Query 001797
Match_columns 1012
No_of_seqs 829 out of 5046
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 16:35:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001797.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1093-1097//hhsearch_pdb/001797hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 334.6 43.5 223 460-689 279-501 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 332.6 40.8 92 277-372 83-174 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 234.2 22.8 193 194-394 29-221 (501)
4 4g26_A Pentatricopeptide repea 1.0 1 1 230.8 25.0 186 280-465 28-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 227.3 46.6 313 628-949 67-379 (388)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 226.5 47.9 379 532-921 8-387 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 215.9 40.1 240 703-949 242-489 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 209.2 40.3 244 664-913 238-489 (514)
9 3fp2_A TPR repeat-containing p 1.0 1 1 204.2 39.1 225 706-935 251-490 (537)
10 3fp2_A TPR repeat-containing p 1.0 1 1 198.2 38.6 49 851-901 442-491 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=334.58 Aligned_cols=223 Identities=11% Similarity=0.024 Sum_probs=74.7
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999619988999999996639999899889999999990799889999999999889997531299999999950998
Q 001797 460 IQAHLRQNRFEEAINILKGMTGKGVLPDVFCYNSLISGLCKAKKMEDARSCLVEMTANGLKPNLYTYGAFIREYTKTGNM 539 (1012)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 539 (1012)
+..|.+.|++++|..+|+++.+. +++..+++.++..+.+.|++++|..+|+++...+.. +..++..++..+.+.|+.
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEK 355 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCH
T ss_pred HHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCH
T ss_conf 99980731399999999876438--830999999999999846899999999999972955-379999999999982777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999999899998999899999999962996789999999972999988998999999998249999999999999
Q 001797 540 QAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHEALEVFSEL 619 (1012)
Q Consensus 540 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 619 (1012)
++|..+++.+.+.. +.+..++..++..|.+.|++++|.+.|+++.... +.+..+|+.++..+.+.|++++|+++|+++
T Consensus 356 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 79999999998518-3547999999999998356999999999998729-777899999999999757779999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 7599997897899999999964998999999999988899878665999999999539999999999998
Q 001797 620 QDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGI 689 (1012)
Q Consensus 620 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 689 (1012)
...++ .+..++..++..+.+.|++++|...|+++.+.. +.+..++..++..+.+.|++++|.++|+++
T Consensus 434 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 434 ARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 98681-343899999999998579999999999999848-887679999999999818999999999999
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=332.63 Aligned_cols=92 Identities=13% Similarity=-0.025 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 89879999999994599468999999998689998886799999999945996689999999986999868998999999
Q 001797 277 DCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNALIG 356 (1012)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (1012)
+...|+.++..+.+.|++++|..+|+++... .|+..++..++..|.+.|++++|..+++.+... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHHH
T ss_conf 9999999999998745834799999999960--899357999999999747699999999987335--456508999999
Q ss_pred HHHHCCCHHHHHHHHH
Q ss_conf 9996399779999999
Q 001797 357 GICKAGEIEKAKGLMT 372 (1012)
Q Consensus 357 ~~~~~g~~~~A~~~~~ 372 (1012)
+|++.|++++|..+|+
T Consensus 159 ~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLG 174 (597)
T ss_dssp HHHHTTCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9998866999999984
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=234.18 Aligned_cols=193 Identities=17% Similarity=0.184 Sum_probs=71.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 99999999953983489999999986898988612999999999329957899999999982127679999999998489
Q 001797 194 CNSILNDLLRANKLKLFWKVYDVMLEAKVTPDVYTYTSLINAHFRAGNVKAAQRVLFEMEEKVGAIDEAFELKESMIHKG 273 (1012)
Q Consensus 194 ~~~ll~~l~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 273 (1012)
++.++..+.+.|++++|..+|++|.+.|+.||..+||++|.+|++.+...++. ..+..++|.++|++|...|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~--------~~~~l~~A~~lf~~M~~~G 100 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS--------PNPGLSRGFDIFKQMIVDK 100 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS--------CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH--------HCCHHHHHHHHHHHHHHHC
T ss_conf 99999999859899999999999998189987839999999998578304333--------2124999999999999808
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99789879999999994599468999999998689998886799999999945996689999999986999868998999
Q 001797 274 LVPDCFTYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGNLQEAFRLKNEMVTFGIKLNLFTYNA 353 (1012)
Q Consensus 274 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 353 (1012)
+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.
T Consensus 101 ~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~ 180 (501)
T 4g26_A 101 VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAA 180 (501)
T ss_dssp CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99989999999999984697788999999999728988611104899999988899999999999986299999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 99999963997799999999998699988666999999998
Q 001797 354 LIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCY 394 (1012)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~ 394 (1012)
|+.+|++.|+.++|..++++|...|..|+..||+.++..++
T Consensus 181 Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 181 LLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99998538989999999999999489969999999999983
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=230.80 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 7999999999459946899999999868999888679999999994599---------6689999999986999868998
Q 001797 280 TYSLMVDGFCKNKRLEDAKLLLKKMYDLKLNPNEVVYTTLINGFMKQGN---------LQEAFRLKNEMVTFGIKLNLFT 350 (1012)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~g~~~~~~~ 350 (1012)
.++.+|++||+.|++++|.++|++|.+.|+.||.++|+.+|.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999963997799999999998699988666999999998139998999999999859999884119999999981
Q 001797 351 YNALIGGICKAGEIEKAKGLMTEMLRLGINPDTQTYNSLIEGCYRENNMAKAYELLVDMKKRNLSPTAYTCNVIINGLCR 430 (1012)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 430 (1012)
|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 49987899999999988999798999999999996
Q 001797 431 CSDLEGACRVFEEMIACGLKPNNFVYTTLIQAHLR 465 (1012)
Q Consensus 431 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 465 (1012)
.|+.++|.+++++|.+.+..|+..+|+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 89899999999999994899699999999999830
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=227.27 Aligned_cols=313 Identities=14% Similarity=0.056 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 97899999999964998999999999988899878665999999999539999999999998868999899999999999
Q 001797 628 VITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDG 707 (1012)
Q Consensus 628 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 707 (1012)
...+..+...+...|++++|...|+++.+.. +.+...+..++..+...|++++|...|+++.... +.+...+..+...
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 6999999999987799999999999998749-6539999999999998589999999999999759-8968999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99729998999999983329999899999999999980699999999999999859986456999999998318699999
Q 001797 708 YCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEAN 787 (1012)
Q Consensus 708 ~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 787 (1012)
+...|++++|...++++... .+.+...+..++..+...|++++|...|+++++.+|.....+..++..+...|++++|.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99846899999999999872-98978999999999998599999999999998559886799999999999857899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999886899989778999999999529988999999999977999776779999999980699668999999999839
Q 001797 788 KLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVERG 867 (1012)
Q Consensus 788 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 867 (1012)
..+++..+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++++.
T Consensus 224 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 300 (388)
T 1w3b_A 224 AAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL- 300 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
T ss_conf 9999998529-687899999999999868899999999999864-9998899999999999869979999999999864-
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 88898899999999996299578999999999839866889999999987500648789999999954799879887999
Q 001797 868 VEPDGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMGDKEIKLSHATCCI 947 (1012)
Q Consensus 868 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 947 (1012)
.+.+...+..++.++...|++++|...++++++.. |.+...+..++.++...|++++|.+.++++.+ +.|+....+.
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~ 377 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYS 377 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHH
T ss_conf 94449999999999998489999999999998609-87399997799999986888999999999986--1999789998
Q ss_pred HH
Q ss_conf 99
Q 001797 948 LI 949 (1012)
Q Consensus 948 l~ 949 (1012)
.+
T Consensus 378 ~l 379 (388)
T 1w3b_A 378 NM 379 (388)
T ss_dssp HH
T ss_pred HH
T ss_conf 59
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=226.53 Aligned_cols=379 Identities=14% Similarity=0.095 Sum_probs=185.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99950998999999999998999989998999999999629967899999999729999889989999999982499999
Q 001797 532 EYTKTGNMQAADRYFQEMLNCGIAPNDIIYTTLIDGHCKEGNVKEAFSTFRCMLGRGILPDLKTYSVLIHGLSRCGKIHE 611 (1012)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 611 (1012)
.+.+.|++++|...+..+.+.. |.+...+..+...+...|++++|...++...... +.+...|..++..+...|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9987799999999999999849-7889999999999998689999999999997619-7866999999999987799999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999759999789789999999996499899999999998889987866599999999953999999999999886
Q 001797 612 ALEVFSELQDKGLVPDVITYSSLISGFCKQGFIKEAFQLHEKMCESGITPNIVTYNALIDGLCKSGELERARELFDGIFA 691 (1012)
Q Consensus 612 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 691 (1012)
|...|+++....+. +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++..
T Consensus 86 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999874965-39999999999998589999999999999759-89689999999999984689999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 89998999999999999972999899999998332999989999999999998069999999999999985998645699
Q 001797 692 KGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFN 771 (1012)
Q Consensus 692 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 771 (1012)
.. +.+..+|..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++++...|....++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 29-8978999999999998599999999999998559-886799999999999857899999999999852968789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999983186999999999988689998977899999999952998899999999997799977677999999998069
Q 001797 772 ALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIG 851 (1012)
Q Consensus 772 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 851 (1012)
.++.++...|++++|...++++++.. +.+...+..++..+.+.|++++|...++++.+. .+.+...+..++..+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCC
T ss_conf 99999998688999999999998649-998899999999999869979999999999864-9444999999999999848
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9668999999999839888-988999999999962995789999999998398668899999999875006
Q 001797 852 KRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEE 921 (1012)
Q Consensus 852 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 921 (1012)
++++|...++++++ ..| +...+..++.++...|++++|...++++.+.. |.....|..++.++...|
T Consensus 320 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
T ss_conf 99999999999986--098739999779999998688899999999998619-997899985999998745
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=215.92 Aligned_cols=240 Identities=11% Similarity=0.030 Sum_probs=103.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999997299989999999833299998999999999999806999999999999998599864569999999983186
Q 001797 703 TIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQK 782 (1012)
Q Consensus 703 ~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 782 (1012)
.+...+...|++++|...++++... .|+...+..++..+...|++++|...+++++...|....++..++.++...|+
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIEL--FPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999878999999999999863--86489999999999988889999999999861386778999999999998077
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999998868999897789999999995299889999999999779997767799999999806996689999999
Q 001797 783 IFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDE 862 (1012)
Q Consensus 783 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 862 (1012)
+++|...++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999998738-502899999999999868999999999999987-546778999999999878899999999999
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 998398-889----8899999999996---29957899999999983986688999999998750064878999999995
Q 001797 863 MVERGV-EPD----GVIYSMMVDAYLK---EGNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLLDEMG 934 (1012)
Q Consensus 863 ~~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 934 (1012)
+.+... .++ ...+..++.++.. .|++++|...++++.... |.+...+..++.++...|++++|.+.++++.
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 997612332178999999999999866332588899999999998758-5558999999999998257999999999998
Q ss_pred HCCCCCCHHHHHHHH
Q ss_conf 479987988799999
Q 001797 935 DKEIKLSHATCCILI 949 (1012)
Q Consensus 935 ~~g~~p~~~~~~~l~ 949 (1012)
+ +.|+++..+..+
T Consensus 477 ~--~~~~~~~~~~~~ 489 (514)
T 2gw1_A 477 D--LARTMEEKLQAI 489 (514)
T ss_dssp H--HCSSHHHHHHHH
T ss_pred H--HCCCCHHHHHHH
T ss_conf 7--661468899999
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=209.21 Aligned_cols=244 Identities=9% Similarity=-0.018 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 65999999999539999999999998868999899999999999997299989999999833299998999999999999
Q 001797 664 VTYNALIDGLCKSGELERARELFDGIFAKGLTPTVVTYTTIIDGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGC 743 (1012)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~ 743 (1012)
..+..++..+...|++++|...++++.... |+...+..+...+...|++++|...++++... .+.+...+..++..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH
T ss_conf 999999999998789999999999998638--64899999999999888899999999998613-867789999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 80699999999999999859986456999999998318699999999998868999897789999999995299889999
Q 001797 744 CRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFEANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEH 823 (1012)
Q Consensus 744 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 823 (1012)
...|++++|...++++++..|.....+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|..
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 98077999999999998738502899999999999868999999999999987-54677899999999987889999999
Q ss_pred HHHHHHHCC-CCCC----HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 999999779-9977----6779999999980---6996689999999998398889889999999999629957899999
Q 001797 824 LLVEMQKRV-LKPN----FRTYTSLLHGYAG---IGKRSEMFALFDEMVERGVEPDGVIYSMMVDAYLKEGNMMKTIKLV 895 (1012)
Q Consensus 824 ~~~~~~~~~-~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 895 (1012)
.++++.... ..++ ...+..++..+.. .|++++|...++++++.. +.+...+..++.++...|++++|...+
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 9999997612332178999999999999866332588899999999998758-555899999999999825799999999
Q ss_pred HHHHHCCCCCCHHHHHHH
Q ss_conf 999983986688999999
Q 001797 896 DEMFLRGLVLNQNVYTSL 913 (1012)
Q Consensus 896 ~~~~~~~~~~~~~~~~~l 913 (1012)
+++.+.. |.+...+..+
T Consensus 473 ~~a~~~~-~~~~~~~~~~ 489 (514)
T 2gw1_A 473 EESADLA-RTMEEKLQAI 489 (514)
T ss_dssp HHHHHHC-SSHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHH
T ss_conf 9998766-1468899999
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=204.25 Aligned_cols=225 Identities=13% Similarity=0.046 Sum_probs=96.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 99997299989999999833299998999999999999806999999999999998599864569999999983186999
Q 001797 706 DGYCKSGNLTEAFQLVNEMPSRGVTPDNFVYCTLVDGCCRDGNMEKALSLFLEMVQKGLASTSSFNALLNGLCKSQKIFE 785 (1012)
Q Consensus 706 ~~~~~~g~~~~A~~l~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 785 (1012)
..+...|++++|...++++... .|+...+..++..+...|++++|...++++++..|....++..++..+...|++++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9987545578999999999866--98746999999999980379999999999754599987999999999986689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999998868999897789999999995299889999999999779997767799999999806996689999999998
Q 001797 786 ANKLLEDMADKHITPNHVTYTILIDYHCKAGTMKDAEHLLVEMQKRVLKPNFRTYTSLLHGYAGIGKRSEMFALFDEMVE 865 (1012)
Q Consensus 786 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 865 (1012)
|...++++.+.. +.+...+..++..+...|++++|...++++.+. .+.+...+..++..+...|++++|...++++++
T Consensus 329 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999999999859-997799999999999847799999999999873-999859999999999883788999999999987
Q ss_pred CCCC-C----CHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 3988-8----988999999999962----------995789999999998398668899999999875006487899999
Q 001797 866 RGVE-P----DGVIYSMMVDAYLKE----------GNMMKTIKLVDEMFLRGLVLNQNVYTSLANSLCKEEEFYKVLKLL 930 (1012)
Q Consensus 866 ~~~~-p----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 930 (1012)
.... + ....+..++.++... |++++|+..++++.+.. |.+...+..++.++...|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 0976244688899999889999997640100224757999999999999749-997899999999999851499999999
Q ss_pred HHHHH
Q ss_conf 99954
Q 001797 931 DEMGD 935 (1012)
Q Consensus 931 ~~~~~ 935 (1012)
+++.+
T Consensus 486 ~~al~ 490 (537)
T 3fp2_A 486 EDSAI 490 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=198.24 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99668999999999839888-9889999999999629957899999999983
Q 001797 851 GKRSEMFALFDEMVERGVEP-DGVIYSMMVDAYLKEGNMMKTIKLVDEMFLR 901 (1012)
Q Consensus 851 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 901 (1012)
|++++|...++++++. .| +...+..++.++...|++++|...++++.+.
T Consensus 442 ~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 442 EKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 5799999999999974--9997899999999999851499999999999986
Done!