aligned_cols=595 Identities=15% Similarity=0.093 Sum_probs=441.5
Q ss_pred hhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 294 LEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTF--GIKLNLFTYNALIGGICKAGEIEKAKGLM 371 (1012)
Q Consensus 294 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (1012)
++.|...|..+.+.. ++|+-.+..-....+..|+|..|+.+|..+... ..+||+.. .+.+++.+.|+.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 589999999999875 667666655555567889999999999997654 34455432 2345666999999999999
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 372 TEMLRLGINPD-TQTYNSLIEGCY---RENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIAC 447 (1012)
Q Consensus 372 ~~m~~~g~~p~-~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 447 (1012)
.+..+. .|+ +.++-.|...-. ....+..+..++...-..+ +.|++..+.|.+.|.-.|++..++.+...+...
T Consensus 223 ~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 223 ERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999986 443 333333322222 2244677888888877766 678899999999999999999999999998875
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhh
Q 001797 448 GLKP--NNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYT 525 (1012)
Q Consensus 448 g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 525 (1012)
...- -...|..+.++|-..|++++|...|-+..+.....-+..+--+.+.|.+.|+++.+...|+...+.. +.+..|
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 4211 1346888999999999999999999888776433224456667889999999999999999998863 225567
Q ss_pred HHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCCHHHHH
Q 001797 526 YGAFIREYTKTG----NMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCML----GRGILPDLKTYS 597 (1012)
Q Consensus 526 ~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~ 597 (1012)
...|...|...+ ..+.|..++...++.- +.|...|..+...+....-+. ++..|..+. ..+..+.+...|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777777777664 5678888888887764 678888988888776655443 366666543 345557788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 001797 598 VLIHGLSRCGKIHEALEVFSELQDK---GLVPDV------ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668 (1012)
Q Consensus 598 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.+...+...|.+.+|...|...... ...+|. .+-..+...+-..++++.|.+.|..+++.. +.-+..|..
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHH
Confidence 9999999999999999999987755 112222 233445666677889999999999999873 323445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHh--
Q 001797 669 LIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNFVYCTLVDGCCR-- 745 (1012)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~~~~~l~~~~~~-- 745 (1012)
++.+....+...+|...++.+.... ..+...+..+...+.+...+..|.+-|+.+.+.- ..+|..+..+|.+.|..
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 5544455678889999999988752 3355566667778888888888888666655431 23677787888886642
Q ss_pred ----------cCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 746 ----------DGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKA 815 (1012)
Q Consensus 746 ----------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 815 (1012)
.+..++|+.+|.++++.+|.+..+-+.++-+++..|++.+|..+|.++.+.. .....+|.+++++|...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHH
Confidence 2356789999999999999999999999999999999999999999998863 34566889999999999
Q ss_pred CCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh---------
Q 001797 816 GTMKDAEHLLVEMQKR-VLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLK--------- 884 (1012)
Q Consensus 816 g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~--------- 884 (1012)
|++..|++.|+...+. ....+..+...|++++...|.+.+|.+.+..+.. ..| +.....+++-...+
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN~a~v~kkla~s~lr~~ 771 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFNLALVLKKLAESILRLE 771 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhHHHHHHHHHHHHHHhcc
Confidence 9999999999987763 3344677888999999999999999999888876 444 33333333322221
Q ss_pred ----------cCChHHHHHHHHHHHHcC
Q 001797 885 ----------EGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 885 ----------~g~~~~A~~~~~~~~~~~ 902 (1012)
.+..+.|.++|..+...+
T Consensus 772 k~t~eev~~a~~~le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 772 KRTLEEVLEAVKELEEARRLFTELSKNG 799 (1018)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 234566777777776665
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1.2e-24 Score=225.86 Aligned_cols=439 Identities=14% Similarity=0.135 Sum_probs=354.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 001797 491 YNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCK 570 (1012)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 570 (1012)
...|..-..+.|++++|++.-...-..+.. +....-.+-.++.+..+++.....-...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 344555566777777777765544333211 22233333445556666666555555555443 4556788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 001797 571 EGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITY-SSLISGFCKQGFIKEAFQ 649 (1012)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~ 649 (1012)
.|++++|+..++.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.... +.+...+-..|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 999999999999888863 336778888999999999999999999888875 4554433 334444556899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC
Q 001797 650 LHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPT-VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG 728 (1012)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~ 728 (1012)
.+.+.++.. +.=.+.|+.|...+..+|+...|+..|++.+.. .|+ ...|-.|...|...+.+++|+..|.+...
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-- 280 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-- 280 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--
Confidence 999998863 223667899999999999999999999999875 444 46788899999999999999999999887
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHH
Q 001797 729 VTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYT 806 (1012)
Q Consensus 729 ~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 806 (1012)
..|+. +.+..+...|...|..+-|+..|+++++..|..+.+|+.|+.++-..|+..+|...|++.+.. .| -..+.+
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~ 358 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMN 358 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHH
Confidence 45654 578888888999999999999999999999999999999999999999999999999999984 44 456889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPN-FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLK 884 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 884 (1012)
.|...|...|.+++|..+|.+..+ +.|. ...++.|...|-.+|++++|+..|++++. +.|+ ...+.+++..|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 999999999999999999999987 4554 45788999999999999999999999995 8886 4789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 885 EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
.|+.+.|+..|.+++..+ |.-..++..|+.+|...|++.+|+..|+.+++ ++|+.+..+-.
T Consensus 435 ~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cN 495 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCN 495 (966)
T ss_pred hhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhH
Confidence 999999999999999986 44578899999999999999999999999998 89988765543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=6.3e-24 Score=220.55 Aligned_cols=449 Identities=17% Similarity=0.186 Sum_probs=331.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcC
Q 001797 458 TLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTG 537 (1012)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 537 (1012)
.|..-..+.|++.+|++.....-..+.. +....-.+-.++.+..+++.....-....+.. +--..+|..+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhc
Confidence 3444445566666666654433332211 11122222333444445554443333333321 123456777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 001797 538 NMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKT-YSVLIHGLSRCGKIHEALEVF 616 (1012)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 616 (1012)
++++|+.+++.+++.. +.....|..+..++...|+.+.|...|...+.. .|+... .+.+...+-..|+..+|...|
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 8888888887777754 445677778888888888888888888777765 344433 333455556678888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 001797 617 SELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN-IVTYNALIDGLCKSGELERARELFDGIFAKGLT 695 (1012)
Q Consensus 617 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 695 (1012)
.+.++..+. =.+.|+.|...+-.+|+...|++.|++.++. .|+ ...|..|...|...+.+++|...|.+.... .
T Consensus 208 lkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 208 LKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 887765322 3466888888888889999999999988875 444 567888889999999999999998888765 3
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHH
Q 001797 696 P-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNAL 773 (1012)
Q Consensus 696 p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 773 (1012)
| ..+.+..+...|..+|.+|-|+..|++.++ ..|+- ..|+.|.+++-..|+..+|...|.+++...|....+.+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4 456677777788899999999999999887 45654 4799999999999999999999999999999888999999
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccC
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHITPN-HVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF-RTYTSLLHGYAGIG 851 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 851 (1012)
+.+|...|++++|..+|....+ +.|. ....+.|...|-++|++++|+..|++.+. +.|+. ..|+.++..|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999887 4554 45788899999999999999999998885 67764 48889999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHH
Q 001797 852 KRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYK 925 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 925 (1012)
+.+.|+..+.+++. +.|. .+...+|+..|-..|+..+|+..|+.+++.. |+-+.+|..++.++.--.+|.+
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHHHhcccc
Confidence 99999999999885 6774 4678889999999999999999999999886 5557788887766554444433
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1e-19 Score=214.09 Aligned_cols=428 Identities=12% Similarity=0.038 Sum_probs=259.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001797 493 SLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEG 572 (1012)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 572 (1012)
.....+.+.|++++|+..|.+.+.. .|+...|..+..+|.+.|++++|+..++..++.. +.+..++..+..+|...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3344455555566665555555543 3444555555666666666666666666666543 334555666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 573 NVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHE 652 (1012)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 652 (1012)
++++|+..|..+...+...+. ....++..+.. ..+........+... ++...+..+.. +...........-+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 666666665544433211111 11111111111 112222222222211 11111121211 111111111111111
Q ss_pred HHHHCCCCCC-hhhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 001797 653 KMCESGITPN-IVTYNALIDG---LCKSGELERARELFDGIFAKG-LTP-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPS 726 (1012)
Q Consensus 653 ~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 726 (1012)
...+. .++ ...+..+... ....+++++|.+.|++.+..+ ..| ....|..+...+...|++++|+..+++.+.
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 111 0111111111 123467888888888888753 122 345677777778888888888888888877
Q ss_pred CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 727 RGVTPD-NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTY 805 (1012)
Q Consensus 727 ~~~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 805 (1012)
. .|+ ...|..+...+...|++++|+..|+++++.+|..+.++..++..+...|++++|...|++.++.. +.+...+
T Consensus 360 l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 L--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred c--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 4 454 44777788888888888888888888888888888888888888888888888888888888742 3345677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HH-------HHH
Q 001797 806 TILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG-VI-------YSM 877 (1012)
Q Consensus 806 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-------~~~ 877 (1012)
..++..+.+.|++++|+..|++.++. .+.+...+..++..+...|++++|++.|+++++ +.|+. .. +..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHH
Confidence 77888888888888888888888764 333566788888888888888888888888886 33321 11 111
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
....+...|++++|.+++++++... |.+..++..++.++...|++++|++.++++.+ +.+.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~--l~~~ 574 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE--LART 574 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--Hhcc
Confidence 1222334688999999998888876 55667788889999999999999999988876 4444
No 18
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.91 E-value=6e-17 Score=170.38 Aligned_cols=617 Identities=13% Similarity=0.088 Sum_probs=313.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 292 KRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLM 371 (1012)
Q Consensus 292 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 371 (1012)
++..+|+.++..+.+.+ +.+...|.+-...--..|++..|..+..+=.+. ++.+...|--- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 46677888888888776 445556655555555667777777666544332 34444444332 2555666677777
Q ss_pred HHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001797 372 TEMLRLGINP-DTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLK 450 (1012)
Q Consensus 372 ~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~ 450 (1012)
...++. .| ++..|-..+.. ..+...=..++++.++.- |.++..|-. .....+.++|.-++.+.++. ++
T Consensus 339 A~Avr~--~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~i-P~sv~LWKa----AVelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRF--LPTSVRLWLKAADL---ESDTKNKKRVLRKALEHI-PRSVRLWKA----AVELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHh--CCCChhhhhhHHhh---hhHHHHHHHHHHHHHHhC-CchHHHHHH----HHhccChHHHHHHHHHHHHh-cc
Confidence 777664 34 33344322221 122333345666666652 444444433 33456666677777777764 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----HHCCCCCchhhH
Q 001797 451 PNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEM----TANGLKPNLYTY 526 (1012)
Q Consensus 451 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~ 526 (1012)
.+...|. +|.+..-++.|..++++..+. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|
T Consensus 408 ~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 3333343 445666677777777777765 3336666666555556677777766666542 334555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 527 GAFIREYTKTGNMQAADRYFQEMLNCGIAPN--DIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLS 604 (1012)
Q Consensus 527 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 604 (1012)
..=...+-..|..-.+..+....+..|+... ..+|+.-.+.|.+.+.++-|..+|...++. .+.+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 5555555555555555555555554443322 234555555555555555555555555543 2223344444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARE 684 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 684 (1012)
..|..++-..+|.+....-+ .....|......+-..|+...|..++....+.. +.+...|..-+........++.|+.
T Consensus 562 ~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 44555555555555554421 133333333444444555555555555555442 2244445444555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001797 685 LFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKG 763 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 763 (1012)
+|.+.... .|+...|.--+...--.++.++|.+++++.++. -|+. ..|..+.+.+-+.++.+.|.+.|..-++..
T Consensus 640 llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 640 LLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 55554442 344444444444444445555555555555442 2232 244445555555555555555555555555
Q ss_pred CCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 001797 764 LASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSL 843 (1012)
Q Consensus 764 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 843 (1012)
|..+..|..|+..-.+.|++-.|..++++..-++ +.+...|...|..-.+.|+.+.|..+..++++. ++.+...|..-
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEa 793 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEA 793 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHH
Confidence 5555555555555555555555555555544331 234445555555555555555555555544443 33333444444
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
+....+.++-......+++ ..-|+.+....+..+....++++|.+.|.++++.+ |....+|..+...+..+|.-
T Consensus 794 I~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCH
Confidence 4443333332222222221 22233344444444555555555555555555554 34445555555555555555
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHH
Q 001797 924 YKVLKLLDEMGDKEIKLSHATCCI 947 (1012)
Q Consensus 924 ~~A~~~~~~~~~~g~~p~~~~~~~ 947 (1012)
++-.+++.+... .+|.....|.
T Consensus 868 ed~kev~~~c~~--~EP~hG~~W~ 889 (913)
T KOG0495|consen 868 EDQKEVLKKCET--AEPTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHhc--cCCCCCcHHH
Confidence 555555555544 4454444433
No 19
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.90 E-value=9.9e-17 Score=168.76 Aligned_cols=610 Identities=13% Similarity=0.078 Sum_probs=482.7
Q ss_pred cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001797 326 QGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYEL 405 (1012)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 405 (1012)
.+|..+|..+++...+.+ +.++..|-+-...--..|++..|+.+..+-.+. ++.+...|-.- ++....+.|..+
T Consensus 264 l~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~v 337 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHH
Confidence 357889999999998876 445666666666666788888888887765554 34455566433 345566778777
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 001797 406 LVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVL 485 (1012)
Q Consensus 406 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (1012)
.-..+... |.++..|.-.++. ..+...-.+++++.++. ++.++..|-.. ......+.|..++.+..+.- +
T Consensus 338 vA~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p 407 (913)
T KOG0495|consen 338 VANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-P 407 (913)
T ss_pred HHHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-c
Confidence 77777663 4444444333221 23444556788888775 34445555443 34566777999999888752 1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHH
Q 001797 486 PDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEML----NCGIAPNDIIY 561 (1012)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~ 561 (1012)
.+. -|.-+|.+..-++.|..++++..+. ++.+...|.+-...--.+|+.+...+++.+.+ ..|+..+...|
T Consensus 408 ~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 133 3455677888899999999998876 56688888887777778899999888887654 56788888889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 562 TTLIDGHCKEGNVKEAFSTFRCMLGRGILPD--LKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFC 639 (1012)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 639 (1012)
..=...+-..|..--+..+....+..|+... -.+|+.-...|.+.+.++-|..+|...++--+ -+...|...+..--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHH
Confidence 8888889899999999999999888776543 35788888999999999999999999887632 36667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001797 640 KQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQ 719 (1012)
Q Consensus 640 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 719 (1012)
..|..+.-..+|+++... ++-....|.....-+...|++..|+.++..+.+.+ +.+...|..-+.......++++|..
T Consensus 562 ~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred hcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHH
Confidence 789999999999999986 45566778788888889999999999999999874 3377889999999999999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC
Q 001797 720 LVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHIT 799 (1012)
Q Consensus 720 l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 799 (1012)
+|.+... ..|...+|..-+......++.++|++++++.++..|.....|..+++++.+.++++.|.+.|..-.+. ++
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP 716 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CP 716 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CC
Confidence 9999887 57788888888888888999999999999999999999999999999999999999999999988764 55
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 001797 800 PNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMV 879 (1012)
Q Consensus 800 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 879 (1012)
..+..|..|...-.+.|.+-.|..++++..-. .+.+...|...++.-.+.|+.++|..+..++++. .+.+...|..-+
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI 794 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAI 794 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHH
Confidence 56778999999999999999999999998765 3457788999999999999999999999999973 344566777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNI 958 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~ 958 (1012)
...-+.++...+...+++. ..|+.+...++..+....++++|.++|.++.+ ..|+....|...-. +...|.-
T Consensus 795 ~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred HhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCH
Confidence 7777777777777666554 35889999999999999999999999999998 67888777655444 6788998
Q ss_pred HHHHHHHHHHHHC
Q 001797 959 DKATRFLESMIKF 971 (1012)
Q Consensus 959 ~~A~~~~~~~~~~ 971 (1012)
++-.+++++-..+
T Consensus 868 ed~kev~~~c~~~ 880 (913)
T KOG0495|consen 868 EDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHhcc
Confidence 8888998887663
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=1.9e-19 Score=211.76 Aligned_cols=430 Identities=11% Similarity=0.047 Sum_probs=314.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 525 TYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLS 604 (1012)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 604 (1012)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456677889999999999999999985 5778899999999999999999999999999874 346778999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARE 684 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 684 (1012)
..|++++|+..|..+...+...+. ....++..+.. ..+........+.. +++...+..+.. |......+.+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 999999999988776654322222 22222222211 23333334443332 223333333333 222211111211
Q ss_pred HHHHHHhCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHhhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 685 LFDGIFAKGLTPTV-VTYTTIIDG---YCKSGNLTEAFQLVNEMPSRG-VTPD-NFVYCTLVDGCCRDGNMEKALSLFLE 758 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~-~~~~~li~~---~~~~g~~~~A~~l~~~~~~~~-~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~ 758 (1012)
-+....+. .+.. ..+..+... ....+++++|.+.|++.+..+ ..|+ ...+..+...+...|++++|+..+++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12211111 1111 111111111 123578999999999998764 2343 34678888888999999999999999
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR 838 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 838 (1012)
+++..|.....|..++.++...|++++|...|+++++.. +.+...|..++..+...|++++|+..|++.++. .+.+..
T Consensus 357 al~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P~~~~ 434 (615)
T TIGR00990 357 SIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DPDFIF 434 (615)
T ss_pred HHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CccCHH
Confidence 999999988999999999999999999999999998852 346788999999999999999999999999874 233566
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH------HH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV------YT 911 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~ 911 (1012)
.+..++..+.+.|++++|+..|+++++ ..| ++..+..++.++...|++++|++.+++++... |.+... +.
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE-KETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CccccccccHHHHH
Confidence 788899999999999999999999987 445 57888899999999999999999999999875 211111 11
Q ss_pred H-HHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCC
Q 001797 912 S-LANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIKFGW 973 (1012)
Q Consensus 912 ~-l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~ 973 (1012)
. .+..+...|++++|++.++++++ +.|++...+..++. +...|++++|++.|++.++..-
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 2 22233446999999999999988 67888776665555 8899999999999999988654
No 21
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=3.7e-17 Score=179.54 Aligned_cols=641 Identities=13% Similarity=0.116 Sum_probs=354.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 001797 286 DGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIE 365 (1012)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 365 (1012)
.-+...|++++|.+++.++++.. +.+...|.+|...|-.+|+.+++...+-.+.-.. +.|..-|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 33444577777777777777764 5566777777777777777777777666555443 445567777777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----HHHHHHHHHhcCCHHHHHHHH
Q 001797 366 KAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYT----CNVIINGLCRCSDLEGACRVF 441 (1012)
Q Consensus 366 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~ 441 (1012)
+|.-.|.++++.. +++...+-.-...|-+.|+...|.+.|.++.+...+.|..- -...++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7777777777763 23433444445566677777777777777777653222221 223345555666667777777
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH----------------------HH----HH
Q 001797 442 EEMIACG-LKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFC----------------------YN----SL 494 (1012)
Q Consensus 442 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------~~----~l 494 (1012)
+.....+ -..+...++.++..|.+...++.|......+......+|..- |. .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl 383 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL 383 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence 7766532 122334666777777777777777776666554211111111 11 12
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCC--CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 001797 495 ISGLCKAKKMEDARSCLVEMTANG--LKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEG 572 (1012)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 572 (1012)
.-++......+....+..-..+.. +.-+...|..+..+|...|++.+|..+|..+.......+...|..+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223334444444444444444444 333455677788888888888888888888887665666778888888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCH
Q 001797 573 NVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDK--------GLVPDVITYSSLISGFCKQGFI 644 (1012)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~ 644 (1012)
.+++|.+.|+.++... +.+...-..|...+.+.|+.++|.+.+..+..- +..|+..........+.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 8888888888887763 335556667777888888888888888875422 2233333444445566777777
Q ss_pred HHHHHHHHHHHHCC-----CCC-----------------ChhhHHHHHHHHHhcCCHHHHHHH------HHHHHhCCCCC
Q 001797 645 KEAFQLHEKMCESG-----ITP-----------------NIVTYNALIDGLCKSGELERAREL------FDGIFAKGLTP 696 (1012)
Q Consensus 645 ~~A~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~------~~~~~~~~~~p 696 (1012)
++-+.+...|+... +-| .......++.+-.+.++.....+- +......|...
T Consensus 543 E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsi 622 (895)
T KOG2076|consen 543 EEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSI 622 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcH
Confidence 76555555554321 001 111112222222332221111111 11111112222
Q ss_pred CH--HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 001797 697 TV--VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV-TPDNF----VYCTLVDGCCRDGNMEKALSLFLEMVQK-----GL 764 (1012)
Q Consensus 697 ~~--~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 764 (1012)
+. ..+.-++..+++.+++++|+.+...+..... .-+.. .-...+.+....+++..|.+.++.++.. .+
T Consensus 623 ddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~ 702 (895)
T KOG2076|consen 623 DDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDV 702 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhh
Confidence 21 1234556677788888888888777664321 11111 1233344556777888888888877776 44
Q ss_pred CchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH-HH
Q 001797 765 ASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYT-SL 843 (1012)
Q Consensus 765 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l 843 (1012)
.....|+...+...+.++-.--..++..+.......++..+......+...+.+..|+..+-++.. ..|+....+ .+
T Consensus 703 ~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 703 YQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHH
Confidence 334555544444444444333333333333321111233333334444566777777776666554 234422222 22
Q ss_pred HHHHHc--c-----C---ChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc--------
Q 001797 844 LHGYAG--I-----G---KRSEMFALFDEMVERG-VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-------- 904 (1012)
Q Consensus 844 ~~~~~~--~-----g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------- 904 (1012)
+-++.. . . ..-+++.++.+-.+.. .....++.++++.+|-..|-..-|..+|++++....+
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 222221 1 1 1223333333333311 1113355666667776677777777777766665200
Q ss_pred ---cCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 905 ---LNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 905 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
-...+-..|.-+|...|+...|.+++.+
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 0123333445555556666555555543
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=8e-17 Score=176.90 Aligned_cols=634 Identities=14% Similarity=0.090 Sum_probs=431.1
Q ss_pred cChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 001797 257 GAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLK 336 (1012)
Q Consensus 257 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (1012)
|+.++|.+++.++++..+. +...|.+|...|-..|+.+++...+-.....+ +.|...|..+.....+.|++++|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 4444445555555555554 67789999999999999999998877766554 567789999999999999999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh-----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 337 NEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQT-----YNSLIEGCYRENNMAKAYELLVDMKK 411 (1012)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 411 (1012)
.++++.. +++...+---...|-+.|+...|...|.++.+... |...- --.++..+...++-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999886 55655555667788899999999999999998742 22221 22345667778888999999998877
Q ss_pred CC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------------------HHHHHHHHHHH
Q 001797 412 RN-LSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPN---------------------------NFVYTTLIQAH 463 (1012)
Q Consensus 412 ~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~---------------------------~~~~~~li~~~ 463 (1012)
.+ -..+...++.++..+.+...++.|......+..+...+| ..+ ..+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 32 134556788999999999999999999888876322222 222 1122233
Q ss_pred HhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHH
Q 001797 464 LRQNRFEEAINILKGMTGKG--VLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQA 541 (1012)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 541 (1012)
......+....+..-+.+.. +.-++..|..+..+|...|++.+|+.+|..+......-+...|..+..+|...|.+++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 33333333333444444444 3335667889999999999999999999999987655567789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 542 ADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR--------GILPDLKTYSVLIHGLSRCGKIHEAL 613 (1012)
Q Consensus 542 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~ 613 (1012)
|.+.|+..+... |.+..+-.+|...+.+.|+.++|.+.++.+..- +..|+..........+.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999875 567788888999999999999999999986532 23445555555667788889888765
Q ss_pred HHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHH------HHHHHCCCCCCh--
Q 001797 614 EVFSELQDKG-----LVP-----------------DVITYSSLISGFCKQGFIKEAFQLH------EKMCESGITPNI-- 663 (1012)
Q Consensus 614 ~~~~~~~~~~-----~~~-----------------~~~~~~~li~~~~~~g~~~~A~~~~------~~~~~~~~~~~~-- 663 (1012)
.....|+... +.| .......++.+-.+.++.....+-. ..-...|...+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 5555544311 111 1112222233333332211111111 111111222221
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhhC-CC--CCC-HH
Q 001797 664 VTYNALIDGLCKSGELERARELFDGIFAKGL-TPTVV----TYTTIIDGYCKSGNLTEAFQLVNEMPSR-GV--TPD-NF 734 (1012)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~--~pd-~~ 734 (1012)
..+..++..+++.+++++|..+...+..... ..+.. .-...+.+.+..+++..|...++.|+.. ++ .|. ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2346678889999999999999998886521 11221 2234556677899999999999999864 11 122 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPN-HVTYTILIDYH 812 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 812 (1012)
.|+...+...+.++-..-...+..+....+.++ ......+..+...+.+..|+..+-++... .|+ +.+-.+++-++
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~--~pd~Pl~nl~lglaf 784 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ--NPDSPLINLCLGLAF 784 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh--CCCCcHHHHHHHHHH
Confidence 455555666666665555666666666666664 55555677778899999999988888763 455 33322333332
Q ss_pred H----------hcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC-------CC---
Q 001797 813 C----------KAGTMKDAEHLLVEMQKRV-LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVE-------PD--- 871 (1012)
Q Consensus 813 ~----------~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------p~--- 871 (1012)
. ++-..-.+..++.+..+.. ......++-.++++|...|-..-|..+|+++++.... ++
T Consensus 785 ih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dL 864 (895)
T KOG2076|consen 785 IHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDL 864 (895)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccH
Confidence 2 2223456667776666532 2224557788999999999999999999999963211 01
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001797 872 -GVIYSMMVDAYLKEGNMMKTIKLVDEM 898 (1012)
Q Consensus 872 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 898 (1012)
...-.+|.-.|..+|+...|.+++++-
T Consensus 865 rkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 865 RKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 134456677899999999999988764
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.1e-19 Score=203.32 Aligned_cols=302 Identities=15% Similarity=0.130 Sum_probs=212.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcC
Q 001797 671 DGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD---NFVYCTLVDGCCRDG 747 (1012)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd---~~~~~~l~~~~~~~g 747 (1012)
..+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666777777777776652 22445666666677777777777777776665422211 134566677777777
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH----VTYTILIDYHCKAGTMKDAEH 823 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~ 823 (1012)
++++|..+|+++.+..+....++..++.++.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 7777777777777766666677777777777777777777777777764322211 234566777778888888888
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 001797 824 LLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL 903 (1012)
Q Consensus 824 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 903 (1012)
.|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++....
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 888887642 234556777888888888888888888888763222123556777888888888888888888888775
Q ss_pred ccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCccChh
Q 001797 904 VLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYE---AGNIDKATRFLESMIKFGWVADST 978 (1012)
Q Consensus 904 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~ 978 (1012)
|+...+..++..+.+.|++++|.++++++.+ ..|+...+..++..+.. .|+.+++..+++++++.++.|+..
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 4555667888888888888888888888877 57888877777766553 558888888888888877666554
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2.3e-19 Score=200.79 Aligned_cols=294 Identities=15% Similarity=0.168 Sum_probs=148.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCH
Q 001797 603 LSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN---IVTYNALIDGLCKSGEL 679 (1012)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 679 (1012)
+...|++++|...|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555555432 1334455555555555555555555555554321111 13345555556666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 001797 680 ERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN----FVYCTLVDGCCRDGNMEKALSL 755 (1012)
Q Consensus 680 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~----~~~~~l~~~~~~~g~~~~A~~~ 755 (1012)
++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..++. ..+..++..+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666543 1234455555666666666666666666665543222111 1233444445555566666666
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 835 (1012)
|+++++..|....++..++..|.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+. .|
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 280 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP 280 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 6665555555445555555555555555555555555554311111234445555555555555555555555542 33
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHcC
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK---EGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~ 902 (1012)
+...+..++..+.+.|++++|..+++++++ ..|+...+..++..+.. .|+.++|+.++++++.++
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 434444555555555555555555555554 24444444444443332 335555555555555443
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.1e-18 Score=200.31 Aligned_cols=421 Identities=13% Similarity=0.036 Sum_probs=306.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 533 YTKTGNMQAADRYFQEMLNCG--IAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610 (1012)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 610 (1012)
+.+..+++.-.-++....+.- -..+..-...++..+.+.|++++|..+++..+.... -+...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHH
Confidence 446667766655555443221 012233445566678889999999999999888643 34556666677778899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 611 EALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690 (1012)
Q Consensus 611 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 690 (1012)
+|...++++....+. +...+..+...+...|++++|+..++++++.. +.+...+..++..+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 999999999887543 66778888888999999999999999998863 3356778888889999999999999999887
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhH
Q 001797 691 AKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSF 770 (1012)
Q Consensus 691 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 770 (1012)
..... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|+..++++++..|.+...+
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~ 249 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALR 249 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence 65322 33334333 34778899999999999887753333444555566778889999999999999999998888888
Q ss_pred HHHHHHHHhcCcHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 001797 771 NALLNGLCKSQKIFE----ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHG 846 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 846 (1012)
..++..|...|++++ |...++++++.. +.+...+..++..+.+.|++++|+..++++.+. .+.+...+..++..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-~P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-HPDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 999999999999886 788999988742 335668888999999999999999999998874 23355677788889
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHH
Q 001797 847 YAGIGKRSEMFALFDEMVERGVEPDG-VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYK 925 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 925 (1012)
+.+.|++++|+..++++.+ ..|+. ..+..++.++...|+.++|+..|+++++.. |+.. ..++++
T Consensus 328 l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~--P~~~-----------~~~~~e 392 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR--ASHL-----------PQSFEE 392 (656)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--hhhc-----------hhhHHH
Confidence 9999999999999999886 45544 334445678889999999999999998885 2221 456678
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChh
Q 001797 926 VLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADST 978 (1012)
Q Consensus 926 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 978 (1012)
|...+.++.+. +.......+|...-....-+.| ....++..++|+..|..
T Consensus 393 a~~~~~~~~~~-~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 442 (656)
T PRK15174 393 GLLALDGQISA-VNLPPERLDWAWEVAGRQSGIE--RDEWERRAKWGYLADNF 442 (656)
T ss_pred HHHHHHHHHHh-cCCccchhhHHHHHhcccccCC--hHHHHHHHHhhHHHHHH
Confidence 88888888764 2222233234433322221222 33466778888776543
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.8e-18 Score=202.30 Aligned_cols=369 Identities=11% Similarity=0.016 Sum_probs=289.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001797 595 TYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLC 674 (1012)
Q Consensus 595 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 674 (1012)
-...++..+.+.|++++|+.++...+...+. +...+..++.+....|++++|...++++.+.. +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445677888999999999999999887555 45556666677778999999999999999874 335777888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 675 KSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 675 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
..|++++|...++++.... +.+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999998862 3356778888999999999999999999887642 2223333333 34778899999999
Q ss_pred HHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 001797 755 LFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKD----AEHLLVEMQ 829 (1012)
Q Consensus 755 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~ 829 (1012)
.++.+++..+.+. ..+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++ |+..|+++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9999988876443 555666788999999999999999998753 4466788889999999999986 799999988
Q ss_pred HCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 001797 830 KRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQN 908 (1012)
Q Consensus 830 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 908 (1012)
+. .+.+...+..++..+...|++++|...++++++ ..| +...+..++.++.+.|++++|+..++++.... |.+..
T Consensus 278 ~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 74 233566888999999999999999999999987 455 45677788899999999999999999999875 44445
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChh-HHHHhhhh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADST-VMMDLVKQ 986 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~~~~~ 986 (1012)
.+..++.++...|++++|++.++++.+ ..|+.. ..++++|...+...+..--.|... .|..=+.+
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~--~~P~~~-----------~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQ--ARASHL-----------PQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hChhhc-----------hhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 566678889999999999999999988 667654 345567777777777755444444 45444444
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.2e-17 Score=199.83 Aligned_cols=407 Identities=11% Similarity=-0.002 Sum_probs=227.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 532 EYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHE 611 (1012)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 611 (1012)
...-.|+.++|++++....... +.+...+..+...+...|++++|...+++.+... +.+...+..++..+...|++++
T Consensus 24 ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 24 IALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3334444444444444444311 2333344444444444555555555554444431 2233344444444445555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 612 ALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 612 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
|+..++++.+..+. +.. +..+...+...|+.++|+..++++++.. +.+...+..++..+...|..++|+..++.+..
T Consensus 102 A~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 55555554443211 233 4444444455555555555555555432 11333333444444444555555554443332
Q ss_pred CCCCCCH------HHHHHHHHHH-----HHcCCH---HHHHHHHHHhhhC-CCCCCHH-HH----HHHHHHHHhcCCHHH
Q 001797 692 KGLTPTV------VTYTTIIDGY-----CKSGNL---TEAFQLVNEMPSR-GVTPDNF-VY----CTLVDGCCRDGNMEK 751 (1012)
Q Consensus 692 ~~~~p~~------~~~~~li~~~-----~~~g~~---~~A~~l~~~~~~~-~~~pd~~-~~----~~l~~~~~~~g~~~~ 751 (1012)
.|+. .....++... ...+++ ++|++.++.+.+. ...|+.. .+ ...+..+...|++++
T Consensus 179 ---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e 255 (765)
T PRK10049 179 ---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD 255 (765)
T ss_pred ---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 1111 0011111111 112223 6677777776643 1122221 11 111233456677888
Q ss_pred HHHHHHHHHHcCCC-chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 752 ALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIFEANKLLEDMADKHITP---NHVTYTILIDYHCKAGTMKDAEHLLVE 827 (1012)
Q Consensus 752 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 827 (1012)
|+..|+++++.++. +..+...++..|...|++++|+..|+++.+..... .......+..++...|++++|..++++
T Consensus 256 A~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~ 335 (765)
T PRK10049 256 VISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAH 335 (765)
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 88888887777654 33344446777888888888888888776532111 123455566667788888888888887
Q ss_pred HHHCC-----------CCCC---hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 001797 828 MQKRV-----------LKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 828 ~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
+.... ..|+ ...+..++..+...|++++|++.++++++ ..| +...+..++.++...|++++|+
T Consensus 336 ~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~ 413 (765)
T PRK10049 336 TINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAE 413 (765)
T ss_pred HhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 77531 0122 12345566777788888888888888876 344 5667778888888888888888
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 893 KLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
+.+++++... |.+...+..++..+...|++++|++.++++++ ..|+++....+-+.
T Consensus 414 ~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 414 NELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 8888888876 66677888888888888888888888888887 67887766555443
No 28
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=8.4e-18 Score=201.25 Aligned_cols=412 Identities=9% Similarity=0.023 Sum_probs=315.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001797 555 APNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSL 634 (1012)
Q Consensus 555 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 634 (1012)
+.+..-..-.+....-.|+.++|++++.+..... +.+...+..+...+...|++++|..++++.++..+. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4455555556667788999999999999998632 456667999999999999999999999999886433 56677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 001797 635 ISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNL 714 (1012)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 714 (1012)
+..+...|++++|+..++++++.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 889999999999999999999873 44566 8889999999999999999999999873 33556667788888899999
Q ss_pred HHHHHHHHHhhhCCCCCCHH------HHHHHHHHHH-----hcCCH---HHHHHHHHHHHHcCCCch---hhH----HHH
Q 001797 715 TEAFQLVNEMPSRGVTPDNF------VYCTLVDGCC-----RDGNM---EKALSLFLEMVQKGLAST---SSF----NAL 773 (1012)
Q Consensus 715 ~~A~~l~~~~~~~~~~pd~~------~~~~l~~~~~-----~~g~~---~~A~~~~~~~~~~~~~~~---~~~----~~l 773 (1012)
++|+..++.+.. .|+.. ....++.... ..+++ ++|++.++.+++..+..+ ..+ ...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999987764 33320 1112222221 12234 788999999987633322 111 111
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHc
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHIT-PNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP---NFRTYTSLLHGYAG 849 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~ 849 (1012)
+..+...|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.+..... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33456779999999999999886532 332 22235778999999999999999987632111 12456667778899
Q ss_pred cCChhHHHHHHHHHHHcC-----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 001797 850 IGKRSEMFALFDEMVERG-----------VEPD---GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLAN 915 (1012)
Q Consensus 850 ~g~~~~A~~~~~~~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 915 (1012)
.|++++|..+++++.+.. ..|+ ...+..++..+...|++++|++.++++.... |.+...+..++.
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 999999999999998632 1123 2345667789999999999999999999886 778999999999
Q ss_pred HHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCccChhHH
Q 001797 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIKFGWVADSTVM 980 (1012)
Q Consensus 916 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 980 (1012)
++...|++++|++.++++++ +.|++......... +...|++++|..+++++++.. |+...+
T Consensus 402 l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~--Pd~~~~ 463 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE--PQDPGV 463 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHH
Confidence 99999999999999999998 78998776665555 778999999999999999843 555443
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=1.5e-16 Score=185.68 Aligned_cols=438 Identities=11% Similarity=0.041 Sum_probs=232.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001797 497 GLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKE 576 (1012)
Q Consensus 497 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 576 (1012)
...+.|+++.|+..|.+..+..+.-....+ .++..+...|+.++|...+++.... .+........++..|...|++++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 456788888888888888775332111233 6777777778888888888887721 12333444444567777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 577 AFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCE 656 (1012)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 656 (1012)
|+++|+++++.. +.++..+..++..+...++.++|++.+.++... .|+...+..++..+...++..+|+..++++.+
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 888888887764 334666667777778888888888888887765 34444444444344445566568888888877
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcC------------CHHHHHHHHH
Q 001797 657 SGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYT--TIIDGYCKSG------------NLTEAFQLVN 722 (1012)
Q Consensus 657 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~li~~~~~~g------------~~~~A~~l~~ 722 (1012)
.. +.+...+..+...+.+.|-...|.++..+-..- +.+...-+- ..+.-..+.+ -.+.|+.-++
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 63 335666677777777778777777665543321 111111110 0000111111 1233344444
Q ss_pred HhhhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 723 EMPSR-GVTPD-NF----VYCTLVDGCCRDGNMEKALSLFLEMVQKGL-ASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 723 ~~~~~-~~~pd-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.+... +-.|. .. +..-.+-++...|++.++++.|+.+...+. -|+.+...++++|...++.++|..+++++..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 43321 11121 11 111223334455555555555555555442 2445555555555555555555555555543
Q ss_pred CCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCCh--H-HHHHHHHHHHccCChhHH
Q 001797 796 KHI-----TPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL-----------KPNF--R-TYTSLLHGYAGIGKRSEM 856 (1012)
Q Consensus 796 ~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~--~-~~~~l~~~~~~~g~~~~A 856 (1012)
... +++......|..++...+++++|..+++++.+... .|++ . .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 211 11222234455555555555555555555554200 0111 1 122334444555555555
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 857 FALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 857 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.+.+++++. ..| |......++..+...|.+.+|.+.++.+.... |.+..+...++.++...|++.+|.++.+.+.+
T Consensus 436 e~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 436 QKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 555555543 233 44555555555555555555555555544443 44455555555555555555555555555554
Q ss_pred CCCCCCHHHHH
Q 001797 936 KEIKLSHATCC 946 (1012)
Q Consensus 936 ~g~~p~~~~~~ 946 (1012)
..|+++...
T Consensus 513 --~~Pe~~~~~ 521 (822)
T PRK14574 513 --RSPEDIPSQ 521 (822)
T ss_pred --hCCCchhHH
Confidence 445554333
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.3e-15 Score=177.79 Aligned_cols=447 Identities=13% Similarity=0.081 Sum_probs=265.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCH
Q 001797 427 GLCRCSDLEGACRVFEEMIACGLKPNN--FVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKM 504 (1012)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 504 (1012)
...+.|+++.|+..|++.++.. |+. .++ .++..+...|+.++|+..+++..... .........++..+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCH
Confidence 3345666666666666665542 332 122 55555555566666666666555211 11122222223445555666
Q ss_pred HHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001797 505 EDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCM 584 (1012)
Q Consensus 505 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 584 (1012)
++|.++|+++.+..+. +...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 6666666665554332 2334444455555555555665555555543 233333333333333334444455555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 001797 585 LGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIV 664 (1012)
Q Consensus 585 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 664 (1012)
.+.. +.+...+..++..+.+.|-...|.++..+-. +.++-...... +.+.|.+..+. +..+...
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~~~ 259 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRM----AVLPTRS 259 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhh----ccccccc
Confidence 5542 2244445555555555555555554443321 11110000000 00111111111 1000000
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 001797 665 TYNALIDGLCKSGELERARELFDGIFAK-GLTPTV-VTY----TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCT 738 (1012)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~----~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~ 738 (1012)
- -. +---.+.|..-++.+... +..|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-..
T Consensus 260 ~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 E----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred c----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0 00 001245566666666653 112321 222 2344567789999999999999998876534457788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC----ch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-----------CCC
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLA----ST--SSFNALLNGLCKSQKIFEANKLLEDMADKHI-----------TPN 801 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~ 801 (1012)
+.++|...+.+++|..+|+.+....++ +. .....|.-+|...+++++|..+++++.+... .|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 999999999999999999999876532 22 3357788999999999999999999987311 122
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHH
Q 001797 802 H---VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSM 877 (1012)
Q Consensus 802 ~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 877 (1012)
+ ..+..++..+...|++.+|++.++++... -+-|......+...+...|++.+|...++.+.. +.| +..+...
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~ 489 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERA 489 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHH
Confidence 2 13445677788999999999999999875 345888999999999999999999999977764 577 4567778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQ 907 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 907 (1012)
.+..+...|++.+|..+.+.+.+.. |.+.
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~-Pe~~ 518 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRS-PEDI 518 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhC-CCch
Confidence 8899999999999999999999985 5444
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1e-15 Score=153.96 Aligned_cols=479 Identities=14% Similarity=0.101 Sum_probs=299.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHH
Q 001797 386 YNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTC-NVIINGLCRCSDLEGACRVFEEMIACGLKPN----NFVYTTLI 460 (1012)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~----~~~~~~li 460 (1012)
...|..-|..+..+.+|+..++-+++....||.... ..+.+.+.+.+.+.+|+++++..+..-...+ ....+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 344556677778889999999999988877776443 3567788899999999999998887532222 23455555
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhH--------HHHHHH
Q 001797 461 QAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTY--------GAFIRE 532 (1012)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~l~~~ 532 (1012)
-.+++.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.+|+.-...||..-| ..|+.-
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 6688999999999999988775 467776666666777789999999999999876544443322 122222
Q ss_pred HHhcCCH--------HHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 533 YTKTGNM--------QAADRYFQEMLN---CGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIH 601 (1012)
Q Consensus 533 ~~~~g~~--------~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 601 (1012)
..+...+ ..|.+..-...+ --+.|+-. .| .+-.++.++.-.......+. -..-..
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~~la~dl--ei~ka~ 427 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHAELAIDL--EINKAG 427 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhhhhhhhh--hhhHHH
Confidence 2221111 111111111111 00111100 00 01111111111100000000 011233
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hhc-CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 001797 602 GLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGF-CKQ-GFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGEL 679 (1012)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 679 (1012)
.|.+.|+++.|+++++-+.+++-..-...-+.|-..+ .+. .++.+|.+.-+..+... .-+....+.-.+.-...|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 5678888888888888777654332222223332222 222 36777777766665432 22333333333444557888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 680 ERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEM 759 (1012)
Q Consensus 680 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~ 759 (1012)
++|.+.|++.+.....-....|+ +.-.+-..|++++|++.|-++..- +..+..++..+.+.|....+..+|++++.++
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 88888888888652221122222 222456788888888888776543 2335567777788888888888888888888
Q ss_pred HHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 001797 760 VQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRT 839 (1012)
Q Consensus 760 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 839 (1012)
...-|.++.++..|+..|-+.|+-..|.+.+-.-... ++-+..+...|...|....-+++|+.+|++..- +.|+...
T Consensus 585 ~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 8888888888888888888888888888776655443 455677777777788888888888888887653 6788888
Q ss_pred HHHHHHHH-HccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 001797 840 YTSLLHGY-AGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGN 887 (1012)
Q Consensus 840 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 887 (1012)
|..++..| .+.|+++.|.++|+..... ++.|......|+..+...|-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88666444 5678888888888887763 45577777777776666553
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.9e-14 Score=145.02 Aligned_cols=448 Identities=15% Similarity=0.125 Sum_probs=284.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 001797 493 SLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYG-AFIREYTKTGNMQAADRYFQEMLNCGIAPN----DIIYTTLIDG 567 (1012)
Q Consensus 493 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~ 567 (1012)
.|.+.|..+....+|+..|+-+.+...-|+.-... .+...+.+..++..|+++++..+++-...+ ..+.+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 34455555556666666666666655555543322 344555666666667666666665422222 1233334445
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------------CCHHHHHHHH
Q 001797 568 HCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLV------------PDVITYSSLI 635 (1012)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~li 635 (1012)
+.+.|++++|+..|+...+. .|+..+-..|+-++...|+-++..+.|.+|+..... |+....+..+
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai 363 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI 363 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence 56666777777777666554 456555555555555566666666666666543222 2222222222
Q ss_pred HH-----HHhcC--CHHHHHHHHHHHHHCCCCCChhh---------------------HHHHHHHHHhcCCHHHHHHHHH
Q 001797 636 SG-----FCKQG--FIKEAFQLHEKMCESGITPNIVT---------------------YNALIDGLCKSGELERARELFD 687 (1012)
Q Consensus 636 ~~-----~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---------------------~~~l~~~~~~~g~~~~A~~~~~ 687 (1012)
.. ..+.+ +-++++-.--+++.--+.|+-.. -..-..-|.+.|+++.|+++++
T Consensus 364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilk 443 (840)
T KOG2003|consen 364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILK 443 (840)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHH
Confidence 11 11111 12222222222222112222100 0112335778999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHH-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001797 688 GIFAKGLTPTVVTYTTIIDG-YCK-SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLA 765 (1012)
Q Consensus 688 ~~~~~~~~p~~~~~~~li~~-~~~-~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 765 (1012)
-..++..+.....-+.|-.. |.+ ..++..|.++.+..+... .-+......-.+.-...|++++|.+.|++++..+..
T Consensus 444 v~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas 522 (840)
T KOG2003|consen 444 VFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS 522 (840)
T ss_pred HHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH
Confidence 87766332222222222222 222 346777877777766431 223333333344455789999999999999998877
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 001797 766 STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLH 845 (1012)
Q Consensus 766 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 845 (1012)
...++..++-.+...|++++|+++|-++..- +..+......+...|.-..+...|++++.+.... ++.|+.++..|..
T Consensus 523 c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d 600 (840)
T KOG2003|consen 523 CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD 600 (840)
T ss_pred HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence 7788888899999999999999999887653 3346667778888898899999999999877654 5558889999999
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHH-HHHhccccH
Q 001797 846 GYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLA-NSLCKEEEF 923 (1012)
Q Consensus 846 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~ 923 (1012)
.|-+.|+-.+|...+-+--. .-| +.++...|+.-|....-+++|+.+++++.-. .|+..-|..++ .++.+.|++
T Consensus 601 lydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred Hhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHhcccH
Confidence 99999999999987766543 444 7788888888899999999999999998765 47888887765 566788999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 924 YKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 924 ~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
++|.++|+....+ .|.+-.|.-.+-.
T Consensus 677 qka~d~yk~~hrk--fpedldclkflvr 702 (840)
T KOG2003|consen 677 QKAFDLYKDIHRK--FPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 9999999999873 5655555444333
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=1.6e-13 Score=150.20 Aligned_cols=572 Identities=14% Similarity=0.074 Sum_probs=280.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTL 459 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 459 (1012)
.|+..+|..++..-...|+.+.|..++.+|.++|++.+..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 478888888888888888888888888888888888777766666544 77888888888888888888888888776
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH-----HHHHHHHHHHCCCCCchhhHHHHHHHHH
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMED-----ARSCLVEMTANGLKPNLYTYGAFIREYT 534 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-----A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 534 (1012)
+..+..+|....+.+....-. ......+..+..+.....+++. ....+.+..-.|+......|. +..-..
T Consensus 278 vip~l~N~~t~~~~e~sq~~h----g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~ 352 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAH----GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLR 352 (1088)
T ss_pred HHhhhcchhhhhcccccchhh----hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHH
Confidence 666666554222222111000 0012222333322111111111 111112211123322222222 222233
Q ss_pred hcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 001797 535 KTGNMQAADRYFQEMLNCG---IAPNDIIYTTLIDGHCKEGNVKEAFSTFR--CMLGRGILPDLKTYSVLIHGLSRCGKI 609 (1012)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~li~~~~~~g~~ 609 (1012)
.+|.-++..++-..+..-- -+.++..|..++.-|.+.-+.--...++. +.+.. ..+...--.++....+. +.
T Consensus 353 hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rk 429 (1088)
T KOG4318|consen 353 HQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RK 429 (1088)
T ss_pred HcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-Cc
Confidence 3566666666666664311 12234445555544443321111111111 11110 00000000111111111 11
Q ss_pred HHHHHHHHHHHh----CCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 001797 610 HEALEVFSELQD----KGLVP-------DVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE 678 (1012)
Q Consensus 610 ~~A~~~~~~~~~----~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 678 (1012)
..++.-+..+.. ....| -...-+.++..++..-+..++...-++....- -+ ..|..|++.++....
T Consensus 430 ns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdk 506 (1088)
T KOG4318|consen 430 NSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDK 506 (1088)
T ss_pred chHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHH
Confidence 111111111110 00111 11123445555665555555554433332221 11 457888888888888
Q ss_pred HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 001797 679 LERARELFDGIFAK--GLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD--NFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 679 ~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd--~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
.+.|..+.+++... .+..|..-+..+.+.+.+.+....+..++.++.+.-...+ ..++..+++.....|+.+.-.+
T Consensus 507 le~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkk 586 (1088)
T KOG4318|consen 507 LEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKK 586 (1088)
T ss_pred HHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHH
Confidence 99998888888654 2233455677888888888999999999988876422222 2355566677777888888777
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---------------------HH
Q 001797 755 LFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDY---------------------HC 813 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---------------------~~ 813 (1012)
+++-+...+...+ .-+.....+.++...|.+.++..... ..|.+.....+... |.
T Consensus 587 l~d~lvslgl~et---gPl~~vhLrkdd~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~ 662 (1088)
T KOG4318|consen 587 LADILVSLGLSET---GPLWMVHLRKDDQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFE 662 (1088)
T ss_pred HHHHHHHhhhhhc---ccceEEEeeccchhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHH
Confidence 7776665544331 22333445566666666666554432 33333322222222 22
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIK 893 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 893 (1012)
+.|++.+|.++.+.= |+. +-+.- ..|...|...-.....+.+.+ ......|+..|.+.|+++.|..
T Consensus 663 k~g~~~~a~di~etp---G~r----~r~~R-Dr~~de~e~~~lEll~elt~~------lg~~dRLL~sy~~~g~~erA~g 728 (1088)
T KOG4318|consen 663 KLGSCVDAGDITETP---GVR----CRNGR-DRDTDEGEIVPLELLLELTHE------LGKNDRLLQSYLEEGRIERASG 728 (1088)
T ss_pred hcccccchhhccccC---ccc----ccCCC-ccccccCccccHHHHHHHHhH------hHHHHHHHHHHHhhhHHHHHHh
Confidence 333333332222100 000 00000 111111222211122222211 1223346677778888888888
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhcccc---HHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 001797 894 LVDEMFLRGLVLNQNVYTSLANSLCKEEE---FYKVLKLLDEMGDK-EIKLSHATCCILISSVYEAGNI-DKATRFLESM 968 (1012)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-g~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~ 968 (1012)
+|.++. +.|+......|+.++.++.. ..++....+++-+. ...|....++.-...+..+++. +.|.+.|++.
T Consensus 729 lwnK~Q---V~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~ 805 (1088)
T KOG4318|consen 729 LWNKDQ---VSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERL 805 (1088)
T ss_pred HHhhCc---CCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHH
Confidence 887776 34566777777777665543 33444444444331 1222222222222234444444 4677777777
Q ss_pred HHCCCccChhHHHHhhhh
Q 001797 969 IKFGWVADSTVMMDLVKQ 986 (1012)
Q Consensus 969 ~~~g~~~~~~~~~~~~~~ 986 (1012)
.+.-.+-+-..+..|++.
T Consensus 806 eeq~~v~tad~ls~f~k~ 823 (1088)
T KOG4318|consen 806 EEQLTVSTADELSDFLKC 823 (1088)
T ss_pred HHccCCCcHHHHHHHHHH
Confidence 776444444444444443
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.8e-12 Score=132.02 Aligned_cols=462 Identities=13% Similarity=0.115 Sum_probs=273.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001797 358 ICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGA 437 (1012)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 437 (1012)
--..+++..|+.+|++.+..+ ..+...|-..+..-.++..+..|..++++.+..-+..| ..|.-.+.+--..|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHHH
Confidence 334566666666666666543 34555666666666666666666666666665421111 2233333344445666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 001797 438 CRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTAN 517 (1012)
Q Consensus 438 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 517 (1012)
.++|++-.+. .|+...|.+.|+.-.+-+.++.|..++++.+-. .|++.+|-.....-.+.|....|..+|+..++.
T Consensus 161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6666666553 566666666666666666666666666665543 356666665555555666666666666555442
Q ss_pred CC--CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 001797 518 GL--KPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN--DIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDL 593 (1012)
Q Consensus 518 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 593 (1012)
-- ..+...+.+....-..+..++.|.-+|+-.++.= |.+ ...|..+...--+-|+..
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~------------------ 297 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKE------------------ 297 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchh------------------
Confidence 00 0011122222222233344444444444444431 111 112222211111112111
Q ss_pred HHHHHHHHHHHhcCCHHHHH-----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhH
Q 001797 594 KTYSVLIHGLSRCGKIHEAL-----EVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI--VTY 666 (1012)
Q Consensus 594 ~~~~~li~~~~~~g~~~~A~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~ 666 (1012)
-+++++ --++.++..++ .|-.+|-..+..-...|+.+...++|++++.. ++|-. ..|
T Consensus 298 --------------gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W 361 (677)
T KOG1915|consen 298 --------------GIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYW 361 (677)
T ss_pred --------------hhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHH
Confidence 122221 12334444432 36667777777777778888888888888765 34421 111
Q ss_pred HHHH-----HHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q 001797 667 NALI-----DGL---CKSGELERARELFDGIFAKGLTPTVVTYTTI----IDGYCKSGNLTEAFQLVNEMPSRGVTPDNF 734 (1012)
Q Consensus 667 ~~l~-----~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~l~~~~~~~~~~pd~~ 734 (1012)
.-.| .++ ....+++.+.++|+..++. ++....|+.-+ .....++.++..|.+++...+. ..|-..
T Consensus 362 ~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~K 438 (677)
T KOG1915|consen 362 RRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDK 438 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchh
Confidence 1111 111 2457788888888888874 34444554433 3344577888888888888774 577888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHIT-PNHVTYTILIDYHC 813 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~ 813 (1012)
++...|..-.+.++++....+|++.++-+|.+-.+|...+..-...|+++.|..+|+-.++.... -....|...|+.-.
T Consensus 439 lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 439 LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh
Confidence 88888888888889999999999999988888888888888888889999999999888765321 13446777777778
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-----ccC-----------ChhHHHHHHHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYA-----GIG-----------KRSEMFALFDEMVE 865 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 865 (1012)
..|.++.|..+++++++. .+...+|.+.+..-. ..| +...|..+|+++..
T Consensus 519 ~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 889999999999998874 344446666554322 223 45566777776654
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.8e-14 Score=146.74 Aligned_cols=508 Identities=14% Similarity=0.064 Sum_probs=331.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 001797 417 TAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLIS 496 (1012)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 496 (1012)
+..-+..+++-+..+.++.-|.-+-++....+. |+..-.-+.++++-.|+++.|..++..-.-. ..|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 344455666666666677777777777665543 3333444666777777777777766543221 136666666777
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001797 497 GLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKE 576 (1012)
Q Consensus 497 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 576 (1012)
++.+..+++.|..++..-. +..+...|..--. ...-..+.+. ++. ++......+-.-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHH
Confidence 7777777777776665220 0001111100000 0000000000 000 001111111112234555667788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 001797 577 AFSTFRCMLGRGILPDLKTYSVLIHGLSRC-GKIHEALEVFSELQDK-GLVPDVITYSSLISGF-CKQGFIKEAFQLHEK 653 (1012)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 653 (1012)
|...|.+.+.. |+..+..+...-... -..++-..+|..+.-. ....++.....+.... ++..+ ++....-++
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n-~~~~~r~~~ 234 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRN-EESLTRNED 234 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcc-ccccccCch
Confidence 88888877665 444444433221111 0111222222211000 0011222222222221 11111 111111110
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH
Q 001797 654 MCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN 733 (1012)
Q Consensus 654 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~ 733 (1012)
..-.+...+........+-+...+++.+..++++.+.+. .++....+..-|..+...|+-.+-..+-.++++. .+...
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a 312 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKA 312 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCC
Confidence 111123445666677778888999999999999999987 3445556666677888999998888888888875 45566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 734 FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHC 813 (1012)
Q Consensus 734 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 813 (1012)
.+|.+++--|...|+..+|++.|.+....++.-..+|..++..|.-.|.-+.|...+....+. ++....-+.-+.--|.
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYM 391 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHH
Confidence 789999998889999999999999999999998899999999999999999999999888663 2323333444555688
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHH--cCCCC----CHHHHHHHHHHHHhcC
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVE--RGVEP----DGVIYSMMVDAYLKEG 886 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p----~~~~~~~l~~~~~~~g 886 (1012)
+.++.+-|.++|.++.. +.| |+..++-++-.....+.+.+|..+|+..++ ....+ ...++++|+.+|.+.+
T Consensus 392 ~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 89999999999999885 445 788888888888889999999999999884 11111 3467889999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 001797 887 NMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV 952 (1012)
Q Consensus 887 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 952 (1012)
++++|+..+++.+... |.+..++..++-+|...|+++.|++.|.+++. +.|++.....+++..
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999999999996 77999999999999999999999999999997 899998888888764
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=3.2e-13 Score=135.75 Aligned_cols=357 Identities=19% Similarity=0.230 Sum_probs=214.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 001797 277 DCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIG 356 (1012)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (1012)
...||.+||.|+|+--..+.|.+++++........+..+||.+|.+-. +-...++..+|....+.||..|+|+++.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 456888899999999889999999988887777888888888887743 2233778888888888899999999999
Q ss_pred HHHhcCCHHHH----HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHH----hCCCCC----ChhhHHH
Q 001797 357 GICKAGEIEKA----KGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAK-AYELLVDMK----KRNLSP----TAYTCNV 423 (1012)
Q Consensus 357 ~~~~~g~~~~A----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----~~~~~~----~~~~~~~ 423 (1012)
+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |...+.++. .+.+.| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 88898887755 4666778888899998899888888888877643 333333332 222222 3445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 001797 424 IINGLCRCSDLEGACRVFEEMIACG----LKPN---NFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLIS 496 (1012)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 496 (1012)
.+..|.+..+.+-|.++..-..... +.|+ .+-|..+....|+....+.-...++.|+-.-.-|+..+...++.
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 6777777778777777765543321 1222 23455566667777777777777777766655566666666666
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCC
Q 001797 497 GLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI---IYTTLIDGHCKEGN 573 (1012)
Q Consensus 497 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~ 573 (1012)
+..-.|.++-..+++.+++..|...+.... ++++..+.+....|+.. -+..+..-+. . +
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-a-d 503 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCA-A-D 503 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHH-H-H
Confidence 666666666666666666665433222211 12222222222222211 1111111000 0 1
Q ss_pred hHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHH---HHHHHHHhcCCHHHHH
Q 001797 574 VKEA-FSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKG-LVPDVITYS---SLISGFCKQGFIKEAF 648 (1012)
Q Consensus 574 ~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~---~li~~~~~~g~~~~A~ 648 (1012)
+.++ ...-.++..... .....+.++-.+.+.|..++|.++|.-+.+++ -.|-....+ -+++.....++...|.
T Consensus 504 ~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 111122333322 33445556666667777777777777664432 122222233 3334445556666666
Q ss_pred HHHHHHHHC
Q 001797 649 QLHEKMCES 657 (1012)
Q Consensus 649 ~~~~~~~~~ 657 (1012)
..++-|...
T Consensus 582 ~~lQ~a~~~ 590 (625)
T KOG4422|consen 582 EVLQLASAF 590 (625)
T ss_pred HHHHHHHHc
Confidence 666666544
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.74 E-value=4e-12 Score=139.41 Aligned_cols=527 Identities=16% Similarity=0.096 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 001797 156 VVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINA 235 (1012)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 235 (1012)
++|..||..|+..|+.+.|- +|..| +-.........++.+..+-...++.+.+. .|-+.||+.+..+
T Consensus 26 vtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~a 92 (1088)
T KOG4318|consen 26 VTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKA 92 (1088)
T ss_pred hhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHH
Confidence 67899999999999998888 77777 65566666666776666655566554332 5788999999999
Q ss_pred HHhcCChHHHHHHHHHHHHh----------hcChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001797 236 HFRAGNVKAAQRVLFEMEEK----------VGAIDEAFELKESMI-HKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKM 304 (1012)
Q Consensus 236 ~~~~g~~~~A~~~~~~~~~~----------~g~~~~A~~~~~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 304 (1012)
|.+.|++.. |+..+.. .|.-..-..+.-.+. ..+..||..+ .+....-.|-++.+.+++..+
T Consensus 93 yr~hGDli~----fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 93 YRIHGDLIL----FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHhccchHH----HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhC
Confidence 999999765 3333321 222222222222111 1123344433 222233356666666666555
Q ss_pred HhCC-CCCCHhHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 001797 305 YDLK-LNPNEVVYTTLINGFMK-QGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPD 382 (1012)
Q Consensus 305 ~~~~-~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 382 (1012)
.... ..|-.+ .++-... .-.+++-..+.....+ .|+..+|..++++-.-.|+++-|..++.+|.+.|++-+
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred CcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 4321 111111 1222211 1223333333333332 47788888888888888888888888888888887777
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001797 383 TQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQA 462 (1012)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 462 (1012)
..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+.--+..+..+|....+.+.... ........+..+.++
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~----~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL----AHGFTAAVRSAACRG 311 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch----hhhhhHHHHHHHhcc
Confidence 6655566554 677777777788888888888888877766666665542222111100 000011122222222
Q ss_pred HHhcCCHH-----HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCC-chhhHHHHHHHHH
Q 001797 463 HLRQNRFE-----EAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANG--LKP-NLYTYGAFIREYT 534 (1012)
Q Consensus 463 ~~~~g~~~-----~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~-~~~~~~~l~~~~~ 534 (1012)
.....+++ .....+.+..-.|.......|...+. ...+|+-++..++-..+..-- ..+ ++..|..++..|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111111 11111222111222222223322222 223555555555554443211 111 2223433333333
Q ss_pred hcC----------------------CHHHHHHHHHHHHH----------------CCCC-------CCHHHHHHHHHHHH
Q 001797 535 KTG----------------------NMQAADRYFQEMLN----------------CGIA-------PNDIIYTTLIDGHC 569 (1012)
Q Consensus 535 ~~g----------------------~~~~A~~~~~~~~~----------------~~~~-------~~~~~~~~li~~~~ 569 (1012)
+.- +..+..++...... .... +-...-+.++..++
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 221 11111111111000 0000 00112334444445
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 001797 570 KEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKG--LVPDVITYSSLISGFCKQGFIKEA 647 (1012)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A 647 (1012)
..-+..+++..-+.....- . ...|..||+-++...+.+.|....+++.... ...|..-+..+.+.+.+.+...++
T Consensus 471 se~n~lK~l~~~ekye~~l-f--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLL-F--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHH-h--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 4444444443333332211 1 1446667777777777777777776665321 223444566666667777777777
Q ss_pred HHHHHHHHHCCC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 001797 648 FQLHEKMCESGI-TPN-IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEM 724 (1012)
Q Consensus 648 ~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~ 724 (1012)
..++.++.+.-. .|+ ..+.--+.+.....|+.+.-.++++-+...|+..+ ..++....+.++...|.+..+..
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHH
Confidence 777777665311 111 22333444555556777766666666665544321 22333344455555555554443
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=7.5e-13 Score=134.79 Aligned_cols=421 Identities=12% Similarity=0.084 Sum_probs=251.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 535 KTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALE 614 (1012)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 614 (1012)
..+++..|..+|+.++... ..+...|...+.+-.++.++..|..++++.+.. .|.-...|.-.+.+--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 3445555555555555433 344445555555555555555555555555543 11112233334444444455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 001797 615 VFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAK-G 693 (1012)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 693 (1012)
+|.+-.+ ..|+...|.+.|..-.+....+.|..++++.+-. .|++..|...+..-.+.|.+..|..+|...++. |
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 5555444 2455555555555555555555555555555432 355555555555555555555555555555543 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHH--------HHHHHHHHHc
Q 001797 694 L-TPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD--NFVYCTLVDGCCRDGNMEKA--------LSLFLEMVQK 762 (1012)
Q Consensus 694 ~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd--~~~~~~l~~~~~~~g~~~~A--------~~~~~~~~~~ 762 (1012)
- ..+...+.+...--.+++.++.|.-+|+-.+.. ++.+ ...|..+..---+-|+.... .--|+..+..
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 001122233333333455556666666555543 2222 12233332222233332222 1235667777
Q ss_pred CCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-----H---HHhcCCHHHHHHHHHHHHHCC
Q 001797 763 GLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV--TYTILID-----Y---HCKAGTMKDAEHLLVEMQKRV 832 (1012)
Q Consensus 763 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-----~---~~~~g~~~~A~~~~~~~~~~~ 832 (1012)
+|.+..+|...+..-...|+.+...++|++.+.. ++|-.. .|...|. + -....+.+.+.++|+..++.
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 7777778877777777788888888888888764 555221 2222111 1 13567888888888888873
Q ss_pred CCCChHHHHHHH----HHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 001797 833 LKPNFRTYTSLL----HGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQN 908 (1012)
Q Consensus 833 ~~p~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 908 (1012)
++-...|+..+- ..-.++-++..|.+++..++ |.-|-..++...+..-.+.++++...++|++.+.-+ |.+..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhH
Confidence 333444555332 23345678888888888887 788888888888888888888999999999888887 77888
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHH
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVY----EAGNIDKATRFLESMIK 970 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~ 970 (1012)
+|...+..-...|+.+.|..+|.-+++ +|.-.....+...|. ..|.+++|..+++++++
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~---qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAIS---QPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhc---CcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 888888888888999999998888875 566666666666653 67888899999988887
No 39
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-12 Score=132.02 Aligned_cols=361 Identities=17% Similarity=0.226 Sum_probs=199.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 001797 345 KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVI 424 (1012)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 424 (1012)
+....+|..||.|+||--..+.|.+++.+......+.+..++|.+|.+-.-. ...++..+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4456778888888888888888888888877666677778888877653321 226677788877778888888888
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHH----hhhCCCCC----CHHHH
Q 001797 425 INGLCRCSDLEG----ACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEE-AINILKG----MTGKGVLP----DVFCY 491 (1012)
Q Consensus 425 i~~~~~~g~~~~----A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~----~~~~~~~~----~~~~~ 491 (1012)
+.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.+ +..+...| |..-+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 888888887655 45677777888888888888888887777776643 3333332 22222222 23334
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC----CCCc---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 492 NSLISGLCKAKKMEDARSCLVEMTANG----LKPN---LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTL 564 (1012)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 564 (1012)
..-+..+....+.+-|.++..-+.... +.|+ ...|..+....|+....+.....|+.|+-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 444455556666666666554433211 1122 223445666666666666666666666655555666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CC
Q 001797 565 IDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQ-GF 643 (1012)
Q Consensus 565 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~ 643 (1012)
+.+....+.++-.-+++..++..|..-+.... .+++..+....+.|+...-..+-....+. -+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad 503 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLLARDKLHPLTPEREQLQVAFAKCAAD 503 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 66666666666666666655554322111111 12222333322233222111111111110 01
Q ss_pred HHHH-HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCCHHHHH
Q 001797 644 IKEA-FQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGL----TPTVVTYTTIIDGYCKSGNLTEAF 718 (1012)
Q Consensus 644 ~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~ 718 (1012)
+.++ ...-.+|.+. .......+..+-.+.+.|+.++|.++|.-+.+++. .|.......+++.-.+.+.+..|+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 1111 1111223332 22333455555566777777777777777654422 122233334444455566666666
Q ss_pred HHHHHhhhC
Q 001797 719 QLVNEMPSR 727 (1012)
Q Consensus 719 ~l~~~~~~~ 727 (1012)
..++-|...
T Consensus 582 ~~lQ~a~~~ 590 (625)
T KOG4422|consen 582 EVLQLASAF 590 (625)
T ss_pred HHHHHHHHc
Confidence 666666544
No 40
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.70 E-value=1.2e-11 Score=134.49 Aligned_cols=436 Identities=14% Similarity=0.080 Sum_probs=220.1
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 001797 487 DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDI-IYTTLI 565 (1012)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li 565 (1012)
|...|..|.-++...|+++.+.+.|++.....+ -....|..+...+...|.-..|..+++........|+.. .+...-
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 444455555555555555555555555443211 133445555555555555555555555544332122222 222222
Q ss_pred HHH-HhcCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHH
Q 001797 566 DGH-CKEGNVKEAFSTFRCMLGR--GI--LPDLKTYSVLIHGLSRC-----------GKIHEALEVFSELQDKGLVPDVI 629 (1012)
Q Consensus 566 ~~~-~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 629 (1012)
..| -+.+.+++++..-.++++. +. ......|..+.-+|... ....++++.+++..+.+.. |+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-Cch
Confidence 222 2234455555444444431 10 11223333333333321 1234566666666655432 332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 001797 630 TYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYC 709 (1012)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 709 (1012)
..-.+.--|...++.+.|.+...+.++.+...+...|..|.-.+...+++.+|+.+.+..... ...|......-+..-.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhhhhh
Confidence 223333345666777777777777777655666777777777777777777777777776654 1112221122222333
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCch-hhHHHHHHHHHhcCcHHHH
Q 001797 710 KSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQ--KGLAST-SSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 710 ~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~g~~~~A 786 (1012)
.-++.++|+.....+... +. +..... ..++-.........+.- ..+.+. ..+..+.......+.....
T Consensus 559 ~~~~~e~~l~t~~~~L~~-we-~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLAL-WE-AEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hcccHHHHHHHHHHHHHH-HH-hhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 456666666666655431 00 000000 00111111111111100 011111 2222222211111100000
Q ss_pred HHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHH
Q 001797 787 NKLLEDMADKHITP--N------HVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFA 858 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 858 (1012)
... +......| + ...|......+.+.++.++|...+.++... .+-....|...+..+...|+.+||.+
T Consensus 630 e~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 630 ELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 000 11111111 1 124455566667777777777766666643 23355566666677777788888888
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHH--HHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 859 LFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIK--LVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 859 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.|..++. ++| ++.....++.++.+.|+..-|.+ ++..++..+ |.+...|..++.++.+.|+.++|.+.|..+.+
T Consensus 706 af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 706 AFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 8877774 666 45667777788888887777766 777777776 66778888888888888888888888777766
Q ss_pred CCCCCCHH
Q 001797 936 KEIKLSHA 943 (1012)
Q Consensus 936 ~g~~p~~~ 943 (1012)
+++++|
T Consensus 783 --Le~S~P 788 (799)
T KOG4162|consen 783 --LEESNP 788 (799)
T ss_pred --hccCCC
Confidence 555544
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-13 Score=140.91 Aligned_cols=411 Identities=12% Similarity=0.069 Sum_probs=252.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 001797 492 NSLISGLCKAKKMEDARSCLVEMTANGLKPN-LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN-DIIYTTLIDGHC 569 (1012)
Q Consensus 492 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~ 569 (1012)
-...+-|.++|++++|+++|...++. .|| ++.|.....+|...|++++..+.-...++. .|+ +.++..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 34455677788888888888887774 455 667777777888888888888777777764 343 445666666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHh---CCCCCCHHHHHHHHHHH
Q 001797 570 KEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFS--------ELQD---KGLVPDVITYSSLISGF 638 (1012)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~---~~~~~~~~~~~~li~~~ 638 (1012)
..|++++|+.-..- .++..++....-..-+.++++ +-.. ....|+.....+....+
T Consensus 195 ~lg~~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 195 QLGKFDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred hhccHHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 77777777542222 222222222222222222222 1111 11234443333333322
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhC-CCC-----CCH------HHHHHHH
Q 001797 639 CKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCK-SGELERARELFDGIFAK-GLT-----PTV------VTYTTII 705 (1012)
Q Consensus 639 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~~~-----p~~------~~~~~li 705 (1012)
-.. +. ..+...+...|...-..+-..+.. ...+.+|...+.+-... ... .|. .+...-.
T Consensus 262 ~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 262 HAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred ccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 110 00 000000000011100111000110 01233333333222110 000 011 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 785 (1012)
..+.-.|+.-.|...|+..+.....+ ...|..+...|....+.++....|.++...+|.++.+|..-++++.-.+++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 12334678888888888888753222 22377777788888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHH
Q 001797 786 ANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 864 (1012)
|..-|++.+. +.| +...|..+.-+..+.++++++...|++..++ ++..+..|+.....+..+++++.|.+.|+.++
T Consensus 413 A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999887 445 4456777777777888999999999988875 66677788888888989999999999999888
Q ss_pred HcCCCCC-------HHHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 865 ERGVEPD-------GVIY--SMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 865 ~~~~~p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+ +.|+ +..+ ..++-. .-.+++..|+.+++++.+.+ |....+|.+|+......|+.++|+++|++...
T Consensus 490 ~--LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 E--LEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h--hccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6 4443 1222 222222 23488999999999999886 66778899999999999999999999988764
No 42
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=2e-09 Score=119.51 Aligned_cols=692 Identities=12% Similarity=0.160 Sum_probs=386.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 001797 157 VFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAH 236 (1012)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (1012)
+-...+.+|+..|.+++++-.. ++.|..|+.. .++..+.+ -.++.+.++...|..... ...-.+.+...+
T Consensus 483 vp~KVi~cfAE~Gqf~KiilY~----kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlF 552 (1666)
T KOG0985|consen 483 VPAKVIQCFAETGQFKKIILYA----KKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLF 552 (1666)
T ss_pred CcHHHHHHHHHhcchhHHHHHH----HHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHH
Confidence 3455777888888888887665 4558889854 45666666 567888888777776332 233455666666
Q ss_pred HhcCChHHHHHHHHHHHHh----hc---------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001797 237 FRAGNVKAAQRVLFEMEEK----VG---------AIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKK 303 (1012)
Q Consensus 237 ~~~g~~~~A~~~~~~~~~~----~g---------~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (1012)
........+..++-.+... .| +.-.|-.+.+.++..+.-. -.-+..+.+.|-+.|-+..|++.+.+
T Consensus 553 me~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFt-HyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 553 MELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFT-HYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred HHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccc-cccHHHHHHHHHhcchHHHHHHhccc
Confidence 6666666666665554432 00 1112233333344333321 22267788888899999999988877
Q ss_pred HHhCCCCCCHhHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 001797 304 MYDLKLNPNEVVYTT-----LINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRL- 377 (1012)
Q Consensus 304 ~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 377 (1012)
..+.. .. ++-+. -...|.-.-.++.+.+.++.|...++.-|..+.-.+..-|+..=-.+.-.++|+.....
T Consensus 632 l~DIK--R~-vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~e 708 (1666)
T KOG0985|consen 632 LYDIK--RV-VVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYE 708 (1666)
T ss_pred HHHHH--HH-HHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccch
Confidence 65421 11 11111 12344555688999999999999888878777766666676655555566666654332
Q ss_pred ----------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH------------HhCCC---CC-----ChhhHH-----
Q 001797 378 ----------GINPDTQTYNSLIEGCYRENNMAKAYELLVDM------------KKRNL---SP-----TAYTCN----- 422 (1012)
Q Consensus 378 ----------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------------~~~~~---~~-----~~~~~~----- 422 (1012)
++..|....-..|.+.|+.|++.+..++.++- ++..+ -| |...+.
T Consensus 709 GL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvl 788 (1666)
T KOG0985|consen 709 GLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVL 788 (1666)
T ss_pred hHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHH
Confidence 24456666667899999999998887776541 11111 11 111111
Q ss_pred --------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 001797 423 --------VIINGLCRCSDLEGACRVFEEMIACGLKPNNF-----------VYTTLIQAHLRQNRFEEAINILKGMTGKG 483 (1012)
Q Consensus 423 --------~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-----------~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 483 (1012)
..|..|.+.=+....-.+...++..++.-+.. .-..|+.-.-+.+++.--...++.....|
T Consensus 789 YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG 868 (1666)
T KOG0985|consen 789 YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG 868 (1666)
T ss_pred HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 12222322222222222222222211111100 00112222334445555555666666666
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH------HHCCCCCC
Q 001797 484 VLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEM------LNCGIAPN 557 (1012)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~~~~~ 557 (1012)
.. |..++|.|...|...++-.+- ..+. +...=+....-||...+..-|.-.+++- +. +...
T Consensus 869 ~~-d~a~hnAlaKIyIDSNNnPE~------fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~--vcNe 935 (1666)
T KOG0985|consen 869 SQ-DPATHNALAKIYIDSNNNPER------FLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELIN--VCNE 935 (1666)
T ss_pred Cc-chHHHhhhhheeecCCCChHH------hccc----CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHH--hcCc
Confidence 55 666777766666554432221 0111 1111111222233322222111111100 00 0000
Q ss_pred HHHHHHHHHHHHhcCChHHH-----------HHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 001797 558 DIIYTTLIDGHCKEGNVKEA-----------FSTFRCMLGRGI--LPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGL 624 (1012)
Q Consensus 558 ~~~~~~li~~~~~~g~~~~A-----------~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 624 (1012)
-..|....+.+.+..+.+-= ..+.++....++ ..|+.....-+.++...+-..+-+++++++.-.+-
T Consensus 936 NSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S 1015 (1666)
T KOG0985|consen 936 NSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNS 1015 (1666)
T ss_pred hhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCc
Confidence 11122222222222222111 122223322222 23455556666777777777888888877764311
Q ss_pred C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 001797 625 V--PDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYT 702 (1012)
Q Consensus 625 ~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 702 (1012)
. -+...-+.++-...+ .+.....+..+++-.-. .| .+.......+-+++|..+|++.-- +..+..
T Consensus 1016 ~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~ 1082 (1666)
T KOG0985|consen 1016 VFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------DIAEIAIENQLYEEAFAIFKKFDM-----NVSAIQ 1082 (1666)
T ss_pred ccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------hHHHHHhhhhHHHHHHHHHHHhcc-----cHHHHH
Confidence 1 111122333322222 34455555665554321 11 233344556678888888876532 444455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
.||. .-+..+.|.++.++.. ....|..+..+-.+.|...+|++-|-++ +++..|...++...+.|+
T Consensus 1083 VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1083 VLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred HHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc
Confidence 5553 3567788887777643 3457888888888888888888776543 456788888888899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 783 IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
|++-.+.+....++.-.|... ..|+.+|++.++..+-++++ ..||......+++-|...|.++.|.-+|..
T Consensus 1149 ~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 999888888777765555554 57888888888887776654 467777778888888888888888777665
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH
Q 001797 863 MVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 863 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
.- .|..|+..+...|+++.|.+..+++- +..+|.....+|...+.+.-|
T Consensus 1220 vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1220 VS---------NFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hh---------hHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHH
Confidence 42 46677777777888888777665542 445676666666666555444
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.4e-12 Score=132.83 Aligned_cols=362 Identities=13% Similarity=0.110 Sum_probs=232.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHH
Q 001797 555 APNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDV--ITYS 632 (1012)
Q Consensus 555 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~ 632 (1012)
..|...+-..+-.+-+.|....|++.|...+.. .|-.-.+|..|.... .+.+.+. .+... ...|. ..--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHhc-CcccchHHHHH
Confidence 334444444444555666677777777666554 122333333332221 1222221 11111 11111 1112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHH
Q 001797 633 SLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLT--PTVVTYTTIIDGYCK 710 (1012)
Q Consensus 633 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~ 710 (1012)
.+..++....+.+++++-.+.....|++.+...-+....+.....++|+|+.+|+++.....- .|..+|..++ |.+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHH
Confidence 233455566677888888888888887777666666666777778888888888888876211 1455666554 333
Q ss_pred cCCHHHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 711 SGNLTEAFQLVNEMPS--RGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~--~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
..+-. +.++.+-.. ..+.| .|...+.+-|+-.++-++|...|+++++.+|....+|..++.-|...++...|.+
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~--ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRP--ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCc--cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 122221111 11333 4666777777777888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 001797 789 LLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867 (1012)
Q Consensus 789 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 867 (1012)
.++..++- .+.|...|-.|+.+|.-.+...=|+-+|+++.+ +.| |...|.+|+.+|.+.++.++|++.|..++..|
T Consensus 386 sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 386 SYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 88888874 234777888888888888888888888888876 445 67788888888888888888888888888643
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCccC--HHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 868 VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR----GLVLN--QNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 868 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
- .+...+..|++.|-+.++.++|...|++.++. |...+ ..+-.-|+.-+.+++++++|.........
T Consensus 463 d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 463 D-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred c-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 2 24567778888888888888888888877763 21112 22222366677788888888777766654
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=4.2e-10 Score=119.55 Aligned_cols=599 Identities=13% Similarity=0.123 Sum_probs=333.8
Q ss_pred HHHHHHHHHhhhcCC---CchHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001797 138 QILESFLMCYRERNV---SGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVY 214 (1012)
Q Consensus 138 ~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~ 214 (1012)
..+.++-+|+..|-. .-|.+|-.-.....++|++-.-...|+++++.....--...|-..+.-+-..+-++.+..+|
T Consensus 82 ~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 82 PAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 344555555443321 34578888888999999999999999999765555445677888888888888889999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 001797 215 DVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRL 294 (1012)
Q Consensus 215 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~ 294 (1012)
++.+... +..-+-.|..+++.+++++|.+.+..+...... ..+.|. .+-..|+-+-+...++-+.
T Consensus 162 rRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f----------~sk~gk-Sn~qlw~elcdlis~~p~~ 226 (835)
T KOG2047|consen 162 RRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEF----------VSKKGK-SNHQLWLELCDLISQNPDK 226 (835)
T ss_pred HHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhh----------hhhccc-chhhHHHHHHHHHHhCcch
Confidence 9998753 334677788899999999998888876553100 011122 2333455544444443322
Q ss_pred h---HHHHHHHHHHhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 295 E---DAKLLLKKMYDLKLNPNE--VVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKG 369 (1012)
Q Consensus 295 ~---~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (1012)
- ....++..+... -+|. ..|.+|.+.|.+.|.++.|.+++++.... ...+.-++.+-++|..-..-.-+..
T Consensus 227 ~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~ 302 (835)
T KOG2047|consen 227 VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAK 302 (835)
T ss_pred hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHH
Confidence 2 222333333332 2333 45677777777777777777777777654 2344445555555543221111111
Q ss_pred HHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 370 LMTEMLRL-GINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACG 448 (1012)
Q Consensus 370 ~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 448 (1012)
+ +-.... |-+.+.. +++-.+.-|+.+..+.. .+++.- ++..+
T Consensus 303 m-e~a~~~~~n~ed~~-------------dl~~~~a~~e~lm~rr~--------~~lNsV---------------lLRQn 345 (835)
T KOG2047|consen 303 M-ELADEESGNEEDDV-------------DLELHMARFESLMNRRP--------LLLNSV---------------LLRQN 345 (835)
T ss_pred H-hhhhhcccChhhhh-------------hHHHHHHHHHHHHhccc--------hHHHHH---------------HHhcC
Confidence 0 000001 1011111 12222233333333220 000000 00110
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc
Q 001797 449 LKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLP------DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPN 522 (1012)
Q Consensus 449 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 522 (1012)
+.++..|..-+. +..|+..+-...+.+..+. +.| -...|..+...|-..|+++.|+.+|++..+...+--
T Consensus 346 -~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 346 -PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred -CccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 122223322222 1234444444444444432 111 123455556666666666666666666655432211
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 001797 523 ---LYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVL 599 (1012)
Q Consensus 523 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (1012)
..+|..-...-.+..+++.|..+.+..... |.+.. ..+...+..-++. + ..+...|...
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v--P~~~~------~~~yd~~~pvQ~r-l---------hrSlkiWs~y 483 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHV--PTNPE------LEYYDNSEPVQAR-L---------HRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC--CCchh------hhhhcCCCcHHHH-H---------HHhHHHHHHH
Confidence 123333344444556666777766666542 22211 1223333322221 0 1145567777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHh---
Q 001797 600 IHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI-VTYNALIDGLCK--- 675 (1012)
Q Consensus 600 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--- 675 (1012)
++..-..|-++....+++++++..+. ++.........+....-++++++.+++-+..-..|++ ..|+..+.-+.+
T Consensus 484 ~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 77777778888888888888876543 3333223333344556678888888876665334443 346655554443
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 001797 676 SGELERARELFDGIFAKGLTPTVVTYTTI--IDGYCKSGNLTEAFQLVNEMPSRGVTPDNF--VYCTLVDGCCRDGNMEK 751 (1012)
Q Consensus 676 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~~~A~~l~~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~~ 751 (1012)
...++.|+.+|++.++ |++|...-+--| ...--+.|-...|++++++.... +++... .|+..|.--...--...
T Consensus 563 g~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~ 640 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPR 640 (835)
T ss_pred CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcc
Confidence 2468899999999988 666654322222 22233568888899999987654 554433 56666654444334556
Q ss_pred HHHHHHHHHHcCCCch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCH
Q 001797 752 ALSLFLEMVQKGLAST--SSFNALLNGLCKSQKIFEANKLLEDMADKHITP--NHVTYTILIDYHCKAGTM 818 (1012)
Q Consensus 752 A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 818 (1012)
.+.+|+++++.-|+.. ......++.-++.|.++.|..++....+- ++| +...|...-..-.+.|+-
T Consensus 641 TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 641 TREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred cHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCCH
Confidence 6788888888766554 45556777888888899888888776553 333 556677777777788883
No 45
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=5.4e-13 Score=136.69 Aligned_cols=222 Identities=14% Similarity=0.090 Sum_probs=172.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 567 GHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKE 646 (1012)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 646 (1012)
.+.-.|+...|..-|+..+.....++ ..|--+...|....+.++-.+.|....+.++. ++.+|..-...+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 44556888888888888887643322 23666777888888999999999988877654 66677777777888888999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 001797 647 AFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPS 726 (1012)
Q Consensus 647 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 726 (1012)
|..-|++.++.. +.+...|..+..+..+.+.++++++.|++...+ ++..+..|+....++..++++++|.+.|+..+.
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999988864 336777888888888889999999999999887 455677888888999999999999999998876
Q ss_pred CCCCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 727 RGVTPD-------N--FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 727 ~~~~pd-------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
. .|+ . .+..+++..- -.+++.+|..+++++++.+|....+|..|+..-.++|+.++|+++|++...
T Consensus 491 L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 L--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 333 1 1222222222 338899999999999999999999999999999999999999999988754
No 46
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.66 E-value=2.3e-10 Score=124.63 Aligned_cols=506 Identities=13% Similarity=0.088 Sum_probs=292.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 001797 430 RCSDLEGACRVFEEMIACGLKPNNFVYTTLIQA---HLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMED 506 (1012)
Q Consensus 430 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 506 (1012)
+.+...+++.-+.....++.+.+..++-.+-.+ |+..++.+++ ++-........|. .+.++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~R--------------e~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPR--------------ENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhcccc--------------ccHHH
Confidence 445667777777777777666666555554432 3445555555 2222222211121 11222
Q ss_pred HHH----HHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 001797 507 ARS----CLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFR 582 (1012)
Q Consensus 507 A~~----~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 582 (1012)
+.- .+.++....+.-|...|..+.-++...|+++.+.+.|++....- ......|..+...|...|.-..|..+++
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~ 381 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLR 381 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHH
Confidence 211 11222222233456666777777777888888888888876532 3445677777777888888778888777
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHH
Q 001797 583 CMLGRGILPDLK-TYSVLIHGLS-RCGKIHEALEVFSELQDK--GL--VPDVITYSSLISGFCKQ-----------GFIK 645 (1012)
Q Consensus 583 ~~~~~~~~~~~~-~~~~li~~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~ 645 (1012)
........|+.. .+......|. +.+..++++++-.+.... +. ......|..+.-+|... ....
T Consensus 382 ~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ 461 (799)
T KOG4162|consen 382 ESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHK 461 (799)
T ss_pred hhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHH
Confidence 765543223332 2222222222 345666666666655541 10 11223333333333221 1245
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 001797 646 EAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725 (1012)
Q Consensus 646 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 725 (1012)
++.+.+++..+.+.. |..+...+.--|.-.++++.|.....+..+.+...+...|..+.-.+...+++.+|+.+.+...
T Consensus 462 kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 462 KSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 566777777665422 3233333444466667777777777777776555677777777777777777777777777665
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC--CCCCCHH
Q 001797 726 SRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK--HITPNHV 803 (1012)
Q Consensus 726 ~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~ 803 (1012)
+. ..-|......-+..-..-++.+++......++..--....+ ...++-....+....+.-. .......
T Consensus 541 ~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s 611 (799)
T KOG4162|consen 541 EE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAIS 611 (799)
T ss_pred HH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccch
Confidence 54 22222222222223334566666666665554321100000 0111111112222221100 0011122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C------hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHH
Q 001797 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP--N------FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVI 874 (1012)
Q Consensus 804 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 874 (1012)
++..+.......+ +.+..-. .+......| + ...|......+.+.++.++|...+.++.. +.| .+..
T Consensus 612 ~sr~ls~l~a~~~--~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~ 686 (799)
T KOG4162|consen 612 TSRYLSSLVASQL--KSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASV 686 (799)
T ss_pred hhHHHHHHHHhhh--hhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHH
Confidence 3333322221111 1111000 022111222 2 12455666778889999999988888874 555 6678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHH--HHHHHhhCCCCCCHHHHHHHHHH-
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLK--LLDEMGDKEIKLSHATCCILISS- 951 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p~~~~~~~ll~~- 951 (1012)
|+..+..+...|++++|.+.|..++..+ |.+......++.++.+.|+..-|.+ ++..+++ ++|.++..|..++.
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr--~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR--LDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hCCCCHHHHHHHHHH
Confidence 8888899999999999999999999997 7778999999999999999988888 9999998 88999988888877
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 001797 952 VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 952 ~~~~g~~~~A~~~~~~~~~ 970 (1012)
+.+.|+.++|-+.|+..++
T Consensus 764 ~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHccchHHHHHHHHHHHh
Confidence 8899999999999998887
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=2.5e-13 Score=149.86 Aligned_cols=285 Identities=10% Similarity=0.071 Sum_probs=221.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHhcCCHHHHH
Q 001797 676 SGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYC--TLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 676 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~--~l~~~~~~~g~~~~A~ 753 (1012)
.|+++.|.+.+....+..-.| ...|........+.|++++|...+.++.+. .|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 689999998887765542111 233333344557899999999999999873 56654332 3356778899999999
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHH
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV-------TYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
..++++.+..|.++.++..++..|.+.|+|++|.+++..+.+.+..++.. +|..++.......+.+...++++
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999998865443221 23333333344455566666776
Q ss_pred HHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC
Q 001797 827 EMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN 906 (1012)
Q Consensus 827 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 906 (1012)
.+.+. .+.++.....++..+...|+.++|.+.+++..+ ..|++... ++.+....++.+++++.+++..+.. |.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 66443 445777888999999999999999999999986 45555433 2333446699999999999999886 788
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 907 QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 907 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 971 (1012)
+..+..++..+...|++++|.+.++++.+ ..|++..+..+...+.+.|+.++|.+++++-+..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 7899999888888899999999999999987663
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=3.2e-14 Score=152.17 Aligned_cols=204 Identities=17% Similarity=0.170 Sum_probs=97.0
Q ss_pred HHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-
Q 001797 758 EMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP- 835 (1012)
Q Consensus 758 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p- 835 (1012)
.+++.++..+.+|-+++++|.-+++.+.|++.|++.+. +.| ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 33444444444555555555555555555555554444 233 334444444444444555555555554442 222
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHH
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLA 914 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 914 (1012)
+...|..|+..|.+.++++.|.-.|+++++ +.| +......++..+.+.|+.++|+.+++++.... |-|+..-...+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence 222444445555555555555555555543 444 23333344444555555555555555555544 33444444445
Q ss_pred HHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 915 NSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 915 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
.++...+++++|...++++.+ +.|+....+.+++. |-+.|+.+.|+..|--+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 555555555555555555544 44555444444444 4444555555554444444
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3e-12 Score=134.14 Aligned_cols=284 Identities=14% Similarity=0.085 Sum_probs=226.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 001797 590 LPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNAL 669 (1012)
Q Consensus 590 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 669 (1012)
..+........+-+...+++.+..++++.+.+..+ +....+..-|.++.+.|+..+-+.+-.++++. .+....+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 34566667777788889999999999999988743 35566666677888999988888888888886 35578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 001797 670 IDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNM 749 (1012)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~ 749 (1012)
+..|.-.|+.++|++.|.+....... =...|-.+...|.-.|..|+|+..+..+-+. ++-....+..+.--|.+.+++
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 99999999999999999988764221 1247888899999999999999998887653 222223344555668889999
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCC--CC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 750 EKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKH--IT----PNHVTYTILIDYHCKAGTMKDAEH 823 (1012)
Q Consensus 750 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----p~~~~~~~l~~~~~~~g~~~~A~~ 823 (1012)
+.|.++|.++....|.++.+++.++-.....+.+.+|...|+..+..- +. .-..+++.|+.++.+.+.+++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999998876310 11 133468889999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 001797 824 LLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVD 880 (1012)
Q Consensus 824 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 880 (1012)
.+++.+.. .+.+..++.+++-.|...|+++.|++.|.+++ .+.|+..+...++.
T Consensus 477 ~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 99998874 34578889999999999999999999999988 48887765555543
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4e-14 Score=151.40 Aligned_cols=288 Identities=13% Similarity=0.096 Sum_probs=223.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001797 643 FIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGL--TPTVVTYTTIIDGYCKSGNLTEAFQL 720 (1012)
Q Consensus 643 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l 720 (1012)
+..+|+..|+++-.. +.....+...++.+|...+++++|.++|+.+..... --+...|.+.+.-+-+ .-+--.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence 457788888874443 333446667788888888888888888888876511 1245566666544322 1111222
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 001797 721 VNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP 800 (1012)
Q Consensus 721 ~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 800 (1012)
-+++++. -+-.+.+|.++.++|.-.++.+.|++.|+++++.+|....+|..++.=+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 3334432 2335679999999999999999999999999999998889999999999999999999999999876 334
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHH
Q 001797 801 N-HVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSM 877 (1012)
Q Consensus 801 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 877 (1012)
. ..+|..++..|.+.++++.|+-.|+++.+ +.| +.+....++..+.+.|+.++|+.+++++.. ++| |+-.-..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~ 562 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYH 562 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHH
Confidence 3 34677788889999999999999999986 455 666777888889999999999999999986 555 6666677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+..+...+++++|+..++++.+.. |.+..++..++.+|.+.|+.+.|+.-+.-|.+ ++|....
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~--ldpkg~~ 626 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALD--LDPKGAQ 626 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhc--CCCccch
Confidence 7888899999999999999999885 77889999999999999999999999999887 6675443
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=1.1e-15 Score=161.30 Aligned_cols=259 Identities=14% Similarity=0.237 Sum_probs=79.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc
Q 001797 704 IIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 704 li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
+...+.+.|++++|++++++......+|+.. .|..+.......++++.|+..+++++..++..+..+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3455556666666666664443332123222 333344444555666666666666666655555555555555 46666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHHccCChhHHHHHHH
Q 001797 783 IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV-LKPNFRTYTSLLHGYAGIGKRSEMFALFD 861 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 861 (1012)
+++|.+++++..+. .+++..+..++..+...|+++++..+++++.... .+++...|..++..+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666555443 2344455555666666666666666666655421 23355556666666666666666666666
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC
Q 001797 862 EMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL 940 (1012)
Q Consensus 862 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 940 (1012)
++++ ..| |......+++.+...|+.+++.++++...... +.++..+..++.++...|+.++|..+++++.+ ..|
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p 245 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNP 245 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HST
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--ccc
Confidence 6665 344 34555566666666666666666666665554 45555666666666666666666666666665 456
Q ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 941 SHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 941 ~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
+++.....++. +...|+.++|.+++.++.+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 55555555544 5566666666666655543
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.8e-12 Score=128.54 Aligned_cols=362 Identities=13% Similarity=0.099 Sum_probs=260.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hh-hHH
Q 001797 590 LPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN-IV-TYN 667 (1012)
Q Consensus 590 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~ 667 (1012)
..|...+......+-+.|..+.|++.|......-+ -.-..|..|... .-+.+. ...... +.+.| .. .--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~l---it~~e~----~~~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSEL---ITDIEI----LSILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHh---hchHHH----HHHHHh-cCcccchHHHHH
Confidence 33544444455566778889999999988776421 132333333322 222222 222222 22222 11 112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCC----CHHHHHHHHHHH
Q 001797 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTP----DNFVYCTLVDGC 743 (1012)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p----d~~~~~~l~~~~ 743 (1012)
-+..++......+++..-.......|++.+...-+....+.-...++++|+..|+++.+. .| |..+|..++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv- 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYV- 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHH-
Confidence 234455566678888888888888887766655555556667788999999999999886 33 34466555433
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAE 822 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 822 (1012)
+. +-.+---+-+.+.+.+.-.+.+.-.+++-|.-.++.++|...|++.++. .| ....|+.+++-|....+...|+
T Consensus 309 -~~-~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 -KN-DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred -Hh-hhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHH
Confidence 22 2222222333444445555577777888899999999999999999984 44 4568999999999999999999
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
+-++++++- .+.|...|-.|+.+|.-.+.+.=|+-+|+++.+ .+| |...|..|+++|.+.++.++|++-|+++...
T Consensus 385 ~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 385 ESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 999999974 344888999999999999999999999999997 667 8899999999999999999999999999998
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhC----C-CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHC
Q 001797 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK----E-IKLSHATCCILISS-VYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 902 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g-~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~ 971 (1012)
+ ..+..++..|++.|-+.++.++|...+++.++. | +.|........++. +.+.+++++|......+.+.
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 7 336789999999999999999999999987652 2 33433333333444 77999999999988877765
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=1.1e-12 Score=145.68 Aligned_cols=290 Identities=11% Similarity=0.060 Sum_probs=208.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHH
Q 001797 674 CKSGELERARELFDGIFAKGLTPT-VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF--VYCTLVDGCCRDGNME 750 (1012)
Q Consensus 674 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~ 750 (1012)
...|+++.|.+.+.+..+. .|+ ...+-....+..+.|++++|.+++.+..+. .|+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence 4578899999888887765 344 334444566777889999999999888764 34432 3344567778889999
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHH
Q 001797 751 KALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTI---LIDYHCKAGTMKDAEHLLVE 827 (1012)
Q Consensus 751 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~ 827 (1012)
+|...++.+.+..|.++.++..++..|...|++++|.+.+..+.+.+..+....... ........+..+++.+.+.+
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999988899999999999999999999999988754432221111 11111233333334445555
Q ss_pred HHHCC---CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 828 MQKRV---LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVI---YSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 828 ~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
+.+.. .+.+...+..++..+...|++++|.+.+++.++. .||... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 54421 1136778888889999999999999999999873 444331 111222334567888999999999888
Q ss_pred CCccCH--HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 902 GLVLNQ--NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 902 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
. |.++ ....++++.+.+.|++++|.+.++++......|++..+..+...+.+.|+.++|.+++++.+.
T Consensus 329 ~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 V-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 6677 788899999999999999999999533222679888877666668899999999999998655
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=5.3e-12 Score=123.89 Aligned_cols=447 Identities=13% Similarity=0.076 Sum_probs=286.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 531 REYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610 (1012)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 610 (1012)
.-+....++..|+.+++--...+-.....+-..+..++.+.|++++|...+..+... ..++...+..|.-++.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHH
Confidence 334456677777777776654432223334445667888888899988888887764 3556667777777777788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 611 EALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690 (1012)
Q Consensus 611 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 690 (1012)
+|..+-.+..+ ++.....+.....+.|+.++-..+.+.+... ..--.+|.......-.+++|++++++++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877654332 4445555666667788888777777766542 1223455556666667899999999988
Q ss_pred hCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh
Q 001797 691 AKGLTPTVVTYTTI-IDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS 768 (1012)
Q Consensus 691 ~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 768 (1012)
.. .|+....|.. .-+|.+..-++-+.+++.-.... .||.. ..+..+....+.=+-..|..-.+.+........
T Consensus 179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~- 253 (557)
T KOG3785|consen 179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY- 253 (557)
T ss_pred hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-
Confidence 75 3455554443 34566788888888888877764 44443 444444444443333334444444444332221
Q ss_pred hHHHHHHHHHhc-----CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 001797 769 SFNALLNGLCKS-----QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSL 843 (1012)
Q Consensus 769 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 843 (1012)
..+.-.+++ .+-+.|++++-.+.+ .-|. +-..|+-.|.++++.++|..+.+.+. ...|-......+
T Consensus 254 ---~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgv 324 (557)
T KOG3785|consen 254 ---PFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPE--ARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGV 324 (557)
T ss_pred ---hhHHHHHHcCeEEEeCCccHHHhchHHHh--hChH--hhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHH
Confidence 122222332 244667777777665 2333 33567777899999999999887654 233433333333
Q ss_pred HHHHH-----ccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 001797 844 LHGYA-----GIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 844 ~~~~~-----~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
+.+-. ......-|...|+-.-+.+..-| ...-..++..+.-..++++.+.+++....-- ..|...-..++.++
T Consensus 325 v~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk 403 (557)
T KOG3785|consen 325 VFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAK 403 (557)
T ss_pred HHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHH
Confidence 33221 11233345555544333222222 2233455666666778999999888877653 34555666799999
Q ss_pred hccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhccccccccc
Q 001797 918 CKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTS 997 (1012)
Q Consensus 918 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 997 (1012)
+..|++.+|++++-++..-.++.+.....++.++|...++.+-|..+ |++..-..+..+..++|.++|.. ..
T Consensus 404 ~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk-----~~ 475 (557)
T KOG3785|consen 404 LATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYK-----AN 475 (557)
T ss_pred HHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHH-----HH
Confidence 99999999999998876533444455556677779999999999887 56667667888999999999998 78
Q ss_pred ccHHHHHHhccccc
Q 001797 998 NSWKEAAAIGIADQ 1011 (1012)
Q Consensus 998 ~~~~~~~~~~~~~~ 1011 (1012)
.++..|+||+.++.
T Consensus 476 eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 476 EFYYAAKAFDELEI 489 (557)
T ss_pred HHHHHHHhhhHHHc
Confidence 89999999998764
No 55
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=1.4e-09 Score=121.24 Aligned_cols=663 Identities=10% Similarity=-0.019 Sum_probs=324.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHH
Q 001797 258 AIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKN 337 (1012)
Q Consensus 258 ~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (1012)
+...|+..|-+.++..+. -...|..|...|+..-+...|.+.|+...+.. ..+...+-.....|....++++|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 344555555444444332 24456666666666666666666666666544 3445555666666666666666666533
Q ss_pred HHHhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 001797 338 EMVTFGI-KLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSP 416 (1012)
Q Consensus 338 ~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 416 (1012)
...+... ..-...|....-.|.+.++...|..-|+...+.. +.|...|..+..+|...|++..|+++|.+....+ |.
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cH
Confidence 3222110 0011223333344555666666666666666543 2355666666666666666666666666665543 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------CC
Q 001797 417 TAYTCNVIINGLCRCSDLEGACRVFEEMIACG------LKPNNFVYTTLIQAHLRQNRFEEAINILKGMTG-------KG 483 (1012)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~ 483 (1012)
+...-.-..-..|..|.+.+|+..+...+..- ...-..++-.+...+...|-..+|...+++.++ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 33333333344456666666666665554320 000011222222222222222233333332221 11
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCC
Q 001797 484 VLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM---Q---AADRYFQEMLNCGIAPN 557 (1012)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~~~~~~ 557 (1012)
...+...|-.+.+ |..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++ ...+
T Consensus 709 ~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 1112222222211 112222211 00 11221111121111111111 1 11111111111 1122
Q ss_pred HHHHHHHHHHHHh----c----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 001797 558 DIIYTTLIDGHCK----E----GNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVI 629 (1012)
Q Consensus 558 ~~~~~~li~~~~~----~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 629 (1012)
..+|..++..|.+ . .+...|+..+.+.++.. ..+...|+.|.-. ...|.+.-|...|-+-....+. ...
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chh
Confidence 3445555544433 1 12345667777666542 3356666666544 5557777777777665554332 556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH--Hh--CCCCCCHHHHHHHH
Q 001797 630 TYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGI--FA--KGLTPTVVTYTTII 705 (1012)
Q Consensus 630 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~p~~~~~~~li 705 (1012)
+|..+...+.+..+++.|...|....... +.|...|..........|+.-++..+|..- .. .|-.|+..-|..-.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 67777777777888888888888776653 335555655555555667777777777652 21 13334444444444
Q ss_pred HHHHHcCCHHHHHHHHHHhhhC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CchhhH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSR---------GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQK---GL---ASTSSF 770 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~---------~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~ 770 (1012)
......|+.++-+...+.+... +.+.+...|...+...-+.+.+..|.+...+++.. .. ..+.+-
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4455666666555444443221 23334456666666666666666666665554321 11 111244
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCh-HHHHHHHHHHH
Q 001797 771 NALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKR-VLKPNF-RTYTSLLHGYA 848 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-~~~~~l~~~~~ 848 (1012)
..+++.++..|.++.|..-+...-. ..+......-+ +..-.|+++++.+.|+++..- .-..|. +....++.+..
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 4566777777777766544332211 00111111111 113457788888888887652 122232 23445556666
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCc-cCHHHHHHHHHHHhccccHH
Q 001797 849 GIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF---LRGLV-LNQNVYTSLANSLCKEEEFY 924 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~~~~~~~~l~~~~~~~g~~~ 924 (1012)
..+..+.|...+-+.... -+|+..+...+.-.+.-..+-.......+++. ..... -++. ...-..+.++|+-.
T Consensus 1087 ~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~--ll~e~i~~~~~r~~ 1163 (1238)
T KOG1127|consen 1087 LARQKNDAQFLLFEVKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG--LLKELIYALQGRSV 1163 (1238)
T ss_pred hcccchHHHHHHHHHHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh--HHHHHHHHHhhhhH
Confidence 677777777776666652 34455555555544333333222222222222 22100 0111 11223566778877
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 925 KVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 925 ~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
...+.+++..- ..|.++..|.++..
T Consensus 1164 ~vk~~~qr~~h--~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1164 AVKKQIQRAVH--SNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHHHHHHh--cCCCChHHHHHHHH
Confidence 77788888776 67888888888765
No 56
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=3.1e-12 Score=142.14 Aligned_cols=290 Identities=15% Similarity=0.088 Sum_probs=155.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARE 684 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 684 (1012)
..|+++.|.+.+.+..+.... ....+........+.|+++.|...+.++.+....+...........+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456677777766665554322 1233334445566667777777777766654322222233334556666777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHHHHHH
Q 001797 685 LFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYC-TLVDG---CCRDGNMEKALSLFLEMV 760 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~-~l~~~---~~~~g~~~~A~~~~~~~~ 760 (1012)
.++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+..+ ...+. ....+ ....+..+++.+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777776653 2244556666667777777777777777776654332 22121 11111 122222233334444454
Q ss_pred HcCC----CchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001797 761 QKGL----ASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVT---YTILIDYHCKAGTMKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 761 ~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 833 (1012)
+..| +++..+..++..+...|+.++|.+.+++..+. .|+... ...........++.+++.+.+++..+. .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-V 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-C
Confidence 4444 34466666666666666666666666666653 222221 011111223345566666666665543 2
Q ss_pred CCCh--HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 834 KPNF--RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 834 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+.|+ ....++++.+.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2233 444566666666666666666666433323556666666666666666666666666666543
No 57
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.59 E-value=2e-08 Score=108.00 Aligned_cols=384 Identities=15% Similarity=0.126 Sum_probs=170.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 001797 357 GICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEG 436 (1012)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (1012)
+-....++.+|..+++.+.... .-..-|..+.+-|...|+++.|.++|-+.- .++-.|.+|.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344555566666665554331 112234444555555566666655554321 23334555566666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 001797 437 ACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTA 516 (1012)
Q Consensus 437 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 516 (1012)
|.++-++.. |.......|.+-..-+-+.|++.+|.+++-.... |+. -|..|-+.|..++.+++.++-..
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 655554433 2222333444444445555666555555433221 222 24455555555555555443211
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----------
Q 001797 517 NGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLG---------- 586 (1012)
Q Consensus 517 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------- 586 (1012)
. .-..|-..+..-+-..|++..|..-|-+.-+ |.+-+++|-..+-+++|.++-+.--.
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFL 946 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHH
Confidence 1 0112333444455555555555554433321 33344444444444444433221000
Q ss_pred --CCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 587 --RGILPDL--------KTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCE 656 (1012)
Q Consensus 587 --~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 656 (1012)
+.+-.+. -....-++..+..+.++-|.++-+-..+. -.|.+ ...+..-+...|++++|.+.+-+.++
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhh
Confidence 0000000 00111222333444455555544433322 12222 22333345567777777777766665
Q ss_pred CCCCCChhhHH-------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHH
Q 001797 657 SGITPNIVTYN-------------------ALIDGLCKSGELERARELFDGIFAKGLTPTV--VTYTTIIDGYCKSGNLT 715 (1012)
Q Consensus 657 ~~~~~~~~~~~-------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~ 715 (1012)
.+. -..||. .-+.++.+.+++..|..+-+.- .|+. ..+..-..+-...|++.
T Consensus 1024 lnt--ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h-----~~~~l~dv~tgqar~aiee~d~~ 1096 (1636)
T KOG3616|consen 1024 LNT--YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAH-----CEDLLADVLTGQARGAIEEGDFL 1096 (1636)
T ss_pred ccc--ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhh-----ChhhhHHHHhhhhhccccccchh
Confidence 421 011111 1112333344444444333221 1221 22333334444566666
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH----------------HHHHcCCCchhhHHHHHHHHHh
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFL----------------EMVQKGLASTSSFNALLNGLCK 779 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~----------------~~~~~~~~~~~~~~~l~~~~~~ 779 (1012)
+|..++-+.. +||.. ++-|...+.|..|+.+.+ ..++.|......+..-+.-..+
T Consensus 1097 kae~fllran----kp~i~-----l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq 1167 (1636)
T KOG3616|consen 1097 KAEGFLLRAN----KPDIA-----LNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQ 1167 (1636)
T ss_pred hhhhheeecC----CCchH-----HHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHh
Confidence 6666554432 44432 122223333333333322 2344455555666667777778
Q ss_pred cCcHHHHHHHHHHH
Q 001797 780 SQKIFEANKLLEDM 793 (1012)
Q Consensus 780 ~g~~~~A~~~~~~~ 793 (1012)
.|+|.+|...+-++
T Consensus 1168 ~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1168 AGDWRKAVDALLKI 1181 (1636)
T ss_pred cccHHHHHHHHhhh
Confidence 88888887777665
No 58
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.59 E-value=4.7e-12 Score=139.78 Aligned_cols=284 Identities=15% Similarity=0.125 Sum_probs=150.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHH
Q 001797 606 CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIV--TYNALIDGLCKSGELERAR 683 (1012)
Q Consensus 606 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~ 683 (1012)
.|+++.|.+.+....+....| ...+........+.|+++.|...+.++.+. .|+.. ........+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666665544432111 222222233346667777777777776654 33322 2122345566667777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 001797 684 ELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-------VYCTLVDGCCRDGNMEKALSLF 756 (1012)
Q Consensus 684 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-------~~~~l~~~~~~~g~~~~A~~~~ 756 (1012)
..++++.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7777776653 2245556666667777777777777777776654332211 1222222222223334444444
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001797 757 LEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN 836 (1012)
Q Consensus 757 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 836 (1012)
+...+..++++.....++..+...|+.++|.+.+++..+. +|++.. .++.+....++.+++.+..++..+. .+.|
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~-~P~~ 327 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ-HGDT 327 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-CCCC
Confidence 4444444444555555666666666666666666665552 333321 1222333446666666666665543 2334
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+..+..++..+...|++++|.+.|+.+++ ..|+...+..++.++.+.|+.++|.+++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666666666666666666666654 455655555566666666666666666665544
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.58 E-value=4.5e-08 Score=104.55 Aligned_cols=220 Identities=12% Similarity=0.122 Sum_probs=127.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHH
Q 001797 663 IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVD 741 (1012)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~ 741 (1012)
...|..+++..-..|-++....+|+++++..+. ++.........+-.+..++++.+.+++-+..=-.|+.. +|+..+.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 445666777777778888888888888875332 22222223333455667788888888877652234433 5666655
Q ss_pred HHH---hcCCHHHHHHHHHHHHHcCCCch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHh
Q 001797 742 GCC---RDGNMEKALSLFLEMVQKGLAST--SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH--VTYTILIDYHCK 814 (1012)
Q Consensus 742 ~~~---~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 814 (1012)
-+. ....++.|+.+|+++++..|+.. ..|...+..-.+.|-...|..++++.... +++.. ..|+..|.--..
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 543 23467888888888888555332 45555566666778888888888886553 34322 355555543322
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHH---HHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCC
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRT---YTSLLHGYAGIGKRSEMFALFDEMVERGVEP--DGVIYSMMVDAYLKEGN 887 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 887 (1012)
.=-+..-..+|+++++. -|+... .......=.+.|..+.|+.++.-..+. .+| +...|..--..-.+.|+
T Consensus 635 ~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 22233344555555553 233221 112333445667777777776655542 233 45556555555566676
No 60
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.1e-08 Score=111.64 Aligned_cols=609 Identities=13% Similarity=0.141 Sum_probs=290.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 001797 318 TLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYREN 397 (1012)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 397 (1012)
.++.+|...|+++++.-...+ .|..||.. .++....+ -..+.+.++...|.+. .|...-.+.+.+.+...+
T Consensus 486 KVi~cfAE~Gqf~KiilY~kK---vGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~--~~~~~die~I~DlFme~N 556 (1666)
T KOG0985|consen 486 KVIQCFAETGQFKKIILYAKK---VGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQD--EEPLADIEQIVDLFMELN 556 (1666)
T ss_pred HHHHHHHHhcchhHHHHHHHH---cCCCccHH---HHHHHHHc-cChhHHHHHHHHhhcc--CCCcccHHHHHHHHHHHH
Confidence 345566666666666555433 35566643 33444433 4666666666666654 234445566666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 398 NMAKAYELLVDMKKRNLSPTAYTC-NVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINIL 476 (1012)
Q Consensus 398 ~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 476 (1012)
...++..++-..++.+ .|+.... +.++..- .-.|-++-+.++..+.. ...-+..+.+.+-+.|-...|++.+
T Consensus 557 ~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~N-----L~~aPqVADAILgN~mF-tHyDra~IAqLCEKAGL~qraLehy 629 (1666)
T KOG0985|consen 557 LIQQCTSFLLDALKLN-SPDEGHLQTRLLEMN-----LVHAPQVADAILGNDMF-THYDRAEIAQLCEKAGLLQRALEHY 629 (1666)
T ss_pred hhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHH-----hccchHHHHHHHhcccc-ccccHHHHHHHHHhcchHHHHHHhc
Confidence 6666666666666554 4443222 2222211 11122222222322211 1222555666677777777777766
Q ss_pred HHhhhCCCCCCHHHHHHH-----HHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 477 KGMTGKGVLPDVFCYNSL-----ISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLN 551 (1012)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 551 (1012)
.++... . ..+..+.+ +-.|.-.-.++++.++++.|...++.-+..+...+..-|+..=-.+.-.++|+....
T Consensus 630 tDl~DI--K-R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks 706 (1666)
T KOG0985|consen 630 TDLYDI--K-RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKS 706 (1666)
T ss_pred ccHHHH--H-HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhcc
Confidence 654331 0 11111111 223444556777888888888777776766666666666655555555555555432
Q ss_pred C-----------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------CC---CC-----CHHHHHHHH
Q 001797 552 C-----------GIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR------------GI---LP-----DLKTYSVLI 600 (1012)
Q Consensus 552 ~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------~~---~~-----~~~~~~~li 600 (1012)
. ++..|+.+.-..|.+.|+.|++.+..++.++---. .. .| |..-+..=+
T Consensus 707 ~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdl 786 (1666)
T KOG0985|consen 707 YEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDL 786 (1666)
T ss_pred chhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHH
Confidence 1 24556666677888999999998888776542110 00 00 111111112
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--------------------------HHHHhcCCHHHHHHHHHHH
Q 001797 601 HGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLI--------------------------SGFCKQGFIKEAFQLHEKM 654 (1012)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li--------------------------~~~~~~g~~~~A~~~~~~~ 654 (1012)
-.|.-.++..+-+++|-+-..-+- .+.....++ .-..+.++..--..+++..
T Consensus 787 vlYLyrnn~~kyIE~yVQkvNps~--~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~ 864 (1666)
T KOG0985|consen 787 VLYLYRNNLQKYIEIYVQKVNPSR--TPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESL 864 (1666)
T ss_pred HHHHHHhhHHHHHHHHHhhcCCcc--cchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHH
Confidence 233334444444444443322111 112212211 1223444555566667777
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHH-HH---HHHHH-----HhC------------CCC--------CCHHHHHHHH
Q 001797 655 CESGITPNIVTYNALIDGLCKSGELERA-RE---LFDGI-----FAK------------GLT--------PTVVTYTTII 705 (1012)
Q Consensus 655 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~---~~~~~-----~~~------------~~~--------p~~~~~~~li 705 (1012)
+..|.. |..++|+|...|..+++-.+- ++ .|+.. .++ |.. .....|....
T Consensus 865 i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~a 943 (1666)
T KOG0985|consen 865 IQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQA 943 (1666)
T ss_pred HhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHH
Confidence 777755 888899988888776543221 10 11111 111 100 0011122222
Q ss_pred HHHHHcCCHH---HHH--------HHHHHhhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--hhH
Q 001797 706 DGYCKSGNLT---EAF--------QLVNEMPSRGVT--PDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST--SSF 770 (1012)
Q Consensus 706 ~~~~~~g~~~---~A~--------~l~~~~~~~~~~--pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 770 (1012)
+-+.+..+.+ +.+ .+.++.+..+++ .|+.....-+.++...+-..+-++++++++-.+.... ...
T Consensus 944 RYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 944 RYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred HHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh
Confidence 3333333322 111 222222222221 2344445556677777777788888887765433222 111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------------------
Q 001797 771 NALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV------------------ 832 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------ 832 (1012)
..|.-.-.-.-+.....+..+++-.. -.|+. +......+-+++|..+|++.--.+
T Consensus 1024 QnLLiLtAikad~trVm~YI~rLdny-Da~~i------a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1024 QNLLILTAIKADRTRVMEYINRLDNY-DAPDI------AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYE 1096 (1666)
T ss_pred hhhHHHHHhhcChHHHHHHHHHhccC-CchhH------HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHH
Confidence 11111111112222333333333221 01111 112222333333333333211000
Q ss_pred ---CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 001797 833 ---LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV 909 (1012)
Q Consensus 833 ---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 909 (1012)
--..+..|..++.+-...|.+.+|++-|-++ .|+..|...++...+.|+|++-.+++..+.++. ..+.+
T Consensus 1097 fAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--~E~~i 1168 (1666)
T KOG0985|consen 1097 FAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--REPYI 1168 (1666)
T ss_pred HHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--cCccc
Confidence 0012334566666666666666665544332 144556666666666666666666665555553 23334
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 910 YTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 910 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
-..|+-+|.+.++..+-+++. .-|+..........++..|.++.|.-+|..+-.
T Consensus 1169 d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1169 DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 445555666666655544433 235555555555555666666666666655444
No 61
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.58 E-value=3.3e-08 Score=110.68 Aligned_cols=649 Identities=10% Similarity=-0.011 Sum_probs=387.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 291 NKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGL 370 (1012)
Q Consensus 291 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (1012)
.++...|...|-+..... +.=...|..|+..|+..-+...|.+.|+.+.+.+ ..+...+....+.|.+..+++.|..+
T Consensus 471 rK~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 455777777777776653 2234678888888888888888999999888765 45777888888889999999998888
Q ss_pred HHHHHHcCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 371 MTEMLRLGINPDT--QTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACG 448 (1012)
Q Consensus 371 ~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 448 (1012)
.-...+.. +.-. ..|.-..-.|...++...|..-|+...... |.|...|..++.+|..+|++..|.++|.++...
T Consensus 549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 44443321 1111 223334445667888888888888888776 678888899999999999999999999887764
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----
Q 001797 449 LKPNN-FVYTTLIQAHLRQNRFEEAINILKGMTGK------GVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTA----- 516 (1012)
Q Consensus 449 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 516 (1012)
+|+. ..-.-.....|..|++.+|+..+...... +...-..++-.+...+.-.|-..+|...+++-++
T Consensus 626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4443 22223334567788888888888766532 1111122333333333333444444444443322
Q ss_pred --CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHhCC
Q 001797 517 --NGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNV---K---EAFSTFRCMLGRG 588 (1012)
Q Consensus 517 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~---~A~~~~~~~~~~~ 588 (1012)
.....+...|..+.+ |..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++
T Consensus 705 l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 111112222222222 222222221 11 22222222222212222221 1 11111111111
Q ss_pred CCCCHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 001797 589 ILPDLKTYSVLIHGLSR--------CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGIT 660 (1012)
Q Consensus 589 ~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 660 (1012)
...+..+|..++..|.+ ..+...|+..+.+.++.. ..+..+|+.|.-. ...|++.-|...|-+-.... +
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p 847 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-P 847 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-c
Confidence 11234455555555444 123346788888776642 2366677776654 55577777777776665543 4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh----hhCCCCCCHHHH
Q 001797 661 PNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEM----PSRGVTPDNFVY 736 (1012)
Q Consensus 661 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~----~~~~~~pd~~~~ 736 (1012)
.+..+|..+...+.+..+++.|...|....... +.+...|..........|+.-++..+|..- ...|--|+..-|
T Consensus 848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw 926 (1238)
T KOG1127|consen 848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW 926 (1238)
T ss_pred cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence 467788888888999999999999999888763 335667766666667788888888888762 122334454444
Q ss_pred HHHHHHHHhcCCHHH----------HHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC-CCCCCHHHH
Q 001797 737 CTLVDGCCRDGNMEK----------ALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK-HITPNHVTY 805 (1012)
Q Consensus 737 ~~l~~~~~~~g~~~~----------A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~ 805 (1012)
..........|+.++ |--..++.....|+...+|...+......+.+.+|.+...+.+.- ...-+...|
T Consensus 927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqy 1006 (1238)
T KOG1127|consen 927 LCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQY 1006 (1238)
T ss_pred HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444444455666554 333455666677888899999999999999999998888776421 011233334
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCHH-HHHHHH
Q 001797 806 T----ILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER-GVEPDGV-IYSMMV 879 (1012)
Q Consensus 806 ~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~~~l~ 879 (1012)
+ .....++..|.++.|..-+...-. ..+..+-..-+ +..-.|+++++.+.|++++.- .-..|.. ....++
T Consensus 1007 nvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva 1082 (1238)
T KOG1127|consen 1007 NVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVA 1082 (1238)
T ss_pred hhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHH
Confidence 4 455566777888866654432211 11111111111 124578999999999999862 2222322 233445
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH---HHHHHHHH-HHhc
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA---TCCILISS-VYEA 955 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~ll~~-~~~~ 955 (1012)
.+....+..+.|...+-+..... +++......|...+.-..+-.....+.+++.. ...... ..-.++.. +..+
T Consensus 1083 ~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssaileel~k--l~k~e~~~~~~~ll~e~i~~~~ 1159 (1238)
T KOG1127|consen 1083 VCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAILEELEK--LLKLEWFCWPPGLLKELIYALQ 1159 (1238)
T ss_pred HHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHH--hhhhHHhccChhHHHHHHHHHh
Confidence 66677888899999988888875 67777777777776666665555555555543 111111 11123333 6788
Q ss_pred CCHHHHHHHHHHHHH
Q 001797 956 GNIDKATRFLESMIK 970 (1012)
Q Consensus 956 g~~~~A~~~~~~~~~ 970 (1012)
||-.-..+..++...
T Consensus 1160 ~r~~~vk~~~qr~~h 1174 (1238)
T KOG1127|consen 1160 GRSVAVKKQIQRAVH 1174 (1238)
T ss_pred hhhHHHHHHHHHHHh
Confidence 888888888888665
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=4.1e-09 Score=112.80 Aligned_cols=415 Identities=16% Similarity=0.159 Sum_probs=251.9
Q ss_pred cChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHH
Q 001797 257 GAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLK 336 (1012)
Q Consensus 257 g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (1012)
+++...+.+.+.++++ ......|.....--++..|+-++|......-.... ..+.+.|..++-.+....++++|+..+
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4455555555556553 22244555555555677899999999888877643 566788999998888889999999999
Q ss_pred HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 001797 337 NEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRN-LS 415 (1012)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~ 415 (1012)
..+...+ +.|...|.-|.-.-.+.|+++-....-.+..+.. +.....|.....++.-.|++..|..++++..+.. -.
T Consensus 99 ~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 99 RNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999876 5577778777777778889888888888877752 3356778888888889999999999999887765 24
Q ss_pred CChhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 001797 416 PTAYTCNVII------NGLCRCSDLEGACRVFEEMIACGLKPNNF-VYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDV 488 (1012)
Q Consensus 416 ~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 488 (1012)
|+...+.... ....+.|.+++|.+.+..-... ..|.. .--.-...+.+.+++++|..++..++... ||.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn 252 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDN 252 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chh
Confidence 5555544333 3345567888888777654332 12222 22345567788999999999999998874 566
Q ss_pred HHHHHHHH-HHHhCCCHHHHH-HHHHHHHHCCCC---CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 001797 489 FCYNSLIS-GLCKAKKMEDAR-SCLVEMTANGLK---PNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTT 563 (1012)
Q Consensus 489 ~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 563 (1012)
..|+.... ++.+-.+.-++. .+|....+.-.. |-....+. ..-..-.+....++..+++.|+++- +..
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~v---f~d 325 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSV---FKD 325 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCch---hhh
Confidence 66555444 443333444444 555555443111 11111111 1112223444556667777776543 333
Q ss_pred HHHHHHhcCChHHHHHHHHHHH--------hCC----------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001797 564 LIDGHCKEGNVKEAFSTFRCML--------GRG----------ILPDLKTYS--VLIHGLSRCGKIHEALEVFSELQDKG 623 (1012)
Q Consensus 564 li~~~~~~g~~~~A~~~~~~~~--------~~~----------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~ 623 (1012)
+...|-.....+ +++++. ..| -+|....|. .++..+-+.|+++.|..+++..++.
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH- 400 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH- 400 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-
Confidence 333332211111 222221 000 134444333 3455666677777777777766654
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001797 624 LVPDV-ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKG 693 (1012)
Q Consensus 624 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 693 (1012)
.|+. ..|..-.+.+...|++++|..++++..+.. .+|...-.--+....+.++.++|.++.......|
T Consensus 401 -TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 401 -TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred -CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 3332 334444566666777777777777766553 3343333244445556667777776666665554
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.6e-14 Score=152.41 Aligned_cols=259 Identities=19% Similarity=0.154 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 001797 599 LIHGLSRCGKIHEALEVFSELQDKG-LVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG 677 (1012)
Q Consensus 599 li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 677 (1012)
+...+.+.|++++|++++.+..... ...+...|..+.......++++.|+..++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 3445555555555555554433222 1123333333444444455555565555555554322 33334444444 4555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 678 ELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNFVYCTLVDGCCRDGNMEKALSLF 756 (1012)
Q Consensus 678 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~~~~~l~~~~~~~g~~~~A~~~~ 756 (1012)
++++|.+++.+..++. ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555544431 333444445555555555555555555544321 1234445555555555555555555555
Q ss_pred HHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001797 757 LEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN 836 (1012)
Q Consensus 757 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 836 (1012)
+++++..|.++.+...++..+...|+.+++.++++...+.. +.|+..+..++.++...|+.++|+.+|++..+. .+.|
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d 247 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDD 247 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cccc
Confidence 55555555555555555555555555555555555544431 333444445555555555555555555555442 2224
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHH
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEM 863 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 863 (1012)
+.....++.++...|+.++|..+..++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444445555555555555555554444
No 64
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.57 E-value=4.1e-10 Score=120.32 Aligned_cols=455 Identities=15% Similarity=0.131 Sum_probs=205.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 001797 501 AKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFST 580 (1012)
Q Consensus 501 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 580 (1012)
.+++...++..+.+.+. ..-...|.....-.++..|+.++|....+..+... ..+.+.|..++-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34444444444444442 11122233323333444455555555555544432 33445555555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 001797 581 FRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESG-I 659 (1012)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~ 659 (1012)
|..++..+ +.|...|.-+.-.-.+.++++.....-.++.+..+. ....|..++.++.-.|++..|..+.++..+.. .
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55555543 224445554444445555555555554444443211 33445555555555556666665555555442 1
Q ss_pred CCChhhHHHH------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC
Q 001797 660 TPNIVTYNAL------IDGLCKSGELERARELFDGIFAKGLTPTVVTY-TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD 732 (1012)
Q Consensus 660 ~~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd 732 (1012)
.|+...+... .....+.|..++|.+.+...... ..|...+ .+-...+.+.+++++|..++..++.. .||
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd 251 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD 251 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence 2333332211 11233455555555555443322 1122222 23344555666666666666666653 455
Q ss_pred HHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHcCCCchhhHHHHHHHHHhcCc-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 733 NFVYCTLVDGCC-RDGNMEKAL-SLFLEMVQKGLASTSSFNALLNGLCKSQK-IFEANKLLEDMADKHITPNHVTYTILI 809 (1012)
Q Consensus 733 ~~~~~~l~~~~~-~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~ 809 (1012)
..-|...+..+. +-.+.-++. .+|...-+..|....... +.-......+ .+...+++..++++|+++- +..+.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R-lplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR-LPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh-ccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhH
Confidence 554433333222 222333333 444444443332221111 1111111112 2223344455555554432 12222
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----CC----------CCCChHHHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCH-
Q 001797 810 DYHCKAGTMKDAEHLLVEMQK----RV----------LKPNFRTYT--SLLHGYAGIGKRSEMFALFDEMVERGVEPDG- 872 (1012)
Q Consensus 810 ~~~~~~g~~~~A~~~~~~~~~----~~----------~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 872 (1012)
..|-.....+--.++...+.. .| -+|....|+ .++.-+-..|+++.|..+++.++. ..|+.
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHH
Confidence 222111111111111111111 00 133333333 445556666777777777776663 44432
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC-----CHHHHHH
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL-----SHATCCI 947 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----~~~~~~~ 947 (1012)
+.|..-+..+...|+.++|..+++++.+.+ .+|..+-..-+.-..++++.++|.++.....+.|..- +....|.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf 484 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWF 484 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHH
Confidence 444445566666777777777777776665 2344333345566666677777777666665544210 1112222
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHH
Q 001797 948 LIS---SVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 948 ll~---~~~~~g~~~~A~~~~~~~~~ 970 (1012)
.+. +|.++|++.+|++-|..+-+
T Consensus 485 ~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 485 QLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 221 26666777666666655555
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=1.6e-10 Score=113.76 Aligned_cols=404 Identities=14% Similarity=0.133 Sum_probs=191.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 001797 430 RCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARS 509 (1012)
Q Consensus 430 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 509 (1012)
...++..|+.+++--...+-.-...+-.-+..++...|++++|...+.-+.+.. .++...+-.|..++.-.|.+.+|..
T Consensus 34 s~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred hcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 344555555555443322211111122223344445566666665555544422 2344444445544455555555555
Q ss_pred HHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 001797 510 CLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGI 589 (1012)
Q Consensus 510 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 589 (1012)
+-.+..+ ++.--..|.....+.++-++...+.+.+.+. ..--.+|.......-.+.+|++++.+.+..
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 4433211 2222223344445556665555555554431 122334444445555677777777777665
Q ss_pred CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 001797 590 LPDLKTYSVLI-HGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668 (1012)
Q Consensus 590 ~~~~~~~~~li-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.|+-...|..+ -+|.+..-++-+.++++-.+.. .+.++...+..+....+.=+-..|.+-...+...+-. . | .
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-~ 254 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-P 254 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-h
Confidence 34444555433 3556666677777777666654 2224445555544444432323333334444333211 1 1 1
Q ss_pred HHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 001797 669 LIDGLCKS-----GELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743 (1012)
Q Consensus 669 l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~ 743 (1012)
.+.-+++. .+-+.|++++-.+... -|. .-..|+--|.++++..+|..+.+++.- ..|-..+...+..+-
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Confidence 22233333 2346677777666653 232 223345557788889999888887653 234333333333221
Q ss_pred -----HhcCCHHHHHHHHHHHHHcCCCch--hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 001797 744 -----CRDGNMEKALSLFLEMVQKGLAST--SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAG 816 (1012)
Q Consensus 744 -----~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 816 (1012)
.......-|...|..+-+.+...+ .....++..+.-..++++.+..++.+...-. .|...-..++.+++..|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~-NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT-NDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhHHHHHHHHhc
Confidence 111123345555544433333221 3344455555555556666665555544322 22222234555566666
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChhHHHHHH
Q 001797 817 TMKDAEHLLVEMQKRVLKPNFRTYT-SLLHGYAGIGKRSEMFALF 860 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~ 860 (1012)
++.+|+++|-++....++ |..+|. .|.++|.+.+.++-|++++
T Consensus 408 ny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred ChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 666666665544321111 223333 3445555555555554443
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.6e-11 Score=119.77 Aligned_cols=290 Identities=14% Similarity=0.167 Sum_probs=215.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHH
Q 001797 606 CGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPN---IVTYNALIDGLCKSGELERA 682 (1012)
Q Consensus 606 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 682 (1012)
..+.++|.++|-+|.+.... +..+..+|.+.|.+.|..+.|+.+++.+.++.--+. ......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 56778888888888875332 556667788888889999999999998887521111 23455677788899999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 683 RELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF----VYCTLVDGCCRDGNMEKALSLFLE 758 (1012)
Q Consensus 683 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~----~~~~l~~~~~~~g~~~~A~~~~~~ 758 (1012)
.++|..+.+.+. --......|+..|-...+|++|++.-+++.+.+-.+..+ .|.-+...+....+.+.|..++++
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999987532 234566778899999999999999999888765554433 467777777778899999999999
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR 838 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 838 (1012)
+.+.+|....+-..+++.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+....++
T Consensus 206 Alqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-- 283 (389)
T COG2956 206 ALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-- 283 (389)
T ss_pred HHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--
Confidence 999999999888899999999999999999999998864333445677888899999999999999988887433333
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHc
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK---EGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 901 (1012)
.-..+...-....-.++|..++.+-+. -.|+...+..+++.... .|...+...+++.|...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 333444443444445666666666554 57888777777765432 34566666777777655
No 67
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=2.4e-11 Score=122.59 Aligned_cols=288 Identities=11% Similarity=0.134 Sum_probs=235.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 676 SGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSL 755 (1012)
Q Consensus 676 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~ 755 (1012)
.|++.+|+++..+-.+.+-.| ...|..-+.+--+.|+.+.+-.++.+..+..-.++.....+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 689999999998877765443 4456666677778999999999999988753344555677777788889999999999
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV-------TYTILIDYHCKAGTMKDAEHLLVEM 828 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~ 828 (1012)
...+.+..|.++.+.....++|.+.|++.+...++.++.+.+.-.+.. +|..+++-....+..+.-...|+..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 999999999999999999999999999999999999999988766554 5666666555555555555566665
Q ss_pred HHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHH
Q 001797 829 QKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQN 908 (1012)
Q Consensus 829 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 908 (1012)
... ..-++..-.+++.-+...|+.++|.++..+.++.+.+|. ...++ ...+-++.+.=++..++..+.. |.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 543 445666777888889999999999999999998777766 22222 3457788888899999988885 77889
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 972 (1012)
.+.+|+..|.+++.|.+|.+.++.+++ ..|+..++.++...|.+.|+.++|..+++..+..-
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999988 78999999999999999999999999999887543
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.8e-10 Score=115.87 Aligned_cols=296 Identities=13% Similarity=0.062 Sum_probs=230.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCH
Q 001797 637 GFCKQGFIKEAFQLHEKMCES-GITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVT-YTTIIDGYCKSGNL 714 (1012)
Q Consensus 637 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~ 714 (1012)
+.+-.++...|.+.+-.+... -++.|+.....+...+...|+.++|...|++.... .|+..+ .....-.+.+.|++
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 344556666666655544433 35667888899999999999999999999988864 343322 22233445688999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 001797 715 TEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMA 794 (1012)
Q Consensus 715 ~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 794 (1012)
++...+...+... ..-....|..-+.......+++.|+.+-++.++.++.+..++..-+..+...|+.++|.-.|+...
T Consensus 283 e~~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 283 EQDSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhHHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 9999988888764 122333454445555677899999999999999999999999999999999999999999999987
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH-HHHHc-cCChhHHHHHHHHHHHcCCCCC
Q 001797 795 DKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLL-HGYAG-IGKRSEMFALFDEMVERGVEPD 871 (1012)
Q Consensus 795 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~ 871 (1012)
. +.| +...|..|+..|...|.+.||.-+.+...+. ++.+..+...++ ..|.. ..--++|.+++++.+. +.|+
T Consensus 362 ~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~ 436 (564)
T KOG1174|consen 362 M--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPI 436 (564)
T ss_pred h--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCc
Confidence 6 454 6789999999999999999999988877653 445666666553 33332 3345789999998885 7776
Q ss_pred H-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 872 G-VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 872 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
. .....++..+...|++++++.++++.+..- +|....+.|++.+...+.+++|...|..++. ++|++..
T Consensus 437 Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~ 506 (564)
T KOG1174|consen 437 YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF--PDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKR 506 (564)
T ss_pred cHHHHHHHHHHHHhhCccchHHHHHHHHHhhc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchH
Confidence 4 455677789999999999999999999884 7999999999999999999999999999998 7887653
No 69
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.53 E-value=7.9e-09 Score=111.00 Aligned_cols=380 Identities=19% Similarity=0.196 Sum_probs=205.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 532 EYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHE 611 (1012)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 611 (1012)
.+...|+++.|...|-+... ....+.+......+.+|+.+++.+.++.. -..-|..+.+-|...|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHH
Confidence 34455666666655544321 12234455556677777777776665522 23345566667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 612 ALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 612 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
|.++|.+.- .++-.|..|.+.|++++|.++-++.. |.+.....|..-..-+-+.|++.+|.++|-.+.
T Consensus 784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 777775422 23445667777777777777666543 333344455555555666777777777665443
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHH
Q 001797 692 KGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFN 771 (1012)
Q Consensus 692 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 771 (1012)
.|+. .|..|-+.|..++.+++.++-.... -..|...+..-+...|+...|.+.|-++-+ |.
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~k 912 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FK 912 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HH
Confidence 2443 3556777777777777776643211 112455556666667777777766655432 44
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhC------------CCCCCHH--------HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMADK------------HITPNHV--------TYTILIDYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
.-+++|-..+-|++|.++-+.--.. .+..+.. ....-++.-+..+-++-|..+-+-..+.
T Consensus 913 aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~ 992 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD 992 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc
Confidence 5556666666666666554321100 0000000 0111122223334444444443333221
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcC-ChHHHHHHH---------H
Q 001797 832 VLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMV-----DAYLKEG-NMMKTIKLV---------D 896 (1012)
Q Consensus 832 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-----~~~~~~g-~~~~A~~~~---------~ 896 (1012)
-.| .....+...+...|++++|-+.|-++++. ..-..+|...+ .-+.+.| +.++|..+| +
T Consensus 993 -k~~--~vhlk~a~~ledegk~edaskhyveaikl--ntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~ae 1067 (1636)
T KOG3616|consen 993 -KMG--EVHLKLAMFLEDEGKFEDASKHYVEAIKL--NTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAE 1067 (1636)
T ss_pred -cCc--cchhHHhhhhhhccchhhhhHhhHHHhhc--ccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHH
Confidence 112 23344555667889999998888888752 21112222111 1123333 444444443 1
Q ss_pred HHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 897 EMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLES 967 (1012)
Q Consensus 897 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 967 (1012)
+..+...+ .-+.++..-++.-...|++.+|+.++.++. +|+ ..++.|.+.+-|.+|+++.+.
T Consensus 1068 rvae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran----kp~-----i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1068 RVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN----KPD-----IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC----CCc-----hHHHHHHHhccChHHHHHHHh
Confidence 22222222 124567777778888899999998887663 466 334456677888888776553
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=8.7e-11 Score=118.69 Aligned_cols=291 Identities=14% Similarity=0.128 Sum_probs=200.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 536 TGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEV 615 (1012)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 615 (1012)
.|++..|+++..+..+.+ +.....|..-+.+--..|+.+.+-..+.++.+....++...+-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555555554443 2223344444445555566666666666555543333444455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 616 FSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI-------VTYNALIDGLCKSGELERARELFDG 688 (1012)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (1012)
+.++.+.++. .+........+|.+.|++.....++..+.+.+.-.+. .+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665443 4455566666666666666666666666666554442 2455666655555556665667776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh
Q 001797 689 IFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS 768 (1012)
Q Consensus 689 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 768 (1012)
...+ .+.+...-.+++.-+.+.|+.++|.++.++..+.+..|.. .. .-.+.+.++.+.-++..++.++..|+++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 6554 3335556667788889999999999999999988777662 22 22456778888889999999999999999
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 769 SFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835 (1012)
Q Consensus 769 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 835 (1012)
.+..|+..|.+.+.|.+|.+.|+..++ ..|+..+|+.+.+++.+.|+.++|.+..++.+..-.+|
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999998887 57899999999999999999999999998876533333
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=4.3e-11 Score=116.75 Aligned_cols=288 Identities=15% Similarity=0.149 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHHHHH
Q 001797 677 GELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN---FVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~---~~~~~l~~~~~~~g~~~~A~ 753 (1012)
++.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..|.|+.+.+.+.++---+.. .....|..-|...|-+++|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34555555555555431 112233344555555555555555555555432111110 12333444455556666666
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV----TYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.+|..+.+.+--...+...|+.+|-...+|++|++.-+++.+.+..+..+ .|.-|...+....+.+.|..++.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 66666555444444555666666666666666666666665543333221 34444444555566666666666666
Q ss_pred HCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHH
Q 001797 830 KRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNV 909 (1012)
Q Consensus 830 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 909 (1012)
+.. +.....-..+++.....|+++.|++.++.+.+.+..--+.+...|..+|...|+.++...++.++.+.. +....
T Consensus 208 qa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~ 284 (389)
T COG2956 208 QAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADA 284 (389)
T ss_pred hhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccH
Confidence 531 223334445566666677777777777766653322234555566667777777777777777666654 34444
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 001797 910 YTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV---YEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 910 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~---~~~g~~~~A~~~~~~~~~ 970 (1012)
-..+........-.+.|...+.+-+. -+|+.-..+-++..- ...|++.+....+.+|..
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44555444444444455444444333 256666666666552 244556666666666654
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=4.4e-12 Score=123.23 Aligned_cols=235 Identities=9% Similarity=-0.010 Sum_probs=197.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc
Q 001797 701 YTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKS 780 (1012)
Q Consensus 701 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 780 (1012)
-+.+..+|.+.|.+.+|.+.++...+. .|-..||..|-.+|.+..+...|+.++.+.++..|.+.......++++...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 356778888888888888888887774 555667778888888888888888888888888888877778888888889
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHH
Q 001797 781 QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALF 860 (1012)
Q Consensus 781 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 860 (1012)
++.++|.++|+...+.. +.+.+...++...|.-.++.+-|+.+|+++++.|. .++..|+.++-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 99999999999988752 34566777777888889999999999999999875 47788999999999999999999999
Q ss_pred HHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCC
Q 001797 861 DEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEI 938 (1012)
Q Consensus 861 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 938 (1012)
..++..-..|+ ..+|++++......|++.-|.+.|+-++..+ +.+...++.|+-.-.+.|++++|..++..+.. .
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s--~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS--V 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh--h
Confidence 99987544454 4789999999999999999999999999886 66789999999999999999999999998876 5
Q ss_pred CCCH
Q 001797 939 KLSH 942 (1012)
Q Consensus 939 ~p~~ 942 (1012)
.|+-
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 6653
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=4.1e-11 Score=138.42 Aligned_cols=247 Identities=15% Similarity=0.087 Sum_probs=169.4
Q ss_pred HHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH
Q 001797 714 LTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCC---------RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI 783 (1012)
Q Consensus 714 ~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 783 (1012)
+++|..++++.++. .|+. ..|..+..++. ..+++++|...++++++.+|.+..++..++.++...|++
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 45666666666653 4433 23444443332 234578888888888888888888888888888888899
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChhHHHHHHHH
Q 001797 784 FEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF-RTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 784 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
++|...++++++.+ +.+...+..++..+...|++++|+..++++.+. .|+. ..+..++..+...|++++|...+++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999998888742 334567778888888889999999999888863 4433 2333445556678888999998888
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhC-CCCC
Q 001797 863 MVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK-EIKL 940 (1012)
Q Consensus 863 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p 940 (1012)
+++.. .| ++..+..++.+|...|++++|...++++.... +.+......++..|+..|+ +|...++++.+. +..|
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRID 507 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhh
Confidence 87532 34 44556777888888999999999988876663 4456667777777888774 777767766542 1223
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 941 SHATCCILISSVYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 941 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g 972 (1012)
.++.. .-.-+.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 22222 22225566777777777 7777654
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=4.5e-11 Score=138.10 Aligned_cols=216 Identities=13% Similarity=0.067 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc---------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 747 GNMEKALSLFLEMVQKGLASTSSFNALLNGLCKS---------QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGT 817 (1012)
Q Consensus 747 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 817 (1012)
+++++|+..|+++++.+|....++..++.+|... +++++|...++++++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 3568999999999999999998888888776533 45899999999999852 3367788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 001797 818 MKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG-VIYSMMVDAYLKEGNMMKTIKLVD 896 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 896 (1012)
+++|+..|+++.+.+ +.+...+..++..+...|++++|...++++++ +.|+. ..+..++..+...|++++|+..++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999852 33566888899999999999999999999997 56643 334445556777899999999999
Q ss_pred HHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 897 EMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 897 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
+++....|.++..+..++.++...|++++|...+.++.. ..|+.......+.. |...| ++|...++.+++
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998875345677889999999999999999999999876 46776666666655 56666 588888888777
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.7e-10 Score=118.89 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=52.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
+..++..+...|++++|.+.++++++....| ....+..++.++...|++++|...++++.... |.+...+..++.++.
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 180 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHH
Confidence 3333444444444444444444443311111 22333344444444455555555554444443 233444444455555
Q ss_pred ccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 001797 919 KEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESM 968 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~ 968 (1012)
..|++++|.+.++++.+. .|+++...+.... +...|+.++|..+.+.+
T Consensus 181 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 555555555555544442 2333222222222 33445555555444443
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=1.3e-10 Score=119.79 Aligned_cols=200 Identities=10% Similarity=0.029 Sum_probs=174.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 732 DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDY 811 (1012)
Q Consensus 732 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 811 (1012)
....+..+...+...|++++|.+.++++++..|.....+..++..|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345788888999999999999999999999999888999999999999999999999999998853 4456788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChH
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMM 889 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 889 (1012)
+...|++++|...++++......+ ....+..++..+...|++++|...+.++++. .| +...+..++..+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 999999999999999998743222 4456778889999999999999999999873 44 5677888999999999999
Q ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 890 KTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 890 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+|...++++.... +.++..+..++..+...|+.++|..+.+.+..
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999883 66788888899999999999999999888765
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.8e-08 Score=98.23 Aligned_cols=398 Identities=14% Similarity=0.066 Sum_probs=260.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 557 NDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRC-GKIHEALEVFSELQDKGLVPDVITYSSLI 635 (1012)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li 635 (1012)
+...-...+.+|-..++-++|+.......... .....+.++.-+.+. ++-.++.--+.+.+..- + .... .|
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrec-p---~aL~-~i 167 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIREC-P---MALQ-VI 167 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhc-c---hHHH-HH
Confidence 34444556777778888888887766554331 112233333333332 33223333333333221 1 1111 11
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 001797 636 SGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALID--GLCKSGELERARELFDGIFAK-GLTPTVVTYTTIIDGYCKSG 712 (1012)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g 712 (1012)
.+..+.+ +..+...-..|.....+|+..+...-+. +.+-.++...|...+-.+... -++-|+.....+.+.+...|
T Consensus 168 ~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G 246 (564)
T KOG1174|consen 168 EALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG 246 (564)
T ss_pred HHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc
Confidence 2222211 0011111112222233444333333333 344455555555555444433 35557778889999999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHH
Q 001797 713 NLTEAFQLVNEMPSRGVTPDNFV-YCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLE 791 (1012)
Q Consensus 713 ~~~~A~~l~~~~~~~~~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 791 (1012)
+.++|+..|++... +.|+..+ .....-.+.+.|++++-..+...+..........|..-+......++++.|+.+-+
T Consensus 247 dn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~e 324 (564)
T KOG1174|consen 247 DYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVE 324 (564)
T ss_pred CchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999876 4565543 22233345678899998888888887765555667777777788899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 001797 792 DMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP 870 (1012)
Q Consensus 792 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 870 (1012)
+.++.. +.+...|..-...+...|+.++|.-.|+.++. +.| +...|..|+++|...|++.||.-..+..... +..
T Consensus 325 K~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~ 400 (564)
T KOG1174|consen 325 KCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN 400 (564)
T ss_pred HHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence 988742 23455666666778899999999999999886 454 7789999999999999999999888877752 333
Q ss_pred CHHHHHHHH-HHH-HhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 871 DGVIYSMMV-DAY-LKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 871 ~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
+..+...++ ..+ ....-.++|.+++++.+... |.-..+-+.++..+...|.++++++++++.+. ..|+..-...+
T Consensus 401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~L 477 (564)
T KOG1174|consen 401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHL 477 (564)
T ss_pred chhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHH
Confidence 555554443 222 33445789999999999886 43456677888999999999999999999987 67776665555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 949 ISSVYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 949 l~~~~~~g~~~~A~~~~~~~~~~g 972 (1012)
..-+..++.+.+|...|...++..
T Consensus 478 gd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 478 GDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC
Confidence 555888999999999999988854
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=6e-08 Score=102.99 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=107.3
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHH
Q 001797 711 SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC--CRDGNMEKALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 787 (1012)
.+..+.+.++...... ..|... +..++..+ ++......+.+++....+..|... .+...++.....+|+++.|+
T Consensus 320 tnk~~q~r~~~a~lp~--~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPG--MSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred hhhHHHHHHHHHhCCc--cCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555555555443 233333 23333332 222246677777777777777664 67777888888888888888
Q ss_pred HHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChHHHHH----HHHHHHccCCh
Q 001797 788 KLLE--------DMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKR--VLKPNFRTYTS----LLHGYAGIGKR 853 (1012)
Q Consensus 788 ~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~----l~~~~~~~g~~ 853 (1012)
+++. .+.+.+..|..+ ..+...+.+.++.+-|..++.+.... ...+....... ++..-.+.|+-
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 8888 555544444444 45555666777666666666665431 11222222232 33333456888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 001797 854 SEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEM 898 (1012)
Q Consensus 854 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 898 (1012)
++|..+++++++. ..+|..+...++.+|+.. +.+.|..+-+.+
T Consensus 475 ~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 475 EEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 8888888888863 234677777777777665 567777665544
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=9e-08 Score=104.62 Aligned_cols=562 Identities=14% Similarity=0.125 Sum_probs=290.6
Q ss_pred CCHhHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C--------C
Q 001797 311 PNEVVYTTLING--FMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRL-G--------I 379 (1012)
Q Consensus 311 ~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~ 379 (1012)
-|..|--.+++. |...|++++|.+-.+-.. +...|..|..++.+..++|-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 466677666654 667889999888777655 4467888888888888888888777766532 1 0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTL 459 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 459 (1012)
.|+ .+=....-.....|.+++|..+|++.+..+ .|-..|-..|.+++|.++-+.=-... -..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 111112222345566666666666655432 23344555666666666654322111 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCH
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM 539 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 539 (1012)
..-+-..++.+.|++.|++.... --.....|. .+......+.+.+ .|...|.-....+-..|++
T Consensus 865 A~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccch
Confidence 55555566666666666643211 111111110 0111111111111 1334444455555567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 540 QAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL 619 (1012)
Q Consensus 540 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 619 (1012)
+.|+.+|....+ |-+++...|-.|+.++|-++-++- .|......|.+.|-..|++.+|...|.+.
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 888888877654 566777777888888887775542 25566667788888888888888888765
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHH----------------HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001797 620 QDKGLVPDVITYSSLISGFCKQGFIKE----------------AFQLHEKMCESGITPNIVTYNALIDGLCKSGELERAR 683 (1012)
Q Consensus 620 ~~~~~~~~~~~~~~li~~~~~~g~~~~----------------A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 683 (1012)
.. +...|+. |+.+++++ |-..|++. |.. ...-+..|-+.|.+.+|+
T Consensus 994 qa---------fsnAIRl-cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 994 QA---------FSNAIRL-CKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HH---------HHHHHHH-HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHH
Confidence 53 2233332 22222222 22222221 100 112233455666666665
Q ss_pred HHHHH--------HHhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 684 ELFDG--------IFAKG--LTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 684 ~~~~~--------~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~ 753 (1012)
++--+ ++.+. ...|....+.-.+.++...++++|..++-...+ |...+..| +..+..--.
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC-~~~nv~vte 1125 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLC-KNRNVRVTE 1125 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHH-hcCCCchhH
Confidence 54221 11121 223445555566667777777777777665543 22223333 333333333
Q ss_pred HHHHHHHHc--C-CCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH------
Q 001797 754 SLFLEMVQK--G-LAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDA------ 821 (1012)
Q Consensus 754 ~~~~~~~~~--~-~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A------ 821 (1012)
++-+.|.-. + |+.. ..+..++..+.++|.+..|.+-|.+.-++ ...+.++.+.|+.++-
T Consensus 1126 e~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~ 1196 (1416)
T KOG3617|consen 1126 EFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANT 1196 (1416)
T ss_pred HHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeec
Confidence 444433211 1 1111 56677888888999988888877765332 1334555666665432
Q ss_pred ----------HHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 001797 822 ----------EHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKT 891 (1012)
Q Consensus 822 ----------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 891 (1012)
-.+++.+ ....++.+...++..|-+..-++---.+|..... + ..+.+..+..+ .|-.++|
T Consensus 1197 sRqkEiYImAANyLQtl---DWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAq--i--Eiee~q~ydKa---~gAl~eA 1266 (1416)
T KOG3617|consen 1197 SRQKEIYIMAANYLQTL---DWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQ--I--EIEELQTYDKA---MGALEEA 1266 (1416)
T ss_pred cccceeeeehhhhhhhc---ccccChHHHhhhHhhhhcchhHHHHHHHHHHHHH--h--hHHHHhhhhHH---hHHHHHH
Confidence 2222221 2344555554444444443333333333333221 1 11122222221 2344555
Q ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHhcc-----------ccHHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHhcC
Q 001797 892 IKLVDEMFLRGLVLNQNVYTSLANSLCKE-----------EEFYKVLKLLDEMGDKEIKLSHA----TCCILISSVYEAG 956 (1012)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~g~~p~~~----~~~~ll~~~~~~g 956 (1012)
.+.+.++..++ .....+..|-.-..+- .+..+.++...-|++.-..|+.. .+-.++..+....
T Consensus 1267 ~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k 1344 (1416)
T KOG3617|consen 1267 AKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRK 1344 (1416)
T ss_pred HHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhh
Confidence 55555555543 2233333332221111 24555555555565432222221 3334566678889
Q ss_pred CHHHHHHHHHHHHHC
Q 001797 957 NIDKATRFLESMIKF 971 (1012)
Q Consensus 957 ~~~~A~~~~~~~~~~ 971 (1012)
+|..|.+.++.|.+.
T Consensus 1345 ~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1345 NYKPAYRALTELQKK 1359 (1416)
T ss_pred hccHHHHHHHHHhhc
Confidence 999999999999884
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.34 E-value=7.2e-10 Score=121.06 Aligned_cols=234 Identities=19% Similarity=0.179 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhC-----C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCch
Q 001797 700 TYTTIIDGYCKSGNLTEAFQLVNEMPSR-----G-VTPDNFV-YCTLVDGCCRDGNMEKALSLFLEMVQK-----GLAST 767 (1012)
Q Consensus 700 ~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~-~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 767 (1012)
+...+...|...|++++|+.+++..++. | ..|...+ .+.+...|...+++.+|..+|++++.. |...+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333555555556666555555554432 1 0122221 223445555556666666666655432 22222
Q ss_pred ---hhHHHHHHHHHhcCcHHHHHHHHHHHHhC-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC
Q 001797 768 ---SSFNALLNGLCKSQKIFEANKLLEDMADK-----HIT-PNH-VTYTILIDYHCKAGTMKDAEHLLVEMQKR---VLK 834 (1012)
Q Consensus 768 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 834 (1012)
.+++.|+..|++.|++++|..++++..+- +.. |.. ..++.++..++..+++++|..++++..+. -..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 44555555555555555555555444320 111 111 13444555555566666666665554331 111
Q ss_pred CCh----HHHHHHHHHHHccCChhHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 001797 835 PNF----RTYTSLLHGYAGIGKRSEMFALFDEMVER-----G-VEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-- 901 (1012)
Q Consensus 835 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 901 (1012)
++. .+++.|...|..+|++++|.+++++++.. + ..+ ....++.|+..|.+.+++++|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 211 24555555555556666665555555531 0 111 1233445555555555555555555443322
Q ss_pred --C--CccCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 001797 902 --G--LVLNQNVYTSLANSLCKEEEFYKVLKLLDEM 933 (1012)
Q Consensus 902 --~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 933 (1012)
| .|....+|..|+..|...|++++|+++.+.+
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1 1112344555555555555555555554444
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=3.2e-10 Score=110.51 Aligned_cols=229 Identities=17% Similarity=0.099 Sum_probs=157.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 562 TTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQ 641 (1012)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 641 (1012)
+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|...|.+..++..|+.++.+-++.- +-|+....-+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 45667777777777777777777765 4556667777777777777777777777776652 22444445566667777
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 001797 642 GFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLV 721 (1012)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 721 (1012)
++.++|.++++...+.. +.++.....+...|.-.++.+-|+.+|.++++.|+. +...|+.+.-+|.-.+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 77777777777777653 345666666666777777777777777777777655 5566666666666777777777777
Q ss_pred HHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 722 NEMPSRGVTPDNF--VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 722 ~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
++....--.|+.. +|..+.......|++..|...|+-++..+++...+++.|+-.-.+.|++++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7766543344433 5666666666777777777777777777777777777777777777777777777776654
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.33 E-value=6.7e-10 Score=121.32 Aligned_cols=237 Identities=20% Similarity=0.178 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C---CCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC-----C-CC
Q 001797 734 FVYCTLVDGCCRDGNMEKALSLFLEMVQK-----G---LASTSSFNALLNGLCKSQKIFEANKLLEDMADK-----H-IT 799 (1012)
Q Consensus 734 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 799 (1012)
.+...+...|...|+++.|..+++.+++. | +.-....+.++..|...+++.+|..+|++++.- | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36667899999999999999999999876 2 222256667999999999999999999998752 1 11
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C--C-CCCChH-HHHHHHHHHHccCChhHHHHHHHHHHHc---CC
Q 001797 800 PN-HVTYTILIDYHCKAGTMKDAEHLLVEMQK---R--V-LKPNFR-TYTSLLHGYAGIGKRSEMFALFDEMVER---GV 868 (1012)
Q Consensus 800 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~-~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 868 (1012)
|. ..+++.|..+|.+.|++++|..+++++.+ . + ..|... .++.++..++..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 21 24788899999999999999999988754 1 1 222222 4567788899999999999999988761 12
Q ss_pred CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CccCHHHHHHHHHHHhccccHHHHHHHHHHHhh--
Q 001797 869 EPD----GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG-------LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD-- 935 (1012)
Q Consensus 869 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 935 (1012)
.++ ..++..|+..|...|++++|.+++++++.+. .......++.|+..|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 232 3678899999999999999999999998863 122356788899999999999999998888532
Q ss_pred CCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 936 KEIKLSHAT----CCILISSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 936 ~g~~p~~~~----~~~ll~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
+.+.|+.++ +..|...|..+|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 113454433 33344448899999999999999886
No 83
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=3.9e-07 Score=99.83 Aligned_cols=257 Identities=12% Similarity=0.079 Sum_probs=149.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHH
Q 001797 201 LLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFT 280 (1012)
Q Consensus 201 l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 280 (1012)
|+..|+.+.|.+-.+-+. +...|..|.+.|.+..+++-|.-.+..|..- ...+.+++..+.|-. +.
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~a-----RgaRAlR~a~q~~~e-~e-- 803 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNA-----RGARALRRAQQNGEE-DE-- 803 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhh-----hhHHHHHHHHhCCcc-hh--
Confidence 334455555554444332 3345666666666666666666655555432 112222333333221 11
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICK 360 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (1012)
......-...|.+++|+.+|.+... |..|=..|-..|.+++|+++-+.--+. .=..||..-..-+-.
T Consensus 804 -akvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 804 -AKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEA 870 (1416)
T ss_pred -hHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHh
Confidence 1111222356888899888888765 334555566788888888877653332 223456555555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001797 361 AGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRV 440 (1012)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 440 (1012)
.++.+.|++.|++.-. |--..+..|. .++.....+.+++ .|...|.--...+-..|+.+.|+.+
T Consensus 871 r~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred hccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHH
Confidence 7888888888887431 1111111111 1111222222222 2445566666666778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 001797 441 FEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMT 515 (1012)
Q Consensus 441 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 515 (1012)
|..... |.++++..|-+|+.++|-++-++-. |......|...|-..|++.+|...|.+..
T Consensus 935 Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 935 YSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 877653 6677888888888888888876543 55666678888888888888888887654
No 84
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.1e-07 Score=100.97 Aligned_cols=452 Identities=15% Similarity=0.134 Sum_probs=222.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHH--HHHHH--h
Q 001797 285 VDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNAL--IGGIC--K 360 (1012)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--i~~~~--~ 360 (1012)
++.+.+.|++++|.+...+++..+ +.+...+..-+.++.+.++|++|+.+.+.-.. ..+++.. =.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHH
Confidence 455667888888888888888765 66677788888888888888888855543221 1122222 33444 7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHH
Q 001797 361 AGEIEKAKGLMTEMLRLGINPDT-QTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYT--CNVIINGLCRCSDLEGA 437 (1012)
Q Consensus 361 ~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A 437 (1012)
.++.|+|...++ |+.++. .+...-...+.+.|++++|+++|+.+.+.+ .++... -..++.. + .+
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~----~---a~ 158 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAV----A---AA 158 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH----H---Hh
Confidence 888888888887 333433 355555677788888888888888888776 232211 1111111 0 01
Q ss_pred HHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHhhhCC-------CCC--CH-----HHHHHHHHHHHh
Q 001797 438 CRVFEEMIACGLKPNNFVYT---TLIQAHLRQNRFEEAINILKGMTGKG-------VLP--DV-----FCYNSLISGLCK 500 (1012)
Q Consensus 438 ~~~~~~~~~~g~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~--~~-----~~~~~li~~~~~ 500 (1012)
... ..+......|+ .+|. .....++..|++.+|+++++.....+ -.. +. ..--.|...+..
T Consensus 159 l~~-~~~q~v~~v~e-~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVPE-DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 01222112222 2222 23344556788888888887763211 000 00 011223344556
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchhh----HHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 001797 501 AKKMEDARSCLVEMTANGLKPNLYT----YGAFIREYTKTGNMQ--AADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNV 574 (1012)
Q Consensus 501 ~g~~~~A~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 574 (1012)
.|+.++|..++...+...+. |... -|.|+.. ..-.++- .++..++.... ...
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~--------------------~l~ 294 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVF--------------------KLA 294 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHH--------------------HhH
Confidence 77777777777777766433 3321 1122111 1111110 01111111100 000
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 001797 575 KEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGF-CKQGFIKEAFQLHEK 653 (1012)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 653 (1012)
+.....+..-... ....-+.++..| .+..+.+.++...+... .|....-+.+..+. ++...+..+..++..
T Consensus 295 ~~~l~~Ls~~qk~----~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 295 EFLLSKLSKKQKQ----AIYRNNALLALF--TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHH--hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1111111110000 111112222222 23334444444333222 22222222222221 222245666666666
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 001797 654 MCESGITPNIVTYNALIDGLCKSGELERARELFD--------GIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMP 725 (1012)
Q Consensus 654 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 725 (1012)
.-+........+...++......|+++.|.+++. .+.+.+..|..+. .+...+.+.++-+.|..++.+.+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHH
Confidence 5554333334455556666666777777777666 5554444454433 34455555555554555544433
Q ss_pred hC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHH
Q 001797 726 SR--GVTPD----NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLE 791 (1012)
Q Consensus 726 ~~--~~~pd----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 791 (1012)
.. .-.+. ..++..++..-.+.|+.++|..+++++.+.+|.+..+...++.+|++. +.+.|..+-.
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 21 00111 113333333444567777777777777777777777777777777654 4555554433
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=9.8e-10 Score=102.80 Aligned_cols=204 Identities=9% Similarity=-0.021 Sum_probs=127.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK 814 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 814 (1012)
+...|.-+|...|++..|..-++++++.+|....++..++..|.+.|..+.|.+.|++.+... +.+....|+....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 345556666777777777777777777777766777777777777777777777777766631 2234456666666677
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 001797 815 AGTMKDAEHLLVEMQKRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
.|++++|...|++......-+ -..+|..++.+..+.|+.+.|.+.|++.++ ..| .+.....+.....+.|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHH
Confidence 777777777776666532222 233566666666666777777777766665 333 3344555666666667777777
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 893 KLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+++.....+ +++.......+.+-...|+-+.|.++=.++.+ ..|....
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e 242 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEE 242 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHH
Confidence 6666666665 35666666666666666666666666655555 4454443
No 86
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.5e-08 Score=103.96 Aligned_cols=439 Identities=16% Similarity=0.104 Sum_probs=264.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCc-hhhHHHHHHHHHhcCC
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPN-LYTYGAFIREYTKTGN 538 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~ 538 (1012)
.++.+..|+++.|+..|.+.+...+. +.+.|+.-..+|...|++++|++--.+-.+. .|+ .-.|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 34566788888888888887776654 7778888888888888888887766665553 343 4467777777777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 001797 539 MQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCG-KIHEALEVFS 617 (1012)
Q Consensus 539 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~ 617 (1012)
+++|..-|.+-++.. +.|...++.+.+++. .+.+. +. ...++..|..+..--...+ ..+.+....-
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 888888888887764 556666777766661 11111 10 0112233322221100000 0111111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-----HHHHCC-------CCCChhhHHHHHHHHHhcCC-HHHHHH
Q 001797 618 ELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHE-----KMCESG-------ITPNIVTYNALIDGLCKSGE-LERARE 684 (1012)
Q Consensus 618 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-----~~~~~~-------~~~~~~~~~~l~~~~~~~g~-~~~A~~ 684 (1012)
+....+ |+. +..+..-.....|...+. .+...+ ..|.. ......-..++ .++..
T Consensus 153 ~~~~~~--p~~------l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~d~~ee~~- 219 (539)
T KOG0548|consen 153 EIIQKN--PTS------LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCK----QEHNGFPIIEDNTEERR- 219 (539)
T ss_pred HHhhcC--cHh------hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCccc----ccCCCCCccchhHHHHH-
Confidence 111111 111 001111000111111100 000011 11110 00000000000 00000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 685 LFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764 (1012)
Q Consensus 685 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 764 (1012)
. ..-..-...+.+...+..+++.|++.+....+.. .+..-++....+|...|.+.+.+......++.|.
T Consensus 220 -----~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr 288 (539)
T KOG0548|consen 220 -----V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR 288 (539)
T ss_pred -----H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH
Confidence 0 0011223456666667778888888888877642 3444456666678888888888888887777776
Q ss_pred CchhhHH-------HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 765 ASTSSFN-------ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837 (1012)
Q Consensus 765 ~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 837 (1012)
....-++ .++..|.+.++++.++..|.+.+.....|+.. .+....+++........- +.|..
T Consensus 289 e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~ 357 (539)
T KOG0548|consen 289 ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEK 357 (539)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhH
Confidence 5443333 35556777888999999999987755444332 233445556655544432 33433
Q ss_pred H-HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 001797 838 R-TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLAN 915 (1012)
Q Consensus 838 ~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 915 (1012)
. -...-++.+.+.|++.+|+..|.+++.. .| |...|.+.+-+|.+.|.+..|++-.+..++.. |+....|..-+.
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 2 2233478889999999999999999984 35 77889999999999999999999999999997 667888999999
Q ss_pred HHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 001797 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYE 954 (1012)
Q Consensus 916 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 954 (1012)
++....+|++|.+.|.+.++ ..|++.-+...+..+..
T Consensus 435 al~~mk~ydkAleay~eale--~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 435 ALRAMKEYDKALEAYQEALE--LDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHH
Confidence 99999999999999999988 67887777666666444
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.28 E-value=8.5e-09 Score=114.48 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=65.1
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcc
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 920 (1012)
.+...|...|++++|+++++++++ ..|+ ++.|..-+..|-..|++.+|.+.++.+...+ ..|..+-...+..+.++
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHC
Confidence 344445555666666666666554 3342 4455555556666666666666666665554 23444444455555566
Q ss_pred ccHHHHHHHHHHHhhCCCCCCH-----HHHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 001797 921 EEFYKVLKLLDEMGDKEIKLSH-----ATCCILISS---VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~~g~~p~~-----~~~~~ll~~---~~~~g~~~~A~~~~~~~~~ 970 (1012)
|++++|++........+..|.. ...|+.+.. |.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6666666665555443322211 122222211 5555666666655555555
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=3.3e-08 Score=97.40 Aligned_cols=296 Identities=15% Similarity=0.146 Sum_probs=148.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhc
Q 001797 598 VLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVT-YNALIDGLCKS 676 (1012)
Q Consensus 598 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~ 676 (1012)
-+...+...|++.+|+..|...++.++. +..++..-...|...|+...|+.-+.+.++. .||-.. -..-...+.++
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhc
Confidence 3444455555566666655555543111 1122222233455556656666556555553 444221 11223345566
Q ss_pred CCHHHHHHHHHHHHhCCCCCC--HH----------HH--HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 001797 677 GELERARELFDGIFAKGLTPT--VV----------TY--TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~~~p~--~~----------~~--~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~ 742 (1012)
|.++.|..-|+.++......+ .. .| ...+..+...|+...|+.+...+++. .+-|...+..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHH
Confidence 666666666666655421100 00 11 11222344567777777777777763 22244556666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHH----HHHH---------H
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVT----YTIL---------I 809 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l---------~ 809 (1012)
|...|.+..|+.-++.+-+...+++..+..+...+...|+.+.++...++.++ +.||... |..+ +
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777667777777777777777777777777777766 4555532 1111 0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 001797 810 DYHCKAGTMKDAEHLLVEMQKRVLKPNFR---TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKE 885 (1012)
Q Consensus 810 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 885 (1012)
......+++.++++-.++..+........ .+..+-.++...|++.+|+..-.++++ +.|| ..++.--+.+|...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhh
Confidence 11223344444444444444321110111 122333444444555555555555443 3332 44444444555555
Q ss_pred CChHHHHHHHHHHHHc
Q 001797 886 GNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 886 g~~~~A~~~~~~~~~~ 901 (1012)
..+++|+.-|+.+.+.
T Consensus 355 E~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5555555555555544
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=2.9e-09 Score=112.43 Aligned_cols=227 Identities=11% Similarity=-0.027 Sum_probs=141.8
Q ss_pred CCHHHHHHHHHHhhhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRG-VTPD--NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~-~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|+++++..|..+.+|+.++..+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34566666666666431 1222 23566667777778888888888888888888777888888888888888888888
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 001797 789 LLEDMADKHITP-NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867 (1012)
Q Consensus 789 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 867 (1012)
.|++.++. .| +..+|..++..+...|++++|.+.+++..+. .|+..........+...+++++|...+++....
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 88888763 44 3556777777777888888888888877763 343221111122234566788888888665532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---C---CccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC-
Q 001797 868 VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR---G---LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL- 940 (1012)
Q Consensus 868 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p- 940 (1012)
..|+... ........|+..++ +.++.+.+. . .+....+|..++..+...|++++|+..|+++.+ ..|
T Consensus 195 ~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~--~~~~ 268 (296)
T PRK11189 195 LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA--NNVY 268 (296)
T ss_pred CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCc
Confidence 2333222 12333345555444 234333321 1 022346788888888888888888888888877 444
Q ss_pred CHHHHHHHH
Q 001797 941 SHATCCILI 949 (1012)
Q Consensus 941 ~~~~~~~ll 949 (1012)
+...+...+
T Consensus 269 ~~~e~~~~~ 277 (296)
T PRK11189 269 NFVEHRYAL 277 (296)
T ss_pred hHHHHHHHH
Confidence 444444433
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=4.1e-09 Score=98.70 Aligned_cols=211 Identities=12% Similarity=0.055 Sum_probs=174.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGY 847 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 847 (1012)
.+...|+-.|...|++..|.+-+++.++. -+.+..+|..+...|-+.|+.+.|.+.|++.++. -+.+..+.|..+..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHH
Confidence 45677899999999999999999999985 2335669999999999999999999999999974 233667899999999
Q ss_pred HccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH
Q 001797 848 AGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 848 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
|..|++++|...|++++....-| -..+|.+++.+-.+.|+++.|.+.+++.+... |..+.....++....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999999743333 34789999999999999999999999999997 66788899999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCccChhHHHHhh
Q 001797 927 LKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLV 984 (1012)
Q Consensus 927 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~ 984 (1012)
...++.....| .++....+..++--...|+-+.|.++=..+.+. -|.+-.+-.|.
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f~ 247 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTFL 247 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhHh
Confidence 99999998765 466666655555556789998888876666553 36666655554
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.7e-08 Score=104.77 Aligned_cols=434 Identities=12% Similarity=0.098 Sum_probs=256.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 001797 495 ISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN-DIIYTTLIDGHCKEGN 573 (1012)
Q Consensus 495 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 573 (1012)
..+.+..|+++.|..+|.+.+...+. +.+.|..-..+|.+.|++++|.+=-.+.++. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 34556777888888887777765443 6677777777777777777777666665554 343 5667777777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHH
Q 001797 574 VKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQG-FIKEAFQLHE 652 (1012)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~ 652 (1012)
+++|+.-|.+-++.. +.+...++.+..++ ..+.+. +. ...++..|..+..--...+ ..+.+....-
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l 152 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKIL 152 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence 777777777776652 33455555555554 111111 10 0112222222221100000 0011111111
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHHH
Q 001797 653 KMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF-----AKGLTPTVVTYTTIIDGYCKSGNLT----EAFQLVNE 723 (1012)
Q Consensus 653 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~p~~~~~~~li~~~~~~g~~~----~A~~l~~~ 723 (1012)
+.+..+ +.+.. .|.+-.++..|.-.+.... ..+..+. .....+. .......+
T Consensus 153 ~~~~~~-p~~l~-------~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~-----------~~~~~p~~~~~~~~~~~~d 213 (539)
T KOG0548|consen 153 EIIQKN-PTSLK-------LYLNDPRLMKADGQLKGVDELLFYASGIEIL-----------ASMAEPCKQEHNGFPIIED 213 (539)
T ss_pred HHhhcC-cHhhh-------cccccHHHHHHHHHHhcCccccccccccccC-----------CCCCCcccccCCCCCccch
Confidence 111111 10111 1111111111111111110 0000000 0000000 00000000
Q ss_pred hhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH
Q 001797 724 MPSR-GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH 802 (1012)
Q Consensus 724 ~~~~-~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 802 (1012)
+.+. ...--..-...++++..+..+++.|++.+...++.. ....-++..+.+|...|.+.+....-+...+.|.. ..
T Consensus 214 ~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~r 291 (539)
T KOG0548|consen 214 NTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LR 291 (539)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HH
Confidence 0000 000011234567777788889999999999999998 66678888899999999988887777666655422 11
Q ss_pred H-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH-H
Q 001797 803 V-------TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGV-I 874 (1012)
Q Consensus 803 ~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~ 874 (1012)
. .+..+..+|.+.++++.|+.+|.+.+..-..|+. ..+....+++.+..+...- +.|+.. -
T Consensus 292 ad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e 360 (539)
T KOG0548|consen 292 ADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEE 360 (539)
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHH
Confidence 1 2223445667788999999999987653233322 2233445566655554442 455442 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HH
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VY 953 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~ 953 (1012)
...-+..+++.|++.+|++.|.+++.+. |.|...|...+.+|.+.|++..|++-.+..++ +.|+....|.--+. +.
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHH
Confidence 3344788999999999999999999998 88999999999999999999999999999988 78988877776655 77
Q ss_pred hcCCHHHHHHHHHHHHHCCCccChhHHH
Q 001797 954 EAGNIDKATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 954 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
...+|++|.+.|+..++.. |....+.
T Consensus 438 ~mk~ydkAleay~eale~d--p~~~e~~ 463 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD--PSNAEAI 463 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC--chhHHHH
Confidence 7899999999999999976 6555543
No 92
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.23 E-value=6e-09 Score=110.02 Aligned_cols=218 Identities=15% Similarity=0.025 Sum_probs=152.7
Q ss_pred CCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 677 GELERARELFDGIFAKG-LTPT--VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKAL 753 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~ 753 (1012)
+..+.++.-+.+++... ..|+ ...|..+...|...|++++|...|++.++.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777777777531 1222 3456777778888899999998888888752 335668888888889999999999
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 833 (1012)
..|+++++..|....++..++.++...|++++|.+.+++..+. .|+..............++.++|...|.+.... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~ 195 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-L 195 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-C
Confidence 9999999988888888888999999999999999999998874 444332222222334567899999999765543 2
Q ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHHHc-C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 834 KPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER-G----VEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 834 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.|+...+ .......|+..++ ..++.+.+. . +.| ....|..++..+.+.|++++|+..|+++++.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 2233345666554 345555431 1 112 23678899999999999999999999999887
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.21 E-value=3.4e-07 Score=101.90 Aligned_cols=128 Identities=16% Similarity=0.154 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 562 TTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQ 641 (1012)
Q Consensus 562 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 641 (1012)
.-+...|...|++++|++.+++.++.. |..+..|..-...+-+.|++.+|.+.++.....+.. |...-+..+..+.+.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHC
Confidence 444556666677777777777666652 223556666666667777777777777766665433 555555556666677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 642 GFIKEAFQLHEKMCESGITPNI--------VTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 642 g~~~~A~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
|+.++|.+++....+.+..|-. ......+.+|.+.|++..|++.|..+.+
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777666555432211 1123445667777777777777766654
No 94
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=3.6e-11 Score=87.78 Aligned_cols=49 Identities=37% Similarity=0.764 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 001797 276 PDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFM 324 (1012)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 324 (1012)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666665555666666666665555
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=5.4e-11 Score=86.84 Aligned_cols=49 Identities=49% Similarity=0.887 Sum_probs=28.2
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 001797 311 PNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGIC 359 (1012)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 359 (1012)
||.++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=1.1e-06 Score=87.09 Aligned_cols=364 Identities=12% Similarity=0.111 Sum_probs=189.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCC
Q 001797 530 IREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTY-SVLIHGLSRCGK 608 (1012)
Q Consensus 530 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~ 608 (1012)
...+...|++..|+.-|...++.+ +.+-.++-.-...|...|+...|+.-+.+.++. .||-..- -.-...+.++|+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 333444444444544444444321 112222222333444455555555555544443 3332111 111233445555
Q ss_pred HHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 001797 609 IHEALEVFSELQDKGLVPD--------------VITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLC 674 (1012)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 674 (1012)
++.|..-|+.+++..+... .......+..+...|+...|+.....+++. .+.|...+..-..+|.
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHH
Confidence 5555555555554422110 001122233445566777777777777665 3556666666667777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 675 KSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 675 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
..|++..|+.-++...... ..+..+..-+-..+...|+.+.++..+++.++ +.||....... |-+ ..+..+
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---YKk---lkKv~K 271 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---YKK---LKKVVK 271 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---HHH---HHHHHH
Confidence 7777777766666554432 22444444555666667777777777776665 45655422111 101 111111
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 755 LFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVT---YTILIDYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
.++.| ......++|.++++..+..++.......+. +..+-.++...|++.+|++.-.+.++
T Consensus 272 ~les~---------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 272 SLESA---------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred HHHHH---------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 12111 112346677777777777776432212222 23344556677888888888888775
Q ss_pred CCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH
Q 001797 832 VLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVY 910 (1012)
Q Consensus 832 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 910 (1012)
+.| |..++.--..+|.-...|++|+.-|+.+.+ +.++..-. +.| .+.|.++.++.-++ ..|
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e--~n~sn~~~--------reG-le~Akrlkkqs~kR------DYY 397 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE--LNESNTRA--------REG-LERAKRLKKQSGKR------DYY 397 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcccHHH--------HHH-HHHHHHHHHHhccc------hHH
Confidence 455 466777778888888888888888888876 44433211 111 23444444333322 234
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
..|+ -.+.-...+-.+.|.++..+ ..|++.
T Consensus 398 KILG--VkRnAsKqEI~KAYRKlAqk-WHPDNF 427 (504)
T KOG0624|consen 398 KILG--VKRNASKQEITKAYRKLAQK-WHPDNF 427 (504)
T ss_pred HHhh--hcccccHHHHHHHHHHHHHh-cCCccc
Confidence 4442 34455566777778777654 677653
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=2e-07 Score=90.28 Aligned_cols=317 Identities=16% Similarity=0.121 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHH-HHHH
Q 001797 454 FVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGA-FIRE 532 (1012)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-l~~~ 532 (1012)
--+++.+.-+++..+++.|++++..-.+..+. +....+.|..+|....++..|..+++++-.. .|...-|.. -...
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 34666777778889999999999888777433 6677888888899999999999999988764 344444432 3456
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 533 YTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLID--GHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIH 610 (1012)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 610 (1012)
+.+.+.+..|+.+...|.+. ++...-..-+. .....+++-.+..+.++....| +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 67788888888888887652 22221111111 2334567777777777665432 4445555555667788888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHhcCCHHHHHHHH
Q 001797 611 EALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTY----NALIDGLCKSGELERARELF 686 (1012)
Q Consensus 611 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~ 686 (1012)
+|.+-|....+-+--.....|+..+ +..+.++++.|++...+++++|++..+..- +..+++-. -|+. ..+-
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgNt---~~lh 236 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGNT---LVLH 236 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccch---HHHH
Confidence 8888888776654333445565444 445667788888888888877765332211 11111000 0100 0000
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001797 687 DGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR-GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLA 765 (1012)
Q Consensus 687 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 765 (1012)
... -+..+|.-...+.+.|+++.|.+.+-.|.-+ .-..|++|...+.-.- ..+++-+..+-+.-+++.+|-
T Consensus 237 ~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 237 QSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred HHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC
Confidence 000 1123333344567889999999999888643 2344677765553322 345566677777777888888
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHH
Q 001797 766 STSSFNALLNGLCKSQKIFEANKLLED 792 (1012)
Q Consensus 766 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 792 (1012)
|..++..+.-.||+..-++-|..++.+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 889999999999999888888887765
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=6.7e-08 Score=93.42 Aligned_cols=195 Identities=16% Similarity=0.135 Sum_probs=123.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 001797 526 YGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSV-LIHGLS 604 (1012)
Q Consensus 526 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 604 (1012)
+.+.+..+.+..+++.|++++..-.+.. +.+....+.|..+|....++..|-..++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4445555566677777777777766654 346667777777888888888888888877654 344444432 345667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 001797 605 RCGKIHEALEVFSELQDKGLVPDVITYSSLIS--GFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERA 682 (1012)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 682 (1012)
+.+.+.+|+.+...|.+. |+...-..-+. .....+++..+..+.++.-.. .+..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 778888888888777653 22221111111 234566777777777765432 2445555556666788888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCC
Q 001797 683 RELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVT 730 (1012)
Q Consensus 683 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~ 730 (1012)
.+-|+...+-+--.....|+.-+. ..+.|+++.|+++..+++++|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 888888776532334456665443 44677888888888888777654
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=3.1e-07 Score=101.36 Aligned_cols=197 Identities=12% Similarity=0.032 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 629 ITYSSLISGFCKQGFIKEAFQLHEKMCESGI-TPNI-VTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIID 706 (1012)
Q Consensus 629 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 706 (1012)
..+..+...+...|+.+.+...+....+... .++. .........+...|++++|.+.++++.+.. +.+...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hH
Confidence 3445555555555666665555555443321 1111 111122333455666666666666666542 222223321 11
Q ss_pred HHH----HcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 707 GYC----KSGNLTEAFQLVNEMPSRGVTPDN-FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 707 ~~~----~~g~~~~A~~l~~~~~~~~~~pd~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
.+. ..+..+.+.+.+.... ...|+. .....+...+...|++++|...++++++..|.+...+..++.+|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 111 1233344444333311 122222 233344445556666666666666666666665555666666666666
Q ss_pred cHHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 782 KIFEANKLLEDMADKHIT-PNH--VTYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
++++|...+++..+.... |+. ..|..+...+...|++++|..+++++.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 666666666665543111 111 123345555556666666666665554
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=6.5e-09 Score=110.27 Aligned_cols=251 Identities=14% Similarity=0.077 Sum_probs=181.4
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 707 GYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++.++.+|.+..+...|+-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 4567888889988888888762 335558888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-HCCCCCChHHHHHHHHHHHccCChhHH
Q 001797 787 NKLLEDMADKHITPNHVTYTILI---------DYHCKAGTMKDAEHLLVEMQ-KRVLKPNFRTYTSLLHGYAGIGKRSEM 856 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A 856 (1012)
++.++.-+....+ .. |..-. ..+..........++|-++. +.+..+|+.+...|+-.|.-.|++++|
T Consensus 373 l~~L~~Wi~~~p~--y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK--YV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHhCcc--ch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9998888664211 00 00000 01111122334445555544 345557888888898889999999999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 857 FALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 857 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+..|+.++. ++| |...|+.|+-.+....+.++|+..|+++++.. |.=..++..|+..|...|.|.+|.+.+-.++.
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999985 677 66789999988888889999999999999985 33467788899999999999999998888764
Q ss_pred ---CCCCCC-----HHHHHHHHHH-HHhcCCHHHHHHH
Q 001797 936 ---KEIKLS-----HATCCILISS-VYEAGNIDKATRF 964 (1012)
Q Consensus 936 ---~g~~p~-----~~~~~~ll~~-~~~~g~~~~A~~~ 964 (1012)
++..+. +...|..++. +...++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 111111 1234444444 5666666655443
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=6.2e-09 Score=110.41 Aligned_cols=219 Identities=12% Similarity=0.140 Sum_probs=181.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILIDYHCKAGTMKD 820 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 820 (1012)
-+.+.|++.+|.-.|+.+++++|....+|..|+......++-..|+..+.+.++. .| +......|+-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 3568899999999999999999999999999999999999999999999999984 45 66788889999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHH-----------HHHHccCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCh
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLL-----------HGYAGIGKRSEMFALFDEMVE-RGVEPDGVIYSMMVDAYLKEGNM 888 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 888 (1012)
|+..+++.+... |.. ..+. .............++|-++.. .+..+|+.+...|+-.|.-.|++
T Consensus 372 Al~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 999999987532 110 0000 011111223344556655554 55567889999999999999999
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 001797 889 MKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLES 967 (1012)
Q Consensus 889 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~ 967 (1012)
++|++.|+.++... |.|...|+.|+..+.-..+.++|+..|.++++ +.|.....++.++- +...|.++||.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999997 78899999999999999999999999999999 89998877776666 8899999999999988
Q ss_pred HHH
Q 001797 968 MIK 970 (1012)
Q Consensus 968 ~~~ 970 (1012)
++.
T Consensus 524 AL~ 526 (579)
T KOG1125|consen 524 ALS 526 (579)
T ss_pred HHH
Confidence 776
No 102
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.07 E-value=4e-05 Score=86.23 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=69.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 001797 290 KNKRLEDAKLLLKKMYDLKLNPNEVVYTTLING--FMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKA 367 (1012)
Q Consensus 290 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (1012)
..+++..|........++ .||. .|.....+ +.+.|+.++|..+++.....+.. |..|...+-.+|-+.|+.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 456666666666666654 2333 12222222 34566666666666665544422 666666666666666666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 001797 368 KGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGL 428 (1012)
Q Consensus 368 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 428 (1012)
..++++..+. .|+......+-.+|.+.+++.+-.+.--+|-+ ..+.+.+.+=++++.+
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHH
Confidence 6666666654 45555555555556665555443333333322 2233344444444433
No 103
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.07 E-value=6.9e-07 Score=98.55 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh--HHHHHHHH
Q 001797 769 SFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVL-KPNF--RTYTSLLH 845 (1012)
Q Consensus 769 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~ 845 (1012)
....++..+...|++++|.+.+++.++.. +.+...+..+...+...|++++|+.++++...... .|+. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33344444555555555555555554431 22233444444455555555555555554443210 1111 12334444
Q ss_pred HHHccCChhHHHHHHHHHH
Q 001797 846 GYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 846 ~~~~~g~~~~A~~~~~~~~ 864 (1012)
.+...|++++|...++++.
T Consensus 195 ~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 195 FYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHCCCHHHHHHHHHHHh
Confidence 4555555555555555543
No 104
>PLN02789 farnesyltranstransferase
Probab=98.96 E-value=4.2e-07 Score=95.52 Aligned_cols=230 Identities=12% Similarity=0.062 Sum_probs=128.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ-KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTM--KDA 821 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--~~A 821 (1012)
..+..++|+.++.++++.+|....+|+....++...| ++++++..++++++.. +.+..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 3455566666666666666666666666666666665 4566666666666532 23444555554444455542 455
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCh----HHHHHH
Q 001797 822 EHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE---GNM----MKTIKL 894 (1012)
Q Consensus 822 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~ 894 (1012)
+.+++++++. -+-|..+|.....++...|+++++++.++++++.+.. +...|+....++... |.. ++++++
T Consensus 128 l~~~~kal~~-dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSL-DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHh-CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6666666653 2235556666666666666677777777766653222 445555555444433 222 356666
Q ss_pred HHHHHHcCCccCHHHHHHHHHHHhcc----ccHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhcC-------------
Q 001797 895 VDEMFLRGLVLNQNVYTSLANSLCKE----EEFYKVLKLLDEMGDKEIKLSHATCCI-LISSVYEAG------------- 956 (1012)
Q Consensus 895 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~-ll~~~~~~g------------- 956 (1012)
..+++... |.+..+|+.+..++... ++..+|.+...++.+ ..|+.+.... ++..|++..
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 66666664 55666676666666652 344556666666554 3444443333 333343311
Q ss_pred -----CHHHHHHHHHHHHHCCCccChhHHHH
Q 001797 957 -----NIDKATRFLESMIKFGWVADSTVMMD 982 (1012)
Q Consensus 957 -----~~~~A~~~~~~~~~~g~~~~~~~~~~ 982 (1012)
..++|.++++.+. .+-|....|=.
T Consensus 283 ~~~~~~~~~a~~~~~~l~--~~d~ir~~yw~ 311 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE--VADPMRRNYWA 311 (320)
T ss_pred ccccccHHHHHHHHHHHH--hhCcHHHHHHH
Confidence 3467888888883 55566666543
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.90 E-value=3.6e-07 Score=106.10 Aligned_cols=248 Identities=13% Similarity=0.119 Sum_probs=200.1
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 752 ALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH-----VTYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 752 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
-.+-|++.+...|.+...|...+....+.++.++|++++++++.. +.+.. -.|.++++....-|.-+...+.|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 455678888889999999999999999999999999999999875 54422 267777777778888888999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc-
Q 001797 827 EMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL- 905 (1012)
Q Consensus 827 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 905 (1012)
++.+. ......|..|...|.+.+.+++|.++++.|+++ ......+|..++..+.+.++-+.|..+++++++.- |-
T Consensus 1522 RAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~ 1597 (1710)
T KOG1070|consen 1522 RACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQ 1597 (1710)
T ss_pred HHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chh
Confidence 99874 233457889999999999999999999999983 33567889999999999999999999999999874 43
Q ss_pred -CHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCccChh--HHH
Q 001797 906 -NQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCC-ILISSVYEAGNIDKATRFLESMIKFGWVADST--VMM 981 (1012)
Q Consensus 906 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~ 981 (1012)
........+..-++.|+.+.++.+|+..+. -.|.....| ..+.+=.+.|+.+.++.+|++++..+|.|..- .|-
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 355666688889999999999999999987 355544444 45566788999999999999999999999663 335
Q ss_pred HhhhhhhcccccccccccHHHHHHh
Q 001797 982 DLVKQDQNDANSENTSNSWKEAAAI 1006 (1012)
Q Consensus 982 ~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1012)
..+.-...+++.+.+.-.+.-|++|
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHH
Confidence 6666666677777777777777665
No 106
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=1.4e-06 Score=91.49 Aligned_cols=230 Identities=8% Similarity=0.004 Sum_probs=151.6
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH--HH
Q 001797 710 KSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDG-NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI--FE 785 (1012)
Q Consensus 710 ~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~ 785 (1012)
..++.++|+.+..+++.. .|+.. +|+....++...| ++++++..++++++.+|++..+|+....++.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 345667777777777763 44433 5665555666666 567788888888888877777777776666666653 56
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc---CCh----hHHHH
Q 001797 786 ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGI---GKR----SEMFA 858 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~ 858 (1012)
++.+++++++.. +.+..+|.....++...|++++|++.+.++++.. ..|..+|+.....+.+. |.. ++++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 677777777642 3466677777777777788888888888877642 33555666665555444 222 45666
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc------------
Q 001797 859 LFDEMVERGVEP-DGVIYSMMVDAYLK----EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE------------ 921 (1012)
Q Consensus 859 ~~~~~~~~~~~p-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 921 (1012)
+..+++. ..| +...|+.+..++.. .++..+|.+.+.++...+ +.+..+...|++.|+...
T Consensus 205 y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 205 YTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 6667775 455 55667777777666 244567888888877654 556777888888887532
Q ss_pred ------cHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 922 ------EFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 922 ------~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
..++|.+++..+.+ .+|--..||..
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~--~d~ir~~yw~~ 312 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEV--ADPMRRNYWAW 312 (320)
T ss_pred cccccccHHHHHHHHHHHHh--hCcHHHHHHHH
Confidence 34678888888843 66755555443
No 107
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.1e-07 Score=98.52 Aligned_cols=157 Identities=16% Similarity=0.118 Sum_probs=82.0
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH--HHHcc-
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLH--GYAGI- 850 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~- 850 (1012)
+.++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|.. ...++. .....
T Consensus 109 A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g 179 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATG 179 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhC
Confidence 34455556666666555432 23444455556666666666666666666542 22322 222222 22222
Q ss_pred -CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH-HHHHH
Q 001797 851 -GKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF-YKVLK 928 (1012)
Q Consensus 851 -g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~ 928 (1012)
.++.+|..+|+++.+ ...+++.+.+.++.++...|++++|.+.+++++..+ |.++.+...++.+..-.|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHH
Confidence 256666666666554 234455666666666666666666666666666554 44556666666666666666 44555
Q ss_pred HHHHHhhCCCCCCHH
Q 001797 929 LLDEMGDKEIKLSHA 943 (1012)
Q Consensus 929 ~~~~~~~~g~~p~~~ 943 (1012)
.+.++.. ..|+++
T Consensus 258 ~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 258 YLSQLKQ--SNPNHP 270 (290)
T ss_dssp HHHHCHH--HTTTSH
T ss_pred HHHHHHH--hCCCCh
Confidence 5555554 345544
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=1e-05 Score=101.55 Aligned_cols=375 Identities=11% Similarity=-0.007 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 559 IIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPD-LKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISG 637 (1012)
Q Consensus 559 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 637 (1012)
.........+...|++.+|.......... +. ..........+...|+++.+...+..+.......+..........
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~ 418 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWL 418 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHH
Confidence 34455666788889988887655543211 10 111222233455678888777777665221111122223344445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC------CC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 001797 638 FCKQGFIKEAFQLHEKMCESGIT------PN--IVTYNALIDGLCKSGELERARELFDGIFAKGLTPTV----VTYTTII 705 (1012)
Q Consensus 638 ~~~~g~~~~A~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li 705 (1012)
+...|++++|..++......-.. +. ......+...+...|++++|...+++....-...+. ...+.+.
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg 498 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLG 498 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHH
Confidence 66788999999888877653111 11 112223344556788999999998887763111121 2344555
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C-c--hhhHHH
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRG--V-TPD--NFVYCTLVDGCCRDGNMEKALSLFLEMVQK----GL-A-S--TSSFNA 772 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~--~-~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~-~--~~~~~~ 772 (1012)
..+...|++++|...+++..... . .+. ..++..+...+...|++++|...+++.+.. +. . . ...+..
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 578 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRI 578 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 66778899999988888876421 1 111 124455566777889999998888877653 11 1 1 133456
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChHHHH-----H
Q 001797 773 LLNGLCKSQKIFEANKLLEDMADKH--ITP--NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV-LKPNFRTYT-----S 842 (1012)
Q Consensus 773 l~~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~-----~ 842 (1012)
++..+...|++++|...+.+..... ..+ ....+..+...+...|++++|...+.++.... .......+. .
T Consensus 579 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 579 RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 6777788899999888888775421 112 12344456667778888888888888775421 111111111 1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcC----Ccc-CHHHHHHHH
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPDG---VIYSMMVDAYLKEGNMMKTIKLVDEMFLRG----LVL-NQNVYTSLA 914 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~ 914 (1012)
.+..+...|+.++|..++............ ..+..++.++...|++++|...++++.... .+. ...++..++
T Consensus 659 ~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 659 RLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 123344578888888887665431111111 113456677888888888888888877652 111 234566778
Q ss_pred HHHhccccHHHHHHHHHHHhhC
Q 001797 915 NSLCKEEEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 915 ~~~~~~g~~~~A~~~~~~~~~~ 936 (1012)
.++...|+.++|...+.++++.
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888874
No 109
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.85 E-value=0.00053 Score=77.58 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=143.9
Q ss_pred hcChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHH
Q 001797 256 VGAIDEAFELKESMIHKGLV-PDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFR 334 (1012)
Q Consensus 256 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (1012)
.+++..|+...++++++-+. +..-++.++ .+.|.|+.++|..+++.....+ ..|..|...+-..|...|+.++|..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 57899999999999876432 222233322 3578999999999999887765 3488899999999999999999999
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHH
Q 001797 335 LKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENN----------MAKAYE 404 (1012)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~ 404 (1012)
+++..... .|+......+..+|.+.+++.+-.+.--++-+. ++.+...+=+++..+.+.-. ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999876 577888888889999999888766665555553 23344444455555443211 123444
Q ss_pred HHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 001797 405 LLVDMKKRN-LSPTAYTCNVIINGLCRCSDLEGACRVF-EEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGK 482 (1012)
Q Consensus 405 ~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 482 (1012)
.++.+.+.+ ...+..-...-...+-..|.+++|.+++ ....+.-...+...-+.-++.+...+++.+-.++..++..+
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555443 1111111222223344567777777777 33333333334444455566666677777777777776666
Q ss_pred CC
Q 001797 483 GV 484 (1012)
Q Consensus 483 ~~ 484 (1012)
|.
T Consensus 256 ~~ 257 (932)
T KOG2053|consen 256 GN 257 (932)
T ss_pred CC
Confidence 53
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=9.9e-06 Score=101.66 Aligned_cols=372 Identities=12% Similarity=0.035 Sum_probs=240.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 525 TYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIY----TTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLI 600 (1012)
Q Consensus 525 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 600 (1012)
........+...|++.+|....... + +.... ..........|++..+...++.+.......+........
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a---~---d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a 416 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAA---G---DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQA 416 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC---C---CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHH
Confidence 3445566677889998887655443 2 22221 222334556788887777776652211111222334455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC------CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHH
Q 001797 601 HGLSRCGKIHEALEVFSELQDKGLV------PDV--ITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNI----VTYNA 668 (1012)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~~~~~~~------~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 668 (1012)
..+...|++++|..++......-.. +.. .....+...+...|++++|...+++..+.-...+. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 5667889999999999887653111 111 11222334466789999999999998764222222 24456
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC----CCC--C-CHHHH
Q 001797 669 LIDGLCKSGELERARELFDGIFAK----GLT-PTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR----GVT--P-DNFVY 736 (1012)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~--p-d~~~~ 736 (1012)
+...+...|++++|...+.+.... |.. +...++..+...+...|++++|...+++.... +.. + ....+
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 576 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL 576 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 677788899999999999988753 111 11234455667788999999999999987542 211 1 22344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----Cc-hhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC-CCCHHHH-----
Q 001797 737 CTLVDGCCRDGNMEKALSLFLEMVQKGL----AS-TSSFNALLNGLCKSQKIFEANKLLEDMADKHI-TPNHVTY----- 805 (1012)
Q Consensus 737 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~----- 805 (1012)
..+...+...|++++|...+.+...... .. ...+..++..+...|++++|.+.+++...... ......+
T Consensus 577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 656 (903)
T PRK04841 577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD 656 (903)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence 5566667788999999999998866421 11 25566688889999999999999988854211 1111111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCC-HHHHHH
Q 001797 806 TILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF---RTYTSLLHGYAGIGKRSEMFALFDEMVER----GVEPD-GVIYSM 877 (1012)
Q Consensus 806 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~ 877 (1012)
...+..+...|+.+.|..++............ ..+..+..++...|++++|...++++.+. +..++ ..+...
T Consensus 657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~ 736 (903)
T PRK04841 657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLIL 736 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 11223445689999999998775532111111 12346777888999999999999998762 22222 245667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
++.++.+.|+.++|...+.++++..
T Consensus 737 la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 737 LNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7789999999999999999999986
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.83 E-value=7.2e-07 Score=86.10 Aligned_cols=177 Identities=14% Similarity=0.127 Sum_probs=144.7
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 752 ALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 752 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
+...+-......|.+..+ ..+...+...|+-+.+..+....... .+.|......++....+.|++.+|+..++++...
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 444444555566666666 66777788888888887777775542 3446666667888999999999999999999874
Q ss_pred CCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHH
Q 001797 832 VLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVY 910 (1012)
Q Consensus 832 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 910 (1012)
-++|...|+.++-+|.+.|+.++|..-|.++++ +.| ++..+++++-.|.-.|+++.|..++......+ +.|..+-
T Consensus 130 -~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~ 205 (257)
T COG5010 130 -APTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVR 205 (257)
T ss_pred -CCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHH
Confidence 466888999999999999999999999999997 455 66788899999999999999999999999886 4588999
Q ss_pred HHHHHHHhccccHHHHHHHHHHHh
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
..|+.+....|++++|.++..+-.
T Consensus 206 ~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 206 QNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999999999877654
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=0.00038 Score=74.08 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 001797 609 IHEALEVFSELQDKGLVPDVITYSSLISGFCKQ---GFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERAREL 685 (1012)
Q Consensus 609 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 685 (1012)
.+++..+++.....-...+..+|..+.+.--.. ++.+.....+++++......-..+|..+++.-.+..-+..|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456666776665543333444454444322111 23666677777776543222234566777777777778888888
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 686 FDGIFAKGLTP-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764 (1012)
Q Consensus 686 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 764 (1012)
|.++.+.+..+ .+..+++++.-|| .++.+-|.++|+--.+. +.-+..--...++-+...++-..+..+|++++....
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 88888776555 6777778887776 57788888888876654 333344445667777788888888888888888733
Q ss_pred Cch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 765 AST---SSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 765 ~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
... ..|..++..-..-|++..+.++-+++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 322 78888888888888888888887777553
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.9e-07 Score=101.81 Aligned_cols=221 Identities=14% Similarity=0.075 Sum_probs=171.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 001797 728 GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTI 807 (1012)
Q Consensus 728 ~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 807 (1012)
+++|-...-..+...+...|-...|..+|++. ..|...+.+|+..|+..+|..+..+..+ -+|++..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 35565556667777888888889999888876 4567788889999988899888888777 4788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 001797 808 LIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEG 886 (1012)
Q Consensus 808 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 886 (1012)
+++..-..--+++|.++.+..... .-..+.......++++++.+.++...+ +.| -..+|..++.+..+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHh
Confidence 888877777788888887654432 122233333457889999999988876 555 6688999999999999
Q ss_pred ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHH
Q 001797 887 NMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFL 965 (1012)
Q Consensus 887 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~ 965 (1012)
+++.|.+.|....... |.+...|+++..+|.+.|+..+|...+.++.+ +.-++...|...-- ..+.|.|++|++.+
T Consensus 534 k~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK--cn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK--CNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh--cCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 9999999999999886 77889999999999999999999999999988 44444444333222 46789999999999
Q ss_pred HHHHH
Q 001797 966 ESMIK 970 (1012)
Q Consensus 966 ~~~~~ 970 (1012)
+++..
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 99887
No 114
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=2.8e-07 Score=95.60 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCh-HHHHHH
Q 001797 817 TMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNM-MKTIKL 894 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~ 894 (1012)
.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.++++ ..| ++.+..+++.+....|+. +.+.++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 344555555544432 334444444444445555555555555444442 222 334444444444444444 334444
Q ss_pred HHHHHHc
Q 001797 895 VDEMFLR 901 (1012)
Q Consensus 895 ~~~~~~~ 901 (1012)
+.++...
T Consensus 259 l~qL~~~ 265 (290)
T PF04733_consen 259 LSQLKQS 265 (290)
T ss_dssp HHHCHHH
T ss_pred HHHHHHh
Confidence 4444433
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=3.4e-07 Score=84.68 Aligned_cols=120 Identities=9% Similarity=0.017 Sum_probs=92.1
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.++++..+ ..|+. +..++..+...|++++|...|+.++. ..| +...+..++.++...|++++|+..|++++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555554 34443 45567777888888888888888876 455 6677788888888888888888888888887
Q ss_pred CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 902 GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 902 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
. |.++..+..++.++...|++++|++.++++++ +.|+++.++.+.+.
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~~~ 134 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIRQN 134 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 6 67788888888888888888888888888887 77888777766543
No 116
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.73 E-value=0.00069 Score=72.17 Aligned_cols=185 Identities=17% Similarity=0.204 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 001797 644 IKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG---ELERARELFDGIFAK-GLTPTVVTYTTIIDGYCKSGNLTEAFQ 719 (1012)
Q Consensus 644 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 719 (1012)
.+++..+++..+..-..-+..+|..+.+.--..- ..+.....+++++.. ...|+ .+|..+++.-.+..-++.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 4556666666554322223444444433221111 255556666666654 22333 456667777777777888888
Q ss_pred HHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 001797 720 LVNEMPSRGVTP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHI 798 (1012)
Q Consensus 720 l~~~~~~~~~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 798 (1012)
+|.++.+.+..+ +..+.++++.-+| .++.+-|..+|+.-++..++.+.--...++.+...++-..|..+|++.+..++
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 888888877766 5556777776554 56788888888888888887777777777888888888888888888887755
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 799 TPN--HVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 799 ~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
+|+ ...|..+++.-..-|++..+.++-+++..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 35788888888888888888888776654
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.69 E-value=3.1e-06 Score=86.85 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRG--LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.++..+.+.|++++|+..+++++... .|.....+..++.++...|++++|.+.++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555666677777777777766653 112345666677777777777777766666544
No 118
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=8.1e-06 Score=95.37 Aligned_cols=203 Identities=15% Similarity=0.165 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHH
Q 001797 697 TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDN-----FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFN 771 (1012)
Q Consensus 697 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 771 (1012)
+...|-..+....+.++.++|.++.++++.. +.+.. .+|.++++.....|.-+...++|+++.+. .++..+|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cchHHHHH
Confidence 3455666666666677777777777766654 32221 25666666666666666666666666553 33346666
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHH
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN---FRTYTSLLHGYA 848 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~ 848 (1012)
.|...|.+.+++++|.++++.|.++ +......|..++..+.++.+-++|..++.++++. -|. .......+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 6666777777777777777776664 3345556666666666666666666666666653 222 112223344445
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc
Q 001797 849 GIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL 905 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 905 (1012)
+.|+.+.++.+|+..+.. .+--...|+.+++.-.+.|+.+.+..+|+++...++++
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 566666666666666541 11134556666666666666666666666666665543
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=1.9e-06 Score=94.41 Aligned_cols=222 Identities=17% Similarity=0.123 Sum_probs=173.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 001797 589 ILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNA 668 (1012)
Q Consensus 589 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 668 (1012)
.+|--..-..+...+...|-..+|..+|+++. .|...|.+|+..|+..+|..+..+.+++ +|+...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34444555567778888888889988887654 3566788888899889998888888774 778888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 669 LIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGN 748 (1012)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~ 748 (1012)
+++......-+++|.++++....+ +-..+.....+.++++++.+.++.-.+. .+.-..+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhh
Confidence 888877777788888888776543 2222222334578899999999887663 12244588888888888999
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 749 MEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEM 828 (1012)
Q Consensus 749 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 828 (1012)
++.|.+.|...+...|+...+|+.+..+|.+.|+..+|...+.+..+.+ ..+...|.+.+....+.|.+++|.+.+.++
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998865 445556777778888999999999999888
Q ss_pred HH
Q 001797 829 QK 830 (1012)
Q Consensus 829 ~~ 830 (1012)
..
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 65
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=2e-06 Score=84.28 Aligned_cols=117 Identities=11% Similarity=0.169 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HhcCC--hHH
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAY-LKEGN--MMK 890 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~ 890 (1012)
.++.+++...+++.++. .+.|...|..|+..|...|++++|...|+++++ +.| +...+..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 55667777777776654 344677788888888888888888888888876 445 566677777654 56666 478
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
|.++++++++.+ |.+..++..++..+...|++++|+..++++++
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888888888876 56777888888888888888888888888876
No 121
>PF12854 PPR_1: PPR repeat
Probab=98.67 E-value=2.6e-08 Score=64.82 Aligned_cols=32 Identities=41% Similarity=0.846 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 001797 273 GLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKM 304 (1012)
Q Consensus 273 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 304 (1012)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.5e-05 Score=76.22 Aligned_cols=187 Identities=14% Similarity=0.145 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHhhh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 712 GNLTEAFQLVNEMPS---RG-VTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~---~~-~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
.+.++..+++.++.. .| ..|+.. .|..+.-+....|+.+.|...++.+....|.+..+-..-+..+...|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345555555555432 12 334433 3444444555667777777777777776666666655556666667777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 001797 787 NKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER 866 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 866 (1012)
.++++.+++.+ +.|.+++..=+...-..|+.-+|++-+.+..+. +..|...|.-|...|...|++++|.-.+++++-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll- 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL- 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-
Confidence 77777777653 335556655555556667766777777666664 556777777777777777777777777777764
Q ss_pred CCCC-CHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcC
Q 001797 867 GVEP-DGVIYSMMVDAYLKEG---NMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 867 ~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 902 (1012)
+.| ++..+..+++.+.-.| +.+-|.++|.+.++..
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 555 3444445555554443 4566777777777664
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=3.3e-06 Score=82.69 Aligned_cols=147 Identities=11% Similarity=0.219 Sum_probs=118.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 001797 809 IDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGN 887 (1012)
Q Consensus 809 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 887 (1012)
+..|...|+++......+++.. |. ..+...++.+++...+++.++ ..| +...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3457788888876544433221 11 012236777888888888887 444 78899999999999999
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHHH-hcccc--HHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 001797 888 MMKTIKLVDEMFLRGLVLNQNVYTSLANSL-CKEEE--FYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATR 963 (1012)
Q Consensus 888 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~ 963 (1012)
+++|...++++.... |.+..++..++.++ ...|+ .++|.++++++++ ..|++...+.+++. +.+.|++++|+.
T Consensus 89 ~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999997 77899999999975 67787 5999999999998 78999888888777 889999999999
Q ss_pred HHHHHHHCC
Q 001797 964 FLESMIKFG 972 (1012)
Q Consensus 964 ~~~~~~~~g 972 (1012)
.++++++..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 999999855
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=4.8e-08 Score=63.57 Aligned_cols=32 Identities=47% Similarity=0.834 Sum_probs=15.9
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 001797 343 GIKLNLFTYNALIGGICKAGEIEKAKGLMTEM 374 (1012)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (1012)
|+.||.+||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=4.3e-06 Score=85.83 Aligned_cols=183 Identities=15% Similarity=0.104 Sum_probs=110.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh---h
Q 001797 697 TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD-N---FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS---S 769 (1012)
Q Consensus 697 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 769 (1012)
....+..+...+...|++++|...++++... .|+ . .++..+..++...|++++|+..++++++..|.++. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3445555666666677777777777766653 232 1 24556666677777777777777777777665553 4
Q ss_pred HHHHHHHHHhc--------CcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 001797 770 FNALLNGLCKS--------QKIFEANKLLEDMADKHITPNHV-TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTY 840 (1012)
Q Consensus 770 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 840 (1012)
+..++.++... |++++|.+.++++.+. .|+.. .+..+..... .... . ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR-------L-------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH-------H-------HHHH
Confidence 55566666554 6777777777777764 33322 2221111100 0000 0 0011
Q ss_pred HHHHHHHHccCChhHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 841 TSLLHGYAGIGKRSEMFALFDEMVERGV-EP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 841 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
..+...+...|++++|...++++++... .| ....+..++.++...|++++|.++++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2455667788888888888888876311 23 3467778888888888888888888777665
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=4.8e-05 Score=80.22 Aligned_cols=164 Identities=16% Similarity=0.087 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 001797 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAY 882 (1012)
Q Consensus 804 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 882 (1012)
......-.+...|++++|+..++.+... .+.|+..+......+.+.++.++|.+.+++++. ..|+ ......++.+|
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHH
Confidence 3334444566789999999999998874 334555566778889999999999999999996 6675 66777888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKAT 962 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~ 962 (1012)
.+.|++.+|+..++...... |.|+..|..|+.+|...|+..+|...+.+. +.-.|+|++|+
T Consensus 385 l~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~ 445 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAI 445 (484)
T ss_pred HhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHH
Confidence 99999999999999998886 788999999999999999999998887765 45679999999
Q ss_pred HHHHHHHHC--CCccChhHHHHhhhhhhc
Q 001797 963 RFLESMIKF--GWVADSTVMMDLVKQDQN 989 (1012)
Q Consensus 963 ~~~~~~~~~--g~~~~~~~~~~~~~~~~~ 989 (1012)
..+....+. .-.|+-..+...|++-+.
T Consensus 446 ~~l~~A~~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 446 IFLMRASQQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 998888773 234455555555555433
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=1.1e-05 Score=94.25 Aligned_cols=209 Identities=10% Similarity=0.057 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--------
Q 001797 697 TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST-------- 767 (1012)
Q Consensus 697 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 767 (1012)
+...+..|+..+...+++++|.++.++..+ ..|+.. .|..++..+.+.++...+..+ .++...+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 345677788888888888888888887666 355544 344444456666776666655 4444443333
Q ss_pred -----------hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001797 768 -----------SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN 836 (1012)
Q Consensus 768 -----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 836 (1012)
.++..|+.+|-+.|+.++|...++++++.. +.|+.+.|.++..|... +.++|++++.++...
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 444455555555555555555555555543 33445555555555555 555555555554432
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCccCHHHHHHHH
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-GLVLNQNVYTSLA 914 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~ 914 (1012)
+...+++.++.+++.++.+ ..|+ ...+..+. +++... +...-...+.-+-
T Consensus 179 ----------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 179 ----------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIE----------------RKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred ----------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHH----------------HHHHhhhccchhHHHHHHHH
Confidence 3334455555555555554 2222 11111111 111111 1111223344445
Q ss_pred HHHhccccHHHHHHHHHHHhhCCCCCCHHHHH
Q 001797 915 NSLCKEEEFYKVLKLLDEMGDKEIKLSHATCC 946 (1012)
Q Consensus 915 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 946 (1012)
..|.+.++|++++.+++.+++ ++|.+....
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~ 260 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILE--HDNKNNKAR 260 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHh--cCCcchhhH
Confidence 666777777788888877776 556554333
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.56 E-value=1.8e-05 Score=92.03 Aligned_cols=138 Identities=9% Similarity=0.063 Sum_probs=74.8
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH-VTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 837 (1012)
.....+....++..|+.+..+.|++++|..+++...+ +.|+. .....++..+.+.+++++|+..+++.... -+.+.
T Consensus 78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p~~~ 154 (694)
T PRK15179 78 YVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GSSSA 154 (694)
T ss_pred HHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CCCCH
Confidence 3344445555556666666666666666666666555 33432 34445555555666666666666555542 12233
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.....+..++.+.|++++|..+|++++. ..| +...+..++.++.+.|+.++|...|+++.+.
T Consensus 155 ~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 155 REILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445555555566666666666666554 222 3455555555555666666666666665555
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=3.1e-06 Score=78.33 Aligned_cols=122 Identities=7% Similarity=-0.029 Sum_probs=86.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 001797 788 KLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867 (1012)
Q Consensus 788 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 867 (1012)
.++++.++ +.|+. +..+...+...|++++|...|+++... -+.+...|..++.++...|++++|...|+++++
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-- 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM-- 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence 34444444 33433 445667777888888888888887764 233666777888888888888888888888886
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 001797 868 VEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 868 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
..| +...+..++.++...|++++|+..+++++... |.++..|...+.+.
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 445 66777788888888888888888888888875 55666665555443
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=2.9e-05 Score=90.74 Aligned_cols=241 Identities=10% Similarity=0.078 Sum_probs=170.6
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 623 GLVP-DVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTY 701 (1012)
Q Consensus 623 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 701 (1012)
++.| +...+..|+..+...+++++|.++.+..++.. +.....|..++..+...++.+++..+ .
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------- 88 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N------------- 88 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h-------------
Confidence 3444 56678889999999999999999999877752 22344455555567777776665544 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 702 TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 702 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
++.......++.-...+...|.. ..-+...+..++.+|-+.|+.++|..+|+++++.+|.++.+.+.++..|...
T Consensus 89 --~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 --LIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE- 163 (906)
T ss_pred --hhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 23333334444333334444444 2334458889999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHccCChhHHHHHH
Q 001797 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF-RTYTSLLHGYAGIGKRSEMFALF 860 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 860 (1012)
++++|.+++.+.+.. +...+++.++.++|.++... .|+. ..+.. +.
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~----------------i~ 210 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLR----------------IE 210 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHH----------------HH
Confidence 999999999988763 56677899999999999874 3332 22222 22
Q ss_pred HHHHH-cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 861 DEMVE-RGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 861 ~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
+.+.. .+..--..++.-+...|.+.++|++++.+++.+++.. +.|..+...++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 22222 1112223456666777888888999999999999886 556677777777766
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=4.2e-05 Score=73.25 Aligned_cols=189 Identities=15% Similarity=0.147 Sum_probs=131.1
Q ss_pred cCCHHHHHHHHHHHHHcCC------CchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 001797 746 DGNMEKALSLFLEMVQKGL------ASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMK 819 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 819 (1012)
..+.++..+++..++...+ +.-..|..+.-+....|+.+.|..+++.+.+. ++.+...-..-+-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 4577888888887765322 22255666666667778888888888887775 3334333333333455678888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001797 820 DAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF 899 (1012)
Q Consensus 820 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 899 (1012)
+|+++++.+++.. +.|.+++..-+...-.+|+.-+|++.+.+-++. +..|.+.|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888887652 446667766666666777777888877777763 44478888888888888888888888888888
Q ss_pred HcCCccCHHHHHHHHHHHhccc---cHHHHHHHHHHHhhCCCCC
Q 001797 900 LRGLVLNQNVYTSLANSLCKEE---EFYKVLKLLDEMGDKEIKL 940 (1012)
Q Consensus 900 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p 940 (1012)
-.. |.++..+..++..++-.| +++-|.+.|.+.++ +.|
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk--l~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK--LNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hCh
Confidence 775 667777777887766655 45567778888776 555
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=3.3e-05 Score=74.92 Aligned_cols=157 Identities=10% Similarity=0.027 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 738 TLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGT 817 (1012)
Q Consensus 738 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 817 (1012)
.+...+...|+-+....+..+.....+.+......++....+.|++.+|...+.+.... -++|...|+.+.-+|.+.|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 33344444455455544444444444444444444555555555555555555555442 23445555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 001797 818 MKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDE 897 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 897 (1012)
.++|..-|.+..+. ..-++...+.|+..+.-.|+++.|..++......+ .-|..+-.++..+....|++++|.++...
T Consensus 150 ~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 55555555555542 11233444555555555555555555555554311 11344444455555555555555554433
No 133
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=6.8e-05 Score=76.87 Aligned_cols=284 Identities=12% Similarity=0.072 Sum_probs=135.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHH
Q 001797 602 GLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITP-NIVTYNALIDGLCKSGELE 680 (1012)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 680 (1012)
.+.+..++.+|+..+...++..+. +...|..-+..+...|++++|.--.+.-++. .| ......-...++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 344555666666666666665433 3444555555555566666665555444332 11 1112223333333444444
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHH-HHHhcCCHHHHHHHHHH
Q 001797 681 RARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGV-TPDNFVYCTLVD-GCCRDGNMEKALSLFLE 758 (1012)
Q Consensus 681 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~pd~~~~~~l~~-~~~~~g~~~~A~~~~~~ 758 (1012)
+|...++ +...| ....|+..++....... +|-..++..+-. ++.-.|++++|...-..
T Consensus 135 ~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 4444443 11111 11222233333322211 233334444432 23456677777777777
Q ss_pred HHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 001797 759 MVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR 838 (1012)
Q Consensus 759 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 838 (1012)
.++.++.+..+...-+.++.-.++.+.|...|++.+. ..|+...-..+-.. .+.+..+.
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~----------~k~le~~k--------- 253 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMM----------PKKLEVKK--------- 253 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhh----------HHHHHHHH---------
Confidence 7776666666666566666666777777777777665 33443321111000 00011111
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-----DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSL 913 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 913 (1012)
.-++-..+.|++.+|.+.|.+.+. +.| +...|...+.+..+.|+..+|+.-.+.+++.. +.-...|..-
T Consensus 254 ---~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~r 327 (486)
T KOG0550|consen 254 ---ERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRR 327 (486)
T ss_pred ---hhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHH
Confidence 112233455555555555555553 333 23344444555556666666666666666553 1112334444
Q ss_pred HHHHhccccHHHHHHHHHHHhh
Q 001797 914 ANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 914 ~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+.++...++|++|.+-++++.+
T Consensus 328 a~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 328 ANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555566666666666666554
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.41 E-value=6.3e-05 Score=87.50 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=121.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHH
Q 001797 694 LTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNA 772 (1012)
Q Consensus 694 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 772 (1012)
.+.+...+..|..+..+.|++++|..+++...+ +.||.. ....++..+.+.+++++|+..+++++...|++......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 445678888888899999999999999999887 567665 67778888889999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 001797 773 LLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLL 844 (1012)
Q Consensus 773 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 844 (1012)
++.++.+.|++++|.++|+++... .+.+..++..+...+...|+.++|...|++..+. ..|-...|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 999999999999999999999873 2345778888999999999999999999998875 345445555443
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=0.00012 Score=77.43 Aligned_cols=149 Identities=16% Similarity=0.111 Sum_probs=87.5
Q ss_pred chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 001797 766 STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN-FRTYTSLL 844 (1012)
Q Consensus 766 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 844 (1012)
........+-.+...|++++|+..+..++.. .+.|+..+....+.+.+.++.++|.+.++++.. ..|+ ......+.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a 381 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLA 381 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHH
Confidence 3345555555556666666666666666653 334455555556666666667777766666665 3343 44455666
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHH
Q 001797 845 HGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFY 924 (1012)
Q Consensus 845 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 924 (1012)
.+|.+.|++.+|+..++..... .+.|+..|..|+.+|...|+..+|...+. ..+.-.|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHH
Confidence 6666666666666666666542 22255666666666666666555544332 2344456666
Q ss_pred HHHHHHHHHhhC
Q 001797 925 KVLKLLDEMGDK 936 (1012)
Q Consensus 925 ~A~~~~~~~~~~ 936 (1012)
+|+..+..+.+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 666666666543
No 136
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=8.6e-06 Score=75.15 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANS 916 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 916 (1012)
.....++..+...|++++|...++.+.+. .| +...+..++.++...|++++|...++++...+ |.+...+..++.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 34555666666677777777777666652 23 45566666677777777777777777766664 5566667777777
Q ss_pred HhccccHHHHHHHHHHHhhCCCCCCHHHHH
Q 001797 917 LCKEEEFYKVLKLLDEMGDKEIKLSHATCC 946 (1012)
Q Consensus 917 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 946 (1012)
+...|++++|.+.++++.+ +.|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 7777777777777777766 456555443
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00071 Score=65.69 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH
Q 001797 852 KRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
.+.+|.-+|+++-++ ..|++.+.+..+.+....|++++|..+++.++.+. +.++.+...++-+-...|.-
T Consensus 188 k~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 344444455554431 34444444444444444555555555555555443 23344444444443334433
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=4.4e-06 Score=82.35 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=96.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcccc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
++-..+.++|++|+..|.++++ +.| |+.-|..-+.+|.+.|.++.|++-.+.++..+ |....+|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCc
Confidence 3446678889999999999986 677 44555577788999999999999999988886 5557888889999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHH---HHHHHHHHHHHCCCccChhHHH
Q 001797 923 FYKVLKLLDEMGDKEIKLSHATCCILISSVY-EAGNID---KATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 923 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~-~~g~~~---~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
+++|++.|+++++ ++|+++++...+...- +.+... .+..-++.....|.-|+...+-
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~ 225 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMF 225 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhh
Confidence 9999999999888 8899988877765522 122222 3344444444444446555544
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.00066 Score=65.89 Aligned_cols=151 Identities=17% Similarity=0.150 Sum_probs=97.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----
Q 001797 635 ISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCK---- 710 (1012)
Q Consensus 635 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 710 (1012)
...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+- .+..|.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 345777777888777766521 2222222334456667777788877777763 244556656655543
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH-HHH
Q 001797 711 SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA-NKL 789 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~ 789 (1012)
.+.+.+|.-+|++|.++ .+|+..+.+..+.++...|++++|..+++.++.+.+..+.+...++-+-...|...++ .+.
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 44577788888888765 6777777777777777888888888888888888777776666665555555554443 344
Q ss_pred HHHHHh
Q 001797 790 LEDMAD 795 (1012)
Q Consensus 790 ~~~~~~ 795 (1012)
+.++..
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=3.1e-05 Score=71.36 Aligned_cols=107 Identities=14% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP 835 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 835 (1012)
+++++...|.+......++..+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...+++..+. .+.
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p~ 83 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-DPD 83 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence 333444444433344444444444444444444444443321 223333444444444444444444444443332 122
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHH
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 864 (1012)
+...+..++..+...|++++|...|+.++
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23333334444444444444444444444
No 141
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=0.00089 Score=69.02 Aligned_cols=90 Identities=18% Similarity=0.070 Sum_probs=69.4
Q ss_pred HHHHcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH
Q 001797 707 GYCKSGNLTEAFQLVNEMPSR---GVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI 783 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~~~---~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 783 (1012)
-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+.++..++.-..++..-+.++.-.++|
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888763 22334445666666777888899999888888888877778888888888888888
Q ss_pred HHHHHHHHHHHhC
Q 001797 784 FEANKLLEDMADK 796 (1012)
Q Consensus 784 ~~A~~~~~~~~~~ 796 (1012)
++|.+-+++..+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888888764
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.24 E-value=1.8e-05 Score=71.45 Aligned_cols=91 Identities=7% Similarity=-0.053 Sum_probs=47.6
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcc
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 920 (1012)
.+...+...|++++|.++|+-... +.| +..-|..|+-++...|++++|+..|..+.... |.++..+..++.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 444444555555555555555543 333 33444455555555555555555555555554 44555555555555555
Q ss_pred ccHHHHHHHHHHHhh
Q 001797 921 EEFYKVLKLLDEMGD 935 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~ 935 (1012)
|+.+.|++.|+.++.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555543
No 143
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.19 E-value=0.0095 Score=61.12 Aligned_cols=293 Identities=18% Similarity=0.179 Sum_probs=167.8
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhh--HHHH
Q 001797 596 YSVLIHGLS--RCGKIHEALEVFSELQDKGLVPDVITYSSLISG--FCKQGFIKEAFQLHEKMCESGITPNIVT--YNAL 669 (1012)
Q Consensus 596 ~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l 669 (1012)
|..|-.++. -.|+-..|.+.-.+..+. +..|......++.+ -.-.|++++|.+-|+.|... |.... +..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444443 346666776666554322 22244444444443 34578999999999998762 22221 2333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHH--HHHHHHHHH---
Q 001797 670 IDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNF--VYCTLVDGC--- 743 (1012)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~--~~~~l~~~~--- 743 (1012)
.-.-.+.|+.+.|+.+-+....+. +.-...+...+...|..|+|+.|+++++.-.... +.++.. .-..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 333456788888888888877652 2234667788888899999999999988654432 334432 122222221
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEH 823 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 823 (1012)
.-..+...|...-.+..+..|+-...-..-+..+.+.|+..++-.+++.+-+....|+.. +...+.+.|+ .+..
T Consensus 240 ~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHH
Confidence 122356677777777777777666666666777778888888888888777753333322 1222334443 2333
Q ss_pred HHHHHHH-CCCCCC-hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHH
Q 001797 824 LLVEMQK-RVLKPN-FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK-EGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 824 ~~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 900 (1012)
-+++..+ ..++|| ......+..+-...|++..|..--+.... ..|....|..|.+.-.. .|+-.++..++.+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 3333322 113443 33445555666666666666655555543 55555556555544433 3666666666666655
Q ss_pred c
Q 001797 901 R 901 (1012)
Q Consensus 901 ~ 901 (1012)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 144
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.16 E-value=0.013 Score=60.16 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=177.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHhhhCCCCCCHHH--HHHHHHHHHhcCCHH
Q 001797 675 KSGELERARELFDGIFAKGLTPTVVTYTTIID--GYCKSGNLTEAFQLVNEMPSRGVTPDNFV--YCTLVDGCCRDGNME 750 (1012)
Q Consensus 675 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~~~~~~~~pd~~~--~~~l~~~~~~~g~~~ 750 (1012)
..|+-..|.++-.+.... +..|......++. +-.-.|++++|.+-|+.|.. .|.... +..|.-.-.+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 356777777766554422 1223333322332 23347888888888888875 232221 122222224678888
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHH--HHHHHHHHH---HhcCCHHHHHHH
Q 001797 751 KALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKH-ITPNHV--TYTILIDYH---CKAGTMKDAEHL 824 (1012)
Q Consensus 751 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~---~~~g~~~~A~~~ 824 (1012)
.|+.+-+..-..-|.-.-+....+...|..|+|+.|+++.+.-.... +.++.. .-..|+.+- .-.-+...|...
T Consensus 172 aAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 172 AARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 88888888888888888888888888889999999998888765432 333332 111222211 112356666666
Q ss_pred HHHHHHCCCCCChHH-HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---HH
Q 001797 825 LVEMQKRVLKPNFRT-YTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEM---FL 900 (1012)
Q Consensus 825 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~ 900 (1012)
-.+..+ +.||..- -..-...+.+.|+..++-.+++.+-+ ..|.+.++.... +.+.|+. ++.-++++ ..
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK--~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK--AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh--cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 655554 5666553 33446788899999999999999886 455555543333 3456653 33333333 22
Q ss_pred cCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 901 RGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 901 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
.. +.+......++.+-...|++..|..-.+.+.. ..|....+..+..- -.+.|+-.++...+-+..+
T Consensus 324 lk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 22 45778888888999999999999988888876 67765555444443 4567999999998888777
No 145
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=5.7e-05 Score=68.26 Aligned_cols=98 Identities=7% Similarity=0.080 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
+....+.++..+...|++++|.++|+-+.... |.+...|..|+-++...|++++|+..|..+.. +.|+++..+...+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHH
Confidence 33455566666777777777777777777665 55677777777777777777777777777776 6677766666555
Q ss_pred H-HHhcCCHHHHHHHHHHHHHC
Q 001797 951 S-VYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 951 ~-~~~~g~~~~A~~~~~~~~~~ 971 (1012)
. +...|+.++|++.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 5 66777777777777777763
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=7.8e-05 Score=69.38 Aligned_cols=117 Identities=11% Similarity=0.129 Sum_probs=72.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCh
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNM 888 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 888 (1012)
..++...+...++.+... .+.+ ......+...+...|++++|...|+.+++....|+ ......|+.++...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~-~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 366777777777777653 2222 12333455666777777777777777776432222 12344566777777777
Q ss_pred HHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 001797 889 MKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEM 933 (1012)
Q Consensus 889 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 933 (1012)
++|+..++..... +..+..+..+++++.+.|++++|+..|+++
T Consensus 102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777664332 244566667777777777777777777664
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.12 E-value=0.00011 Score=68.47 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHH
Q 001797 746 DGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHITPN--HVTYTILIDYHCKAGTMKD 820 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 820 (1012)
.++...+...++.+...+|..+ .+...++..+...|++++|...|+.+.+....|+ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555555555442 3333444555555555555555555554321111 1122334444444555555
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
|+..++.... .......+..++..|...|++++|+..|++
T Consensus 104 Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5544433211 111222333444444444444444444443
No 148
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.07 E-value=5e-05 Score=77.41 Aligned_cols=285 Identities=17% Similarity=0.169 Sum_probs=160.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhh--hC--CCC-CCHHHHHHHH
Q 001797 670 IDGLCKSGELERARELFDGIFAKGLTPTV----VTYTTIIDGYCKSGNLTEAFQLVNEMP--SR--GVT-PDNFVYCTLV 740 (1012)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~~~--~~--~~~-pd~~~~~~l~ 740 (1012)
..-+|+.|+......+|+..++-|.. |. ..|..|.++|.-.+++++|+++...=+ .+ |-+ -....-..|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 34588999999999999999887643 33 346666677777788888887654211 10 111 1122334455
Q ss_pred HHHHhcCCHHHHHHHHHHHH----HcCCC--chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 001797 741 DGCCRDGNMEKALSLFLEMV----QKGLA--STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK 814 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 814 (1012)
+.+--.|.+++|+....+-+ +.+.. ...++..|+..|...|+--.-.. -.+.|-.|+.++
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~---------- 168 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT---------- 168 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH----------
Confidence 56666678888876655432 22221 22667777777776664210000 000011111110
Q ss_pred cCCHHHHHHHHHHHHH----CCCC-CChHHHHHHHHHHHccCChhHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHh
Q 001797 815 AGTMKDAEHLLVEMQK----RVLK-PNFRTYTSLLHGYAGIGKRSEMFALFDEMVE----RGVEP-DGVIYSMMVDAYLK 884 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~ 884 (1012)
..++.|.++|.+-++ .|-. .--..|..|.+.|.-.|++++|+...+.=++ .|-.. ....+.++++++.-
T Consensus 169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 012333444432221 1100 0123566677777777888888776554332 33221 23456677888888
Q ss_pred cCChHHHHHHHHHHHHcCC-----ccCHHHHHHHHHHHhccccHHHHHHHHHHHhh--CCC---CCCHHHHHHHHHHHHh
Q 001797 885 EGNMMKTIKLVDEMFLRGL-----VLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD--KEI---KLSHATCCILISSVYE 954 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~g~---~p~~~~~~~ll~~~~~ 954 (1012)
.|+++.|.+.|+..+...+ ......-..|++.|.-..++++|+.+..+=+. +.+ --.--.||.+..+|..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8888888888877655421 12345566678888888888888876655322 101 1223455666666778
Q ss_pred cCCHHHHHHHHHHHHH
Q 001797 955 AGNIDKATRFLESMIK 970 (1012)
Q Consensus 955 ~g~~~~A~~~~~~~~~ 970 (1012)
.|..++|..+.+.-++
T Consensus 328 lg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLR 343 (639)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8888888877776666
No 149
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.03 E-value=0.028 Score=59.13 Aligned_cols=483 Identities=13% Similarity=0.144 Sum_probs=224.0
Q ss_pred HHHHhcCChhHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 001797 163 DGYRKIGFLDDAAIVFFGVVKDGGSVPG----LLCCNSILNDLLRANKLKLFWKVYDVMLEA-KVTPDVYTYTSLINAHF 237 (1012)
Q Consensus 163 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~ 237 (1012)
-.+.+++++.+|..+|.++..+....|. ....+.+++++.-. +.+.......+..+. |..+-...+ ..-.+.
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF--~~L~~Y 90 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLF--KALVAY 90 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHH--HHHHHH
Confidence 3467899999999999998655544443 55678888888754 344444444444433 222212222 222235
Q ss_pred hcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCH
Q 001797 238 RAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLK----LNPNE 313 (1012)
Q Consensus 238 ~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~ 313 (1012)
+.|.+++|.+.|..-.++..+..- -+.+.=.. ..-+|-+.-+..+..+...|++.+++.+++++...- +..+.
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~--~~Ld~ni~-~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTES--PWLDTNIQ-QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhccccc--chhhhhHH-HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 888899888877654332000000 00000000 011344555667788889999999999988887643 34788
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 001797 314 VVYTTLINGFMKQGNLQEAFRLKNEMVT---FGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLI 390 (1012)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 390 (1012)
.+|+.++-.+.+ ..|-++.+ .++-| -|.-+|-.|.+.=..- +.-.=..+.|.......++
T Consensus 168 d~yd~~vlmlsr--------SYfLEl~e~~s~dl~p---dyYemilfY~kki~~~------d~~~Y~k~~peeeL~s~im 230 (549)
T PF07079_consen 168 DMYDRAVLMLSR--------SYFLELKESMSSDLYP---DYYEMILFYLKKIHAF------DQRPYEKFIPEEELFSTIM 230 (549)
T ss_pred HHHHHHHHHHhH--------HHHHHHHHhcccccCh---HHHHHHHHHHHHHHHH------hhchHHhhCcHHHHHHHHH
Confidence 888876655543 23444432 22233 2455555665431111 1111011234333333333
Q ss_pred HHHHhc--CCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHH
Q 001797 391 EGCYRE--NNMAKAYELLVDMKKRNLSPTA-YTCNVIINGLCRCSDLEGACRVFEEMIACGLKP----NNFVYTTLIQAH 463 (1012)
Q Consensus 391 ~~~~~~--g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~ 463 (1012)
....-. .+..--+++++.-...-+.|+. .....+..-+.+ +.+++..+-+.+....+.+ =..++..++...
T Consensus 231 qhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~ 308 (549)
T PF07079_consen 231 QHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFK 308 (549)
T ss_pred HHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 332211 1111112222222222223332 222233333332 4455544444443321111 123566666666
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 001797 464 LRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAAD 543 (1012)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 543 (1012)
.+.++...|.+.+.-+... .|+...-..+ --..+.+..|... |...++. ...-+
T Consensus 309 Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kl----------lls~~~lq~Iv~~----DD~~~Tk----------lr~yL 362 (549)
T PF07079_consen 309 VKQVQTEEAKQYLALLKIL--DPRISVSEKL----------LLSPKVLQDIVCE----DDESYTK----------LRDYL 362 (549)
T ss_pred HHHHhHHHHHHHHHHHHhc--CCcchhhhhh----------hcCHHHHHHHHhc----chHHHHH----------HHHHH
Confidence 7777777777776655543 2322211111 0011111122111 1111111 11112
Q ss_pred HHHHHHHHCCCCCCH-HHH-HHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHH---hcCCHHHHH
Q 001797 544 RYFQEMLNCGIAPND-IIY-TTLIDGHCKEGN-VKEAFSTFRCMLGRGILPDLKTYSVLI----HGLS---RCGKIHEAL 613 (1012)
Q Consensus 544 ~~~~~~~~~~~~~~~-~~~-~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~---~~g~~~~A~ 613 (1012)
.++++....++.... +.| ..-..-+-+.|. -++|+.+++.++.-. +-|...-|.+. ..|. ....+..-+
T Consensus 363 ~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 363 NLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 222222222111000 001 011112223333 444555554444321 11222222111 1111 123344444
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 001797 614 EVFSELQDKGLVPD----VITYSSLISG--FCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFD 687 (1012)
Q Consensus 614 ~~~~~~~~~~~~~~----~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 687 (1012)
++-+-+.+.|+.|- ...-|.+.++ +...|++.++.-.-..+.+ +.|++.+|..++-++....++++|..++.
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555556666653 2334444444 4567888887665555554 46788888887777777888888888877
Q ss_pred HHHhCCCCCCHHHHHHH
Q 001797 688 GIFAKGLTPTVVTYTTI 704 (1012)
Q Consensus 688 ~~~~~~~~p~~~~~~~l 704 (1012)
.+ +|+..+++.-
T Consensus 520 ~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 520 KL-----PPNERMRDSK 531 (549)
T ss_pred hC-----CCchhhHHHH
Confidence 65 4566555543
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00012 Score=78.64 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 001797 806 TILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE 885 (1012)
Q Consensus 806 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 885 (1012)
..|+..+...++++.|+.+++++.+. .|+ ....++..+...++-.+|.+++++.+.. .+-+...+...+..|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 34444555566777777777776653 243 2334566666666666777777766642 112445555555666677
Q ss_pred CChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 886 GNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 886 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
++++.|+++.+++.... |.+..+|..|+.+|...|++++|+-.+..+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777664 5556667777777777777777776666553
No 151
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.99 E-value=0.034 Score=58.59 Aligned_cols=206 Identities=15% Similarity=0.145 Sum_probs=118.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh------hHHHHHHHHH----hcCcHHHHHHHHHHHHhCCCCCC-HH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS------SFNALLNGLC----KSQKIFEANKLLEDMADKHITPN-HV 803 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~-~~ 803 (1012)
++..++....+.++..+|...+..+.-.+|.... +-..+.++.| ...+..+=+.+++.....++... .+
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLv 379 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLV 379 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 4555555566666666666666655555554331 1112333333 12233344555555554332211 11
Q ss_pred HH-HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHHH----HHHHc---cCChhHHHHHHHHHHHcCCCC----
Q 001797 804 TY-TILIDYHCKAGT-MKDAEHLLVEMQKRVLKPNFRTYTSLL----HGYAG---IGKRSEMFALFDEMVERGVEP---- 870 (1012)
Q Consensus 804 ~~-~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p---- 870 (1012)
.| ..-+.-+.+.|. -++|+.+++.+++. .+-|...-+.+. ..|.. .....+-.++-+-+.+.|+.|
T Consensus 380 h~L~~~Ak~lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~ 458 (549)
T PF07079_consen 380 HYLVFGAKHLWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITIS 458 (549)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccccc
Confidence 11 122334567776 78888998888763 122443333322 22211 223344444444444567777
Q ss_pred CHHHHHHHHH--HHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 001797 871 DGVIYSMMVD--AYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 871 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 948 (1012)
+.+.-+.|.+ -+...|++.++.-.-.-+.+-. |++.+|..+|-++....++++|...+.++ +|+...+..-
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--PS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dsk 531 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--PSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSK 531 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHH
Confidence 3455666663 4678899999988777666654 79999999999999999999999998764 5666655444
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=2.5e-05 Score=64.62 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=45.2
Q ss_pred cCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHH
Q 001797 885 EGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKAT 962 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~ 962 (1012)
.|++++|+.+++++.+.... ++...+..++.++...|++++|++++++ .+ ..|.+....++++. +.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45666666666666666411 1344555566666666777666666666 22 34555444444433 66667777776
Q ss_pred HHHHH
Q 001797 963 RFLES 967 (1012)
Q Consensus 963 ~~~~~ 967 (1012)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=0.00013 Score=78.97 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=79.9
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcccc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
+..+...|++++|+.+|+++++ ..| +...|..++.+|...|++++|+..+++++... |.+..+|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 4556677888888888888886 444 56677777888888888888888888888876 5677888888888888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 923 FYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 923 ~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
+++|+..++++++ +.|+++.....+..
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 8888888888887 67877766655533
No 154
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.94 E-value=9.3e-05 Score=75.50 Aligned_cols=287 Identities=14% Similarity=0.092 Sum_probs=158.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHH--hC--CCC-CCHHHHHHHHH
Q 001797 636 SGFCKQGFIKEAFQLHEKMCESGITPNIV----TYNALIDGLCKSGELERARELFDGIF--AK--GLT-PTVVTYTTIID 706 (1012)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~~-p~~~~~~~li~ 706 (1012)
.-+|+.|+......+|+..++.|.+ |.. +|..|.++|.-.+++++|+++-..=+ .+ |-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3589999999999999999998744 433 46778888888899999988754322 11 110 01122333455
Q ss_pred HHHHcCCHHHHHHHHHHhh----hCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHH
Q 001797 707 GYCKSGNLTEAFQLVNEMP----SRGV-TPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLC 778 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~----~~~~-~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~ 778 (1012)
.+--.|.+++|+-...+-. +.|- ......+..+.+.|...|+--... ...+.+..+. .++..-+..|.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHHHHHHHHHHHHHHH
Confidence 5666788888876654432 2111 112335556666665554310000 0000010011 11111111111
Q ss_pred hcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-ChHHHHHHHHHHHccCCh
Q 001797 779 KSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQ----KRVLKP-NFRTYTSLLHGYAGIGKR 853 (1012)
Q Consensus 779 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~ 853 (1012)
+-+++.+.+-+.+ ..-..|..|.+.|.-.|+++.|+..-+.-+ +.|-.. ....+..+.+++.-.|++
T Consensus 180 ------eNL~l~~~lgDr~--aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~f 251 (639)
T KOG1130|consen 180 ------ENLELSEKLGDRL--AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNF 251 (639)
T ss_pred ------HHHHHHHHhhhHH--hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhccc
Confidence 1111111111110 112356666666667777777776554322 222222 223566777777778888
Q ss_pred hHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CccCHHHHHHHHHHHhccccH
Q 001797 854 SEMFALFDEMVE----RGVE-PDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG-----LVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 854 ~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
+.|.+.|+..+. .|-. ......+.|++.|.-..++++|+.+.++-+... ......++..|++++-..|..
T Consensus 252 e~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 252 ELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEH 331 (639)
T ss_pred HhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhH
Confidence 888877776542 2222 134566677777777778888888776654431 112456777788888888888
Q ss_pred HHHHHHHHHHhh
Q 001797 924 YKVLKLLDEMGD 935 (1012)
Q Consensus 924 ~~A~~~~~~~~~ 935 (1012)
++|..+.+..++
T Consensus 332 ~kAl~fae~hl~ 343 (639)
T KOG1130|consen 332 RKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
No 155
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.0015 Score=59.57 Aligned_cols=128 Identities=9% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc--cCHHHH
Q 001797 833 LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV--LNQNVY 910 (1012)
Q Consensus 833 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~ 910 (1012)
..|....-..|..+..+.|++.||...|++.+.--..-|......+.++....++...|...++++.+-+ | .++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-PAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-CccCCCCch
Confidence 3455555556677777777777777777777652233366666667777777777777777777776654 2 223445
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATR 963 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 963 (1012)
..++..+...|++++|+..++.+.+ +.|+..........+.++|+.++|..
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 5667777777777777777777776 56665544444444667776655543
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00049 Score=73.99 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 001797 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDG 747 (1012)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g 747 (1012)
.|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|++++++.+.. .+-+...+......|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 34444445566666666666666552 332 233555555566666666666666643 2224444444455556666
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDM 793 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 793 (1012)
+++.|+.+.+++++..|....+|..|+.+|.+.|++++|+..++.+
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 6666666666666666666666666666666666666666655554
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.91 E-value=2e-05 Score=65.17 Aligned_cols=81 Identities=17% Similarity=0.351 Sum_probs=52.0
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHH
Q 001797 850 IGKRSEMFALFDEMVERGV-EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLK 928 (1012)
Q Consensus 850 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 928 (1012)
.|++++|+.+++++++... .|+...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677777777777776322 12445555677777788888888877777 3332 2344555566777788888888877
Q ss_pred HHHH
Q 001797 929 LLDE 932 (1012)
Q Consensus 929 ~~~~ 932 (1012)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 158
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.90 E-value=0.00046 Score=77.97 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=99.8
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHcc--------CChhHHHHHHHHH
Q 001797 798 ITPNHVTYTILIDYHCK--A---GTMKDAEHLLVEMQKRVLKPN-FRTYTSLLHGYAGI--------GKRSEMFALFDEM 863 (1012)
Q Consensus 798 ~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 863 (1012)
.+.+...|...+.+... . +..++|..+|+++.+ ..|+ ...|..+..++... ++...+.+...+.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34455566655555322 2 235567777777765 3443 33444444433222 1233444444444
Q ss_pred HHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCH
Q 001797 864 VERG-VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSH 942 (1012)
Q Consensus 864 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 942 (1012)
.... ...++..+..++-.....|++++|...+++++..+ |+...|..++.++...|+.++|.+.+.++.. +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 4322 22356778878777777899999999999999997 5888999999999999999999999999998 88999
Q ss_pred HHHHHHHHH
Q 001797 943 ATCCILISS 951 (1012)
Q Consensus 943 ~~~~~ll~~ 951 (1012)
+++++.=+.
T Consensus 487 pt~~~~~~~ 495 (517)
T PRK10153 487 NTLYWIENL 495 (517)
T ss_pred chHHHHHhc
Confidence 987665443
No 159
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.86 E-value=0.063 Score=59.31 Aligned_cols=379 Identities=14% Similarity=0.139 Sum_probs=200.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-CCCC--------chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 001797 486 PDVFCYNSLISGLCKAKKMEDARSCLVEMTAN-GLKP--------NLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAP 556 (1012)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 556 (1012)
|.+..|..+.......-.++-|...|-+.... |++. +...-.+-+.+| -|++++|.+++-++-+..
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 55666776666665655666666666544321 1110 000001112222 378888888887765432
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 001797 557 NDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR-GILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLI 635 (1012)
Q Consensus 557 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 635 (1012)
..|..+.+.|++-...++++.--.. .-..-..+++.+...+.....+++|.+.|..-... ...+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 2455667777777666655431110 00111356888888888888899999888764321 2356
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 001797 636 SGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLT 715 (1012)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 715 (1012)
.++.+..++++-..+...+ +.+....-.+.+++...|.-++|.+.|-+.. .|. ..+..|...++|.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHH
Confidence 6777777776655554443 4455667788899999999999988775432 122 2345677888999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHH
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTL-VDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMA 794 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 794 (1012)
+|.++.++.. -|...++.+- ..-+...++.-+|++. +-+.|+.-+|.+++.+|.
T Consensus 896 ~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~---------------------~Rka~~~~daarll~qma 950 (1189)
T KOG2041|consen 896 EAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEK---------------------DRKAGRHLDAARLLSQMA 950 (1189)
T ss_pred HHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHH---------------------hhhcccchhHHHHHHHHh
Confidence 9999887754 2333333221 1112333444444443 344566666666666665
Q ss_pred hC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCC
Q 001797 795 DK----HITPNHV-TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVE 869 (1012)
Q Consensus 795 ~~----~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 869 (1012)
+. +.++-.. -...|...+ ..+..++.+-.++....|...+... +...|-..++-.+.+..-. |
T Consensus 951 e~e~~K~~p~lr~KklYVL~AlL--vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g-- 1018 (1189)
T KOG2041|consen 951 EREQEKYVPYLRLKKLYVLGALL--VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G-- 1018 (1189)
T ss_pred HHHhhccCCHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--
Confidence 42 2222111 111111111 1122333333333333332222211 1111222222222221110 0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 870 PDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR-GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 870 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
....++..|++-....|..+.|++..-.+..- .+-|...+|..|+-+-+....+--.-+.+-++.+
T Consensus 1019 AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1019 AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 12233444455566678888887765444332 2346678888888887777777766666666544
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.00032 Score=62.91 Aligned_cols=102 Identities=12% Similarity=0.042 Sum_probs=54.3
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--ccCHHHHHHHHH
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVE-P-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL--VLNQNVYTSLAN 915 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 915 (1012)
+..++..+...|++++|.+.|.++++.... | ....+..++.++.+.|++++|+..++.+..... +....++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555555566666666666666542110 1 123444555666666666666666666655430 112345556666
Q ss_pred HHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 916 SLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 916 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
++.+.|++++|.+.++++.+ ..|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~--~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK--RYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH--HCcCCh
Confidence 66666666666666666655 345444
No 161
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=5.4e-05 Score=58.98 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=45.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
++..+...|++++|++.+++++... |.+..++..++.++...|++++|+..++++++ ..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCC
Confidence 4566777777888888887777775 55677777777777788888888877777776 566654
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00017 Score=71.52 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=84.9
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 707 GYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
-+.+.+++.+|+..|.+.++. .+-|.+-|..-..+|.+.|.++.|++-.+.++..+|....+|..|+.+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 356788999999999999985 2346677888888999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH
Q 001797 787 NKLLEDMADKHITPNHVTYTILI 809 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~~~~l~ 809 (1012)
.+.|++.++ +.|+..+|..=+
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 999999888 778777665433
No 163
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.81 E-value=0.0046 Score=56.56 Aligned_cols=136 Identities=10% Similarity=0.024 Sum_probs=98.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHH
Q 001797 798 ITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYS 876 (1012)
Q Consensus 798 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 876 (1012)
+.|+...-..|..++.+.|++.||...|++...--+..|......+.++....++..+|...+++..+....- .+....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 3455555567778888888888888888887764455577777788888888888888888888887632110 234455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.++..|...|++.+|...++.+.+.- |++..-...+..+.++|+..+|..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66778888888888888888888774 5666666667778888888877776666544
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00075 Score=64.99 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=42.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|+..+++++... |.+...+..++.++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 33344444444444444444444443211111 1334444444444455555555444444442 23344444444444
Q ss_pred hcccc--------------HHHHHHHHHHHhh
Q 001797 918 CKEEE--------------FYKVLKLLDEMGD 935 (1012)
Q Consensus 918 ~~~g~--------------~~~A~~~~~~~~~ 935 (1012)
...|+ +++|.+.++++..
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 44444 4555566665554
No 165
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.78 E-value=3.1e-05 Score=51.39 Aligned_cols=33 Identities=39% Similarity=0.811 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPN 312 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 312 (1012)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666665554
No 166
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00028 Score=60.08 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=48.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 840 YTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 840 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
+..++..+...|++++|...++++++ ..| +...+..++.++...|++++|.+.+++..... +.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 33444555555556666655555554 222 23444455555555555555555555555543 333445555555555
Q ss_pred ccccHHHHHHHHHHHhh
Q 001797 919 KEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~ 935 (1012)
..|++++|.+.+.++.+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 55555555555555543
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.77 E-value=0.00032 Score=59.71 Aligned_cols=93 Identities=15% Similarity=0.235 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHH
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS-SVY 953 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~-~~~ 953 (1012)
+..++..+...|++++|...++++.+.. |.+...+..++.++...|++++|.+.++++.+ ..|..+..+..++ .+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE--LDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHH
Confidence 4445555666666666666666666654 33445566666666666666666666666655 3444443333333 355
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001797 954 EAGNIDKATRFLESMIK 970 (1012)
Q Consensus 954 ~~g~~~~A~~~~~~~~~ 970 (1012)
..|++++|...++..++
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 66666666666666554
No 168
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.77 E-value=8.1e-05 Score=58.68 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=52.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
.+.|++++|++.++++.... |.+..++..++.+|.+.|++++|.+.++++.. ..|+++.++.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHHh
Confidence 56788888888888888886 66788888888888888888888888888877 5788777776654
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.77 E-value=0.0043 Score=62.94 Aligned_cols=176 Identities=11% Similarity=0.090 Sum_probs=92.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchh---hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 001797 740 VDGCCRDGNMEKALSLFLEMVQKGLASTS---SFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK-- 814 (1012)
Q Consensus 740 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 814 (1012)
...+...|++++|.+.|+.++...|.++. +...++.+|.+.+++++|...+++.++.........|.....+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 33444566666666666666666665552 2345566666666666666666666653221111222222222211
Q ss_pred c------------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 001797 815 A------------------GTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYS 876 (1012)
Q Consensus 815 ~------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 876 (1012)
. ....+|+..|+++++. -|+. .-..+|...+..+... =...-.
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHHHH
Confidence 1 1123444555555542 2322 2233444333333210 011222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRG--LVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
..+..|.+.|.+..|+.-++.+++.- .+....+...++.+|.+.|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 45567778888888888888888762 22335666677777878888877777766553
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.00034 Score=75.78 Aligned_cols=101 Identities=11% Similarity=0.086 Sum_probs=87.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhc
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEA 955 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~ 955 (1012)
..+..+...|++++|++.|++++... |.+...|..++.++...|++++|+..++++++ +.|+++..+..++. +...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHh
Confidence 44567788999999999999999987 77899999999999999999999999999998 78988877777666 8899
Q ss_pred CCHHHHHHHHHHHHHCCCccChhHHHH
Q 001797 956 GNIDKATRFLESMIKFGWVADSTVMMD 982 (1012)
Q Consensus 956 g~~~~A~~~~~~~~~~g~~~~~~~~~~ 982 (1012)
|++++|+..|++.++.. |+...+..
T Consensus 84 g~~~eA~~~~~~al~l~--P~~~~~~~ 108 (356)
T PLN03088 84 EEYQTAKAALEKGASLA--PGDSRFTK 108 (356)
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 99999999999999865 54444433
No 171
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.74 E-value=4e-05 Score=50.85 Aligned_cols=31 Identities=58% Similarity=1.032 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001797 351 YNALIGGICKAGEIEKAKGLMTEMLRLGINP 381 (1012)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (1012)
||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3333333444444444444444433333333
No 172
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.0008 Score=60.26 Aligned_cols=92 Identities=17% Similarity=0.064 Sum_probs=36.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHH
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHIT--PNHVTYTILIDYHC 813 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~ 813 (1012)
++..+...|++++|.+.|+.+++..|.+. .++..++.++.+.|++++|...++.+...... .....+..++.++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33334444444444444444444333321 23333444444444444444444444332100 01223333344444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~ 830 (1012)
+.|+.++|...++++.+
T Consensus 88 ~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIK 104 (119)
T ss_pred HhCChHHHHHHHHHHHH
Confidence 44444444444444443
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.0014 Score=74.15 Aligned_cols=135 Identities=11% Similarity=0.063 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC--------cHHHHHHHHHHHHh
Q 001797 729 VTPDNFVYCTLVDGCCR--D---GNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ--------KIFEANKLLEDMAD 795 (1012)
Q Consensus 729 ~~pd~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~ 795 (1012)
.+.+...|..++.+... . ++.++|+.+|+++++.+|....++..++.+|.... ++..+.+...+...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45566677777666432 2 23678889999999998888877777666554321 12223333333222
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 796 K-HITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 796 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
. ..+.++..|..+.-.....|++++|...++++++. .|+...|..++..+...|+.++|.+.++++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 11223344554544444455566666555555542 34555555555555555666655555555553
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=0.00015 Score=57.31 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc-cHHHHHHHHHHHhh
Q 001797 872 GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE-EFYKVLKLLDEMGD 935 (1012)
Q Consensus 872 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 935 (1012)
+..|..++..+...|++++|+..|+++++.. |.+..+|..++.++...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3455555666666666666666666666654 445556666666666666 56666666666554
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.66 E-value=0.017 Score=58.61 Aligned_cols=176 Identities=14% Similarity=0.103 Sum_probs=112.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-H---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHH
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-V---YCTLVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLN 775 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~ 775 (1012)
.....+...|++++|++.|+++... .|+.. . ...++.++.+.+++++|...+++.++..|.++ .++..++.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3445556788888888888888774 33322 2 24556777888899999999999988888766 34444444
Q ss_pred HHHhcC---------------c---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 001797 776 GLCKSQ---------------K---IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNF 837 (1012)
Q Consensus 776 ~~~~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 837 (1012)
++...+ + ..+|.+.|+++++. -|+. .-..+|...+..+... + .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-l---a 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-L---A 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-H---H
Confidence 332221 1 24555666666653 2333 2234444444333321 0 0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVER--GVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF 899 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 899 (1012)
..-..++..|.+.|.+..|..-++.+++. +.....+....++.+|.+.|..++|.++...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 11225677788999999999999999972 222245677788899999999999998876654
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.002 Score=56.49 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc---CHHHHHHHHHHH
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL---NQNVYTSLANSL 917 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~ 917 (1012)
+.+++...|+.++|+.+|++.++.|+.+. ...+..++..|...|++++|..++++..... |. +......++.++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 44555556666666666666666554432 2334455566666666666666666665542 22 333444445556
Q ss_pred hccccHHHHHHHHHHHh
Q 001797 918 CKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 918 ~~~g~~~~A~~~~~~~~ 934 (1012)
...|+.++|++++...+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665543
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0019 Score=64.76 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc---cHHHHHHHHHHHhhCCCCCCHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE---EFYKVLKLLDEMGDKEIKLSHATCCI 947 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~ 947 (1012)
|...|..|+..|...|+...|...|.++.... ++++..+..++.++..+. ...++..++++++. .+|++....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHHH
Confidence 66677777777777777777777777777765 566777777776655443 34566777777776 5677766666
Q ss_pred HHHH-HHhcCCHHHHHHHHHHHHHCC
Q 001797 948 LISS-VYEAGNIDKATRFLESMIKFG 972 (1012)
Q Consensus 948 ll~~-~~~~g~~~~A~~~~~~~~~~g 972 (1012)
+++. +..+|++.+|...++.|++..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6555 677777777777777777754
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.59 E-value=0.011 Score=58.60 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=85.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCK- 814 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 814 (1012)
.+..+...|++.+|+..|+.+....|.++ .+...++.++.+.|++++|...+++.++.........+.....+.+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777777776666544 55666677777777777777777776653211111112211111111
Q ss_pred ------------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 001797 815 ------------AGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAY 882 (1012)
Q Consensus 815 ------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 882 (1012)
.+...+|...|+.++ .-|-......+|...+..+.+. =...-..++..|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 112233344443333 3333344444555444443321 011223356777
Q ss_pred HhcCChHHHHHHHHHHHHcCCccC---HHHHHHHHHHHhccccHHHHH
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLVLN---QNVYTSLANSLCKEEEFYKVL 927 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 927 (1012)
.+.|.+..|..-++.+++.- |.+ ..+...++.++.+.|..+.|.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78888888888888877773 322 344556667777777766443
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.58 E-value=0.00097 Score=63.96 Aligned_cols=92 Identities=13% Similarity=0.083 Sum_probs=54.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP--DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANS 916 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 916 (1012)
.|..++..+...|++++|...|++++.....| ...++..++.++...|++++|++.+++++... |.....+..++.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 45555666666677777777777666422122 12356666677777777777777777776653 3445555555555
Q ss_pred Hh-------ccccHHHHHHHHH
Q 001797 917 LC-------KEEEFYKVLKLLD 931 (1012)
Q Consensus 917 ~~-------~~g~~~~A~~~~~ 931 (1012)
+. +.|++++|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 55 6666664444433
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.57 E-value=0.0062 Score=63.94 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHh
Q 001797 156 VVFEMLIDGYRKIGFLDDAAIVFFGV 181 (1012)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~f~~~ 181 (1012)
..|.--...|...|++++|.+.|.++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHH
Confidence 45666667777788888888888776
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0079 Score=63.15 Aligned_cols=129 Identities=15% Similarity=0.208 Sum_probs=78.8
Q ss_pred HHHHHHHHHcc-CChhHHHHHHHHHHHc-CC--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-----cCH-
Q 001797 840 YTSLLHGYAGI-GKRSEMFALFDEMVER-GV--EP--DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-----LNQ- 907 (1012)
Q Consensus 840 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~-~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~- 907 (1012)
+..++..|... |++++|+++|+++.+. .. .+ -...+..++..+.+.|++++|++.|+++...... .+.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 34455667777 8999999999988862 11 11 1245667778899999999999999999876422 112
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCH--HHHHHHHHH---HHhcCC---HHHHHHHHHHHHH
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSH--ATCCILISS---VYEAGN---IDKATRFLESMIK 970 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~ll~~---~~~~g~---~~~A~~~~~~~~~ 970 (1012)
..+...+-++...||...|.+.+++... ..|.- +.-..++.. -++.|+ +++|..-|+++.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 2344556678889999999999999876 44422 111223333 234444 5556666655433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0015 Score=57.34 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC--HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC---HHHHHHH
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN--QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS---HATCCIL 948 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l 948 (1012)
....+++++-..|+.++|+.+|++.+..|.... ...+..++..+...|++++|..++++... -.|+ +......
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~--~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE--EFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCccccHHHHHH
Confidence 455678889999999999999999999986543 56788899999999999999999999987 3466 3333333
Q ss_pred HH-HHHhcCCHHHHHHHHHHHHH
Q 001797 949 IS-SVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 949 l~-~~~~~g~~~~A~~~~~~~~~ 970 (1012)
+. .+...|++++|.+.+-..+-
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 37899999999999877664
No 183
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.51 E-value=0.00014 Score=47.79 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 001797 279 FTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNP 311 (1012)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 311 (1012)
.+|+.++.+|++.|+++.|..+|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355556666666666666666666665555544
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.51 E-value=0.002 Score=61.86 Aligned_cols=62 Identities=11% Similarity=-0.013 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 769 SFNALLNGLCKSQKIFEANKLLEDMADKHITP--NHVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 769 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
.+..++..+...|++++|...|++.+.....+ ...++..+...+...|++++|+..+++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555554321111 112445555555555555555555555543
No 185
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.49 E-value=0.00016 Score=47.44 Aligned_cols=30 Identities=43% Similarity=0.623 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 350 TYNALIGGICKAGEIEKAKGLMTEMLRLGI 379 (1012)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 379 (1012)
+|+.++.+|++.|+++.|..+|++|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444444333
No 186
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.44 E-value=0.0049 Score=59.31 Aligned_cols=91 Identities=15% Similarity=0.129 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 001797 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPD--NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNG 776 (1012)
Q Consensus 699 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 776 (1012)
..+..+...+...|++++|...+++.......+. ...+..+...+...|++++|...++++++..|.....+..++..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3455555666667777777777777665322221 24566667777777777777777777777777766777777777
Q ss_pred HHhcCcHHHHHHH
Q 001797 777 LCKSQKIFEANKL 789 (1012)
Q Consensus 777 ~~~~g~~~~A~~~ 789 (1012)
|...|+...+..-
T Consensus 116 ~~~~g~~~~a~~~ 128 (172)
T PRK02603 116 YHKRGEKAEEAGD 128 (172)
T ss_pred HHHcCChHhHhhC
Confidence 7777765554433
No 187
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.32 Score=54.06 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=116.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 001797 450 KPNNFVYTTLIQAHLRQNRFEEAINILKGMTGK-GVLP--------DVFCYNSLISGLCKAKKMEDARSCLVEMTANGLK 520 (1012)
Q Consensus 450 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 520 (1012)
.|.+..|..|...-.+.-.++-|...|-+...- |+.. +...-..-+.+| -|++++|.++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 466667776666655555666666655443321 1110 001111112232 478889988887776652
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 001797 521 PNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPN----DIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTY 596 (1012)
Q Consensus 521 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 596 (1012)
..+..+.+.|++-...++++.- |-..| ..+|+.+.+.+.....+++|.+.|..-...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 2355666778887766665431 11111 357888888888888888888887654321
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 001797 597 SVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKS 676 (1012)
Q Consensus 597 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 676 (1012)
...+.++.+...+++-..+-..+.+ +....-.+.+.+...|.-++|.+.|-+. + .|. ..+..|...
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~L 891 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVEL 891 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHH
Confidence 2345566666666655554444332 4455666777788888888877666432 2 111 334556666
Q ss_pred CCHHHHHHHHHHH
Q 001797 677 GELERARELFDGI 689 (1012)
Q Consensus 677 g~~~~A~~~~~~~ 689 (1012)
+++.+|.++-+..
T Consensus 892 nQW~~avelaq~~ 904 (1189)
T KOG2041|consen 892 NQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777665543
No 188
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00017 Score=46.20 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYDLK 308 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 308 (1012)
+||+++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00077 Score=53.20 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-cHHHHHHHHHHHHh
Q 001797 732 DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ-KIFEANKLLEDMAD 795 (1012)
Q Consensus 732 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 795 (1012)
+..+|..+...+...|++++|+..|+++++.+|....++..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566677777777777777777777777777777777777777777777 67777777777665
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=97.36 E-value=0.0016 Score=59.32 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=42.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNI 958 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~ 958 (1012)
.-+...|++++|..+|+-+.-.+ +.++..|..|+.++...+++++|+..|..+.. +.+++|......+. +...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCCH
Confidence 33444555555555555444443 33444455555555555555555555555443 33333333333322 4455555
Q ss_pred HHHHHHHHHHHH
Q 001797 959 DKATRFLESMIK 970 (1012)
Q Consensus 959 ~~A~~~~~~~~~ 970 (1012)
++|+..|+.+++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.33 E-value=0.0036 Score=65.33 Aligned_cols=130 Identities=12% Similarity=0.152 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 001797 699 VTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCR-DGNMEKALSLFLEMVQKGLASTSSFNALLNGL 777 (1012)
Q Consensus 699 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 777 (1012)
.+|..++...-+.+..+.|..+|.+..+.+ ..+..+|...+..-.. .++.+.|..+|+..++..+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777777777788888888777532 2234455555444333 45666688888887777777777777777777
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 778 CKSQKIFEANKLLEDMADKHITPNH---VTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
.+.|+.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+...++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777664 33322 3677777777777777777777777766
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.32 E-value=0.00075 Score=52.48 Aligned_cols=56 Identities=14% Similarity=0.198 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 740 VDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 740 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
...+...|++++|+..|+++++..|.+..++..++.++...|++++|...|+++++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666666655
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0092 Score=60.02 Aligned_cols=110 Identities=13% Similarity=0.045 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHH
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAG---TMKDAEHLLVEMQK 830 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 830 (1012)
.-++.-+..+|.+...|..|+..|...|+...|...|.+..+. -++++..+..+..++.... ...++..+|++++.
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 3344445555555555666666666666666665555555543 2234444444444432211 23445555555554
Q ss_pred CCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 831 RVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 831 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
. -+.|..+...|...+...|++.+|...++.|++
T Consensus 222 ~-D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 222 L-DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred c-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 2 122333444444555555555555555555554
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.31 E-value=0.0011 Score=53.13 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=49.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILI 949 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 949 (1012)
..|...+++++|.+.+++++..+ |.++..|...+.++...|++++|.+.++++++ ..|+++....+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHHH
Confidence 45677788888888888888775 66777777788888888888888888888777 567666655443
No 195
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.30 E-value=0.00028 Score=45.09 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001797 315 VYTTLINGFMKQGNLQEAFRLKNEMVTFG 343 (1012)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (1012)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44445555555555555555554444443
No 196
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.29 E-value=0.0036 Score=67.72 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHH
Q 001797 276 PDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDL--KLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNA 353 (1012)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 353 (1012)
-+.+....+++.+....+++++..++.+.... ...--..|..++|..|.+.|..++++.++..=...|+-||.+++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 35666777788877778888888888888764 1222334567888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 001797 354 LIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRE 396 (1012)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 396 (1012)
|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888776666666766666665544
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.29 E-value=0.33 Score=51.23 Aligned_cols=131 Identities=18% Similarity=0.264 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHH
Q 001797 698 VVTYTTIIDGYCKSGNLTEAFQLVNEMPSRG-VTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNG 776 (1012)
Q Consensus 698 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 776 (1012)
...|...++.-.+..-++.|..+|-+..+.+ +.++..++++++.-+ ..|+..-|..+|+.-+...++++.-.+.....
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4566777777777777888888888888877 556667788887755 45778888888888888777777555666667
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 777 LCKSQKIFEANKLLEDMADKHITPN--HVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 777 ~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
+...++-+.|..+|+..+++ +..+ ...|..+++.-..-|++..+..+-+++.+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77788888888888866543 3333 45788888888888888888888777765
No 198
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.26 E-value=0.0037 Score=67.63 Aligned_cols=121 Identities=17% Similarity=0.180 Sum_probs=67.7
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTF--GIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYN 387 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 387 (1012)
+.+.+....+++.+....+++++..++-+.... ....-..|..++|..|.+.|..+++..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555556666665556666666666555442 111122344466666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001797 388 SLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430 (1012)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 430 (1012)
.|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666665555544454554444444433
No 199
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.24 E-value=0.038 Score=54.68 Aligned_cols=169 Identities=18% Similarity=0.140 Sum_probs=74.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 001797 598 VLIHGLSRCGKIHEALEVFSELQDKGLVP--DVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCK 675 (1012)
Q Consensus 598 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 675 (1012)
.....+...|++.+|...|+.+....+.. .......++.++.+.|++++|...++++++..+......+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 33444555666666666666665442211 1233444555666666666666666666654322222222222211111
Q ss_pred c-------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 001797 676 S-------------GELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDG 742 (1012)
Q Consensus 676 ~-------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~ 742 (1012)
. +...+|...|+.++ .-|=......+|...+..+... + ...-..++.-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHH
Confidence 0 11222333333332 2222333334444333333221 0 0011224455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~ 785 (1012)
|.+.|.+..|..-++.+++..|... .+...++.+|.+.|..+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 6666777777777777777666655 455556666666666553
No 200
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.005 Score=64.16 Aligned_cols=95 Identities=11% Similarity=0.069 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV 952 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 952 (1012)
..+.+++-+|.+.+++.+|++..++++... |+|..++..-+.++...|+++.|+..|+++++ +.|++.....-+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 467788899999999999999999999998 78999999999999999999999999999999 899998877766664
Q ss_pred Hhc--CCHHHHHHHHHHHHH
Q 001797 953 YEA--GNIDKATRFLESMIK 970 (1012)
Q Consensus 953 ~~~--g~~~~A~~~~~~~~~ 970 (1012)
.+. ...+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 432 234556788888887
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.001 Score=52.25 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=44.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHH
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTY 805 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 805 (1012)
...|++++|++.|+++++..|.+..++..++.+|.+.|++++|.++++++... .|+...|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHH
Confidence 35677888888888888888887777778888888888888888888887763 4553333
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.26 Score=48.18 Aligned_cols=146 Identities=12% Similarity=0.018 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCHHHHHHH
Q 001797 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER-----GVEPDGVIYSMM 878 (1012)
Q Consensus 804 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l 878 (1012)
..++++..+.-.|.+.-...++.+..+...+.++.....|++.-.+.|+.+.|..+|+...+. ++.-...+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344566666666777777777777777544556667777777777888888888777755431 222223333444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISSV 952 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~ 952 (1012)
...+.-++++.+|...+.+++..+ +.++..-++-+-++.-.|+..+|++..+.+.+ ..|.+.....++-++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNL 329 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHH
Confidence 456667778888888888888776 55677777777777778888888888888877 567776666555443
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.0068 Score=63.33 Aligned_cols=129 Identities=11% Similarity=0.077 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 001797 665 TYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCK-SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743 (1012)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~ 743 (1012)
+|..++....+.+..+.|+.+|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555566666666555331 1122333333333222 34444466666655544 444445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 744 CRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
...++.+.|+.+|++.+..-+... ..|...+..-.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555566666666665555433222 3555555555555665555555555554
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0066 Score=62.04 Aligned_cols=93 Identities=6% Similarity=0.026 Sum_probs=56.7
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CccCHHHHHHHHHHHhcc
Q 001797 847 YAGIGKRSEMFALFDEMVERGVEPD----GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG--LVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 920 (1012)
..+.|++++|+..|+..++. .|+ +..+..++.+|...|++++|...|+++++.. .+..+.++..++.++...
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 34456666777666666652 232 2455666677777777777777777776653 112345556666667677
Q ss_pred ccHHHHHHHHHHHhhCCCCCCHH
Q 001797 921 EEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
|++++|.+.|+++.+ ..|+..
T Consensus 231 g~~~~A~~~~~~vi~--~yP~s~ 251 (263)
T PRK10803 231 GDTAKAKAVYQQVIK--KYPGTD 251 (263)
T ss_pred CCHHHHHHHHHHHHH--HCcCCH
Confidence 777777777777666 345544
No 205
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.15 E-value=0.37 Score=49.11 Aligned_cols=220 Identities=19% Similarity=0.141 Sum_probs=113.5
Q ss_pred cCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCchhhHHHHHHHHHhcCcHHHHH
Q 001797 711 SGNLTEAFQLVNEMPSRGVTP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQ--KGLASTSSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~~~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 787 (1012)
.+....+...+.......... ....+......+...+++..+...+..... ..+.....+..++..+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555432110 234555555666666667777666666665 34444456666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 788 KLLEDMADKHITPNHVTYTILID-YHCKAGTMKDAEHLLVEMQKRVLKP----NFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 788 ~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
+.+.........+ ......... .+...|++++|...+.+... ..| ....+......+...++++++...+.+
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 6666665532222 111222222 45566666666666666543 222 122233333334455666666666666
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 863 MVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 863 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+... ... ....+..+...+...+++++|...+....... +.....+..++..+...|+++++...+.+...
T Consensus 193 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 193 ALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6542 111 23445555555555666666666666665553 11234444444444444555666655555554
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.06 E-value=0.058 Score=59.08 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+++.....++|.+|..+.++..+
T Consensus 779 iVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 779 LVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HhhheeecccchHhHhhhhhCcc
Confidence 44455556666666665555444
No 207
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.36 Score=47.23 Aligned_cols=130 Identities=13% Similarity=0.051 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHH-----HHHHH
Q 001797 666 YNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFV-----YCTLV 740 (1012)
Q Consensus 666 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~-----~~~l~ 740 (1012)
.+.++..+...|.+.-...+++++.++..+.+......+...-.+.|+.+.|...|++..+..-..|..+ .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4456666666677777777777777765555666666677777777777777777775544322222222 22233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 741 DGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
..+.-.+++..|...+.+.+..++.++.+.|.-+-+..-.|+..+|.+.++.|+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556777777777777777777666666555555556777777777777766
No 208
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.05 E-value=0.0072 Score=50.72 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=32.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCChhhHHHH
Q 001797 319 LINGFMKQGNLQEAFRLKNEMVTFGI-KLNLFTYNALIGGICKAG--------EIEKAKGLMTEMLRLGINPDTQTYNSL 389 (1012)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~l 389 (1012)
.|.-++..|++..-..+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+++.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33334444444444444444444444 444444444444443321 122333444444444444444444444
Q ss_pred HHHH
Q 001797 390 IEGC 393 (1012)
Q Consensus 390 i~~~ 393 (1012)
+..+
T Consensus 111 l~~L 114 (120)
T PF08579_consen 111 LGSL 114 (120)
T ss_pred HHHH
Confidence 4433
No 209
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.04 E-value=0.012 Score=49.34 Aligned_cols=85 Identities=12% Similarity=0.255 Sum_probs=63.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCC
Q 001797 197 ILNDLLRANKLKLFWKVYDVMLEAKV-TPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKGLV 275 (1012)
Q Consensus 197 ll~~l~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~ 275 (1012)
.+..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..--.++. -.++-..+.+|+.|+..+++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~i---------e~kl~~LLtvYqDiL~~~lK 101 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDI---------ENKLTNLLTVYQDILSNKLK 101 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhH---------HHHHHHHHHHHHHHHHhccC
Confidence 44555666888888888888888888 789999999988887644221111 01234678888899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 001797 276 PDCFTYSLMVDGFCK 290 (1012)
Q Consensus 276 p~~~~~~~li~~~~~ 290 (1012)
|+..+|+.++..+.+
T Consensus 102 P~~etYnivl~~Llk 116 (120)
T PF08579_consen 102 PNDETYNIVLGSLLK 116 (120)
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999988764
No 210
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.00 E-value=0.84 Score=50.68 Aligned_cols=187 Identities=12% Similarity=0.060 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 732 DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDY 811 (1012)
Q Consensus 732 d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 811 (1012)
+..+|...++--...|+++...-+|+..+-....-+..|...+......|+.+-|..++....+-..+..+.+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34578888888888999999999999887765555677777888888889988888888777665444333322222223
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHccCChhHHH---HHHHHHHHcCCCCC--HHHHHHHH-HHHHh
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKPNFR-TYTSLLHGYAGIGKRSEMF---ALFDEMVERGVEPD--GVIYSMMV-DAYLK 884 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~--~~~~~~l~-~~~~~ 884 (1012)
.-..|++..|..+++.+.+. . |+.. .-..-+....+.|+.+.+. .++....+....+. ...+...+ -.+.-
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 34578999999999998875 4 5443 2223345556778887777 44444333111221 11222222 22445
Q ss_pred cCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc
Q 001797 885 EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE 921 (1012)
Q Consensus 885 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 921 (1012)
.++.+.|..++.++.+.- |++...|..+++....++
T Consensus 454 ~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 454 REDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 678899999999998874 778888888888776665
No 211
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.98 E-value=0.52 Score=47.98 Aligned_cols=221 Identities=19% Similarity=0.132 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 677 GELERARELFDGIFAKGLTP-TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSR-GVTPDNFVYCTLVDGCCRDGNMEKALS 754 (1012)
Q Consensus 677 g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~pd~~~~~~l~~~~~~~g~~~~A~~ 754 (1012)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554432110 2344555555566666666666666665531 123333445555555556666666666
Q ss_pred HHHHHHHcCCCchhhHHHHHH-HHHhcCcHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 755 LFLEMVQKGLASTSSFNALLN-GLCKSQKIFEANKLLEDMADKHITP----NHVTYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.+.......+.+......... .+...|++++|...+++... ..| ....+......+...++.++|...+.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 666666655554333333333 56666666666666666644 222 22233333333455666666666666666
Q ss_pred HCCCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 830 KRVLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 830 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.. ... ....+..+...+...+++++|...+..... ..|+ ...+..+...+...|..+++...+.+.....
T Consensus 195 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 53 222 244555666666666666666666666664 2332 3334444444445555666666666666553
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.97 E-value=0.096 Score=57.43 Aligned_cols=102 Identities=13% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 001797 191 LLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMI 270 (1012)
Q Consensus 191 ~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~ 270 (1012)
...+.+-+..+...|.+++|.++- ++.....-|.-+...-..+=+++-|++.+.+++++ .+=+-+.-++++.
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--~~L~li~EL~~~k 627 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL--RYLELISELEERK 627 (1081)
T ss_pred cccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--HHHHHHHHHHHHH
Confidence 333444445566667766665431 12222233555555555555667777776666543 2223334455666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 001797 271 HKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKK 303 (1012)
Q Consensus 271 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (1012)
++|-.|+.+.. .+.++-.|++.+|.++|.+
T Consensus 628 ~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 628 KRGETPNDLLL---ADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hcCCCchHHHH---HHHHHhhhhHHHHHHHHHH
Confidence 77777776543 3445557777777777754
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.96 E-value=0.0091 Score=61.06 Aligned_cols=85 Identities=14% Similarity=0.011 Sum_probs=35.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHH
Q 001797 746 DGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHI--TPNHVTYTILIDYHCKAGTMKD 820 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 820 (1012)
.|++++|+..|+.+++..|.+. .++..++..|...|++++|...|+.+++... +.....+..++..+...|+.++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 3444444444444444444432 3444444444444444444444444443210 0012233333334444444444
Q ss_pred HHHHHHHHHH
Q 001797 821 AEHLLVEMQK 830 (1012)
Q Consensus 821 A~~~~~~~~~ 830 (1012)
|...|+++.+
T Consensus 236 A~~~~~~vi~ 245 (263)
T PRK10803 236 AKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 214
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.41 Score=46.45 Aligned_cols=207 Identities=12% Similarity=0.107 Sum_probs=101.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 001797 736 YCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKA 815 (1012)
Q Consensus 736 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 815 (1012)
|..-..+|....++++|...+.++.+-.-.+ .++.-- .+.++.|.-+.+++.+ ++.-...|+.-...|...
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnn-rslfhA------AKayEqaamLake~~k--lsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENN-RSLFHA------AKAYEQAAMLAKELSK--LSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhc-ccHHHH------HHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHh
Confidence 4444556666677777777666665321111 111111 1112223333333322 111122334444556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChHH
Q 001797 816 GTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-----DGVIYSMMVDAYLKEGNMMK 890 (1012)
Q Consensus 816 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~ 890 (1012)
|..+-|-..+++.-+. .+.-++++|+.+|++...--... ..+.+.....+|.+..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 6666655555544321 11223344444444443210000 11234444566777777777
Q ss_pred HHHHHHHHHHc-----CCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 891 TIKLVDEMFLR-----GLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKE--IKLSHATCCILISSVYEAGNIDKATR 963 (1012)
Q Consensus 891 A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~~~~~~~ll~~~~~~g~~~~A~~ 963 (1012)
|-..+.+-... ..+.-...+...+-.+.-..++..|.+.++.--+-+ ..|++......+-..+..|+.+++.+
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~k 248 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKK 248 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHH
Confidence 77766554332 122234556667777777888999998888754322 22333222222223567888888777
Q ss_pred HHHH
Q 001797 964 FLES 967 (1012)
Q Consensus 964 ~~~~ 967 (1012)
++..
T Consensus 249 vl~s 252 (308)
T KOG1585|consen 249 VLSS 252 (308)
T ss_pred HHcC
Confidence 6554
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.015 Score=55.42 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=55.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHh-hcChHHHHHHHHHHHhCCCCCCHHHH
Q 001797 203 RANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEK-VGAIDEAFELKESMIHKGLVPDCFTY 281 (1012)
Q Consensus 203 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~g~~~~A~~~~~~~~~~g~~p~~~~~ 281 (1012)
+.|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--+ ..+-+-|++++++|...|+.||..++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~ 141 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETE 141 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 356667777778889999999999999999998876 4332 23344433222 22334566666666666666666666
Q ss_pred HHHHHHHHh
Q 001797 282 SLMVDGFCK 290 (1012)
Q Consensus 282 ~~li~~~~~ 290 (1012)
..+++.|.+
T Consensus 142 ~~ll~iFG~ 150 (228)
T PF06239_consen 142 QMLLNIFGR 150 (228)
T ss_pred HHHHHHhcc
Confidence 666666633
No 216
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.89 E-value=0.26 Score=50.51 Aligned_cols=227 Identities=12% Similarity=0.093 Sum_probs=94.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHH
Q 001797 638 FCKQGFIKEAFQLHEKMCESG--ITPNIVTYNALIDGLCKSGELERARELFDGIFAK--GLTPT---VVTYTTIIDGYCK 710 (1012)
Q Consensus 638 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~li~~~~~ 710 (1012)
+....+.++|+..+.+-+.+- ...-..++..+..+.+..|.+++++..--..+.. ..... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666554431 1112334555556666666666554433222211 00111 1223333333333
Q ss_pred cCCHHHHHHHHHHhhhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--Cch----hhHHHHHHHHHhc
Q 001797 711 SGNLTEAFQLVNEMPSR-GVTPD---NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL--AST----SSFNALLNGLCKS 780 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~-~~~pd---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~ 780 (1012)
.-++.+++.+-..-... |..|. ......+..++...+.++++++.|+.+.+... .++ .++..|+..|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333443333322111 11221 11233344455555556666666665544211 111 4555566666666
Q ss_pred CcHHHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-ChHHHHHHHHH
Q 001797 781 QKIFEANKLLEDMAD----KHITPNHVTY-----TILIDYHCKAGTMKDAEHLLVEMQK----RVLKP-NFRTYTSLLHG 846 (1012)
Q Consensus 781 g~~~~A~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~ 846 (1012)
.++++|.-+..+..+ .++..-..-| ..|.-++...|...+|.+.-++..+ .|..+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666665544444332 1111111112 2233334455555555555444332 22111 11122344555
Q ss_pred HHccCChhHHHHHHHHHH
Q 001797 847 YAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~ 864 (1012)
|...|+.+.|+.-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 555555555555555443
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.86 E-value=0.83 Score=48.42 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHH
Q 001797 663 IVTYNALIDGLCKSGELERARELFDGIFAKG-LTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF-VYCTLV 740 (1012)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~-~~~~l~ 740 (1012)
..+|..+++.-.+..-++.|+++|-++.+.+ +.+++..+++++..++ .|++.-|..+|+--... .||.. --...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4456677777777777899999999998877 6678888888888765 67888899999876553 34444 334556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 741 DGCCRDGNMEKALSLFLEMVQKGLAS--TSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.-+...++-+.|..+|+..++.--.. ...|..++.--..-|+...+..+-+++.+
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 66678889999999999776643322 36777788877888888888877777766
No 218
>PRK15331 chaperone protein SicA; Provisional
Probab=96.84 E-value=0.02 Score=52.45 Aligned_cols=86 Identities=10% Similarity=-0.115 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001797 813 CKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 813 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
...|++++|..+|+-+...+ .-+..-|..|+.++-..+++++|+..|..+...+. -|+......+.+|...|+.+.|+
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 44555555555555444321 11333344444455555555555555554443221 13333444455555555555555
Q ss_pred HHHHHHHH
Q 001797 893 KLVDEMFL 900 (1012)
Q Consensus 893 ~~~~~~~~ 900 (1012)
..|+.+..
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555444
No 219
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.99 Score=51.88 Aligned_cols=179 Identities=15% Similarity=0.217 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--hHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNE--VVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
.-.-++.+++...++-|..+-.. .+..++. ...-..++-+.+.|++++|...+-+-+.. +.|. .+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 44566777888888888776543 2323332 22333445567889999999888777643 2332 345556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 001797 359 CKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGAC 438 (1012)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 438 (1012)
....++..-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+... .|.- ..-....+..+.+.+-+++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6667777777888888888754 45555678888888888877766665443 2211 112445566666777777776
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 001797 439 RVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMT 480 (1012)
Q Consensus 439 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 480 (1012)
-+-.+... +......++. ..+++++|++.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcCC
Confidence 66554432 3334444433 5678888888887664
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.72 E-value=0.0091 Score=47.63 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=40.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 741 DGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
..|.+.+++++|.++++.++..+|.++..+...+.++.+.|++.+|.+.+++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777777777777777777777777663
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.70 E-value=0.034 Score=53.17 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCCHhHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 310 NPNEVVYTTLINGFMKQ-----GNLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
..+..+|..++..|.+. |.++=....+..|.+.|+..|..+|+.|++.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF 97 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVF 97 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC
Confidence 34555555555555432 44444444445555555555555555555444
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.66 E-value=0.4 Score=51.11 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 906 NQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 906 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+.-.+.+++.+..-.|++++|.+++++|.+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 444555666777777777777777777765
No 223
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.068 Score=53.91 Aligned_cols=150 Identities=10% Similarity=0.030 Sum_probs=79.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYT----ILIDYHCKAGTMKD 820 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~ 820 (1012)
..|+..+|...++++++..|.+.-++..--.++.-.|+...-...+++++.. ..|+...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4566666666677777766666666666666666666666666666666543 233332221 22333445666666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHH
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD----GVIYSMMVDAYLKEGNMMKTIKLVD 896 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 896 (1012)
|++..++..+. .+.|.....++.+.+...|+..++.++..+-.. ..+.. ...|-+.+-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted-~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED-DWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhccc-chhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 66666665543 122444555566666666666666665544322 11100 0112223333445556666666665
Q ss_pred H
Q 001797 897 E 897 (1012)
Q Consensus 897 ~ 897 (1012)
+
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.61 E-value=0.64 Score=46.10 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCccC---HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 878 MVDAYLKEGNMMKTIKLVDEMFLRGLVLN---QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 878 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
++..|.+.|.+..|..-++.+++. .+.. ...+..+..+|...|-.++|.+.-.-+.. ..|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~--N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA--NYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh--cCCCCc
Confidence 456677777777777777777776 2322 34455566777777777777777666654 355544
No 225
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.55 E-value=1.5 Score=47.37 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHH-CCCccChhHHHHhhhhhhcccccccccccHHHHH
Q 001797 958 IDKATRFLESMIK-FGWVADSTVMMDLVKQDQNDANSENTSNSWKEAA 1004 (1012)
Q Consensus 958 ~~~A~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1004 (1012)
...+.++++.+.. .| .+..-|...++-...++.++++...+|-|.
T Consensus 512 l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 512 LANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred chHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 5667788888776 66 788888888888888888888887777664
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.53 E-value=0.021 Score=61.17 Aligned_cols=64 Identities=13% Similarity=0.107 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG----VIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
+...++.++.+|.+.|++++|+..|+++++ +.|+. ..|++++.+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777777777777777777777775 55543 24677777777777777777777777765
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.52 E-value=0.0064 Score=49.30 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC--Cc---cC-HHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRG--LV---LN-QNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
++..++.+|...|++++|++.++++++.. .+ ++ ..++..++.++...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555666666666666666666655431 01 11 34556666666666666666666666543
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=96.50 E-value=0.14 Score=55.19 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 854 SEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 854 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
.+|.++.+.+++ +.| |+.....++.++.-.|+++.|..+++++...+ |..+.+|...+..+.-.|+.++|.+.+++
T Consensus 321 ~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 321 QKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555554 333 44445555555555555666666666666554 44455555566666666666666666666
Q ss_pred HhhCCCCCCH
Q 001797 933 MGDKEIKLSH 942 (1012)
Q Consensus 933 ~~~~g~~p~~ 942 (1012)
+.+ +.|..
T Consensus 398 alr--LsP~~ 405 (458)
T PRK11906 398 SLQ--LEPRR 405 (458)
T ss_pred Hhc--cCchh
Confidence 554 44543
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.47 E-value=0.039 Score=54.95 Aligned_cols=100 Identities=19% Similarity=0.105 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHhhhhC
Q 001797 106 FSYLAMMLCNSRLFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDG 185 (1012)
Q Consensus 106 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~ 185 (1012)
.+-.+.-+..+|+|..|...|..++..+|... ..+.++.-|+.++...|++++|...|..+.+..
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---------------~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~ 208 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---------------YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY 208 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---------------ccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence 34455667788999999999999999888643 355778889999999999999999999997776
Q ss_pred CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001797 186 GSVPGL-LCCNSILNDLLRANKLKLFWKVYDVMLEA 220 (1012)
Q Consensus 186 ~~~~~~-~~~~~ll~~l~~~~~~~~a~~~~~~m~~~ 220 (1012)
+-.|.. .+.-.|..++.+.|+.++|...|+++.+.
T Consensus 209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666654 66777778888888888888888888765
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.47 E-value=0.35 Score=52.27 Aligned_cols=60 Identities=13% Similarity=0.116 Sum_probs=31.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVER-GVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.|..++-+.|+.+||++.++++++. .......+...|+.+|...+.+.++..++.+--+.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 3455555556666666666665541 11112234445556666666666666666554433
No 231
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.41 E-value=2.7 Score=48.79 Aligned_cols=210 Identities=15% Similarity=0.094 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc---CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKS---QKIFEANKLLEDMADKHITPNHVTYTILIDYHC----KAGTMKD 820 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~ 820 (1012)
+.+.|..++.+..+.+..+. ...++.+|... .+...|.++|....+.|. ...+-.+..+|. -..+.+.
T Consensus 308 d~~~A~~~~~~aA~~g~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred cHHHHHHHHHHHHhcCCchH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHH
Confidence 45566666666666554333 22233333322 345677777777766552 222223333222 2236777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHh----cCChHHHHH
Q 001797 821 AEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVD---AYLK----EGNMMKTIK 893 (1012)
Q Consensus 821 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~----~g~~~~A~~ 893 (1012)
|..++.+..+.| .|...--......+.. ++++.+.-.+..+.+.+.+--...-..+.. .... ..+.+.+..
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 888887777765 3322222223333333 667766666666665444321111111111 1111 236777888
Q ss_pred HHHHHHHcCCccCHHHHHHHHHHHhcc----ccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 001797 894 LVDEMFLRGLVLNQNVYTSLANSLCKE----EEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAG----NIDKATRFL 965 (1012)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g----~~~~A~~~~ 965 (1012)
.+.+....| +......|++.|..- .+++.|...|..+..++ ....+.+..+++.| ++..|.+++
T Consensus 461 ~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-----~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 461 LYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-----AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred HHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-----hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 888888887 777888888877655 45888998888887643 33444444454433 267888888
Q ss_pred HHHHHCC
Q 001797 966 ESMIKFG 972 (1012)
Q Consensus 966 ~~~~~~g 972 (1012)
+.....+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
Confidence 8877644
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.078 Score=52.87 Aligned_cols=96 Identities=18% Similarity=0.152 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADKHIT--PNHVTYTILI 809 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~ 809 (1012)
.|+.-+.. .+.|++..|...|...++..|.++ .++..|+..+...|++++|...|..+.+.... .-+.++..|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555544 467788899999998888888766 78888888888888888888888888764211 1345677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 001797 810 DYHCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 810 ~~~~~~g~~~~A~~~~~~~~~~ 831 (1012)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7888888888888888888774
No 233
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.39 E-value=0.12 Score=52.82 Aligned_cols=48 Identities=17% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 001797 673 LCKSGELERARELFDGIFAK--GLTPTVVTYTTIIDGYCKSGNLTEAFQL 720 (1012)
Q Consensus 673 ~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l 720 (1012)
+....+.++|+..|.+.+.+ +...-..++..+..+.++.|++++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 45567777777777777654 1111223555666677777777766654
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.36 E-value=0.47 Score=50.54 Aligned_cols=172 Identities=13% Similarity=0.144 Sum_probs=83.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH-HHHcCCCchhhHHHHHH
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRG---VTPDNFVYCTLVDGCCR---DGNMEKALSLFLE-MVQKGLASTSSFNALLN 775 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~---~~pd~~~~~~l~~~~~~---~g~~~~A~~~~~~-~~~~~~~~~~~~~~l~~ 775 (1012)
.++-.|....+++..+++++.+...- +.-...+-..++-++.+ .|+.++|+.++.. +...+...+.++..++.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445666777777777777766420 00011122233334444 6666666666666 33333444455655555
Q ss_pred HHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChh-
Q 001797 776 GLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRS- 854 (1012)
Q Consensus 776 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~- 854 (1012)
.|-.. |. +.+ ..+ ....++|+..|.+.-+ +.|+...=..++..+...|...
T Consensus 226 IyKD~---------~~---~s~-~~d-------------~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 226 IYKDL---------FL---ESN-FTD-------------RESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred HHHHH---------HH---HcC-ccc-------------hHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCccc
Confidence 54321 00 000 001 1125566666665543 2344332222222222233211
Q ss_pred ---HHHHHH---HH-HHHcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 855 ---EMFALF---DE-MVERGV---EPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 855 ---~A~~~~---~~-~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
+..++- .. ..+.|. ..+-..+..++.+..-.|+.++|.+.+++|....
T Consensus 278 ~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 278 TSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred chHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 222221 11 112222 2244556677788888899999999999998774
No 235
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.36 E-value=0.93 Score=44.97 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=38.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHccCChhHHHHHHHHHH
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 864 (1012)
.+...|.+.|.+..|..-+++|++. .+.. ...+-.+..+|...|..++|.+.-.-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4556678888888888888888774 2222 2245566777888888888877655443
No 236
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.32 E-value=1.7 Score=45.42 Aligned_cols=62 Identities=21% Similarity=0.080 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 735 VYCTLVDGCCRDGNM---EKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
++..++.+|...+.. ++|..+.+.+....++.+..+..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 455556666555543 34555666665666665666655555555566677777777776654
No 237
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.29 E-value=0.058 Score=46.39 Aligned_cols=92 Identities=9% Similarity=0.020 Sum_probs=66.2
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccC---HHHHHHHHHHHhc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN---QNVYTSLANSLCK 919 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 919 (1012)
.-+....|+.+.|++.|.+.+. +-| .+..|++-+.++.-.|+.++|++-++++++..-+.. ...|..-+..|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 3456677888888888888875 444 567788888888888888888888888887742222 3445566677778
Q ss_pred cccHHHHHHHHHHHhhCC
Q 001797 920 EEEFYKVLKLLDEMGDKE 937 (1012)
Q Consensus 920 ~g~~~~A~~~~~~~~~~g 937 (1012)
.|+.+.|..-|+.+.+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 888888888887777654
No 238
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.44 Score=48.05 Aligned_cols=122 Identities=10% Similarity=0.082 Sum_probs=67.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDA 821 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 821 (1012)
.....|++.+|...|..+....+....+...++.+|...|+.+.|..++..+-..--.........-+..+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 44567888888888888888888777777888888888888888888877753321111111111222333333333333
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHH
Q 001797 822 EHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 822 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
..+-+++-. .+.|...-..+...+...|+.++|.+.+=.+++
T Consensus 223 ~~l~~~~aa--dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAA--DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333321 112444444555555555555555555554443
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.068 Score=56.05 Aligned_cols=141 Identities=15% Similarity=0.051 Sum_probs=100.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHcc
Q 001797 771 NALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGI 850 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 850 (1012)
..-++.|.+.|++..|...|++++.. +. |.+.-+.++..... . .-..++..|.-+|.+.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl 270 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAE-A-------LKLACHLNLAACYLKL 270 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhh
Confidence 34577888888888888888876542 00 11111112221111 1 1223567788889999
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH-HH
Q 001797 851 GKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV-LK 928 (1012)
Q Consensus 851 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~ 928 (1012)
+++.+|+..-++.++ ..| +....+.-+.+|...|+++.|+..|+++++.. |.|..+-..|+.+-.+..++.+. .+
T Consensus 271 ~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk 347 (397)
T KOG0543|consen 271 KEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKK 347 (397)
T ss_pred hhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 444 77788888899999999999999999999987 77788888888777777666655 67
Q ss_pred HHHHHhh
Q 001797 929 LLDEMGD 935 (1012)
Q Consensus 929 ~~~~~~~ 935 (1012)
+|..|..
T Consensus 348 ~y~~mF~ 354 (397)
T KOG0543|consen 348 MYANMFA 354 (397)
T ss_pred HHHHHhh
Confidence 8888875
No 240
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.22 E-value=0.018 Score=46.58 Aligned_cols=62 Identities=13% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVER--GVEP---D-GVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
+|+.++..|...|++++|+..|+++++. ...+ + ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666541 1111 1 34566666777777777777777776654
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.46 Score=48.26 Aligned_cols=152 Identities=14% Similarity=0.117 Sum_probs=79.3
Q ss_pred HHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH----HHHHHHHHccCC
Q 001797 777 LCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTY----TSLLHGYAGIGK 852 (1012)
Q Consensus 777 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~ 852 (1012)
....|+..+|...++++++. .+.|..++...-+++.-.|+...-...++++... ..||...| ..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34455666666666666653 4445555555556666666666666666665543 23333222 123344455666
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CccCHHHHHHHHHHHhccccHHHHHH
Q 001797 853 RSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG---LVLNQNVYTSLANSLCKEEEFYKVLK 928 (1012)
Q Consensus 853 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 928 (1012)
+++|.+..++..+ +.| |......+...+...|+..++.++..+-...- .-.-...|-..+-.+...+.++.|++
T Consensus 191 y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 191 YDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred chhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 6666666666554 333 44444455555556666666666655443321 00112334444555555566666666
Q ss_pred HHHH
Q 001797 929 LLDE 932 (1012)
Q Consensus 929 ~~~~ 932 (1012)
+|+.
T Consensus 269 IyD~ 272 (491)
T KOG2610|consen 269 IYDR 272 (491)
T ss_pred HHHH
Confidence 6655
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.17 E-value=0.2 Score=46.55 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh-----hCCCCCCHHHH
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG-----DKEIKLSHATC 945 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~p~~~~~ 945 (1012)
....++..+...|++++|...+++++... |.+...|..++.+|...|+..+|.+.|+++. +.|+.|+..+.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 45556677788888888888888888886 7788888888888888888888888888764 34777776544
No 243
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.15 E-value=0.69 Score=44.02 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
++|..|+.-+...|+.++|..+|+-+....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 456666666777777777777777666553
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=96.12 E-value=0.27 Score=53.10 Aligned_cols=154 Identities=10% Similarity=0.025 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHH---HcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 748 NMEKALSLFLEMV---QKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHL 824 (1012)
Q Consensus 748 ~~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 824 (1012)
..+.|..+|.+++ +.+|....+|..++.++...- -.|..+ ......+|.++
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~-------------~~g~~~-------------~~~~~~~a~~~ 326 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLA-------------LHGKSE-------------LELAAQKALEL 326 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHH-------------HhcCCC-------------chHHHHHHHHH
Confidence 3567788888888 666666677766666554210 000100 12234455556
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 001797 825 LVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL 903 (1012)
Q Consensus 825 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 903 (1012)
.++..+. -+.|+.....++.+....|+++.|..+|+++.. +.|+ ..+|...+..+.-.|+.++|.+.+++++...
T Consensus 327 A~rAvel-d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs- 402 (458)
T PRK11906 327 LDYVSDI-TTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE- 402 (458)
T ss_pred HHHHHhc-CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-
Confidence 6666553 233566666666666666667777777777664 5553 3455556666666677777777777766664
Q ss_pred ccC--HHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 904 VLN--QNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 904 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
|.. ..+....++.|+. ...++|+++|-+
T Consensus 403 P~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 403 PRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 211 1222222333333 335556665543
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=2 Score=49.49 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=34.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.++..+++..+.+.+..+.+..-+ .++..|..++..+.+.+..+...+...+.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 355566667777777776666533 267777888888887776665555544443
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.04 E-value=0.099 Score=46.82 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc---cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 872 GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV---LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 872 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
+..+..-+....+.|++++|++.++.+..+- | -...+...|+.+|.+.|++++|+..+++.++ +.|+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCC
Confidence 3445555666678888888888888888773 3 3356777788888888888888888888887 6776653
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.99 E-value=0.17 Score=47.01 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHH
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEM 339 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (1012)
...++..+...|++++|..+...+.... |-|...|..+|.+|...|+..+|++.|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344455555666666666666665543 445555666666666666666666655555
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.93 E-value=0.082 Score=56.86 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchh---hHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTS---SFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.++.+..+|...|++++|+..|+++++.+|.+.. +|+.++.+|...|+.++|++.+++.++
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554442 255555555555555555555555544
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.39 Score=54.28 Aligned_cols=117 Identities=16% Similarity=0.119 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHH-HHHHHHHccCChhHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHhcCChHH
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRTYT-SLLHGYAGIGKRSEMFALFDEMVER--GVEP-DGVIYSMMVDAYLKEGNMMK 890 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 890 (1012)
....+.|.+++..+.+. -|+...|. .-++.+...|+.++|++.|+++.+. ..+. ....+.-+++++.-.++|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34556666666666653 34444443 3345556667777777777665431 1111 22334455666667777777
Q ss_pred HHHHHHHHHHcCCccCHHHHHH-HHHHHhccccH-------HHHHHHHHHHh
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTS-LANSLCKEEEF-------YKVLKLLDEMG 934 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~ 934 (1012)
|.+.+.++.+.. .-+...|.. .+-++...|+. ++|.+++.++.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 777777777664 112222222 33445556666 66666666653
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.82 E-value=4.2 Score=45.43 Aligned_cols=188 Identities=12% Similarity=0.032 Sum_probs=113.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 001797 662 NIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVD 741 (1012)
Q Consensus 662 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~ 741 (1012)
+..+|...++.-.+.|+.+....+|+...-- +..=...|--.+.-....|+.+-|..++....+--.+....+...-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4567778888888889999888888887642 111223344445555556888888777766554433323333222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHH---HHHHHHHhCCCCCCHH--HHHHHHHH-HHhc
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEAN---KLLEDMADKHITPNHV--TYTILIDY-HCKA 815 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~--~~~~l~~~-~~~~ 815 (1012)
.+-..|++..|..+++.+.+..|....+-..-+....+.|+.+.+. +++....+....+... .+...+.. +.-.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 3345678899999998888877554455556666777788888877 4444443322222111 11122221 2335
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccC
Q 001797 816 GTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIG 851 (1012)
Q Consensus 816 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 851 (1012)
++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 6788888888888775 5666667777776665544
No 251
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.79 E-value=0.27 Score=46.01 Aligned_cols=104 Identities=14% Similarity=0.099 Sum_probs=76.1
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHh
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEPD-----GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLC 918 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 918 (1012)
++-+.+.|++++|..-|.++++. .+|. ...|.+-+-++.+.++++.|++-..++++.+ |....+...-+.+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 34567788888888888888873 2221 2345555677888999999999999999887 434555566677888
Q ss_pred ccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 919 KEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
+..++++|++-|+++++ +.|......-.+..
T Consensus 180 k~ek~eealeDyKki~E--~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILE--SDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHH--hCcchHHHHHHHHh
Confidence 99999999999999988 67876655544443
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.78 E-value=0.45 Score=53.77 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH------HHHHHHHHHH----ccCChhHHHHHHHHHHHcCCCCCHHHHH
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR------TYTSLLHGYA----GIGKRSEMFALFDEMVERGVEPDGVIYS 876 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 876 (1012)
.++....-.|+-+.+++++.+..+.+---.+. .|...+..++ .....+.|.+++..+.+ .-|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHH
Confidence 45555556677777777776655421111111 2222232222 24577889999999986 456655554
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcC--Cc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-
Q 001797 877 -MMVDAYLKEGNMMKTIKLVDEMFLRG--LV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS- 951 (1012)
Q Consensus 877 -~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~- 951 (1012)
.-+..+...|+.++|++.++++.... .+ .....+..++.++.-.++|++|.+.+.++.+. ..-+...|.++.+.
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-SKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-cccHHHHHHHHHHHH
Confidence 44588889999999999999877521 11 33456777999999999999999999999874 34455555555555
Q ss_pred HHhcCCH-------HHHHHHHHHHHH
Q 001797 952 VYEAGNI-------DKATRFLESMIK 970 (1012)
Q Consensus 952 ~~~~g~~-------~~A~~~~~~~~~ 970 (1012)
+...|+. ++|.+++.++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7788888 888888888776
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.74 E-value=0.028 Score=39.29 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHH
Q 001797 875 YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSL 913 (1012)
Q Consensus 875 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 913 (1012)
+..++..|...|++++|+++++++++.. |.|..+|..|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 3444444555555555555555555443 4444444444
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.60 E-value=0.19 Score=43.32 Aligned_cols=91 Identities=14% Similarity=0.020 Sum_probs=56.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCH
Q 001797 742 GCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH---VTYTILIDYHCKAGTM 818 (1012)
Q Consensus 742 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~ 818 (1012)
+....|+.+.|++.|.+.+...|..+.+||.-+.++--+|+.++|++-+++.++..-.... ..|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3456677777777777777777777777777777777777777777777776653211111 2333444455566666
Q ss_pred HHHHHHHHHHHHCC
Q 001797 819 KDAEHLLVEMQKRV 832 (1012)
Q Consensus 819 ~~A~~~~~~~~~~~ 832 (1012)
+.|..-|....+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666655443
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=2.6 Score=41.16 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 279 FTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
..|-.-..+|-...++++|...+.+..+. ...|...|. ....++.|.-+.+++.+. +--+..|+.-..+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 34555556777788888888888777642 122222221 123456666666666543 22234455666778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---C--CCCChhhHHHHHHHHHhcCC
Q 001797 359 CKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKR---N--LSPTAYTCNVIINGLCRCSD 433 (1012)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~g~ 433 (1012)
..+|..+-|-..+++..+. ..+-++++|+++|++.... + ...-...+....+++.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888888887777776542 2344555555555554321 1 00011223344455556666
Q ss_pred HHHHHHHHHHHHHCCC----CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 001797 434 LEGACRVFEEMIACGL----KPNN-FVYTTLIQAHLRQNRFEEAINILKGM 479 (1012)
Q Consensus 434 ~~~A~~~~~~~~~~g~----~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~ 479 (1012)
+++|-..|.+-..... -++. ..|-..|-.+.-..++..|...++..
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 6665544443221100 0111 12333444444455666666666553
No 256
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.50 E-value=7.4 Score=46.06 Aligned_cols=196 Identities=13% Similarity=0.025 Sum_probs=97.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHhCCC-CCC-------HHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCh
Q 001797 774 LNGLCKSQKIFEANKLLEDMADKHI-TPN-------HVTYTILIDYHCKAGTMKDAEHLLV--------EMQKRVLKPNF 837 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~ 837 (1012)
+...+-.+++..|...++.+.+..- .|+ +..+...+-.+-..|+.+.|+..|. .....+...+.
T Consensus 368 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El 447 (608)
T PF10345_consen 368 IWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFREL 447 (608)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHH
Confidence 3444567899999999988875321 111 2222223333446799999999997 33333333333
Q ss_pred HHHHH--HHHHHHccCC--hhH--HHHHHHHHHH-cCCCC--CHHHHHHHH-HHHHh--cCChHHHHHHHHHHHHcC---
Q 001797 838 RTYTS--LLHGYAGIGK--RSE--MFALFDEMVE-RGVEP--DGVIYSMMV-DAYLK--EGNMMKTIKLVDEMFLRG--- 902 (1012)
Q Consensus 838 ~~~~~--l~~~~~~~g~--~~~--A~~~~~~~~~-~~~~p--~~~~~~~l~-~~~~~--~g~~~~A~~~~~~~~~~~--- 902 (1012)
.++.. ++..+...+. .++ +.++++.+.. ..-.| +..++..++ .++.. .-...++...+.+.++..
T Consensus 448 ~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~ 527 (608)
T PF10345_consen 448 YILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNK 527 (608)
T ss_pred HHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHh
Confidence 33332 2233333332 222 5556665443 11222 233444443 33321 112335655555544432
Q ss_pred CccC---HHHHHHHHHHHhccccHHHHHHHHHHHhhCC-CCCCHHHHHH------HHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 903 LVLN---QNVYTSLANSLCKEEEFYKVLKLLDEMGDKE-IKLSHATCCI------LISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 903 ~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~------ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
...+ ...++.++..+. .|+..+..+......... -.|+.....| ++.. +..+|+.++|.....+..+
T Consensus 528 ~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 528 LGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 0111 223444555555 777777666555543211 1244444433 2222 5678999999998877654
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.38 E-value=0.033 Score=38.93 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILIS 950 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~ 950 (1012)
.+|..++..|...|++++|++.++++++ ..|+++..+..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHHHHHhh
Confidence 4788999999999999999999999998 7899988776654
No 258
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.33 E-value=2.8 Score=40.13 Aligned_cols=181 Identities=14% Similarity=0.030 Sum_probs=109.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNH-VTYTILIDYHCKAGTMKDA 821 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 821 (1012)
|-..|-+.-|+--|.+.+...|+-+.++|.|+--+...|+++.|.+.|+...+. .|.. .+..+-.-++.-.|+++-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhh
Confidence 345566777788888888999999999999999999999999999999999884 4422 2222222234457899988
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHH--ccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 001797 822 EHLLVEMQKRVLKPNFRTYTSLLHGYA--GIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMF 899 (1012)
Q Consensus 822 ~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 899 (1012)
.+-+.+.-+. -+.|+ |.+ ++.|. ..-++.+|..-+.+=.+ +...+..-|+ ++..|...=..+ .+++++.
T Consensus 153 q~d~~~fYQ~-D~~DP--fR~-LWLYl~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~-iV~~yLgkiS~e---~l~~~~~ 223 (297)
T COG4785 153 QDDLLAFYQD-DPNDP--FRS-LWLYLNEQKLDPKQAKTNLKQRAE-KSDKEQWGWN-IVEFYLGKISEE---TLMERLK 223 (297)
T ss_pred HHHHHHHHhc-CCCCh--HHH-HHHHHHHhhCCHHHHHHHHHHHHH-hccHhhhhHH-HHHHHHhhccHH---HHHHHHH
Confidence 8877766553 22233 222 22332 23356666654443222 2322222232 223332221222 2223332
Q ss_pred HcCCccC-------HHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 900 LRGLVLN-------QNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 900 ~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
... ..+ ..+|..|+.-+...|+.++|..+++-+..
T Consensus 224 a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 224 ADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 221 111 35677788888889999999988887765
No 259
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.30 E-value=15 Score=48.29 Aligned_cols=316 Identities=9% Similarity=0.041 Sum_probs=164.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001797 563 TLIDGHCKEGNVKEAFSTFRCM----LGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGF 638 (1012)
Q Consensus 563 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 638 (1012)
.+..+-.+.+.+..|.-.++.- .+. .....-|..+...|...++++....+...-.. .|+ ...-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4555666778888888888873 221 11223344455588888888887777664221 122 23345556
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 001797 639 CKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTI-IDGYCKSGNLTEA 717 (1012)
Q Consensus 639 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A 717 (1012)
...|++..|...|+.+.+.+ ++....++.++......|.++......+..... ..+....|+.+ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 77899999999999998764 234667777777777778888877766666543 22333333332 2333566677766
Q ss_pred HHHHHHhhhCCCCCCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHc--------CCCch--hhHHHHHHHHHhcCcH
Q 001797 718 FQLVNEMPSRGVTPDNFVYCT--LVDGCCRDG--NMEKALSLFLEMVQK--------GLAST--SSFNALLNGLCKSQKI 783 (1012)
Q Consensus 718 ~~l~~~~~~~~~~pd~~~~~~--l~~~~~~~g--~~~~A~~~~~~~~~~--------~~~~~--~~~~~l~~~~~~~g~~ 783 (1012)
..... .. +..+|.. ++....+.. +.-.-.+..+.+.+. ..... ..|..+...+.-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 65544 11 1112222 222222111 111111122222111 11111 3344444333221111
Q ss_pred HHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH-HHHCCCCC-----ChHHHHHHHHHHHccC
Q 001797 784 FEANKLLEDMADKHITPNH------VTYTILIDYHCKAGTMKDAEHLLVE-MQKRVLKP-----NFRTYTSLLHGYAGIG 851 (1012)
Q Consensus 784 ~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~g 851 (1012)
... +... +..++. .-|..-+..-....+..+-+--+++ +......| -..+|...++...+.|
T Consensus 1611 ~~~----~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1611 NSI----EELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred HHH----HHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 111 1110 112211 1222222111111112222222222 11111122 2447888888888899
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc
Q 001797 852 KRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV 904 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 904 (1012)
+++.|...+-.+.+.+ . +..+.-.+..+...|+...|+.++++.++...+
T Consensus 1685 ~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred cHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 9999998887777643 3 345566778888999999999999999877543
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.22 E-value=0.55 Score=42.20 Aligned_cols=54 Identities=15% Similarity=0.068 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
..+.|++++|++.|+.+....|.+. .+...|+.+|.+.|++++|...+++.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455666666666666666655444 45555666666666666666666666664
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=2.2 Score=43.28 Aligned_cols=145 Identities=13% Similarity=0.102 Sum_probs=89.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCC
Q 001797 773 LLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGK 852 (1012)
Q Consensus 773 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 852 (1012)
-+......|++.+|..+|+...... +.+...-..++.+|...|+.+.|..++..+....-.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3444567888888888888887752 334456667888888999999999888876542111112222223344444555
Q ss_pred hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccc
Q 001797 853 RSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEE 921 (1012)
Q Consensus 853 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 921 (1012)
..+...+-.+.. -.| |...-..++..+...|+.++|.+.+-.++.++.. .|..+-..|+..+..-|
T Consensus 219 ~~~~~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 TPEIQDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 554444444443 345 6667777788888888888888887777776322 34444555555444444
No 262
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=3.6 Score=40.02 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=64.4
Q ss_pred CChhHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHH------HHHHHhc
Q 001797 851 GKRSEMFALFDEMVER--GVEPDG---VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTS------LANSLCK 919 (1012)
Q Consensus 851 g~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------l~~~~~~ 919 (1012)
.++++|+..|+++.+. |-..+. ..+...+..-...+++.+|+++|+++....+..+..-|.. -+-++..
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 5677777777777662 212121 2222333444567889999999999887754433322322 2333444
Q ss_pred cccHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 920 EEEFYKVLKLLDEMGDKEIKLSHATC--CILISSVYEAGNIDKATRFLESMIKF 971 (1012)
Q Consensus 920 ~g~~~~A~~~~~~~~~~g~~p~~~~~--~~ll~~~~~~g~~~~A~~~~~~~~~~ 971 (1012)
.++.--+...+++-.+ +.|.-... .-++..+...=+-.+...+-+.+.+.
T Consensus 208 ~~D~v~a~~ALeky~~--~dP~F~dsREckflk~L~~aieE~d~e~fte~vkef 259 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE--LDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEF 259 (288)
T ss_pred cccHHHHHHHHHHHHh--cCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4676667777777766 56754332 33444554433333344444444443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=1.6 Score=40.16 Aligned_cols=132 Identities=13% Similarity=0.079 Sum_probs=82.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCC
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKPNFR-TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGV---IYSMMVDAYLKEGN 887 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~ 887 (1012)
+.+.|..++|+.-|..+.+.|...=+. ............|+..+|...|.++-.....|... .-..-...+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345677777777777777654432111 22233445567788888888888876533333221 11122355677788
Q ss_pred hHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 888 MMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 888 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
+++...-.+.+...+-|.....--.|+-+-.+.|++.+|.++|..+......|.+.
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 88877777777666644445556667778888888888888888876544455443
No 264
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.80 E-value=2.3 Score=37.18 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=81.4
Q ss_pred hcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCChH
Q 001797 167 KIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTY---TSLINAHFRAGNVK 243 (1012)
Q Consensus 167 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~ 243 (1012)
-.|.+++..++....+.. .+..-+|.++.-...+-+-+-..++++.+-. -.|.... -.++.+|.+.|...
T Consensus 14 ldG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchH
Confidence 357777788888776432 4556666666666655555555555555532 2333332 34566666655432
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 001797 244 AAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGF 323 (1012)
Q Consensus 244 ~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 323 (1012)
.-...-++.+.++|+-+.-.+++.+..+.+ .+++.....+..+|
T Consensus 87 -----------------------------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay 130 (161)
T PF09205_consen 87 -----------------------------------EYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAY 130 (161)
T ss_dssp -----------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHH
Confidence 223445667778888888888888887643 67788888899999
Q ss_pred HhcCChhHHHHHHHHHHhCCCC
Q 001797 324 MKQGNLQEAFRLKNEMVTFGIK 345 (1012)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~ 345 (1012)
.+.|+..+|.+++.++-+.|++
T Consensus 131 ~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 131 KKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHhcchhhHHHHHHHHHHhchH
Confidence 9999999999999999888854
No 265
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=1.9 Score=40.70 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=51.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCccC--HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhc
Q 001797 880 DAYLKEGNMMKTIKLVDEMFLRGLVLN--QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS--VYEA 955 (1012)
Q Consensus 880 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~--~~~~ 955 (1012)
..+...|++++|...++..+......+ ..+-..|+.+....|.+++|.+.++.... ++.......+++ +...
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~w~~~~~elrGDill~k 172 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccHHHHHHHHhhhHHHHc
Confidence 555666666666666666654420000 12222355666666666666666655432 222333333333 5666
Q ss_pred CCHHHHHHHHHHHHHCCCccChhHHH
Q 001797 956 GNIDKATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 956 g~~~~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
|+.++|+.-|+..+...-.|....+.
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~~~~~~l 198 (207)
T COG2976 173 GDKQEARAAYEKALESDASPAAREIL 198 (207)
T ss_pred CchHHHHHHHHHHHHccCChHHHHHH
Confidence 66666666666666655444444443
No 266
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.73 E-value=6.9 Score=41.53 Aligned_cols=103 Identities=16% Similarity=0.182 Sum_probs=59.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcH
Q 001797 704 IIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKI 783 (1012)
Q Consensus 704 li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 783 (1012)
.|.-+...|+...|.++-.+.. .||..-|...+.+++..++|++-..+... ..+|-.|...+..+.+.|+.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCH
Confidence 3444556666666666655553 35666666677777777777665554321 23345555666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 784 FEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLL 825 (1012)
Q Consensus 784 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 825 (1012)
.+|..+..++ + +..-+..|.+.|++.+|.+..
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 6666665552 1 123445566666666666543
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.70 E-value=0.033 Score=36.15 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=26.6
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHhcCcHHHHH
Q 001797 756 FLEMVQKGLASTSSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 756 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 787 (1012)
|+++++.+|.+..+|+.|+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56778888888888888888888888888875
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.70 E-value=3.6 Score=44.92 Aligned_cols=142 Identities=18% Similarity=0.180 Sum_probs=85.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHH
Q 001797 780 SQKIFEANKLLEDMADKHITPNHV-TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFA 858 (1012)
Q Consensus 780 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 858 (1012)
..+.+.-++.-.+.++ +.|+.. .|..|. --......+|++++++..+.|- ..+..- ......|.
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g~------ 245 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHGH------ 245 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhcccc------
Confidence 3344444455555554 445443 232222 2234557888888888776431 011000 00011111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhC
Q 001797 859 LFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 859 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 936 (1012)
.++........|-..+-..++.++.+.|+.+||++.++.+.+.... .+-.+...|+.++...+.+.++..++.+-.+.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 1122222233344445567889999999999999999999987422 24568889999999999999999999997653
No 269
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.62 E-value=1.7 Score=41.01 Aligned_cols=92 Identities=8% Similarity=0.025 Sum_probs=67.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcc
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKE 920 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 920 (1012)
+...+...|++++|..-++..+....+.+ ...-..|+......|.+++|++.++.....+ -.+.....-++++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHc
Confidence 45667788899999888888774222111 1223356678888999999999988877665 2445566678889999
Q ss_pred ccHHHHHHHHHHHhhC
Q 001797 921 EEFYKVLKLLDEMGDK 936 (1012)
Q Consensus 921 g~~~~A~~~~~~~~~~ 936 (1012)
|+.++|+..|++.++.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 9999999999998874
No 270
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=11 Score=43.25 Aligned_cols=105 Identities=18% Similarity=0.210 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 001797 632 SSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKS 711 (1012)
Q Consensus 632 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 711 (1012)
+--+.-+...|+..+|.++-.+.. -||...|-.-+.++...+++++-.++-++.. .+..|..++..|.+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 333444556666677766665543 4566666666667777777776555443332 234555666677777
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 001797 712 GNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSL 755 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~ 755 (1012)
|+.++|.+++.+... .. -...+|.+.|++.+|.++
T Consensus 758 ~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHH
Confidence 777777776665432 11 345566666666666554
No 271
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.53 E-value=8.5 Score=41.70 Aligned_cols=72 Identities=13% Similarity=0.130 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCccChhHH
Q 001797 907 QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKL-SHATCCILISSV--YEAGNIDKATRFLESMIKFGWVADSTVM 980 (1012)
Q Consensus 907 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ll~~~--~~~g~~~~A~~~~~~~~~~g~~~~~~~~ 980 (1012)
...+..|+.+++-+|++++|...+..+.. +-| ..+.-..+++.| .+.|+...|...+++-....++|....+
T Consensus 619 ~v~~~nLa~a~alq~~~dqAk~ll~~aat--l~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~~~~~v~~~~ev 693 (696)
T KOG2471|consen 619 GVLFANLAAALALQGHHDQAKSLLTHAAT--LLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCTHVSFVPGRLEV 693 (696)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHH--hhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcccccccCcchhh
Confidence 35677899999999999999999977654 222 222233344455 4789999999988887777777765544
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.21 E-value=7.1 Score=45.42 Aligned_cols=128 Identities=14% Similarity=0.055 Sum_probs=56.3
Q ss_pred HHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCccCHHHHH
Q 001797 840 YTSLLHGYAGIG-----KRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE---GNMMKTIKLVDEMFLRGLVLNQNVYT 911 (1012)
Q Consensus 840 ~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 911 (1012)
...++.+|.+.. +.+.|..++.+..+.|.+ + ....++.++..- .+...|.++|..+...| ......
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~--a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~ 364 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-D--AQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIY 364 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-h--HHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHH
Confidence 344444444422 444566666665553321 2 222233333222 23456666666666665 333333
Q ss_pred HHHHHHh----ccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 001797 912 SLANSLC----KEEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVA 975 (1012)
Q Consensus 912 ~l~~~~~----~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 975 (1012)
.++.+|. -..+.+.|..+++++.+.| .|........+..+.. ++++.+.-.+..+...|+.-
T Consensus 365 ~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 365 RLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEV 430 (552)
T ss_pred HHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhH
Confidence 3333322 2245566666666665544 2221111111111222 55555555555555555443
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.15 E-value=3.7 Score=37.82 Aligned_cols=124 Identities=14% Similarity=0.066 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-HHHHH--HHHHHhcCChhHHH
Q 001797 258 AIDEAFELKESMIHKGLVPDCF-TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEV-VYTTL--INGFMKQGNLQEAF 333 (1012)
Q Consensus 258 ~~~~A~~~~~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~ 333 (1012)
+.++|+.-|..+.+.|...-.+ .--.........|+...|...|++.-.....|-.. -.-.| .-.+...|.|+...
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~ 152 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVS 152 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHH
Confidence 3445555555555555543332 22233455677888888888888887654444332 11112 22345677787777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 001797 334 RLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINP 381 (1012)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 381 (1012)
...+.+...|-+.-...-..|.-+-.+.|++.+|.+.|+.+......|
T Consensus 153 srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 153 SRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 777777665544445555666666677888888888888777543333
No 274
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.13 E-value=9.3 Score=40.57 Aligned_cols=105 Identities=20% Similarity=0.240 Sum_probs=55.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 001797 599 LIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGE 678 (1012)
Q Consensus 599 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 678 (1012)
.+.-+...|+...|.++-.+.. .|+...|...+.+++..+++++-..+... .-++.-|-.++..|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555555544442 34666666666666666666655443221 1123455566666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001797 679 LERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNE 723 (1012)
Q Consensus 679 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 723 (1012)
..+|..+...+ + +..-+..|.+.|++.+|.+...+
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666555541 1 12334555666666666555443
No 275
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.88 E-value=0.06 Score=34.96 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHcCCccCHHHHHHHHHHHhccccHHHHH
Q 001797 896 DEMFLRGLVLNQNVYTSLANSLCKEEEFYKVL 927 (1012)
Q Consensus 896 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 927 (1012)
+++++.. |.++.+|..|+.+|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 445555555555555555555553
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.78 E-value=19 Score=43.81 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH--HHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRT--YTSLLH 845 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~ 845 (1012)
..|.+.++.+...+.+++|.-.|+..-+. ...+.+|..+|++.+|..+..++.. ..+... -..|+.
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHH
Confidence 34444455555555555555555443210 1223445555555555555544431 112111 123444
Q ss_pred HHHccCChhHHHHHHHHH
Q 001797 846 GYAGIGKRSEMFALFDEM 863 (1012)
Q Consensus 846 ~~~~~g~~~~A~~~~~~~ 863 (1012)
-+...+++-+|-++..+.
T Consensus 1008 ~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHcccchhHHHHHHHH
Confidence 455555555555555444
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.68 E-value=0.098 Score=33.91 Aligned_cols=32 Identities=3% Similarity=0.200 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
..|..++.++...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 3556666666666666666666666665 4554
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.65 E-value=13 Score=40.59 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCcc--------
Q 001797 837 FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP---DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVL-------- 905 (1012)
Q Consensus 837 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------- 905 (1012)
..+|..++..+.+.|+++.|...+..+...+..+ .+......+..+...|+..+|+..++..+......
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 3456666666666777776666666665422111 23334444555666666666666666665521110
Q ss_pred -------------------------CHHHHHHHHHHHhcc------ccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 906 -------------------------NQNVYTSLANSLCKE------EEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 906 -------------------------~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
-..++..++.-.... ++.+++.+.|.++.+ +.|+....+...+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWHSWAL 300 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHHHHHH
Confidence 022333444444444 777788888888877 67776665554444
No 279
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.64 E-value=0.13 Score=33.42 Aligned_cols=32 Identities=13% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
.+|..++.++...|++++|++.++++++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566666666666666666666666666 5554
No 280
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=17 Score=41.85 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC
Q 001797 702 TTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQ 781 (1012)
Q Consensus 702 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 781 (1012)
+--+.-+...|+..+|.++-.+.. -||...|..-+.+++..+++++-.++-+.. .++--|.-.+..+.+.|
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk-----ksPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK-----KSPIGYLPFVEACLKQG 758 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc-----CCCCCchhHHHHHHhcc
Confidence 333444556677777777777664 456666666677777777776655443322 12344555566666666
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 782 KIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLL 825 (1012)
Q Consensus 782 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 825 (1012)
+.++|.+++.+.-. .. -...+|.+.|++.+|.++.
T Consensus 759 n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 66666666655321 11 3445566666666666543
No 281
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.53 E-value=1.2 Score=39.76 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 001797 278 CFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGG 357 (1012)
Q Consensus 278 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 357 (1012)
..++..++.++++.|+.+....+++..-...+..... .+. .-......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4456666666666777666666666554322111100 000 11122345666777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHH
Q 001797 358 ICKAGEIEKAKGLMTEMLRL-GINPDTQTYNSLIEGCY 394 (1012)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~ 394 (1012)
|+..|++..|.++.+...+. +++-+..+|..|+....
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777766553 44445666666665443
No 282
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=8.1 Score=37.70 Aligned_cols=131 Identities=9% Similarity=0.075 Sum_probs=66.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHH
Q 001797 743 CCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKA-GTMKDA 821 (1012)
Q Consensus 743 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A 821 (1012)
|.+.+++++|...++..++ +|...|++..|.+..-++-+ .|... .++++|
T Consensus 83 cykk~~~~eAv~cL~~aie--------------Iyt~~Grf~~aAk~~~~iaE---------------iyEsdl~d~eka 133 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIE--------------IYTDMGRFTMAAKHHIEIAE---------------IYESDLQDFEKA 133 (288)
T ss_pred HhhccChHHHHHHHHHHHH--------------HHHhhhHHHHHHhhhhhHHH---------------HHhhhHHHHHHH
Confidence 3455577777777766654 56666666655544333322 22211 344455
Q ss_pred HHHHHHHHHC--CCCCC---hHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHH------HHHHHHHhcCChHH
Q 001797 822 EHLLVEMQKR--VLKPN---FRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYS------MMVDAYLKEGNMMK 890 (1012)
Q Consensus 822 ~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~------~l~~~~~~~g~~~~ 890 (1012)
+..|+..-+. |-..+ ...+.-+...-...+++.+|+++|+++....+..+.--|. .-+-++.-..+.-.
T Consensus 134 I~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~ 213 (288)
T KOG1586|consen 134 IAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVN 213 (288)
T ss_pred HHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHH
Confidence 5555444331 11111 1223333344456678888888888887654443332222 11223333456666
Q ss_pred HHHHHHHHHHcC
Q 001797 891 TIKLVDEMFLRG 902 (1012)
Q Consensus 891 A~~~~~~~~~~~ 902 (1012)
+...+++-.+..
T Consensus 214 a~~ALeky~~~d 225 (288)
T KOG1586|consen 214 AQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHhcC
Confidence 666666666664
No 283
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.36 E-value=0.73 Score=43.26 Aligned_cols=88 Identities=14% Similarity=0.106 Sum_probs=65.3
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTPDN-----FVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~pd~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
+...|++++|..-|.+.+.. +++.. +.|..-..++.+.+.++.|++-..++++.+|....++..-+.+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 45677777777777777764 33321 2344455566778888888888888888888877777777888888888
Q ss_pred HHHHHHHHHHHHhC
Q 001797 783 IFEANKLLEDMADK 796 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~ 796 (1012)
+++|++-|+++++.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888888874
No 284
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.32 E-value=13 Score=39.42 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 001797 855 EMFALFDEMVERGVEPDGVIYSMMVDAYLK----EGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 855 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 902 (1012)
.|...+.++.+.+ +......++..|.. ..+.++|..+|++..+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 4555555555433 33333334433322 225556666666655555
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.22 E-value=5.5 Score=34.98 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=29.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCC
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHI 798 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 798 (1012)
.++.....|+-++-.+++..+.+.+..++.....++.+|.+.|+..++.+++.++.+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344445555555555555555544444445555566666666666666666666555543
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.21 E-value=12 Score=39.04 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=29.5
Q ss_pred HHcCCHHHHHHHHHHhhhCC--CCCCHH-----HHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 001797 709 CKSGNLTEAFQLVNEMPSRG--VTPDNF-----VYCTLVDGCCRDG-NMEKALSLFLEMVQ 761 (1012)
Q Consensus 709 ~~~g~~~~A~~l~~~~~~~~--~~pd~~-----~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 761 (1012)
.++|+.+.|..++.+..... ..|+.. .+...+......+ +++.|..+++++.+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 46788888888888776532 233332 1111222223444 77777777766544
No 287
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.20 E-value=0.38 Score=48.85 Aligned_cols=92 Identities=15% Similarity=0.118 Sum_probs=52.1
Q ss_pred HHHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccH
Q 001797 845 HGYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEF 923 (1012)
Q Consensus 845 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 923 (1012)
+-|.++|.++||+..|...+. ..| ++.++.+-+.+|.+..++..|..-...++..+ ..-..+|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 445666666666666665553 444 55555555566666666666666665555543 11123444555555555666
Q ss_pred HHHHHHHHHHhhCCCCCC
Q 001797 924 YKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 924 ~~A~~~~~~~~~~g~~p~ 941 (1012)
.+|.+-++.+++ ++|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 666666666665 5565
No 288
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.05 E-value=4.2 Score=37.25 Aligned_cols=35 Identities=9% Similarity=0.117 Sum_probs=14.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHh
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCK 779 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 779 (1012)
..+.......+++.++..++..+...+.++..|++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 33344444444444444433333344444444443
No 289
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.05 E-value=7.7 Score=39.14 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=38.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
...|..+|.+.+|+++.++.+..+ |-+...|..|...+...|+--.|.+.|+++.
T Consensus 286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 356667777777777777777765 5666777777777777777766766666653
No 290
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.97 E-value=24 Score=41.78 Aligned_cols=48 Identities=23% Similarity=0.067 Sum_probs=26.0
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCC-------hhhHHHHHHHHHhcCCHHHHHHHHH
Q 001797 640 KQGFIKEAFQLHEKMCESGI-TPN-------IVTYNALIDGLCKSGELERARELFD 687 (1012)
Q Consensus 640 ~~g~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 687 (1012)
-.+++..|....+.+.+... .|+ ..++...+-.+...|+.+.|...|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677777777777764311 111 1222222333445677888887776
No 291
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.97 E-value=3.2 Score=46.26 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=13.1
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHH
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
+...|..|+......|+++-|.+.|.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344455555555555555544444444
No 292
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.90 E-value=25 Score=41.66 Aligned_cols=91 Identities=16% Similarity=0.118 Sum_probs=50.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC----H---HHHHHHHH-HHHHcCCHHHHHHHHHHhhhC----CCCCCHHHHHHH
Q 001797 672 GLCKSGELERARELFDGIFAKGLTPT----V---VTYTTIID-GYCKSGNLTEAFQLVNEMPSR----GVTPDNFVYCTL 739 (1012)
Q Consensus 672 ~~~~~g~~~~A~~~~~~~~~~~~~p~----~---~~~~~li~-~~~~~g~~~~A~~l~~~~~~~----~~~pd~~~~~~l 739 (1012)
......++++|..+..++...-..|+ . ..++.+-. .....|++++|.++.+..... -..+..+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34456677777777777665311111 1 12333221 223467777777777766543 122234455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 001797 740 VDGCCRDGNMEKALSLFLEMVQK 762 (1012)
Q Consensus 740 ~~~~~~~g~~~~A~~~~~~~~~~ 762 (1012)
..+..-.|++++|..+.....+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH
Confidence 66666677777777776665543
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.68 E-value=24 Score=40.96 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 001797 320 INGFMKQGNLQEAFRLKNEMVTFGIKL---NLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRE 396 (1012)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 396 (1012)
|+.+.+.+.+++|+.+-+.... ..| -...+...|..+.-.|++++|-...-.|... +..-|---+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 4555666667777666554432 222 2234555666666677777777776666532 444454444444444
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001797 397 NNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430 (1012)
Q Consensus 397 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 430 (1012)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 443222111 1111111244556666655554
No 294
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.67 E-value=1.5 Score=39.06 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=38.1
Q ss_pred CCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCcCHHHHHHHHHHHH
Q 001797 308 KLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVT-FGIKLNLFTYNALIGGIC 359 (1012)
Q Consensus 308 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~ 359 (1012)
...|+..+..+++.+|+..|++..|+++.+...+ -+++-+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3567888888888888888888888888877754 356666777777776443
No 295
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.53 E-value=8 Score=35.41 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=22.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 001797 318 TLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKA 361 (1012)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (1012)
.++..+.+.+.......+++.+...+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 44555555555555555555555544 24444555555555543
No 296
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=24 Score=40.58 Aligned_cols=252 Identities=11% Similarity=0.059 Sum_probs=118.6
Q ss_pred HHcCCHHHHHHHHHHhhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhH-HHHHHHHHhcCc
Q 001797 709 CKSGNLTEAFQLVNEMPSRGVTP-----DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSF-NALLNGLCKSQK 782 (1012)
Q Consensus 709 ~~~g~~~~A~~l~~~~~~~~~~p-----d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 782 (1012)
...|+..+|.+++.-..-..-.| ..-.+.++.-.++..| ....+++...++....+...+ ..|+-++...|.
T Consensus 368 IH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG--~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 368 IHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHG--RGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcC--ccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 35677777777777654331111 1113333433333333 346666666655544333222 234444554443
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCH-HHHHHHHHHHHHCCC-CCChHHHHH--HHHHHHccCChhHH
Q 001797 783 IFEANKLLEDMADKHITPNHVTY--TILIDYHCKAGTM-KDAEHLLVEMQKRVL-KPNFRTYTS--LLHGYAGIGKRSEM 856 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~-~~A~~~~~~~~~~~~-~p~~~~~~~--l~~~~~~~g~~~~A 856 (1012)
-. .++|+.+.+.-...+.++= ..+.-+++-.|.. .+|+ ++|..... .....+... +.-++...|+-++|
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eai---edm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAI---EDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHH---HHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhh
Confidence 22 2333333322111222211 1122233333322 2222 33332111 112223332 33455667778888
Q ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 857 FALFDEMVERGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 857 ~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
..+.++|... .+|- ..-...++.+|+-.|+..--.+++.-+.... ..|..-+..++-++.-..+.+.......-+.
T Consensus 521 d~lI~el~~d-kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~~~s~V~lLs 598 (929)
T KOG2062|consen 521 DPLIKELLRD-KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQLPSTVSLLS 598 (929)
T ss_pred HHHHHHHhcC-CchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHheeeEecChhhchHHHHHHh
Confidence 8888888742 2331 1224456667777777665555555544443 4555556666666666677777776666554
Q ss_pred hCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHH
Q 001797 935 DKEIKLSHATCCILISS-VYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 935 ~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~ 970 (1012)
+ ...|..-.-..+.-+ .|.---..+|+.+++-|.+
T Consensus 599 e-s~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 599 E-SYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS 634 (929)
T ss_pred h-hcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc
Confidence 4 244433222222222 2222234567777777766
No 297
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.40 E-value=3.1 Score=46.35 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHh------hcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001797 228 TYTSLINAHFRAGNVKAAQRVLFEMEEK------VGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLL 301 (1012)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~~~~~~~~~------~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 301 (1012)
-.+.++.-+-+.|..+.|+.+-..-..+ .|+++.|.+... ..++...|..|.+...++|+++-|.+.|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAK------ELDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCC------CCSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHH------hcCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3556666666666666666654433222 344444444422 2235667777777777777777777777
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 302 KKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTE 373 (1012)
Q Consensus 302 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (1012)
.+..+ |..|.-.|.-.|+.+.-.++.+.....|- +|....++.-.|++++..+++.+
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 76542 45566666666776666666666655541 33333444445555555544433
No 298
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.39 E-value=13 Score=37.03 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 641 QGFIKEAFQLHEKMCESGITPN---IVTYNALIDGLCKSGELERARELFDGIF 690 (1012)
Q Consensus 641 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 690 (1012)
....++|+.-|++.++...+.. -.+...++..+.+.|++++....|.+++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3456667777766665422211 2233445556666666666666666654
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.89 E-value=19 Score=38.03 Aligned_cols=155 Identities=14% Similarity=0.149 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C-
Q 001797 817 TMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAG----IGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKE-----G- 886 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g- 886 (1012)
+..+|..+|+.+.+.|. ......|...|.. ..+..+|..+|+++.+.|..+.......+...|..- -
T Consensus 92 ~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred cHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence 45666666665554432 2223334444433 337778888888887766554323344455444432 1
Q ss_pred -ChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhc----cccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-----
Q 001797 887 -NMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCK----EEEFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAG----- 956 (1012)
Q Consensus 887 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g----- 956 (1012)
+...|...+.++...+ +......++..|.. ..+.++|..+|.++.+.|- ......+..+...|
T Consensus 169 ~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~----~~a~~~~~~~~~~g~g~~~ 241 (292)
T COG0790 169 YDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD----GAACYNLGLMYLNGEGVKK 241 (292)
T ss_pred HHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHhcCCCchh
Confidence 3347999999999987 66777777766643 4588999999999988663 33333344666555
Q ss_pred ----------CHHHHHHHHHHHHHCCCccChhHHH
Q 001797 957 ----------NIDKATRFLESMIKFGWVADSTVMM 981 (1012)
Q Consensus 957 ----------~~~~A~~~~~~~~~~g~~~~~~~~~ 981 (1012)
+...|...+......|.........
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7788888888888887666555554
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.77 E-value=33 Score=40.57 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=60.8
Q ss_pred cCChhHHHHHHHHHHH-cCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHH
Q 001797 850 IGKRSEMFALFDEMVE-RGVEPDG--VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 850 ~g~~~~A~~~~~~~~~-~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
..+.+.|..++..... .+..++. .++..++......+...+|...++...... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 3455667777766543 2222221 223333333333322556666666544332 2333333333344467777777
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 927 LKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMI 969 (1012)
Q Consensus 927 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 969 (1012)
...+..|... ..-...-.||+.+.+...|+.++|...|+.+.
T Consensus 332 ~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777666442 23344455666666666777777777777753
No 301
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.43 E-value=0.96 Score=46.09 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=43.1
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHH
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTP-DNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 786 (1012)
|.++|.+++|++.|...+. ..| +.+++..-..+|.+...+..|..-...++..+.....+|..-+.+-...|+..+|
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455555555555555444 233 4455555555555555555555555555444433334444444444445555555
Q ss_pred HHHHHHHHh
Q 001797 787 NKLLEDMAD 795 (1012)
Q Consensus 787 ~~~~~~~~~ 795 (1012)
.+-++..++
T Consensus 185 KkD~E~vL~ 193 (536)
T KOG4648|consen 185 KKDCETVLA 193 (536)
T ss_pred HHhHHHHHh
Confidence 555555544
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.42 E-value=3.8 Score=39.20 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHV--TYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
.++..++..|++.|+.++|.+.|.++.+....+... .+..++......|++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666666677777777777776666654444332 445555666666666666666655543
No 303
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.21 E-value=20 Score=39.09 Aligned_cols=138 Identities=16% Similarity=0.103 Sum_probs=81.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHH---hCCC--CC---CHHHHHHHHHHHHhcC
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMA---DKHI--TP---NHVTYTILIDYHCKAG 816 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~--~p---~~~~~~~l~~~~~~~g 816 (1012)
...+...+..-.+.++....+++.....-.+.+.-.|++.+|.+++...- ..|. .| ....||.|.-.+.+.|
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~ 297 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLG 297 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehh
Confidence 33344444433343333333444555556677778888888888776542 1121 12 1234567766677777
Q ss_pred CHHHHHHHHHHHHH-------CCCCCCh-----------HHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 001797 817 TMKDAEHLLVEMQK-------RVLKPNF-----------RTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMM 878 (1012)
Q Consensus 817 ~~~~A~~~~~~~~~-------~~~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 878 (1012)
.+.-+..+|.++++ .|+.|.. .+|+ .+-.|...|++-.|.+.|.+.+.. +..++..|..|
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRl 375 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRL 375 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHH
Confidence 77777777776653 3444432 1222 234566788888888888887762 44567788888
Q ss_pred HHHHHh
Q 001797 879 VDAYLK 884 (1012)
Q Consensus 879 ~~~~~~ 884 (1012)
+.++..
T Consensus 376 AEcCim 381 (696)
T KOG2471|consen 376 AECCIM 381 (696)
T ss_pred HHHHHH
Confidence 876653
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.04 E-value=0.38 Score=31.72 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=18.7
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
+|..|+.+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677778888888888888887754
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.02 E-value=8.9 Score=35.41 Aligned_cols=51 Identities=14% Similarity=-0.090 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
..++.+.+..++.-+.-..|..+..-..-+..+...|+|.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445666666666666655555555555555555666666666666666544
No 306
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.56 E-value=1.8 Score=43.06 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=16.4
Q ss_pred ChhHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 001797 328 NLQEAFRLKNEMVTFGIKLNLFTYNALIGGI 358 (1012)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 358 (1012)
.++--...++.|.+.|+..|..+|+.|++.+
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~Llnvf 117 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVF 117 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhC
Confidence 3444444455555555555555565555544
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.21 E-value=31 Score=37.53 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITP---NHVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
..+..++....+.|+++.|...+.++...+... .+.....-+..+...|+..+|+..+++...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566667777777777777777777766532111 233334455666677777777777766655
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.94 E-value=57 Score=40.10 Aligned_cols=138 Identities=20% Similarity=0.179 Sum_probs=64.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 001797 668 ALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDG 747 (1012)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g 747 (1012)
-.++.-.+.|-+++|..++..=.++ -...|.+..+-+.+.+.+++|.-+|+..=+ ...-+.+|..+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~ 979 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG 979 (1265)
T ss_pred HHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence 3334444555566665554311111 122333334444455556665555554321 122344555566
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
+|.+|+.+..++..........-..|+.-+..+++.-+|-++..+.... | .-.+..||+...+++|.....
T Consensus 980 dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 980 DWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred cHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHH
Confidence 6666666555443211111122245556666666666666666655431 1 122344555556666665443
No 309
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.86 E-value=0.68 Score=30.46 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
++..|+..|.+.|++++|+++|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3667888888888999998888886543
No 310
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.59 E-value=24 Score=35.21 Aligned_cols=203 Identities=15% Similarity=0.176 Sum_probs=89.2
Q ss_pred CCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHhhhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----
Q 001797 693 GLTPTVVTYTTIIDG-YCKSGNLTEAFQLVNEMPSRGVTPDN---FVYCTLVDGCCRDGNMEKALSLFLEMVQKG----- 763 (1012)
Q Consensus 693 ~~~p~~~~~~~li~~-~~~~g~~~~A~~l~~~~~~~~~~pd~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 763 (1012)
+..||+..-+..-.. -.+...+++|+.-|++..+..-.... .....++....+.|++++..+.|.+++.--
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445555443332211 12344677777777776653111111 134455666667777777776666654310
Q ss_pred -CCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---
Q 001797 764 -LASTSSFNALLNGLCKSQKIFEANKLLEDMADKH-ITPNHV----TYTILIDYHCKAGTMKDAEHLLVEMQKRVLK--- 834 (1012)
Q Consensus 764 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 834 (1012)
-.+....+.+++.-....+.+--.++++.-++.- -..+.. +-+.|...|...|.+.+-.++++++...-..
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 0111334444444444444444444443322210 001111 2234555555555555555555555432111
Q ss_pred -CC-------hHHHHHHHHHHHccCChhHHHHHHHHHHH-cCCCCCHHHHHHHH----HHHHhcCChHHHHHHH
Q 001797 835 -PN-------FRTYTSLLHGYAGIGKRSEMFALFDEMVE-RGVEPDGVIYSMMV----DAYLKEGNMMKTIKLV 895 (1012)
Q Consensus 835 -p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~----~~~~~~g~~~~A~~~~ 895 (1012)
.| ..+|..-+..|-...+-.....+|++.+. ...-|.+.+...+- ....+.|++++|-.-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHH
Confidence 11 12333334444455555555555555543 23334443332222 3344555555554433
No 311
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.58 E-value=2.7 Score=41.89 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 643 FIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSG----------------ELERARELFDGIFAKGLTPTVVTYTTIID 706 (1012)
Q Consensus 643 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 706 (1012)
.++-.-..+..|.+-|+.-|..+|+.|++.+-+.. +-+-+++++++|...|+.||..+-..+++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444444555556666666666666655443321 12345666666666666666666666666
Q ss_pred HHHHcCC
Q 001797 707 GYCKSGN 713 (1012)
Q Consensus 707 ~~~~~g~ 713 (1012)
++.+.+-
T Consensus 167 ~FGr~~~ 173 (406)
T KOG3941|consen 167 AFGRWNF 173 (406)
T ss_pred Hhccccc
Confidence 6665554
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.54 E-value=3.3 Score=42.35 Aligned_cols=76 Identities=8% Similarity=0.124 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD-----KHITPNHVTYTILI 809 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 809 (1012)
++..++..+...|+.+.+.+.+++++...|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|.+.+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4555666666667777777777777777777677777777777777777777766666543 45666665544443
Q ss_pred H
Q 001797 810 D 810 (1012)
Q Consensus 810 ~ 810 (1012)
.
T Consensus 235 ~ 235 (280)
T COG3629 235 E 235 (280)
T ss_pred H
Confidence 3
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.42 E-value=12 Score=34.49 Aligned_cols=114 Identities=15% Similarity=0.104 Sum_probs=71.1
Q ss_pred HHHHHHccCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccc
Q 001797 843 LLHGYAGIGKRSEMFALFDEMVERGVEPDGV-IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE 921 (1012)
Q Consensus 843 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 921 (1012)
++..-...++.+++..++..+.- +.|... .-..-++.+...|+|.+|+.+++.+.... +..+..-..++.++...|
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~-~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA-PGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHcC
Confidence 33444677889999999888875 667543 33344577888999999999999987775 444555555666666666
Q ss_pred cHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 922 EFYKVLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATR 963 (1012)
Q Consensus 922 ~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~ 963 (1012)
+.+= .....++.+. +.++....+++.+....+...|..
T Consensus 93 D~~W-r~~A~evle~---~~d~~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSW-RRYADEVLES---GADPDARALVRALLARADLEPAHE 130 (160)
T ss_pred ChHH-HHHHHHHHhc---CCChHHHHHHHHHHHhccccchhh
Confidence 5442 2233344442 224555566666665555555444
No 314
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.26 E-value=0.49 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.254 Sum_probs=16.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+|..++.++...|++++|.+.++++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666554
No 315
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.21 E-value=39 Score=37.22 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHC
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSD-LEGACRVFEEMIAC 447 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~ 447 (1012)
..|+..|...+.-+-+.+.+.+.-.+|.+|.... +.++..|..-.......+. ++.|..+|.+.+..
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 4477777777776666666777777777777765 4555555554444444443 77777777777765
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=89.14 E-value=3.5 Score=38.59 Aligned_cols=41 Identities=17% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc
Q 001797 818 MKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER 866 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 866 (1012)
+++|...|+++.. ..|+...|+.-+... .+|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 4455555555554 456666666555443 2344455555443
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.87 E-value=6.2 Score=37.00 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCc-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 749 MEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK-----------IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGT 817 (1012)
Q Consensus 749 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 817 (1012)
+++|+.-|++++..+|....++..++.+|...+. +++|.+.|++..+ ..|+...|+.-+...
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~----- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA----- 123 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----
Confidence 5667777888888888888888888888876653 5666677777776 579999998877765
Q ss_pred HHHHHHHHHHHHHCCC
Q 001797 818 MKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 818 ~~~A~~~~~~~~~~~~ 833 (1012)
.+|-++..++.+.+.
T Consensus 124 -~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 -AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HTHHHHHHHHHHSSS
T ss_pred -HhhHHHHHHHHHHHh
Confidence 346677777766543
No 318
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.81 E-value=59 Score=38.73 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=45.6
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCCH----H---HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCch-----hhHHHHH
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTPDN----F---VYCTLVDG-CCRDGNMEKALSLFLEMVQKGLAST-----SSFNALL 774 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~pd~----~---~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~ 774 (1012)
.....++++|..++.++...-..|+. . .+..+-.. ....|+++.|.++.+..+..-|... ..+..++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567777777777776543112111 1 23333222 2345667777777766665544322 3444555
Q ss_pred HHHHhcCcHHHHHHHHHHHH
Q 001797 775 NGLCKSQKIFEANKLLEDMA 794 (1012)
Q Consensus 775 ~~~~~~g~~~~A~~~~~~~~ 794 (1012)
.+..-.|++++|..+.....
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 505 EAAHIRGELTQALALMQQAE 524 (894)
T ss_pred HHHHHhchHHHHHHHHHHHH
Confidence 55555666666665554443
No 319
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.69 E-value=25 Score=36.93 Aligned_cols=128 Identities=14% Similarity=0.188 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhCCCCCCHhHHHHHHHHHHh--cC----ChhHHHHHHHHHHhCCC---CcCHHHHHHHHHHHHhcCC--
Q 001797 295 EDAKLLLKKMYDLKLNPNEVVYTTLINGFMK--QG----NLQEAFRLKNEMVTFGI---KLNLFTYNALIGGICKAGE-- 363 (1012)
Q Consensus 295 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~-- 363 (1012)
.+...+++.+.+.|+..+..+|.+..-..-. .. ....|..+++.|.+... .++-+.+.+|+.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445666777777777776666543222221 12 24456667777766431 2333444444433 2222
Q ss_pred --HHHHHHHHHHHHHcCCCCChh-hHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHH
Q 001797 364 --IEKAKGLMTEMLRLGINPDTQ-TYNSLIEGCYRENN---MAKAYELLVDMKKRNLSPTAYTCNVI 424 (1012)
Q Consensus 364 --~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~l 424 (1012)
.+.+..+++.+...|+..+.. .+.+-+-+++.... ...+.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 234455555555555544222 22222222221111 23455555555555555544444443
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.37 E-value=4.7 Score=38.63 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=30.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG--VIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
.+..++.-|++.|+.++|.+.|.++.+....|.. ..+..++......|++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4445555555555555555555555543333322 2334444445555555555555444433
No 321
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.20 E-value=1.3 Score=28.36 Aligned_cols=29 Identities=17% Similarity=0.302 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.+..++.++...|++++|++.+++++...
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666666666553
No 322
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.94 E-value=1.1 Score=28.88 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.|..++.+|...|++++|++.++++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 323
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=7.9 Score=37.97 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHH
Q 001797 874 IYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHA 943 (1012)
Q Consensus 874 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 943 (1012)
.+.++..++...|++-++++....++... |.+..+|..-+.+....-+.++|..-+.++++ +.|.-.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~--ldpsla 298 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE--LDPSLA 298 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--cChhhH
Confidence 45667788899999999999999999986 77889999999999999999999999999987 666543
No 324
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.47 E-value=6.8 Score=40.13 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCcCHHHHHHH
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVT-----FGIKLNLFTYNAL 354 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 354 (1012)
++..++..+...|+++.+...+++..... +-+...|..++.+|.+.|+...|+..++++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45667777777778888888887777765 56677777777788777877777777777654 3555554444433
No 325
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.42 E-value=29 Score=32.58 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=11.3
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCH
Q 001797 376 RLGINPDTQTYNSLIEGCYRENNM 399 (1012)
Q Consensus 376 ~~g~~p~~~~~~~li~~~~~~g~~ 399 (1012)
+.++.|+...|..+++.+.+.|++
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCH
Confidence 344444444444444444444443
No 326
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.35 E-value=29 Score=32.56 Aligned_cols=134 Identities=12% Similarity=0.127 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 001797 403 YELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGK 482 (1012)
Q Consensus 403 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 482 (1012)
.++++.+.+.+++|+...+..+++.+.+.|.+..-..+ +..++-+|.......+-.+ .+....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 34556666777788888888888888888876554444 3444445544333322111 22333444444444432
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 483 GVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEML 550 (1012)
Q Consensus 483 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 550 (1012)
=...+..+++.+...|++-+|.++.+..... +......++.+..+.++...-..+++-..
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0113455666677777777777776654221 22222344444445554444444444333
No 327
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.17 E-value=16 Score=32.36 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 869 EPDGVIYSMMVDAYLKEGN---MMKTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 869 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+...+...+++++.+..+ ..+.+.+++.+++...| ........|+-++++.++|++++++.+.+++ .+|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcHH
Confidence 5677788888899887764 55678888888874333 2345666788889999999999999999988 6888776
Q ss_pred HHHHHH
Q 001797 945 CCILIS 950 (1012)
Q Consensus 945 ~~~ll~ 950 (1012)
...+-.
T Consensus 107 a~~Lk~ 112 (149)
T KOG3364|consen 107 ALELKE 112 (149)
T ss_pred HHHHHH
Confidence 665543
No 328
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.12 E-value=42 Score=36.47 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHh
Q 001797 118 LFGAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGV 181 (1012)
Q Consensus 118 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~ 181 (1012)
.+.+++..+...+..+ +|..++. +++ ..|....++-.+...+...|+...|.++.+++
T Consensus 9 ~Y~~~q~~F~~~v~~~-Dp~~l~~-ll~----~~PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 9 AYQEAQEQFYAAVQSH-DPNALIN-LLQ----KNPYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred HHHHHHHHHHHHHHcc-CHHHHHH-HHH----HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777777766655 4443332 222 23456677888889999999999999988887
No 329
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.42 E-value=64 Score=35.65 Aligned_cols=171 Identities=11% Similarity=0.150 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 001797 592 DLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALID 671 (1012)
Q Consensus 592 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 671 (1012)
|.....+++..+...-++.-...+..+|+.-| .+...|..++.+|... ..++-..+++++.+..+. |++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33444455555555555555555555555532 2444555555555554 334455555555554322 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHh
Q 001797 672 GLCKSGELERARELFDGIFAKGLTP--T---VVTYTTIIDGYCKSGNLTEAFQLVNEMPSR-GVTPDNFVYCTLVDGCCR 745 (1012)
Q Consensus 672 ~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~pd~~~~~~l~~~~~~ 745 (1012)
.|-+ ++.+.+..+|.++..+-++. + ...|..++.. -..+.+..+.+...+... |..--.+.+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 55555555555555431110 0 1123333321 123444444444444332 222223334444445555
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhh
Q 001797 746 DGNMEKALSLFLEMVQKGLASTSS 769 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~~~ 769 (1012)
..++.+|++++..+++.+-.+..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhH
Confidence 566666666666555555444433
No 330
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.40 E-value=52 Score=34.58 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=54.2
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHcCCCch----hhHHHHHHHHHhcCc---
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTLVDGCCR--DG----NMEKALSLFLEMVQKGLAST----SSFNALLNGLCKSQK--- 782 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~--- 782 (1012)
+.+.+++.|.+.|+.-+..+|.+..-.... .. ...+|.++|+.|.+..|--+ ..+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666555544432222211 11 23455666666666544211 122222111 1222
Q ss_pred -HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 001797 783 -IFEANKLLEDMADKHITPNHV-TYTILIDYHCKAG---TMKDAEHLLVEMQKRVLKPNFRTYTSLL 844 (1012)
Q Consensus 783 -~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 844 (1012)
.+.+..+|+.+.+.|+..+.. -+.+-+-+++... ...++.++++.+.+.|+++....|..++
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 233445555555555544322 2222222221111 1335555666666666665555555444
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.28 E-value=12 Score=38.19 Aligned_cols=105 Identities=19% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHH
Q 001797 658 GITPNIVTYNALIDGLCKSGELERARELFDGIFAK---GLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNF 734 (1012)
Q Consensus 658 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~ 734 (1012)
|.+....+...++..-....+++.+..++-++... -..|+.. -.+.+.. +-.-++++++.++..=+.-|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 33334444444554445556677777766666532 0011111 1122222 23346667777777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 735 VYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764 (1012)
Q Consensus 735 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 764 (1012)
+++.+++.+.+.+++.+|..+...++....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 888888888888888877777766665543
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.83 E-value=30 Score=31.47 Aligned_cols=50 Identities=10% Similarity=-0.111 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 746 DGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.++.+++..++..+.-..|.....-..-+..+...|+|.+|..+|+++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 45555666666555555555554444455555566666666666666554
No 333
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=49 Score=33.50 Aligned_cols=197 Identities=12% Similarity=0.164 Sum_probs=94.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCch--------hhHHHHHHHHHhcCcHHHHHHHHHHHHh---CCCCC-CHHHHH
Q 001797 739 LVDGCCRDGNMEKALSLFLEMVQKGLAST--------SSFNALLNGLCKSQKIFEANKLLEDMAD---KHITP-NHVTYT 806 (1012)
Q Consensus 739 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p-~~~~~~ 806 (1012)
+.+-..+.+++++|+..+.+++.+|.... .+...+...|...|++..-.+......+ .--.| ......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 44455667778888888888877764322 3445567777777776655544433221 11111 222334
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChH-----HHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCCHHHHH
Q 001797 807 ILIDYHC-KAGTMKDAEHLLVEMQKRVLKPNFR-----TYTSLLHGYAGIGKRSEMFALFDEMVE----RGVEPDGVIYS 876 (1012)
Q Consensus 807 ~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~ 876 (1012)
.|+..+. ....++.-+.+.....+.....+.. .-..++..+.+.|.+.+|+.+.+..+. ..-+|+..+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 4444442 2334555555555555422211111 112345566666666666665554432 22233322221
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcC----CccCHHHHHHHHHH--HhccccHHHHHHHHHHHhh
Q 001797 877 -MMVDAYLKEGNMMKTIKLVDEMFLRG----LVLNQNVYTSLANS--LCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 877 -~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 935 (1012)
.-..+|.+..+..++..-+..+.... +||-.....-|..+ .|...++.-|..+|-++.+
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 11245555555555555544443331 33333333333322 4445555666666555544
No 334
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.79 E-value=3.3 Score=30.07 Aligned_cols=41 Identities=20% Similarity=0.098 Sum_probs=28.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
....++-++.+.|++++|.+..+.+++ ++|++.....+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 345667778888888888888888887 78887776665433
No 335
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=83.66 E-value=1e+02 Score=36.52 Aligned_cols=49 Identities=16% Similarity=0.060 Sum_probs=27.9
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 001797 522 NLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKE 571 (1012)
Q Consensus 522 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 571 (1012)
+......+|.-+.+.|++++|.++..+..+. .......+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3334456677777888888888887444332 233444555556666554
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.62 E-value=1.5 Score=27.91 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=12.6
Q ss_pred HHHHHHHhccccHHHHHHHHHHHhh
Q 001797 911 TSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
..++.++.+.|++++|.+.++++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 337
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.45 E-value=22 Score=39.85 Aligned_cols=99 Identities=17% Similarity=0.092 Sum_probs=49.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 001797 813 CKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 813 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
.+.|+++.|.++..+.. +..-|..|.++....|++..|.+.|..+.+ |..|+-++...|+-+--.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 45566666666554332 345566666666666666666666655432 223333444455544444
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 893 KLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
++-....+.| . .+.-..+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444443 1 11122345556666666665544
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.25 E-value=57 Score=33.30 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHH
Q 001797 737 CTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDM 793 (1012)
Q Consensus 737 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 793 (1012)
......|..+|.+.+|.++.++++..+|-+...+..|+..+...|+--.|.+.++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344455666777777777777777766666666666666666666666665555554
No 339
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.15 E-value=0.78 Score=47.08 Aligned_cols=124 Identities=15% Similarity=0.096 Sum_probs=82.3
Q ss_pred HHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHH
Q 001797 847 YAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYK 925 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 925 (1012)
....|.+++|+++|...++ +.| ....|..-..++.+.++...|++-+..++..+ +....-|.--+.+....|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHH
Confidence 3456778888888887775 444 34455566677788888888888888777775 4445556666667777788888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCcc
Q 001797 926 VLKLLDEMGDKEIKLSHATCCILISSVYEAGNIDKATRFLESMIKFGWVA 975 (1012)
Q Consensus 926 A~~~~~~~~~~g~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~g~~~ 975 (1012)
|.+.+..+.+. .-+...-.|+-...-..+..++-...+++.++..-++
T Consensus 201 aa~dl~~a~kl--d~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~~~ 248 (377)
T KOG1308|consen 201 AAHDLALACKL--DYDEANSATLKEVFPNAGKIEEHRRKYERAREEREIK 248 (377)
T ss_pred HHHHHHHHHhc--cccHHHHHHHHHhccchhhhhhchhHHHHHHHHhccc
Confidence 88888877774 3444445555555556666666666666666654443
No 340
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.50 E-value=8.8 Score=42.56 Aligned_cols=60 Identities=12% Similarity=0.133 Sum_probs=26.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 842 SLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 842 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.|++...+.|...+|..++.+.+... ...+-++..+++++....+.+.|++.++.++++.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 34444444444444444444444321 1233344444444444455555555555544443
No 341
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.40 E-value=1.8 Score=29.97 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=12.0
Q ss_pred HHHHHhccccHHHHHHHHHHHhh
Q 001797 913 LANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 913 l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
|+.+|...|+.+.|.+++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555543
No 342
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=82.37 E-value=23 Score=35.13 Aligned_cols=63 Identities=6% Similarity=0.042 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCChH-------HHHHHHHHHHHcCCc-----cCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 873 VIYSMMVDAYLKEGNMM-------KTIKLVDEMFLRGLV-----LNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
..+..+++.|...|+.+ .|.+.|.++...... ....+...++....+.|++++|.+++.+++.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 34555566666666633 333334443333211 1134444555666666666666666666654
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.29 E-value=16 Score=35.43 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=23.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 882 YLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 882 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
+.+.+...+|+...+.-.+.. |.+...-..+.+.||-.|+|++|...++-+.
T Consensus 11 LL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 344444444444444444333 3334444444444444444444444444433
No 344
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=82.22 E-value=2.2 Score=46.24 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=44.5
Q ss_pred ccCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHH
Q 001797 849 GIGKRSEMFALFDEMVERGVEPDGVIYS-MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVL 927 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 927 (1012)
+.+.++.|+.++.++++ +.|+...|. .-..++.+.+++..|+.-+.++++.. |.-...|..-+.++.+.+.+.+|.
T Consensus 16 ~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred ccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHH
Confidence 34445555555555553 444333322 22244455555555555555555544 323344444444555555555555
Q ss_pred HHHHHHhhCCCCCCHHHHHHH
Q 001797 928 KLLDEMGDKEIKLSHATCCIL 948 (1012)
Q Consensus 928 ~~~~~~~~~g~~p~~~~~~~l 948 (1012)
..++.... +.|+.+...-.
T Consensus 93 ~~l~~~~~--l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 93 LDLEKVKK--LAPNDPDATRK 111 (476)
T ss_pred HHHHHhhh--cCcCcHHHHHH
Confidence 55555544 44554444333
No 345
>PRK09687 putative lyase; Provisional
Probab=81.32 E-value=73 Score=33.24 Aligned_cols=219 Identities=15% Similarity=0.085 Sum_probs=97.1
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCChhh
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEI----EKAKGLMTEMLRLGINPDTQT 385 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~ 385 (1012)
.+|..+....+..+...|. .++...+..+.. .+|...-...+.++++.|+. +++...+..+... .|+...
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 3555555556666666554 333333444433 23555555556666666652 3555666555332 345444
Q ss_pred HHHHHHHHHhcCCH-----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 001797 386 YNSLIEGCYRENNM-----AKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLI 460 (1012)
Q Consensus 386 ~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 460 (1012)
-...+.++...+.. ..+...+..+.. .++..+-...+.++.+.|+ ++|...+-.+++. +|..+-..-+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 44444444443321 122233322222 2244444555555555554 3455555555542 3333333333
Q ss_pred HHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCH
Q 001797 461 QAHLRQN-RFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM 539 (1012)
Q Consensus 461 ~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 539 (1012)
.++.+.+ ....+...+..+.. .++...-..-+.++.+.|+ ..|...+.+..+.+. .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH
Confidence 3333321 12344444444443 2344444445555555554 334444444443311 122334444444443
Q ss_pred HHHHHHHHHHHH
Q 001797 540 QAADRYFQEMLN 551 (1012)
Q Consensus 540 ~~A~~~~~~~~~ 551 (1012)
+|...+..+.+
T Consensus 252 -~a~p~L~~l~~ 262 (280)
T PRK09687 252 -TLLPVLDTLLY 262 (280)
T ss_pred -hHHHHHHHHHh
Confidence 34444444443
No 346
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.06 E-value=1.7 Score=44.73 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=81.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHH
Q 001797 812 HCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG-VIYSMMVDAYLKEGNMMK 890 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 890 (1012)
....|.+++|+++|...+.. .++....|..-..++.+.++...|++-+..+++ +.||. .-|-.-..+....|+|++
T Consensus 124 Aln~G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHH
Confidence 34678888999988888765 345566777777888888888888888888875 66654 334444455566789999
Q ss_pred HHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 891 TIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 891 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
|...+..+.+.++ +..+-..|-.+.-..+..++-...+++..+
T Consensus 201 aa~dl~~a~kld~--dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDY--DEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccc--cHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 9999988888873 444444444555555666665555555544
No 347
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.92 E-value=6.2 Score=38.62 Aligned_cols=89 Identities=9% Similarity=-0.013 Sum_probs=74.3
Q ss_pred HHHHHccCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcccc
Q 001797 844 LHGYAGIGKRSEMFALFDEMVERGVEPDGVIY-SMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 844 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
.+.|....+++.|+..|.+++. +.|...+| .+-+.++.+..+++.+..-..++++.. |.......-++.+......
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred cccccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhcc
Confidence 3457778899999999998885 78877554 467788899999999999999999885 4456778889999999999
Q ss_pred HHHHHHHHHHHhh
Q 001797 923 FYKVLKLLDEMGD 935 (1012)
Q Consensus 923 ~~~A~~~~~~~~~ 935 (1012)
+++|++.+.++..
T Consensus 94 ~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 94 YDEAIKVLQRAYS 106 (284)
T ss_pred ccHHHHHHHHHHH
Confidence 9999999999853
No 348
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.69 E-value=1.3e+02 Score=35.51 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 560 IYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGK 608 (1012)
Q Consensus 560 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 608 (1012)
.+..+|+.+.-.|++++|-...-.|... +...|...+..+...++
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 3444455555555555555555555443 33444444433333333
No 349
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.55 E-value=20 Score=35.32 Aligned_cols=115 Identities=14% Similarity=-0.006 Sum_probs=75.6
Q ss_pred HcCCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHH
Q 001797 710 KSGNLTEAFQLVNEMPSRGVTPDNFV-YCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANK 788 (1012)
Q Consensus 710 ~~g~~~~A~~l~~~~~~~~~~pd~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 788 (1012)
...+++.|+..|.+.+. +.|+..+ |..-+..+.+..+++.+..-..++++..|........++.+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 34567777777777665 4666643 45556667778888888888888888888777777888888888888888888
Q ss_pred HHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 789 LLEDMAD----KHITPNHVTYTILIDYHCKAGTMKDAEHLLV 826 (1012)
Q Consensus 789 ~~~~~~~----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 826 (1012)
.+.+..+ ..+++....+..|..+--+.=...+..++.+
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 8877743 2233444455555544333333334444333
No 350
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.36 E-value=95 Score=33.94 Aligned_cols=122 Identities=8% Similarity=0.033 Sum_probs=65.4
Q ss_pred HHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 001797 393 CYRENNMAKAYELLVDMKKR-NLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEE 471 (1012)
Q Consensus 393 ~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 471 (1012)
....|+.-.|-+-+...+.+ .-.|+..... .......|+++.+...+...... +.....+...+++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 34456665554433333332 2223333222 23344567777777776654432 23344566667777777777777
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 001797 472 AINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANG 518 (1012)
Q Consensus 472 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 518 (1012)
|..+-+.|+...+. +......-.-..-..|-++++.-.++++..-+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777777765544 33322222222334566677777777665543
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.19 E-value=12 Score=36.01 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---ccCHHHHHHHHHHHhccccHHHH
Q 001797 855 EMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGL---VLNQNVYTSLANSLCKEEEFYKV 926 (1012)
Q Consensus 855 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 926 (1012)
+|.+.|-++...+.--++.....|+..|. ..+.++|+.++.++++..- .+|+.++..|+.++.+.|++++|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444433222234444444443332 3455555555555554421 23455555555555555555554
No 352
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.16 E-value=76 Score=32.69 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHH
Q 001797 871 DGVIYSMMVDAYLKEGNMMKTIKLV 895 (1012)
Q Consensus 871 ~~~~~~~l~~~~~~~g~~~~A~~~~ 895 (1012)
|+.....++..|.+.|++.+|...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 6777788888889999888888766
No 353
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.90 E-value=3.3 Score=28.00 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 908 NVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 908 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.+++.|+..|...|++++|+++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777653
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.64 E-value=4.5 Score=28.00 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCccChhHHHHhhh
Q 001797 947 ILISSVYEAGNIDKATRFLESMIKFGWVADSTVMMDLVK 985 (1012)
Q Consensus 947 ~ll~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~ 985 (1012)
.+...|.+.|+.+.|+++++.++..|-.|.......+++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 456679999999999999999998776665555555554
No 355
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.18 E-value=21 Score=36.63 Aligned_cols=102 Identities=17% Similarity=0.226 Sum_probs=61.0
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 001797 343 GIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLG---INP--DTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPT 417 (1012)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 417 (1012)
|.+....+...++..-....+++.+...+-++...- ..| ...+|.- ++-.-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~ir----lllky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIR----LLLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHH----HHHccChHHHHHHHhCcchhccccc
Confidence 444444555555555555556666666665554320 011 1222222 2233466677777777777787788
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 418 AYTCNVIINGLCRCSDLEGACRVFEEMIACG 448 (1012)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g 448 (1012)
..++..+++.+.+.+++.+|..+.-.|+...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888877777777766554
No 356
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.69 E-value=24 Score=34.98 Aligned_cols=93 Identities=20% Similarity=0.127 Sum_probs=59.9
Q ss_pred hcCChHHHHHHHHHHHHc----CCccC--HHHHHHHHHHHhccccHH-------HHHHHHHHHhhCCCCC----CHHHHH
Q 001797 884 KEGNMMKTIKLVDEMFLR----GLVLN--QNVYTSLANSLCKEEEFY-------KVLKLLDEMGDKEIKL----SHATCC 946 (1012)
Q Consensus 884 ~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~g~~p----~~~~~~ 946 (1012)
....+++|++.|.-++-. +.++. +..+..+++.|...|+.+ .|.+.|.++.+..-.| +..+..
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344555666655544332 11222 456777889999999854 5566666665543222 334555
Q ss_pred HHHHH-HHhcCCHHHHHHHHHHHHHCCCccC
Q 001797 947 ILISS-VYEAGNIDKATRFLESMIKFGWVAD 976 (1012)
Q Consensus 947 ~ll~~-~~~~g~~~~A~~~~~~~~~~g~~~~ 976 (1012)
.+++. ..+.|++++|.+.|.+++..+-.+.
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 56666 5689999999999999999776665
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.55 E-value=4.8 Score=27.20 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.+++.++..|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888877664
No 358
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.14 E-value=3.6 Score=26.03 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=11.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
.++.++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444555555555554444
No 359
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.87 E-value=81 Score=37.04 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCccChhHHHHhhhh
Q 001797 953 YEAGNIDKATRFLESMIKFGWVADSTVMMDLVKQ 986 (1012)
Q Consensus 953 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 986 (1012)
.+.|++.+|.+.+-.+++..+.|.......+...
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ----------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 4669999999999999999999988776555443
No 360
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.60 E-value=26 Score=33.76 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChHHHH
Q 001797 819 KDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVER---GVEPDGVIYSMMVDAYLKEGNMMKTI 892 (1012)
Q Consensus 819 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~ 892 (1012)
++|.+.|-++...+.-.++.....|+..|. .-+.++++.++..+++. +-.+|+..+..|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666655555444444444444444443 44566666666666651 22446666777777777777766664
No 361
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.58 E-value=5.8 Score=25.32 Aligned_cols=30 Identities=10% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 873 VIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 873 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.+|..++..|...|++++|.+.++++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 357778888888888888888888887763
No 362
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=76.95 E-value=1.1e+02 Score=32.76 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhcC---C---------HHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCC
Q 001797 730 TPDNFVYCTLVDGCCRDG---N---------MEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKH 797 (1012)
Q Consensus 730 ~pd~~~~~~l~~~~~~~g---~---------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 797 (1012)
+-|..+|..++..--..- . .+.-+.+++++++.+|.+...+..++..+.+..+.++..+.+++++...
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 345667777765432211 1 3445666777777777666666667777777667777777777776641
Q ss_pred CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 001797 798 ITPNHVTYTILIDYHCK---AGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 798 ~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 829 (1012)
+.+...|...++.... .-.+++....|.+.+
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 2245556555554432 223455555554443
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.51 E-value=30 Score=38.91 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=49.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 001797 290 KNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKG 369 (1012)
Q Consensus 290 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (1012)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|....+ |..|+-.+...|+-+--..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 456666665554442 2445566666666666666666666655543 2344444445555544444
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 370 LMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVD 408 (1012)
Q Consensus 370 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 408 (1012)
+-....+.| .-|. .+ .+|...|+++++.+++.+
T Consensus 714 la~~~~~~g-~~N~-AF----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQG-KNNL-AF----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhc-ccch-HH----HHHHHcCCHHHHHHHHHh
Confidence 444444433 1222 22 234455666666665543
No 364
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.20 E-value=4.7 Score=43.83 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=72.1
Q ss_pred HHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHH
Q 001797 707 GYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTL-VDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 707 ~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 785 (1012)
-+...+.++.|+.++.++++ ..|+...|... ..++.+.+++..|+.=+.++++..|.....|..-+.++.+.+.+.+
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 34456677788888888777 46655544333 3567777888888888888888877777777777777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 001797 786 ANKLLEDMADKHITPNHVTYTILIDYH 812 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p~~~~~~~l~~~~ 812 (1012)
|+..|+.... +.|+..-....+.-|
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 8888887766 567666555555544
No 365
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.14 E-value=3.6 Score=25.26 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=15.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+|..++.++...|++++|...+.+.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 445555666666666666666665554
No 366
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=75.70 E-value=1.2e+02 Score=32.51 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001797 695 TPTVVTYTTIIDGYCKSGN------------LTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQK 762 (1012)
Q Consensus 695 ~p~~~~~~~li~~~~~~g~------------~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 762 (1012)
+-|+.+|-.++..--..-. .+.-+.+++++++. .+.+...+..++..+.+..+.++..+.+++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4578999988865433211 45667889998887 2345567788888888999999999999999999
Q ss_pred CCCchhhHHHHHHHHHh---cCcHHHHHHHHHHHH
Q 001797 763 GLASTSSFNALLNGLCK---SQKIFEANKLLEDMA 794 (1012)
Q Consensus 763 ~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 794 (1012)
.|.+...|...++.... .-.+.+...+|.+.+
T Consensus 95 ~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 95 NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 99988888777665543 234556665555544
No 367
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=75.47 E-value=1.8e+02 Score=34.49 Aligned_cols=42 Identities=14% Similarity=0.224 Sum_probs=25.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhC
Q 001797 459 LIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKA 501 (1012)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 501 (1012)
+|--+.|+|++++|.++..+.... .......+...+..|...
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 445566899999999988554432 222334556666666654
No 368
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.31 E-value=1.4e+02 Score=33.05 Aligned_cols=455 Identities=12% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHhCC--CHHHHHHHHHHHHHCCCCCchhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHH------HHH
Q 001797 494 LISGLCKAK--KMEDARSCLVEMTANGLKPNLYTYGAFIRE---YTKTGNMQAADRYFQEMLNCGIAPNDI------IYT 562 (1012)
Q Consensus 494 li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~ 562 (1012)
+...+-..| +...++++++......+..-..+-..|--+ +.-..+++.|..-++......-+.... ++.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 563 TLIDGHCKEG-NVKEAFSTFRCMLGRGILPDLKTYSV-----LIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLIS 636 (1012)
Q Consensus 563 ~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 636 (1012)
.|.+.|+... .+..|..++++.++. ..+...|.. |+....-..++..|.+++.---+. -.+-...|..++-
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaiel--sq~~p~wsckllfQLaql~~idkD~~sA~elLavga~s-Ad~~~~~ylr~~f 169 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIEL--SQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAES-ADHICFPYLRMLF 169 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHH--hcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccc-cchhhhHHHHHHH
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCC--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC
Q 001797 637 GFCK---------QGFIKEAFQLHEKMCESGITPN--------IVTYNALIDGLCKSGELERARELFDGIFAK---GLTP 696 (1012)
Q Consensus 637 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p 696 (1012)
.+.+ ..+++.+.....++.+. ..+| ++..+.-+..|...|+...+...++++... +..+
T Consensus 170 tls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~ 248 (629)
T KOG2300|consen 170 TLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTS 248 (629)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCC
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch--h------
Q 001797 697 TVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST--S------ 768 (1012)
Q Consensus 697 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~------ 768 (1012)
+ .+....=-..--..++.-+.+. ..+.-+|......-...|-+++|.++-++++..--... .
T Consensus 249 ~--------~~h~e~ilgsps~~l~~wlpke--qicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sril 318 (629)
T KOG2300|consen 249 S--------RGHDEKILGSPSPILFEWLPKE--QICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRIL 318 (629)
T ss_pred C--------CCccccccCCCChHHHhhccHh--hhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHH
Q ss_pred ------hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 001797 769 ------SFNALLNGLCKSQKIFEANKLLEDMADKHITPNH---------VTYTILIDYHCKAGTMKDAEHLLVEMQKRVL 833 (1012)
Q Consensus 769 ------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 833 (1012)
....++.+-.-.|++.+|++-...|.+-...-.. ..-..++-.++..|.+++|+..|....+.-.
T Consensus 319 sm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~ 398 (629)
T KOG2300|consen 319 SMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTE 398 (629)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhh
Q ss_pred CCChHHHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 834 KPNFRTYT--SLLHGYAGIGKRSEMFALFDEMVERGVEPD-----------GVIYSMMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 834 ~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
..|...+. .++..|.+.|+-+.-.++++. +.|+ ...+...+-.....|++.||...+.+.++
T Consensus 399 ~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~-----i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 399 SIDLQAFCNLNLAISYLRIGDAEDLYKALDL-----IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHHHHHHHhHHHHHHHhccHHHHHHHHHh-----cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Q ss_pred cCCccC-----HHHHHHHHHHHhccccHHHHHHHHHHHhh-CCCCCCHHHHHHHHHH----HHhcCC--HHHHHHHHHH
Q 001797 901 RGLVLN-----QNVYTSLANSLCKEEEFYKVLKLLDEMGD-KEIKLSHATCCILISS----VYEAGN--IDKATRFLES 967 (1012)
Q Consensus 901 ~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~g~~p~~~~~~~ll~~----~~~~g~--~~~A~~~~~~ 967 (1012)
..-..| ......|+.+....|+..++.+...-..+ ..--||.+...|-.+- +...|+ .++..+.+.+
T Consensus 474 manaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 474 MANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
No 369
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=75.28 E-value=3.4 Score=24.71 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=8.8
Q ss_pred HHHHHHHhccccHHHHHHHH
Q 001797 911 TSLANSLCKEEEFYKVLKLL 930 (1012)
Q Consensus 911 ~~l~~~~~~~g~~~~A~~~~ 930 (1012)
..++.++...|++++|+.++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33444444444444444443
No 370
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.01 E-value=1.2e+02 Score=31.57 Aligned_cols=55 Identities=16% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHHccCChhHHHHHHHHH
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR---TYTSLLHGYAGIGKRSEMFALFDEM 863 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 863 (1012)
.|.-+-.+.|+..+|.+.++.+.+. .|-.. +...|+.++....-|.+...++.+-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455778888888888877652 22111 2335666666665555555544443
No 371
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=73.98 E-value=1.1e+02 Score=31.45 Aligned_cols=165 Identities=16% Similarity=0.105 Sum_probs=82.4
Q ss_pred hcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH----HHHhCCCCCChhhHHHHHHHHHhcCCh
Q 001797 167 KIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYD----VMLEAKVTPDVYTYTSLINAHFRAGNV 242 (1012)
Q Consensus 167 ~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~----~m~~~~~~~~~~~~~~li~~~~~~g~~ 242 (1012)
+++++++|++++..- ...+.+.|+...|.++-. -....+.+.|...-..++..+...+.-
T Consensus 2 ~~kky~eAidLL~~G----------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG----------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HTT-HHHHHHHHHHH----------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred ccccHHHHHHHHHHH----------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 467788888776554 234566666655444333 233345556665555666555544432
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH
Q 001797 243 KAAQRVLFEMEEKVGAIDEAFELKESMIHKGLVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLING 322 (1012)
Q Consensus 243 ~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 322 (1012)
+..+.-| .+.|+.|- -.......|......+...|.+.|++.+|+.-|-.- -.++...+..++..
T Consensus 66 ~p~r~~f---------i~~ai~WS--~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~ 130 (260)
T PF04190_consen 66 EPERKKF---------IKAAIKWS--KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEE 130 (260)
T ss_dssp -TTHHHH---------HHHHHHHH--HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHH
T ss_pred cchHHHH---------HHHHHHHH--ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHH
Confidence 2222222 23555555 111233356777888889999999999998766432 12333333334433
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 001797 323 FMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRL 377 (1012)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (1012)
....|...++ |.+.-. .+-.|.-.|+...|...++...+.
T Consensus 131 ~~~~~~~~e~--------------dlfi~R-aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 131 WSTKGYPSEA--------------DLFIAR-AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTSS--H--------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCCcch--------------hHHHHH-HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3334443333 111111 223455678888888888777654
No 372
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.81 E-value=37 Score=28.15 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 001797 754 SLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP-NHVTYTILIDYHCKAGT 817 (1012)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 817 (1012)
.-++..++.+|.+..+...++..+...|++++|++.+-.+++..... +...-..|+..+.-.|.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 44556666777777777778888888888888887777776653222 23333445555444443
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.75 E-value=34 Score=28.53 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=21.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001797 287 GFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFG 343 (1012)
Q Consensus 287 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (1012)
.+..+|+|++|..+.+.. +.||...|..|..+ +.|--+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 344445555554444333 24444444433332 3333333333444444333
No 374
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.22 E-value=75 Score=29.06 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=47.8
Q ss_pred HHccCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhcccc
Q 001797 847 YAGIGKRSEMFALFDEMVERGVEPDG-VIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEE 922 (1012)
Q Consensus 847 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 922 (1012)
-...++.+++..++..+.- +.|+. +.-..-++.+...|+|.+|+.+++++.+.+ +..+..-..++.++...||
T Consensus 20 aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA-GAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHhcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC-CCchHHHHHHHHHHHhcCC
Confidence 3457888888888888875 56643 333334567788899999999999988876 2223333444445554444
No 375
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.21 E-value=1.6e+02 Score=32.83 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 001797 666 YNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCR 745 (1012)
Q Consensus 666 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~ 745 (1012)
..+++..+...-...-...+..+|+..| .+...|..++..|... ..++-..+++++.+..+. |.+.-..|+..|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3444445554444555555555555432 2344455555555544 334445555555543221 22222233333322
Q ss_pred cCCHHHHHHHHHHHHHc
Q 001797 746 DGNMEKALSLFLEMVQK 762 (1012)
Q Consensus 746 ~g~~~~A~~~~~~~~~~ 762 (1012)
++.+.+..+|.+++..
T Consensus 145 -ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 145 -IKKSKAAEFFGKALYR 160 (711)
T ss_pred -hchhhHHHHHHHHHHH
Confidence 4555555555555443
No 376
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.89 E-value=5.7 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.004 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 001797 157 VFEMLIDGYRKIGFLDDAAIVFF 179 (1012)
Q Consensus 157 ~~~~l~~~~~~~g~~~~A~~~f~ 179 (1012)
+...|..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567778888888888877764
No 377
>PRK09687 putative lyase; Provisional
Probab=71.95 E-value=1.3e+02 Score=31.36 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 664 VTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
.+-...+.++.+.++ ++|...+-.+..
T Consensus 143 ~VR~~a~~aLg~~~~-~~ai~~L~~~L~ 169 (280)
T PRK09687 143 NVRFAVAFALSVIND-EAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHHHHhccCC-HHHHHHHHHHhc
Confidence 333344444444443 334444444443
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.61 E-value=12 Score=29.61 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=19.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHHH
Q 001797 745 RDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~ 787 (1012)
...+.++|+..|+.+++..+.+. .++..|+.+|+..|++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555444333 23333444444444444443
No 379
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=71.10 E-value=64 Score=28.85 Aligned_cols=82 Identities=16% Similarity=0.092 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHHHH
Q 001797 188 VPGLLCCNSILNDLLRANKL---KLFWKVYDVMLEAK-VTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAF 263 (1012)
Q Consensus 188 ~~~~~~~~~ll~~l~~~~~~---~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~ 263 (1012)
.++..+-..+.-+|+++.+. .+...+++.+.... +..+-....-+.-++.|.++++.++++.+.+.+..++..+|.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 56667777777788887654 45667888887632 332333333455567899999999999998888877788887
Q ss_pred HHHHHH
Q 001797 264 ELKESM 269 (1012)
Q Consensus 264 ~~~~~~ 269 (1012)
.+-+.+
T Consensus 109 ~Lk~~i 114 (149)
T KOG3364|consen 109 ELKETI 114 (149)
T ss_pred HHHHHH
Confidence 765443
No 380
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.48 E-value=1.4e+02 Score=31.12 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCccCHH-HHH
Q 001797 838 RTYTSLLHGYAGIGKRSEMFALFDEMVE----RGVEPDGVIYS-MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQN-VYT 911 (1012)
Q Consensus 838 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 911 (1012)
..+.....-|++.|+.+.|.+.+.+..+ .|.+-|...+. .++-.|....-..+-++..+.+.+.|..-+.. -+.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3556666778888888888777665543 35555543332 33344445555666666667777776322211 111
Q ss_pred H-HHHHHhccccHHHHHHHHHHHhh
Q 001797 912 S-LANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 912 ~-l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
. -+--+....++.+|-.++-....
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 1 12234455777777777766653
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.04 E-value=17 Score=40.39 Aligned_cols=99 Identities=16% Similarity=0.041 Sum_probs=62.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCch-hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 001797 744 CRDGNMEKALSLFLEMVQKGLAST-SSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAE 822 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 822 (1012)
...|+...|...+..+....|... .....|++.+.+.|...+|-.++.+.+... ...+.++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 345777777777777766665544 566667777777777777777776666543 334556666777777777777777
Q ss_pred HHHHHHHHCCCCCChHHHHHHH
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLL 844 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~ 844 (1012)
+.|+.+.+. .+.+.+.-+.|.
T Consensus 697 ~~~~~a~~~-~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 697 EAFRQALKL-TTKCPECENSLK 717 (886)
T ss_pred HHHHHHHhc-CCCChhhHHHHH
Confidence 777776653 122344444443
No 382
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.47 E-value=43 Score=27.99 Aligned_cols=61 Identities=23% Similarity=0.356 Sum_probs=40.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH
Q 001797 319 LINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTY 386 (1012)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 386 (1012)
-+..+..+|+|++|..+.+.+ +.||...|.+|- -.+.|--+++..-+.+|...| .|....|
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 334566788888888877665 367877776653 336677777777777777665 4444444
No 383
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.30 E-value=30 Score=35.92 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=64.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHHH-cCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHH
Q 001797 839 TYTSLLHGYAGIGKRSEMFALFDEMVE-RGVEPD--GVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLAN 915 (1012)
Q Consensus 839 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 915 (1012)
.|.-=++-|.+..++..|...|.+-+. ..-.|| ...|.+-+.+..-.|++..|+.-...++... |....+|..-+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRGAK 161 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhhhH
Confidence 455566777777777777777777765 233343 3456666666666777777777777777775 445666666677
Q ss_pred HHhccccHHHHHHHHHHHhh
Q 001797 916 SLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 916 ~~~~~g~~~~A~~~~~~~~~ 935 (1012)
++....++.+|..+.++...
T Consensus 162 c~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 77777777777777766643
No 384
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.11 E-value=1.5e+02 Score=30.92 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCHhHHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCcCHHHHH-H
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYD----LKLNPNEVVYTTLING-FMKQGNLQEAFRLKNEMVTFGIKLNLFTYN-A 353 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~ 353 (1012)
.+-....-||+-|+-+.|.+.+.+-.+ .|..-|++.+..-+.. |....-+.+-++..+.+.+.|...+-..-. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 455566778888888888877765543 4666676665443333 333334555666666666666543322111 1
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHH
Q 001797 354 LIGGIC-KAGEIEKAKGLMTEML 375 (1012)
Q Consensus 354 li~~~~-~~g~~~~A~~~~~~m~ 375 (1012)
-=..|| ...++.+|..+|-+.+
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHc
Confidence 111222 2356666666665554
No 385
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.80 E-value=71 Score=26.96 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHH
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNA 772 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 772 (1012)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|..+++.+..+.......|..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 455556666666788888888888888988889988888888877654333234433
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.54 E-value=1.4e+02 Score=30.24 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 001797 771 NALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHC-KAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 771 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 829 (1012)
..++....+.|+++++.+.++++.+.+...+..--+.+..+|- ..|....+.+.+..+.
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 3456666777777777777777777655555555555555552 2334444555554443
No 387
>PRK10941 hypothetical protein; Provisional
Probab=68.16 E-value=38 Score=34.89 Aligned_cols=73 Identities=7% Similarity=-0.029 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 001797 876 SMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS 951 (1012)
Q Consensus 876 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~ 951 (1012)
.++-.+|.+.++++.|+...+.++... |.++.-+.--+-+|.+.|.+..|..-++..++ ..|+++....+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~--~~P~dp~a~~ik~q 257 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE--QCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--hCCCchhHHHHHHH
Confidence 345567788888888888888888886 66777788788888888888888888888876 46777766555433
No 388
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=67.72 E-value=35 Score=28.33 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 001797 716 EAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKG 763 (1012)
Q Consensus 716 ~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 763 (1012)
++.+-++.+....+.|++.+..+.+.+|.+.+++..|..+++.+..+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~ 72 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC 72 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 445555566666677888888888888888888888888887766443
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=67.11 E-value=78 Score=34.77 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=9.4
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 001797 813 CKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 813 ~~~g~~~~A~~~~~~~~~~ 831 (1012)
...+++..|.+++..+...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR 160 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh
Confidence 3445555555555555443
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.19 E-value=4.8e+02 Score=35.58 Aligned_cols=151 Identities=13% Similarity=0.053 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 001797 353 ALIGGICKAGEIEKAKGLMTEMLRLGI--NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430 (1012)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 430 (1012)
+|..+-.++|.+.+|...++.-..... .-....|..+...|..-++++....+...-.. .| .....|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 344455567777777777777311100 11223344444467777777766655543111 11 12233445566
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHhCCCHHHHHH
Q 001797 431 CSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSL-ISGLCKAKKMEDARS 509 (1012)
Q Consensus 431 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 509 (1012)
.|++..|...|+.+...+ ++...+++.++......|.++..+...+...... .+....++++ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 677777777777777654 2235566666655556666666666555444321 1122222222 222345555555544
Q ss_pred HH
Q 001797 510 CL 511 (1012)
Q Consensus 510 ~~ 511 (1012)
.+
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
No 391
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=65.10 E-value=5.2 Score=35.07 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCccChhHHHHhhhh------hhcccccccccccHHHHHHhcccc
Q 001797 963 RFLESMIKFGWVADSTVMMDLVKQ------DQNDANSENTSNSWKEAAAIGIAD 1010 (1012)
Q Consensus 963 ~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 1010 (1012)
++.+++...|+.|+......-+.. |...++....+|+.++|+||||+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~ 75 (116)
T PF14432_consen 22 ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLIN 75 (116)
T ss_pred HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccc
Confidence 667778888999888776332222 233456677889999999999987
No 392
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.06 E-value=43 Score=32.60 Aligned_cols=58 Identities=19% Similarity=0.134 Sum_probs=26.4
Q ss_pred HHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGL 764 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 764 (1012)
+.+.+.+.+.+|+.+.++-++. -+.|...-..+++.++-.|++++|..-++.+-+..|
T Consensus 9 seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 3444445555555555444433 122333334444455555555555555444444443
No 393
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.96 E-value=2e+02 Score=32.19 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 001797 529 FIREYTKTGNMQAADRYFQEMLNCGIAPN 557 (1012)
Q Consensus 529 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 557 (1012)
++...+..|+.+ +.+.+++.|..++
T Consensus 205 ~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 205 ALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 333334455543 3334444554444
No 394
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.15 E-value=1.9e+02 Score=32.24 Aligned_cols=123 Identities=11% Similarity=0.080 Sum_probs=56.2
Q ss_pred HHhCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--HHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001797 269 MIHKGLVPDCFT--YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEV--VYTTLINGFMKQGNLQEAFRLKNEMVTFGI 344 (1012)
Q Consensus 269 ~~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (1012)
+++.|..|+... ..+.+...++.|+.+-+. .+.+.|..|+.. ...+.+...+..|+.+....+++ .|.
T Consensus 21 Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~ 92 (413)
T PHA02875 21 LLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGK 92 (413)
T ss_pred HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCC
Confidence 344566655432 233444455667765433 334445444432 11234555567777766555443 222
Q ss_pred CcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh--HHHHHHHHHhcCCHHHHH
Q 001797 345 KLNLF---TYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQT--YNSLIEGCYRENNMAKAY 403 (1012)
Q Consensus 345 ~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~ 403 (1012)
..+.. .-.+.++..+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 93 ~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 93 FADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred cccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 11110 0123334445566654 3444445555554322 123444555666654433
No 395
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.10 E-value=66 Score=33.55 Aligned_cols=97 Identities=16% Similarity=0.110 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-HHHHHHH
Q 001797 803 VTYTILIDYHCKAGTMKDAEHLLVEMQKRV-LKP--NFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPD-GVIYSMM 878 (1012)
Q Consensus 803 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 878 (1012)
..|.-=++-|.+..++..|...|.+-++.. -.| +.+.|+.-..+....|++..|+.-...++. ++|+ ...|..-
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhh
Confidence 356666777889999999999998877642 223 455777777777788999999988888775 6774 4566677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 001797 879 VDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 879 ~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
+.++....++.+|..+.+..+..
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Confidence 78888999999999888877554
No 396
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=62.88 E-value=58 Score=27.13 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=18.9
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 648 FQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIF 690 (1012)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 690 (1012)
.+-++.+......|++.+..+-+.+|.+.+++..|..+|+.+.
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444443
No 397
>PRK12798 chemotaxis protein; Reviewed
Probab=62.06 E-value=2.4e+02 Score=30.80 Aligned_cols=151 Identities=15% Similarity=0.164 Sum_probs=80.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHhcCCHH
Q 001797 676 SGELERARELFDGIFAKGLTPTVVTYTTIIDGY-CKSGNLTEAFQLVNEMPSRGVTPDNF----VYCTLVDGCCRDGNME 750 (1012)
Q Consensus 676 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~~~~~~~~pd~~----~~~~l~~~~~~~g~~~ 750 (1012)
.|+.+++.+.+..+.....++....|-.|+.+- ....++.+|+++|+...- ..|... ....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 466667777666666555555556666665543 345566777777776543 233222 2333344455667777
Q ss_pred HHHHHHHHHHHcCCCchh---hHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 001797 751 KALSLFLEMVQKGLASTS---SFNALLNGLCKSQKIFEANKLLEDMADKHITPN--HVTYTILIDYHCKAGTMKDAEHLL 825 (1012)
Q Consensus 751 ~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 825 (1012)
++..+-.........++. .+..++..+.+.++-..- +.+..++.. +.|+ ...|..+...-.-.|+.+-|.-.-
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 777776666666555542 222333344433321111 123333332 2222 346666666666777777777666
Q ss_pred HHHHH
Q 001797 826 VEMQK 830 (1012)
Q Consensus 826 ~~~~~ 830 (1012)
.+.+.
T Consensus 281 ~~A~~ 285 (421)
T PRK12798 281 ERALK 285 (421)
T ss_pred HHHHH
Confidence 66655
No 398
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=62.02 E-value=3.7 Score=37.79 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=25.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 320 INGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMT 372 (1012)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (1012)
|..+.+.+..+....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33444445555555555555544433445555555555555555454444444
No 399
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=61.03 E-value=3.3e+02 Score=31.99 Aligned_cols=94 Identities=10% Similarity=-0.012 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 001797 383 TQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQA 462 (1012)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 462 (1012)
...|..-+.-+...++.. ...+++++.+-...+...-.-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+..
T Consensus 372 ~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~ 447 (566)
T PF07575_consen 372 HSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSW 447 (566)
T ss_dssp TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHH
Confidence 334444444433333222 44455555443333444555566666666666666666665544321 12234444555
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 001797 463 HLRQNRFEEAINILKGMT 480 (1012)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~ 480 (1012)
+.+.|+......+.+.+.
T Consensus 448 ~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 448 FIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HH----------------
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666555555544
No 400
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=60.66 E-value=2.6e+02 Score=30.62 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=15.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 001797 282 SLMVDGFCKNKRLEDAKLLLKKM 304 (1012)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~~ 304 (1012)
..+|+-|+..|++.-|..-+.++
T Consensus 54 ~sii~eyfstgdv~vaa~dl~el 76 (645)
T KOG0403|consen 54 VSIIDEYFSTGDVVVAASDLKEL 76 (645)
T ss_pred HHHHHHHccCCCchhhHHHHHHh
Confidence 55677777777777776555444
No 401
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.04 E-value=1.1e+02 Score=25.96 Aligned_cols=39 Identities=8% Similarity=0.073 Sum_probs=13.5
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 335 LKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTE 373 (1012)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (1012)
-++.+...++.|++....+.+.+|-+.+++.-|.++|+-
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~ 70 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEG 70 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333333333333333333333333444444433333
No 402
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.99 E-value=2.2e+02 Score=29.51 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHh-cC-ChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCChhhH
Q 001797 153 SGGVVFEMLIDGYRK-IG-FLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLEA-KVTPDVYTY 229 (1012)
Q Consensus 153 ~~~~~~~~l~~~~~~-~g-~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~-~~~~~~~~~ 229 (1012)
.++.+...|++.... .+ +...-.++.+-++...|-.++..+--..+..|++.+++...+++++.-... ++..|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 366778888887776 33 333334555555455566777777888999999999999999999887765 677889999
Q ss_pred HHHHHHHHhcCChHHHHHHH
Q 001797 230 TSLINAHFRAGNVKAAQRVL 249 (1012)
Q Consensus 230 ~~li~~~~~~g~~~~A~~~~ 249 (1012)
..+|+.....|+..-.+++.
T Consensus 242 ~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHh
Confidence 99999999999966554443
No 403
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.86 E-value=4.1e+02 Score=32.63 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 001797 385 TYNSLIEGCYRENNMAKAYELLVDMKKR 412 (1012)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 412 (1012)
-|..|+..|...|+.++|++++.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3667777777777777777777777653
No 404
>PRK11619 lytic murein transglycosylase; Provisional
Probab=59.09 E-value=3.8e+02 Score=32.00 Aligned_cols=403 Identities=9% Similarity=0.025 Sum_probs=197.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001797 497 GLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKE 576 (1012)
Q Consensus 497 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 576 (1012)
...+.|++..+.++...+....+ .....|..+.... .....++...++++-- +.+.....-...+..+.+.+++..
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHH
Confidence 34678888888877776643322 1222333332211 1224555544444321 112223333344445566777776
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH--HHHHHHHH
Q 001797 577 AFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKE--AFQLHEKM 654 (1012)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~ 654 (1012)
....+.. .+.+...-.....+....|+.++|......+-..|.. .+..+..++..+.+.|.... ..+-+..+
T Consensus 118 ~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 6653211 2445555566777888889988888777777655543 45667778888777665443 33333344
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHH
Q 001797 655 CESGITPNIVTYNALIDGLCKSGELERARELFDGIFAK---------GLTPTVVTYTTIIDGYC--KSGNLTEAFQLVNE 723 (1012)
Q Consensus 655 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~li~~~~--~~g~~~~A~~l~~~ 723 (1012)
...| +......+...+. .+.....+.+..+... .+.|+...-..++.++. ...+.+.|..++..
T Consensus 192 l~~~---~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~ 266 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPS 266 (644)
T ss_pred HHCC---CHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4433 2222333333221 1111111222222211 11122211111122222 34456777777777
Q ss_pred hhhC-CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC
Q 001797 724 MPSR-GVTPDNF--VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITP 800 (1012)
Q Consensus 724 ~~~~-~~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 800 (1012)
.... ++.++.. ++..+.......+..++|...+....... .+.......+..-...++++.+...+..|-... ..
T Consensus 267 ~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~ 344 (644)
T PRK11619 267 LVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KE 344 (644)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-cc
Confidence 6433 2332222 23333322223222455666655543322 223334444445557788887777777764421 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCCh---hHH-HHHHHHHHHcCCCCCHHHHH
Q 001797 801 NHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKR---SEM-FALFDEMVERGVEPDGVIYS 876 (1012)
Q Consensus 801 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~~A-~~~~~~~~~~~~~p~~~~~~ 876 (1012)
...-.--++.++...|+.++|..+|+++.. ..+ -|..|... +.|.. ... ...-... +..++ -.
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~~----~~~~~--~~ 411 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDKAPKPDSA----LTQGP--EM 411 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCCCCchhhh----hccCh--HH
Confidence 233333456666667888888888887642 122 22222211 11211 000 0000000 00011 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
.-+..+...|+..+|...+..+.... +..-...++....+.|.++.++.....
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~~---~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVASR---SKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 23355677888888888888877752 455666777777788888877766543
No 405
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=58.48 E-value=1.3e+02 Score=35.07 Aligned_cols=47 Identities=15% Similarity=0.289 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhhh
Q 001797 680 ERARELFDGIFAKGLTPTV---VTYTTIIDGYCKSGNLTEAFQLVNEMPS 726 (1012)
Q Consensus 680 ~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~~~~ 726 (1012)
++-...+++|..+--.|++ .+...++-.|....+++..+++.+.+..
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~ 229 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKR 229 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHh
Confidence 4444566666655223333 3444555566667777777777777764
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.29 E-value=1.7e+02 Score=29.58 Aligned_cols=57 Identities=4% Similarity=-0.062 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCC-RDGNMEKALSLFLEM 759 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 759 (1012)
.++....+.|+++++..+++++...+...+..--+.+..+|- ..|....+...+...
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 355666677777777777777777655555555555544442 223333444444433
No 407
>PRK10941 hypothetical protein; Provisional
Probab=57.40 E-value=1.2e+02 Score=31.45 Aligned_cols=60 Identities=15% Similarity=-0.047 Sum_probs=40.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 737 CTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 737 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
+.+-.+|.+.++++.|+.+.+.++...|+++.-+.--+-.|.+.|.+..|..-++..++.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455666677777777777777777776666666666677777777777666666654
No 408
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=55.64 E-value=4.5 Score=37.25 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 001797 284 MVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGE 363 (1012)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (1012)
+|..+-+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +.+-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566667788888888888887665566777788888888887777777776621 11223344555555555
Q ss_pred HHHHHHHHHH
Q 001797 364 IEKAKGLMTE 373 (1012)
Q Consensus 364 ~~~A~~~~~~ 373 (1012)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.55 E-value=1.2e+02 Score=25.14 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 872 GVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 872 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
......++..+...|++++|++.+-.++..
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344444444444555555555544444444
No 410
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=55.50 E-value=20 Score=34.94 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHccCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 846 GYAGIGKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 846 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
...+.|+.+.|.+++.++++ +.| +...|..++..-.+.|+++.|.+.|++.++..
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 34567888899999999885 556 56788889988889999999999999999886
No 411
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=55.43 E-value=4.4e+02 Score=31.61 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCccCHH-HHHHHHHHHhccccHHHHHHHH
Q 001797 853 RSEMFALFDEMVERGVEPDGVIYSMMVDA-YLKEGNMMKTIKLVDEMFLRGLVLNQN-VYTSLANSLCKEEEFYKVLKLL 930 (1012)
Q Consensus 853 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~ 930 (1012)
+..|...|.+.......+...+....+.. +.-.++.+.|..+++..+..+.. +.. .|...++.-...|+...|++++
T Consensus 442 F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~-~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 442 FNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGG-SIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcc-hHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 34445555444432223322333333322 23457889999999888887632 333 6777777778889999999988
Q ss_pred HHHhhCCCCCCHHHH-HHHHHHH-HhcCCHHHHHHHHH
Q 001797 931 DEMGDKEIKLSHATC-CILISSV-YEAGNIDKATRFLE 966 (1012)
Q Consensus 931 ~~~~~~g~~p~~~~~-~~ll~~~-~~~g~~~~A~~~~~ 966 (1012)
.++...-..|+.... ......| ...|.++......+
T Consensus 521 R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~ 558 (881)
T KOG0128|consen 521 RKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPE 558 (881)
T ss_pred HHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHH
Confidence 888754344432221 2222223 34566665544433
No 412
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.32 E-value=3.1e+02 Score=29.79 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=82.5
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChHHHH--------HHHHHHHccCChhHHHHHHHHHHH-cCCC
Q 001797 801 NHVTYTILIDY--HCKAGTMKDAEHLLVEMQKRVLKPNFRTYT--------SLLHGYAGIGKRSEMFALFDEMVE-RGVE 869 (1012)
Q Consensus 801 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--------~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 869 (1012)
...+|..++-. +..+.++++|.++-+.....-...|..++. -+-..|...|+...-..++...+. ..+.
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 34445444433 245577788877776654321222333333 333445567777777766666554 2233
Q ss_pred CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCc-cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCH
Q 001797 870 PDG----VIYSMMVDAYLKEGNMMKTIKLVDEMFLR--GLV-LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSH 942 (1012)
Q Consensus 870 p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 942 (1012)
-|. ...+.|+..|...+.++.|.++..+..-- ..+ .-+.....++.+-.-++++..|.+.+..+.. ..|++
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r--kapq~ 280 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR--KAPQH 280 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH--hCcch
Confidence 232 33555667778888888888877665411 000 1134455678888889999999999988887 35653
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.96 E-value=4.9e+02 Score=32.01 Aligned_cols=57 Identities=19% Similarity=0.168 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhH-----HHHHH---HHHhcCCHHHHHHHHHHHHH
Q 001797 491 YNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTY-----GAFIR---EYTKTGNMQAADRYFQEMLN 551 (1012)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-----~~l~~---~~~~~g~~~~A~~~~~~~~~ 551 (1012)
+..-+..+.....+++|..+-+.... |++... ..... -+..+|++++|.+.|..+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~----~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDS----PNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCC----CChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 66667777788888888876655433 232211 11111 24567788888888877653
No 414
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=54.38 E-value=2.6e+02 Score=28.65 Aligned_cols=94 Identities=19% Similarity=0.109 Sum_probs=43.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHh----CCCCCCHHHHHH
Q 001797 528 AFIREYTKTGNMQAADRYFQEML----NCGIAPNDIIYTTL-IDGHCKEGNVKEAFSTFRCMLG----RGILPDLKTYSV 598 (1012)
Q Consensus 528 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~ 598 (1012)
.++..+.+.|.+.+|+.+...+. +..-.++..+...+ -..|-...++.++..-+..... .-+||-...---
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 45666777777777776655443 22223332222111 1234444444444444433221 124444444444
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHh
Q 001797 599 LIHGLS--RCGKIHEALEVFSELQD 621 (1012)
Q Consensus 599 li~~~~--~~g~~~~A~~~~~~~~~ 621 (1012)
|+.+.. ...++..|..+|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 444432 33445566666655443
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.10 E-value=3.3e+02 Score=29.74 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=64.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH-ccCChhHHHHHHHHHHHc------CCCCCHHHHHHHHH
Q 001797 808 LIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYA-GIGKRSEMFALFDEMVER------GVEPDGVIYSMMVD 880 (1012)
Q Consensus 808 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~ 880 (1012)
.+..+.+.|-+..|.++.+-+......-|+......++.|+ +.++++--+++.+..... ..-|+.. ...+-
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a--~S~aL 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA--FSIAL 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH--HHHHH
Confidence 34556788899999998888876433335655555666664 667787777777765531 1123322 23334
Q ss_pred HHHhcCCh---------------HHHHHHHHHHHHcCCccCHHHHHHHHHHH
Q 001797 881 AYLKEGNM---------------MKTIKLVDEMFLRGLVLNQNVYTSLANSL 917 (1012)
Q Consensus 881 ~~~~~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 917 (1012)
++...++. ++|.+.+.+++..- +.+...|...+
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f----P~vl~~Ll~~l 234 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF----PWVLVPLLDKL 234 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHh----HHHHHHHHHHh
Confidence 45556665 78888888888762 34555555544
No 416
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=53.82 E-value=24 Score=21.12 Aligned_cols=10 Identities=30% Similarity=0.806 Sum_probs=3.6
Q ss_pred CCHHHHHHHH
Q 001797 747 GNMEKALSLF 756 (1012)
Q Consensus 747 g~~~~A~~~~ 756 (1012)
|+++.|...+
T Consensus 15 ~~~~~a~~~~ 24 (34)
T smart00028 15 GDYDEALEYY 24 (34)
T ss_pred hhHHHHHHHH
Confidence 3333333333
No 417
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.18 E-value=49 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=24.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-C-hHHHHHHHHHHHccCChhHHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQKRVLKP-N-FRTYTSLLHGYAGIGKRSEMFALF 860 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~ 860 (1012)
...+.++|+..|++.++.-..+ + ..++..|+.+|+..|++.+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655532221 1 124445556666666666655543
No 418
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.76 E-value=2.7e+02 Score=29.39 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=24.9
Q ss_pred CCHHHHHH--HHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHh-HHHHHHHHHH
Q 001797 276 PDCFTYSL--MVDGFCKNKRLEDAKLLLKKMYD-----LKLNPNEV-VYTTLINGFM 324 (1012)
Q Consensus 276 p~~~~~~~--li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~li~~~~ 324 (1012)
|+.+.|.. ++..+...|+..++++.+++..+ .+++|++. .|+.+..-|.
T Consensus 111 ~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYy 167 (380)
T KOG2908|consen 111 PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYY 167 (380)
T ss_pred chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHH
Confidence 45554433 23444456666666666666655 45555442 3444444443
No 419
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.30 E-value=4.6e+02 Score=30.93 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCh---hHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCChHHHHHHHHHHH
Q 001797 195 NSILNDLLRANKL---KLFWKVYDVMLEAKVTPDVYTYTSLINA---HFRAGNVKAAQRVLFEME 253 (1012)
Q Consensus 195 ~~ll~~l~~~~~~---~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~ 253 (1012)
...++-+-+.++. ++--..+.+|+.+--.|++-+-.++++. |....+++.-.++.+.+.
T Consensus 164 EkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk 228 (1226)
T KOG4279|consen 164 EKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLK 228 (1226)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence 3344444444332 3344566777765455665544444444 444555555555555443
No 420
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.18 E-value=2.4e+02 Score=28.30 Aligned_cols=55 Identities=9% Similarity=0.046 Sum_probs=34.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 001797 741 DGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 741 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
+++...|++-++++....++...|.+..+|..-+.+....=+..+|..-|..+++
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3344556666666666666666666666666666666666666666666666655
No 421
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=51.94 E-value=2.9e+02 Score=28.60 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 001797 593 LKTYSVLIHGLSRCGKIHEAL 613 (1012)
Q Consensus 593 ~~~~~~li~~~~~~g~~~~A~ 613 (1012)
..+|.-|+.+++.+|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 445677777777777766543
No 422
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=50.79 E-value=1.8e+02 Score=29.84 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=42.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC-chhhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----
Q 001797 740 VDGCCRDGNMEKALSLFLEMVQKGLA-STSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHC----- 813 (1012)
Q Consensus 740 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----- 813 (1012)
|+++...+++.++....-+..+..-+ ++.+...=+-.|.+.|....+.++-..-+...-+-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 55666666666666554444332211 224444445556666666666555555554322222233444444443
Q ss_pred hcCCHHHHHHHH
Q 001797 814 KAGTMKDAEHLL 825 (1012)
Q Consensus 814 ~~g~~~~A~~~~ 825 (1012)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 245666665554
No 423
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.25 E-value=75 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=8.6
Q ss_pred HHHHHhcCcHHHHHHHHHHHHh
Q 001797 774 LNGLCKSQKIFEANKLLEDMAD 795 (1012)
Q Consensus 774 ~~~~~~~g~~~~A~~~~~~~~~ 795 (1012)
+-++.+.|++++|.+..+.+++
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 424
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=49.86 E-value=2e+02 Score=30.24 Aligned_cols=52 Identities=25% Similarity=0.461 Sum_probs=22.5
Q ss_pred ccCChhHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 001797 849 GIGKRSEMFALFDEMVER---GVEPDGVIYS--MMVDAYLKEGNMMKTIKLVDEMFL 900 (1012)
Q Consensus 849 ~~g~~~~A~~~~~~~~~~---~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 900 (1012)
..++.++|.++++++.+. .-.|++..|. ..+.++...|+..++.+.+....+
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 334555555555555431 1223333322 222444444555555555444444
No 425
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=49.26 E-value=3.1e+02 Score=28.14 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHHH----cCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCccC-HHH
Q 001797 836 NFRTYTSLLHGYAGIGKRSEMFALFDEMVE----RGVEPDGVI-YSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLN-QNV 909 (1012)
Q Consensus 836 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~ 909 (1012)
-..++..++.-|++.++.+.+.++..+..+ .|.+-|... -..|+-.|....-.++-++..+.+.++|..-+ ..-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 355777888899999999888887766554 455555432 22344555555567888888889999874322 122
Q ss_pred HHHH-HHHHhccccHHHHHHHHHHHhh
Q 001797 910 YTSL-ANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 910 ~~~l-~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
|... +--+....++.+|-.++...+.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 2222 2234456788888888877654
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=49.19 E-value=1.9e+02 Score=25.73 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHhccccHHHHHHHHHH
Q 001797 890 KTIKLVDEMFLRGLV-LNQNVYTSLANSLCKEEEFYKVLKLLDE 932 (1012)
Q Consensus 890 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 932 (1012)
++.++|+.|..+++. .-+..|...+..+...|++++|.+++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 666666666665543 2345555566666666666666665554
No 427
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.61 E-value=5.3e+02 Score=30.54 Aligned_cols=255 Identities=15% Similarity=0.072 Sum_probs=125.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 001797 568 HCKEGNVKEAFSTFRCMLGRGILPDLKTY----SVLIHGLSRCGKIHEALEVFSELQDKGLVPDVITYSSLISGFCKQGF 643 (1012)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 643 (1012)
....|+..+|.+++.-.+-..-.+. ..| ..+.-++...|......+++.+.++..-.+.+..=..|.-++...|.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~~-s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGEG-SGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCCC-CCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 4456777788887776553311111 111 12233444555555577777666654332222222233334444442
Q ss_pred HHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHH--HHHHHHHcCCHHHHH
Q 001797 644 IKEAFQLHEKMCESGITPNIVTY--NALIDGLCKSGELERARELFDGIFAKGLT-PTVVTYTT--IIDGYCKSGNLTEAF 718 (1012)
Q Consensus 644 ~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~--li~~~~~~g~~~~A~ 718 (1012)
.-.++|+.+.+.-...+.++- ..+..+++-.|... .+.+++|...... .-..+... +.-++..-|+-++|-
T Consensus 446 --a~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~--~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad 521 (929)
T KOG2062|consen 446 --ANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN--QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDAD 521 (929)
T ss_pred --ccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc--HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhH
Confidence 223455555443222222221 22333344444322 1222333321000 00011111 122345567777888
Q ss_pred HHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHHHHHHHHHHHHhC
Q 001797 719 QLVNEMPSRGVTPDNF--VYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADK 796 (1012)
Q Consensus 719 ~l~~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 796 (1012)
.+.++|.... .|-.. -..+++.+|+-.|+......++.-++....++..-+..++-++.-..+.+....+.+-+.+.
T Consensus 522 ~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses 600 (929)
T KOG2062|consen 522 PLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES 600 (929)
T ss_pred HHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhh
Confidence 8888887642 22211 23455667888888777777777666554444455555555666667777777777666553
Q ss_pred CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 797 HITPNHVTY--TILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 797 ~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
..|-...= ..|.-+|+-.| ..+|+.+++-|..
T Consensus 601 -~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 601 -YNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS 634 (929)
T ss_pred -cChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc
Confidence 44433322 23333344444 4678888888874
No 428
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.12 E-value=54 Score=27.39 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=33.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCc---cC-----HHHHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLV---LN-----QNVYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~---~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
.+.|++.+|.+.+.+..+.... .. ..+...++......|++++|.+.++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777776666555543211 11 23445567778888888888888888765
No 429
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.00 E-value=3.3e+02 Score=28.01 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhh----hCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001797 699 VTYTTIIDGYCKSGNLTEAFQLVNEMP----SRGVTPDNFVY-CTLVDGCCRDGNMEKALSLFLEMVQKGLA 765 (1012)
Q Consensus 699 ~~~~~li~~~~~~g~~~~A~~l~~~~~----~~~~~pd~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 765 (1012)
.++..+..-|++.++.+.+.+...+.. ..|.+.|.... ..+.-.|....-.++-++..+.++++|.+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 445555556666666666555544432 22444443311 11112222222244455555555555544
No 430
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.89 E-value=3.7e+02 Score=33.49 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 805 YTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 805 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
|...+..+-+.+..+.+.++...+++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe 1011 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE 1011 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444455555555555555555544
No 431
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=47.38 E-value=46 Score=20.49 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHHcCCCchhhHHHH
Q 001797 748 NMEKALSLFLEMVQKGLASTSSFNAL 773 (1012)
Q Consensus 748 ~~~~A~~~~~~~~~~~~~~~~~~~~l 773 (1012)
+.+.|..+|++++...|.....|...
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 44555556666555555444444443
No 432
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.26 E-value=1.7e+02 Score=33.65 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
.+.-+|....+.+.|.++++++-+.. |.++.....+..+....|+-++|+.......
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33344444444444544444444433 2333333334444444444444444444443
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=47.06 E-value=60 Score=31.67 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=23.9
Q ss_pred cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCC
Q 001797 905 LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLS 941 (1012)
Q Consensus 905 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 941 (1012)
|++.+|..++.++...|+.++|..+..++.. +.|.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP~ 176 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR--LYPA 176 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCc
Confidence 5667777777777777777777777777665 5563
No 434
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.85 E-value=1.7e+02 Score=29.97 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQK--RVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDA--- 881 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~--- 881 (1012)
.=|.+++..+++.+++...-+..+ ..++|...-...+ .|.+.|....+.++-...+...-+-+...|..++..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 346788899999999987765543 2244444433333 478999999999998888863222233446665544
Q ss_pred --HHhcCChHHHHHHH
Q 001797 882 --YLKEGNMMKTIKLV 895 (1012)
Q Consensus 882 --~~~~g~~~~A~~~~ 895 (1012)
+.=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 45579999999888
No 435
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.58 E-value=1.9e+02 Score=31.75 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=25.6
Q ss_pred HhcCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 001797 778 CKSQKIFEANKLLEDMADKHITPNHV--TYTILIDYH--CKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 778 ~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 830 (1012)
...+++..|.++++.+.+. ++++.. .+..+..+| +..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455555555555555554 333332 233333333 345566666666665543
No 436
>PRK12798 chemotaxis protein; Reviewed
Probab=45.57 E-value=4.5e+02 Score=28.89 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=87.7
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCch---hhHHHHHHHHHhcCcHHHH
Q 001797 711 SGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC-CRDGNMEKALSLFLEMVQKGLAST---SSFNALLNGLCKSQKIFEA 786 (1012)
Q Consensus 711 ~g~~~~A~~l~~~~~~~~~~pd~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A 786 (1012)
.|+.++|.+.+..+.....++....+..|+.+- ....+..+|+++|+.+.-.-|-.. .+...-+....+.|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 789999999999887776777777788887764 455688899999988876655433 4445555556677777776
Q ss_pred HHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHccCChhHHHHHHH
Q 001797 787 NKLLEDMADKHITPNHVT---YTILIDYHCKAGTMKDAEHLLVEMQKRVLKPN--FRTYTSLLHGYAGIGKRSEMFALFD 861 (1012)
Q Consensus 787 ~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 861 (1012)
..+-..-..+ +..++.. +..+...+.+.++-..- ..+..++.. +.|+ ...|..+.+.-.-.|+.+-|...-+
T Consensus 205 ~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 205 EALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6554444433 2222221 12222223222211111 123333332 2332 2356666666666677776666666
Q ss_pred HHHH
Q 001797 862 EMVE 865 (1012)
Q Consensus 862 ~~~~ 865 (1012)
++..
T Consensus 282 ~A~~ 285 (421)
T PRK12798 282 RALK 285 (421)
T ss_pred HHHH
Confidence 6655
No 437
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=45.36 E-value=1.1e+02 Score=25.61 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=15.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.++......|++++|...+++++..
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445556667777777777666654
No 438
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.56 E-value=4.5e+02 Score=28.63 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 001797 156 VVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGS--VPGLLCCNSILNDLLRANKLKLFWKVYDVMLEA 220 (1012)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~~ 220 (1012)
....-++.-|..+|+++.|+..+-++ ++.-. .-.+..|-.++..-.-.|+|.....+-.+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~-RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRA-RDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhh-hhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 56778999999999999999999886 43211 112445555666666678887777776666543
No 439
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.20 E-value=2.1e+02 Score=27.30 Aligned_cols=72 Identities=14% Similarity=0.008 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 001797 120 GAASGVIDRMIATRRSSYQILESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILN 199 (1012)
Q Consensus 120 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~ 199 (1012)
+.|..+++.+-+..+.+..++..+.+.+ --..+-.|.+.|.+++|.++|++... .|+.......|.
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~li----------k~~aV~VCm~~g~Fk~A~eiLkr~~~----d~~~~~~r~kL~ 151 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLI----------KEQAVAVCMENGEFKKAEEVLKRLFS----DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHH----------HHHHHHHHHhcCchHHHHHHHHHHhc----CCCchhHHHHHH
Confidence 3466666666555555555555544433 23356678999999999999998722 355444444454
Q ss_pred HHHhcC
Q 001797 200 DLLRAN 205 (1012)
Q Consensus 200 ~l~~~~ 205 (1012)
.+.+..
T Consensus 152 ~II~~K 157 (200)
T cd00280 152 MIIREK 157 (200)
T ss_pred HHHHcc
Confidence 454443
No 440
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=44.00 E-value=2.1e+02 Score=24.55 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=13.3
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFG 343 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (1012)
.||...|-.|..+ +.|--+++...+.++...|
T Consensus 68 ~pdL~p~~AL~a~--klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 68 YPDLEPWAALCAW--KLGLASALESRLTRLASSG 99 (116)
T ss_dssp -GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT-S
T ss_pred CccHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 4555544443322 4455555555555444433
No 441
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.41 E-value=2.1e+02 Score=24.49 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=14.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001797 799 TPNHVTYTILIDYHCKAGTMKDAEHLLVEMQK 830 (1012)
Q Consensus 799 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 830 (1012)
.||...|..|. -.+.|..+++...+.++..
T Consensus 68 ~pdL~p~~AL~--a~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 68 YPDLEPWAALC--AWKLGLASALESRLTRLAS 97 (116)
T ss_dssp -GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT
T ss_pred CccHHHHHHHH--HHhhccHHHHHHHHHHHHh
Confidence 45555544442 2455555555555555543
No 442
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.41 E-value=7e+02 Score=30.25 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=40.5
Q ss_pred HHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001797 164 GYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLE 219 (1012)
Q Consensus 164 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~ 219 (1012)
....+|+++.|++.-.+. .+..+|..|+....++|+.+.|...|++...
T Consensus 652 LaLe~gnle~ale~akkl-------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKL-------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred eehhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345688999998877665 5678899999999999999999999987765
No 443
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=42.28 E-value=55 Score=21.57 Aligned_cols=20 Identities=10% Similarity=0.301 Sum_probs=9.6
Q ss_pred HHHHHHHHhccccHHHHHHH
Q 001797 910 YTSLANSLCKEEEFYKVLKL 929 (1012)
Q Consensus 910 ~~~l~~~~~~~g~~~~A~~~ 929 (1012)
+..++-.+..+|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 33444455555555555555
No 444
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.76 E-value=84 Score=30.61 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=50.4
Q ss_pred ccCChhHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhcC
Q 001797 79 HVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRR 134 (1012)
Q Consensus 79 ~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~ 134 (1012)
...||.....+-.|+.+--.+.|++..|..++..+...|+.++|...+.++..-.|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56889999999999988777889999999999999999999999999999887666
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.67 E-value=5.2e+02 Score=28.53 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--C----CCCC-ChHHHHHHHHHHHccCChhHHHHHHHHHH
Q 001797 805 YTILIDYHCKAGTMKDAEHLLVEMQK--R----VLKP-NFRTYTSLLHGYAGIGKRSEMFALFDEMV 864 (1012)
Q Consensus 805 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 864 (1012)
...|++.++-.|++..|++.++.+.- . .+++ ...++-.++-+|...+++.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555666666666666544311 0 1122 22345556666666777777777776665
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.56 E-value=68 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 347 NLFTYNALIGGICKAGEIEKAKGLMTEML 375 (1012)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (1012)
|-.---.+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444445556666666666666555554
No 447
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.51 E-value=76 Score=32.52 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=36.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHH
Q 001797 883 LKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHAT 944 (1012)
Q Consensus 883 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 944 (1012)
.+.|+.++|..+|+.++... |.++.+...++...-.++++-+|-..|-+++. +.|.+..
T Consensus 127 ~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP~nse 185 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALT--ISPGNSE 185 (472)
T ss_pred HhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCCCchH
Confidence 35566666666666666665 55566666666666666666666666666655 5555443
No 448
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=41.44 E-value=5.3e+02 Score=28.57 Aligned_cols=122 Identities=14% Similarity=0.107 Sum_probs=63.6
Q ss_pred HHhCCCHHHHHHHHHH-HHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 001797 498 LCKAKKMEDARSCLVE-MTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKE 576 (1012)
Q Consensus 498 ~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 576 (1012)
-...|+.-.|-+-+.. +....-.|+.+...+ ..+...|+++.+.+.+...... +.....+...++....+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 3445666655444333 333333344433332 3345567777777666655432 22334455566666666667777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 001797 577 AFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSELQDKG 623 (1012)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 623 (1012)
|...-+.|+...+. ++.....-....-..|-++++.-.++++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77666666655443 33333333333334455666666666665543
No 449
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.82 E-value=4.1e+02 Score=26.46 Aligned_cols=101 Identities=8% Similarity=0.113 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCHH
Q 001797 799 TPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKP---NFRTYT--SLLHGYAGIGKRSEMFALFDEMVERGVEPDGV 873 (1012)
Q Consensus 799 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 873 (1012)
.+...-++.|+--|.-...+.+|.+.|.+-. |+.| |..++. .-+......|+.++|++..++..-.-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 3334444555444443334444444443322 3333 222332 34556677788888877777654322333433
Q ss_pred HHHHHH----HHHHhcCChHHHHHHHHHHHHc
Q 001797 874 IYSMMV----DAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 874 ~~~~l~----~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
.+..|. --+.+.|..++|+++.+.-+..
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~ 132 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAP 132 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccc
Confidence 333332 2245677788888877665544
No 450
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=38.79 E-value=74 Score=24.10 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 001797 388 SLIEGCYRENNMAKAYELLVDMK 410 (1012)
Q Consensus 388 ~li~~~~~~g~~~~A~~~~~~m~ 410 (1012)
.+|.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555555443
No 451
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.67 E-value=5.4e+02 Score=27.58 Aligned_cols=16 Identities=19% Similarity=-0.054 Sum_probs=11.0
Q ss_pred hcCCHHHHHHHHHHHH
Q 001797 814 KAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~ 829 (1012)
...+++.|+.++....
T Consensus 195 glk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 195 GLKRFERALYLLEICV 210 (422)
T ss_pred ccccHHHHHHHHHHHH
Confidence 4557777777777666
No 452
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.18 E-value=5.3e+02 Score=27.32 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHc------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 001797 815 AGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAG------IGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNM 888 (1012)
Q Consensus 815 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 888 (1012)
.+.++++..++.+....+. |-+......+.++.. .-++.....+|+-... +.|++.+-.+-.-+..+..-.
T Consensus 269 r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 269 RALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHHHHHHhhhH
Confidence 3456777778877776643 666666555544432 2356666666666654 455544333333334444446
Q ss_pred HHHHHHHHHHHHcCCccC-HHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 001797 889 MKTIKLVDEMFLRGLVLN-QNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILI 949 (1012)
Q Consensus 889 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll 949 (1012)
+.++.+.+-+...+--.. ...+..-+..+.+.|+.++|...|++++. +.++.....++.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~aer~~l~ 405 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNAAERAFLR 405 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCChHHHHHHH
Confidence 677777777766631112 22344456677788888888888888876 566655555444
No 453
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=36.81 E-value=3.8e+02 Score=29.30 Aligned_cols=20 Identities=5% Similarity=-0.170 Sum_probs=9.8
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 001797 324 MKQGNLQEAFRLKNEMVTFG 343 (1012)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g 343 (1012)
.+.+++..|.++|+++.+..
T Consensus 141 ~n~~dy~aA~~~~~~L~~r~ 160 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRRL 160 (380)
T ss_pred HHhcChHHHHHHHHHHHhcc
Confidence 34445555555555555443
No 454
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.76 E-value=1.2e+02 Score=22.94 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=28.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHH-----HHhcCChhHHHHH
Q 001797 288 FCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLING-----FMKQGNLQEAFRL 335 (1012)
Q Consensus 288 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~ 335 (1012)
+...|++-+|-++++.+-.....+....+..+|.. ..+.|+.+.|.++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 44678888888888888754333444555555544 2355666666554
No 455
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.96 E-value=4.9e+02 Score=26.57 Aligned_cols=118 Identities=11% Similarity=-0.042 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcCcHH-HHHH
Q 001797 712 GNLTEAFQLVNEMPSRGVTP-DNFVYCTLVDGCCRD-GNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIF-EANK 788 (1012)
Q Consensus 712 g~~~~A~~l~~~~~~~~~~p-d~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~ 788 (1012)
..-..|+++-++.+.. .| +..+|..--..+... .+..+-++.+.++++.+|++..+|.---......|+.. .-++
T Consensus 57 E~S~RAl~LT~d~i~l--NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRL--NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccCHHHHHHHHHHHHh--CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 3445667777776653 33 333333322222221 24666677778888888877766655444445555555 5566
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 001797 789 LLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRV 832 (1012)
Q Consensus 789 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 832 (1012)
+.+.|+.. -..+-.+|..--.++..-+.++.-+.+..++++..
T Consensus 135 f~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 135 FTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred HHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 77777663 23455566655556666667777777777777653
No 456
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=35.78 E-value=5.1e+02 Score=26.66 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=20.2
Q ss_pred hHHHHHHHhhcccCChhHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 001797 68 PDVVQSVLQHSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMM 112 (1012)
Q Consensus 68 ~~~~~~~l~~~~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l~~~ 112 (1012)
|.++...|++ ++...|+.+.+.....+.| ..+...++|.
T Consensus 86 ~~iL~~lL~~---~~~~~a~~i~~~y~~l~~F---~~~LE~LLh~ 124 (258)
T PF07064_consen 86 HHILRHLLRR---NLDEEALEIASKYRSLPYF---SHALELLLHT 124 (258)
T ss_pred HHHHHHHHhc---CCcHHHHHHHHHhccCCCc---HHHHHHHHHH
Confidence 3444444443 3455677766666555555 4444445543
No 457
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=35.71 E-value=3e+02 Score=27.35 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=55.1
Q ss_pred CCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCccCH
Q 001797 833 LKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEP---DGVIYS--MMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQ 907 (1012)
Q Consensus 833 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 907 (1012)
..+...-++.|+--|.-...+.+|.+.|..-. |+.| |..++. ..+......|+.++|++....+-..-+..|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 44555556666655555555555555554433 4444 333333 3445667788888888887776544333344
Q ss_pred HHHHHHH----HHHhccccHHHHHHHHHHH
Q 001797 908 NVYTSLA----NSLCKEEEFYKVLKLLDEM 933 (1012)
Q Consensus 908 ~~~~~l~----~~~~~~g~~~~A~~~~~~~ 933 (1012)
..+..|- --+.+.|..++|++..+.=
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333332 2255667777777776654
No 458
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.04 E-value=5e+02 Score=26.43 Aligned_cols=22 Identities=14% Similarity=-0.003 Sum_probs=17.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHh
Q 001797 160 MLIDGYRKIGFLDDAAIVFFGV 181 (1012)
Q Consensus 160 ~l~~~~~~~g~~~~A~~~f~~~ 181 (1012)
-+++.|...|...+|+.-|..-
T Consensus 15 ki~rl~l~~~~~~~Av~q~~~H 36 (247)
T PF11817_consen 15 KICRLYLWLNQPTEAVRQFRAH 36 (247)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3568888999999999888765
No 459
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=34.73 E-value=2.3e+02 Score=25.05 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=35.7
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 001797 718 FQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLA 765 (1012)
Q Consensus 718 ~~l~~~~~~~~~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 765 (1012)
.+-++.+..-.+.|+..+...-+.+|.+.+++..|..+|+-+..+...
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 344455555567888888888888888888888888888877665433
No 460
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.46 E-value=4e+02 Score=25.51 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=17.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 001797 284 MVDGFCKNKRLEDAKLLLKKMYD 306 (1012)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~~~~ 306 (1012)
.+..|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34567788888888888888776
No 461
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=33.98 E-value=1.1e+03 Score=29.83 Aligned_cols=249 Identities=12% Similarity=0.040 Sum_probs=148.0
Q ss_pred CCCHhHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 001797 310 NPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSL 389 (1012)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 389 (1012)
.+|..+-...+..+.+.+. .++...+..+... +|...-...+.++.+.+........+..++. .+|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCCHHHHHHH
Confidence 5677777777777777765 4466666666643 3544444555556555432222334444444 2566666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 001797 390 IEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLRQNRF 469 (1012)
Q Consensus 390 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 469 (1012)
+..+...+..+ .. .+-++.+ .+|...-...+.++.+.+..+. +..+.. .++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 66665543211 12 2333333 4566666777777776655432 223333 45666666777777776654
Q ss_pred HH-HHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 470 EE-AINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQAADRYFQE 548 (1012)
Q Consensus 470 ~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 548 (1012)
+. +...+..+.+ .+|...-...+.++.+.|....+...+..+.+. ++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43 3455556554 357778888888888888766554555555543 355555556677777665 456666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 001797 549 MLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR 587 (1012)
Q Consensus 549 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 587 (1012)
+++ .++..+-...+.++.+......+...+..+.+.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 665 577777777778887764455677777777664
No 462
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.90 E-value=4.4e+02 Score=25.46 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 001797 208 KLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEE 254 (1012)
Q Consensus 208 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 254 (1012)
+++.++-+++.. ++...-.....|++++|..-++++.+
T Consensus 20 EE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~ 57 (204)
T COG2178 20 EEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASE 57 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455555555543 33344445567889999888887654
No 463
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.36 E-value=1.9e+02 Score=24.27 Aligned_cols=51 Identities=4% Similarity=-0.016 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCccCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHH
Q 001797 893 KLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATC 945 (1012)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 945 (1012)
+.++++..++.+..+-....|+-.|...|+.+.|.+.|+.=.. +-|++..+
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~f 108 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVF 108 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhH
Confidence 3444455554444444555566666666666666666655433 45555444
No 464
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.76 E-value=2.5e+02 Score=24.96 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=16.9
Q ss_pred HHHHHHHHHcCCCch--hhHHHHHHHHHhcCcHHHHHHHH
Q 001797 753 LSLFLEMVQKGLAST--SSFNALLNGLCKSQKIFEANKLL 790 (1012)
Q Consensus 753 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~ 790 (1012)
.++|..|..++.-.. .-|...+..+...|++.+|.++|
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444433222 33344444444455555554444
No 465
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.42 E-value=7e+02 Score=27.30 Aligned_cols=20 Identities=20% Similarity=-0.002 Sum_probs=10.7
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 001797 812 HCKAGTMKDAEHLLVEMQKR 831 (1012)
Q Consensus 812 ~~~~g~~~~A~~~~~~~~~~ 831 (1012)
+.+.+++..|.++|.++...
T Consensus 140 l~n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRR 159 (380)
T ss_pred HHHhcChHHHHHHHHHHHhc
Confidence 34455555555555555544
No 466
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.28 E-value=6.2e+02 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=13.6
Q ss_pred CCHhHHHHHHHHHHhcCChhHHHH
Q 001797 311 PNEVVYTTLINGFMKQGNLQEAFR 334 (1012)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~ 334 (1012)
-|+..|..+..+|.-.|+...+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 455556666666666665555443
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.73 E-value=5e+02 Score=31.36 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 001797 714 LTEAFQLVNEMPSRGVTPDNF--VYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST 767 (1012)
Q Consensus 714 ~~~A~~l~~~~~~~~~~pd~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 767 (1012)
.+.+.++-.-.....+.|-.. +....++.+.+.+++..|..+-.++++.+|.++
T Consensus 1063 ~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~ 1118 (1202)
T KOG0292|consen 1063 LEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPP 1118 (1202)
T ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCh
Confidence 344433333333333444333 344455666677777777777777766666555
No 468
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.49 E-value=3e+02 Score=22.66 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCHH
Q 001797 501 AKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNMQ 540 (1012)
Q Consensus 501 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 540 (1012)
.|+.+.|.+++..+. .| +..|..++.++...|.-.
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 345555555555544 32 223444444444444433
No 469
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.48 E-value=47 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.473 Sum_probs=21.2
Q ss_pred hcChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 001797 256 VGAIDEAFELKESMIHKGLVPDCFTYSLMVDG 287 (1012)
Q Consensus 256 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~ 287 (1012)
.|.-.+|..+|+.|++.|-.||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34556778888888888888875 6666543
No 470
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=31.31 E-value=3.4e+02 Score=24.06 Aligned_cols=51 Identities=20% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhhcChHH
Q 001797 211 WKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDE 261 (1012)
Q Consensus 211 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~ 261 (1012)
.+..+....-++.|+...-..-++++.+-.++..|.++|+-+..+.|.-++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 445555666778889888899999999999999999999988877665554
No 471
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.68 E-value=51 Score=29.34 Aligned_cols=30 Identities=37% Similarity=0.635 Sum_probs=17.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 001797 570 KEGNVKEAFSTFRCMLGRGILPDLKTYSVLIH 601 (1012)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 601 (1012)
+.|.-.+|..+|++|++.|.+||. |+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 345555666666666666666654 555443
No 472
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.48 E-value=1.2e+03 Score=29.47 Aligned_cols=177 Identities=11% Similarity=0.071 Sum_probs=105.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHH
Q 001797 807 ILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDG-----VIYSMMVDA 881 (1012)
Q Consensus 807 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~ 881 (1012)
.+..+|...|+..+|+..|.++... +..+. ....++.-..-.+ --+..|-.|.. .-|...+..
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg-~ge~~-aL~~lv~~~~p~~----------~sv~dG~t~s~e~t~lhYYlkv~rl 992 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSG-FGEGN-ALRKLVYFLLPKR----------FSVADGKTPSEELTALHYYLKVVRL 992 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhc-cccHH-HHHHHHHHhcCCC----------CchhcCCCCCchHHHHHHHHHHHHH
Confidence 3444577788888888888877652 22221 1212211110000 00112333321 124455677
Q ss_pred HHhcCChHHHHHHHHHHHHcCCc---cCHHHHHHHHHHHhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHH----HHh
Q 001797 882 YLKEGNMMKTIKLVDEMFLRGLV---LNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCILISS----VYE 954 (1012)
Q Consensus 882 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ll~~----~~~ 954 (1012)
+-+.+-.+++.++...+++.--+ .-+.++..+.+-....|.+-+|.+++-. .|+...-...++. +++
T Consensus 993 le~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLRqlvivLfe 1066 (1480)
T KOG4521|consen 993 LEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLRQLVIVLFE 1066 (1480)
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHh
Confidence 78888888888888888876312 1245566777778888888888776642 4666665555554 678
Q ss_pred cCCHHHHHHHHHHHHHCCCccChhHHHHhhhhhhcccccccccccHHHHHHhcc
Q 001797 955 AGNIDKATRFLESMIKFGWVADSTVMMDLVKQDQNDANSENTSNSWKEAAAIGI 1008 (1012)
Q Consensus 955 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1008 (1012)
+|.++. +....++.-...+-+++-...-.+......|-+++--||-+
T Consensus 1067 cg~l~~-------L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~ 1113 (1480)
T KOG4521|consen 1067 CGELEA-------LATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHV 1113 (1480)
T ss_pred ccchHH-------HhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHH
Confidence 888754 33366777777777766666666666667777777666644
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.14 E-value=4e+02 Score=23.75 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 001797 925 KVLKLLDEMGDKEIKLSHATCCILISS-VYEAGNIDKATRFLES 967 (1012)
Q Consensus 925 ~A~~~~~~~~~~g~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~ 967 (1012)
++.++|..|..+|+--..+.++...+. +...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777777777776666666666 5566777777777765
No 474
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.10 E-value=3.5e+02 Score=31.29 Aligned_cols=95 Identities=11% Similarity=0.111 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH------HHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CHHHHH
Q 001797 804 TYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFR------TYTSLLHGYAGIGKRSEMFALFDEMVERGVEP-DGVIYS 876 (1012)
Q Consensus 804 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~ 876 (1012)
.|+...+ ..+..++..+.+.|..-... ++.|.. ....|.-+|....+.|.|.++++++.+ .+| ++.+-.
T Consensus 357 LWn~A~~-~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~ 432 (872)
T KOG4814|consen 357 LWNTAKK-LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQL 432 (872)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHH
Confidence 4555444 34677888898888765543 333322 345666778888999999999999986 555 444445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLRG 902 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 902 (1012)
.+..+....|+-++|+.........-
T Consensus 433 ~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 433 LMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 55677888999999999998887763
No 475
>cd08308 Death_Tube Death domain of Tube. Death domains (DDs) similar to the DD in the protein Tube from Drosophila melanogaster. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and also in mediating innate immune response to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Some members of this subfamily contain a C-terminal kinase domain, like Pelle, in addition to the DD. Tube has no counterpart in vertebrates. It contains an N-terminal DD and a C-terminal region with five copies of the Tube repeat, an 8-amino acid motif. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (D
Probab=29.85 E-value=3.3e+02 Score=24.20 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcc-CCchhhhhc-c------cccCCCChHHHHHHHhhcc--cCChhHHHHHHHhhhcCCCCCCCHHHHH
Q 001797 38 EEAAKEITNFLNE-NHWESLIES-S------KLRNKLNPDVVQSVLQHSH--VNDPKRLLGFFNWTSTQLGIPPNLHSFS 107 (1012)
Q Consensus 38 ~~~~~~~~~~l~~-~~~~~~~~~-~------~~~~~l~~~~~~~~l~~~~--~~~~~~al~ff~~~~~~~~~~~~~~~~~ 107 (1012)
.....+++.+|.. ..|+++... + ......|+.++..+=...+ ...| +..=+..| .+...-+|++ .
T Consensus 9 ~~~~~~L~~iLD~~d~Wk~L~~~Ip~~~~~~~~~~~Y~~~hv~~ie~~~~~~grSp-te~LL~eW-GT~g~~r~Tv---~ 83 (125)
T cd08308 9 PADLYRLVNILDINDGWKKLMAIIPSDDDDFNNLAKYNAEHFKLIEQAANKQRRSC-SEILLDEW-GTSGKVRPTL---G 83 (125)
T ss_pred HHHHHHHHHHcCccccHHHHHHhcCCcccccccccccCHHHHHHHHHHHHhcCCCh-HHHHHHHH-hhcCCCCCcH---H
Confidence 3456779999985 559998852 0 1224566788777643321 2233 34456678 3333234444 4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhcC
Q 001797 108 YLAMMLCNSRLFGAASGVIDRMIATRR 134 (1012)
Q Consensus 108 ~l~~~l~~~~~~~~a~~~l~~~~~~~~ 134 (1012)
.|+.+|.+.+.|..|.-+.-.++...+
T Consensus 84 ~L~~LL~k~~L~~Aa~~la~d~l~~~~ 110 (125)
T cd08308 84 VLLQLLVKAELFRAADYVAVDILKEEP 110 (125)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 466778899999999988888776443
No 476
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=29.75 E-value=6e+02 Score=29.15 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=49.8
Q ss_pred CCChHHHHHHHh-hcccCChhHHHHHHHhhhcCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHhcC
Q 001797 65 KLNPDVVQSVLQ-HSHVNDPKRLLGFFNWTSTQLGIPPNLHSFSYLAMMLCNSRLFGAASGVIDRMIATRR 134 (1012)
Q Consensus 65 ~l~~~~~~~~l~-~~~~~~~~~al~ff~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~ 134 (1012)
++.+..+++..+ .....+++.-..++..+..+.+..++..+...+++ ...|..++|.++|++++..+.
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~ 229 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGE 229 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccC
Confidence 344555554432 12347888899999999888898888888877654 457888999999999987553
No 477
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=29.73 E-value=6.6e+02 Score=26.16 Aligned_cols=62 Identities=6% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 001797 556 PNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGR-GILPDLKTYSVLIHGLSRCGKIHEALEVFS 617 (1012)
Q Consensus 556 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 617 (1012)
++..+...++..++..+++.+-.++++..... +...|...|..+|......|+..-..++..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 33444444444555555555555544444333 333344445555555555555444444443
No 478
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=29.73 E-value=96 Score=24.91 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHHH
Q 001797 956 GNIDKATRFLESMIK 970 (1012)
Q Consensus 956 g~~~~A~~~~~~~~~ 970 (1012)
-.|++|.++-++|.+
T Consensus 53 ~~w~~ar~~~~Km~~ 67 (79)
T cd02679 53 SQWERARRLQQKMKT 67 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566665555554
No 479
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.72 E-value=1.5e+02 Score=23.55 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=9.7
Q ss_pred ccccHHHHHHHHHHHhh
Q 001797 919 KEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 919 ~~g~~~~A~~~~~~~~~ 935 (1012)
..|++++|+++|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 44566666666655543
No 480
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=29.69 E-value=5.3e+02 Score=24.99 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=12.8
Q ss_pred HhccccHHHHHHHHHHHhh
Q 001797 917 LCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 917 ~~~~g~~~~A~~~~~~~~~ 935 (1012)
..+.|++++|...++-|..
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4466777777777766653
No 481
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.10 E-value=1.1e+02 Score=30.14 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTPD-NFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLAST 767 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~pd-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 767 (1012)
..+.++.+.|.+++.+... ..|+ ...|..+...-.+.|+++.|.+.|++.++.+|++.
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456677777777777765 3343 33666666666677777777777777777776655
No 482
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.65 E-value=8.1e+02 Score=26.82 Aligned_cols=151 Identities=15% Similarity=0.217 Sum_probs=77.4
Q ss_pred chhhhhcccccCCCChHHHHHHHhhcccCChhHHHHHHHhhhcC-----CC-----------C-CC---CHHHHHHHHHH
Q 001797 53 WESLIESSKLRNKLNPDVVQSVLQHSHVNDPKRLLGFFNWTSTQ-----LG-----------I-PP---NLHSFSYLAMM 112 (1012)
Q Consensus 53 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~al~ff~~~~~~-----~~-----------~-~~---~~~~~~~l~~~ 112 (1012)
|..+-..+.+...++..++..++....+.+...-..+.+++... |. + .| ...+|..++..
T Consensus 54 ~R~lr~l~~~r~kln~~vL~~~v~~~~~~~se~~~~~l~fv~~~~~~~~p~~~~s~~t~~a~~~k~~~~Ei~aY~~lLv~ 133 (493)
T KOG2581|consen 54 LRALRLLPSTRRKLNGAVLYKLVSSLLSSGSEAMDRLLRFVPAFDKNIKPLDTDSPNTQSALKRKPLPAEIEAYLYLLVL 133 (493)
T ss_pred HHHHHhhhhhHhhhhHHHHHHHHHHHcCCchHHHHHHHhhcccccccCCcccccccccccccccCCchHHHHHHHHHHHH
Confidence 44444445555667777777777653333322222222232111 10 0 11 24667776665
Q ss_pred HHh--cCChhhHHHHHHHHHHh----cCChHHHHHHHHHHhhhcCCCchHHHHHHHHHHHhcCChhHHHHHHHHhhhhCC
Q 001797 113 LCN--SRLFGAASGVIDRMIAT----RRSSYQILESFLMCYRERNVSGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGG 186 (1012)
Q Consensus 113 l~~--~~~~~~a~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~ 186 (1012)
|.- +..+.+|..+-+..+.. +.-.-+++ ....|..+-.+|-..|+..+-...|...++-..
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i-------------~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt 200 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLI-------------AAKLYFYLYLSYELEGRLADIRSFLHALLRTAT 200 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHH-------------HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 543 47788887776665432 11111111 224556666777777876666665554433223
Q ss_pred CCCC----HHHHHHHHHHHHhcCChhHHHHHHHH
Q 001797 187 SVPG----LLCCNSILNDLLRANKLKLFWKVYDV 216 (1012)
Q Consensus 187 ~~~~----~~~~~~ll~~l~~~~~~~~a~~~~~~ 216 (1012)
+..+ ...-|.||+.|...+.++.|..+...
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK 234 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSK 234 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 3323 44556666666667777777665443
No 483
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.19 E-value=3.4e+02 Score=22.33 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHHHH
Q 001797 642 GFIKEAFQLHEKMC 655 (1012)
Q Consensus 642 g~~~~A~~~~~~~~ 655 (1012)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 484
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.08 E-value=6.9e+02 Score=25.84 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhc-CC--CchHHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 001797 138 QILESFLMCYRER-NV--SGGVVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVY 214 (1012)
Q Consensus 138 ~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~ 214 (1012)
..+...+++..+. .+ .+|.+-.+|...+...+.+.+|...|-.. -.++...+ ++-.+.
T Consensus 107 ~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~-----~d~s~~a~--~ll~y~------------ 167 (312)
T KOG3024|consen 107 TFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS-----EDGSKFAY--MLLEYS------------ 167 (312)
T ss_pred HHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc-----CChHHHHH--HHHHHH------------
Confidence 3444555554443 22 37889999999999999999999998654 22344433 211111
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 001797 215 DVMLEAKVTPDVYTYTSLINAHFRAGNV 242 (1012)
Q Consensus 215 ~~m~~~~~~~~~~~~~~li~~~~~~g~~ 242 (1012)
.-......||++.-+++++.+|-....
T Consensus 168 -~~r~f~~e~d~f~~~aVlq~L~len~~ 194 (312)
T KOG3024|consen 168 -MSRGFKSEPDVFYVQAVLQYLCLENDS 194 (312)
T ss_pred -hhcccccCchHHHHHHHHHHHhhcchH
Confidence 112234678999999999999876543
No 485
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.03 E-value=4.2e+02 Score=23.33 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhh----CC-CCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHH
Q 001797 907 QNVYTSLANSLCKEEEFYKVLKLLDEMGD----KE-IKLSHATCCILI-----SSVYEAGNIDKATRFLESMIK 970 (1012)
Q Consensus 907 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p~~~~~~~ll-----~~~~~~g~~~~A~~~~~~~~~ 970 (1012)
..++..|..++...|++++++...+..+. +| +..+....|... .++...|+.++|...|+..-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 34555566677777777776665555441 22 344444333321 125677888888888776443
No 486
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.93 E-value=8.3e+02 Score=26.75 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001797 768 SSFNALLNGLCKSQKIFEANKLLEDMADKHITP--NHVTYTILIDYHCKAGTMKDAEHLLVEMQ 829 (1012)
Q Consensus 768 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 829 (1012)
.++..++..|..+|+++.|++.|.+..+....- ....|..++..-.-.|+|.....+..+..
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 345556666666666666666666644431111 11234444444445555555544444443
No 487
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=27.44 E-value=1.3e+03 Score=28.96 Aligned_cols=249 Identities=11% Similarity=0.064 Sum_probs=133.6
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 380 NPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCRCSDLEGACRVFEEMIACGLKPNNFVYTTL 459 (1012)
Q Consensus 380 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 459 (1012)
.+|..+-...+..+.+.+.. ++...+.++++. +|...-...+.++.+.+........+..++.. +|..+-...
T Consensus 632 D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A 704 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAA 704 (897)
T ss_pred CCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHH
Confidence 45666666666666666653 344555555532 34444445555554443222222333344432 455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCchhhHHHHHHHHHhcCCH
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM 539 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 539 (1012)
+..+...+.-+ ...+.. +.+ .+|...-...+.++.+.+..+. +..... .++...-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccc
Confidence 55554433211 122222 332 2465555556666665554322 222222 24555555566666666544
Q ss_pred HH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 001797 540 QA-ADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSE 618 (1012)
Q Consensus 540 ~~-A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 618 (1012)
+. +...+..+.+ .++..+-...+..+.+.|....+...+..++.. ++...-...+.++...+. +++...+..
T Consensus 773 ~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 773 GAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 32 3444555554 467777888888888888766554555555543 355555666667776665 456666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 001797 619 LQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCES 657 (1012)
Q Consensus 619 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 657 (1012)
+.+ .|+...-...+.++.+......+...+..+.+.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 664 356666667777777654345666677666653
No 488
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=27.27 E-value=4.3e+02 Score=23.24 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=38.6
Q ss_pred hcCCHHHHHHHHHHHHH--CCCCC---------ChHHHHHHHHHHHccCChhHHHHHHHHHHH----c-CCCCCH-HHHH
Q 001797 814 KAGTMKDAEHLLVEMQK--RVLKP---------NFRTYTSLLHGYAGIGKRSEMFALFDEMVE----R-GVEPDG-VIYS 876 (1012)
Q Consensus 814 ~~g~~~~A~~~~~~~~~--~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~~-~~~~ 876 (1012)
..|.+++|..-.++..+ ..++| |...+..|..++...|++++++.-.+..+. + .+..|. ..|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 45566666555554432 22222 123444556666667777766655554442 1 122222 2222
Q ss_pred H----HHHHHHhcCChHHHHHHHHHH
Q 001797 877 M----MVDAYLKEGNMMKTIKLVDEM 898 (1012)
Q Consensus 877 ~----l~~~~~~~g~~~~A~~~~~~~ 898 (1012)
. -+.++-..|+.++|++.|+..
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 2 123455566666666666543
No 489
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.98 E-value=2.7e+02 Score=28.47 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=30.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CC-ccCHHHHHHHHHHHhccccHHHHHHHHHHH
Q 001797 877 MMVDAYLKEGNMMKTIKLVDEMFLR----GL-VLNQNVYTSLANSLCKEEEFYKVLKLLDEM 933 (1012)
Q Consensus 877 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 933 (1012)
.++..|...|++++|.++++.+... |. .....+...+..+....|+.++.+...-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666677777777777666432 11 122344444555555556655555554444
No 490
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=7.1e+02 Score=25.49 Aligned_cols=230 Identities=11% Similarity=0.097 Sum_probs=133.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHhc-CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHH
Q 001797 745 RDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKS-QKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMK-DAE 822 (1012)
Q Consensus 745 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~ 822 (1012)
+...-++|+.+.+.++..+|.+..+|..--.++-.. .++.+-++.++++.+. .+.+-..|..--......|++. .-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccchH
Confidence 445667888999999999988876665433333322 2466667788888775 3556666665555555667776 677
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cC-----ChHHHHHHHH
Q 001797 823 HLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLK-EG-----NMMKTIKLVD 896 (1012)
Q Consensus 823 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g-----~~~~A~~~~~ 896 (1012)
++.+.|... -..+-.+|..--+++...+.++.-+.+..++++..+. +...|+.-.-.... .| ..+.-+.+..
T Consensus 134 ef~~~~l~~-DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~ 211 (318)
T KOG0530|consen 134 EFTKLMLDD-DAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYTK 211 (318)
T ss_pred HHHHHHHhc-cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHHH
Confidence 788888763 3345567777777787888899999999999875554 33344432211111 12 2233344455
Q ss_pred HHHHcCCccCHHHHHHHHHHHhc-cc--cHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHH------HhcCCHH---HHHH
Q 001797 897 EMFLRGLVLNQNVYTSLANSLCK-EE--EFYKVLKLLDEMGDKEIKLSHATC-CILISSV------YEAGNID---KATR 963 (1012)
Q Consensus 897 ~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~g~~p~~~~~-~~ll~~~------~~~g~~~---~A~~ 963 (1012)
+++.. +|.+..+|+.|...+.. .| .......+...+... .....|.. ..++..| .+.+.-+ +|.+
T Consensus 212 ~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~-~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ 289 (318)
T KOG0530|consen 212 DKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQ-LPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVK 289 (318)
T ss_pred HHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhc-cCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHH
Confidence 55554 47788999999887775 44 123333444444310 11122222 2222223 2334444 6777
Q ss_pred HHHHHHHCCCccChhHH
Q 001797 964 FLESMIKFGWVADSTVM 980 (1012)
Q Consensus 964 ~~~~~~~~g~~~~~~~~ 980 (1012)
+++.+.. .+-|....+
T Consensus 290 ly~~La~-~~DpiR~ny 305 (318)
T KOG0530|consen 290 LYEDLAI-KVDPIRKNY 305 (318)
T ss_pred HHHHHhh-ccCcHHHHH
Confidence 7777652 334555554
No 491
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.13 E-value=6.5e+02 Score=28.69 Aligned_cols=234 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHH--HHHH-----HHhcCChhHHHHHHHHHHhCCCCCCHhHHHHHHHHHHhcCChhHHHHH
Q 001797 263 FELKESMIHKGLVPDCFTYSL--MVDG-----FCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRL 335 (1012)
Q Consensus 263 ~~~~~~~~~~g~~p~~~~~~~--li~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (1012)
.++.+.+++.|..|+...... .+.. .+..|..+-+..+++.-.... .++....+.+..+.. ....-.++
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~~---~~~~~~~i 123 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVN-APDNNGITPLLYAIS---KKSNSYSI 123 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC-CCCCCCCchhhHHHh---cccChHHH
Q ss_pred HHHHHhCCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHh
Q 001797 336 KNEMVTFGIKLNLFTYN--ALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTY--NSLIEGCYRENNMAKAYELLVDMKK 411 (1012)
Q Consensus 336 ~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~ 411 (1012)
++.+.+.|..++..... +.++..++.|. .-.++++.+.+.|..++.... .+.+...+..| -.++.+.+.+
T Consensus 124 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~ 197 (480)
T PHA03100 124 VEYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLD 197 (480)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHH
Q ss_pred CCCCCChhhH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 001797 412 RNLSPTAYTC--------NVIINGLCRCSDLEGACRVFEEMIACGLKPNNF--VYTTLIQAHLRQNRFEEAINILKGMTG 481 (1012)
Q Consensus 412 ~~~~~~~~~~--------~~li~~~~~~g~~~~A~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~ 481 (1012)
.|..++.... .+.+...+..|+ ...++.+.+++.|..++.. .-.+-+...+..|+ .++++.+.+
T Consensus 198 ~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~----~~iv~~Ll~ 271 (480)
T PHA03100 198 NGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN----PEFVKYLLD 271 (480)
T ss_pred cCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHH
Q ss_pred CCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHH
Q 001797 482 KGVLPDVFCYN--SLISGLCKAKKMEDARSCLV 512 (1012)
Q Consensus 482 ~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~ 512 (1012)
.|..++..... +-+...++.+..+-+..+++
T Consensus 272 ~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~ 304 (480)
T PHA03100 272 LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 304 (480)
T ss_pred cCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
No 492
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.36 E-value=4.9e+02 Score=23.21 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCcc-CHHHHHHHHHHHhccccHHHHHHHHH
Q 001797 889 MKTIKLVDEMFLRGLVL-NQNVYTSLANSLCKEEEFYKVLKLLD 931 (1012)
Q Consensus 889 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 931 (1012)
+++.++|+-|..+++.. -+..|...+..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33455555555554332 23334445555555555555555543
No 493
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=25.32 E-value=1.1e+02 Score=20.41 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=18.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHhh
Q 001797 909 VYTSLANSLCKEEEFYKVLKLLDEMGD 935 (1012)
Q Consensus 909 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 935 (1012)
+|..|+.+-...+++++|.+=|.++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566777777777777777776666543
No 494
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.22 E-value=1.2e+02 Score=31.38 Aligned_cols=28 Identities=25% Similarity=0.460 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 001797 317 TTLINGFMKQGNLQEAFRLKNEMVTFGI 344 (1012)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (1012)
+..|..-.+.||+++|+.+++++.+.|+
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4555555666666666666666665553
No 495
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=25.20 E-value=3.9e+02 Score=23.09 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 001797 316 YTTLINGFMKQGNLQEAFRLKNEMVT 341 (1012)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (1012)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777776665
No 496
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=24.81 E-value=4.5e+02 Score=22.65 Aligned_cols=26 Identities=35% Similarity=0.348 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYD 306 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~ 306 (1012)
|..|+..|...|..++|.+++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777777765
No 497
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.71 E-value=8.2e+02 Score=25.58 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=33.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 001797 466 QNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVE-MTANGLKPNLYTYGAFIREYTKTGNMQAAD 543 (1012)
Q Consensus 466 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 543 (1012)
...+++.....++-.+..-.|+......+.++....+.+.+-.++..+ .++ ..-+|..|+.++|.+|+.+-.+
T Consensus 268 e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 268 EDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 334445444444333333345554433333333333444332222211 111 2335777778888877776554
No 498
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=24.27 E-value=1.6e+02 Score=30.56 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 001797 281 YSLMVDGFCKNKRLEDAKLLLKKMYDLKLNP 311 (1012)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 311 (1012)
|+.-|..-.+.||+++|+.++++..+.|..-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 3455555555666666666666665555433
No 499
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.89 E-value=2.7e+02 Score=19.73 Aligned_cols=30 Identities=7% Similarity=0.165 Sum_probs=14.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 001797 430 RCSDLEGACRVFEEMIACGLKPNNFVYTTL 459 (1012)
Q Consensus 430 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 459 (1012)
+.|-.+++...+++|.+.|+.-+...+..+
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 344444555555555555554444444433
No 500
>PF15469 Sec5: Exocyst complex component Sec5
Probab=23.44 E-value=6.6e+02 Score=24.04 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 001797 156 VVFEMLIDGYRKIGFLDDAAIVFFGVVKDGGSVPGLLCCNSILNDLLRANKLKLFWKVYDVMLE 219 (1012)
Q Consensus 156 ~~~~~l~~~~~~~g~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~a~~~~~~m~~ 219 (1012)
.++.-++..-.+..++..++.++.+. +-. +..-.-|.-+.+.|+++.+...|.++..
T Consensus 58 ~~~~pll~~~~k~~~l~~~l~~l~r~-~fl------F~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 58 SVFKPLLERREKADKLRNALEFLQRN-RFL------FNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHH-HHH------HHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 34444455455555556666666554 211 1111334555677888888877776654
Done!