Query 001799
Match_columns 1011
No_of_seqs 321 out of 1478
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 09:36:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2053 Mitochondrial inherita 100.0 2E-134 4E-139 1178.8 72.7 923 4-1005 1-932 (932)
2 PF09797 NatB_MDM20: N-acetylt 100.0 3.4E-61 7.4E-66 552.0 39.2 361 265-663 1-365 (365)
3 KOG1156 N-terminal acetyltrans 100.0 3E-28 6.5E-33 279.3 44.5 503 15-622 10-563 (700)
4 TIGR02917 PEP_TPR_lipo putativ 99.8 1.1E-16 2.3E-21 200.8 53.8 240 22-276 441-680 (899)
5 TIGR02917 PEP_TPR_lipo putativ 99.8 2.3E-16 4.9E-21 197.9 55.3 257 11-276 21-306 (899)
6 PF12569 NARP1: NMDA receptor- 99.8 8.3E-17 1.8E-21 190.7 35.4 335 194-622 2-386 (517)
7 TIGR00990 3a0801s09 mitochondr 99.8 8.2E-15 1.8E-19 180.0 46.9 405 17-533 132-568 (615)
8 PRK11447 cellulose synthase su 99.8 9.6E-15 2.1E-19 191.1 50.4 244 19-274 276-538 (1157)
9 PRK15174 Vi polysaccharide exp 99.7 8.9E-15 1.9E-19 180.5 39.7 245 18-277 48-296 (656)
10 KOG4626 O-linked N-acetylgluco 99.7 3.6E-15 7.9E-20 170.4 29.9 436 14-533 50-516 (966)
11 PRK15174 Vi polysaccharide exp 99.7 2.5E-14 5.3E-19 176.6 39.5 243 21-278 85-331 (656)
12 PRK11447 cellulose synthase su 99.7 4.7E-13 1E-17 175.4 50.1 245 11-265 27-337 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.7 2.2E-14 4.8E-19 176.2 33.9 239 25-278 307-555 (615)
14 KOG4626 O-linked N-acetylgluco 99.7 1.5E-14 3.3E-19 165.4 26.7 235 24-273 230-464 (966)
15 PRK11788 tetratricopeptide rep 99.7 4.6E-13 1E-17 154.4 37.9 253 14-277 37-294 (389)
16 KOG2002 TPR-containing nuclear 99.6 1.2E-11 2.6E-16 148.9 42.0 234 28-272 146-383 (1018)
17 PRK10049 pgaA outer membrane p 99.6 2.1E-11 4.5E-16 153.5 46.0 233 23-264 60-305 (765)
18 KOG1126 DNA-binding cell divis 99.6 1.5E-13 3.3E-18 160.3 22.1 256 14-278 321-604 (638)
19 PRK10049 pgaA outer membrane p 99.5 6.9E-12 1.5E-16 157.8 35.3 85 16-107 87-171 (765)
20 PRK12370 invasion protein regu 99.5 1.1E-12 2.4E-17 159.1 27.0 220 25-260 274-502 (553)
21 PRK11788 tetratricopeptide rep 99.5 6.7E-12 1.5E-16 144.8 30.4 241 19-275 76-325 (389)
22 PRK11189 lipoprotein NlpI; Pro 99.5 5E-12 1.1E-16 141.6 27.9 228 26-272 40-278 (296)
23 KOG2076 RNA polymerase III tra 99.5 1.9E-11 4.1E-16 146.6 33.9 260 13-278 140-496 (895)
24 PF13429 TPR_15: Tetratricopep 99.5 8.7E-14 1.9E-18 154.1 13.2 249 14-279 10-262 (280)
25 KOG2002 TPR-containing nuclear 99.5 5.6E-11 1.2E-15 143.3 37.0 129 24-155 248-377 (1018)
26 PRK14574 hmsH outer membrane p 99.5 9.9E-10 2.1E-14 137.5 47.8 196 13-223 35-230 (822)
27 PRK09782 bacteriophage N4 rece 99.5 1.3E-11 2.9E-16 156.8 31.8 227 25-269 489-715 (987)
28 TIGR02521 type_IV_pilW type IV 99.5 3E-11 6.4E-16 126.4 27.9 197 17-262 36-234 (234)
29 KOG1126 DNA-binding cell divis 99.5 9.5E-13 2.1E-17 153.7 17.3 218 34-266 409-626 (638)
30 PRK11189 lipoprotein NlpI; Pro 99.5 1.2E-11 2.7E-16 138.5 24.9 203 22-236 74-276 (296)
31 TIGR00540 hemY_coli hemY prote 99.4 1.2E-10 2.7E-15 136.3 34.2 254 16-277 88-347 (409)
32 PRK09782 bacteriophage N4 rece 99.4 2.7E-11 5.8E-16 154.1 30.4 234 15-265 512-745 (987)
33 PRK10747 putative protoheme IX 99.4 1.9E-10 4.1E-15 134.2 34.3 249 16-276 88-372 (398)
34 PRK12370 invasion protein regu 99.4 4.5E-11 9.8E-16 145.2 30.1 222 42-277 252-487 (553)
35 KOG1173 Anaphase-promoting com 99.3 1.3E-10 2.9E-15 133.6 24.6 253 17-277 249-534 (611)
36 TIGR02521 type_IV_pilW type IV 99.3 9.8E-10 2.1E-14 114.9 27.3 183 46-275 31-213 (234)
37 COG3063 PilF Tfp pilus assembl 99.3 5.5E-10 1.2E-14 116.8 24.3 137 13-155 36-174 (250)
38 KOG1174 Anaphase-promoting com 99.3 2.2E-10 4.7E-15 127.2 22.4 234 23-271 243-511 (564)
39 PRK10747 putative protoheme IX 99.3 1E-09 2.2E-14 128.1 28.8 222 20-260 126-390 (398)
40 KOG1173 Anaphase-promoting com 99.3 5.4E-10 1.2E-14 128.7 25.0 254 13-274 209-498 (611)
41 TIGR00540 hemY_coli hemY prote 99.3 1.2E-09 2.6E-14 128.0 28.9 228 22-260 163-399 (409)
42 PRK14574 hmsH outer membrane p 99.3 1.8E-08 3.9E-13 126.4 40.5 230 24-262 80-358 (822)
43 PLN02789 farnesyltranstransfer 99.3 1.5E-09 3.3E-14 122.6 28.1 237 24-269 49-311 (320)
44 KOG2376 Signal recognition par 99.2 1.7E-07 3.7E-12 108.9 42.5 245 1-267 1-260 (652)
45 PF13429 TPR_15: Tetratricopep 99.2 4.2E-11 9E-16 132.8 13.0 222 22-260 54-277 (280)
46 TIGR03302 OM_YfiO outer membra 99.2 3.3E-09 7.2E-14 114.2 23.4 192 43-263 30-235 (235)
47 PLN03077 Protein ECB2; Provisi 99.2 4.6E-08 1E-12 125.1 37.5 221 19-260 260-484 (857)
48 KOG0624 dsRNA-activated protei 99.2 4.6E-09 1E-13 114.5 22.5 253 16-272 76-382 (504)
49 KOG1155 Anaphase-promoting com 99.1 1.1E-08 2.5E-13 115.4 25.9 230 17-260 234-495 (559)
50 KOG1125 TPR repeat-containing 99.1 1.1E-09 2.3E-14 126.8 18.3 219 50-279 289-512 (579)
51 TIGR03302 OM_YfiO outer membra 99.1 3.9E-09 8.5E-14 113.6 21.7 189 11-224 32-231 (235)
52 PLN03081 pentatricopeptide (PP 99.1 5.3E-07 1.2E-11 112.9 43.9 241 18-278 93-338 (697)
53 PLN03218 maturation of RBCL 1; 99.1 3.2E-06 7E-11 109.1 51.6 246 16-278 374-627 (1060)
54 COG2956 Predicted N-acetylgluc 99.1 2.8E-08 6.1E-13 108.2 27.8 239 18-264 41-282 (389)
55 PRK15359 type III secretion sy 99.1 8.5E-10 1.8E-14 110.6 15.1 126 28-163 9-134 (144)
56 KOG1155 Anaphase-promoting com 99.1 1.1E-08 2.3E-13 115.6 24.8 227 22-262 272-538 (559)
57 KOG0547 Translocase of outer m 99.1 7.2E-09 1.6E-13 117.5 22.3 226 22-261 336-567 (606)
58 KOG0547 Translocase of outer m 99.1 2.7E-09 5.9E-14 120.9 18.7 202 15-223 363-564 (606)
59 PF12569 NARP1: NMDA receptor- 99.1 1.2E-06 2.7E-11 104.7 41.6 68 198-266 196-263 (517)
60 KOG2003 TPR repeat-containing 99.1 1.7E-08 3.6E-13 112.9 21.9 239 25-278 469-707 (840)
61 PLN03218 maturation of RBCL 1; 99.0 9.7E-07 2.1E-11 113.8 40.9 245 20-278 445-697 (1060)
62 PLN03077 Protein ECB2; Provisi 99.0 3.4E-06 7.4E-11 108.2 45.9 424 22-547 131-594 (857)
63 PRK14720 transcript cleavage f 99.0 2.2E-08 4.8E-13 124.5 24.8 221 11-242 30-268 (906)
64 PRK15359 type III secretion sy 99.0 4.7E-09 1E-13 105.2 15.4 108 18-131 30-137 (144)
65 PRK10370 formate-dependent nit 99.0 5.8E-09 1.3E-13 110.2 16.1 124 24-153 51-177 (198)
66 cd05804 StaR_like StaR_like; a 99.0 1.4E-07 3.1E-12 107.6 28.5 246 11-260 42-336 (355)
67 KOG1129 TPR repeat-containing 99.0 1.3E-08 2.9E-13 110.4 18.0 231 22-267 233-465 (478)
68 cd05804 StaR_like StaR_like; a 99.0 5.6E-08 1.2E-12 110.9 23.5 208 42-262 2-217 (355)
69 KOG1125 TPR repeat-containing 99.0 4.1E-08 8.9E-13 113.9 21.7 234 15-263 288-530 (579)
70 KOG0553 TPR repeat-containing 99.0 4E-09 8.6E-14 114.4 12.5 105 17-127 86-190 (304)
71 KOG0548 Molecular co-chaperone 98.9 2.8E-07 6.1E-12 106.4 27.1 109 17-131 7-115 (539)
72 PLN02789 farnesyltranstransfer 98.9 1.5E-07 3.2E-12 106.5 24.0 221 25-277 33-267 (320)
73 KOG2076 RNA polymerase III tra 98.9 7.2E-07 1.6E-11 108.0 30.1 195 50-258 143-343 (895)
74 KOG0495 HAT repeat protein [RN 98.9 7.9E-07 1.7E-11 104.0 29.0 248 16-279 520-767 (913)
75 TIGR02552 LcrH_SycD type III s 98.9 2.3E-08 5.1E-13 97.9 14.2 117 33-155 4-120 (135)
76 KOG0495 HAT repeat protein [RN 98.9 6.6E-05 1.4E-09 88.4 42.6 241 16-272 483-726 (913)
77 KOG2003 TPR repeat-containing 98.9 3.3E-07 7.2E-12 102.7 22.8 208 22-245 500-708 (840)
78 PLN03081 pentatricopeptide (PP 98.9 8E-07 1.7E-11 111.3 29.1 220 19-256 266-487 (697)
79 PRK15179 Vi polysaccharide bio 98.8 2.6E-07 5.7E-12 114.1 24.0 172 55-272 58-229 (694)
80 PLN03088 SGT1, suppressor of 98.8 7E-08 1.5E-12 111.1 16.9 109 15-129 5-113 (356)
81 KOG1156 N-terminal acetyltrans 98.8 7E-05 1.5E-09 88.5 40.2 63 200-263 375-437 (700)
82 PRK15179 Vi polysaccharide bio 98.8 1.1E-07 2.4E-12 117.3 17.8 134 16-155 55-189 (694)
83 COG5010 TadD Flp pilus assembl 98.8 1.1E-06 2.4E-11 94.1 22.3 188 21-223 42-229 (257)
84 COG3071 HemY Uncharacterized e 98.8 9E-06 2E-10 91.4 30.1 237 16-264 88-361 (400)
85 COG3063 PilF Tfp pilus assembl 98.8 9.9E-07 2.1E-11 92.8 20.9 205 47-266 36-242 (250)
86 KOG0624 dsRNA-activated protei 98.7 2.8E-06 6.2E-11 93.2 24.1 222 13-271 39-263 (504)
87 TIGR02552 LcrH_SycD type III s 98.7 2.6E-07 5.6E-12 90.4 14.5 104 13-122 18-121 (135)
88 KOG1840 Kinesin light chain [C 98.7 2.6E-06 5.6E-11 101.1 25.3 234 21-260 208-479 (508)
89 KOG4162 Predicted calmodulin-b 98.7 1.1E-06 2.4E-11 105.0 21.1 247 27-279 459-732 (799)
90 KOG1129 TPR repeat-containing 98.7 1.1E-06 2.3E-11 95.9 19.1 244 16-274 181-438 (478)
91 KOG1840 Kinesin light chain [C 98.7 5.9E-06 1.3E-10 98.1 26.9 228 42-269 195-451 (508)
92 PRK10370 formate-dependent nit 98.6 7.5E-07 1.6E-11 94.2 16.0 155 51-264 21-177 (198)
93 COG4783 Putative Zn-dependent 98.6 6.2E-06 1.4E-10 94.8 24.3 181 28-241 290-470 (484)
94 COG4783 Putative Zn-dependent 98.6 9.2E-07 2E-11 101.5 17.3 132 15-152 309-440 (484)
95 KOG3060 Uncharacterized conser 98.6 4.3E-06 9.4E-11 89.0 20.5 171 18-200 58-229 (289)
96 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.3E-06 2.8E-11 82.7 14.5 105 15-122 5-112 (119)
97 COG2956 Predicted N-acetylgluc 98.6 1.9E-05 4.1E-10 86.7 24.9 204 50-267 39-250 (389)
98 KOG2376 Signal recognition par 98.6 0.00025 5.4E-09 83.2 35.4 195 18-231 52-259 (652)
99 KOG1174 Anaphase-promoting com 98.5 2.7E-05 5.9E-10 87.5 25.6 237 82-369 228-469 (564)
100 KOG4162 Predicted calmodulin-b 98.5 0.00064 1.4E-08 82.0 38.1 226 36-268 313-550 (799)
101 PRK10866 outer membrane biogen 98.5 1.8E-05 4E-10 86.4 23.1 187 11-222 31-238 (243)
102 PF12895 Apc3: Anaphase-promot 98.5 3.4E-07 7.3E-12 82.8 7.8 82 24-112 1-84 (84)
103 KOG0548 Molecular co-chaperone 98.5 1.8E-05 4E-10 91.7 23.4 240 20-277 232-472 (539)
104 KOG0550 Molecular chaperone (D 98.5 2.3E-06 5E-11 96.1 15.5 253 16-277 53-366 (486)
105 PRK10803 tol-pal system protei 98.5 2.5E-06 5.4E-11 94.0 15.7 107 13-122 143-253 (263)
106 COG5010 TadD Flp pilus assembl 98.5 1.9E-06 4.2E-11 92.3 14.1 128 21-154 75-202 (257)
107 KOG3060 Uncharacterized conser 98.5 3.6E-06 7.9E-11 89.5 15.7 124 24-153 98-224 (289)
108 COG1729 Uncharacterized protei 98.4 3E-06 6.6E-11 91.8 14.0 108 13-123 142-252 (262)
109 PLN03088 SGT1, suppressor of 98.4 4.2E-06 9.2E-11 96.4 16.1 104 49-158 5-109 (356)
110 PRK15363 pathogenicity island 98.4 4.1E-06 8.8E-11 84.4 13.8 107 38-150 26-133 (157)
111 TIGR02795 tol_pal_ybgF tol-pal 98.4 7.2E-06 1.6E-10 77.6 14.9 109 47-158 3-114 (119)
112 cd00189 TPR Tetratricopeptide 98.4 3.6E-06 7.8E-11 73.6 11.2 91 21-117 9-99 (100)
113 PRK10866 outer membrane biogen 98.4 6.2E-05 1.3E-09 82.2 23.1 184 45-257 31-238 (243)
114 cd00189 TPR Tetratricopeptide 98.4 4.5E-06 9.7E-11 73.0 11.7 98 48-151 2-99 (100)
115 PF09976 TPR_21: Tetratricopep 98.3 1.9E-05 4.1E-10 79.1 16.4 125 14-145 13-143 (145)
116 PF13525 YfiO: Outer membrane 98.3 7.1E-05 1.5E-09 79.5 21.2 176 13-251 6-198 (203)
117 PRK15363 pathogenicity island 98.3 8E-06 1.7E-10 82.3 13.0 97 16-118 39-135 (157)
118 PF13414 TPR_11: TPR repeat; P 98.3 3.7E-06 8E-11 72.7 9.0 67 45-117 2-69 (69)
119 PF13432 TPR_16: Tetratricopep 98.3 3E-06 6.5E-11 72.5 8.1 64 51-120 2-65 (65)
120 CHL00033 ycf3 photosystem I as 98.2 2.2E-05 4.7E-10 80.5 15.1 119 21-142 8-135 (168)
121 PF04733 Coatomer_E: Coatomer 98.2 2.8E-05 6E-10 87.1 17.0 238 16-279 5-249 (290)
122 PRK10153 DNA-binding transcrip 98.2 2.3E-05 4.9E-10 94.4 17.3 128 26-158 356-491 (517)
123 PF13525 YfiO: Outer membrane 98.2 6.2E-05 1.3E-09 79.9 18.7 119 34-155 30-176 (203)
124 PRK02603 photosystem I assembl 98.2 2.3E-05 4.9E-10 80.8 13.2 94 43-139 32-125 (172)
125 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.7E-05 5.8E-10 90.3 14.8 125 11-144 167-292 (395)
126 KOG0543 FKBP-type peptidyl-pro 98.1 2.7E-05 5.8E-10 88.3 14.1 116 18-139 214-344 (397)
127 COG4235 Cytochrome c biogenesi 98.1 3.5E-05 7.7E-10 84.6 14.7 127 21-153 131-260 (287)
128 PF13414 TPR_11: TPR repeat; P 98.1 1E-05 2.2E-10 69.9 8.4 67 85-151 2-69 (69)
129 KOG0553 TPR repeat-containing 98.1 2.6E-05 5.7E-10 85.2 12.5 106 52-164 87-192 (304)
130 COG4235 Cytochrome c biogenesi 98.1 0.00011 2.4E-09 80.8 17.0 126 101-233 137-264 (287)
131 KOG1128 Uncharacterized conser 98.1 0.0006 1.3E-08 81.8 23.8 202 46-277 398-599 (777)
132 PRK02603 photosystem I assembl 98.1 6.7E-05 1.4E-09 77.3 14.2 98 16-119 39-153 (172)
133 PF09976 TPR_21: Tetratricopep 98.1 0.00024 5.1E-09 71.2 17.6 120 98-258 23-145 (145)
134 PF14559 TPR_19: Tetratricopep 98.0 1.4E-05 3.1E-10 68.7 7.5 67 22-94 1-67 (68)
135 PRK14720 transcript cleavage f 98.0 0.0004 8.6E-09 87.3 22.8 223 41-277 26-269 (906)
136 PF13432 TPR_16: Tetratricopep 98.0 2E-05 4.3E-10 67.4 7.7 64 91-154 2-65 (65)
137 KOG1127 TPR repeat-containing 98.0 0.00045 9.8E-09 84.9 21.2 240 23-277 410-676 (1238)
138 KOG2053 Mitochondrial inherita 98.0 0.056 1.2E-06 66.9 38.3 92 57-154 20-111 (932)
139 PRK10803 tol-pal system protei 98.0 0.00015 3.2E-09 80.1 15.4 103 47-155 143-252 (263)
140 CHL00033 ycf3 photosystem I as 97.9 0.00019 4.2E-09 73.5 14.8 100 16-121 39-155 (168)
141 KOG1915 Cell cycle control pro 97.9 0.088 1.9E-06 61.0 40.4 237 24-276 85-333 (677)
142 COG4105 ComL DNA uptake lipopr 97.9 0.0033 7.2E-08 68.1 23.5 199 9-264 31-236 (254)
143 KOG1070 rRNA processing protei 97.9 0.0055 1.2E-07 78.0 28.4 224 31-268 1443-1673(1710)
144 PF14559 TPR_19: Tetratricopep 97.9 4.2E-05 9.1E-10 65.8 7.5 59 97-155 2-60 (68)
145 KOG3081 Vesicle coat complex C 97.9 0.0047 1E-07 66.8 24.0 240 14-279 10-255 (299)
146 COG3071 HemY Uncharacterized e 97.9 0.0026 5.7E-08 72.1 23.1 227 16-260 157-390 (400)
147 KOG0550 Molecular chaperone (D 97.8 0.00049 1.1E-08 77.9 16.3 180 31-224 151-349 (486)
148 KOG1915 Cell cycle control pro 97.8 0.0085 1.8E-07 69.0 26.2 241 24-274 219-480 (677)
149 PRK04841 transcriptional regul 97.8 0.0035 7.5E-08 81.0 26.6 236 22-262 501-762 (903)
150 KOG3785 Uncharacterized conser 97.8 0.096 2.1E-06 58.7 33.2 174 87-277 58-231 (557)
151 COG0457 NrfG FOG: TPR repeat [ 97.8 0.016 3.4E-07 58.0 25.3 226 25-263 36-268 (291)
152 PF13371 TPR_9: Tetratricopept 97.8 0.00013 2.8E-09 63.7 8.6 53 23-75 6-58 (73)
153 PRK11906 transcriptional regul 97.8 0.00033 7.2E-09 81.4 14.3 122 27-154 273-406 (458)
154 KOG3785 Uncharacterized conser 97.7 0.0026 5.6E-08 70.7 20.1 88 15-108 25-113 (557)
155 PRK15331 chaperone protein Sic 97.7 0.00033 7.2E-09 71.1 12.3 130 12-154 9-138 (165)
156 PF04733 Coatomer_E: Coatomer 97.7 0.00025 5.5E-09 79.4 12.7 122 23-155 113-236 (290)
157 PF13512 TPR_18: Tetratricopep 97.7 0.00054 1.2E-08 68.2 13.4 88 11-101 9-99 (142)
158 KOG1128 Uncharacterized conser 97.7 0.00031 6.7E-09 84.2 13.8 232 13-277 401-635 (777)
159 PF12688 TPR_5: Tetratrico pep 97.7 0.00043 9.2E-09 67.4 12.5 98 47-147 2-102 (120)
160 PF12895 Apc3: Anaphase-promot 97.7 0.00013 2.9E-09 65.8 7.7 82 59-145 2-83 (84)
161 COG4700 Uncharacterized protei 97.7 0.0029 6.3E-08 65.0 17.7 130 89-260 92-222 (251)
162 KOG4340 Uncharacterized conser 97.7 0.00063 1.4E-08 74.0 13.7 185 56-261 20-208 (459)
163 PF13371 TPR_9: Tetratricopept 97.7 0.00028 6.1E-09 61.5 9.1 66 53-124 2-67 (73)
164 PRK04841 transcriptional regul 97.6 0.04 8.6E-07 71.3 32.7 236 21-260 461-720 (903)
165 KOG1127 TPR repeat-containing 97.6 0.0019 4.1E-08 79.6 17.4 182 27-222 473-656 (1238)
166 KOG0543 FKBP-type peptidyl-pro 97.5 0.00067 1.4E-08 77.2 12.2 107 49-155 211-326 (397)
167 PF13424 TPR_12: Tetratricopep 97.5 0.00016 3.4E-09 64.1 5.8 74 43-116 2-76 (78)
168 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00036 7.8E-09 81.0 10.1 70 41-116 70-142 (453)
169 PRK15331 chaperone protein Sic 97.5 0.001 2.2E-08 67.6 12.2 112 11-130 36-147 (165)
170 PF13512 TPR_18: Tetratricopep 97.5 0.0019 4.1E-08 64.3 13.7 107 46-155 10-134 (142)
171 KOG4648 Uncharacterized conser 97.5 0.00032 6.9E-09 77.4 8.6 103 19-127 104-206 (536)
172 KOG1070 rRNA processing protei 97.5 0.015 3.3E-07 74.2 24.0 187 82-278 1454-1647(1710)
173 PF04184 ST7: ST7 protein; In 97.5 0.0059 1.3E-07 71.2 18.8 137 17-155 173-331 (539)
174 KOG4234 TPR repeat-containing 97.5 0.0015 3.2E-08 67.8 12.4 103 18-126 101-208 (271)
175 COG1729 Uncharacterized protei 97.5 0.0016 3.5E-08 71.0 13.5 104 49-155 144-250 (262)
176 COG0457 NrfG FOG: TPR repeat [ 97.4 0.073 1.6E-06 53.1 24.9 202 59-274 36-245 (291)
177 PRK10153 DNA-binding transcrip 97.4 0.0078 1.7E-07 72.8 19.8 73 194-268 418-490 (517)
178 PF06552 TOM20_plant: Plant sp 97.4 0.0013 2.7E-08 67.7 10.7 92 28-125 7-119 (186)
179 PF14938 SNAP: Soluble NSF att 97.4 0.0038 8.2E-08 69.8 15.6 192 24-222 47-263 (282)
180 COG4785 NlpI Lipoprotein NlpI, 97.4 0.01 2.2E-07 62.5 17.1 199 47-264 66-270 (297)
181 KOG4340 Uncharacterized conser 97.3 0.035 7.6E-07 60.9 21.3 249 16-274 14-319 (459)
182 PF13428 TPR_14: Tetratricopep 97.3 0.00051 1.1E-08 54.4 5.3 42 87-128 2-43 (44)
183 KOG2047 mRNA splicing factor [ 97.2 0.22 4.7E-06 59.9 28.2 230 37-277 340-596 (835)
184 COG4785 NlpI Lipoprotein NlpI, 97.2 0.022 4.7E-07 60.1 17.6 183 26-224 79-265 (297)
185 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0027 5.9E-08 73.8 11.8 83 22-110 210-292 (395)
186 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.002 4.4E-08 74.9 10.1 69 81-149 70-141 (453)
187 COG4700 Uncharacterized protei 97.1 0.018 4E-07 59.3 15.4 120 27-152 71-192 (251)
188 KOG0376 Serine-threonine phosp 97.0 0.00092 2E-08 77.4 6.1 107 17-129 9-115 (476)
189 PRK11906 transcriptional regul 97.0 0.0049 1.1E-07 71.9 12.0 101 25-131 317-419 (458)
190 PF14938 SNAP: Soluble NSF att 97.0 0.0061 1.3E-07 68.1 12.0 136 16-151 78-227 (282)
191 COG3118 Thioredoxin domain-con 96.9 0.013 2.9E-07 64.5 13.8 131 12-150 134-266 (304)
192 COG3898 Uncharacterized membra 96.8 0.92 2E-05 51.9 27.3 228 21-260 163-392 (531)
193 KOG3081 Vesicle coat complex C 96.7 0.098 2.1E-06 57.0 18.1 121 22-155 118-242 (299)
194 PF12688 TPR_5: Tetratrico pep 96.7 0.04 8.7E-07 53.7 13.6 90 19-114 8-103 (120)
195 PF13428 TPR_14: Tetratricopep 96.6 0.0048 1E-07 48.8 5.8 41 232-272 2-42 (44)
196 COG4105 ComL DNA uptake lipopr 96.6 0.13 2.8E-06 56.0 17.9 162 86-269 34-205 (254)
197 PF07719 TPR_2: Tetratricopept 96.4 0.0074 1.6E-07 44.3 5.2 33 87-119 2-34 (34)
198 PF00515 TPR_1: Tetratricopept 96.4 0.006 1.3E-07 45.1 4.5 33 87-119 2-34 (34)
199 PF08631 SPO22: Meiosis protei 96.3 2.4 5.2E-05 47.3 26.9 233 22-259 3-274 (278)
200 PF05843 Suf: Suppressor of fo 96.3 0.085 1.8E-06 59.0 15.2 121 28-154 17-141 (280)
201 COG2976 Uncharacterized protei 96.2 0.19 4.2E-06 52.6 16.1 152 91-265 36-193 (207)
202 KOG4642 Chaperone-dependent E3 96.2 0.013 2.9E-07 62.5 7.9 99 10-114 8-106 (284)
203 PF13281 DUF4071: Domain of un 96.2 0.14 3E-06 59.1 16.7 109 21-135 150-274 (374)
204 PF06552 TOM20_plant: Plant sp 96.2 0.053 1.2E-06 56.0 11.6 68 62-135 7-84 (186)
205 PF03704 BTAD: Bacterial trans 96.1 0.14 3.1E-06 50.9 14.5 119 11-147 5-123 (146)
206 KOG2610 Uncharacterized conser 96.1 0.96 2.1E-05 50.8 21.2 174 93-272 110-290 (491)
207 KOG4555 TPR repeat-containing 96.1 0.099 2.1E-06 51.2 12.1 91 23-115 54-144 (175)
208 COG2909 MalT ATP-dependent tra 96.0 0.95 2.1E-05 56.7 23.1 239 16-256 419-684 (894)
209 PF13424 TPR_12: Tetratricopep 96.0 0.013 2.7E-07 51.8 5.5 64 86-149 5-75 (78)
210 PF13431 TPR_17: Tetratricopep 96.0 0.0071 1.5E-07 45.3 3.2 33 108-140 1-33 (34)
211 KOG1130 Predicted G-alpha GTPa 96.0 0.22 4.7E-06 57.0 16.0 205 51-260 100-344 (639)
212 PF08424 NRDE-2: NRDE-2, neces 95.8 0.7 1.5E-05 52.8 20.2 85 82-167 15-111 (321)
213 PF13281 DUF4071: Domain of un 95.8 1 2.3E-05 52.1 21.3 181 84-267 139-341 (374)
214 PF07719 TPR_2: Tetratricopept 95.8 0.023 4.9E-07 41.7 5.3 33 232-264 2-34 (34)
215 COG2976 Uncharacterized protei 95.6 0.09 2E-06 54.9 10.5 90 21-118 98-191 (207)
216 PF00515 TPR_1: Tetratricopept 95.5 0.024 5.3E-07 41.8 4.6 33 232-264 2-34 (34)
217 KOG0545 Aryl-hydrocarbon recep 95.5 0.14 3E-06 55.1 11.5 107 47-153 179-297 (329)
218 PF13431 TPR_17: Tetratricopep 95.5 0.015 3.3E-07 43.5 3.3 32 35-66 2-33 (34)
219 COG3118 Thioredoxin domain-con 95.4 0.92 2E-05 50.5 18.0 132 85-225 133-265 (304)
220 PF05843 Suf: Suppressor of fo 95.4 0.62 1.3E-05 52.1 17.4 138 88-268 3-144 (280)
221 KOG1941 Acetylcholine receptor 95.4 0.27 5.8E-06 55.5 13.9 63 198-260 208-275 (518)
222 PF10300 DUF3808: Protein of u 95.3 0.18 4E-06 60.5 13.4 111 24-136 245-356 (468)
223 KOG4648 Uncharacterized conser 95.3 0.041 8.9E-07 61.3 7.0 51 91-141 102-152 (536)
224 KOG2300 Uncharacterized conser 95.1 2.5 5.5E-05 49.7 21.0 223 24-256 287-552 (629)
225 KOG1308 Hsp70-interacting prot 95.0 0.011 2.4E-07 66.1 1.9 95 18-118 120-214 (377)
226 KOG2471 TPR repeat-containing 95.0 0.15 3.3E-06 59.3 10.9 141 19-161 213-375 (696)
227 PF13181 TPR_8: Tetratricopept 95.0 0.047 1E-06 40.1 4.6 33 87-119 2-34 (34)
228 PF10300 DUF3808: Protein of u 94.9 5 0.00011 48.3 24.2 133 15-154 190-339 (468)
229 KOG2610 Uncharacterized conser 94.9 0.25 5.5E-06 55.2 11.9 113 24-139 115-228 (491)
230 KOG1586 Protein required for f 94.9 2.1 4.6E-05 46.1 18.1 183 25-208 47-243 (288)
231 KOG1585 Protein required for f 94.9 3.8 8.3E-05 44.5 20.0 122 24-147 43-177 (308)
232 KOG4555 TPR repeat-containing 94.7 0.65 1.4E-05 45.7 12.6 94 48-147 45-142 (175)
233 KOG2796 Uncharacterized conser 94.6 1.6 3.6E-05 47.6 16.7 133 88-228 179-317 (366)
234 PF13174 TPR_6: Tetratricopept 94.6 0.057 1.2E-06 39.1 4.1 33 87-119 1-33 (33)
235 KOG4234 TPR repeat-containing 94.5 0.41 8.9E-06 50.2 11.5 124 18-155 78-203 (271)
236 KOG2047 mRNA splicing factor [ 94.5 16 0.00035 44.7 40.4 426 25-543 151-624 (835)
237 KOG1130 Predicted G-alpha GTPa 94.3 0.78 1.7E-05 52.7 14.0 222 21-260 26-304 (639)
238 PF13181 TPR_8: Tetratricopept 94.0 0.097 2.1E-06 38.4 4.4 32 233-264 3-34 (34)
239 KOG2796 Uncharacterized conser 94.0 0.54 1.2E-05 51.2 11.6 127 17-154 153-286 (366)
240 PF13176 TPR_7: Tetratricopept 93.8 0.11 2.4E-06 39.3 4.3 32 88-119 1-34 (36)
241 KOG3617 WD40 and TPR repeat-co 93.5 8.5 0.00018 48.0 21.4 213 24-256 838-1105(1416)
242 PF02259 FAT: FAT domain; Int 93.4 17 0.00036 41.2 23.6 100 177-276 162-303 (352)
243 KOG0530 Protein farnesyltransf 93.3 16 0.00034 40.4 21.4 248 14-270 40-308 (318)
244 KOG2471 TPR repeat-containing 93.2 0.26 5.7E-06 57.4 8.0 127 8-134 236-383 (696)
245 KOG3617 WD40 and TPR repeat-co 93.1 3.7 8E-05 51.0 17.5 65 195-259 911-995 (1416)
246 PF03704 BTAD: Bacterial trans 93.0 0.56 1.2E-05 46.6 9.3 57 51-113 67-123 (146)
247 COG3898 Uncharacterized membra 92.6 25 0.00053 40.9 26.7 247 13-279 78-343 (531)
248 PF14561 TPR_20: Tetratricopep 92.5 0.88 1.9E-05 42.1 9.2 78 31-112 7-84 (90)
249 KOG1586 Protein required for f 91.9 2.6 5.7E-05 45.5 12.9 137 16-152 77-227 (288)
250 PF13174 TPR_6: Tetratricopept 91.8 0.29 6.4E-06 35.3 4.2 32 233-264 2-33 (33)
251 smart00028 TPR Tetratricopepti 91.7 0.24 5.2E-06 33.9 3.6 33 87-119 2-34 (34)
252 KOG1464 COP9 signalosome, subu 91.6 12 0.00026 41.2 17.6 220 22-271 37-276 (440)
253 KOG4507 Uncharacterized conser 91.6 0.81 1.8E-05 54.6 9.5 99 25-129 620-719 (886)
254 PRK10941 hypothetical protein; 91.4 1.5 3.2E-05 48.9 11.0 52 23-74 192-243 (269)
255 PF12968 DUF3856: Domain of Un 91.1 5.5 0.00012 38.8 12.9 99 16-114 13-128 (144)
256 KOG1914 mRNA cleavage and poly 91.1 18 0.00038 43.6 19.5 181 83-272 276-479 (656)
257 KOG3824 Huntingtin interacting 90.7 0.69 1.5E-05 51.3 7.3 64 56-125 126-189 (472)
258 KOG1941 Acetylcholine receptor 90.4 23 0.0005 40.7 18.9 191 24-223 55-273 (518)
259 PRK15180 Vi polysaccharide bio 90.4 1.6 3.4E-05 51.1 10.2 130 17-152 294-423 (831)
260 PF14853 Fis1_TPR_C: Fis1 C-te 90.3 0.82 1.8E-05 38.0 5.8 37 233-269 3-39 (53)
261 PF14853 Fis1_TPR_C: Fis1 C-te 89.9 1 2.2E-05 37.5 6.0 38 20-57 9-46 (53)
262 COG2909 MalT ATP-dependent tra 89.6 69 0.0015 40.9 23.9 240 19-260 367-647 (894)
263 PF04184 ST7: ST7 protein; In 89.5 5.9 0.00013 47.1 14.0 77 46-126 259-336 (539)
264 PF08424 NRDE-2: NRDE-2, neces 88.7 12 0.00026 42.7 16.0 94 32-131 5-110 (321)
265 PF04781 DUF627: Protein of un 88.7 2.2 4.7E-05 41.0 8.1 100 19-147 3-105 (111)
266 PF13176 TPR_7: Tetratricopept 88.4 0.74 1.6E-05 34.7 4.0 27 234-260 2-28 (36)
267 PF02259 FAT: FAT domain; Int 88.1 5.4 0.00012 45.2 12.8 119 16-134 150-306 (352)
268 KOG0551 Hsp90 co-chaperone CNS 88.0 2 4.4E-05 48.4 8.6 92 18-115 87-182 (390)
269 PRK10941 hypothetical protein; 87.8 2.2 4.8E-05 47.5 8.9 65 203-268 188-252 (269)
270 KOG3616 Selective LIM binding 87.7 26 0.00056 43.3 17.8 56 87-142 662-728 (1636)
271 KOG0985 Vesicle coat protein c 87.5 23 0.00051 45.4 17.7 174 59-277 1088-1261(1666)
272 PF04910 Tcf25: Transcriptiona 87.4 20 0.00042 41.8 16.8 30 234-263 181-225 (360)
273 KOG1585 Protein required for f 87.3 37 0.0008 37.3 17.1 74 203-277 157-240 (308)
274 PF09613 HrpB1_HrpK: Bacterial 87.2 21 0.00047 36.6 14.7 118 14-140 12-129 (160)
275 KOG0545 Aryl-hydrocarbon recep 86.9 11 0.00023 41.2 12.8 69 198-267 232-300 (329)
276 KOG0376 Serine-threonine phosp 86.5 0.78 1.7E-05 53.9 4.6 98 52-155 10-107 (476)
277 KOG1310 WD40 repeat protein [G 86.4 2 4.3E-05 50.9 7.7 102 13-120 375-479 (758)
278 PF13374 TPR_10: Tetratricopep 85.2 1.8 3.9E-05 32.7 4.8 29 87-115 3-31 (42)
279 KOG4642 Chaperone-dependent E3 85.2 2.3 4.9E-05 46.0 6.9 84 56-145 20-103 (284)
280 smart00028 TPR Tetratricopepti 84.3 1.5 3.2E-05 29.8 3.6 32 233-264 3-34 (34)
281 PF14863 Alkyl_sulf_dimr: Alky 84.3 2.1 4.6E-05 43.0 5.9 52 13-64 71-122 (141)
282 KOG0985 Vesicle coat protein c 83.7 52 0.0011 42.5 18.2 97 26-139 1089-1185(1666)
283 KOG2396 HAT (Half-A-TPR) repea 83.5 13 0.00029 44.2 12.6 58 105-163 90-147 (568)
284 KOG0529 Protein geranylgeranyl 82.9 36 0.00077 39.9 15.5 178 24-210 40-242 (421)
285 KOG2396 HAT (Half-A-TPR) repea 82.8 9.9 0.00022 45.2 11.3 77 82-159 101-178 (568)
286 PF14561 TPR_20: Tetratricopep 81.8 3.2 7E-05 38.4 5.7 47 106-152 8-54 (90)
287 PF04053 Coatomer_WDAD: Coatom 81.6 55 0.0012 39.3 17.3 104 18-145 267-372 (443)
288 KOG3824 Huntingtin interacting 81.1 3.5 7.6E-05 46.0 6.5 73 16-94 120-192 (472)
289 COG4976 Predicted methyltransf 80.7 2.3 5E-05 45.8 4.8 60 55-120 4-63 (287)
290 COG4976 Predicted methyltransf 80.2 2.1 4.6E-05 46.0 4.4 63 204-267 3-65 (287)
291 KOG3616 Selective LIM binding 80.1 81 0.0018 39.3 17.5 104 24-146 803-908 (1636)
292 COG1747 Uncharacterized N-term 80.1 1.5E+02 0.0032 35.9 25.3 192 17-225 19-234 (711)
293 KOG1914 mRNA cleavage and poly 79.8 1.5E+02 0.0033 36.0 23.0 215 36-262 269-503 (656)
294 KOG3364 Membrane protein invol 79.6 14 0.00031 36.8 9.4 76 194-269 30-109 (149)
295 PF12862 Apc5: Anaphase-promot 79.4 15 0.00032 34.0 9.3 58 20-77 6-72 (94)
296 COG3914 Spy Predicted O-linked 79.2 16 0.00034 44.4 11.5 99 25-129 80-185 (620)
297 PF12862 Apc5: Anaphase-promot 78.5 12 0.00026 34.6 8.4 65 54-118 6-73 (94)
298 PF04910 Tcf25: Transcriptiona 78.2 82 0.0018 36.7 17.0 116 17-155 15-139 (360)
299 PF10345 Cohesin_load: Cohesin 77.9 1.9E+02 0.0042 36.1 24.6 205 50-258 365-604 (608)
300 COG5191 Uncharacterized conser 77.8 3.8 8.2E-05 45.9 5.5 79 81-160 102-181 (435)
301 KOG0530 Protein farnesyltransf 77.4 64 0.0014 35.8 14.4 168 28-206 94-269 (318)
302 PRK13184 pknD serine/threonine 76.8 7.3 0.00016 50.5 8.5 95 23-124 486-590 (932)
303 PF15015 NYD-SP12_N: Spermatog 76.4 13 0.00029 43.2 9.4 89 59-147 196-289 (569)
304 PF10579 Rapsyn_N: Rapsyn N-te 75.6 16 0.00036 33.0 7.9 61 11-71 5-68 (80)
305 COG4649 Uncharacterized protei 75.2 94 0.002 32.6 14.1 130 15-148 61-195 (221)
306 PF09613 HrpB1_HrpK: Bacterial 74.3 1E+02 0.0022 31.8 14.2 66 90-155 14-79 (160)
307 KOG4814 Uncharacterized conser 74.0 15 0.00032 44.9 9.3 98 53-150 361-458 (872)
308 KOG3807 Predicted membrane pro 74.0 32 0.0007 39.0 11.4 115 19-151 191-306 (556)
309 KOG1258 mRNA processing protei 73.5 2.3E+02 0.005 34.9 20.8 114 23-141 308-421 (577)
310 PF07720 TPR_3: Tetratricopept 73.1 9.8 0.00021 29.0 5.1 33 87-119 2-36 (36)
311 KOG1308 Hsp70-interacting prot 72.5 2.7 5.9E-05 47.6 2.8 89 56-150 124-212 (377)
312 COG3629 DnrI DNA-binding trans 72.0 16 0.00035 40.9 8.6 63 87-149 154-216 (280)
313 KOG4507 Uncharacterized conser 71.2 11 0.00023 45.6 7.3 94 179-273 625-718 (886)
314 TIGR02561 HrpB1_HrpK type III 71.1 32 0.0007 34.9 9.7 79 19-103 17-95 (153)
315 COG3914 Spy Predicted O-linked 71.1 97 0.0021 38.0 15.1 117 16-139 34-154 (620)
316 COG2912 Uncharacterized conser 70.9 16 0.00035 40.5 8.3 60 56-121 191-250 (269)
317 smart00386 HAT HAT (Half-A-TPR 70.0 11 0.00024 26.5 4.7 30 245-274 1-30 (33)
318 PF11207 DUF2989: Protein of u 68.3 1.2E+02 0.0025 32.5 13.6 63 189-252 134-199 (203)
319 smart00386 HAT HAT (Half-A-TPR 68.1 10 0.00023 26.6 4.3 29 100-128 1-29 (33)
320 TIGR03362 VI_chp_7 type VI sec 67.6 2.3E+02 0.0049 32.3 18.4 60 10-70 97-156 (301)
321 PF10579 Rapsyn_N: Rapsyn N-te 67.4 20 0.00044 32.4 6.6 49 96-144 16-67 (80)
322 COG5107 RNA14 Pre-mRNA 3'-end 67.3 1.9E+02 0.0042 34.5 15.9 81 177-260 413-495 (660)
323 PF08631 SPO22: Meiosis protei 66.8 2.1E+02 0.0047 31.8 23.8 197 21-223 44-273 (278)
324 KOG4279 Serine/threonine prote 66.6 18 0.00039 44.8 8.0 160 19-185 208-394 (1226)
325 PF04781 DUF627: Protein of un 65.8 41 0.00089 32.5 8.8 23 52-74 2-24 (111)
326 PF09986 DUF2225: Uncharacteri 64.7 49 0.0011 35.7 10.3 63 86-148 118-193 (214)
327 PF09670 Cas_Cas02710: CRISPR- 63.3 1E+02 0.0022 36.1 13.5 62 13-74 132-197 (379)
328 smart00299 CLH Clathrin heavy 63.1 1.5E+02 0.0033 28.9 12.9 120 18-163 12-133 (140)
329 KOG1550 Extracellular protein 62.5 3.8E+02 0.0082 33.1 20.7 112 24-147 261-391 (552)
330 KOG0551 Hsp90 co-chaperone CNS 62.2 33 0.00072 39.1 8.5 62 93-154 88-153 (390)
331 KOG3364 Membrane protein invol 62.1 39 0.00085 33.9 8.0 37 86-122 71-107 (149)
332 TIGR02561 HrpB1_HrpK type III 62.0 17 0.00037 36.8 5.8 48 16-63 48-95 (153)
333 PF13374 TPR_10: Tetratricopep 60.9 20 0.00042 26.9 4.8 27 234-260 5-31 (42)
334 PF09986 DUF2225: Uncharacteri 60.5 37 0.00081 36.5 8.5 64 53-116 125-195 (214)
335 PF11207 DUF2989: Protein of u 59.5 1.3E+02 0.0028 32.2 12.0 72 62-139 122-197 (203)
336 PF15015 NYD-SP12_N: Spermatog 59.3 1.2E+02 0.0027 35.7 12.5 86 21-112 192-288 (569)
337 KOG1538 Uncharacterized conser 58.5 4.1E+02 0.0089 33.2 16.9 86 16-111 560-657 (1081)
338 COG4455 ImpE Protein of avirul 57.5 30 0.00065 37.3 6.8 58 96-153 11-68 (273)
339 COG5191 Uncharacterized conser 56.9 21 0.00047 40.1 5.9 83 41-129 102-185 (435)
340 PF04053 Coatomer_WDAD: Coatom 56.7 1.5E+02 0.0031 35.7 13.4 105 11-145 293-398 (443)
341 KOG2300 Uncharacterized conser 56.2 4.4E+02 0.0096 31.9 20.3 198 60-264 289-521 (629)
342 PF08311 Mad3_BUB1_I: Mad3/BUB 56.0 1.8E+02 0.0039 28.5 11.8 106 151-258 18-126 (126)
343 PRK15180 Vi polysaccharide bio 54.7 31 0.00067 40.9 6.9 27 196-222 323-349 (831)
344 KOG1550 Extracellular protein 54.4 5.1E+02 0.011 32.0 21.7 218 27-264 308-542 (552)
345 PF07721 TPR_4: Tetratricopept 54.3 15 0.00032 25.5 2.8 23 88-110 3-25 (26)
346 PF07079 DUF1347: Protein of u 54.1 3.6E+02 0.0078 32.4 15.2 133 16-154 383-526 (549)
347 PF07079 DUF1347: Protein of u 52.2 61 0.0013 38.5 8.8 55 16-71 466-520 (549)
348 PF07721 TPR_4: Tetratricopept 51.8 17 0.00036 25.3 2.7 24 47-70 2-25 (26)
349 PF04762 IKI3: IKI3 family; I 51.2 3E+02 0.0066 36.3 16.0 212 9-256 689-926 (928)
350 COG3947 Response regulator con 51.0 51 0.0011 37.1 7.5 59 89-147 282-340 (361)
351 PF11817 Foie-gras_1: Foie gra 50.8 1.2E+02 0.0026 33.3 10.7 56 91-146 183-244 (247)
352 PF10602 RPN7: 26S proteasome 50.5 2.8E+02 0.006 28.9 12.8 62 87-148 37-101 (177)
353 PF09797 NatB_MDM20: N-acetylt 49.7 1.1E+02 0.0024 35.4 10.8 47 25-71 196-242 (365)
354 PF00244 14-3-3: 14-3-3 protei 49.7 3.8E+02 0.0083 29.3 16.2 49 212-260 149-198 (236)
355 PF10602 RPN7: 26S proteasome 48.0 83 0.0018 32.8 8.5 24 125-148 41-64 (177)
356 COG0790 FOG: TPR repeat, SEL1 47.6 4.2E+02 0.0092 29.2 15.1 95 26-130 91-197 (292)
357 PF04190 DUF410: Protein of un 46.7 2.4E+02 0.0052 31.3 12.3 103 25-142 3-112 (260)
358 KOG0890 Protein kinase of the 46.6 1.2E+03 0.025 34.0 21.6 65 194-261 1668-1732(2382)
359 PF07219 HemY_N: HemY protein 45.8 65 0.0014 30.6 6.7 46 16-61 63-108 (108)
360 COG2912 Uncharacterized conser 45.7 49 0.0011 36.9 6.5 65 91-155 186-250 (269)
361 PF11846 DUF3366: Domain of un 45.3 82 0.0018 32.9 8.1 54 105-159 130-183 (193)
362 COG3629 DnrI DNA-binding trans 44.9 2.4E+02 0.0052 31.8 11.8 62 48-115 155-216 (280)
363 KOG2063 Vacuolar assembly/sort 43.7 2.7E+02 0.0058 36.3 13.3 56 17-72 312-372 (877)
364 PF13041 PPR_2: PPR repeat fam 42.6 24 0.00052 28.2 2.8 39 510-548 6-44 (50)
365 KOG2114 Vacuolar assembly/sort 41.9 4.3E+02 0.0094 34.0 14.2 78 196-279 368-445 (933)
366 KOG4814 Uncharacterized conser 41.5 1.6E+02 0.0035 36.5 10.2 93 16-114 358-456 (872)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 41.4 2.8E+02 0.0061 27.2 10.6 95 14-113 27-126 (126)
368 PF07720 TPR_3: Tetratricopept 41.3 80 0.0017 24.1 5.2 31 234-264 4-36 (36)
369 PF10607 CLTH: CTLH/CRA C-term 41.1 84 0.0018 31.1 7.0 57 16-72 5-66 (145)
370 PF04840 Vps16_C: Vps16, C-ter 40.5 2.6E+02 0.0056 32.1 11.6 104 18-144 183-286 (319)
371 PF10516 SHNi-TPR: SHNi-TPR; 40.4 51 0.0011 25.6 4.0 29 87-115 2-30 (38)
372 KOG2063 Vacuolar assembly/sort 39.6 1E+03 0.022 31.3 21.1 48 22-73 484-531 (877)
373 PHA02537 M terminase endonucle 38.5 1.6E+02 0.0035 32.2 9.0 95 22-118 93-210 (230)
374 PF12854 PPR_1: PPR repeat 38.0 65 0.0014 23.9 4.2 28 84-111 5-32 (34)
375 COG3947 Response regulator con 37.6 1.2E+02 0.0025 34.4 7.7 31 125-155 284-314 (361)
376 PF13041 PPR_2: PPR repeat fam 37.5 1.1E+02 0.0023 24.4 5.9 31 85-115 2-32 (50)
377 KOG1920 IkappaB kinase complex 36.2 1.2E+03 0.027 31.3 18.6 20 172-191 994-1013(1265)
378 PRK12798 chemotaxis protein; R 35.7 8.3E+02 0.018 29.1 24.0 223 35-268 100-334 (421)
379 COG4455 ImpE Protein of avirul 35.6 1.6E+02 0.0035 32.0 8.1 59 55-119 10-68 (273)
380 KOG1258 mRNA processing protei 35.5 9.6E+02 0.021 29.8 24.2 115 29-149 62-180 (577)
381 COG4941 Predicted RNA polymera 34.6 1.5E+02 0.0033 34.1 8.2 91 26-121 310-400 (415)
382 PRK11619 lytic murein transgly 33.2 1.1E+03 0.024 29.8 24.4 59 200-259 316-374 (644)
383 KOG2041 WD40 repeat protein [G 32.1 9.8E+02 0.021 30.4 14.7 30 227-256 848-877 (1189)
384 KOG2114 Vacuolar assembly/sort 32.1 1.3E+03 0.027 30.1 20.2 169 22-222 344-516 (933)
385 COG0790 FOG: TPR repeat, SEL1 31.4 7.4E+02 0.016 27.2 23.5 82 24-115 53-142 (292)
386 PRK15490 Vi polysaccharide bio 31.2 2.2E+02 0.0047 35.4 9.4 84 53-144 15-98 (578)
387 KOG2280 Vacuolar assembly/sort 30.4 3.3E+02 0.0071 34.6 10.6 105 18-144 690-794 (829)
388 KOG2066 Vacuolar assembly/sort 29.8 5.6E+02 0.012 32.8 12.5 162 22-222 366-531 (846)
389 PF13934 ELYS: Nuclear pore co 29.4 4.1E+02 0.0088 28.9 10.4 83 47-141 79-161 (226)
390 KOG0546 HSP90 co-chaperone CPR 29.3 59 0.0013 37.5 4.0 116 21-142 231-365 (372)
391 PRK11619 lytic murein transgly 28.8 5.5E+02 0.012 32.5 12.7 114 14-144 35-153 (644)
392 KOG2422 Uncharacterized conser 28.8 1.2E+03 0.027 29.0 16.2 172 81-279 279-464 (665)
393 cd02679 MIT_spastin MIT: domai 28.4 1E+02 0.0022 28.0 4.6 43 26-83 3-45 (79)
394 KOG3783 Uncharacterized conser 28.2 1.2E+03 0.026 28.7 20.2 95 29-128 250-344 (546)
395 PF09205 DUF1955: Domain of un 28.2 3.9E+02 0.0085 27.0 8.8 66 195-261 85-150 (161)
396 PF07163 Pex26: Pex26 protein; 27.5 6.2E+02 0.014 28.6 11.2 90 56-147 45-145 (309)
397 PF01535 PPR: PPR repeat; Int 27.0 86 0.0019 21.6 3.2 26 89-114 3-28 (31)
398 PF14863 Alkyl_sulf_dimr: Alky 26.7 3.2E+02 0.007 27.5 8.3 48 85-132 69-116 (141)
399 KOG1538 Uncharacterized conser 26.4 1.4E+03 0.03 28.9 18.2 23 49-71 635-657 (1081)
400 KOG0529 Protein geranylgeranyl 26.1 3.6E+02 0.0078 31.9 9.5 95 24-124 87-187 (421)
401 KOG0276 Vesicle coat complex C 25.2 2.6E+02 0.0056 34.6 8.4 69 54-141 645-713 (794)
402 TIGR00756 PPR pentatricopeptid 25.0 72 0.0016 22.4 2.6 30 512-541 5-34 (35)
403 TIGR02710 CRISPR-associated pr 24.8 9.1E+02 0.02 28.5 12.7 56 16-71 134-196 (380)
404 COG5107 RNA14 Pre-mRNA 3'-end 24.6 1.3E+03 0.028 27.9 19.4 226 106-390 288-537 (660)
405 PF10516 SHNi-TPR: SHNi-TPR; 24.4 1.4E+02 0.003 23.2 4.1 27 234-260 4-30 (38)
406 PF01402 RHH_1: Ribbon-helix-h 24.4 91 0.002 23.6 3.1 31 739-769 4-34 (39)
407 KOG3679 Predicted coiled-coil 24.4 3.4E+02 0.0075 31.2 8.7 30 356-385 530-564 (802)
408 COG5091 SGT1 Suppressor of G2 24.1 1.1E+02 0.0023 34.0 4.6 97 22-118 5-111 (368)
409 PRK15490 Vi polysaccharide bio 23.3 2.1E+02 0.0045 35.5 7.4 71 205-278 17-87 (578)
410 KOG1839 Uncharacterized protei 22.7 8.4E+02 0.018 33.1 12.9 99 15-113 935-1042(1236)
411 COG2015 Alkyl sulfatase and re 22.6 1.4E+02 0.0031 35.7 5.6 54 13-66 453-506 (655)
412 PF10255 Paf67: RNA polymerase 22.4 1.5E+02 0.0033 35.1 5.8 62 198-259 124-192 (404)
413 KOG3783 Uncharacterized conser 22.2 4.2E+02 0.0092 32.4 9.4 64 49-112 452-517 (546)
414 PF11817 Foie-gras_1: Foie gra 22.1 4E+02 0.0087 29.1 8.9 81 28-108 154-240 (247)
415 PF10255 Paf67: RNA polymerase 21.8 1.6E+02 0.0034 35.0 5.8 58 55-113 131-191 (404)
416 TIGR03504 FimV_Cterm FimV C-te 21.7 1.6E+02 0.0034 23.6 4.0 23 237-259 5-27 (44)
417 TIGR00756 PPR pentatricopeptid 21.3 1.7E+02 0.0037 20.4 4.0 26 89-114 3-28 (35)
418 TIGR03504 FimV_Cterm FimV C-te 20.8 1.7E+02 0.0036 23.5 4.0 24 91-114 4-27 (44)
No 1
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-134 Score=1178.81 Aligned_cols=923 Identities=30% Similarity=0.380 Sum_probs=830.8
Q ss_pred ccCCCCCchHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC
Q 001799 4 KFGLAGGIPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL 83 (1011)
Q Consensus 4 ~~~~~~~v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P 83 (1011)
++|++++++|||+|||||+++.+|||+|++.++++++++||.++|+++||+++.|+|+.+||..+++ +++. ..+
T Consensus 1 ~~g~~~a~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~-----~~~ 74 (932)
T KOG2053|consen 1 MSGAELAMSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYG-----LKG 74 (932)
T ss_pred CcchhhccHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhcc-----CCC
Confidence 4788999999999999999999999999999999999999999999999999999999999996654 4343 357
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001799 84 MDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSI 163 (1011)
Q Consensus 84 ~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl 163 (1011)
+|+.++..+..||++++++++|..+|+++++++|+ ++..++||++|+|.++|+++|+++++|+|.+|+++||||+++++
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 89999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCc---HHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHH-HHHHHH
Q 001799 164 QLQVLCGNG---GEKLLLLAEGLLKKHVASH-SLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVD-KLRMQG 238 (1011)
Q Consensus 164 ~Lq~~~~~~---a~klL~LAek~Lekai~~~-p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~-~l~l~a 238 (1011)
++|+..+++ ....+++|++|+++.+... ++++.+|+.+|..|+..+|+|+||++++...++...++... ......
T Consensus 154 ilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~ 233 (932)
T KOG2053|consen 154 ILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKL 233 (932)
T ss_pred HHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999876543 2367889999999999988 89999999999999999999999999998887665665443 334456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc-cCccccccCCCCCCCCCCcccccccCcchHhhhhcHHHHH
Q 001799 239 RLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE-DDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEAS 317 (1011)
Q Consensus 239 ~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~-~~~~w~~~~~~~~~~p~~~~~~~~~~l~~e~~~~~i~ea~ 317 (1011)
.++.++++|.+.++++.++++.++|||.. |.++.++ ....|+.++++.. . +...++.+.
T Consensus 234 dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~---~~~sv~klLe~~~~~~a~~~~---------s--------~~~~l~~~~ 293 (932)
T KOG2053|consen 234 DLLKLLNRWQELFELSSRLLEKGNDDYKI---YTDSVFKLLELLNKEPAEAAH---------S--------LSKSLDECI 293 (932)
T ss_pred HHHHHhcChHHHHHHHHHHHHhCCcchHH---HHHHHHHHHHhcccccchhhh---------h--------hhhhHHHHH
Confidence 89999999999999999999999999555 4444433 1223444332211 1 112355666
Q ss_pred HHHHHHHhccCCCCchhhHhhchhHHHHHhhhCCCCchHHHHHHHHHHHHcCCccccHHhHHHHHhcCCHHHHHHHHHHH
Q 001799 318 TSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSFGHLACFTSDVEDFLLVLSLDKKTELLERL 397 (1011)
Q Consensus 318 ~fi~~l~~~~~~~~~Rgp~LA~LEL~~r~~~~G~~d~~~l~~~l~~Y~~kfg~K~cCf~DLk~Yl~~L~~e~~~~~l~~l 397 (1011)
+++++.+.. ++||||||+||+.+|....|+ ..+.+..||++||+|||||.|+++|+..++++++..|+..+
T Consensus 294 ek~~~~i~~----~~Rgp~LA~lel~kr~~~~gd-----~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l 364 (932)
T KOG2053|consen 294 EKAQKNIGS----KSRGPYLARLELDKRYKLIGD-----SEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKL 364 (932)
T ss_pred HHHHHhhcc----cccCcHHHHHHHHHHhcccCC-----hHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHh
Confidence 666665533 799999999999998755564 56899999999999999999999999999999999999998
Q ss_pred HhccCCCCchhHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCcccccccccHHHHHHHHHH
Q 001799 398 KSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLV 477 (1011)
Q Consensus 398 ~~~~~~~~~~~~k~l~~~I~~~Kl~r~lg~~~~~~~~~~~~~~~~l~~~Y~~~l~l~~dl~~tE~qp~Del~LLAa~~Ll 477 (1011)
....+. ++.+.+.+++|+|+.+++|++|.+.++|.++..+.+++|...|++++++++++.|||.++||+|+++|+|.|+
T Consensus 365 ~~~~~~-~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Li 443 (932)
T KOG2053|consen 365 VLADDD-SSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLI 443 (932)
T ss_pred hccCCc-chhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHH
Confidence 765444 3467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhHhhcCCCchhHHHHHHHHHHHcCChHHHHHHHHhcchhhhhhhhhhhhhhhhhhccCCc
Q 001799 478 QLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQMLVSSLW 557 (1011)
Q Consensus 478 ~l~~~~~~~~~L~~Ai~LLE~~L~~SP~n~~lkLlLvrLY~~LGa~s~A~~~y~~LdvK~IQ~DTLghll~~rl~~s~~~ 557 (1011)
++|+++++..++++||++||+++++||||||+|+||+|||+++|+++.|.++|..|||||||+|||||++|+|+.++|.+
T Consensus 444 d~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~ 523 (932)
T KOG2053|consen 444 DLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRS 523 (932)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhhHhHHHHHHHHHhccCcccHHhHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCChhHHHHHHh
Q 001799 558 VESNNLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQLKQNANNIEEEESVLE 637 (1011)
Q Consensus 558 ~~~~~l~~~~L~fy~~~~~e~~d~i~~Af~~GsYsKI~efi~F~~RL~~S~~~~~~~vE~~rl~l~~~~~~~~~~~~~l~ 637 (1011)
..+.+.++++++||+++.+|+||+|+.||++|+||||+||+.|++||++|.|++.++||+++++++...++.++....++
T Consensus 524 ~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~ 603 (932)
T KOG2053|consen 524 SFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLE 603 (932)
T ss_pred hhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999998777777
Q ss_pred hhccCccccccccccCCCcccccccccCCCcCCCCCCCCCcCCCCCCCCCC-chhhhhHHHhhhHHHHHHhhhhhhHHHH
Q 001799 638 NLKCGVDFLELSNEIGSKSVTFNEDWQSRPWWTPTPDKNYLLGPFAGISYC-PKENLMKEREANILGVVERKSLLPRLIY 716 (1011)
Q Consensus 638 ~l~~~~~~~~l~~e~~~~~L~DNrD~~~~p~w~p~~~~~~~l~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1011)
++. .++..++|+|.+|+|||||++||+|+|.+.+ ...| |+|+.+.+++-+..+.+.+| |++++|+
T Consensus 604 ~~~----l~~~e~~I~w~~L~DNRDl~~~~~w~p~~e~---------~~~e~~k~s~kEe~~~l~~rSi~lr-Ll~~~i~ 669 (932)
T KOG2053|consen 604 SMK----LPPSEDRIQWVSLSDNRDLNAIPYWDPEDEN---------FAEELKKESFKEETEWLNLRSIFLR-LLRELII 669 (932)
T ss_pred ccc----cCcchhhcccccccccccccccccCCCcchh---------hHHhhhhcChHHHHHHHHHHHHHHH-HHHHHHH
Confidence 544 5666788999999999999999999999887 2334 56888888887777777777 8999999
Q ss_pred HHhhccccchhhhhhccCCcCCcchhhhHHHHHHHHHHHhCcchhhhhHHHhhcccCccchhhhchhhhhHHHHHHHHHh
Q 001799 717 LSIQTASACVKENFEVNGSICDPKVSSELKYLLDRYAKMLGFSLRDAVEVVSGVSSGLNSSEAFGADMVGWLNFAVFLNA 796 (1011)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1011)
++.++....+.+.+|.++ +..+..|++.++++|.+++|+|..++|++.+-.+.|++...-+++ ++||+|
T Consensus 670 l~h~~~~k~~~~salt~~---~mevl~el~~ll~~~t~~~~~~~~~liq~~~~~~~~~r~g~l~~s--------~~f~~~ 738 (932)
T KOG2053|consen 670 LAHPNGEKDLEKSALTAK---VMEVLRELELLLEQYTSVLIPSASFLIQFPLLESQGVRLGDLLNS--------LEFLMA 738 (932)
T ss_pred hcCCCCCcchHHHHHhcc---chHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhccccccccchhhh--------HHHHHH
Confidence 999999999999999888 889999999999999999999999999999999999987765555 999999
Q ss_pred hccCCccccccCCCCCCcchHHHHHHHHHHHHHhhhcCCcc-ccccCccHHHHHHHhccchhHHHHHHHHHHhhcCCCCc
Q 001799 797 WNLSSHEVVLPDVNGCRHSTWQVVNTLLKKCILEVRSMESL-VCYPQLDLSVLVQLVTEPLAWHTLVMQSCVRSSLPSGK 875 (1011)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1011)
|++..++. |++-.++++.|. ++++..- +.++-.++++.||-.++|+.||-..+++|.+.++|+++
T Consensus 739 ~~~lv~~~------------~~~s~~l~e~~~--v~t~i~t~l~s~~~~~~~~~q~~~~~~~w~~~~~~~k~~~sl~~~~ 804 (932)
T KOG2053|consen 739 VPLLVKDL------------WSVSHPLLELTK--VRTEIITDLISLLRIKDKEVQKEKLPLLWIVDGKLIKALQSLLSLY 804 (932)
T ss_pred HHHHHHHH------------HhccchHHHHHH--HHHHHHHHHHHHHHHHHHHhhhccCCchhhhhHHHHhhHHHHHHHH
Confidence 99998876 999999999998 3333333 44566789999999999999999999999999999999
Q ss_pred ccccCCCCC-CCCCcchhhHHHhHHhhhhHHHHHHHHHHhhhCCChhHHHHHHHHHHhhcCCCCCCchhHHhhhhhhhcc
Q 001799 876 KKKRSGSAD-HSTSPLSHDIRGSVQSTSGVVEEVAKWLGHHIKKSEDEKLDAIFSSLEANGRGEGPGQVFRLLGTLISSL 954 (1011)
Q Consensus 876 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1011)
+++|...++ +..|++++|+.++|+-.| .+.+..|.-.++++||..++..-+....+.+...+||+|..+++.+|+..
T Consensus 805 ~~l~~i~s~~L~~s~~~~av~~pvk~~~--~kk~~~~~~t~~~~~e~~~~~~el~~~~~~~~~n~~~~i~g~~~~~lal~ 882 (932)
T KOG2053|consen 805 VFLKNIFSDKLKVSSVPTAVKEPVKLKG--DKKASVQAYTKLKKPECGQVLQELDRKLAENLSNIKNSILGYLKSFLALE 882 (932)
T ss_pred HHHHHHHhhhhccccccccccchhhhhh--hhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHhhh
Confidence 999999999 778899999999999999 89999999999999999999999988888888889999999999999999
Q ss_pred chhhhhhhhhhhccCCChHHHHHHHhhhhhhHHHHHHHHhHHHHHHHHHHH
Q 001799 955 NEAELGDRISQAMKSWSPVDVARKFVAGQRAGLSAFLRICESKIKSLQALK 1005 (1011)
Q Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1011)
.+++.|.+|++++++ .++||.++.+.....+++||+++|++|++..+.++
T Consensus 883 ~E~~ids~i~~~l~~-~~~d~~~k~~~~~~~~~~e~~~l~e~k~~~~~~lk 932 (932)
T KOG2053|consen 883 LESMIDSSIGPELEG-AKADVEGKHNPSASRLLREFLNLCEDKHTTIKKLK 932 (932)
T ss_pred hhhccccccchhhhh-hhHhHhhhcchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999 99999999999999999999999999999988653
No 2
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=100.00 E-value=3.4e-61 Score=552.04 Aligned_cols=361 Identities=32% Similarity=0.519 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHhccCccccccCCCCCCCCCCcccccccCcchHhhhhcHHHHHHHHHHHHh--ccCCCCchhhHhhchhH
Q 001799 265 WECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHA--DTSVNLIRCPYLANLEI 342 (1011)
Q Consensus 265 w~~~~~yl~all~~~~~w~~~~~~~~~~p~~~~~~~~~~l~~e~~~~~i~ea~~fi~~l~~--~~~~~~~Rgp~LA~LEL 342 (1011)
|.+|..|+++.++.+. . ++.++++.++++.+.+ ...+++.|||+||+||+
T Consensus 1 W~~w~~~i~s~~~l~~------------------------~----~~~~~~~~~~~~~l~~~~~~~~~~~R~p~LA~lel 52 (365)
T PF09797_consen 1 WDVWKLLIDSAFELGK------------------------S----EEELEDVQEFLESLQAESSQSNPKSRGPYLARLEL 52 (365)
T ss_pred ChHHHHHHHHHHHhCC------------------------C----hhhHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHH
Confidence 8899999999988632 0 1124566677777664 34588999999999999
Q ss_pred HHHHhhhCCC-CchHHHHHHHHHHHHcCCccccHHhHHHHHhcCCHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHH
Q 001799 343 ERRKLLYGKN-NNDELMEAVLEYFLSFGHLACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKI 421 (1011)
Q Consensus 343 ~~r~~~~G~~-d~~~l~~~l~~Y~~kfg~K~cCf~DLk~Yl~~L~~e~~~~~l~~l~~~~~~~~~~~~k~l~~~I~~~Kl 421 (1011)
.+|+...|.. ...++.+.+.+||++||+|||||.||++|++.|+++++.+|++.+..........+.+.+.++||++|+
T Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~Y~~~f~~K~cCf~DL~~Y~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~in~~kl 132 (365)
T PF09797_consen 53 AKRLRERGDAPDEEDLLELLEEYFDKFGSKPCCFDDLKPYLESLDPEERKELLEKLLEKIEADSKEDIKQLIRHINALKL 132 (365)
T ss_pred HHHHHhccCCccchhHHHHHHHHHHHhCCCCEeHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Confidence 9998777765 567899999999999999999999999999999999999999999876554334577899999999999
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCcccccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHhh
Q 001799 422 QELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLT 501 (1011)
Q Consensus 422 ~r~lg~~~~~~~~~~~~~~~~l~~~Y~~~l~l~~dl~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~L~~Ai~LLE~~L~ 501 (1011)
+|++|.+..++.++..++++++++.|+++++++.+++ ||.+|+|||+++|+++|+++|..+++.+++++|+.|||++++
T Consensus 133 ~r~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~l~-te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~ 211 (365)
T PF09797_consen 133 SRFLGLHFSLSSESLLDLAQELLKLYQESLSLGKDLK-TESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALK 211 (365)
T ss_pred HHHhcccccCChhhHHHHHHHHHHHHHhhCccccccc-cccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 9999999999988888899999999999999997766 999999999999999999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHHHcCChHHHHHHHHhcchhhhhhhhhhhhhhhhhhccCCchhhH-HHHHHHHHHHHHhhHhHHH
Q 001799 502 VRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHILPQMLVSSLWVESN-NLLRDYLRFMDDHLRESAD 580 (1011)
Q Consensus 502 ~SP~n~~lkLlLvrLY~~LGa~s~A~~~y~~LdvK~IQ~DTLghll~~rl~~s~~~~~~~-~l~~~~L~fy~~~~~e~~d 580 (1011)
+||+||++|+||||||++||++++|.++|..||||+||+|||||++++|+++.|.++... +.+...++||.++.+++++
T Consensus 212 ~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~fy~~~~~~~~e 291 (365)
T PF09797_consen 212 KSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALKFYDNSEKETPE 291 (365)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998866666655 8899999999999999999
Q ss_pred HHHHHHhccCcccHHhHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCChhHHHHHHhhhccCccccccccccCCCccccc
Q 001799 581 LTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQLKQNANNIEEEESVLENLKCGVDFLELSNEIGSKSVTFN 660 (1011)
Q Consensus 581 ~i~~Af~~GsYsKI~efi~F~~RL~~S~~~~~~~vE~~rl~l~~~~~~~~~~~~~l~~l~~~~~~~~l~~e~~~~~L~DN 660 (1011)
+|+.||++|+|+||+||++|++||++|++++++.+|.+|++++.+.+....++.+.+ +..+.++|++++||
T Consensus 292 ~i~~af~~gsysKi~ef~~F~~rL~~S~~~~~~~~E~~~l~~~~~~~~~~~~~~l~~---------~~~~~~~~~~l~DN 362 (365)
T PF09797_consen 292 FIIKAFENGSYSKIEEFIEFRERLRNSLQRAMSRIERLRLSRLLGDKRFEELEYLVQ---------EDEDRIDWKTLSDN 362 (365)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHhh---------hhhcccccccCccC
Confidence 999999999999999999999999999999999999999999987766554344433 12344679999999
Q ss_pred ccc
Q 001799 661 EDW 663 (1011)
Q Consensus 661 rD~ 663 (1011)
|||
T Consensus 363 RDf 365 (365)
T PF09797_consen 363 RDF 365 (365)
T ss_pred CCC
Confidence 998
No 3
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.97 E-value=3e-28 Score=279.33 Aligned_cols=503 Identities=19% Similarity=0.254 Sum_probs=369.3
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
.|+.+.+.++.+|||+.+++++++|+++|.|++.+++||+.|..+|+.+||...+..++. . ++....+|+.+|.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr---~---d~~S~vCwHv~gl 83 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR---N---DLKSHVCWHVLGL 83 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc---c---CcccchhHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999998743 3 4566699999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGE 174 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~ 174 (1011)
+++..++|++|+++|++|++.+|+|.++++.+....++.+|++....+=.+++...|..+. +|..+++.. ...++ ..
T Consensus 84 ~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra-~w~~~Avs~-~L~g~-y~ 160 (700)
T KOG1156|consen 84 LQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA-SWIGFAVAQ-HLLGE-YK 160 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH-HHHHHHHHH-HHHHH-HH
Confidence 9999999999999999999999999999999999999999999888877788899999886 686665532 12221 12
Q ss_pred HHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHH
Q 001799 175 KLLLLAEGLLKKH---VASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAA 251 (1011)
Q Consensus 175 klL~LAek~Leka---i~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~ 251 (1011)
..++..+...+.. +....++..+.++...+++.+.|.+++|++.+...-.. +.+.......+|.++.++|++++|.
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHH
Confidence 2222222222211 11111234456666779999999999999999877443 4455666677899999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhccCccccccCCCCCCCCCCcccccccCcchHhhhhcHHHHHHHHHHHHhccCCCC
Q 001799 252 QIYKKILELSPDDWECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNL 331 (1011)
Q Consensus 252 ~~~~kaL~~nPDdw~~~~~yl~all~~~~~w~~~~~~~~~~p~~~~~~~~~~l~~e~~~~~i~ea~~fi~~l~~~~~~~~ 331 (1011)
.+|+.+|..||||++++..+..++..... ..+....++..+ ...+
T Consensus 240 ~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d-------------------------------~~~~lk~ly~~l----s~~y 284 (700)
T KOG1156|consen 240 KVYRRLLERNPDNLDYYEGLEKALGKIKD-------------------------------MLEALKALYAIL----SEKY 284 (700)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHhh-------------------------------hHHHHHHHHHHH----hhcC
Confidence 99999999999999999999988862110 011222444444 3458
Q ss_pred chhhHhhchhHHHHHhhhCCCCchHHHHHHHHHHHHcCCc--cccHHhHHHHHhcCCHHHHHHHHHHHHhccCCCCchhH
Q 001799 332 IRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSFGHL--ACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESI 409 (1011)
Q Consensus 332 ~Rgp~LA~LEL~~r~~~~G~~d~~~l~~~l~~Y~~kfg~K--~cCf~DLk~Yl~~L~~e~~~~~l~~l~~~~~~~~~~~~ 409 (1011)
+|..-+-|+.+.. ..| +++.+.+..|....-.| |..|.||+++.+ .|. +..|++++...
T Consensus 285 ~r~e~p~Rlplsv---l~~----eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk--~p~-k~~~le~Lvt~--------- 345 (700)
T KOG1156|consen 285 PRHECPRRLPLSV---LNG----EELKEIVDKYLRPLLSKGVPSVFKDLRSLYK--DPE-KVAFLEKLVTS--------- 345 (700)
T ss_pred cccccchhccHHH---hCc----chhHHHHHHHHHHHhhcCCCchhhhhHHHHh--chh-HhHHHHHHHHH---------
Confidence 8988888898886 445 47889999999999999 999999999986 222 33455544321
Q ss_pred HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCcccccccccHHHHHHHHHHHHHHhcCChHHH
Q 001799 410 KELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIHGEELLSMASNVLVQLFWRTSNYGYF 489 (1011)
Q Consensus 410 k~l~~~I~~~Kl~r~lg~~~~~~~~~~~~~~~~l~~~Y~~~l~l~~dl~~tE~qp~Del~LLAa~~Ll~l~~~~~~~~~L 489 (1011)
.+..++....++..+. +.--+||- +++...+|.++|-. .+.+
T Consensus 346 -----------y~~~L~~~~~f~~~D~-----------------~~~E~Ptt-------llWt~y~laqh~D~---~g~~ 387 (700)
T KOG1156|consen 346 -----------YQHSLSGTGMFNFLDD-----------------GKQEPPTT-------LLWTLYFLAQHYDK---LGDY 387 (700)
T ss_pred -----------HHhhcccccCCCcccc-----------------cccCCchH-------HHHHHHHHHHHHHH---cccH
Confidence 1111111111111110 00001211 35555677777643 4556
Q ss_pred HHHHHHHHhHhhcCCCchhHHHHHHHHHHHcCChHHHHHHHHh---cchhhhhh------------------hhhhhhhh
Q 001799 490 MEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKA---LDVKNILM------------------ETVSHHIL 548 (1011)
Q Consensus 490 ~~Ai~LLE~~L~~SP~n~~lkLlLvrLY~~LGa~s~A~~~y~~---LdvK~IQ~------------------DTLghll~ 548 (1011)
..|...|+.++.++|+-+++-++.+|||.+.|..+.|..++.. ||.-+.-. .+++- |
T Consensus 388 ~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~sk--F 465 (700)
T KOG1156|consen 388 EVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSK--F 465 (700)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHH--h
Confidence 8899999999999999999999999999999999999998843 54433311 22222 4
Q ss_pred hhhhccCCchhhHHH-------------------------HHHHHHHHHHhhHhHHHHHHHHHhccCcccHHhHHHHHHH
Q 001799 549 PQMLVSSLWVESNNL-------------------------LRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKER 603 (1011)
Q Consensus 549 ~rl~~s~~~~~~~~l-------------------------~~~~L~fy~~~~~e~~d~i~~Af~~GsYsKI~efi~F~~R 603 (1011)
+|--. +...++.++ ++.+-+||.....+.-||.+.|++.|++....|+++|.++
T Consensus 466 Tr~~~-~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~ 544 (700)
T KOG1156|consen 466 TREGF-GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDN 544 (700)
T ss_pred hhccc-chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44311 111111110 3333456777789999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHH
Q 001799 604 LQRSSQYLVARVESSILQL 622 (1011)
Q Consensus 604 L~~S~~~~~~~vE~~rl~l 622 (1011)
|..+..+.-++.....+-+
T Consensus 545 L~~~p~y~~Aa~~Ai~iYl 563 (700)
T KOG1156|consen 545 LRSSPYYLRAAKGAIEIYL 563 (700)
T ss_pred hccChHHHHHHHHHHHHHH
Confidence 9999999988888877754
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=1.1e-16 Score=200.81 Aligned_cols=240 Identities=18% Similarity=0.083 Sum_probs=113.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
++..|++++|++.+++.++.+|+++.++...|.++.+.|++++|...++++++. .|.+..++..++.++...|+
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~ 514 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI------EPDFFPAAANLARIDIQEGN 514 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------CCCcHHHHHHHHHHHHHCCC
Confidence 344444444444444444444444444444444444444444444444444332 24444444444444444444
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAE 181 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAe 181 (1011)
+++|...|+++++.+|++.+++..++..+.+.|++.+|...+.++.+..|.+.. .|..++.++. ..+ . +..|.
T Consensus 515 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~-~~~-~----~~~A~ 587 (899)
T TIGR02917 515 PDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE-PALALAQYYL-GKG-Q----LKKAL 587 (899)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh-HHHHHHHHHH-HCC-C----HHHHH
Confidence 444444444444444444444444444444444444444444444444444332 1111111110 011 1 12223
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 182 GLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS 261 (1011)
Q Consensus 182 k~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~n 261 (1011)
..++++....| .+.+.+..++.++...|++++|++.++..+.. .|.++..+...|.++...|++++|...|+++++.+
T Consensus 588 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-QPDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 33333333344 44555555566666666666666666655432 34444445555556666666666666666666666
Q ss_pred CCCHHHHHHHHHHHh
Q 001799 262 PDDWECFLHYLGCLL 276 (1011)
Q Consensus 262 PDdw~~~~~yl~all 276 (1011)
|++...+..+...+.
T Consensus 666 ~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 666 PDNTEAQIGLAQLLL 680 (899)
T ss_pred CCCHHHHHHHHHHHH
Confidence 666655555554443
No 5
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=2.3e-16 Score=197.89 Aligned_cols=257 Identities=18% Similarity=0.146 Sum_probs=189.5
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhh------------
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQ------------ 78 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~------------ 78 (1011)
....++.....++..|+++.|+..++++++++|+++.++..+|.++.+.|++++|+..++++++.-+.
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHH
Confidence 33557888889999999999999999999999999999999999999999999999999987653110
Q ss_pred -----------------CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 001799 79 -----------------NDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQ 141 (1011)
Q Consensus 79 -----------------d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq 141 (1011)
....|....++..+|.++...|++++|...|++++..+|++.+++..++..+...|++.+|.+
T Consensus 101 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (899)
T TIGR02917 101 LLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180 (899)
T ss_pred HHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHH
Confidence 011234455667777788888888888888888888888887777788888888888888888
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHh
Q 001799 142 TAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSG 221 (1011)
Q Consensus 142 ~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~ 221 (1011)
...++.+..|++.. .|...+.++.. .++ +..|...+++++..+| .+...+..++.++...|++++|...++.
T Consensus 181 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~g~-----~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 181 LIDEVLTADPGNVD-ALLLKGDLLLS-LGN-----IELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred HHHHHHHhCCCChH-HHHHHHHHHHh-cCC-----HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87777777777654 34444433321 111 3344555555555666 6677777778888888888888888887
Q ss_pred hhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001799 222 TLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 276 (1011)
Q Consensus 222 ~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all 276 (1011)
.+.. .|..+..++.+|.++...|++++|...++++++.+|++...+..+..++.
T Consensus 253 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 306 (899)
T TIGR02917 253 LLKK-APNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEY 306 (899)
T ss_pred HHHh-CCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 7643 55555566677777778888888888888888888887666554444443
No 6
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.80 E-value=8.3e-17 Score=190.70 Aligned_cols=335 Identities=19% Similarity=0.253 Sum_probs=249.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001799 194 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLG 273 (1011)
Q Consensus 194 ~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~ 273 (1011)
+.+|.+++..+|+..+|++++|+++|+..... +.+....+..+|.++.++|++++|...|+.+|+.||||+.++..|..
T Consensus 2 E~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 2 EHSELLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEE 80 (517)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 56778888889999999999999999998654 78888889999999999999999999999999999999999999988
Q ss_pred HHhccCccccccCCCCCCCCCCcccccccCcchHhhhhcHHHHHHHHHHHHhccCCCCchhhHhhchhHHHHHhhhCCCC
Q 001799 274 CLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNN 353 (1011)
Q Consensus 274 all~~~~~w~~~~~~~~~~p~~~~~~~~~~l~~e~~~~~i~ea~~fi~~l~~~~~~~~~Rgp~LA~LEL~~r~~~~G~~d 353 (1011)
++.-... +++ +..+...++++++.+. ++|+...-++.|.+ ..|
T Consensus 81 ~~g~~~~-----------------------~~~----~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~---~~g--- 123 (517)
T PF12569_consen 81 ALGLQLQ-----------------------LSD----EDVEKLLELYDELAEK----YPRSDAPRRLPLDF---LEG--- 123 (517)
T ss_pred HHhhhcc-----------------------ccc----ccHHHHHHHHHHHHHh----CccccchhHhhccc---CCH---
Confidence 7743210 001 1245677888888653 68888888888876 333
Q ss_pred chHHHHHHHHHHHHcCCc--cccHHhHHHHHhcCCHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHhccccCC
Q 001799 354 NDELMEAVLEYFLSFGHL--ACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKL 431 (1011)
Q Consensus 354 ~~~l~~~l~~Y~~kfg~K--~cCf~DLk~Yl~~L~~e~~~~~l~~l~~~~~~~~~~~~k~l~~~I~~~Kl~r~lg~~~~~ 431 (1011)
++|...+..|+..+-.| |+.|.|||+... ++ .+...
T Consensus 124 -~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~--d~-~K~~~-------------------------------------- 161 (517)
T PF12569_consen 124 -DEFKERLDEYLRPQLRKGVPSLFSNLKPLYK--DP-EKAAI-------------------------------------- 161 (517)
T ss_pred -HHHHHHHHHHHHHHHhcCCchHHHHHHHHHc--Ch-hHHHH--------------------------------------
Confidence 57999999999999999 999999999875 22 22222
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCCCCCCcc--cccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHhhcCCCchhH
Q 001799 432 LVDELERSAVQMSEMYCKSLPLSKDLDPQ--ESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQY 509 (1011)
Q Consensus 432 ~~~~~~~~~~~l~~~Y~~~l~l~~dl~~t--E~qp~Del~LLAa~~Ll~l~~~~~~~~~L~~Ai~LLE~~L~~SP~n~~l 509 (1011)
+.+++..|...+.-....+.. +........+++..+|.++|...++. .+|+..++.++.++|+.+++
T Consensus 162 --------i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~---~~Al~~Id~aI~htPt~~el 230 (517)
T PF12569_consen 162 --------IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDY---EKALEYIDKAIEHTPTLVEL 230 (517)
T ss_pred --------HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCcHHH
Confidence 233333343332221111110 01111233566778888888665554 69999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHH---hcchhhhhh------------------hhhhhhhhhhhhccCCchhhH-------
Q 001799 510 KVLLVHLYSHLGALPLAYEWYK---ALDVKNILM------------------ETVSHHILPQMLVSSLWVESN------- 561 (1011)
Q Consensus 510 kLlLvrLY~~LGa~s~A~~~y~---~LdvK~IQ~------------------DTLghll~~rl~~s~~~~~~~------- 561 (1011)
.++.+|||.+.|.+..|.+.++ .||...-.. .+++- |+|--..| ..++.
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~--Ftr~~~~~-~~~L~~mQc~Wf 307 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL--FTREDVDP-LSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh--hcCCCCCc-ccCHHHHHHHHH
Confidence 9999999999999999999874 455544322 23333 44432111 11111
Q ss_pred ------------------HHHHHHHHHHHHhhHhHHHHHHHHHhccCcccHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001799 562 ------------------NLLRDYLRFMDDHLRESADLTFLAYRHRNYSKVIEFVQFKERLQRSSQYLVARVESSILQL 622 (1011)
Q Consensus 562 ------------------~l~~~~L~fy~~~~~e~~d~i~~Af~~GsYsKI~efi~F~~RL~~S~~~~~~~vE~~rl~l 622 (1011)
.-++.+.++|.+...|.-||...+++.|++....+|+++.++|..+-.|.-+..-..++-+
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl 386 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYL 386 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 1256667788888999999999999999999999999999999999999888887777754
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=8.2e-15 Score=180.00 Aligned_cols=405 Identities=16% Similarity=0.094 Sum_probs=257.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
.....++..|+|.+|+..++++++..|+ +.++..+|.++.++|++++|+..|.+++++ .|.+..++..+|.+|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALEL------DPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHH
Confidence 3456788999999999999999999996 678899999999999999999999999775 688999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC------
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCG------ 170 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~------ 170 (1011)
..+|++++|+..|..+...+|.+......+...+.. +.+...+....+..|.+.. .|..++.+++....
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLP-SVTFVGNYLQSFRPKPRPAG 279 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHccCCcchhh
Confidence 999999999999998888777654433333333222 2233344455555554321 11111122111000
Q ss_pred ------------Cc------------HHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Q 001799 171 ------------NG------------GEKLLLLAEGLLKKHVASHSL--HEPEALIVYISILEQQSKYGDALEILSGTLG 224 (1011)
Q Consensus 171 ------------~~------------a~klL~LAek~Lekai~~~p~--~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~ 224 (1011)
.. ...-+..|.+.+++++..... .....+..++.++..+|++++|+..++.++.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00 001234555666666654321 4556788889999999999999999999985
Q ss_pred ccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccccccCCCCCCCCCCcccccccCc
Q 001799 225 SLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHL 304 (1011)
Q Consensus 225 ~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~~~~w~~~~~~~~~~p~~~~~~~~~~l 304 (1011)
. .|.....+..+|.++..+|++++|...|+++++.+|++..+|..+....+..+
T Consensus 360 l-~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g------------------------- 413 (615)
T TIGR00990 360 L-DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG------------------------- 413 (615)
T ss_pred c-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------------------------
Confidence 4 67777778888999999999999999999999999999999998877766543
Q ss_pred chHhhhhcHHHHHHHHHHHHhccCCCCchhhHhhchhHHHHHhhhCCCCchHHHHHHHHHHHHcCCccccHHhHHHHHhc
Q 001799 305 TDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSFGHLACFTSDVEDFLLV 384 (1011)
Q Consensus 305 ~~e~~~~~i~ea~~fi~~l~~~~~~~~~Rgp~LA~LEL~~r~~~~G~~d~~~l~~~l~~Y~~kfg~K~cCf~DLk~Yl~~ 384 (1011)
..++|...+++.++...........||.+.. ..|. .++....+....+.+ |-. .++
T Consensus 414 -------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~-----~~g~--~~eA~~~~~~al~~~---P~~-~~~------ 469 (615)
T TIGR00990 414 -------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY-----KEGS--IASSMATFRRCKKNF---PEA-PDV------ 469 (615)
T ss_pred -------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHH-----HCCC--HHHHHHHHHHHHHhC---CCC-hHH------
Confidence 2446777777665431111111111121111 1121 011111111111111 000 000
Q ss_pred CCHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCcccccc
Q 001799 385 LSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQESIH 464 (1011)
Q Consensus 385 L~~e~~~~~l~~l~~~~~~~~~~~~k~l~~~I~~~Kl~r~lg~~~~~~~~~~~~~~~~l~~~Y~~~l~l~~dl~~tE~qp 464 (1011)
...++. +..-.| ...+.++.|.+++.+.++..+..
T Consensus 470 ------------------------~~~lg~------~~~~~g------------~~~~A~~~~~~Al~l~p~~~~~~--- 504 (615)
T TIGR00990 470 ------------------------YNYYGE------LLLDQN------------KFDEAIEKFDTAIELEKETKPMY--- 504 (615)
T ss_pred ------------------------HHHHHH------HHHHcc------------CHHHHHHHHHHHHhcCCcccccc---
Confidence 000000 000011 12445566777666543322211
Q ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHhhcCCCchhHHHHHHHHHHHcCChHHHHHHHHhc
Q 001799 465 GEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 533 (1011)
Q Consensus 465 ~Del~LLAa~~Ll~l~~~~~~~~~L~~Ai~LLE~~L~~SP~n~~lkLlLvrLY~~LGa~s~A~~~y~~L 533 (1011)
.....+. +....++. ..+.+.+|+.+++.++..+|.+......++++|..+|.+..|...|+..
T Consensus 505 -~~~~~l~-~~a~~~~~---~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 505 -MNVLPLI-NKALALFQ---WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred -ccHHHHH-HHHHHHHH---HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 0111111 11111221 2357789999999999999999999999999999999999999999763
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.77 E-value=9.6e-15 Score=191.14 Aligned_cols=244 Identities=16% Similarity=0.089 Sum_probs=192.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH-----------
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL----------- 87 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~----------- 87 (1011)
...++..|++.+|+..++++++.+|+++.++...|.++.+.|++++|+..++++++. .|.+..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~------~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL------DPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCccchhHHHHHHHhh
Confidence 345678999999999999999999999999999999999999999999999998765 233321
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 001799 88 ---TLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQ 164 (1011)
Q Consensus 88 ---al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~ 164 (1011)
.+..+|.++...|++++|+..|+++++.+|++..++..++.+|...|++.+|.+.+.++.+.+|++.. .|..+..+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~-a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN-AVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 12345778899999999999999999999999999999999999999999999999999999999875 33333333
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHH---Hh--cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHH
Q 001799 165 LQVLCGNGGEKLLLLAEGLLKKH---VA--SHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGR 239 (1011)
Q Consensus 165 Lq~~~~~~a~klL~LAek~Leka---i~--~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ 239 (1011)
++... .++++....++.... .. ... -..+.+...+.++..+|++++|++.+++++.. .|+++..++.+|.
T Consensus 429 ~~~~~---~~~A~~~l~~l~~~~~~~~~~~~~~-l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~ 503 (1157)
T PRK11447 429 YRQQS---PEKALAFIASLSASQRRSIDDIERS-LQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQ 503 (1157)
T ss_pred HHhcC---HHHHHHHHHhCCHHHHHHHHHHHHH-hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 32221 222222221111100 00 000 11234567789999999999999999999864 7888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 240 LLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 240 ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
++.+.|++++|...++++++.+|++...+..+...
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999999999999999999999999988765533
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=8.9e-15 Score=180.51 Aligned_cols=245 Identities=13% Similarity=0.064 Sum_probs=188.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
-|...+..|++.+|+.+++.++..+|+++.++.+.+.++...|++++|+..++++++. .|.++.++..+|.++.
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~------~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV------NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999999999999998775 6899999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL 177 (1011)
..|++++|+..|+++++.+|++.+++..++.++...|++.+|...+.++.+..|+++.. +.....+++ .++ +
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a-~~~~~~l~~--~g~-----~ 193 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM-IATCLSFLN--KSR-----L 193 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH-HHHHHHHHH--cCC-----H
Confidence 99999999999999999999999999999999999999999999999999999987642 211222221 111 2
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHH----HHHH
Q 001799 178 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTA----AAQI 253 (1011)
Q Consensus 178 ~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~ee----A~~~ 253 (1011)
..|...+++.++..|........+.+.++..+|++++|+..++..+.. .|+.+..++.+|.++...|++++ |...
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-GLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 223333333333343233333444566677777777777777777643 56666666667777777777764 6777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 254 YKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 254 ~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
|+++++.+|++..++..+...+..
T Consensus 273 ~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 273 WRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHH
Confidence 777777777777777766655554
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=3.6e-15 Score=170.40 Aligned_cols=436 Identities=16% Similarity=0.114 Sum_probs=296.4
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
.++.-....++.|+|++|++.|..+-..+|.+..-+.+.+.++++..+.+...+-...++.. .|.-.+++..+|
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~------~~q~ae~ysn~a 123 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK------NPQGAEAYSNLA 123 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc------cchHHHHHHHHH
Confidence 46677778899999999999999999999999999999999999999999988776666443 678889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--------
Q 001799 94 IVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQL-------- 165 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~L-------- 165 (1011)
.++++.|++++|+..|+.++++.|++.+++.+++.++++.|+...|.+.+...++.+|..-- +..-++.++
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c-a~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC-ARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh-hhcchhHHHHhhcccch
Confidence 99999999999999999999999999999999999999999999999999999999996421 112222222
Q ss_pred ------HHhcC-Cc-------------HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Q 001799 166 ------QVLCG-NG-------------GEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGS 225 (1011)
Q Consensus 166 ------q~~~~-~~-------------a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~ 225 (1011)
.+... +. ...-+-+|....++++..+| ...++.+.++.||.+.+.|++|+..+.+++..
T Consensus 203 a~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 203 AKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred hHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 11100 00 00113477778888899999 88999999999999999999999999999743
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccccccCCCCCCCCCCcccccccCcc
Q 001799 226 LLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLT 305 (1011)
Q Consensus 226 ~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~~~~w~~~~~~~~~~p~~~~~~~~~~l~ 305 (1011)
.|......-..|-+|.++|..+-|++.|+++|+..|.-..+|..+..++-+.+
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G-------------------------- 334 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKG-------------------------- 334 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhcc--------------------------
Confidence 67766667777888999999999999999999999999999999887775533
Q ss_pred hHhhhhcHHHHHHHHHHHHhccCCCCchhhHhhchhHHHHHhhhCCCCchHHHHHHHHHHHHcCCcccc---HHhHHHHH
Q 001799 306 DEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSFGHLACF---TSDVEDFL 382 (1011)
Q Consensus 306 ~e~~~~~i~ea~~fi~~l~~~~~~~~~Rgp~LA~LEL~~r~~~~G~~d~~~l~~~l~~Y~~kfg~K~cC---f~DLk~Yl 382 (1011)
++.++...+++-+.-.... .-.+..|--..| ..| .+.++..-|...|.--|-| +..|-..+
T Consensus 335 ------~V~ea~~cYnkaL~l~p~h---adam~NLgni~~--E~~-----~~e~A~~ly~~al~v~p~~aaa~nNLa~i~ 398 (966)
T KOG4626|consen 335 ------SVTEAVDCYNKALRLCPNH---ADAMNNLGNIYR--EQG-----KIEEATRLYLKALEVFPEFAAAHNNLASIY 398 (966)
T ss_pred ------chHHHHHHHHHHHHhCCcc---HHHHHHHHHHHH--Hhc-----cchHHHHHHHHHHhhChhhhhhhhhHHHHH
Confidence 2456666666543211111 112233332221 223 3456666666655444433 34444433
Q ss_pred hcCCHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCcccc
Q 001799 383 LVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQES 462 (1011)
Q Consensus 383 ~~L~~e~~~~~l~~l~~~~~~~~~~~~k~l~~~I~~~Kl~r~lg~~~~~~~~~~~~~~~~l~~~Y~~~l~l~~dl~~tE~ 462 (1011)
..-. ...+-+....+...+.+. -...+.- +|+. - .....+...++.|.++..+++..
T Consensus 399 kqqg--nl~~Ai~~YkealrI~P~-fAda~~N----------mGnt----~-ke~g~v~~A~q~y~rAI~~nPt~----- 455 (966)
T KOG4626|consen 399 KQQG--NLDDAIMCYKEALRIKPT-FADALSN----------MGNT----Y-KEMGDVSAAIQCYTRAIQINPTF----- 455 (966)
T ss_pred Hhcc--cHHHHHHHHHHHHhcCch-HHHHHHh----------cchH----H-HHhhhHHHHHHHHHHHHhcCcHH-----
Confidence 3111 111112122111111000 0001000 0110 0 11234677788888887766421
Q ss_pred cccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHhhcCCCchhHHHHHHHHHHHcCChHHHHHHHHhc
Q 001799 463 IHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKAL 533 (1011)
Q Consensus 463 qp~Del~LLAa~~Ll~l~~~~~~~~~L~~Ai~LLE~~L~~SP~n~~lkLlLvrLY~~LGa~s~A~~~y~~L 533 (1011)
.=|-+.|..+| +|.+++-+||.--+.+|+..|.-++..-=|....-...+...=-..+++|
T Consensus 456 -------AeAhsNLasi~---kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 456 -------AEAHSNLASIY---KDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred -------HHHHhhHHHHh---hccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 12445677776 67788899999999999999987765544444444444444333344433
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=2.5e-14 Score=176.62 Aligned_cols=243 Identities=16% Similarity=0.014 Sum_probs=204.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD 100 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg 100 (1011)
..+..|++.+|+..++++++.+|+++.++...|.++.+.|++++|+..+++++++ .|.+..++..++.++...|
T Consensus 85 ~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g 158 (656)
T PRK15174 85 SPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMD 158 (656)
T ss_pred hHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCC
Confidence 3457999999999999999999999999999999999999999999999999775 6889999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 001799 101 RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLA 180 (1011)
Q Consensus 101 ~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LA 180 (1011)
++++|+..|+++++.+|++.+++..+ ..+.+.|++.+|...+.++.+.+|......+...+..+. ..++ +..|
T Consensus 159 ~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~-~~g~-----~~eA 231 (656)
T PRK15174 159 KELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC-AVGK-----YQEA 231 (656)
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-HCCC-----HHHH
Confidence 99999999999999999998877655 458899999999999988888876432212222222221 1221 3456
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 181 EGLLKKHVASHSLHEPEALIVYISILEQQSKYGD----ALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 256 (1011)
Q Consensus 181 ek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eE----AL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~k 256 (1011)
...++++++..| .+...+..++.++..+|++++ |+..+++++.. .|+.+..+..+|.++.+.|++++|...+++
T Consensus 232 ~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 232 IQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-NSDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666667777777 788899999999999999986 89999999864 788888888899999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHhcc
Q 001799 257 ILELSPDDWECFLHYLGCLLED 278 (1011)
Q Consensus 257 aL~~nPDdw~~~~~yl~all~~ 278 (1011)
+++.+|++..++..+...+...
T Consensus 310 al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 310 SLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHHC
Confidence 9999999999988877666553
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=4.7e-13 Score=175.37 Aligned_cols=245 Identities=14% Similarity=0.074 Sum_probs=176.1
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHH-
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTL- 89 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al- 89 (1011)
..+..+.++-=....++++.|.+.++|++..+|+++.++...+.++.+.|+.++|.+.++++.++ .|.++.++
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~------~P~~~~~~~ 100 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQL------APDSNAYRS 100 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh------CCCChHHHH
Confidence 44567778777788899999999999999999999999999999999999999999999887664 56666653
Q ss_pred ---------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHcCCc
Q 001799 90 ---------------STLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGL-FNCYVREYSFVKQQQTAIKMYKHAGEE 153 (1011)
Q Consensus 90 ---------------~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~L-f~ayvr~~d~~~Aqq~a~kL~K~~P~~ 153 (1011)
..++.++...|++++|++.|+++++.+|.+.++...+ .......+++.+|.+.+.++.+.+|++
T Consensus 101 ~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~ 180 (1157)
T PRK11447 101 SRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGN 180 (1157)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCC
Confidence 4456678889999999999999999988887644333 233334588999999999999999987
Q ss_pred HHHHHHHHHHHHHHhcCC--cHHHHHH---------------------------HHHHHHHHHHhcCCCCCH--------
Q 001799 154 RFLLWAVCSIQLQVLCGN--GGEKLLL---------------------------LAEGLLKKHVASHSLHEP-------- 196 (1011)
Q Consensus 154 ry~~Wai~sl~Lq~~~~~--~a~klL~---------------------------LAek~Lekai~~~p~~~~-------- 196 (1011)
.. .+..++.++.. .++ ++...+. .+...+.......| +..
T Consensus 181 ~~-~~~~LA~ll~~-~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p-~~~~~~~A~~~ 257 (1157)
T PRK11447 181 TG-LRNTLALLLFS-SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFS-DGDSVAAARSQ 257 (1157)
T ss_pred HH-HHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCC-CchHHHHHHHH
Confidence 64 33333333311 111 0111110 00011111111111 100
Q ss_pred ------------HHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 197 ------------EALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 197 ------------eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
......+..+..+|++++|+..+++++.. .|.+++.+..+|.++.+.|++++|...|+++++.+|++
T Consensus 258 L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~ 336 (1157)
T PRK11447 258 LAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS 336 (1157)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 01124477888899999999999999864 78888888899999999999999999999999999986
Q ss_pred H
Q 001799 265 W 265 (1011)
Q Consensus 265 w 265 (1011)
.
T Consensus 337 ~ 337 (1157)
T PRK11447 337 S 337 (1157)
T ss_pred c
Confidence 4
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.69 E-value=2.2e-14 Score=176.20 Aligned_cols=239 Identities=15% Similarity=0.100 Sum_probs=198.6
Q ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 25 SRQFKNALKQSTALLAK---YPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk---~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
.++|.+|++.++++++. .|+...++..+|.++..+|++++|+..+++++++ .|.+..++..+|.++...|+
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l------~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL------DPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHCCC
Confidence 47899999999999986 4788889999999999999999999999999775 68889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAE 181 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAe 181 (1011)
+++|+..|+++++.+|++.+++..++.++...|++.+|...+.+..+..|++.+ .|..++.++. ..+. +..|.
T Consensus 381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~-~~~~la~~~~-~~g~-----~~eA~ 453 (615)
T TIGR00990 381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF-SHIQLGVTQY-KEGS-----IASSM 453 (615)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH-HHHHHHHHHH-HCCC-----HHHHH
Confidence 999999999999999999999999999999999999999999999999999876 3444444432 1222 44566
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh------HHHHHHHH-HHHHHcCCHHHHHHHH
Q 001799 182 GLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE------VDKLRMQG-RLLARQGDYTAAAQIY 254 (1011)
Q Consensus 182 k~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~------~~~l~l~a-~ll~klg~~eeA~~~~ 254 (1011)
..+++++...| .+++.+..++.++..+|++++|++.++.++.. .|.. ...+...+ .++...|++++|...|
T Consensus 454 ~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 66666667777 78889999999999999999999999998743 3321 11122233 3344579999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhcc
Q 001799 255 KKILELSPDDWECFLHYLGCLLED 278 (1011)
Q Consensus 255 ~kaL~~nPDdw~~~~~yl~all~~ 278 (1011)
++++..+|++..++..+...+...
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999999999888777776654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.67 E-value=1.5e-14 Score=165.40 Aligned_cols=235 Identities=20% Similarity=0.119 Sum_probs=194.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLD 103 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~ 103 (1011)
.+|+.-.|++.+++++|.+|+.+.|+...|.+|-..+.+++|+..|.+|+.+ .|+...++-+++-+|.+.|..+
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeqG~ld 303 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQGLLD 303 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEEEEeccccHH
Confidence 5788889999999999999999999999999999999999999999888654 6888899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001799 104 LATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGL 183 (1011)
Q Consensus 104 eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~ 183 (1011)
-|+.+|++|+...|+.++++.+++.+....|+..+|.+.+.+.+...|+.+...-+..-++.+. ..++.|.++
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~-------~~~e~A~~l 376 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ-------GKIEEATRL 376 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-------ccchHHHHH
Confidence 9999999999999999999999999999999999999999999999998775322222222211 124456666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001799 184 LKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 263 (1011)
Q Consensus 184 Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPD 263 (1011)
.+++.+-.| +-.++...++.||..||++++|+..++.++.. .|.-.+.+..+|..|...|+.++|+..|.+++..||.
T Consensus 377 y~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI-~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt 454 (966)
T KOG4626|consen 377 YLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALRI-KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT 454 (966)
T ss_pred HHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc-CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH
Confidence 666666677 77788889999999999999999999998753 5666677888899999999999999999999999998
Q ss_pred CHHHHHHHHH
Q 001799 264 DWECFLHYLG 273 (1011)
Q Consensus 264 dw~~~~~yl~ 273 (1011)
-.++...+..
T Consensus 455 ~AeAhsNLas 464 (966)
T KOG4626|consen 455 FAEAHSNLAS 464 (966)
T ss_pred HHHHHhhHHH
Confidence 8888776653
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=4.6e-13 Score=154.39 Aligned_cols=253 Identities=18% Similarity=0.113 Sum_probs=196.0
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
+.+.....++..|++++|+..+.++++.+|++..++...|.++.+.|++++|+..+++++.. + +........++..+|
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~-~~~~~~~~~~~~~La 114 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-P-DLTREQRLLALQELG 114 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-C-CCCHHHHHHHHHHHH
Confidence 33444556788999999999999999999999999999999999999999999999887542 0 000011235788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH----HHHHHHHHHHHHhc
Q 001799 94 IVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF----LLWAVCSIQLQVLC 169 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry----~~Wai~sl~Lq~~~ 169 (1011)
.+|...|++++|...|+++++.+|.+..++..++.++...|++.+|.+.+.++.+..|.+.. .+|..++..+. ..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~ 193 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-AR 193 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-hC
Confidence 99999999999999999999999999999999999999999999999999999988876421 12333332221 11
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh-HHHHHHHHHHHHHcCCHH
Q 001799 170 GNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE-VDKLRMQGRLLARQGDYT 248 (1011)
Q Consensus 170 ~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~-~~~l~l~a~ll~klg~~e 248 (1011)
+ . +..|.+.++++++..| .+.+..+.++.++..+|++++|+++++..+.. .|.. ...+...+.++.+.|+++
T Consensus 194 ~-~----~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 194 G-D----LDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred C-C----HHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHH
Confidence 1 1 3445555555555566 56788899999999999999999999998753 3433 344566788999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 249 AAAQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 249 eA~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
+|...++++++.+|++..+ ..+...+..
T Consensus 267 ~A~~~l~~~~~~~p~~~~~-~~la~~~~~ 294 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLL-LALAQLLEE 294 (389)
T ss_pred HHHHHHHHHHHhCCCchHH-HHHHHHHHH
Confidence 9999999999999987443 444444443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.2e-11 Score=148.94 Aligned_cols=234 Identities=18% Similarity=0.134 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001799 28 FKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATS 107 (1011)
Q Consensus 28 ~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~ 107 (1011)
.+.|.+.+.-++++.|+|..++.-||.+.+..|+|-.|+.+|+.++...+ ..+.|+. ..+|.|+..+++.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp---~~~aD~r--Igig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINP---ACKADVR--IGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCc---ccCCCcc--chhhhHHHhccchhhHHH
Confidence 68999999999999999999999999999999999999999999865433 2344443 458899999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001799 108 CYEYACGKYHNNMDHMMGLFNCYVREYS---FVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLL 184 (1011)
Q Consensus 108 ~YekAlk~~P~n~el~~~Lf~ayvr~~d---~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~L 184 (1011)
.|++|++++|.+..++..|+..-....+ ++.+.+...+.++.+|.+|. ..+.++.++ ....+.+....+|+.++
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~-~l~~LAn~f--yfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPV-ALNHLANHF--YFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcH-HHHHHHHHH--hhcccHHHHHHHHHHHH
Confidence 9999999999999988888776655554 55555666666778888886 233333332 11123556677888877
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001799 185 KKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE-VDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 263 (1011)
Q Consensus 185 ekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~-~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPD 263 (1011)
..... .+ .-++..+.+++.+..+|+|++|-.++...++. .++. +-.++-.|.++.+.|+++.+...++++++.+|+
T Consensus 298 ~~t~~-~~-~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~ 374 (1018)
T KOG2002|consen 298 KNTEN-KS-IKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN 374 (1018)
T ss_pred Hhhhh-hH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc
Confidence 65421 22 34567899999999999999999999999865 4544 323455689999999999999999999999999
Q ss_pred CHHHHHHHH
Q 001799 264 DWECFLHYL 272 (1011)
Q Consensus 264 dw~~~~~yl 272 (1011)
+.....-+.
T Consensus 375 ~~etm~iLG 383 (1018)
T KOG2002|consen 375 NYETMKILG 383 (1018)
T ss_pred hHHHHHHHH
Confidence 999987443
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.59 E-value=2.1e-11 Score=153.50 Aligned_cols=233 Identities=14% Similarity=-0.003 Sum_probs=111.5
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL 102 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~ 102 (1011)
...|++.+|+..++++++.+|+++.+....+.++...|++++|+..++++++. .|.+.. +..+|.++...|++
T Consensus 60 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~------~P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG------APDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHH-HHHHHHHHHHCCCH
Confidence 34455555555555555555555444444444445555555555554444332 344444 44455555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHh--cC-CcHHHH--
Q 001799 103 DLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVL--CG-NGGEKL-- 176 (1011)
Q Consensus 103 ~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~-ry~~Wai~sl~Lq~~--~~-~~a~kl-- 176 (1011)
++|+..|+++++.+|++.+++..++.++...+..++|.+.+.++.+ .|+. ...-|.......... .. .....+
T Consensus 133 ~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ 211 (765)
T PRK10049 133 WDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAI 211 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHH
Confidence 5555555555555555544444444444444444444443332222 2221 000010000000000 00 000000
Q ss_pred HHHHHHHHHHHHhc---CCCCCH---HHHHHHHHHHHHcCChHHHHHHHHhhhcccCCC-hHHHHHHHHHHHHHcCCHHH
Q 001799 177 LLLAEGLLKKHVAS---HSLHEP---EALIVYISILEQQSKYGDALEILSGTLGSLLVI-EVDKLRMQGRLLARQGDYTA 249 (1011)
Q Consensus 177 L~LAek~Lekai~~---~p~~~~---eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~-~~~~l~l~a~ll~klg~~ee 249 (1011)
.+.|...++++++. +|-..+ ...+.....+..+|++++|++.++..+.. .+. ........|.++..+|++++
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-~~~~P~~a~~~la~~yl~~g~~e~ 290 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE-GQIIPPWAQRWVASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHhcCCcHH
Confidence 12233333343322 331111 11122133456779999999999998753 221 11122335889999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 001799 250 AAQIYKKILELSPDD 264 (1011)
Q Consensus 250 A~~~~~kaL~~nPDd 264 (1011)
|...|+++++.+|.+
T Consensus 291 A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 291 AQSILTELFYHPETI 305 (765)
T ss_pred HHHHHHHHhhcCCCC
Confidence 999999999988876
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=1.5e-13 Score=160.29 Aligned_cols=256 Identities=16% Similarity=0.070 Sum_probs=220.7
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhh----------------
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLY---------------- 77 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~---------------- 77 (1011)
|-+..+|..+..=+.++|+..+.++-.++++.+..+...|.+++.++++++|..+++.+-+.-+
T Consensus 321 r~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL 400 (638)
T KOG1126|consen 321 RGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL 400 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 4477888889999999999999999999999999999999999999999999999887653111
Q ss_pred ----------h--CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001799 78 ----------Q--NDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIK 145 (1011)
Q Consensus 78 ----------~--d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~k 145 (1011)
+ -...|.-+++|-.+|.||--.++++.|+++|++|++.+|+..=++..++--++...+|++|.+.+.+
T Consensus 401 q~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 401 QDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 0 0245778899999999999999999999999999999999877778888889999999999999999
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Q 001799 146 MYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGS 225 (1011)
Q Consensus 146 L~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~ 225 (1011)
.++..|++ |-.|+++++++... .-+..|+-.++||++.+| .+...+..++.++.+.|+.++|+.+++++.-
T Consensus 481 Al~~~~rh-YnAwYGlG~vy~Kq------ek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~- 551 (638)
T KOG1126|consen 481 ALGVDPRH-YNAWYGLGTVYLKQ------EKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIH- 551 (638)
T ss_pred hhcCCchh-hHHHHhhhhheecc------chhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHh-
Confidence 99888876 55899988875221 126788999999999999 8888999999999999999999999999973
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Q 001799 226 LLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 278 (1011)
Q Consensus 226 ~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~ 278 (1011)
..|.++-.-+.+|.++..+++|++|...++++-+.-||+..++..+....-..
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL 604 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 46777766788999999999999999999999999999999987666555443
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.54 E-value=6.9e-12 Score=157.80 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
+.-+.-+++.|++.+|+..++++++.+|+++. +...|.++.+.|++++|+..++++++. .|.++.++..++.+
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~ 159 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR------APQTQQYPTEYVQA 159 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 34445668899999999999999999999999 999999999999999999999999775 68999999999999
Q ss_pred HHHcCCHHHHHH
Q 001799 96 FQRLDRLDLATS 107 (1011)
Q Consensus 96 ~~~lg~~~eA~~ 107 (1011)
+...++.++|+.
T Consensus 160 l~~~~~~e~Al~ 171 (765)
T PRK10049 160 LRNNRLSAPALG 171 (765)
T ss_pred HHHCCChHHHHH
Confidence 887777654443
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.54 E-value=1.1e-12 Score=159.11 Aligned_cols=220 Identities=14% Similarity=-0.013 Sum_probs=173.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERM---------GKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rl---------gk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
.+++++|+.+++++++.+|+++.++...|.++..+ +++++|...+++++++ .|+++.++..+|.+
T Consensus 274 ~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l------dP~~~~a~~~lg~~ 347 (553)
T PRK12370 274 PYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL------DHNNPQALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc------CCCCHHHHHHHHHH
Confidence 45678999999999999999999999988876643 3489999999999775 69999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEK 175 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~k 175 (1011)
+...|++++|+..|++|++.+|++.++++.++.++...|++++|...+.++.+.+|.++...+.....++. .+.
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~--~g~---- 421 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY--HTG---- 421 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh--ccC----
Confidence 99999999999999999999999999999999999999999999999999999999976322222222222 121
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001799 176 LLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYK 255 (1011)
Q Consensus 176 lL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~ 255 (1011)
++.|...++++....+-.++..+.+++.++..+|++++|.+.+.+.... .|.........+..+...| ++|...++
T Consensus 422 -~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~a~~~l~ 497 (553)
T PRK12370 422 -IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQNS--ERALPTIR 497 (553)
T ss_pred -HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhccH--HHHHHHHH
Confidence 2344444444444432256777888999999999999999999887543 4555555566666777777 47777788
Q ss_pred HHHHh
Q 001799 256 KILEL 260 (1011)
Q Consensus 256 kaL~~ 260 (1011)
++++.
T Consensus 498 ~ll~~ 502 (553)
T PRK12370 498 EFLES 502 (553)
T ss_pred HHHHH
Confidence 77764
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.52 E-value=6.7e-12 Score=144.75 Aligned_cols=241 Identities=15% Similarity=0.006 Sum_probs=186.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNS----PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~----~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
..-+...|++.+|+..++++++..+.. ..++...|.++.+.|++++|...++++++. .|.+..++..++.
T Consensus 76 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~ 149 (389)
T PRK11788 76 GNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------GDFAEGALQQLLE 149 (389)
T ss_pred HHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC------CcchHHHHHHHHH
Confidence 334578999999999999998863333 245677899999999999999999987553 5778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMD-----HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLC 169 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~e-----l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~ 169 (1011)
++...|++++|++.|+++++..|.+.. ++..++..+.+.+++.+|.+.+.++.+..|+... .|..++..+. ..
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~-~~ 227 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVR-ASILLGDLAL-AQ 227 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH-HHHHHHHHHH-HC
Confidence 999999999999999999999887643 3456788889999999999999999999998754 3333333332 12
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHH
Q 001799 170 GNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTA 249 (1011)
Q Consensus 170 ~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~ee 249 (1011)
++ +..|.++++++....|......+..++.++..+|++++|++.++..+.. .|+... ....+.++.+.|++++
T Consensus 228 g~-----~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~p~~~~-~~~la~~~~~~g~~~~ 300 (389)
T PRK11788 228 GD-----YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE-YPGADL-LLALAQLLEEQEGPEA 300 (389)
T ss_pred CC-----HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchH-HHHHHHHHHHhCCHHH
Confidence 22 3345555555555555223456677889999999999999999998753 555433 4678899999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001799 250 AAQIYKKILELSPDDWECFLHYLGCL 275 (1011)
Q Consensus 250 A~~~~~kaL~~nPDdw~~~~~yl~al 275 (1011)
|...++++++.+|++..+. .++...
T Consensus 301 A~~~l~~~l~~~P~~~~~~-~l~~~~ 325 (389)
T PRK11788 301 AQALLREQLRRHPSLRGFH-RLLDYH 325 (389)
T ss_pred HHHHHHHHHHhCcCHHHHH-HHHHHh
Confidence 9999999999999987554 344333
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=5e-12 Score=141.62 Aligned_cols=228 Identities=14% Similarity=0.055 Sum_probs=168.4
Q ss_pred CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 26 RQFKNALKQSTALLAKYP----NSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 26 gn~KqAL~l~dklLKk~P----~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
++...++..++++|...| +.+.++..+|.++.+.|++++|...+++++++ .|+++.++..+|.++...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHCCC
Confidence 466788999999996544 33667999999999999999999999999775 68999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhcCCcHHHHHHHH
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF-LLWAVCSIQLQVLCGNGGEKLLLLA 180 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry-~~Wai~sl~Lq~~~~~~a~klL~LA 180 (1011)
+++|+..|++|++.+|++..++..++.++...|++.+|.+.+.+.++.+|++++ ..|..+ .+. .. ... .|
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l---~~~-~~-~~~----~A 184 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYL---AES-KL-DPK----QA 184 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHc-cC-CHH----HH
Confidence 999999999999999999999999999999999999999999999999999874 334322 111 11 222 33
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHH--HHHHHhhhcc---cCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001799 181 EGLLKKHVASHSLHEPEALIVYISILEQQSKYGDA--LEILSGTLGS---LLVIEVDKLRMQGRLLARQGDYTAAAQIYK 255 (1011)
Q Consensus 181 ek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEA--L~~L~~~l~~---~~~~~~~~l~l~a~ll~klg~~eeA~~~~~ 255 (1011)
...+++.....+ ++.+. .+.+....|+..++ ++.+...+.. ..+...+.++.+|.++.+.|++++|...|+
T Consensus 185 ~~~l~~~~~~~~---~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 185 KENLKQRYEKLD---KEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHHHhhCC---ccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333222211 12222 34444556665443 3333332211 012334678889999999999999999999
Q ss_pred HHHHhCC-CCHHHHHHHH
Q 001799 256 KILELSP-DDWECFLHYL 272 (1011)
Q Consensus 256 kaL~~nP-Ddw~~~~~yl 272 (1011)
++++.+| |...+...++
T Consensus 261 ~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 261 LALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHhCCchHHHHHHHHH
Confidence 9999997 5555554444
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=1.9e-11 Score=146.55 Aligned_cols=260 Identities=18% Similarity=0.204 Sum_probs=198.3
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
.-.+.+...++-.|++..|...+..++|++|.++.++...|.|+.+.|+.++|+.....|..+ .|+|.+.|..+
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~d~e~W~~l 213 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------NPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc------CCCChHHHHHH
Confidence 345788889999999999999999999999999999999999999999999999877666554 68899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH-----HHHHHHHHHH--
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF-----LLWAVCSIQL-- 165 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry-----~~Wai~sl~L-- 165 (1011)
+.....+|.+++|.-+|.+|++.+|.|.+....-...|.+.|+.+.|-..+.+++...|...+ ..|.++-.+.
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999883211 1111111110
Q ss_pred -----------HHhc--CC-----cH----HHHH-----H----------------------------------------
Q 001799 166 -----------QVLC--GN-----GG----EKLL-----L---------------------------------------- 178 (1011)
Q Consensus 166 -----------q~~~--~~-----~a----~klL-----~---------------------------------------- 178 (1011)
++.. .. +. +.++ +
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 0000 00 00 0000 0
Q ss_pred ---------------------HHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHH
Q 001799 179 ---------------------LAEGLLKKHVASH--SLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLR 235 (1011)
Q Consensus 179 ---------------------LAek~Lekai~~~--p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~ 235 (1011)
+.+-.+......+ +.+..+-++-.+..|..-|+|.+|+.++..............|+
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 0111111111111 22233445555688889999999999999987542223456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Q 001799 236 MQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 278 (1011)
Q Consensus 236 l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~ 278 (1011)
.+|++|+.+|.+++|...|.++|..+||+.++...+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 8999999999999999999999999999999998776555443
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.51 E-value=8.7e-14 Score=154.11 Aligned_cols=249 Identities=17% Similarity=0.154 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKY--PNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLST 91 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~--P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~ 91 (1011)
.+++-..-++..|++++|++.+++.+.+. |+++.++.+.|.+...+|++++|...+++++.. .+..+..+..
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~------~~~~~~~~~~ 83 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS------DKANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccc
Confidence 34455566789999999999998776665 899999999999999999999999999987553 3445566667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHhc
Q 001799 92 LQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHA--GEERFLLWAVCSIQLQVLC 169 (1011)
Q Consensus 92 Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~--P~~ry~~Wai~sl~Lq~~~ 169 (1011)
++.+ ...+++++|..+++++.+..++ +..+..++..+.+.+++.++.....++.... |+++. +|...+.+... .
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~a~~~~~-~ 159 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERDGD-PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSAR-FWLALAEIYEQ-L 159 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HH-HHHHHHHHHHH-C
T ss_pred cccc-cccccccccccccccccccccc-cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHH-HHHHHHHHHHH-c
Confidence 7766 6899999999999999987764 6777888899999999999998877776543 34444 67777766532 2
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHH
Q 001799 170 GNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTA 249 (1011)
Q Consensus 170 ~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~ee 249 (1011)
++ ...|.+.+++++..+| .+++....++.++...|+++++.+.+...... .|.++..+...|.++..+|++++
T Consensus 160 G~-----~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 160 GD-----PDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp CH-----HHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHH
T ss_pred CC-----HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccc
Confidence 21 3466777777788888 78888999999999999999988888887653 45555566678999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 001799 250 AAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 250 A~~~~~kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
|...+++++..+|+|+..+..|.+.+...+
T Consensus 233 Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 233 ALEYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999999999999987654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=5.6e-11 Score=143.33 Aligned_cols=129 Identities=13% Similarity=0.099 Sum_probs=102.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLD 103 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~ 103 (1011)
+..+|+.|+++..++.+.+|+||.++...|.-++-.|++..+..++..++.... ..+.-.+..+.+|.+|-.+|+|+
T Consensus 248 d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 248 DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHH
Confidence 446788888888888888888888888888888888888888888887754321 23445566788888888888888
Q ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 104 LATSCYEYACGKYHNNMD-HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 104 eA~~~YekAlk~~P~n~e-l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
+|-.+|..+.+.+|++.. ...++++.|+..|++..+...+.++++..|++..
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 888888888888888732 3457888888888888888888888888888764
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.49 E-value=9.9e-10 Score=137.46 Aligned_cols=196 Identities=12% Similarity=0.014 Sum_probs=158.3
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+-+.-.+.-.+++|++..|+..++++++.+|+++.+..-.+.++...|+.++|+..+++++. +.|.....+..+
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~------p~n~~~~~llal 108 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS------SMNISSRGLASA 108 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc------CCCCCHHHHHHH
Confidence 34455666789999999999999999999999975544666677788999999999999842 245566666667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCc
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNG 172 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~ 172 (1011)
+.+|...|++++|+++|+++++.+|+|++++..+++.|...++..+|.+.+.++.+.+|++.++ .+..++..... .
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~---l~layL~~~~~-~ 184 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY---MTLSYLNRATD-R 184 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH---HHHHHHHHhcc-h
Confidence 8899999999999999999999999999999999999999999999999999999999987653 22223221111 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 001799 173 GEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL 223 (1011)
Q Consensus 173 a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l 223 (1011)
. .+ |...++++++.+| .+.+.+..|..++...|-..-|++++....
T Consensus 185 ~---~~-AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 185 N---YD-ALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred H---HH-HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 1 22 5555666667788 889999999999999999999999988764
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.49 E-value=1.3e-11 Score=156.82 Aligned_cols=227 Identities=10% Similarity=-0.079 Sum_probs=166.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDL 104 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~e 104 (1011)
.|++.+|+..+.+++...|++. .....|.++.+.|++++|+..++++.. .|.+...+..+|.++...|++++
T Consensus 489 ~~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~-------~~p~~~a~~~la~all~~Gd~~e 560 (987)
T PRK09782 489 DTLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISL-------HDMSNEDLLAAANTAQAAGNGAA 560 (987)
T ss_pred hCCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhc-------cCCCcHHHHHHHHHHHHCCCHHH
Confidence 4677788888888888888754 355556666788888888888877532 12334556777888888888888
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001799 105 ATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLL 184 (1011)
Q Consensus 105 A~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~L 184 (1011)
|...|+++++.+|++..+...++....+.|++.+|...+.+..+..|+ .. .|..++.++.. .+. .+.|...+
T Consensus 561 A~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~-a~~~LA~~l~~-lG~-----~deA~~~l 632 (987)
T PRK09782 561 RDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-AN-AYVARATIYRQ-RHN-----VPAAVSDL 632 (987)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HH-HHHHHHHHHHH-CCC-----HHHHHHHH
Confidence 888888888888887766666666666778888888888888888886 32 34444444322 111 34566666
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 185 KKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 185 ekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
+++++.+| .+.+....++.++..+|++++|++.+++++.. .|.++..++.+|.++...|++++|...|+++++.+|++
T Consensus 633 ~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 633 RAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 66677777 77788888888888888888888888888753 67777778888888888888888888888888888887
Q ss_pred HHHHH
Q 001799 265 WECFL 269 (1011)
Q Consensus 265 w~~~~ 269 (1011)
.....
T Consensus 711 a~i~~ 715 (987)
T PRK09782 711 ALITP 715 (987)
T ss_pred chhhh
Confidence 66654
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.47 E-value=3e-11 Score=126.42 Aligned_cols=197 Identities=16% Similarity=0.171 Sum_probs=115.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
.-...++..|++++|+..++++++.+|++..++...|.++...|++++|.+.++++++. .|.+..++..+|.++
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------NPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Confidence 33444555566666666666666666665555555666666666666666665555443 344555555556666
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHH
Q 001799 97 QRLDRLDLATSCYEYACGKY--HNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGE 174 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~--P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~ 174 (1011)
...|++++|...|++++... |.....+..++.++...|++.+|.+.+.+..+
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------- 163 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ-------------------------- 163 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------------
Confidence 66666666666666655432 23333444455555555555554444333333
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 175 KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 175 klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
..| .+.+.+..++.++..+|++++|...++..+.. .+..+..+...+.++...|++++|....
T Consensus 164 ---------------~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 164 ---------------IDP-QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYG 226 (234)
T ss_pred ---------------hCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333 34445556677777788888888888877643 4555555666677788888888888777
Q ss_pred HHHHHhCC
Q 001799 255 KKILELSP 262 (1011)
Q Consensus 255 ~kaL~~nP 262 (1011)
+.+....|
T Consensus 227 ~~~~~~~~ 234 (234)
T TIGR02521 227 AQLQKLFP 234 (234)
T ss_pred HHHHhhCc
Confidence 76665543
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=9.5e-13 Score=153.70 Aligned_cols=218 Identities=18% Similarity=0.146 Sum_probs=187.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 34 QSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYAC 113 (1011)
Q Consensus 34 l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAl 113 (1011)
++..+++.+|+.|..|...|.++.-+++.+.|++.+++|+.+ .|.+.-++.++|.=+.....+|+|..+|++|+
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL------DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc------CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 344456668999999999999999999999999999999775 68899999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCC
Q 001799 114 GKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSL 193 (1011)
Q Consensus 114 k~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~ 193 (1011)
+.+|.+..+|+.+++.|.+.++++.|+-.+.++...+|.+....-.+ +.+++. .+..+.|..++++|+-.+|
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~-g~~~~~------~k~~d~AL~~~~~A~~ld~- 554 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI-GRIQHQ------LKRKDKALQLYEKAIHLDP- 554 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh-hHHHHH------hhhhhHHHHHHHHHHhcCC-
Confidence 99999999999999999999999999999999999999997522211 222211 1234577778888888888
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001799 194 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 266 (1011)
Q Consensus 194 ~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~ 266 (1011)
.++-..+..+.|+...++|+||+..|+.... ..|++...+++.|.+|.+.|+.+.|...+-=+++++|.-.+
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~-~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKE-LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHH-hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8888999999999999999999999999853 47888888999999999999999999999999999887443
No 30
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=1.2e-11 Score=138.49 Aligned_cols=203 Identities=12% Similarity=-0.006 Sum_probs=153.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
+...|++.+|+..++++++.+|+++.++..+|.++.+.|++++|++.+++++++ .|.+..++..+|.++...|+
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCC
Confidence 457799999999999999999999999999999999999999999999999875 68999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAE 181 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAe 181 (1011)
+++|++.|+++++.+|++.. ...|...+...+++.+|...+.+.....+.. ...|......+ ... .....+..+.
T Consensus 148 ~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~-~~~~~~~~~~l--g~~-~~~~~~~~~~ 222 (296)
T PRK11189 148 YELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEKLDKE-QWGWNIVEFYL--GKI-SEETLMERLK 222 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhCCcc-ccHHHHHHHHc--cCC-CHHHHHHHHH
Confidence 99999999999999999873 3344445566788999988876655433322 22354433332 111 1223344333
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHH
Q 001799 182 GLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRM 236 (1011)
Q Consensus 182 k~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l 236 (1011)
+.+++.++..| ...+.++.++.++..+|++++|+..++.++....++.++..+.
T Consensus 223 ~~~~~~~~l~~-~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~ 276 (296)
T PRK11189 223 AGATDNTELAE-RLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYA 276 (296)
T ss_pred hcCCCcHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 33333333333 4567899999999999999999999999986422355554333
No 31
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.2e-10 Score=136.25 Aligned_cols=254 Identities=11% Similarity=-0.056 Sum_probs=186.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcH-HHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDD-LTLSTLQI 94 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~-~al~~Lg~ 94 (1011)
+....-++..|+|++|.+.+.+..+..|+...++.+.|.+..+.|++++|...+.++.+. .|.+. .+....+.
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~------~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL------AGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCcCchHHHHHHHH
Confidence 455566778999999999999999999999999999999999999999999999988653 45554 35555799
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-hcCCcH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQV-LCGNGG 173 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~-~~~~~a 173 (1011)
++...|++++|...++++.+.+|+|+.++..++.+|.+.|||..+.+...++.|....++..+-.......+. ......
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999899888544332121111111100 000000
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHH--HHHHHHHHHHcCCHHHHH
Q 001799 174 EKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDK--LRMQGRLLARQGDYTAAA 251 (1011)
Q Consensus 174 ~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~--l~l~a~ll~klg~~eeA~ 251 (1011)
.+......++.+......+ ++++....++..+...|++++|++.+++.+.. .|++... ..+........++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~-~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRR-HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-LGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHh-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCCcccchhHHHHHhhhcCCCChHHHH
Confidence 0011122222222111112 47788999999999999999999999999865 5655432 122333344568899999
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHhc
Q 001799 252 QIYKKILELSPDDW--ECFLHYLGCLLE 277 (1011)
Q Consensus 252 ~~~~kaL~~nPDdw--~~~~~yl~all~ 277 (1011)
+.+++.++.+|+|. .+...|...++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMK 347 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 99999999999999 666556555544
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.45 E-value=2.7e-11 Score=154.06 Aligned_cols=234 Identities=9% Similarity=-0.013 Sum_probs=199.1
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
++.-.+.+...|++++|+..+++++...|.+ ..+...|.++.+.|++++|...++++++. .|.+...+..++.
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l------~P~~~~l~~~La~ 584 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQR------GLGDNALYWWLHA 584 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCccHHHHHHHHH
Confidence 3344555578999999999999998876654 45678899999999999999999998664 4667676666777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGE 174 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~ 174 (1011)
.+...|++++|+..|++|++.+|+ .+++..++.++.+.|++.+|...+.+..+..|+++. .+..++.++.. .+.
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~-a~~nLG~aL~~-~G~--- 658 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN-YQAALGYALWD-SGD--- 658 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH-CCC---
Confidence 777789999999999999999996 889999999999999999999999999999999985 55666655532 222
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 175 KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 175 klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
++.|..+++++++..| .+++.++.++.++..+|++++|+..+++++.. .|.........|.+.....+++.|.+.+
T Consensus 659 --~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l-~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 659 --IAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD-IDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred --HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 4566667777888889 88999999999999999999999999999854 6777777788899999999999999999
Q ss_pred HHHHHhCCCCH
Q 001799 255 KKILELSPDDW 265 (1011)
Q Consensus 255 ~kaL~~nPDdw 265 (1011)
.+....+|+-|
T Consensus 735 ~r~~~~~~~~~ 745 (987)
T PRK09782 735 GRRWTFSFDSS 745 (987)
T ss_pred HHHhhcCccch
Confidence 99999999988
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=1.9e-10 Score=134.20 Aligned_cols=249 Identities=12% Similarity=0.047 Sum_probs=176.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHH-HHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLS-TLQI 94 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~-~Lg~ 94 (1011)
+....-++-.|||++|.+...+.-+..++-+..+.+-+.+..+.|++++|...+.++.+. .|++..+.. ..+.
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~~~~~~~~l~~a~ 161 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL------ADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCcchHHHHHHHHH
Confidence 344555677899999997777655543332444455566779999999999999998653 455543333 4488
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH--H---HHHHHHHHHHHhc
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF--L---LWAVCSIQLQVLC 169 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry--~---~Wai~sl~Lq~~~ 169 (1011)
++...|++++|.+.++++.+.+|+|+++...++.+|++.|||.++.....++.|..+.++. . .++...+.-+...
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888887664321 0 0111111111100
Q ss_pred CC------------------cHHH-------H-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 001799 170 GN------------------GGEK-------L-----LLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEIL 219 (1011)
Q Consensus 170 ~~------------------~a~k-------l-----L~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L 219 (1011)
.. ...- + ...|.+.+++..+.. .+++.+.+|+.+. .++++++++.+
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~~l~~~l~--~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLVLLIPRLK--TNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHhhcc--CCChHHHHHHH
Confidence 00 0000 0 245666666666633 3556666666653 38888888888
Q ss_pred HhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001799 220 SGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 276 (1011)
Q Consensus 220 ~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all 276 (1011)
++.+.. .|+++..+...|.++.+.|+|++|.+.++++++.+|++..+. .+.....
T Consensus 318 e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~-~La~~~~ 372 (398)
T PRK10747 318 RQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA-WLADALD 372 (398)
T ss_pred HHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH-HHHHHHH
Confidence 888764 788888888889999999999999999999999999986633 2444433
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=4.5e-11 Score=145.18 Aligned_cols=222 Identities=14% Similarity=-0.023 Sum_probs=174.3
Q ss_pred CCCCHH--HHHHHHHHHHHC---CChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHc---------CCHHHHHH
Q 001799 42 YPNSPY--ALALKALVLERM---GKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRL---------DRLDLATS 107 (1011)
Q Consensus 42 ~P~~~~--a~aLKA~aL~rl---gk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~l---------g~~~eA~~ 107 (1011)
.|.+.. ..+++|...... +..++|++.+++++++ .|++..++..++.+|... +++++|..
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~ 325 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKE 325 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHH
Confidence 445443 467777755543 4568999999999775 689999999999887643 34789999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 001799 108 CYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKH 187 (1011)
Q Consensus 108 ~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Leka 187 (1011)
.+++|++.+|++.+++..++.++...|++.+|...+.++.+.+|+++. .|..++..+. ..+. +..|...++++
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~-a~~~lg~~l~-~~G~-----~~eAi~~~~~A 398 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD-IKYYYGWNLF-MAGQ-----LEEALQTINEC 398 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-HCCC-----HHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875 3333443331 1222 34566777777
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 188 VASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 267 (1011)
Q Consensus 188 i~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~ 267 (1011)
++.+| .+....+.++.++..+|++++|++.+++.+....|..+..+...|.++..+|++++|...+++++...|+++..
T Consensus 399 l~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 399 LKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 78888 55555556666788899999999999998754235677777888999999999999999999999999999988
Q ss_pred HHHHHHHHhc
Q 001799 268 FLHYLGCLLE 277 (1011)
Q Consensus 268 ~~~yl~all~ 277 (1011)
+..+...+..
T Consensus 478 ~~~l~~~~~~ 487 (553)
T PRK12370 478 VNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhc
Confidence 8766554443
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.3e-10 Score=133.58 Aligned_cols=253 Identities=16% Similarity=0.098 Sum_probs=178.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
.....++..+.|++.++.++.+++++|-++..+-++--++..+|+..+=..+-.+.++. .|..+.+|...|..|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------YPSKALSWFAVGCYY 322 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCCcchhhHHHHH
Confidence 35667888999999999999999999988777766666777777776655554443332 577777788888777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc--HHHHHHHHHH-----------
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE--RFLLWAVCSI----------- 163 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~--ry~~Wai~sl----------- 163 (1011)
...|++.+|..+|-+|...+|.-..+|..++.++.-.++-+.|-.++....|.+|.. |+.|...--.
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 777888888888888888888777777777777777777777777777777777753 3322111000
Q ss_pred HHHHh--cCCcH------------HHHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 001799 164 QLQVL--CGNGG------------EKLLLLAEGLLKKHVAS------HSLHEPEALIVYISILEQQSKYGDALEILSGTL 223 (1011)
Q Consensus 164 ~Lq~~--~~~~a------------~klL~LAek~Lekai~~------~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l 223 (1011)
+.|+. .+.++ .+-++.|.+.++++... ..+.....+..+|.++.+++++++|+..++.++
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 01111 11110 11234555555544421 111244568899999999999999999999998
Q ss_pred cccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 224 GSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 224 ~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
. ..|.++..+--.|.++..+|+.+.|++.|.++|.++|||.-+-. ++..+++
T Consensus 483 ~-l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~-lL~~aie 534 (611)
T KOG1173|consen 483 L-LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE-LLKLAIE 534 (611)
T ss_pred H-cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH-HHHHHHH
Confidence 5 37778877777899999999999999999999999999965543 4444444
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=9.8e-10 Score=114.92 Aligned_cols=183 Identities=14% Similarity=0.043 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001799 46 PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMG 125 (1011)
Q Consensus 46 ~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~ 125 (1011)
..++...|.++...|++++|+..++++++. .|.+..++..+|.++...|++++|.+.|+++++.+|++..++..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 456677777788888888888887777553 46777777788888888888888888888888888877777777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001799 126 LFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISI 205 (1011)
Q Consensus 126 Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~I 205 (1011)
++..+...|++.+|.+.+.+..+..+ .+ .....+..++.+
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------------------~~-~~~~~~~~l~~~ 144 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPL---------------------------------------YP-QPARSLENAGLC 144 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccc---------------------------------------cc-cchHHHHHHHHH
Confidence 77777777777777665443322100 01 223455667888
Q ss_pred HHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001799 206 LEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCL 275 (1011)
Q Consensus 206 L~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~al 275 (1011)
+..+|++++|.+.++..+.. .|..+..+..+|.++...|++++|...+++++...|++...+.......
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQI-DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA 213 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89999999999999999854 6666777788899999999999999999999999888877776444443
No 37
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=5.5e-10 Score=116.79 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=124.5
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+-|+.-.+.++..|++.+|.+.++|+|+.+|++..++..+|.++.+.|..+-|.+.+++|+.+ .|++.+++++.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------~p~~GdVLNNY 109 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL------APNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc------CCCccchhhhh
Confidence 345778889999999999999999999999999999999999999999999999999999875 69999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 93 QIVFQRLDRLDLATSCYEYACG--KYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk--~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
|+++...|+|++|...|++|+. .+|.-.+.+.+++.+.++.|++..|...+.+.++..|+.+.
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 9999999999999999999987 46666778889999999999999998887777777777664
No 38
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.2e-10 Score=127.19 Aligned_cols=234 Identities=15% Similarity=0.109 Sum_probs=184.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHH----------------------------------HHHHHHHHHCCChHHHHHH
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYAL----------------------------------ALKALVLERMGKCDESLSV 68 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~----------------------------------aLKA~aL~rlgk~dEAl~l 68 (1011)
+..|+|++|+--+++++-.+|.+..+. +.-+..++-.++++.|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 456777777777777777777664332 3334444555777788888
Q ss_pred HHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001799 69 SLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYK 148 (1011)
Q Consensus 69 ~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K 148 (1011)
..++++. .|.+..++.+-|.+++.++|+++|+-.|+.|...-|-+.+.+.+|+.+|+..+.+++|.-.|...++
T Consensus 323 ~eK~I~~------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 323 VEKCIDS------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHHhcc------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 8877664 5788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHH-HHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccC
Q 001799 149 HAGEERFLLWAVCS-IQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLL 227 (1011)
Q Consensus 149 ~~P~~ry~~Wai~s-l~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~ 227 (1011)
.+|++.... ..++ .+. ..++.. -.-|.+.+++.+..+| ....++...+.++...|+++++++++++.+.. .
T Consensus 397 ~~~~sA~~L-tL~g~~V~-~~dp~~----rEKAKkf~ek~L~~~P-~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~ 468 (564)
T KOG1174|consen 397 LFQNSARSL-TLFGTLVL-FPDPRM----REKAKKFAEKSLKINP-IYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-F 468 (564)
T ss_pred Hhhcchhhh-hhhcceee-ccCchh----HHHHHHHHHhhhccCC-ccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-c
Confidence 999886421 1221 111 112222 2345666666677888 56779999999999999999999999999853 4
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001799 228 VIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHY 271 (1011)
Q Consensus 228 ~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~y 271 (1011)
++ ......+|+++...+.+++|.+.|..+|.+||.|-....++
T Consensus 469 ~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 469 PD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred cc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 43 33467789999999999999999999999999999988765
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.30 E-value=1e-09 Score=128.08 Aligned_cols=222 Identities=12% Similarity=0.025 Sum_probs=157.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 20 WDAIDSRQFKNALKQSTALLAKYPNSPYAL-ALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 20 ~dald~gn~KqAL~l~dklLKk~P~~~~a~-aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
.-+...|++..|.+.+.++.+.+|++..+. ...+.++.+.|++++|++.+++..+. .|+++.++..++.+|..
T Consensus 126 ~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV------APRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHH
Confidence 344677778888888877777777775433 34477777778888877777776443 57777777777777777
Q ss_pred cCCHHHHHHHHHHHHH------------------------------------------hCCCCHHHHHHHHHHHHHhcCH
Q 001799 99 LDRLDLATSCYEYACG------------------------------------------KYHNNMDHMMGLFNCYVREYSF 136 (1011)
Q Consensus 99 lg~~~eA~~~YekAlk------------------------------------------~~P~n~el~~~Lf~ayvr~~d~ 136 (1011)
.|++++|.+++.+..+ ..|+++++...++..+...|+.
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~ 279 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH 279 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence 7777777755554443 3445666666777777888888
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 001799 137 VKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDAL 216 (1011)
Q Consensus 137 ~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL 216 (1011)
.+|.+...+..+..|+... .. .+.+... .+..+.+..+++.+ +..| ++++-.+.+++++..++++++|.
T Consensus 280 ~~A~~~L~~~l~~~~~~~l--~~---l~~~l~~-~~~~~al~~~e~~l----k~~P-~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 280 DTAQQIILDGLKRQYDERL--VL---LIPRLKT-NNPEQLEKVLRQQI----KQHG-DTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHHHHHHHHHhcCCCHHH--HH---HHhhccC-CChHHHHHHHHHHH----hhCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888877777774444321 11 1111111 23344556666555 4577 78889999999999999999999
Q ss_pred HHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 217 EILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 217 ~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
+.++..+.. .|+... +...+.++.++|+.++|.++|++.|..
T Consensus 349 ~~le~al~~-~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 349 LAFRAALKQ-RPDAYD-YAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHhc-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999854 566554 445789999999999999999999875
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=5.4e-10 Score=128.67 Aligned_cols=254 Identities=17% Similarity=0.110 Sum_probs=182.1
Q ss_pred HhhHHHHHHHHHcCCHHH-HHHHHH-HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKN-ALKQST-ALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLS 90 (1011)
Q Consensus 13 eRrl~~I~dald~gn~Kq-AL~l~d-klLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~ 90 (1011)
+.+++-.|++....++.+ ++.-.. .-+-.-.+++....-+|..++..+++.+.++++...++. .|-+..++-
T Consensus 209 ~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~------dpfh~~~~~ 282 (611)
T KOG1173|consen 209 VERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEK------DPFHLPCLP 282 (611)
T ss_pred HHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh------CCCCcchHH
Confidence 456777777765444332 222221 222333577889999999999999999999999988664 355555554
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-----
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQL----- 165 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~L----- 165 (1011)
.---++.++|+..+-..+=-+.+..+|+.+-.|+..+.-|.-.+++.+|++.+-+....+|.-.. .|..++..+
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgp-aWl~fghsfa~e~E 361 (611)
T KOG1173|consen 283 LHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGP-AWLAFGHSFAGEGE 361 (611)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccH-HHHHHhHHhhhcch
Confidence 44348899998887666667788899999988999999999999999999998888877776433 466555433
Q ss_pred --HHh----------cCCcHH-----------HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 001799 166 --QVL----------CGNGGE-----------KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGT 222 (1011)
Q Consensus 166 --q~~----------~~~~a~-----------klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~ 222 (1011)
|+. .+-... .-+.+|++.+..+....| .++-.+.-++-|....+.|.+|..+++..
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 110 000000 114789999988888888 55555555666677788999999999988
Q ss_pred hcc---cCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 223 LGS---LLVIEV---DKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 223 l~~---~~~~~~---~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
+.. ..+..+ ..+..+|-++.+++++++|+..++++|...|.||.++....-.
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~i 498 (611)
T KOG1173|consen 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYI 498 (611)
T ss_pred HHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 622 111111 2366789999999999999999999999999999998755433
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=1.2e-09 Score=127.97 Aligned_cols=228 Identities=16% Similarity=0.108 Sum_probs=130.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH-HHHHHHcC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL-QIVFQRLD 100 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L-g~~~~~lg 100 (1011)
+++.|++.+|+..++++++.+|+++.++.+.+.++.+.|++++|.+.+.+..+. ....|.+...+... +.-+...+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~---~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA---GLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666666554322 00011111111111 11112222
Q ss_pred CHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHH
Q 001799 101 RLDLATSCYEYACGKYH----NNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKL 176 (1011)
Q Consensus 101 ~~~eA~~~YekAlk~~P----~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~kl 176 (1011)
..++..+.++++.+..| +++++...++..+...|++.+|.+...+..+.+|+++...+..+..+. ...+++..++
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~-~l~~~~~~~~ 318 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIP-RLKPEDNEKL 318 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhh-hcCCCChHHH
Confidence 33333445555555566 467777777778888888888888888888877776531111111111 1122233333
Q ss_pred HHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHh--hhcccCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001799 177 LLLAEGLLKKHVASHSLHEP--EALIVYISILEQQSKYGDALEILSG--TLGSLLVIEVDKLRMQGRLLARQGDYTAAAQ 252 (1011)
Q Consensus 177 L~LAek~Lekai~~~p~~~~--eel~l~~~IL~~qgk~eEAL~~L~~--~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~ 252 (1011)
+ +.+++..+..| .++ ..+..++.++.++|+|++|.++++. .+.. .|+... ....|.++.+.|+.++|.+
T Consensus 319 ~----~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~-~p~~~~-~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 319 E----KLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE-QLDAND-LAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred H----HHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc-CCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 3 33344445566 666 6677788888888888888888884 4332 444444 3466888888888888888
Q ss_pred HHHHHHHh
Q 001799 253 IYKKILEL 260 (1011)
Q Consensus 253 ~~~kaL~~ 260 (1011)
+|+++|..
T Consensus 392 ~~~~~l~~ 399 (409)
T TIGR00540 392 MRQDSLGL 399 (409)
T ss_pred HHHHHHHH
Confidence 88887653
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.28 E-value=1.8e-08 Score=126.35 Aligned_cols=230 Identities=9% Similarity=-0.072 Sum_probs=118.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALK--ALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLK--A~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
..|++.+|+..+++++ +|.+..+..++ |.++...|++++|+++++++++. .|+++.++..++.+|...++
T Consensus 80 ~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~------dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK------DPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhhcCC
Confidence 3455555555555555 33333333333 44555555555555555555443 45555555555555555555
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHH-------------------------
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFL------------------------- 156 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~------------------------- 156 (1011)
+++|++.++++++.+|.+... ..+...+...++..+|.+.+.++.+.+|++..+
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 555555555555555554332 222222222344444555555555555554421
Q ss_pred --------HHHHHHHHHH-Hhc---CC--cHH--HHHHHHHHHHHHHHh---cCCCCC---HHHHHHHHHHHHHcCChHH
Q 001799 157 --------LWAVCSIQLQ-VLC---GN--GGE--KLLLLAEGLLKKHVA---SHSLHE---PEALIVYISILEQQSKYGD 214 (1011)
Q Consensus 157 --------~Wai~sl~Lq-~~~---~~--~a~--klL~LAek~Lekai~---~~p~~~---~eel~l~~~IL~~qgk~eE 214 (1011)
.|.-...+-+ ... .. ..+ ..++-|...+++... ..|-.. ....+-+.-.|...|++++
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 1100000000 000 00 000 112233333333333 223111 1233455667788899999
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001799 215 ALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSP 262 (1011)
Q Consensus 215 AL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nP 262 (1011)
+++.++.......+.........|+.|..++++++|..+|+.++...|
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 999999885321222333455578999999999999999999998653
No 43
>PLN02789 farnesyltranstransferase
Probab=99.28 E-value=1.5e-09 Score=122.62 Aligned_cols=237 Identities=9% Similarity=0.001 Sum_probs=187.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMG-KCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL 102 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlg-k~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~ 102 (1011)
..+.+.+|+.+++++++.+|++..++..++.++..+| ++++|+..+.+++.. .|++..+|+..++++..+|+.
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHHHHHHHHHcCch
Confidence 4689999999999999999999999999999999999 579999999998764 689999999999999999974
Q ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-cCCcHHHHHHH
Q 001799 103 --DLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVL-CGNGGEKLLLL 179 (1011)
Q Consensus 103 --~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~-~~~~a~klL~L 179 (1011)
++++..+++++..+|+|..++.+.+.+....++|+++.+.+.++++.+|++.. .|.-.+.++... ...+....+..
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s-AW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS-AWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh-HHHHHHHHHHhccccccccccHHH
Confidence 67899999999999999999999999999999999999999999999998854 564444443211 00011122334
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcC----------
Q 001799 180 AEGLLKKHVASHSLHEPEALIVYISILEQ----QSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQG---------- 245 (1011)
Q Consensus 180 Aek~Lekai~~~p~~~~eel~l~~~IL~~----qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg---------- 245 (1011)
....+.+++..+| ++...+..+..++.. .+++.+|.+++...+.. .+.....+..+++++....
T Consensus 202 el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 202 ELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 4556667777888 888899999999987 35678899998887643 4555666777788776532
Q ss_pred --------CHHHHHHHHHHHHHhCCCCHHHHH
Q 001799 246 --------DYTAAAQIYKKILELSPDDWECFL 269 (1011)
Q Consensus 246 --------~~eeA~~~~~kaL~~nPDdw~~~~ 269 (1011)
..++|.+.|..+-+.+|=--.+|.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred hccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 347788889888656665555665
No 44
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.7e-07 Score=108.87 Aligned_cols=245 Identities=19% Similarity=0.163 Sum_probs=175.4
Q ss_pred CCcccCCCCCchHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCC
Q 001799 1 MASKFGLAGGIPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQND 80 (1011)
Q Consensus 1 m~~~~~~~~~v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~ 80 (1011)
|+....+...+.+..+.++..+..+|.|.+|++.++|+|..+|++..+..-|-.++.+.++|++|+.+.+.--..
T Consensus 1 ms~~~~~~~~~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~----- 75 (652)
T KOG2376|consen 1 MSKEKSGGSDNLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL----- 75 (652)
T ss_pred CCCcccCCcccHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-----
Confidence 555333344456888999999999999999999999999999999999999999999999999999766542110
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH-HHHH
Q 001799 81 STLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF-LLWA 159 (1011)
Q Consensus 81 ~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry-~~Wa 159 (1011)
-.+.....--++|+..+++.++|+++++ -.++.+..+...-++.+.|.++|.++..++..|.+...++.. ..-+
T Consensus 76 --~~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 76 --LVINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred --hhcchhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 0111111355778889999999999998 456665557777889999999999999999999887765421 1111
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh----ccc---CCC--h
Q 001799 160 VCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL----GSL---LVI--E 230 (1011)
Q Consensus 160 i~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l----~~~---~~~--~ 230 (1011)
.+.... .. +.-. +.+.....|-.+.+-++..+-++...|+|.+|++.|+.++ ..+ ... +
T Consensus 151 nl~a~~-a~----------l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe 218 (652)
T KOG2376|consen 151 NLLAVA-AA----------LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE 218 (652)
T ss_pred HHHHHH-Hh----------hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh
Confidence 111100 00 0011 2233445554467788888999999999999999999882 111 111 1
Q ss_pred H----HH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 231 V----DK-LRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 267 (1011)
Q Consensus 231 ~----~~-l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~ 267 (1011)
+ +. ...++.++..+|+.++|...|..++..+|-|-..
T Consensus 219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~ 260 (652)
T KOG2376|consen 219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS 260 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence 1 11 2235678899999999999999999999887654
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.25 E-value=4.2e-11 Score=132.75 Aligned_cols=222 Identities=18% Similarity=0.111 Sum_probs=97.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
+...|++..|++.++++++.+|.++......+.. ...+++++|+.++.++.+. +.++..+..+..++...++
T Consensus 54 a~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~-------~~~~~~l~~~l~~~~~~~~ 125 (280)
T PF13429_consen 54 AWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER-------DGDPRYLLSALQLYYRLGD 125 (280)
T ss_dssp ------------------------------------------------------------------------H-HHHTT-
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-------ccccchhhHHHHHHHHHhH
Confidence 3467899999999999999998887766555555 7899999999988776432 3466778888888999999
Q ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 001799 102 LDLATSCYEYACGKY--HNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLL 179 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~--P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~L 179 (1011)
++++...++++.... |.+..++...+..+.+.|++++|.+.+.+.++.+|+++. .+..++.++ .......+
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-~~~~l~~~l--i~~~~~~~---- 198 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-ARNALAWLL--IDMGDYDE---- 198 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-HHHHHHHHH--CTTCHHHH----
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHH--HHCCChHH----
Confidence 999999999977644 677888889999999999999999999999999999875 333333332 11111122
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 180 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 259 (1011)
Q Consensus 180 Aek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~ 259 (1011)
+...+++.....| .++.-+..++.++...|++++|+.+++..+.. .|.++..+...|.++...|+.++|..++++++.
T Consensus 199 ~~~~l~~~~~~~~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 199 AREALKRLLKAAP-DDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHH-H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHCc-CHHHHHHHHHHHhccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 2222322222223 34456778899999999999999999999864 788898888999999999999999999999886
Q ss_pred h
Q 001799 260 L 260 (1011)
Q Consensus 260 ~ 260 (1011)
.
T Consensus 277 ~ 277 (280)
T PF13429_consen 277 L 277 (280)
T ss_dssp -
T ss_pred c
Confidence 4
No 46
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.18 E-value=3.3e-09 Score=114.18 Aligned_cols=192 Identities=8% Similarity=-0.071 Sum_probs=121.8
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-
Q 001799 43 PNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMD- 121 (1011)
Q Consensus 43 P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~e- 121 (1011)
+..+..+..+|..+.+.|++++|+..+++++...+ ..|....++..+|.+|...|++++|+..|+++++.+|++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP---FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34455666666666677777777766666544311 11222245666777777777777777777777777776655
Q ss_pred --HHHHHHHHHHHh--------cCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcC
Q 001799 122 --HMMGLFNCYVRE--------YSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASH 191 (1011)
Q Consensus 122 --l~~~Lf~ayvr~--------~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~ 191 (1011)
+++.++.++... +++.+|.+.+.++.+.+|++.+ .|.....+. .....+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~~~-------------~~~~~~------- 165 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY-APDAKKRMD-------------YLRNRL------- 165 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh-HHHHHHHHH-------------HHHHHH-------
Confidence 345556666554 5666677776677777776654 121111110 000000
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001799 192 SLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVI---EVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 263 (1011)
Q Consensus 192 p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~---~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPD 263 (1011)
.......+.++..+|++++|+..++..+.. .|. .+..++.+|.++.++|++++|..+++.+....||
T Consensus 166 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 166 ----AGKELYVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 011235667788999999999999998754 443 4567888999999999999999988888777664
No 47
>PLN03077 Protein ECB2; Provisional
Probab=99.18 E-value=4.6e-08 Score=125.14 Aligned_cols=221 Identities=12% Similarity=0.008 Sum_probs=143.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAK--YPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk--~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
|.-+...|++.+|++++++..+. .|+... +.....++.+.|+.+.|.++.....+. ..+.|..++..|...|
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t-y~~ll~a~~~~g~~~~a~~l~~~~~~~-----g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMT-ITSVISACELLGDERLGREMHGYVVKT-----GFAVDVSVCNSLIQMY 333 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHhcCChHHHHHHHHHHHHh-----CCccchHHHHHHHHHH
Confidence 33456789999999999998775 466533 333333566789999999988776432 2345788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHhcCCcHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHA--GEERFLLWAVCSIQLQVLCGNGGE 174 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~--P~~ry~~Wai~sl~Lq~~~~~~a~ 174 (1011)
...|++++|.++|++.. .| |...+..+...|.+.|++++|.+.+..|.+.. |+... +-.++..+. ..+.
T Consensus 334 ~k~g~~~~A~~vf~~m~--~~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~--~~g~--- 404 (857)
T PLN03077 334 LSLGSWGEAEKVFSRME--TK-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACA--CLGD--- 404 (857)
T ss_pred HhcCCHHHHHHHHhhCC--CC-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHh--ccch---
Confidence 99999999999998864 33 45578889999999999999999988886543 65532 222222211 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 175 KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 175 klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
+..+.+..+.+.+.+...+......++..|.+.|++++|.++++.... + +...|......|.+.|++++|..+|
T Consensus 405 --~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~-d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 405 --LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---K-DVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred --HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---C-CeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 223333333333333323444555666777777777777777776532 1 1222333445566677777777777
Q ss_pred HHHHHh
Q 001799 255 KKILEL 260 (1011)
Q Consensus 255 ~kaL~~ 260 (1011)
++++..
T Consensus 479 ~~m~~~ 484 (857)
T PLN03077 479 RQMLLT 484 (857)
T ss_pred HHHHhC
Confidence 777653
No 48
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.15 E-value=4.6e-09 Score=114.45 Aligned_cols=253 Identities=15% Similarity=0.053 Sum_probs=155.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH-
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI- 94 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~- 94 (1011)
+|..-.++.-|+-|.|++-++++|...|+...|+.-+|.++.++|++++|.+-++.++.- ++......++...++.
T Consensus 76 frRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 76 FRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALI 152 (504)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhH
Confidence 444556677888888999999999998999889999999999999999999888887542 1000011111111111
Q ss_pred -----------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001799 95 -----------VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSI 163 (1011)
Q Consensus 95 -----------~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl 163 (1011)
-+...|++..|+++....+...|=+..++..-+.+|+..|+.++|..-.....|+..++...++-+..+
T Consensus 153 ~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L 232 (504)
T KOG0624|consen 153 QEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQL 232 (504)
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 123345555555555555555555555555555555555555555544444444444443222222222
Q ss_pred HHHHhc--------------CCcH-------------HHHHHHHHHHH------------HHHHhcCCC---CCHHHHHH
Q 001799 164 QLQVLC--------------GNGG-------------EKLLLLAEGLL------------KKHVASHSL---HEPEALIV 201 (1011)
Q Consensus 164 ~Lq~~~--------------~~~a-------------~klL~LAek~L------------ekai~~~p~---~~~eel~l 201 (1011)
+++..+ .++. .+.+..++..+ ++..+.+|- -......+
T Consensus 233 ~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 233 LYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred HHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 221100 0000 01111111111 111222331 11224456
Q ss_pred HHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001799 202 YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYL 272 (1011)
Q Consensus 202 ~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl 272 (1011)
++..+...|++.||+..+...+.. .|++++.+.-+|..|.....|+.|+.-|+++++.|++|-.+-..+-
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle 382 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLE 382 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 678888889999999999999853 7788888999999999999999999999999999999988876553
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.1e-08 Score=115.43 Aligned_cols=230 Identities=15% Similarity=0.131 Sum_probs=180.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH----
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAK-YPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLST---- 91 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk-~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~---- 91 (1011)
..+++-+. +...+++-.+..... .|++++.....|.+.+...++|+|+..++.+.. .|+-.-+|.+++..
T Consensus 234 ~~a~~el~--q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 234 KKAYQELH--QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRK---NDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcchhHHHHhHHHHH
Confidence 34444444 677788888888887 899999999999999999999999999988643 22111233333221
Q ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001799 92 ---------------------------LQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAI 144 (1011)
Q Consensus 92 ---------------------------Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~ 144 (1011)
+|.-|.-.+++++|+..|++|++++|+-..++...+--|++..+-..|...+.
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22334455677899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Q 001799 145 KMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLG 224 (1011)
Q Consensus 145 kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~ 224 (1011)
+..+.+|.+ |-.|..++..+.....+ --|.-.++|+.+..| .++.-+..++.+|.+.++.+||++.+.+++.
T Consensus 389 rAvdi~p~D-yRAWYGLGQaYeim~Mh------~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 389 RAVDINPRD-YRAWYGLGQAYEIMKMH------FYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHhcCchh-HHHHhhhhHHHHHhcch------HHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999977 44798888765433221 244456778888899 7888999999999999999999999999974
Q ss_pred ccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 225 SLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 225 ~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
. -.-+...+..+|.++.++++.++|...|++.++.
T Consensus 461 ~-~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 461 L-GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred c-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 2224456777899999999999999999999884
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=1.1e-09 Score=126.80 Aligned_cols=219 Identities=13% Similarity=0.028 Sum_probs=172.5
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 50 ALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNC 129 (1011)
Q Consensus 50 aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~a 129 (1011)
+..|+-+.+-|...+|.-.++.++.. .|.|.++|..||.+..+.++-..|+..++++++++|+|.+++..|+..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS 362 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS 362 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 56899999999999999999987543 799999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001799 130 YVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCG-----NGGEKLLLLAEGLLKKHVASHSLHEPEALIVYIS 204 (1011)
Q Consensus 130 yvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~-----~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~ 204 (1011)
|+..|.=..|-+...+.++..|... |.+..-- ..... .+...+....+..++-+.+.....+++....++-
T Consensus 363 ytNeg~q~~Al~~L~~Wi~~~p~y~---~l~~a~~-~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGV 438 (579)
T KOG1125|consen 363 YTNEGLQNQALKMLDKWIRNKPKYV---HLVSAGE-NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGV 438 (579)
T ss_pred HhhhhhHHHHHHHHHHHHHhCccch---hccccCc-cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHH
Confidence 9999988777777666666666532 2221100 00000 0122233344444443333222256778888899
Q ss_pred HHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 001799 205 ILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 205 IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
+|-..|+|+.|++.++.++.. .|.+...|..+|..+..-.+.++|+..|+++|++.|....+++.+.-+++..+
T Consensus 439 Ly~ls~efdraiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 999999999999999999854 78787788999999999999999999999999999999999998887776643
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=3.9e-09 Score=113.60 Aligned_cols=189 Identities=15% Similarity=0.026 Sum_probs=131.2
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSP---YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL 87 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~---~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~ 87 (1011)
..+.++.....++..|+|.+|+..++++++.+|+++ .++..+|.++.+.|++++|+..++++++.-+ ..|.-+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~ 108 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP---NHPDADY 108 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc---CCCchHH
Confidence 446678888899999999999999999999999987 4778999999999999999999999876521 1233334
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHH
Q 001799 88 TLSTLQIVFQRL--------DRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWA 159 (1011)
Q Consensus 88 al~~Lg~~~~~l--------g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wa 159 (1011)
++..+|.++... |++++|++.|+++++.+|++......++..... ..... . . .+.
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~~~~-----------~-~-~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RNRLA-----------G-K-ELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HHHHH-----------H-H-HHH
Confidence 799999999876 789999999999999999987654333322111 00000 0 0 111
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Q 001799 160 VCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLG 224 (1011)
Q Consensus 160 i~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~ 224 (1011)
....++. .+ ...+++....+.++... ..| ...+.++.++.++...|++++|.++++....
T Consensus 172 ~a~~~~~--~g-~~~~A~~~~~~al~~~p-~~~-~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLK--RG-AYVAAINRFETVVENYP-DTP-ATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHH--cC-ChHHHHHHHHHHHHHCC-CCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2222221 12 22333333333332211 123 3568899999999999999999998887643
No 52
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.14 E-value=5.3e-07 Score=112.89 Aligned_cols=241 Identities=10% Similarity=0.006 Sum_probs=162.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPN--SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~--~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
-|-.+...|+++.|+++++...+..|. +...+.....++.+.++.+.|.++....... ...| |..++..+..+
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~----g~~~-~~~~~n~Li~~ 167 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS----GFEP-DQYMMNRVLLM 167 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCc-chHHHHHHHHH
Confidence 455567789999999999998765432 3444555555577889999999988765432 2234 78899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHhcCCcHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE-RFLLWAVCSIQLQVLCGNGGE 174 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~-ry~~Wai~sl~Lq~~~~~~a~ 174 (1011)
|...|++++|.++|++.. .|+ ...+..+...|.+.|++++|.+.+.+|.+..+.. .+.+-.++.... ..+.
T Consensus 168 y~k~g~~~~A~~lf~~m~--~~~-~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~--~~~~--- 239 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMP--ERN-LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA--GLGS--- 239 (697)
T ss_pred HhcCCCHHHHHHHHhcCC--CCC-eeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh--cCCc---
Confidence 999999999999998874 353 5577889999999999999999999988765432 221212221111 1111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 175 KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 175 klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
+..+..+.....+..-..+......++..|.+.|++++|.++++.... .+...|......|.+.|++++|.++|
T Consensus 240 --~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 240 --ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred --HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 122222222222222223444556677888899999999999987632 23444666677888899999999999
Q ss_pred HHHHHhC--CCCHHHHHHHHHHHhcc
Q 001799 255 KKILELS--PDDWECFLHYLGCLLED 278 (1011)
Q Consensus 255 ~kaL~~n--PDdw~~~~~yl~all~~ 278 (1011)
++..+.+ || ...|..++.++...
T Consensus 314 ~~M~~~g~~pd-~~t~~~ll~a~~~~ 338 (697)
T PLN03081 314 YEMRDSGVSID-QFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHcCCCCC-HHHHHHHHHHHHhc
Confidence 9887753 54 44566666665543
No 53
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.14 E-value=3.2e-06 Score=109.08 Aligned_cols=246 Identities=10% Similarity=-0.008 Sum_probs=177.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYP--NSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P--~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
+.-+..+...|+++.|+++++...+.+. .+.........++.+.|..++|+.+++.. . .| |..++..+-
T Consensus 374 ~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M----~----~p-d~~Tyn~LL 444 (1060)
T PLN03218 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI----R----NP-TLSTFNMLM 444 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc----C----CC-CHHHHHHHH
Confidence 3444455688999999999999988753 23333343444567889999999988642 1 34 678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHhcCC
Q 001799 94 IVFQRLDRLDLATSCYEYACGKYHN-NMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE-ERFLLWAVCSIQLQVLCGN 171 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~~P~-n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~-~ry~~Wai~sl~Lq~~~~~ 171 (1011)
.++...|++++|..+|+.+.+..+. |...+..+...|.+.|+++.|.+.+..|.+.... +.. .|+.+...+ ...+
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv-TynaLI~gy-~k~G- 521 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH-TFGALIDGC-ARAG- 521 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH-HHCc-
Confidence 9999999999999999999886543 4667788999999999999999999888875432 233 454443333 1222
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc---cCCChHHHHHHHHHHHHHcCCHH
Q 001799 172 GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGS---LLVIEVDKLRMQGRLLARQGDYT 248 (1011)
Q Consensus 172 ~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~---~~~~~~~~l~l~a~ll~klg~~e 248 (1011)
..++++.+...|. ..+-..+...+..++..|.+.|++++|.++++..... ..|+ ...+......|.+.|+++
T Consensus 522 ~~eeAl~lf~~M~----~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 522 QVAKAFGAYGIMR----SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVD 596 (1060)
T ss_pred CHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHH
Confidence 2234444444444 3332356778888899999999999999999987531 1233 333555567899999999
Q ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHhcc
Q 001799 249 AAAQIYKKILELS-PDDWECFLHYLGCLLED 278 (1011)
Q Consensus 249 eA~~~~~kaL~~n-PDdw~~~~~yl~all~~ 278 (1011)
+|.++|+++.+.+ +.+...|..++.++.+.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 9999999999976 45677888788777654
No 54
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=2.8e-08 Score=108.19 Aligned_cols=239 Identities=18% Similarity=0.139 Sum_probs=185.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
.-.+++-+.|.++|+.++-.+++.+|...++..-.|..+-+.|..|.|+.+=+..++ ..|.+...-..+++.||.=|.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~--spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE--SPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHH
Confidence 334678889999999999999999999999999999999999999999998664322 111112223456778899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhcCCcHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWA--VCSIQLQVLCGNGGEK 175 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wa--i~sl~Lq~~~~~~a~k 175 (1011)
..|=+|.|..+|...+...---+++..+|..+|-...+|++|..+|.++.+..|++-..--+ -+-+..+... ..
T Consensus 119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~----~~ 194 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA----SS 194 (389)
T ss_pred HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh----hh
Confidence 99999999999998875444446688899999999999999999999999999874210001 1222222221 12
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCC-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 176 LLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVI-EVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 176 lL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~-~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
-.+.|...++|+.+.+| ....+-+.+++|...+|+|+.|++.++..+.+ .|. -+..+..+..+|.++|+.++....+
T Consensus 195 ~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 195 DVDRARELLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hHHHHHHHHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 24457778888888888 77888899999999999999999999999865 443 2345666678999999999999999
Q ss_pred HHHHHhCCCC
Q 001799 255 KKILELSPDD 264 (1011)
Q Consensus 255 ~kaL~~nPDd 264 (1011)
+++.+.++..
T Consensus 273 ~~~~~~~~g~ 282 (389)
T COG2956 273 RRAMETNTGA 282 (389)
T ss_pred HHHHHccCCc
Confidence 9999987654
No 55
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.14 E-value=8.5e-10 Score=110.56 Aligned_cols=126 Identities=10% Similarity=-0.115 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001799 28 FKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATS 107 (1011)
Q Consensus 28 ~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~ 107 (1011)
+|--..+++++++.+|++ ....|.++.+.|++++|+..+++++.. .|.+..++..+|.++...|++++|+.
T Consensus 9 ~~~~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 9 NKIPEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred cCCHHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 344556889999999986 335799999999999999999998764 68999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001799 108 CYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSI 163 (1011)
Q Consensus 108 ~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl 163 (1011)
.|++|++.+|++.+++.+++.++.+.|++.+|...+.+..+..|+++. +|...+.
T Consensus 80 ~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~-~~~~~~~ 134 (144)
T PRK15359 80 FYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS-WSEIRQN 134 (144)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHH
Confidence 999999999999999999999999999999999999999999999875 4544333
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.1e-08 Score=115.62 Aligned_cols=227 Identities=13% Similarity=0.069 Sum_probs=176.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHH-------HHH---------------------------HHHHHHCCChHHHHH
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYAL-------ALK---------------------------ALVLERMGKCDESLS 67 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~-------aLK---------------------------A~aL~rlgk~dEAl~ 67 (1011)
.+.+.+|++|+..++.+.|.+|-...-. +.| |.-+.-.++.+.|+.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 4578899999999999999999553211 111 111112367899999
Q ss_pred HHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 68 VSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 68 l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
.++.++.+ +|+-..+|.++|.=|.++++...|+..|++|++.+|.|..+|++++++|.-.+...-|.-.+.+..
T Consensus 352 YFkRALkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 352 YFKRALKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 99999876 688899999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-
Q 001799 148 KHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSL- 226 (1011)
Q Consensus 148 K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~- 226 (1011)
+..|+++- .|.+++-.+...+. +..|.+-.++++.... .+..++..++.++++.+++++|..++.+.+..-
T Consensus 426 ~~kPnDsR-lw~aLG~CY~kl~~------~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 426 ELKPNDSR-LWVALGECYEKLNR------LEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred hcCCCchH-HHHHHHHHHHHhcc------HHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 88999887 78777765432221 3456666666666554 356789999999999999999999988765310
Q ss_pred ----CCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001799 227 ----LVI-EVDKLRMQGRLLARQGDYTAAAQIYKKILELSP 262 (1011)
Q Consensus 227 ----~~~-~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nP 262 (1011)
..+ -......+|..+.+.++|++|..++..++.-++
T Consensus 498 ~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 498 LEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred hhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 222 223333468889999999999999988887643
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=7.2e-09 Score=117.55 Aligned_cols=226 Identities=12% Similarity=0.037 Sum_probs=171.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
.|-.|++..|...++++++.+|.+.-.+..+|.++...++.++-...+.+|.++ .|.++++++..|+++.-+++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------dp~n~dvYyHRgQm~flL~q 409 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------DPENPDVYYHRGQMRFLLQQ 409 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc------CCCCCchhHhHHHHHHHHHH
Confidence 466789999999999999999988888888999999999999999999988775 68888999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAE 181 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAe 181 (1011)
|++|++-|++|+.++|+|.=.+.++.-+..|.+.+.+..+.+....+.||+-+. ..+.++-+| . .+.-++-|.
T Consensus 410 ~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E-vy~~fAeiL---t---DqqqFd~A~ 482 (606)
T KOG0547|consen 410 YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE-VYNLFAEIL---T---DQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-HHHHHHHHH---h---hHHhHHHHH
Confidence 999999999999999998877778888888888888888888888899998763 112233333 1 122356677
Q ss_pred HHHHHHHhcCCC-----CCHHHHHHHHH-HHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001799 182 GLLKKHVASHSL-----HEPEALIVYIS-ILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYK 255 (1011)
Q Consensus 182 k~Lekai~~~p~-----~~~eel~l~~~-IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~ 255 (1011)
++.++++...|- -+..-+...+. ++.=.+++..|++++.+++. ..|.......-+|.+....|+.++|+++|+
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e-~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE-LDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc-cCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777776652 13333333332 22234788899999999874 355444445557888888999999999999
Q ss_pred HHHHhC
Q 001799 256 KILELS 261 (1011)
Q Consensus 256 kaL~~n 261 (1011)
+.+.+.
T Consensus 562 ksa~lA 567 (606)
T KOG0547|consen 562 KSAQLA 567 (606)
T ss_pred HHHHHH
Confidence 887653
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.7e-09 Score=120.88 Aligned_cols=202 Identities=14% Similarity=0.096 Sum_probs=170.2
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
.++...-+++..|..+-.+.++++.+.+|+++..++.+|.+++-++++++|++-+++++.+ .|.+.-++..++.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L------~pe~~~~~iQl~~ 436 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL------DPENAYAYIQLCC 436 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc------ChhhhHHHHHHHH
Confidence 3444556789999999999999999999999999999999999999999999999999886 6888899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGE 174 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~ 174 (1011)
++.+.++++++.+.|+.+.++.|+-+|.+.-.+++....++|.+|.+.+.+...+.|...-.+.+++-++.++.-.-...
T Consensus 437 a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk 516 (606)
T KOG0547|consen 437 ALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh
Confidence 99999999999999999999999999999989999999999999999999999999973211111111111110000012
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 001799 175 KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL 223 (1011)
Q Consensus 175 klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l 223 (1011)
+-+..|..++.|+++.+| +...+..-++++..++|+.+||+++++...
T Consensus 517 ~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDP-KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 347789999999999999 888999999999999999999999999885
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=1.2e-06 Score=104.68 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001799 198 ALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 266 (1011)
Q Consensus 198 el~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~ 266 (1011)
.++++++.+...|++++|+++++.++.. -|..++.+..+|++|.+.|++.+|.+.+..+-.+++.|--
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH
Confidence 3466689999999999999999999865 7788899999999999999999999999999999887643
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=1.7e-08 Score=112.88 Aligned_cols=239 Identities=14% Similarity=0.109 Sum_probs=188.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDL 104 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~e 104 (1011)
.++|.+|.++++.++..+--++.++..+|.+.+..|++++|.+.|++++. . ...=.++++.+|..+..+|+.++
T Consensus 469 gk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~---n---dasc~ealfniglt~e~~~~lde 542 (840)
T KOG2003|consen 469 GKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN---N---DASCTEALFNIGLTAEALGNLDE 542 (840)
T ss_pred ccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc---C---chHHHHHHHHhcccHHHhcCHHH
Confidence 56788999999999999999999999999999999999999999998843 2 23456789999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001799 105 ATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLL 184 (1011)
Q Consensus 105 A~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~L 184 (1011)
|+.+|-+...+--+|.+++++++..|-...+...|....++.....|++|. ...-++-++- ..+ +..+++...+...
T Consensus 543 ald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~-ilskl~dlyd-qeg-dksqafq~~ydsy 619 (840)
T KOG2003|consen 543 ALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA-ILSKLADLYD-QEG-DKSQAFQCHYDSY 619 (840)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH-HHHHHHHHhh-ccc-chhhhhhhhhhcc
Confidence 999999988888899999999999999999999999998988888999986 3333333221 111 1223343332222
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 185 KKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 185 ekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
. --| -+.+.+..++..|....-+++|+.+++++. ...|....+..+.|.++.+.|+|+.|++.|+..-..-|.|
T Consensus 620 r----yfp-~nie~iewl~ayyidtqf~ekai~y~ekaa-liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 620 R----YFP-CNIETIEWLAAYYIDTQFSEKAINYFEKAA-LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED 693 (840)
T ss_pred c----ccC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc
Confidence 1 123 456667777777887778899999999984 2246666777778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 001799 265 WECFLHYLGCLLED 278 (1011)
Q Consensus 265 w~~~~~yl~all~~ 278 (1011)
.+++..+...+-..
T Consensus 694 ldclkflvri~~dl 707 (840)
T KOG2003|consen 694 LDCLKFLVRIAGDL 707 (840)
T ss_pred hHHHHHHHHHhccc
Confidence 99998777665443
No 61
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.05 E-value=9.7e-07 Score=113.78 Aligned_cols=245 Identities=11% Similarity=0.018 Sum_probs=163.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 20 WDAIDSRQFKNALKQSTALLAKYPN-SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 20 ~dald~gn~KqAL~l~dklLKk~P~-~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
.-+...|+++.|.+.++++.+.... +...+.....++.+.|+.++|..++++..+. . ...|..+|..+...|..
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~----G-v~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA----G-VEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHH
Confidence 3446789999999999998877533 3455566666778899999999988875332 1 23378889999999999
Q ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----cCCcHHHHHHHHHHHHHHhcCCc
Q 001799 99 LDRLDLATSCYEYACGK--YHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKH----AGEERFLLWAVCSIQLQVLCGNG 172 (1011)
Q Consensus 99 lg~~~eA~~~YekAlk~--~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~----~P~~ry~~Wai~sl~Lq~~~~~~ 172 (1011)
.|++++|..+|+...+. .|+ ...+..+...|.+.|++++|.+....|.+. .|+... +-.++..+. ..+ .
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT-ynaLI~ay~--k~G-~ 594 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT-VGALMKACA--NAG-Q 594 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH-HHHHHHHHH--HCC-C
Confidence 99999999999888664 465 567778889999999999998888888653 354321 222222222 222 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001799 173 GEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQ 252 (1011)
Q Consensus 173 a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~ 252 (1011)
.+++..+...| .+.+...+...+..++..|.+.|++++|+++++.........+...+......+.+.|++++|.+
T Consensus 595 ldeA~elf~~M----~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 595 VDRAKEVYQMI----HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HHHHHHHHHHH----HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 22333333333 33332245566777778888888888888888877533222223334455567778888888888
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHhcc
Q 001799 253 IYKKILELS-PDDWECFLHYLGCLLED 278 (1011)
Q Consensus 253 ~~~kaL~~n-PDdw~~~~~yl~all~~ 278 (1011)
+++++.+.+ +-|...|..++.++.+.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 888888764 33566677777777654
No 62
>PLN03077 Protein ECB2; Provisional
Probab=99.04 E-value=3.4e-06 Score=108.16 Aligned_cols=424 Identities=11% Similarity=0.035 Sum_probs=221.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC------------------
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL------------------ 83 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P------------------ 83 (1011)
+...|+...|.+.+++.-. | +...+......+.+.|++++|+.++.+.... ...|
T Consensus 131 ~~~~g~~~~A~~~f~~m~~--~-d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~----g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 131 FVRFGELVHAWYVFGKMPE--R-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWA----GVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHhCCChHHHHHHHhcCCC--C-CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCChhHHHHHHHHhCCccch
Confidence 3567888888887777643 2 3455556666677788888888877764321 1122
Q ss_pred ----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 84 ----------------MDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 84 ----------------~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
.|..++..|-..|...|++++|..+|++... | |...+..+...|.+.|++.+|.+.+.+|.
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--R-DCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--C-CcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2445556666677777777777777776532 2 23456667777777777777777777766
Q ss_pred HH--cCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Q 001799 148 KH--AGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGS 225 (1011)
Q Consensus 148 K~--~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~ 225 (1011)
+. .|+... +-.++...- ..+. +..+.++........-..+......++..|.+.|++++|.++++....
T Consensus 281 ~~g~~Pd~~t-y~~ll~a~~--~~g~-----~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~- 351 (857)
T PLN03077 281 ELSVDPDLMT-ITSVISACE--LLGD-----ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET- 351 (857)
T ss_pred HcCCCCChhH-HHHHHHHHH--hcCC-----hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-
Confidence 54 344332 112221111 1111 223333333333333223555666677888888888888888887632
Q ss_pred cCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCccccccCCCCCCCCCCcccccccC
Q 001799 226 LLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS--PDDWECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSH 303 (1011)
Q Consensus 226 ~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~n--PDdw~~~~~yl~all~~~~~w~~~~~~~~~~p~~~~~~~~~~ 303 (1011)
+ +...|......|.+.|++++|.++|++..+.+ ||... +..++.++...+
T Consensus 352 --~-d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g------------------------ 403 (857)
T PLN03077 352 --K-DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACACLG------------------------ 403 (857)
T ss_pred --C-CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHhccc------------------------
Confidence 2 22234455667788888888888888876643 66543 333444443321
Q ss_pred cchHhhhhcHHHHHHHHHHHHhccCCCCchhhHhhchhHHHHHhhhCCCCchHHHHHHHHHHHHcCCc--cccHHhHHHH
Q 001799 304 LTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSFGHL--ACFTSDVEDF 381 (1011)
Q Consensus 304 l~~e~~~~~i~ea~~fi~~l~~~~~~~~~Rgp~LA~LEL~~r~~~~G~~d~~~l~~~l~~Y~~kfg~K--~cCf~DLk~Y 381 (1011)
.++++.++.+...+. +.......+=+.+.... ..|. .+.....|++...+ .+.-.=+..|
T Consensus 404 --------~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~---k~g~------~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 404 --------DLDVGVKLHELAERK-GLISYVVVANALIEMYS---KCKC------IDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred --------hHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHH---HcCC------HHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 133555555554432 11111111222222221 1121 12222333444333 1222223334
Q ss_pred HhcCCHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCccc
Q 001799 382 LLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQE 461 (1011)
Q Consensus 382 l~~L~~e~~~~~l~~l~~~~~~~~~~~~k~l~~~I~~~Kl~r~lg~~~~~~~~~~~~~~~~l~~~Y~~~l~l~~dl~~tE 461 (1011)
...-..++...+...+...... +.......|.+ +..... .....++ +...++.+-.++
T Consensus 466 ~~~g~~~eA~~lf~~m~~~~~p----d~~t~~~lL~a---------~~~~g~---l~~~~~i---~~~~~~~g~~~~--- 523 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLLTLKP----NSVTLIAALSA---------CARIGA---LMCGKEI---HAHVLRTGIGFD--- 523 (857)
T ss_pred HHCCCHHHHHHHHHHHHhCCCC----CHhHHHHHHHH---------Hhhhch---HHHhHHH---HHHHHHhCCCcc---
Confidence 4333344555555555432111 11111111111 111110 0011122 222221111111
Q ss_pred ccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHhhcCCCchhHHHHHHHHHHHcCChHHHHHHHHhcchhhhhhh
Q 001799 462 SIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLAYEWYKALDVKNILME 541 (1011)
Q Consensus 462 ~qp~Del~LLAa~~Ll~l~~~~~~~~~L~~Ai~LLE~~L~~SP~n~~lkLlLvrLY~~LGa~s~A~~~y~~LdvK~IQ~D 541 (1011)
....+.|++.|.+.++ +.+|..+.+.. +.|...--.++..|...|....|.++|+.+.-+.+.-|
T Consensus 524 --------~~~~naLi~~y~k~G~---~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 524 --------GFLPNALLDLYVRCGR---MNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred --------ceechHHHHHHHHcCC---HHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 1223678888876554 45666666654 45666666788899999999999999998877777778
Q ss_pred hhhhhh
Q 001799 542 TVSHHI 547 (1011)
Q Consensus 542 TLghll 547 (1011)
...|..
T Consensus 589 ~~T~~~ 594 (857)
T PLN03077 589 EVTFIS 594 (857)
T ss_pred cccHHH
Confidence 777764
No 63
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.04 E-value=2.2e-08 Score=124.46 Aligned_cols=221 Identities=14% Similarity=0.008 Sum_probs=148.3
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCC----------
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQND---------- 80 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~---------- 80 (1011)
-++-+.+-|..+.+.+++++|++.|+..++.+|+...+++..|.++++.+++++|..+ .+++....+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 3444455555566999999999999999999999999999999999999999998776 5544422110
Q ss_pred ---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH---
Q 001799 81 ---STLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER--- 154 (1011)
Q Consensus 81 ---~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r--- 154 (1011)
..+.+..++..||.||..+|++++|.+.|+++++.+|+|..++.+++-.|... |.++|.+.+.+..+.+=+.+
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~ 186 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV 186 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence 01233389999999999999999999999999999999999999999999998 99999998888776543322
Q ss_pred --HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHH
Q 001799 155 --FLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVD 232 (1011)
Q Consensus 155 --y~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~ 232 (1011)
..+|.-+... .+.+. ..+-..++.+.+..... .-.+-+.-+..-|...++|++++.+|...+.. .+.+..
T Consensus 187 ~~~e~W~k~~~~----~~~d~-d~f~~i~~ki~~~~~~~--~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~-~~~n~~ 258 (906)
T PRK14720 187 GIEEIWSKLVHY----NSDDF-DFFLRIERKVLGHREFT--RLVGLLEDLYEPYKALEDWDEVIYILKKILEH-DNKNNK 258 (906)
T ss_pred HHHHHHHHHHhc----Ccccc-hHHHHHHHHHHhhhccc--hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc-CCcchh
Confidence 2235332211 11111 11222222222211111 22334444445556666777777777777643 444443
Q ss_pred HHHHHHHHHH
Q 001799 233 KLRMQGRLLA 242 (1011)
Q Consensus 233 ~l~l~a~ll~ 242 (1011)
..+-.+.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 3444455554
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.04 E-value=4.7e-09 Score=105.21 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=100.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
..+.++..|++.+|+..+++++..+|++..++..+|.++.++|++++|+..+.+++++ .|.|+.++..+|.++.
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHHHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999775 6899999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYV 131 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayv 131 (1011)
.+|++++|++.|++|++..|++.+.+...+.+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 9999999999999999999999988876665543
No 65
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=5.8e-09 Score=110.20 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=115.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH-HHcCC-
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF-QRLDR- 101 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~-~~lg~- 101 (1011)
..++..+++..++++++.+|+++.++...|.++...|++++|+..+++++.+ .|.+..++..+|.++ ...|+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l------~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL------RGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCCC
Confidence 3577799999999999999999999999999999999999999999999876 689999999999974 77787
Q ss_pred -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc
Q 001799 102 -LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE 153 (1011)
Q Consensus 102 -~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ 153 (1011)
+++|..+++++++.+|++.+++..++..+.+.|+|++|.....++.+..|.+
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5999999999999999999999999999999999999999999999888753
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.02 E-value=1.4e-07 Score=107.60 Aligned_cols=246 Identities=13% Similarity=-0.007 Sum_probs=143.1
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHH
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLS 90 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~ 90 (1011)
..|+..-....++..|++++|++.++++++.+|++..++.. +..++.+|...++.....++++.. ....|.+..++.
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~ 118 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLG 118 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHH
Confidence 34556666778889999999999999999999999866654 555555444443333333332211 112455555566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER----FLLWAVCSIQLQ 166 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r----y~~Wai~sl~Lq 166 (1011)
.++.++...|++++|...++++++.+|++..++..++.++.+.|++++|...+.+..+..|.++ ..+|....++++
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 6666777777777777777777777777666666666777777777777666666665554322 111222122211
Q ss_pred HhcCCcHHHH-----------------------------------HHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHc
Q 001799 167 VLCGNGGEKL-----------------------------------LLLAEGLLKKHVAS--HSLHEPEALIVYISILEQQ 209 (1011)
Q Consensus 167 ~~~~~~a~kl-----------------------------------L~LAek~Lekai~~--~p~~~~eel~l~~~IL~~q 209 (1011)
..+.+.+... ......+....... .++ .......++.++..+
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 277 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHG-LAFNDLHAALALAGA 277 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCccc-chHHHHHHHHHHhcC
Confidence 0000000000 00000011110010 011 112223577888899
Q ss_pred CChHHHHHHHHhhhcccCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 210 SKYGDALEILSGTLGSLLV--------IEVDKLRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 210 gk~eEAL~~L~~~l~~~~~--------~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
|+.++|...++........ ..+....++|.++...|++++|.+.+..++..
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999876432111 12344566788889999999999999999976
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=1.3e-08 Score=110.42 Aligned_cols=231 Identities=16% Similarity=0.124 Sum_probs=152.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
++.-|-+..|.+.+...|+..| ++....+.+.+|.+.+++..|+.++.+.++. .|.|...+.-++.++..+++
T Consensus 233 ylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHHHHHHHh
Confidence 4566777777777777777655 5666777777777777777777777776553 57777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHH--HHHHHHHhcCCcHHHHHHH
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAV--CSIQLQVLCGNGGEKLLLL 179 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai--~sl~Lq~~~~~~a~klL~L 179 (1011)
+++|.++|+.+++.+|.|.|+....+..|.-.++.+-|...+.+++..--.++..|.++ ++++-|.. +..++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~-----D~~L~s 380 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI-----DLVLPS 380 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch-----hhhHHH
Confidence 77777777777777777777766666666667777777777777766666666444432 22222211 223444
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 180 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 259 (1011)
Q Consensus 180 Aek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~ 259 (1011)
.++.+..+- .|-+..+.|+.++.|...-|++.-|-..+.-++.. .++..+.+..+|.+-.+.|+.++|..++..+-.
T Consensus 381 f~RAlstat--~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~-d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTAT--QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS-DAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhcc--CcchhhhhhhccceeEEeccchHHHHHHHHHHhcc-CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 444443322 22245667777777777777777777777777643 555666667777777777777777777777777
Q ss_pred hCCCCHHH
Q 001799 260 LSPDDWEC 267 (1011)
Q Consensus 260 ~nPDdw~~ 267 (1011)
.+|+-++.
T Consensus 458 ~~P~m~E~ 465 (478)
T KOG1129|consen 458 VMPDMAEV 465 (478)
T ss_pred hCcccccc
Confidence 77764443
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=5.6e-08 Score=110.86 Aligned_cols=208 Identities=14% Similarity=0.081 Sum_probs=149.4
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001799 42 YPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMD 121 (1011)
Q Consensus 42 ~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~e 121 (1011)
+|+++.++..+|.++...|++++|...+.++....+ ..++..+.....+.++...|++++|.+.++++++.+|++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~ 78 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALA---ARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL 78 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence 799999999999999999999998877777655432 24456677888899999999999999999999999999987
Q ss_pred HHHHHHHHHHH----hcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHH
Q 001799 122 HMMGLFNCYVR----EYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPE 197 (1011)
Q Consensus 122 l~~~Lf~ayvr----~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~e 197 (1011)
++.. ...+.. .+....+.+.........|...+ .+...+..+. ..+. +..|...++++++..| ++..
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~a~~~~-~~G~-----~~~A~~~~~~al~~~p-~~~~ 149 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWY-LLGMLAFGLE-EAGQ-----YDRAEEAARRALELNP-DDAW 149 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHH-HHHHHHHHHH-HcCC-----HHHHHHHHHHHHhhCC-CCcH
Confidence 6553 333333 34444443332221122233322 2333333332 2222 4567777777777788 6777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001799 198 ALIVYISILEQQSKYGDALEILSGTLGSLLVIE----VDKLRMQGRLLARQGDYTAAAQIYKKILELSP 262 (1011)
Q Consensus 198 el~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~----~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nP 262 (1011)
....++.++..+|++++|+.++++.+.. .+.. ...+...|.++...|++++|...|++++...|
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~-~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDT-WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhc-cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 8889999999999999999999998753 3321 22345678999999999999999999987665
No 69
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4.1e-08 Score=113.95 Aligned_cols=234 Identities=10% Similarity=0.042 Sum_probs=184.1
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
-+..-..++++|...+|.=+++.+++++|.+..++.+.|.+....++-..|+..+++++++ .|++.+++..|+.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L------dP~NleaLmaLAV 361 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL------DPTNLEALMALAV 361 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc------CCccHHHHHHHHH
Confidence 3677788999999999999999999999999999999999999999999999999999886 6999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHH---HHHHhcCHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMM----GLFN---CYVREYSFVKQQQTAIKMYKHAGE--ERFLLWAVCSIQL 165 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~----~Lf~---ayvr~~d~~~Aqq~a~kL~K~~P~--~ry~~Wai~sl~L 165 (1011)
.|...|.-.+|++++.+.++-.|.-.-+.. ..|. .......+...++.+..+....|. ++. .-.++++++
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd-vQ~~LGVLy 440 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD-VQSGLGVLY 440 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh-HHhhhHHHH
Confidence 999999999999999999998875211110 0110 111222344556666777777773 443 345556554
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcC
Q 001799 166 QVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQG 245 (1011)
Q Consensus 166 q~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg 245 (1011)
- ..+ -++.|...++.++..+| .+.--|..|+-.|..-.+.+||+..+.+++. +.|.-+...|.+|-.++.+|
T Consensus 441 ~-ls~-----efdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-LqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 441 N-LSG-----EFDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQ-LQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred h-cch-----HHHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHh-cCCCeeeeehhhhhhhhhhh
Confidence 1 111 14555566666677888 7888999999999999999999999999985 46766666788899999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 001799 246 DYTAAAQIYKKILELSPD 263 (1011)
Q Consensus 246 ~~eeA~~~~~kaL~~nPD 263 (1011)
.|.||..++-.+|.+.+.
T Consensus 513 ~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hHHHHHHHHHHHHHhhhc
Confidence 999999999999987544
No 70
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=4e-09 Score=114.41 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
.+-.++...++|.+|+..|+++|+.+|+++.++..||.+|.++|.++.|++-|+.++.+ .|....+|..||.+|
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999999999999775 689999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLF 127 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf 127 (1011)
..+|++++|+..|++|+.++|+|+.+...|-
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 9999999999999999999999986554443
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.8e-07 Score=106.37 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=101.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
+.-..++..|+|+.|+.++..++..+|.++..+..+..++..+|++++|+.-..+.+++ .|.-+..|..+|-.+
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l------~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL------NPDWAKGYSRKGAAL 80 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc------CCchhhHHHHhHHHH
Confidence 44567899999999999999999999999999999999999999999999998888776 688899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYV 131 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayv 131 (1011)
..+|+|++|+..|...++.+|+|..+..++.+++.
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~ 115 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYL 115 (539)
T ss_pred HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhh
Confidence 99999999999999999999999999999998883
No 72
>PLN02789 farnesyltranstransferase
Probab=98.93 E-value=1.5e-07 Score=106.54 Aligned_cols=221 Identities=11% Similarity=0.028 Sum_probs=169.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC-CHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD-RLD 103 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg-~~~ 103 (1011)
.++|++|...+.+++++ .++.++|+.++.+++++ .|.+..+|+..+.++..+| +++
T Consensus 33 ~~~~~~a~~~~ra~l~~-----------------~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~ 89 (320)
T PLN02789 33 TPEFREAMDYFRAVYAS-----------------DERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLE 89 (320)
T ss_pred CHHHHHHHHHHHHHHHc-----------------CCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHH
Confidence 44666666666666655 45677888888888775 6999999999999999999 689
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 001799 104 LATSCYEYACGKYHNNMDHMMGLFNCYVREYSF--VKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAE 181 (1011)
Q Consensus 104 eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~--~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAe 181 (1011)
+++..++++++.+|+|.+++.+...++.+.++. .++.....++...+|++-. .|.-.+.+++... .+..+.
T Consensus 90 eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~-AW~~R~w~l~~l~------~~~eeL 162 (320)
T PLN02789 90 EELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH-AWSHRQWVLRTLG------GWEDEL 162 (320)
T ss_pred HHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHhh------hHHHHH
Confidence 999999999999999999998777777666763 5667777788899998854 7766666554321 133455
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCh----HHHHHHHHhhhcccCCChHHHHHHHHHHHHH----cCCHHHH
Q 001799 182 GLLKKHVASHSLHEPEALIVYISILEQQ---SKY----GDALEILSGTLGSLLVIEVDKLRMQGRLLAR----QGDYTAA 250 (1011)
Q Consensus 182 k~Lekai~~~p~~~~eel~l~~~IL~~q---gk~----eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~k----lg~~eeA 250 (1011)
..++++++.++ .+..++...+.++... |++ ++++++....+.. .|.+...|..++.++.. +++..+|
T Consensus 163 ~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~ 240 (320)
T PLN02789 163 EYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEV 240 (320)
T ss_pred HHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhH
Confidence 55566666777 7888999999888765 333 4688888888754 67766666666667766 5677889
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 251 AQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 251 ~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
...|.+++..+|....++..+++.+.+
T Consensus 241 ~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 241 SSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 999999999999999998888887765
No 73
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.92 E-value=7.2e-07 Score=108.02 Aligned_cols=195 Identities=10% Similarity=0.049 Sum_probs=149.1
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 50 ALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNC 129 (1011)
Q Consensus 50 aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~a 129 (1011)
.-.|..++..|++++|..+|.+++.. .|..+.++++||.+|...|+.+++...+-.|...+|++.+.|..|+..
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkq------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQ------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 33455567789999999999998765 688999999999999999999999999999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHH
Q 001799 130 YVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLH----EPEALIVYISI 205 (1011)
Q Consensus 130 yvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~----~~eel~l~~~I 205 (1011)
....|++..|.-.+.+..+..|.+..+.|.-..++.+. |. ...+..-..++ .+..|.. ..+....+++.
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~--G~-~~~Am~~f~~l----~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT--GD-LKRAMETFLQL----LQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh--Ch-HHHHHHHHHHH----HhhCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999987688777766532 21 11222222333 3444411 23455666788
Q ss_pred HHHcCChHHHHHHHHhhhcccCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 206 LEQQSKYGDALEILSGTLGSLLV--IEVDKLRMQGRLLARQGDYTAAAQIYKKIL 258 (1011)
Q Consensus 206 L~~qgk~eEAL~~L~~~l~~~~~--~~~~~l~l~a~ll~klg~~eeA~~~~~kaL 258 (1011)
+...++-+.|++.+++++.. .. ....-+.+.+.++.+..+|+.|.......-
T Consensus 290 ~~~~~~~e~a~~~le~~~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 88888889999999998752 11 122336677888998888888876554443
No 74
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.91 E-value=7.9e-07 Score=103.99 Aligned_cols=248 Identities=13% Similarity=0.045 Sum_probs=199.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
+.........+-++-|...|..+|+.+|..--.+...+..--..|..++-.++++++++. .|.-+..|.+++.-
T Consensus 520 ~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~------~pkae~lwlM~ake 593 (913)
T KOG0495|consen 520 LDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ------CPKAEILWLMYAKE 593 (913)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCcchhHHHHHHHH
Confidence 445556667788888999999999999998887777777777789999988999998764 57777888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEK 175 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~k 175 (1011)
+-..|+...|..+...|+..+|+++++++..+..-.+..+++.|...+.+.....|..|. |.-...+.....
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv--~mKs~~~er~ld------ 665 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERV--WMKSANLERYLD------ 665 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchh--hHHHhHHHHHhh------
Confidence 888899999999999999999999999999999999999999998877666666676663 333222221111
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001799 176 LLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYK 255 (1011)
Q Consensus 176 lL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~ 255 (1011)
....|.++++++++.-| ...--++++++|++++++.+.|.+.+...+.. .|..+-.|.+++.+-.+.|..-.|...+.
T Consensus 666 ~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ild 743 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILD 743 (913)
T ss_pred hHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence 13456666666666666 56678888999999999999999999888754 88888788888999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHhccC
Q 001799 256 KILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 256 kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
++.-.||+|...|...+..=+..+
T Consensus 744 rarlkNPk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 744 RARLKNPKNALLWLESIRMELRAG 767 (913)
T ss_pred HHHhcCCCcchhHHHHHHHHHHcC
Confidence 999999999999987776544433
No 75
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.90 E-value=2.3e-08 Score=97.87 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=106.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001799 33 KQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYA 112 (1011)
Q Consensus 33 ~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekA 112 (1011)
..+++++..+|++..+....|..+.+.|++++|...+++++.. .|.++.++..+|.++...|++++|...|+++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999887654 5888999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 113 CGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 113 lk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
++.+|.+.+.++.++.+|...|++.+|.+.+.+..+..|++..
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999998888753
No 76
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.87 E-value=6.6e-05 Score=88.42 Aligned_cols=241 Identities=10% Similarity=-0.006 Sum_probs=189.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYP---NSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P---~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
++..-++=+.|..-.+...+..++-..- +.-..+.--+..+.+.+-++=|.++|..++.. .|.+...|...
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv------fp~k~slWlra 556 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV------FPCKKSLWLRA 556 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh------ccchhHHHHHH
Confidence 4444444455555555444444444432 22335566677778888899999999888664 68899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCc
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNG 172 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~ 172 (1011)
..+-..-|..++-.+++++|+...|+.+.+++..+..+-..||...|..+..+.+..+|++-. .|....-+. ..+..
T Consensus 557 ~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee-iwlaavKle-~en~e- 633 (913)
T KOG0495|consen 557 AMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE-IWLAAVKLE-FENDE- 633 (913)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH-HHHHHHHHh-hcccc-
Confidence 999999999999999999999999999999999999999999999999999999999999766 564332221 12211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHH
Q 001799 173 GEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQ 252 (1011)
Q Consensus 173 a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~ 252 (1011)
+..|.+++.|+....| ++..++-++.+...+++.+||+.+++..+.. .|+-...+.++|.++...++.+.|.+
T Consensus 634 ----~eraR~llakar~~sg--TeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 634 ----LERARDLLAKARSISG--TERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred ----HHHHHHHHHHHhccCC--cchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566677776666554 6778888889999999999999999999976 88888889999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHH
Q 001799 253 IYKKILELSPDDWECFLHYL 272 (1011)
Q Consensus 253 ~~~kaL~~nPDdw~~~~~yl 272 (1011)
.|...+...|...-.|..+.
T Consensus 707 aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred HHHhccccCCCCchHHHHHH
Confidence 99999999999999997554
No 77
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=3.3e-07 Score=102.72 Aligned_cols=208 Identities=16% Similarity=0.169 Sum_probs=164.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
++-+|++++|...|..+|..+.....+++.-|+.+..+|+.++|++.+-+.-.++. ++.+++..++.+|..+.+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~led 573 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLED 573 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhC
Confidence 56789999999999999999888889999999999999999999999887655543 678999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHhcCCcHHHHHHHH
Q 001799 102 LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER-FLLWAVCSIQLQVLCGNGGEKLLLLA 180 (1011)
Q Consensus 102 ~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r-y~~Wai~sl~Lq~~~~~~a~klL~LA 180 (1011)
+.+|++.|-++...-|+++.++..|+..|-+.||-..|-|..-.-|+-||-+- ..-|.. +.++. .++...+
T Consensus 574 ~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~-ayyid-------tqf~eka 645 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA-AYYID-------TQFSEKA 645 (840)
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH-HHHHh-------hHHHHHH
Confidence 99999999999999999999999999999999999999888777788999875 334632 22221 1223345
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcC
Q 001799 181 EGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQG 245 (1011)
Q Consensus 181 ek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg 245 (1011)
...++|+.-..| ....-.++.+..+.+.|+|++|++.+...-.. .|.+++-+..+-++.-.+|
T Consensus 646 i~y~ekaaliqp-~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 646 INYFEKAALIQP-NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHhcCc-cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 556666655565 23333445568899999999999999987643 7877776655555554444
No 78
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.85 E-value=8e-07 Score=111.31 Aligned_cols=220 Identities=14% Similarity=0.101 Sum_probs=132.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
|.-+...|++++|.+.+++.. +.+...+......+.+.|+.++|+.++++..+. . ..-|..++..+..++..
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g-~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS----G-VSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHh
Confidence 444567888888888888763 335566777777788888888888888764321 1 22366788888888888
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHH
Q 001799 99 LDRLDLATSCYEYACGKY-HNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 99 lg~~~eA~~~YekAlk~~-P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL 177 (1011)
.|++++|..+++.+++.. +.|..++..+...|.+.|++++|.+.+.++.+ |+. . -|+.+...+ ...+ ..++++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~-~-t~n~lI~~y-~~~G-~~~~A~ 411 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNL-I-SWNALIAGY-GNHG-RGTKAV 411 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCe-e-eHHHHHHHH-HHcC-CHHHHH
Confidence 888888888888888765 44566777888888888888888877666542 322 2 354444433 1222 223444
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-cCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 178 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGS-LLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 256 (1011)
Q Consensus 178 ~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~-~~~~~~~~l~l~a~ll~klg~~eeA~~~~~k 256 (1011)
.+.++|.+. +-..+...+..+...+...|+.++|.++++..... ....+...+.....+|.+.|+.++|.+.+++
T Consensus 412 ~lf~~M~~~----g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 412 EMFERMIAE----GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHHHHHHh----CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH
Confidence 444444432 21134444555555556666666666666555321 0111222233344555566666666555544
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=2.6e-07 Score=114.06 Aligned_cols=172 Identities=10% Similarity=0.057 Sum_probs=136.1
Q ss_pred HHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 001799 55 VLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREY 134 (1011)
Q Consensus 55 aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~ 134 (1011)
++-+.|....+.+.+-+++++.. ..|.+++++.+|+.+....|++++|...|+.++...|++..+...++....+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~ 134 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVR---RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ 134 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHH---hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc
Confidence 34444444444444444444333 268889999999999999999999999999999999999999999999999988
Q ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHH
Q 001799 135 SFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGD 214 (1011)
Q Consensus 135 d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eE 214 (1011)
.+++|...+.+++... | ++.+..+.++.++...|+|+|
T Consensus 135 ~~eeA~~~~~~~l~~~-----------------------------------------p-~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 135 GIEAGRAEIELYFSGG-----------------------------------------S-SSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred cHHHHHHHHHHHhhcC-----------------------------------------C-CCHHHHHHHHHHHHHhcchHH
Confidence 8888876655544333 3 455666777788889999999
Q ss_pred HHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001799 215 ALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYL 272 (1011)
Q Consensus 215 AL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl 272 (1011)
|.+++++.+.. .|+.++.+.-+|..+++.|+.++|...|+++++...+-...|..|+
T Consensus 173 A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 173 ADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 99999999863 6777888888999999999999999999999998877777766665
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.82 E-value=7e-08 Score=111.09 Aligned_cols=109 Identities=15% Similarity=0.085 Sum_probs=101.0
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
.......++..|+|..|+..++++++.+|+++.++..+|.++.++|++++|+..+++++++ .|.+..++..+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a~~~lg~ 78 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999876 6889999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNC 129 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~a 129 (1011)
+|..+|+|++|+..|+++++.+|++.++...+..+
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999876655444
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.80 E-value=7e-05 Score=88.49 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001799 200 IVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 263 (1011)
Q Consensus 200 ~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPD 263 (1011)
+.+++-+...|+++.|+.+++.+++. -|.-++.+..+|+++...|+.++|...+.++-+.+.-
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 34457777889999999999999875 6777787888999999999999999999999987533
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.79 E-value=1.1e-07 Score=117.34 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=96.7
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 16 VRPIWDAIDS-RQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 16 l~~I~dald~-gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
.++|.++-.. .....++..+....+.||+++.++.+.|.+..+.|+++||..+++.++++ .|.+..++..++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------~Pd~~~a~~~~a~ 128 (694)
T PRK15179 55 ARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR------FPDSSEAFILMLR 128 (694)
T ss_pred HHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------CCCcHHHHHHHHH
Confidence 3444433322 33444555566666777777777888888888888888888777777665 5777777777888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
++...+++++|+..+++++..+|+|.+....++.+..+.|++++|...+.++...+|+++.
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence 8888888888888888888888887777777778888888888887777777776676553
No 83
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=1.1e-06 Score=94.13 Aligned_cols=188 Identities=19% Similarity=0.090 Sum_probs=151.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD 100 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg 100 (1011)
..+...+...+...+-+...+.|++..+ +..+..+...|+-++++....++.. ..|+|...+..+|..+...|
T Consensus 42 ~~~~~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~------~~~~d~~ll~~~gk~~~~~g 114 (257)
T COG5010 42 SSLAMRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAI------AYPKDRELLAAQGKNQIRNG 114 (257)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhc------cCcccHHHHHHHHHHHHHhc
Confidence 4455555556776777777778999999 8889999999999999988877532 26899999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 001799 101 RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLA 180 (1011)
Q Consensus 101 ~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LA 180 (1011)
+|.+|+..+++|....|+|.+++..++.+|.+.|++..|...+.+..+.+|+++-.. +.+++.+ ..+++ +.-|
T Consensus 115 ~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~-nNlgms~-~L~gd-----~~~A 187 (257)
T COG5010 115 NFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA-NNLGMSL-LLRGD-----LEDA 187 (257)
T ss_pred chHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh-hhHHHHH-HHcCC-----HHHH
Confidence 999999999999999999999999999999999999999999999999999987422 2222222 12332 4456
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 001799 181 EGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL 223 (1011)
Q Consensus 181 ek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l 223 (1011)
++.+..+....+ .+......++.+...+|++++|.++....+
T Consensus 188 ~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 188 ETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 666666555444 677788889999999999999999988775
No 84
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.76 E-value=9e-06 Score=91.41 Aligned_cols=237 Identities=17% Similarity=0.080 Sum_probs=160.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH--HHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL--TLSTLQ 93 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~--al~~Lg 93 (1011)
+.+..-.+..|+|.+|.+++.+.-+-.+....++..-|.+-.++|+++.|-.++.++.+. |.|+. +....+
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~-------~~~~~l~v~ltra 160 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL-------AGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc-------CCCchHHHHHHHH
Confidence 345556678999999999999988877777778888888999999999999999887553 23333 455677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC--Cc---HHHHHHHHHHHHHHh
Q 001799 94 IVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAG--EE---RFLLWAVCSIQLQVL 168 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P--~~---ry~~Wai~sl~Lq~~ 168 (1011)
.++...|+++.|......+.+..|.++++..-...+|++.|+|...-...-+|.|..- +. ++..|+.-+++-|..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999999988777767766532 11 233444444443433
Q ss_pred cCCcHHH-------------------------H-----HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001799 169 CGNGGEK-------------------------L-----LLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEI 218 (1011)
Q Consensus 169 ~~~~a~k-------------------------l-----L~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~ 218 (1011)
+.++.+. + -..|.++++.+.+..- ++. +..++--+ .-+++..-++.
T Consensus 241 ~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--D~~-L~~~~~~l-~~~d~~~l~k~ 316 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--DPR-LCRLIPRL-RPGDPEPLIKA 316 (400)
T ss_pred ccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--Chh-HHHHHhhc-CCCCchHHHHH
Confidence 3221111 0 1233344433333221 111 22111111 23456666666
Q ss_pred HHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 219 LSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 219 L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
++..+.. .|.++..+..+|.++.+.+.|.+|..+++.+|+..|+.
T Consensus 317 ~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 317 AEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 6666654 66666667777777777777777777777777776663
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=9.9e-07 Score=92.82 Aligned_cols=205 Identities=20% Similarity=0.080 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001799 47 YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGL 126 (1011)
Q Consensus 47 ~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~L 126 (1011)
.++.-.|+-+.+.|++..|...++++++. +|++..+|..++.+|...|+.+.|-+.|++|++.+|+|-+++.+.
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEH------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 46677888899999999999999999765 699999999999999999999999999999999999999999988
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 001799 127 FNCYVREYSFVKQQQTAIKMYKH--AGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYIS 204 (1011)
Q Consensus 127 f~ayvr~~d~~~Aqq~a~kL~K~--~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~ 204 (1011)
+......|.|++|++.+.+.... .|.....+-+.-.+.++... .+.|+..++++++.+| ..+..+.-+++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq-------~~~A~~~l~raL~~dp-~~~~~~l~~a~ 181 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ-------FDQAEEYLKRALELDP-QFPPALLELAR 181 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC-------chhHHHHHHHHHHhCc-CCChHHHHHHH
Confidence 88888899999999987766532 12222212233334443322 3467777777778788 77788888899
Q ss_pred HHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001799 205 ILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWE 266 (1011)
Q Consensus 205 IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~ 266 (1011)
.+...|+|.+|..+++..... .+...+.+.+..++-..+|+-+.+.++-..+-..-|...+
T Consensus 182 ~~~~~~~y~~Ar~~~~~~~~~-~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 182 LHYKAGDYAPARLYLERYQQR-GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHhcccchHHHHHHHHHHhc-ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 999999999999999887643 3445555666668888899988888766666666666443
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=2.8e-06 Score=93.17 Aligned_cols=222 Identities=16% Similarity=0.108 Sum_probs=171.6
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
++.+.---..+..|++..|+..|-+++.-+|++-.+.+.+|.++..+|+-.-|+.-+..++++ .|.-..+....
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~~ARiQR 112 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc------CccHHHHHHHh
Confidence 566666677889999999999999999999999999999999999999999999999999876 47777788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhc
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHM---MGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLC 169 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~---~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~ 169 (1011)
|.++..+|++++|..-|...++-+|++.... ..+..+ ...|.....+.+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~-------------------------~e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI-------------------------QEHWVLVQQLKSASG 167 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH-------------------------HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999764322 111111 012333333322221
Q ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHH
Q 001799 170 GNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTA 249 (1011)
Q Consensus 170 ~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~ee 249 (1011)
+.+ ..-+..++...++..| =+..-..+.+..|...|+...|+.-+..+-. +-.++.+.+|-.+.++...|+.+.
T Consensus 168 ~GD----~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask-Ls~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 168 SGD----CQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASK-LSQDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred CCc----hhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHh-ccccchHHHHHHHHHHHhhhhHHH
Confidence 111 2234455666566666 3455667778999999999999999988743 345778888888999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHH
Q 001799 250 AAQIYKKILELSPDDWECFLHY 271 (1011)
Q Consensus 250 A~~~~~kaL~~nPDdw~~~~~y 271 (1011)
+....+++|+.|||.-.+|-.|
T Consensus 242 sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 242 SLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred HHHHHHHHHccCcchhhHHHHH
Confidence 9999999999999988877655
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.71 E-value=2.6e-07 Score=90.45 Aligned_cols=104 Identities=15% Similarity=0.064 Sum_probs=96.1
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+..+.....++..|++++|+..+++++..+|+++.++...|.++...|++++|...++++++. .|.++.++..+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l 91 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL------DPDDPRPYFHA 91 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCChHHHHHH
Confidence 445667778899999999999999999999999999999999999999999999999998664 68899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDH 122 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el 122 (1011)
|.+|...|++++|+..|+++++.+|++...
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 999999999999999999999999998764
No 88
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.71 E-value=2.6e-06 Score=101.12 Aligned_cols=234 Identities=18% Similarity=0.148 Sum_probs=156.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhh--CCCCCCcHHHHH
Q 001799 21 DAIDSRQFKNALKQSTALLAK--------YPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQ--NDSTLMDDLTLS 90 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk--------~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~--d~~~P~D~~al~ 90 (1011)
.+...|+|++|+.+|..++.. +|.-....-..|.+|..++++++|..+|++|+.+... ....|.-..++.
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~ 287 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLN 287 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 456899999999999999987 5544334444688899999999999999999886541 223455556788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHc---C--CcH--H
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKY-----HNNMD---HMMGLFNCYVREYSFVKQQQTAIKMYKHA---G--EER--F 155 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~-----P~n~e---l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~---P--~~r--y 155 (1011)
.|+.+|...|++++|..++++|+++. ...++ .+..++..+...++++.|...+.+..++. | ++. -
T Consensus 288 nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a 367 (508)
T KOG1840|consen 288 NLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA 367 (508)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH
Confidence 99999999999999999999998853 22333 33467778888899988866554444332 2 221 0
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhc----CC---CCCHHHHHHHHHHHHHcCChHHHHHHHHhhh-----
Q 001799 156 LLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVAS----HS---LHEPEALIVYISILEQQSKYGDALEILSGTL----- 223 (1011)
Q Consensus 156 ~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~----~p---~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l----- 223 (1011)
-..+-++..++. .++ +..|+.+.+++++. .. ....-.+..++..+.+.+++.+|.+++....
T Consensus 368 ~~~~nl~~l~~~-~gk-----~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 368 KIYANLAELYLK-MGK-----YKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred HHHHHHHHHHHH-hcc-----hhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 111222222221 111 23334444443332 11 1223356677888888899988888877653
Q ss_pred -cccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 224 -GSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 224 -~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
|.-.|+-...+..+|.+|..+|++++|+++-..++..
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2212333345667889999999999999999988853
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=1.1e-06 Score=104.96 Aligned_cols=247 Identities=16% Similarity=0.085 Sum_probs=178.9
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001799 27 QFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLAT 106 (1011)
Q Consensus 27 n~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~ 106 (1011)
..+++++.++++++++|+|+.+.+..++-+.-.++.+.|.+.+++++++. .-.++.+|+.|+.++...+++.+|+
T Consensus 459 ~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhhHHHH
Confidence 45789999999999999999999999999999999999999999998752 2357789999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHh--------cCCcH----
Q 001799 107 SCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER-FLLWAVCSIQLQVL--------CGNGG---- 173 (1011)
Q Consensus 107 ~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r-y~~Wai~sl~Lq~~--------~~~~a---- 173 (1011)
.+-..|+.-.|+|..+...-...-..-+|..++..+...++....... ...-..-+..++.. ...++
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 999999999999887766666666667888888777776665443211 00000000011000 01111
Q ss_pred HHHHHHHHHHHHHHH-----h-----cCCC---CC-HHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHH
Q 001799 174 EKLLLLAEGLLKKHV-----A-----SHSL---HE-PEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGR 239 (1011)
Q Consensus 174 ~klL~LAek~Lekai-----~-----~~p~---~~-~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ 239 (1011)
..+..++..-.+.+- + ..|. .. ..-+.+.+....+.++.++|.-.+..+-+ ..+..+..+++.|.
T Consensus 614 r~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~-~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK-IDPLSASVYYLRGL 692 (799)
T ss_pred HHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-cchhhHHHHHHhhH
Confidence 122333322221110 0 0110 01 22444556777788888999988888854 36677788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 001799 240 LLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 240 ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
.+...|++++|.+.|..++..|||+......+..++++.+
T Consensus 693 ~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999888865
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.1e-06 Score=95.87 Aligned_cols=244 Identities=13% Similarity=0.049 Sum_probs=185.0
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhC---CCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC
Q 001799 16 VRPIWDAI--DSRQFKNALKQSTALLAKY---PNS-------PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL 83 (1011)
Q Consensus 16 l~~I~dal--d~gn~KqAL~l~dklLKk~---P~~-------~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P 83 (1011)
.+.+++++ -..+-++|-..|..++... |.. -.-+.-.|.+|.++|-+.+|...++.+++. -
T Consensus 181 ~kaLFey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~ 253 (478)
T KOG1129|consen 181 VKALFEYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------F 253 (478)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------C
Confidence 44444443 4556667766666655442 221 123456688999999999999999988653 2
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001799 84 MDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSI 163 (1011)
Q Consensus 84 ~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl 163 (1011)
..+++...|..+|...++++.|+.+|...+...|.+...+...+..+-..+++.+|.+.+....|..|.+-...-.+...
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 35688999999999999999999999999999999998888999999999999999999988889999874311111111
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccC-C-ChHHHHHHHHHHH
Q 001799 164 QLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLL-V-IEVDKLRMQGRLL 241 (1011)
Q Consensus 164 ~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~-~-~~~~~l~l~a~ll 241 (1011)
++ -++.++.++..+.+++ +.. ..++|-+...+-.+...++++=++..+++++...- + ...+.||..|.+.
T Consensus 334 yf---Y~~~PE~AlryYRRiL----qmG-~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 334 YF---YDNNPEMALRYYRRIL----QMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred cc---cCCChHHHHHHHHHHH----Hhc-CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 11 1223444444444444 444 37889999999999999999999999999875321 3 3467899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 242 ARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 242 ~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
...|++..|...++-+|..+|++-+++.++.-.
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence 999999999999999999999999999887643
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.67 E-value=5.9e-06 Score=98.13 Aligned_cols=228 Identities=16% Similarity=0.152 Sum_probs=150.3
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCC--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 001799 42 YPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQND--STLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGK---- 115 (1011)
Q Consensus 42 ~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~--~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~---- 115 (1011)
.|.-..+....+.++...|++++|..+|+.+++.+.+.. ..|.=...+..+|.+|+.+++|++|+.+|++|+..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 466666777899999999999999999999988753211 12222233445899999999999999999999984
Q ss_pred -CCCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHcC-----CcHH--HHHHHHHHHHHHhc-CCcHHHHHHHHHHH
Q 001799 116 -YHNNMD---HMMGLFNCYVREYSFVKQQQTAIKMYKHAG-----EERF--LLWAVCSIQLQVLC-GNGGEKLLLLAEGL 183 (1011)
Q Consensus 116 -~P~n~e---l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P-----~~ry--~~Wai~sl~Lq~~~-~~~a~klL~LAek~ 183 (1011)
.++++. ++.+|+.+|...|+|.+|...+.+..++.- +.+. ....-.+...+..+ .+.+.+++.-+.+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 355554 445888999999999999877666554432 1111 11111222222221 11233445555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------CCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 184 LKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSL-------LVIEVDKLRMQGRLLARQGDYTAAAQIYKK 256 (1011)
Q Consensus 184 Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~-------~~~~~~~l~l~a~ll~klg~~eeA~~~~~k 256 (1011)
+.++...+....+.....++.++..+|+|+||.+++.+++... ...-...+...|..+...+++.+|...|.+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence 5444333322334456678899999999999999999886321 111122355678888999999999999988
Q ss_pred HHHh----CCCCHHHHH
Q 001799 257 ILEL----SPDDWECFL 269 (1011)
Q Consensus 257 aL~~----nPDdw~~~~ 269 (1011)
+... .|+......
T Consensus 435 ~~~i~~~~g~~~~~~~~ 451 (508)
T KOG1840|consen 435 AKDIMKLCGPDHPDVTY 451 (508)
T ss_pred HHHHHHHhCCCCCchHH
Confidence 8764 455544433
No 92
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=7.5e-07 Score=94.23 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=103.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001799 51 LKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCY 130 (1011)
Q Consensus 51 LKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ay 130 (1011)
+-...|+..|+++......+.. . .|.. -|...++.++++..|+++++.+|+|.+.+..++.+|
T Consensus 21 ~~~~~Y~~~g~~~~v~~~~~~~----~----~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~ 83 (198)
T PRK10370 21 LCVGSYLLSPKWQAVRAEYQRL----A----DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYY 83 (198)
T ss_pred HHHHHHHHcchHHHHHHHHHHH----h----Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3445577888887754333221 0 1211 122367778899999999999999999999999999
Q ss_pred HHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001799 131 VREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQS 210 (1011)
Q Consensus 131 vr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qg 210 (1011)
...|++.+|..++.+.++..|++.. .|..++.++ +...|
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~~~~-~~~~lA~aL----------------------------------------~~~~g 122 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGENAE-LYAALATVL----------------------------------------YYQAG 122 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH----------------------------------------HHhcC
Confidence 9999999999988888888887764 222222211 11222
Q ss_pred C--hHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 211 K--YGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 211 k--~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
+ +++|.++++.++.. .|.++..++.+|..+.+.|+|++|+..|+++++.+|.+
T Consensus 123 ~~~~~~A~~~l~~al~~-dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 123 QHMTPQTREMIDKALAL-DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred CCCcHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2 46666667666643 56666666677777777777777777777777766554
No 93
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=6.2e-06 Score=94.85 Aligned_cols=181 Identities=13% Similarity=0.004 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001799 28 FKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATS 107 (1011)
Q Consensus 28 ~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~ 107 (1011)
..++..+..+..+ |....+++-+|...++.|++++|+..++..+.. .|+|+-.+...+.++.+.++..+|.+
T Consensus 290 ~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 290 NQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred ccchHHHHHHHhC--ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 3344444444444 788889999999999999999999999875432 68999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 001799 108 CYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKH 187 (1011)
Q Consensus 108 ~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Leka 187 (1011)
.+++++..+|+..-+...++++|+..|++++|++......+..|+++. .|..++-.. ..+
T Consensus 362 ~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~-~w~~LAqay----------------~~~--- 421 (484)
T COG4783 362 RLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN-GWDLLAQAY----------------AEL--- 421 (484)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch-HHHHHHHHH----------------HHh---
Confidence 999999999999888899999999999999999999999999999886 675544332 111
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHH
Q 001799 188 VASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLL 241 (1011)
Q Consensus 188 i~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll 241 (1011)
+ ...++...++..+...|++++|+..+..+....-...+++.+.-+.+.
T Consensus 422 ---g--~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~ 470 (484)
T COG4783 422 ---G--NRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARID 470 (484)
T ss_pred ---C--chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 1 345677778888889999999999999885432234455444444443
No 94
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.62 E-value=9.2e-07 Score=101.52 Aligned_cols=132 Identities=18% Similarity=0.120 Sum_probs=119.2
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
+.......++.|+++.|++..+.+++..|+|+++.-+++.++...|+..+|.+.+++++.+ .|.....+.++|.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~l~~~~a~ 382 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL------DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999775 5777888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE 152 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~ 152 (1011)
+|...|++.+|+....+..+.+|+|++.|..|+++|...|+-.++..+....+....+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999988775555544443
No 95
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=4.3e-06 Score=88.99 Aligned_cols=171 Identities=17% Similarity=0.125 Sum_probs=141.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
=++.+++.|+..-|...++++-...|+++-..-++|..+...|.+++|+++++..++ ..|+|..++-.--.+.+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~------ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLE------DDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhc------cCcchhHHHHHHHHHHH
Confidence 355789999999999999999999999999999999999999999999999998643 26999988887777889
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHhcCCcHHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQ-LQVLCGNGGEKL 176 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~-Lq~~~~~~a~kl 176 (1011)
.+|+.-+|++..-..+++.|+|.|+|..+...|+..++|++|.-....+.=..|-++-+|-...-+. .++. ..-
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg-----~eN 206 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG-----AEN 206 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh-----HHH
Confidence 9999999999999999999999999999999999999999999999999999998885454433332 2221 122
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHH
Q 001799 177 LLLAEGLLKKHVASHSLHEPEALI 200 (1011)
Q Consensus 177 L~LAek~Lekai~~~p~~~~eel~ 200 (1011)
+..+.+...++++..| ++..+++
T Consensus 207 ~~~arkyy~~alkl~~-~~~ral~ 229 (289)
T KOG3060|consen 207 LELARKYYERALKLNP-KNLRALF 229 (289)
T ss_pred HHHHHHHHHHHHHhCh-HhHHHHH
Confidence 4566677777777676 4544443
No 96
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.57 E-value=1.3e-06 Score=82.73 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=86.3
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNS---PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLST 91 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~---~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~ 91 (1011)
.+..+..++..|++++|+..++++++.+|++ +.+....|.++.+.|++++|+..++.++..- +..|..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~ 81 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccHHHHH
Confidence 4566777888999999999999999999887 4678889999999999999999998876541 122334678889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 92 LQIVFQRLDRLDLATSCYEYACGKYHNNMDH 122 (1011)
Q Consensus 92 Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el 122 (1011)
+|.++...|++++|...|+++++.+|++...
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987643
No 97
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.9e-05 Score=86.66 Aligned_cols=204 Identities=18% Similarity=0.090 Sum_probs=147.9
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH
Q 001799 50 ALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNM-----DHMM 124 (1011)
Q Consensus 50 aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~-----el~~ 124 (1011)
+.+|.=+.-.++.++|..++..+++. .|.-.++..+||..|+.-|..|.|+.+-+..+ ..|+-. -+..
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~spdlT~~qr~lAl~ 111 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-ESPDLTFEQRLLALQ 111 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCCchHHHHHHHH
Confidence 45677677788999999999877553 57778899999999999999999999887665 555422 1456
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-
Q 001799 125 GLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYI- 203 (1011)
Q Consensus 125 ~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~- 203 (1011)
+|+.-|+..|=++.|.+.+..|.. .|+-+....-.+..++|.. .+-+|+++.|+++.+- ...+ .+.+...+|+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~d-e~efa~~AlqqLl~IYQ~t--reW~KAId~A~~L~k~--~~q~-~~~eIAqfyCE 185 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVD-EGEFAEGALQQLLNIYQAT--REWEKAIDVAERLVKL--GGQT-YRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhc-chhhhHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHc--CCcc-chhHHHHHHHH
Confidence 899999999999999998777753 1222211122233345543 2456888888887642 2122 2344455555
Q ss_pred --HHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 204 --SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 267 (1011)
Q Consensus 204 --~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~ 267 (1011)
+-+....+.+.|...+.+++.. .|..+..-.++|++....|+|+.|++.++.++++||+...-
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa-~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~e 250 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQA-DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSE 250 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhh-CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHH
Confidence 4444557899999999999864 66666666678999999999999999999999999986443
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00025 Score=83.22 Aligned_cols=195 Identities=20% Similarity=0.174 Sum_probs=121.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPN----SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~----~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
.+...|+.++|+.|+. ++++++- +.+. +-||+|.+|+|+.|+|+..++-. .+.|+.++++.+
T Consensus 52 KvValIq~~ky~~ALk----~ikk~~~~~~~~~~~-fEKAYc~Yrlnk~Dealk~~~~~---------~~~~~~ll~L~A 117 (652)
T KOG2376|consen 52 KVVALIQLDKYEDALK----LIKKNGALLVINSFF-FEKAYCEYRLNKLDEALKTLKGL---------DRLDDKLLELRA 117 (652)
T ss_pred hHhhhhhhhHHHHHHH----HHHhcchhhhcchhh-HHHHHHHHHcccHHHHHHHHhcc---------cccchHHHHHHH
Confidence 4567789999999984 4455553 2222 68999999999999999988721 356677999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHhcCCc
Q 001799 94 IVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLW-AVCSIQLQVLCGNG 172 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~W-ai~sl~Lq~~~~~~ 172 (1011)
.++..+++|++|..+|+..++-+-++.+.........+. --..+| -++.....|.+.|... +..+.+......+.
T Consensus 118 QvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~q 193 (652)
T KOG2376|consen 118 QVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQVQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQ 193 (652)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcccHHH
Confidence 999999999999999999998877765544433322221 011111 2344444555555333 33333321111123
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHH--------HHHHHHHHHHHcCChHHHHHHHHhhhcccCCChH
Q 001799 173 GEKLLLLAEGLLKKHVASHSLHEPE--------ALIVYISILEQQSKYGDALEILSGTLGSLLVIEV 231 (1011)
Q Consensus 173 a~klL~LAek~Lekai~~~p~~~~e--------el~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~ 231 (1011)
+..+|.-|.+...+-...+. .+.| .-.-++-|+..+|+.+||.+++...+....++++
T Consensus 194 A~elL~kA~~~~~e~l~~~d-~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~ 259 (652)
T KOG2376|consen 194 AIELLEKALRICREKLEDED-TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEP 259 (652)
T ss_pred HHHHHHHHHHHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCch
Confidence 34445555444433333332 1222 2234567899999999999999888765444443
No 99
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=2.7e-05 Score=87.51 Aligned_cols=237 Identities=14% Similarity=0.061 Sum_probs=102.4
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHH
Q 001799 82 TLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVC 161 (1011)
Q Consensus 82 ~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~ 161 (1011)
-|.+...+..+|.++...|++++|+-.|+++.-++|.+.+..-.++....+.|++..-....-.|+......+. -|.+.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~-~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTAS-HWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchh-hhhhh
Confidence 34444444455555555555555555555555555554444444444444445444433332222222211211 23222
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHH
Q 001799 162 SIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLL 241 (1011)
Q Consensus 162 sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll 241 (1011)
+..+- . +|-+..|....+|.+..++ .+.+++++.+..|...|+.++|.-.+..+.. +.|.+.+.+.-+-..|
T Consensus 307 ~~~l~-~-----~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~-Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 307 AQLLY-D-----EKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM-LAPYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhh-h-----hhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh-cchhhHHHHHHHHHHH
Confidence 22110 0 0112222222233333444 4444444555555555555555444444421 1333333332222344
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHhccCccccccCCCCCCCCCCcccccccCcchHhhhhcHHHHHHHH
Q 001799 242 ARQGDYTAAAQIYKKILELSPDDWECFLHYL-GCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSV 320 (1011)
Q Consensus 242 ~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl-~all~~~~~w~~~~~~~~~~p~~~~~~~~~~l~~e~~~~~i~ea~~fi 320 (1011)
...|+..||.-..+.+...-|.+...+..+. +-.++ + ...-++|..|+
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~-----------------d--------------p~~rEKAKkf~ 427 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP-----------------D--------------PRMREKAKKFA 427 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc-----------------C--------------chhHHHHHHHH
Confidence 4445555555444444444444444443221 00000 0 11234788888
Q ss_pred HHHHhccCCCCchhhHhhc----hhHHHHHhhhCCCCchHHHHHHHHHHHHcC
Q 001799 321 KKLHADTSVNLIRCPYLAN----LEIERRKLLYGKNNNDELMEAVLEYFLSFG 369 (1011)
Q Consensus 321 ~~l~~~~~~~~~Rgp~LA~----LEL~~r~~~~G~~d~~~l~~~l~~Y~~kfg 369 (1011)
++=+. .|..|+.. -||.. ..|. ..+.+.++..|+..|.
T Consensus 428 ek~L~------~~P~Y~~AV~~~AEL~~---~Eg~--~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 428 EKSLK------INPIYTPAVNLIAELCQ---VEGP--TKDIIKLLEKHLIIFP 469 (564)
T ss_pred Hhhhc------cCCccHHHHHHHHHHHH---hhCc--cchHHHHHHHHHhhcc
Confidence 76543 33334432 23332 2232 3578899999988884
No 100
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.53 E-value=0.00064 Score=82.00 Aligned_cols=226 Identities=15% Similarity=0.076 Sum_probs=172.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 36 TALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGK 115 (1011)
Q Consensus 36 dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~ 115 (1011)
.-..++.-+++..+-..+.++.+-|+++.+.+.+++++-. .-+..+.|+.++..|...|..-.|+.+.++..++
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~------~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF------SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh------hhhhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 3345556688888899999999999999999999998544 3466789999999999999999999999999999
Q ss_pred C--CCCHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHhcCCc--HH-HHHHHHHHH
Q 001799 116 Y--HNNMDHMMGLF-NCYVREYSFVKQQQTAIKMYKHAGE------ERFLLWAVCSIQLQVLCGNG--GE-KLLLLAEGL 183 (1011)
Q Consensus 116 ~--P~n~el~~~Lf-~ayvr~~d~~~Aqq~a~kL~K~~P~------~ry~~Wai~sl~Lq~~~~~~--a~-klL~LAek~ 183 (1011)
. |++.-.++... .++-+-+.++++...|.++...-.. .+-++.-+++.-.++...+. .+ ..-..+...
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 8 77766555444 4445556677777777777653221 22222223333334443331 12 234577788
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001799 184 LKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPD 263 (1011)
Q Consensus 184 Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPD 263 (1011)
++++++.+| .++..++.++.-+..+++.+.|++.+...+.-...+++..|.+.|.++-..+++.+|..+...+++..|+
T Consensus 467 le~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 467 LEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred HHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 888888888 7889999999999999999999999999986323467788999999999999999999999999999999
Q ss_pred CHHHH
Q 001799 264 DWECF 268 (1011)
Q Consensus 264 dw~~~ 268 (1011)
|....
T Consensus 546 N~~l~ 550 (799)
T KOG4162|consen 546 NHVLM 550 (799)
T ss_pred hhhhc
Confidence 87654
No 101
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.51 E-value=1.8e-05 Score=86.37 Aligned_cols=187 Identities=14% Similarity=0.027 Sum_probs=123.3
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYAL---ALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL 87 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~---aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~ 87 (1011)
..+........++..|+|++|+..+++++..+|+.+.+. .+.|.++++.+++++|+..+++.++.- +..|.-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~---P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN---PTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---cCCCchHH
Confidence 445667888899999999999999999999999998765 888999999999999999999986653 34677778
Q ss_pred HHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001799 88 TLSTLQIVFQRLD---------------R---LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKH 149 (1011)
Q Consensus 88 al~~Lg~~~~~lg---------------~---~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~ 149 (1011)
+++.+|.++..++ + ..+|...|++.++.+|+..-.-.... .+..-+-.-|++
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~--rl~~l~~~la~~-------- 177 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK--RLVFLKDRLAKY-------- 177 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH--HHHHHHHHHHHH--------
Confidence 8899998764443 1 24678889999999998642211111 000000001111
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 001799 150 AGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGT 222 (1011)
Q Consensus 150 ~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~ 222 (1011)
-+.+...+++. + ....++..++.++++.... + ..++++..+...+...|..++|.+.....
T Consensus 178 -------e~~ia~~Y~~~--~-~y~AA~~r~~~v~~~Yp~t-~-~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 -------ELSVAEYYTKR--G-AYVAVVNRVEQMLRDYPDT-Q-ATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred -------HHHHHHHHHHc--C-chHHHHHHHHHHHHHCCCC-c-hHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 12233333321 1 1122334455555543332 2 46778888889999999888887776544
No 102
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.50 E-value=3.4e-07 Score=82.83 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=69.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 24 DSRQFKNALKQSTALLAKYPN--SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~--~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
++|+|++|+..++++++..|+ +..++..+|.+++++|++++|+.++++ .+. .|.+......+|.++..+|+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHHHTT-
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHHHhCC
Confidence 579999999999999999995 455667789999999999999999987 332 35677888899999999999
Q ss_pred HHHHHHHHHHH
Q 001799 102 LDLATSCYEYA 112 (1011)
Q Consensus 102 ~~eA~~~YekA 112 (1011)
+++|+++|++|
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999886
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.8e-05 Score=91.74 Aligned_cols=240 Identities=16% Similarity=0.101 Sum_probs=173.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCC-CCCcHHHHHHHHHHHHH
Q 001799 20 WDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDS-TLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 20 ~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~-~P~D~~al~~Lg~~~~~ 98 (1011)
..++...+|..|++.+++++..+ .+..++...+.+++-.|++.+....|..+++.-...-. ...=..++..+|..|..
T Consensus 232 naaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 232 NAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 35678899999999999999999 88889999999999999999999999988764210000 00001223346668888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHH
Q 001799 99 LDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLL 178 (1011)
Q Consensus 99 lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~ 178 (1011)
.++++.|+..|++++...-. ++.... ..+.+++.+..+...-..|.-..-.-.-...++. .+ =++
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt-~~~ls~-------lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk--~g-----dy~ 375 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRT-PDLLSK-------LKEAEKALKEAERKAYINPEKAEEEREKGNEAFK--KG-----DYP 375 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcC-HHHHHH-------HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh--cc-----CHH
Confidence 89999999999998876554 333322 2334444444444443444321100000001111 11 145
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 179 LAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKIL 258 (1011)
Q Consensus 179 LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL 258 (1011)
.|.+.+.+++..+| ++...+-..+-.|.+.|.+.+|++-.+..+. +.|.....+..+|.++..+.+|+.|.+.|++++
T Consensus 376 ~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-L~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKCIE-LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777778888 7888888889999999999999999998874 477777778888999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHhc
Q 001799 259 ELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 259 ~~nPDdw~~~~~yl~all~ 277 (1011)
+.+|++-.+...|-.|+..
T Consensus 454 e~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred hcCchhHHHHHHHHHHHHH
Confidence 9999999999999888764
No 104
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.3e-06 Score=96.13 Aligned_cols=253 Identities=14% Similarity=0.028 Sum_probs=175.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
...-.+.+...+|..|+..+..+++..|++..++.-++.++...|++++|+--+++.+.+ .|.+.......+.+
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL------KDGFSKGQLREGQC 126 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec------CCCccccccchhhh
Confidence 344446678889999999999999999999999999999999999999999988887554 46666777778888
Q ss_pred HHHcCCHHHHHHHHHHH-----HH-------hC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHH
Q 001799 96 FQRLDRLDLATSCYEYA-----CG-------KY------HNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLL 157 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekA-----lk-------~~------P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~ 157 (1011)
+..++...+|...|+.. .+ .- |.-..+...-..++.-.+++..|++.+....|.++.+.+..
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHH
Confidence 88888777777655421 11 11 22122334556788888999999999999999988765311
Q ss_pred H-HHHHHHH------------HHhc-CCcH----------H---------------HHHHHHHHHHHHHHhcCCCCCHH-
Q 001799 158 W-AVCSIQL------------QVLC-GNGG----------E---------------KLLLLAEGLLKKHVASHSLHEPE- 197 (1011)
Q Consensus 158 W-ai~sl~L------------q~~~-~~~a----------~---------------klL~LAek~Lekai~~~p~~~~e- 197 (1011)
. .....++ |..+ +++. + ..+..|+.....++..+| ++..
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP-~n~~~ 285 (486)
T KOG0550|consen 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP-SNKKT 285 (486)
T ss_pred HhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc-cccch
Confidence 1 1111111 1111 1110 0 013566666677777777 3322
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 198 ---ALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 198 ---el~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
-+...+.+..+.|+..||+.-.+.++.. .+.-+..+..+|.++.-+++|++|.+.|+++++...+ ......+..+
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 3334467888999999999999999742 4455677788899999999999999999999987655 3333334444
Q ss_pred Hhc
Q 001799 275 LLE 277 (1011)
Q Consensus 275 ll~ 277 (1011)
.+.
T Consensus 364 ~~a 366 (486)
T KOG0550|consen 364 QLA 366 (486)
T ss_pred HHH
Confidence 443
No 105
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.48 E-value=2.5e-06 Score=94.01 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=93.5
Q ss_pred HhhHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHH
Q 001799 13 ERRVRPIWDA-IDSRQFKNALKQSTALLAKYPNSP---YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLT 88 (1011)
Q Consensus 13 eRrl~~I~da-ld~gn~KqAL~l~dklLKk~P~~~---~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~a 88 (1011)
...+...++. +..|+|++|+..+++.++++|+++ .++++.|.+++..|++++|+..++.+++.- +..|..+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHH
Confidence 3446666766 568999999999999999999994 699999999999999999999999986643 346778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDH 122 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el 122 (1011)
+..+|.++..+|++++|.+.|+++++.+|++..+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999997643
No 106
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=1.9e-06 Score=92.30 Aligned_cols=128 Identities=18% Similarity=0.111 Sum_probs=115.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD 100 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg 100 (1011)
++.-.|.-+.++....+.+-.+|++.+.+.-.|..+++.|++.+|+..+.++..+ .|+|..+|..+|.+|...|
T Consensus 75 a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 75 ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL------APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc------CCCChhhhhHHHHHHHHcc
Confidence 4567788888999999999999999998888999999999999999999998664 7999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 101 RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 101 ~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
++++|...|.+|++..|+++.+..++++.|+-.||++.|+......+-.-+.+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~ 202 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS 202 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch
Confidence 999999999999999999999999999999999999999998777766555443
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3.6e-06 Score=89.54 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=108.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLD 103 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~ 103 (1011)
..|+|+.|++.++.+|..+|+|...+..|-.++-.+|+.-+|++.+.+.++. .+.|.++|.-++.+|...|+|+
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~------F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK------FMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH------hcCcHHHHHHHHHHHHhHhHHH
Confidence 4799999999999999999999999999999999999999999988887664 6899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHcCCc
Q 001799 104 LATSCYEYACGKYHNNMDHMMGLFNCYVREY---SFVKQQQTAIKMYKHAGEE 153 (1011)
Q Consensus 104 eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~---d~~~Aqq~a~kL~K~~P~~ 153 (1011)
+|.-+||..+-..|-|+-...+++..+.-.| ++..+.+.+.+..|.+|.+
T Consensus 172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 9999999999999999877777886665544 4556677777778888844
No 108
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.42 E-value=3e-06 Score=91.80 Aligned_cols=108 Identities=18% Similarity=0.157 Sum_probs=97.9
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSP---YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~---~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
++-....++++..|+|+.|.+.+.+-++++|+++ .+++|.|.+++.+|++++|...+..+..-.+ ..|+-++++
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P---~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP---KSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC---CCCCChHHH
Confidence 6678899999999999999999999999999995 4899999999999999999999988765443 467888999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYACGKYHNNMDHM 123 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~ 123 (1011)
..||.++.++|+.++|..+|+.+++.+|+...+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999986543
No 109
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.41 E-value=4.2e-06 Score=96.43 Aligned_cols=104 Identities=13% Similarity=-0.067 Sum_probs=96.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001799 49 LALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFN 128 (1011)
Q Consensus 49 ~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ 128 (1011)
+..+|..++..|++++|+..+++++++ .|.+..++..+|.+|..+|++++|+..+++|++.+|++..+++.++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 456788899999999999999999875 68999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHcCCcH-HHHH
Q 001799 129 CYVREYSFVKQQQTAIKMYKHAGEER-FLLW 158 (1011)
Q Consensus 129 ayvr~~d~~~Aqq~a~kL~K~~P~~r-y~~W 158 (1011)
+|...|+|..|...+.+..+..|+++ ...|
T Consensus 79 ~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~ 109 (356)
T PLN03088 79 ACMKLEEYQTAKAALEKGASLAPGDSRFTKL 109 (356)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999999987 3344
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=4.1e-06 Score=84.39 Aligned_cols=107 Identities=11% Similarity=-0.041 Sum_probs=92.9
Q ss_pred HHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 38 LLAKY-PNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKY 116 (1011)
Q Consensus 38 lLKk~-P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~ 116 (1011)
+.... |+.....+-.|.-+...|++++|..+++-.... .|.+...|..||.+++.+|++++|+..|.+|...+
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34455 677778888899999999999999999876543 69999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001799 117 HNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHA 150 (1011)
Q Consensus 117 P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~ 150 (1011)
|+++....+++.+++..|+...|.+.+......-
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988866555433
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.41 E-value=7.2e-06 Score=77.62 Aligned_cols=109 Identities=12% Similarity=-0.006 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 001799 47 YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN---MDHM 123 (1011)
Q Consensus 47 ~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n---~el~ 123 (1011)
..++.+|..+.+.|++++|...+.+++..- +..|..+.++..+|.++...|++++|...|++++..+|++ .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456788999999999999999999986541 1123336788999999999999999999999999999986 5678
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHH
Q 001799 124 MGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLW 158 (1011)
Q Consensus 124 ~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~W 158 (1011)
..++.++...+++.+|.+...++.+.+|++....+
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 89999999999999999999999999999876433
No 112
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.38 E-value=3.6e-06 Score=73.64 Aligned_cols=91 Identities=20% Similarity=0.171 Sum_probs=53.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD 100 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg 100 (1011)
.++..|++.+|+..++++++..|+++.++...|.++...|++++|...++.++.. .|.+..++..++.++...|
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchhHHHHHHHHHHHHH
Confidence 3455566666666666666666666555666666666666666666666555442 3444455566666666666
Q ss_pred CHHHHHHHHHHHHHhCC
Q 001799 101 RLDLATSCYEYACGKYH 117 (1011)
Q Consensus 101 ~~~eA~~~YekAlk~~P 117 (1011)
++++|...++++++.+|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666655555
No 113
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.37 E-value=6.2e-05 Score=82.23 Aligned_cols=184 Identities=10% Similarity=-0.023 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001799 45 SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMM 124 (1011)
Q Consensus 45 ~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~ 124 (1011)
.+...+.+|..+...|++++|++.+++++..-+ ..|.-..+...+|.+|...+++++|+..|++.++.+|+++++-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 466778899999999999999999998866421 22333344578899999999999999999999999999876544
Q ss_pred ---HHHHHHHHhc---------------CH---HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 001799 125 ---GLFNCYVREY---------------SF---VKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGL 183 (1011)
Q Consensus 125 ---~Lf~ayvr~~---------------d~---~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~ 183 (1011)
..+.++...+ |. .+|.+.+..+.+.+|+.+|.-- +.+.+......
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~--------------A~~rl~~l~~~ 173 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD--------------ATKRLVFLKDR 173 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH--------------HHHHHHHHHHH
Confidence 4444432222 22 3455666778888898876211 11111111111
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001799 184 LKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVI---EVDKLRMQGRLLARQGDYTAAAQIYKKI 257 (1011)
Q Consensus 184 Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~---~~~~l~l~a~ll~klg~~eeA~~~~~ka 257 (1011)
+. +--+..++.+.+.|+|..|+.-++..+.. .|. ..+.++.++..+.++|..++|.+..+.+
T Consensus 174 la-----------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 174 LA-----------KYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HH-----------HHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11 11124567888899999999999998754 553 4567888899999999999998765443
No 114
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.37 E-value=4.5e-06 Score=73.01 Aligned_cols=98 Identities=18% Similarity=0.132 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001799 48 ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLF 127 (1011)
Q Consensus 48 a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf 127 (1011)
++...|.++.+.|++++|+..++++++. .|.+..++..+|.++...+++++|...|+++++..|.+.+.+..++
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 3567888999999999999999988664 5777789999999999999999999999999999999998999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHcC
Q 001799 128 NCYVREYSFVKQQQTAIKMYKHAG 151 (1011)
Q Consensus 128 ~ayvr~~d~~~Aqq~a~kL~K~~P 151 (1011)
..+...+++..|...+.+..+..|
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHccCC
Confidence 999999999999988877777665
No 115
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=1.9e-05 Score=79.08 Aligned_cols=125 Identities=17% Similarity=0.087 Sum_probs=102.9
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCc---HH
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPY---ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMD---DL 87 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~---a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D---~~ 87 (1011)
..+..+..+++.+++..+...++++.+.+|++++ +....|.+++..|++++|.+.++.+++. .|.+ ..
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~------~~d~~l~~~ 86 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN------APDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCHHHHHH
Confidence 3467788888999999999999999999999954 6677899999999999999999998653 2222 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001799 88 TLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIK 145 (1011)
Q Consensus 88 al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~k 145 (1011)
+...|+.++...|++++|+..++.. ...|-...+....+.+|.+.|++.+|.+.+.+
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778999999999999999999763 33444455777899999999999999887654
No 116
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.31 E-value=7.1e-05 Score=79.48 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=92.9
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+........+++.|+|.+|++.++++...+|+++ --+.+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-------------------------------------~a~~A~l~l 48 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-------------------------------------YAPQAQLML 48 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-------------------------------------THHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-------------------------------------HHHHHHHHH
Confidence 3445555556666666666666666666666553 233344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHcCCcHHHHH
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMD---HMMGLFNCYVRE-----------YSFVKQQQTAIKMYKHAGEERFLLW 158 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~e---l~~~Lf~ayvr~-----------~d~~~Aqq~a~kL~K~~P~~ry~~W 158 (1011)
+.++...|++++|+..|++.++.+|+++. +++..+.++... ....+|...+..+.+.+|+++|.-.
T Consensus 49 a~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 49 AYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 44444555555555555555555554332 222333332221 2234566667777888888876211
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh---HHHHH
Q 001799 159 AVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE---VDKLR 235 (1011)
Q Consensus 159 ai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~---~~~l~ 235 (1011)
+. +.+......+ .+--+..+..+.+.|+|..|+..++..+.. .|+. .+.+.
T Consensus 129 A~--------------~~l~~l~~~l-----------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~ 182 (203)
T PF13525_consen 129 AK--------------KRLAELRNRL-----------AEHELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALA 182 (203)
T ss_dssp HH--------------HHHHHHHHHH-----------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHH
T ss_pred HH--------------HHHHHHHHHH-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHH
Confidence 11 1111111111 111234678889999999999999998864 6653 35677
Q ss_pred HHHHHHHHcCCHHHHH
Q 001799 236 MQGRLLARQGDYTAAA 251 (1011)
Q Consensus 236 l~a~ll~klg~~eeA~ 251 (1011)
.++..+.++|..+.+-
T Consensus 183 ~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 183 RLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHhCChHHHH
Confidence 7889999999888443
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.31 E-value=8e-06 Score=82.30 Aligned_cols=97 Identities=9% Similarity=-0.050 Sum_probs=89.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
..-.+..++.|+++.|.+.++.+...+|.+..++.-.|.++.++|++++|+..|..+..+ .|+|+.+...+|.|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~~ddp~~~~~ag~c 112 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------KIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCchHHHHHHHH
Confidence 344457889999999999999999999999999999999999999999999999998765 68999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Q 001799 96 FQRLDRLDLATSCYEYACGKYHN 118 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~ 118 (1011)
|..+|+.+.|.+.|+.|+...-.
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987633
No 118
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.29 E-value=3.7e-06 Score=72.70 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 001799 45 SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD-RLDLATSCYEYACGKYH 117 (1011)
Q Consensus 45 ~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg-~~~eA~~~YekAlk~~P 117 (1011)
++..+..+|.++.+.|++++|+..+.+++++ .|+++.++..+|.++..+| ++++|++.|++|++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4667777888888888888888888887665 5777788888888888887 68888888888888777
No 119
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.28 E-value=3e-06 Score=72.50 Aligned_cols=64 Identities=23% Similarity=0.131 Sum_probs=51.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001799 51 LKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNM 120 (1011)
Q Consensus 51 LKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~ 120 (1011)
.+|.++++.|++++|+..++++++. .|.+..++..+|.++...|++++|+..|+++++.+|+|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4678888888888888888887543 588888888888888888888888888888888888874
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.25 E-value=2.2e-05 Score=80.52 Aligned_cols=119 Identities=10% Similarity=0.023 Sum_probs=97.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNS--PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~--~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
|.|-.++|..+...+.++++.++.. ..++...|.++...|++++|+..+++++.+.+ ..+....++..+|.++..
T Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 8 DNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTS 84 (168)
T ss_pred ccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHH
Confidence 5566778899999998888887777 55668899999999999999999999977521 112235689999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhcCHHHHHHH
Q 001799 99 LDRLDLATSCYEYACGKYHNNMDHMMGLFNCYV-------REYSFVKQQQT 142 (1011)
Q Consensus 99 lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayv-------r~~d~~~Aqq~ 142 (1011)
.|++++|+..|++|++.+|.+.+.+..++.++. +.|++..|...
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHH
Confidence 999999999999999999999998888888887 77777755443
No 121
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.24 E-value=2.8e-05 Score=87.14 Aligned_cols=238 Identities=15% Similarity=0.075 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPN-SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~-~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
+-.|-++|-.|||.+|+..++ +...+|. ......+...++..+|+++..+..+.. + .+....++..++.
T Consensus 5 Lf~vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~--~~~~l~av~~la~ 74 (290)
T PF04733_consen 5 LFTVRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK-------S--SSPELQAVRLLAE 74 (290)
T ss_dssp THHHHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------T--SSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc-------C--CChhHHHHHHHHH
Confidence 346778899999999999888 3333343 244678888899999998876654321 1 2334566777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCc
Q 001799 95 VFQRLDRLDLATSCYEYACGKY-H-NNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNG 172 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~-P-~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~ 172 (1011)
.+...++.+.++...+..+... + .|+-+..-.+.++...|+++.|.+... .. ++....-..+-+++...+
T Consensus 75 y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~----~~-~~lE~~al~Vqi~L~~~R--- 146 (290)
T PF04733_consen 75 YLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLH----KG-GSLELLALAVQILLKMNR--- 146 (290)
T ss_dssp HHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCT----TT-TCHHHHHHHHHHHHHTT----
T ss_pred HHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHH----cc-CcccHHHHHHHHHHHcCC---
Confidence 7766566666666665544332 2 233344445566677788877655322 22 232211111112221111
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHHcC--ChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHH
Q 001799 173 GEKLLLLAEGLLKKHVASHSLHEPEALIVYI--SILEQQS--KYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYT 248 (1011)
Q Consensus 173 a~klL~LAek~Lekai~~~p~~~~eel~l~~--~IL~~qg--k~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~e 248 (1011)
.++|++.++++.+.+. + ..+..++ .|-...| ++++|.-+++.... ..+..+..+..+|.+...+|+|+
T Consensus 147 ----~dlA~k~l~~~~~~~e--D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 147 ----PDLAEKELKNMQQIDE--D-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp ----HHHHHHHHHHHHCCSC--C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HH
T ss_pred ----HHHHHHHHHHHHhcCC--c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHH
Confidence 4577777777655432 2 2233333 3433344 68888888888643 35566666777788888888888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 001799 249 AAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 249 eA~~~~~kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
+|.+.++++++.+|.|.+++.+++-+....+
T Consensus 219 eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 219 EAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 8888888888888888888888776655444
No 122
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=2.3e-05 Score=94.41 Aligned_cols=128 Identities=15% Similarity=0.002 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 26 RQFKNALKQSTALLAKYPNSPYALALKALVLERMGK--------CDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 26 gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk--------~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
+++.+|+.+++++++.+|++.++++.++.++..... .+.+.+...++..+ ...|.++.++..+|..+.
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al----~~~~~~~~~~~ala~~~~ 431 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL----PELNVLPRIYEILAVQAL 431 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc----ccCcCChHHHHHHHHHHH
Confidence 348899999999999999999999999988765321 22333444443332 125677889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLW 158 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~W 158 (1011)
..|++++|...|++|+..+|+ ...+..++..+...|++++|...+.+..+.+|..+.++|
T Consensus 432 ~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 432 VKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred hcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 999999999999999999995 678889999999999999999999999999999875455
No 123
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.23 E-value=6.2e-05 Score=79.91 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=72.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHc-----------CCH
Q 001799 34 QSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRL-----------DRL 102 (1011)
Q Consensus 34 l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~l-----------g~~ 102 (1011)
.+...-...|--+.+....|.++++.|++++|+..++..++.-+ ..|.-+.+++.+|.++... +..
T Consensus 30 ~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP---~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~ 106 (203)
T PF13525_consen 30 KLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP---NSPKADYALYMLGLSYYKQIPGILRSDRDQTST 106 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T---T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred HHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhhHHHHHHHHHHHhCccchhcccChHHH
Confidence 33444455566666666777777777777777777766654422 2444555666666665433 234
Q ss_pred HHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 103 DLATSCYEYACGKYHNNMDHM-----------------MGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 103 ~eA~~~YekAlk~~P~n~el~-----------------~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
.+|...|+..++.+|+++-+. +..+..|.+.|.|..|...+..+++.+|+.+.
T Consensus 107 ~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 107 RKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 478889999999999864321 13455577777777777777777777777653
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.17 E-value=2.3e-05 Score=80.80 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=79.3
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 43 PNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDH 122 (1011)
Q Consensus 43 P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el 122 (1011)
|....++..+|..+.+.|++++|+..++++++..+ ..+....++..+|.++...|++++|+..|+++++.+|++...
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 45567889999999999999999999999876422 122235789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCHHHH
Q 001799 123 MMGLFNCYVREYSFVKQ 139 (1011)
Q Consensus 123 ~~~Lf~ayvr~~d~~~A 139 (1011)
+..++.++...++...+
T Consensus 109 ~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEE 125 (172)
T ss_pred HHHHHHHHHHcCChHhH
Confidence 99999999888874433
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=2.7e-05 Score=90.28 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=107.6
Q ss_pred chHhhHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 11 IPERRVRPIWDAID-SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 11 v~eRrl~~I~dald-~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
+.-.....+..++. .+++..|+..++++.+.+|+ +.++.|.++...++..+|+.++.+++.. .|.|...+
T Consensus 167 ~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL 237 (395)
T PF09295_consen 167 VNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELL 237 (395)
T ss_pred cchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHH
Confidence 33344555555554 57999999999999999986 4566788888899999999999998653 68899999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAI 144 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~ 144 (1011)
...+.++...++++.|+++.++|++..|++.+.|+.|+.+|+..|+|+.|..+..
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999876543
No 126
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.7e-05 Score=88.29 Aligned_cols=116 Identities=13% Similarity=0.014 Sum_probs=93.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC----H-----------HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCC
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNS----P-----------YALALKALVLERMGKCDESLSVSLQAKDLLYQNDST 82 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~----~-----------~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~ 82 (1011)
.-..+|..|+|+.|...|+++++--+.. . ..+...|.++.+++++.+|+..|.+++++ .
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~ 287 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------D 287 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------C
Confidence 3446899999999999999987763311 1 13445577788899999999999998775 6
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 001799 83 LMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQ 139 (1011)
Q Consensus 83 P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~A 139 (1011)
|++..+|+.-|.++..+|+|+.|+..|++|++.+|+|.++...+..+..+..++...
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEK 344 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999988888888777666655554
No 127
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3.5e-05 Score=84.58 Aligned_cols=127 Identities=10% Similarity=0.026 Sum_probs=110.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD 100 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg 100 (1011)
+..........+.-.+..|.++|++..-+.+.|.++.++|+++.|...|.++..+ .|++++.+..++.++....
T Consensus 131 ~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL------~g~n~~~~~g~aeaL~~~a 204 (287)
T COG4235 131 QPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL------AGDNPEILLGLAEALYYQA 204 (287)
T ss_pred cCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhc
Confidence 3345556777788889999999999999999999999999999999999999886 5888999999998765433
Q ss_pred ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc
Q 001799 101 ---RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE 153 (1011)
Q Consensus 101 ---~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ 153 (1011)
...++..++++|++.+|.|......|+..+...|+|++|...-..|++..|.+
T Consensus 205 ~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 205 GQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred CCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 34578999999999999999999999999999999999999888888887753
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.13 E-value=1e-05 Score=69.91 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=63.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHcC
Q 001799 85 DDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREY-SFVKQQQTAIKMYKHAG 151 (1011)
Q Consensus 85 D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~-d~~~Aqq~a~kL~K~~P 151 (1011)
++.+|..+|.++...|++++|+..|++|++.+|++..++..++.+|...| ++.+|.+.+.+.++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46889999999999999999999999999999999999999999999999 79999999999998887
No 129
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=2.6e-05 Score=85.17 Aligned_cols=106 Identities=11% Similarity=0.017 Sum_probs=96.1
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001799 52 KALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYV 131 (1011)
Q Consensus 52 KA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayv 131 (1011)
.|.=+...++|++|+..|.+|+++ .|+|+..+...+.+|..+|.|+.|++-.+.|+..+|....++-+++.+|.
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIEL------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 455577889999999999999887 68999999999999999999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 001799 132 REYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQ 164 (1011)
Q Consensus 132 r~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~ 164 (1011)
..|++.+|.+.+.+.+.+.|++.. +|..+..+
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~-~K~nL~~A 192 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNES-YKSNLKIA 192 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHH-HHHHHHHH
Confidence 999999999999999999999984 56554444
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.00011 Score=80.78 Aligned_cols=126 Identities=14% Similarity=0.067 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHH--HHHHhcCCcHHHHHH
Q 001799 101 RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSI--QLQVLCGNGGEKLLL 178 (1011)
Q Consensus 101 ~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl--~Lq~~~~~~a~klL~ 178 (1011)
..++.+.-.+.-+..+|+|.+-|..|+.+|++.+++..|..++.+.+++.|+++. .|...+. +.|. + .+.-.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~-~~~g~aeaL~~~a--~---~~~ta 210 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE-ILLGLAEALYYQA--G---QQMTA 210 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhc--C---CcccH
Confidence 3556677788889999999999999999999999999999999999999999986 3433333 3332 1 12334
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHH
Q 001799 179 LAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDK 233 (1011)
Q Consensus 179 LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~ 233 (1011)
.+..++++++..+| .+...+++++..+..+|+|++|...++..+....++.+.+
T Consensus 211 ~a~~ll~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 211 KARALLRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 67777888888888 7888999999999999999999999998886533344443
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=0.0006 Score=81.84 Aligned_cols=202 Identities=12% Similarity=0.008 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001799 46 PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMG 125 (1011)
Q Consensus 46 ~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~ 125 (1011)
.....+.+.++...|-..+|+.++++. ..|.....||...|+..+|...-.+-++++|+ +-++-.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d-~~lyc~ 462 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPD-PRLYCL 462 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCc-chhHHH
Confidence 345566677777777777777776642 44555666777777777777766666663333 333333
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 001799 126 LFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISI 205 (1011)
Q Consensus 126 Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~I 205 (1011)
++......--|++|-....... ....++|+.... .+ +-+..+.+.++...+.+| -..+.++.++-+
T Consensus 463 LGDv~~d~s~yEkawElsn~~s----arA~r~~~~~~~----~~-----~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ 528 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYIS----ARAQRSLALLIL----SN-----KDFSEADKHLERSLEINP-LQLGTWFGLGCA 528 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhh----HHHHHhhccccc----cc-----hhHHHHHHHHHHHhhcCc-cchhHHHhccHH
Confidence 3333222222222222111000 000111211100 01 114445555555556666 356677777777
Q ss_pred HHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 206 LEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 206 L~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
..+.++++.|.+.+...+. ..|++.+.|...+..|.+.|+-.+|...++++++-|-++|.+|.+|......
T Consensus 529 ALqlek~q~av~aF~rcvt-L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVT-LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred HHHHhhhHHHHHHHHHHhh-cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 7777777777777777763 3667777777777777777777777777777777777777777777654433
No 132
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.06 E-value=6.7e-05 Score=77.31 Aligned_cols=98 Identities=19% Similarity=0.235 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNS---PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~---~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+....-+...|++++|+..++++++..|+. ..++...|.++.++|++++|+..+++++.. .|.+..++..+
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l 112 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL------NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcccHHHHHHH
Confidence 444556778999999999999999987764 468899999999999999999999999775 58889999999
Q ss_pred HHHHHHcCCH--------------HHHHHHHHHHHHhCCCC
Q 001799 93 QIVFQRLDRL--------------DLATSCYEYACGKYHNN 119 (1011)
Q Consensus 93 g~~~~~lg~~--------------~eA~~~YekAlk~~P~n 119 (1011)
|.+|...|+. ++|.+.|+++++.+|+|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999884 45555555555556554
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.05 E-value=0.00024 Score=71.16 Aligned_cols=120 Identities=21% Similarity=0.242 Sum_probs=84.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNN---MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGE 174 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n---~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~ 174 (1011)
..++...+...++..++.+|+. ..+.+.++..++..|++++|...+.++....|++..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l------------------- 83 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPEL------------------- 83 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH-------------------
Confidence 4667777777777777777776 334456667777777777776665444433332211
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 175 KLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 175 klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
.....+.++.++..+|+|++|+..|+.... .+..+....++|+++.+.|++++|...|
T Consensus 84 --------------------~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y 141 (145)
T PF09976_consen 84 --------------------KPLARLRLARILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAY 141 (145)
T ss_pred --------------------HHHHHHHHHHHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 012345567888899999999999987532 3445666788999999999999999999
Q ss_pred HHHH
Q 001799 255 KKIL 258 (1011)
Q Consensus 255 ~kaL 258 (1011)
+++|
T Consensus 142 ~~Al 145 (145)
T PF09976_consen 142 QKAL 145 (145)
T ss_pred HHhC
Confidence 9875
No 134
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.04 E-value=1.4e-05 Score=68.69 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=49.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
++..|+|++|++.++++++.+|+++.++...|.++.+.|++++|.+.+.+++.. .|+++..+.+++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ------DPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG------GTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCHHHHHHHHhc
Confidence 467788888888888888888888888888888888888888888887775432 4666666666553
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0004 Score=87.33 Aligned_cols=223 Identities=12% Similarity=0.008 Sum_probs=165.4
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001799 41 KYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNM 120 (1011)
Q Consensus 41 k~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~ 120 (1011)
-.|.+..++-....++.+.|++++|+++|+.+++. .|+...+++.+|.++...++++++..+ .++...|.+.
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 36888889888888999999999999999988664 688999999999999999998877665 6666555555
Q ss_pred -------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 001799 121 -------------------DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAE 181 (1011)
Q Consensus 121 -------------------el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAe 181 (1011)
.+++.++.+|-+.|+++++-.+..++++.+|+++. ..+.++.++... +-+++..++.
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~-aLNn~AY~~ae~---dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE-IVKKLATSYEEE---DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHh---hHHHHHHHHH
Confidence 89999999999999999999999999999999975 444445444222 2334444555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHhhhcccC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 182 GLLKKHVASHSLHEPEALIVYISILEQQ-SKYGDALEILSGTLGSLL-VIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 259 (1011)
Q Consensus 182 k~Lekai~~~p~~~~eel~l~~~IL~~q-gk~eEAL~~L~~~l~~~~-~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~ 259 (1011)
+.+.+.+..+ +..+...+...++... .+.+.-+.+++...+... ..-.+.+...-..|.+.++|++++.+++.+|+
T Consensus 174 KAV~~~i~~k--q~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 174 KAIYRFIKKK--QYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHHHhhh--cchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 5555444434 3344444445555433 356666666666654311 12234455555788999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHhc
Q 001799 260 LSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 260 ~nPDdw~~~~~yl~all~ 277 (1011)
.+|+|..+...+++++..
T Consensus 252 ~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 252 HDNKNNKAREELIRFYKE 269 (906)
T ss_pred cCCcchhhHHHHHHHHHH
Confidence 999999999999988764
No 136
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.01 E-value=2e-05 Score=67.41 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
.+|..+...|++++|++.|+++++.+|++.+++..++.++.+.|++.+|...+.++.+..|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5788999999999999999999999999999999999999999999999999999999999875
No 137
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.99 E-value=0.00045 Score=84.91 Aligned_cols=240 Identities=11% Similarity=0.067 Sum_probs=169.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHH--------------------------HHHHHHHHHCCChHHHHHHHHHHHHhh
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYAL--------------------------ALKALVLERMGKCDESLSVSLQAKDLL 76 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~--------------------------aLKA~aL~rlgk~dEAl~l~~~alelL 76 (1011)
++..+|+.|...++.+...+-|++... .+-+.++. ++....|+..+-+++.+
T Consensus 410 ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~-rK~~~~al~ali~alrl- 487 (1238)
T KOG1127|consen 410 IEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCM-RKNSALALHALIRALRL- 487 (1238)
T ss_pred HHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhc-
Confidence 566788888888888777763332110 00111111 24467777777777554
Q ss_pred hhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc-HH
Q 001799 77 YQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE-RF 155 (1011)
Q Consensus 77 ~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~-ry 155 (1011)
.|+-..++..||.+|+...+...|.++|.+|..++|.+.+.+......|++..+|+.|..+....-...|.. +-
T Consensus 488 -----d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 488 -----DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 577888999999999999988899999999999999999999999999999999999988743333333322 12
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHH
Q 001799 156 LLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLR 235 (1011)
Q Consensus 156 ~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~ 235 (1011)
..|--.+.+. ....+.-++..-++. +...+| .+...+.-++++|.+.|+|.-|++.++++. .+.|.+.-..+
T Consensus 563 ~nW~~rG~yy--Lea~n~h~aV~~fQs----ALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs-~LrP~s~y~~f 634 (1238)
T KOG1127|consen 563 ENWVQRGPYY--LEAHNLHGAVCEFQS----ALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKAS-LLRPLSKYGRF 634 (1238)
T ss_pred hhhhhccccc--cCccchhhHHHHHHH----HhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhH-hcCcHhHHHHH
Confidence 2454444443 111111122333333 234566 788899999999999999999999999885 33676666667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 236 MQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 236 l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
..|.+..-.|+|.+|.+.+..++..-.+.-.+...+..+.+.
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 788888899999999999999998765555555555555543
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.97 E-value=0.056 Score=66.86 Aligned_cols=92 Identities=12% Similarity=-0.066 Sum_probs=76.7
Q ss_pred HHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 001799 57 ERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSF 136 (1011)
Q Consensus 57 ~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~ 136 (1011)
...+++..|++.+.+.+.. .|+-.-+...-+.++.++|++++|..+.+..-...|++...+.-+-.+|.+.+.+
T Consensus 20 ld~~qfkkal~~~~kllkk------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 4568899999999987543 6877778888888999999999999888877667777666666677889999999
Q ss_pred HHHHHHHHHHHHHcCCcH
Q 001799 137 VKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 137 ~~Aqq~a~kL~K~~P~~r 154 (1011)
.++...+.+..+.+|+..
T Consensus 94 d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEE 111 (932)
T ss_pred hHHHHHHHHHHhhCCcHH
Confidence 999999999999999843
No 139
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.96 E-value=0.00015 Score=80.13 Aligned_cols=103 Identities=11% Similarity=-0.051 Sum_probs=90.0
Q ss_pred HHHHHHHHHH-HHCCChHHHHHHHHHHHHhhhhCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q 001799 47 YALALKALVL-ERMGKCDESLSVSLQAKDLLYQNDSTLMD---DLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN--- 119 (1011)
Q Consensus 47 ~a~aLKA~aL-~rlgk~dEAl~l~~~alelL~~d~~~P~D---~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n--- 119 (1011)
...+..|..+ .+.|++++|+..+++.++. .|++ +.+++.+|.+|...|++++|+..|+++++.+|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 4567777776 5679999999999988664 4554 6899999999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 120 MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 120 ~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
+++++.++.+|...|++.+|.+.+.++.+.+|+..+
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 678888899999999999999999999999999865
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00019 Score=73.51 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNS---PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~---~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+.-...+...|+|.+|+..++++++..|++ +.++...|.++...|++++|+..+++++.+ .|....++..+
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~------~~~~~~~~~~l 112 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER------NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCcHHHHHHH
Confidence 455566778999999999999999998774 458889999999999999999999999765 57778889999
Q ss_pred HHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCHH
Q 001799 93 QIVFQ-------RLDRLD-------LATSCYEYACGKYHNNMD 121 (1011)
Q Consensus 93 g~~~~-------~lg~~~-------eA~~~YekAlk~~P~n~e 121 (1011)
|.++. ..|+++ +|...|++++..+|++..
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 99998 777766 667777788888887653
No 141
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.088 Score=61.02 Aligned_cols=237 Identities=13% Similarity=0.057 Sum_probs=168.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLD 103 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~ 103 (1011)
+++.+..|-..++++|..+-.+...+.--+..-.+......|..+.+.|+.++ |.=+..|+.+..+=..+|+..
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l------PRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL------PRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc------chHHHHHHHHHHHHHHhcccH
Confidence 45667778889999999888887777777888888899999999999998875 556788988888888899999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC--cHHHHHHHHH
Q 001799 104 LATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGN--GGEKLLLLAE 181 (1011)
Q Consensus 104 eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~--~a~klL~LAe 181 (1011)
-|..+|++.+.-.|+ .+++......-+|..++..|..++.+..-..|+-. .|.-.+-+- ..+++ .+..++..|.
T Consensus 159 gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~--~wikyarFE-~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS--NWIKYARFE-EKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH--HHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 999999999999998 67888888888899999999998888887778754 233333221 12332 1233344443
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh-HHHHHHHHHHHH-HcCCHHHHHH-------
Q 001799 182 GLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE-VDKLRMQGRLLA-RQGDYTAAAQ------- 252 (1011)
Q Consensus 182 k~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~-~~~l~l~a~ll~-klg~~eeA~~------- 252 (1011)
..+. +...+.--+..++..-+.|+.++.|.-++.-++.. +|.. ..-++..-..+. +-|+.....+
T Consensus 235 e~~~-----~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 235 EFLG-----DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 3331 11122234445567777889999999999988865 6643 443433222333 3465543332
Q ss_pred -HHHHHHHhCCCCHHHHHHHHHHHh
Q 001799 253 -IYKKILELSPDDWECFLHYLGCLL 276 (1011)
Q Consensus 253 -~~~kaL~~nPDdw~~~~~yl~all 276 (1011)
-|++.+..||-|++.|..|+...-
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e 333 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEE 333 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHH
Confidence 478899999999999999997543
No 142
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.89 E-value=0.0033 Score=68.07 Aligned_cols=199 Identities=13% Similarity=0.057 Sum_probs=108.1
Q ss_pred CCchHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCc
Q 001799 9 GGIPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPY---ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMD 85 (1011)
Q Consensus 9 ~~v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~---a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D 85 (1011)
+.+.+-...++.+.++.|||++|.+.++++.+.+|.+++ +....+.++++.+++++|+..++.-+.+-+ ..|+=
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP---~~~n~ 107 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP---THPNA 107 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCCh
Confidence 444555566777777777777777777777777777654 444555555555555555555554433311 12222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 001799 86 DLTLSTLQIVFQRLDRLDLATSCYEYACGKYHN-NMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQ 164 (1011)
Q Consensus 86 ~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~-n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~ 164 (1011)
+-++++.|.+ .| ..+ .+++ |... -..|...+..+...+|+.+|.--
T Consensus 108 dY~~YlkgLs------------~~-~~i-~~~~rDq~~-------------~~~A~~~f~~~i~ryPnS~Ya~d------ 154 (254)
T COG4105 108 DYAYYLKGLS------------YF-FQI-DDVTRDQSA-------------ARAAFAAFKELVQRYPNSRYAPD------ 154 (254)
T ss_pred hHHHHHHHHH------------Hh-ccC-CccccCHHH-------------HHHHHHHHHHHHHHCCCCcchhh------
Confidence 2223333322 00 000 0111 1111 12334444566778898887211
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCC---hHHHHHHHHHHH
Q 001799 165 LQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVI---EVDKLRMQGRLL 241 (1011)
Q Consensus 165 Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~---~~~~l~l~a~ll 241 (1011)
++..+..+...+. +-=+..++.+.+.|.|-.|...++..+.. .+. ..+.+..+..+|
T Consensus 155 --------A~~~i~~~~d~LA-----------~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY 214 (254)
T COG4105 155 --------AKARIVKLNDALA-----------GHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAY 214 (254)
T ss_pred --------HHHHHHHHHHHHH-----------HHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHH
Confidence 1111111111110 01133567888999999999998888764 443 234577777889
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 001799 242 ARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 242 ~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
..+|-.++|.. ..++|..|+.|
T Consensus 215 ~~lgl~~~a~~-~~~vl~~N~p~ 236 (254)
T COG4105 215 YALGLTDEAKK-TAKVLGANYPD 236 (254)
T ss_pred HHhCChHHHHH-HHHHHHhcCCC
Confidence 99999999877 55666666443
No 143
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.88 E-value=0.0055 Score=78.03 Aligned_cols=224 Identities=14% Similarity=0.175 Sum_probs=164.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH----HHHHHHHHHHHcCCHHHHH
Q 001799 31 ALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL----TLSTLQIVFQRLDRLDLAT 106 (1011)
Q Consensus 31 AL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~----al~~Lg~~~~~lg~~~eA~ 106 (1011)
-...+++.+.-+||+...|..--.-....+..++|.+++++|+..+ ++...+ .|..+-.....-|.-+.-.
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tI-----N~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTI-----NFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhC-----CcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 4557788999999998777655555667899999999999986542 333333 3333333333445556678
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 001799 107 SCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKK 186 (1011)
Q Consensus 107 ~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lek 186 (1011)
++|++|++..-. ..++..|.-.|.....+.+|-+....|.|.|.+.+- .|...+.++... ++++ .|...+.+
T Consensus 1518 kVFeRAcqycd~-~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~-vW~~y~~fLl~~--ne~~----aa~~lL~r 1589 (1710)
T KOG1070|consen 1518 KVFERACQYCDA-YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRK-VWIMYADFLLRQ--NEAE----AARELLKR 1589 (1710)
T ss_pred HHHHHHHHhcch-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhh-HHHHHHHHHhcc--cHHH----HHHHHHHH
Confidence 899999975433 568889999999999999999999999999996654 787666665322 2222 23334444
Q ss_pred HHhcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Q 001799 187 HVASHS-LHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS--PD 263 (1011)
Q Consensus 187 ai~~~p-~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~n--PD 263 (1011)
+++.-| -+..+-+-.++++-.+.|+.+.+..++++.+.. .|.+.+.|....+.-.+.|+.+-+..+|++++.++ |.
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 444333 135667777888888999999999999999865 88899989888889999999999999999999864 55
Q ss_pred CHHHH
Q 001799 264 DWECF 268 (1011)
Q Consensus 264 dw~~~ 268 (1011)
...++
T Consensus 1669 kmKff 1673 (1710)
T KOG1070|consen 1669 KMKFF 1673 (1710)
T ss_pred HhHHH
Confidence 54443
No 144
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.88 E-value=4.2e-05 Score=65.78 Aligned_cols=59 Identities=15% Similarity=0.215 Sum_probs=39.1
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
...|++++|+..|+++++.+|+|.++...++.+|++.|++.+|.+...++.+.+|+++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 60 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE 60 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence 34566667777777777777777766667777777777777776666666666666543
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0047 Score=66.84 Aligned_cols=240 Identities=13% Similarity=0.032 Sum_probs=161.8
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
..+-.|-.+|-.|||.+++....+.-.. +..+...+.++.++..+|++..-+...+.+ ..+.-.+...++
T Consensus 10 d~LF~iRn~fY~Gnyq~~ine~~~~~~~-~~~~e~d~y~~raylAlg~~~~~~~eI~~~---------~~~~lqAvr~~a 79 (299)
T KOG3081|consen 10 DELFNIRNYFYLGNYQQCINEAEKFSSS-KTDVELDVYMYRAYLALGQYQIVISEIKEG---------KATPLQAVRLLA 79 (299)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHcccccccccccccc---------cCChHHHHHHHH
Confidence 4566677889999999999999988665 488888999999999999987765543321 122345555666
Q ss_pred HHHHHcCCHHH-HHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC
Q 001799 94 IVFQRLDRLDL-ATSCYEYACGKYHNNM-DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGN 171 (1011)
Q Consensus 94 ~~~~~lg~~~e-A~~~YekAlk~~P~n~-el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~ 171 (1011)
..+..-++.++ -.++++......-++. -.+..-+..|+..+++.+|.++.. ...+-.-....+....
T Consensus 80 ~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~----~~~~lE~~Al~VqI~l------- 148 (299)
T KOG3081|consen 80 EYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALH----LGENLEAAALNVQILL------- 148 (299)
T ss_pred HHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHh----ccchHHHHHHHHHHHH-------
Confidence 65555555454 3455676665555544 344456688999999998876522 2111111111111111
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCH
Q 001799 172 GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISIL----EQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDY 247 (1011)
Q Consensus 172 ~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL----~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~ 247 (1011)
...-+++|++.++++.+.+ +...+.-+++.+ ..-+++.+|.=+++..-++ .+..+..+.-+|.+...+|+|
T Consensus 149 -k~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 149 -KMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred -HHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 0122568888888766533 233333344333 3345889999999988543 666666676778999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 001799 248 TAAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 248 eeA~~~~~kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
++|....+.+|..++.+++++.+++-+....+
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988877654
No 146
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.87 E-value=0.0026 Score=72.09 Aligned_cols=227 Identities=19% Similarity=0.194 Sum_probs=168.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
+...--.++.|+|..|..-++++++..|.++..+-+...+|.+.|...+...+..+..+. ..-+|++.-..-.++
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-----~~l~~~e~~~le~~a 231 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-----GLLSDEEAARLEQQA 231 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-----cCCChHHHHHHHHHH
Confidence 444445789999999999999999999999999999999999999999999988764321 134555554433333
Q ss_pred ----HHHcCCHHHHHH---HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Q 001799 96 ----FQRLDRLDLATS---CYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVL 168 (1011)
Q Consensus 96 ----~~~lg~~~eA~~---~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~ 168 (1011)
+.+..+...+.. .|++.-.+--+++++...++.-+++.|+..+|++.....+|..-+++- +..+- ..
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-----~~~~~-~l 305 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-----CRLIP-RL 305 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH-----HHHHh-hc
Confidence 333333333333 454443444456778899999999999999999999988887766651 22221 23
Q ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHH
Q 001799 169 CGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYT 248 (1011)
Q Consensus 169 ~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~e 248 (1011)
.+.++.++...+++.++ ..| +++..+..+++++.+++.|.+|-++++.++.. -++ ..-+...|..+.++|+.+
T Consensus 306 ~~~d~~~l~k~~e~~l~----~h~-~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s-~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 306 RPGDPEPLIKAAEKWLK----QHP-EDPLLLSTLGRLALKNKLWGKASEALEAALKL-RPS-ASDYAELADALDQLGEPE 378 (400)
T ss_pred CCCCchHHHHHHHHHHH----hCC-CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCC-hhhHHHHHHHHHHcCChH
Confidence 34456677777777665 456 67788999999999999999999999999853 333 334667899999999999
Q ss_pred HHHHHHHHHHHh
Q 001799 249 AAAQIYKKILEL 260 (1011)
Q Consensus 249 eA~~~~~kaL~~ 260 (1011)
+|.+.++++|..
T Consensus 379 ~A~~~r~e~L~~ 390 (400)
T COG3071 379 EAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999999964
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00049 Score=77.93 Aligned_cols=180 Identities=17% Similarity=0.066 Sum_probs=134.2
Q ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 001799 31 ALKQSTALLAKY---PNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATS 107 (1011)
Q Consensus 31 AL~l~dklLKk~---P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~ 107 (1011)
|+..++++...+ |-..-+..+|+.++.-+|++++|....-.++.+ .+++.+++.+-|.++.-.++.+.|+.
T Consensus 151 al~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl------d~~n~~al~vrg~~~yy~~~~~ka~~ 224 (486)
T KOG0550|consen 151 ALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL------DATNAEALYVRGLCLYYNDNADKAIN 224 (486)
T ss_pred hhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc------ccchhHHHHhcccccccccchHHHHH
Confidence 444444443332 333468899999999999999999987666554 68899999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHH------------HHHHHHHHhcCHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHhcCC
Q 001799 108 CYEYACGKYHNNMDHMM------------GLFNCYVREYSFVKQQQTAIKMYKHAGEER----FLLWAVCSIQLQVLCGN 171 (1011)
Q Consensus 108 ~YekAlk~~P~n~el~~------------~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r----y~~Wai~sl~Lq~~~~~ 171 (1011)
.|+++++.+|+..+.-. .-+.-..+.|+|.+|...+...+++.|++. ..+|+.........+
T Consensus 225 hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr-- 302 (486)
T KOG0550|consen 225 HFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR-- 302 (486)
T ss_pred HHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--
Confidence 99999999998776543 334456788999999999999999999854 334544433321111
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Q 001799 172 GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLG 224 (1011)
Q Consensus 172 ~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~ 224 (1011)
+..|..-.+.++..++ ....+++..+..+...++|++|.+.++++..
T Consensus 303 -----l~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 303 -----LREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred -----chhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2233344444555666 5667888889999999999999999999864
No 148
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0085 Score=69.05 Aligned_cols=241 Identities=14% Similarity=0.135 Sum_probs=167.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHH--HHCCChHHHHHHHHHHHHhhhhCCCCCCc--HHHHHHHHHHHHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYA-LALKALVL--ERMGKCDESLSVSLQAKDLLYQNDSTLMD--DLTLSTLQIVFQR 98 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a-~aLKA~aL--~rlgk~dEAl~l~~~alelL~~d~~~P~D--~~al~~Lg~~~~~ 98 (1011)
..|+..-|.+.+++++....++..+ ...-|.+. .+...++.|..+++=|++.+ |.+ .+....+...=..
T Consensus 219 k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~------pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 219 KHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI------PKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred hcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHH
Confidence 4688888999999988887776443 23344443 45678888888888887764 333 3344444445555
Q ss_pred cCCHH---HHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC---c----HH-HHHHHHH
Q 001799 99 LDRLD---LATS-----CYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE---E----RF-LLWAVCS 162 (1011)
Q Consensus 99 lg~~~---eA~~-----~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~---~----ry-~~Wai~s 162 (1011)
.|+.. +++- -|+.-++.+|-|.+.+..+...--..|+-+.-.+++.+.....|- . || |.|...+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 66544 3332 389999999999999988888888889999888888888876663 1 22 5676666
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHH
Q 001799 163 IQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLA 242 (1011)
Q Consensus 163 l~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~ 242 (1011)
++-.... .+.+..-......++ .+.-..|..+-.+++|++...+|.+...|.++|-.++|. .|.+-- ..-.-.+-.
T Consensus 373 lyeEle~-ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~-cPK~Kl-Fk~YIelEl 448 (677)
T KOG1915|consen 373 LYEELEA-EDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK-CPKDKL-FKGYIELEL 448 (677)
T ss_pred HHHHHHh-hhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc-CCchhH-HHHHHHHHH
Confidence 6542211 111111112222222 334455667789999999999999999999999999985 665431 111125667
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 243 RQGDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 243 klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
++++++....+|++.|+-.|.|-..|..|...
T Consensus 449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 78999999999999999999999999988643
No 149
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.81 E-value=0.0035 Score=80.99 Aligned_cols=236 Identities=14% Similarity=0.095 Sum_probs=132.7
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCC--CCCCcHHHHHHHH
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNS------PYALALKALVLERMGKCDESLSVSLQAKDLLYQND--STLMDDLTLSTLQ 93 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~------~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~--~~P~D~~al~~Lg 93 (1011)
+...|++++|...+++++...... ..+....|.++...|++++|...+.++++...... ..+.....+..++
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 345677777777777776543221 12334556667777777777777777665432110 0122233445667
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH-HHHH-HHH---HH
Q 001799 94 IVFQRLDRLDLATSCYEYACGKYHN-----NMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER-FLLW-AVC---SI 163 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~~P~-----n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r-y~~W-ai~---sl 163 (1011)
.++...|++++|...+++++..... ....+..++..+...|++..|.....++....+... ...| ... ..
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 7777777777777777777664221 112223455667777777777766666554433221 1111 110 00
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--CC---ChHHHHH
Q 001799 164 QLQVLCGNGGEKLLLLAEGLLKKHVASHSLH---EPEALIVYISILEQQSKYGDALEILSGTLGSL--LV---IEVDKLR 235 (1011)
Q Consensus 164 ~Lq~~~~~~a~klL~LAek~Lekai~~~p~~---~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~--~~---~~~~~l~ 235 (1011)
......+ . ...|...+........-. .......++.++..+|++++|...++..+... .. .....+.
T Consensus 661 ~~~~~~g-~----~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 661 IYWQMTG-D----KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHCC-C----HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 1101111 1 112223332221111100 11224577899999999999999999876321 11 1233466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 001799 236 MQGRLLARQGDYTAAAQIYKKILELSP 262 (1011)
Q Consensus 236 l~a~ll~klg~~eeA~~~~~kaL~~nP 262 (1011)
..|..+...|++++|...+.++++...
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 778999999999999999999998753
No 150
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.096 Score=58.71 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQ 166 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq 166 (1011)
.+-.-++.|+..+|+|++|...|+.+...+--+.+++..++-++.-.|.|.+|++++.+ -|++|-.....+-+.+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlah- 132 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAH- 132 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHH-
Confidence 34445788888888888888888888776655677888888888888888888776544 3565532222222222
Q ss_pred HhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCC
Q 001799 167 VLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGD 246 (1011)
Q Consensus 167 ~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~ 246 (1011)
.-++.++.+..-+.+- ++.|..+-++.+....-.|+||++++.+.+.. .|.-...-...|.+|.|+.-
T Consensus 133 --klndEk~~~~fh~~Lq---------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-n~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 133 --KLNDEKRILTFHSSLQ---------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-NPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred --HhCcHHHHHHHHHHHh---------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChhhhhhHHHHHHHHHhcch
Confidence 1122233333222111 23345555666766677899999999999743 33333334446889999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 247 YTAAAQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 247 ~eeA~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
|+-+.++.+-.|...||..-+....+--.+.
T Consensus 201 ydvsqevl~vYL~q~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 201 YDVSQEVLKVYLRQFPDSTIAKNLKACNLFR 231 (557)
T ss_pred hhhHHHHHHHHHHhCCCcHHHHHHHHHHHhh
Confidence 9999999999999999987776644433333
No 151
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.77 E-value=0.016 Score=58.02 Aligned_cols=226 Identities=24% Similarity=0.198 Sum_probs=165.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH
Q 001799 25 SRQFKNALKQSTALLAKYPNS--PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL 102 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~--~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~ 102 (1011)
.+.+..+...+...+...+.. .......+..+...+++..+...+...... ...+.....+..++..+...+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhH
Confidence 578888999999999998874 778888999999999999999988876541 01467788899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHcCC--cH-HHHHHHHHHHHHHhcCCcHHHHHH
Q 001799 103 DLATSCYEYACGKYHNNMDHMMGLFN-CYVREYSFVKQQQTAIKMYKHAGE--ER-FLLWAVCSIQLQVLCGNGGEKLLL 178 (1011)
Q Consensus 103 ~eA~~~YekAlk~~P~n~el~~~Lf~-ayvr~~d~~~Aqq~a~kL~K~~P~--~r-y~~Wai~sl~Lq~~~~~~a~klL~ 178 (1011)
.++...+.++....|.+......... ++...+++..+...+.+.....|. .. ...+..... .. ..+ . ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~-~----~~ 184 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL-LE-ALG-R----YE 184 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH-HH-Hhc-C----HH
Confidence 99999999999988886444445555 789999999999998888776663 22 111111111 11 111 1 23
Q ss_pred HHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 001799 179 LAEGLLKKHVASHSLH-EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKI 257 (1011)
Q Consensus 179 LAek~Lekai~~~p~~-~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~ka 257 (1011)
.+...+.+.....+ . ........+..+...+++++|...+...+.. .+.....+...+..+...++++++...+.++
T Consensus 185 ~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 185 EALELLEKALKLNP-DDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred HHHHHHHHHHhhCc-ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh-CcccHHHHhhHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444444444 3 4567778888999999999999999998753 4443333455565555788899999999999
Q ss_pred HHhCCC
Q 001799 258 LELSPD 263 (1011)
Q Consensus 258 L~~nPD 263 (1011)
+..+|+
T Consensus 263 ~~~~~~ 268 (291)
T COG0457 263 LELDPD 268 (291)
T ss_pred HHhCcc
Confidence 999987
No 152
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.76 E-value=0.00013 Score=63.67 Aligned_cols=53 Identities=23% Similarity=0.332 Sum_probs=33.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDL 75 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alel 75 (1011)
+..++|.+|++.++++++.+|+++.++..+|.++.++|++++|.+.++++++.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666665543
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=97.76 E-value=0.00033 Score=81.35 Aligned_cols=122 Identities=11% Similarity=-0.023 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 27 QFKNALKQSTALL---AKYPNSPYALALKALVLERM---------GKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 27 n~KqAL~l~dklL---Kk~P~~~~a~aLKA~aL~rl---------gk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
..++|+.++++++ ..+|+...++++.|.++... ....+|..+.++++++ .|.|+.++..+|.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel------d~~Da~a~~~~g~ 346 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI------TTVDGKILAIMGL 346 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc------CCCCHHHHHHHHH
Confidence 5678999999999 89999999999999998763 2345677788888775 7999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 95 VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
++.-.++++.|...|++|+..+|+...+++..+....-.|+...|.+...+..++.|...
T Consensus 347 ~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 347 ITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred HHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 999999999999999999999999999999999999999999999999999999999754
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.0026 Score=70.74 Aligned_cols=88 Identities=15% Similarity=0.027 Sum_probs=46.3
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNS-PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~-~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
++-.+-|.+.+.+|.-|+.+.+-.+-.+... .....+.|.+++++|++++|+..+..+.+ + ...+.+.+..|+
T Consensus 25 K~P~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~---~---~~~~~el~vnLA 98 (557)
T KOG3785|consen 25 KMPELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN---K---DDAPAELGVNLA 98 (557)
T ss_pred cCchHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc---c---CCCCcccchhHH
Confidence 3334556666666666666666655332222 23556666666667777776666654322 1 112334444455
Q ss_pred HHHHHcCCHHHHHHH
Q 001799 94 IVFQRLDRLDLATSC 108 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~ 108 (1011)
-|+.-+|.|.+|...
T Consensus 99 cc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 99 CCKFYLGQYIEAKSI 113 (557)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554444
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=97.74 E-value=0.00033 Score=71.13 Aligned_cols=130 Identities=17% Similarity=0.082 Sum_probs=97.5
Q ss_pred hHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH
Q 001799 12 PERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLST 91 (1011)
Q Consensus 12 ~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~ 91 (1011)
.++-...|++++..|---+. +.-..++.....+--|+-+++.|++++|..+++-..- -.|.+.+.|..
T Consensus 9 ~~~~~~~i~~al~~G~tlk~------l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~------~d~~n~~Y~~G 76 (165)
T PRK15331 9 EERVAEMIWDAVSEGATLKD------VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCI------YDFYNPDYTMG 76 (165)
T ss_pred HHHHHHHHHHHHHCCCCHHH------HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------hCcCcHHHHHH
Confidence 34556678888887743222 2233444556677778888899999999988875422 25888888889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 92 LQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 92 Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
||-|+..+++|++|+..|..|...+++|+...++.+++|+..++...|.+.+..... .|...
T Consensus 77 Laa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 77 LAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 999999999999999999999888888888888999999999999988887655554 45543
No 156
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.74 E-value=0.00025 Score=79.44 Aligned_cols=122 Identities=16% Similarity=0.087 Sum_probs=86.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcC--
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD-- 100 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg-- 100 (1011)
+..|+++.|++.+.+. ++.+..++...++.++||++.|.+.++...+. ...+..+....+|+....|
T Consensus 113 ~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~------~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQI------DEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp CCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC------SCCHHHHHHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcHHHHHHHHHHHHHHhCch
Confidence 4578888888887653 67788888888888999999988888765322 2223333334455544444
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 101 RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 101 ~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
.+.+|...|+.....+|.+..++...+.+++..|+|.+|+....+.+..+|+++.
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 5888888888888888888888888888889999999998888877777888775
No 157
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.74 E-value=0.00054 Score=68.16 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=65.5
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPY---ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL 87 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~---a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~ 87 (1011)
..+...+...++++.|+|+.|++.++.+...+|-.++ +....+.+++..|++++|++.++.-+++-+ ..|.=+-
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP---~hp~vdY 85 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP---THPNVDY 85 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCCCccH
Confidence 4456678888999999999999999999999998764 567777888888888888888887766532 3444445
Q ss_pred HHHHHHHHHHHcCC
Q 001799 88 TLSTLQIVFQRLDR 101 (1011)
Q Consensus 88 al~~Lg~~~~~lg~ 101 (1011)
+++..|.++.....
T Consensus 86 a~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 86 AYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHHhh
Confidence 66677766665544
No 158
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.73 E-value=0.00031 Score=84.22 Aligned_cols=232 Identities=16% Similarity=0.073 Sum_probs=141.2
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+|.+.++ .+..|=-|.|+..+++. +.+.-+..+|..+|+...|..+..+-++ .|.|+..|-.+
T Consensus 401 q~~lael--l~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-------k~~d~~lyc~L 463 (777)
T KOG1128|consen 401 QRLLAEL--LLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-------KDPDPRLYCLL 463 (777)
T ss_pred HHHHHHH--HHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-------CCCcchhHHHh
Confidence 3444444 36677777777777764 4455567777788877777777665322 25566777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHhcCC
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSI-QLQVLCGN 171 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl-~Lq~~~~~ 171 (1011)
|.+....--|++|.++... .+..+.+.|+....+.++|.++-+....-.+++|-... -|..++. ++|..+-
T Consensus 464 GDv~~d~s~yEkawElsn~------~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~-~wf~~G~~ALqlek~- 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNY------ISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLG-TWFGLGCAALQLEKE- 535 (777)
T ss_pred hhhccChHHHHHHHHHhhh------hhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchh-HHHhccHHHHHHhhh-
Confidence 7776554434444333322 13335566776667778888777777666677776543 3433333 3443321
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHH
Q 001799 172 GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAA 251 (1011)
Q Consensus 172 ~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~ 251 (1011)
..|-+...+.+..+| .+.+++..+...+.+.|+..+|...+..+++- ...+...|...-.+..+.|.|++|+
T Consensus 536 ------q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 536 ------QAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-NYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred ------HHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-CCCCCeeeechhhhhhhcccHHHHH
Confidence 223334444456677 67788888888888888888888888888753 2334444444445667788888888
Q ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHhc
Q 001799 252 QIYKKILELS--PDDWECFLHYLGCLLE 277 (1011)
Q Consensus 252 ~~~~kaL~~n--PDdw~~~~~yl~all~ 277 (1011)
.+|.+++... -.|..+.........+
T Consensus 608 ~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 608 KAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 8888888753 2244444444444433
No 159
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.73 E-value=0.00043 Score=67.38 Aligned_cols=98 Identities=17% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 001799 47 YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHN---NMDHM 123 (1011)
Q Consensus 47 ~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~---n~el~ 123 (1011)
.+.+..|.++-.+|+.++|+.+|+++++. +...+.-..++..+|.+|+.+|++++|..++++++...|+ +..+.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~---gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA---GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 46778899999999999999999999763 2223444668889999999999999999999999999998 66677
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 124 MGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 124 ~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
.-+.++....|++++|...+....
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777788899999999988765443
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=0.00013 Score=65.84 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=68.7
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 001799 59 MGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVK 138 (1011)
Q Consensus 59 lgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~ 138 (1011)
.|++++|+..++++++..+. .| +...+..+|.+|...|+|++|+..+++ .+.+|.+.+..+.++.++...|+|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 58899999999998775221 12 677888899999999999999999999 88999988888899999999999999
Q ss_pred HHHHHHH
Q 001799 139 QQQTAIK 145 (1011)
Q Consensus 139 Aqq~a~k 145 (1011)
|.+...+
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887543
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.67 E-value=0.0029 Score=65.05 Aligned_cols=130 Identities=19% Similarity=0.255 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYACG-KYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQV 167 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAlk-~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~ 167 (1011)
...|+..+.++|++.||...|++++. .+.++..++..++++....+++..+++...++.+.+|.-
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~-------------- 157 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF-------------- 157 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc--------------
Confidence 45678888888888888888888765 566777788888888888888888877766555444321
Q ss_pred hcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCH
Q 001799 168 LCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDY 247 (1011)
Q Consensus 168 ~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~ 247 (1011)
.+++-.++|+++|..+|++++|...++-++.- .|....+ ...+..+.++|+.
T Consensus 158 --------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-ypg~~ar-~~Y~e~La~qgr~ 209 (251)
T COG4700 158 --------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISY-YPGPQAR-IYYAEMLAKQGRL 209 (251)
T ss_pred --------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHh-CCCHHHH-HHHHHHHHHhcch
Confidence 33445677888888888888888888887643 4543332 2347788888888
Q ss_pred HHHHHHHHHHHHh
Q 001799 248 TAAAQIYKKILEL 260 (1011)
Q Consensus 248 eeA~~~~~kaL~~ 260 (1011)
.++..-+..+.+.
T Consensus 210 ~ea~aq~~~v~d~ 222 (251)
T COG4700 210 REANAQYVAVVDT 222 (251)
T ss_pred hHHHHHHHHHHHH
Confidence 8888777776653
No 162
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.00063 Score=73.99 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=126.4
Q ss_pred HHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 001799 56 LERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYS 135 (1011)
Q Consensus 56 L~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d 135 (1011)
+.+-.++++|++++..-.+ ..|..-..+.+||.||....+|.+|..+|++.....|+-.......++.....+.
T Consensus 20 lI~d~ry~DaI~~l~s~~E------r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELE------RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI 93 (459)
T ss_pred HHHHhhHHHHHHHHHHHHh------cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence 4566778888887665322 3677778899999999999999999999999999999876666667777788888
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH----hcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 001799 136 FVKQQQTAIKMYKHAGEERFLLWAVCSIQLQV----LCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSK 211 (1011)
Q Consensus 136 ~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~----~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk 211 (1011)
+..|.+.+..+... |+-+. -++-+|+ ..++ +.-+..+++..... .+.+.+...+-++.+.|+
T Consensus 94 ~ADALrV~~~~~D~-~~L~~-----~~lqLqaAIkYse~D-----l~g~rsLveQlp~e---n~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 94 YADALRVAFLLLDN-PALHS-----RVLQLQAAIKYSEGD-----LPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQ 159 (459)
T ss_pred cHHHHHHHHHhcCC-HHHHH-----HHHHHHHHHhccccc-----CcchHHHHHhccCC---Cccchhccchheeecccc
Confidence 88877764443221 22111 1111111 0111 22233333321111 245566777888889999
Q ss_pred hHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 212 YGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS 261 (1011)
Q Consensus 212 ~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~n 261 (1011)
|++|++-++.++.. -...+..-+..|.++...|+|+.|.++-.++++..
T Consensus 160 yEaAvqkFqaAlqv-sGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 160 YEAAVQKFQAALQV-SGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHHHHHhh-cCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 99999999999742 33455556777888999999999999999998864
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.65 E-value=0.00028 Score=61.50 Aligned_cols=66 Identities=18% Similarity=0.061 Sum_probs=56.4
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001799 53 ALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMM 124 (1011)
Q Consensus 53 A~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~ 124 (1011)
..++.+.+++++|++.++.++.+ .|.++..+..+|.++..+|++++|.+.|+++++..|++.++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35778889999999999988765 6888899999999999999999999999999999998876543
No 164
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.65 E-value=0.04 Score=71.32 Aligned_cols=236 Identities=16% Similarity=0.041 Sum_probs=145.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSP-----YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~-----~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
-++..|++.+|...+++++...|... .+....|.++...|++++|...+.++++.............++..++.+
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 45689999999999999998655432 2456677888899999999999999876533211111123456778999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC--cH--HHHHHHHHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHN--------NMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE--ER--FLLWAVCSI 163 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~--------n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~--~r--y~~Wai~sl 163 (1011)
+...|++++|...+++++..... ...+...++..+...|++..|...+.+....... .. ...+...+.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 99999999999999998875221 1123345667788889999998877766554321 11 111222222
Q ss_pred HHHHhcCC--cHHHHHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh---HHHHHH
Q 001799 164 QLQVLCGN--GGEKLLLLAEGLLKKHVASHSLHE--PEALIVYISILEQQSKYGDALEILSGTLGSLLVIE---VDKLRM 236 (1011)
Q Consensus 164 ~Lq~~~~~--~a~klL~LAek~Lekai~~~p~~~--~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~---~~~l~l 236 (1011)
+.. ..++ .+...+..+..+.. ....... ..........+..+|+.++|..++........... ...+..
T Consensus 621 ~~~-~~G~~~~A~~~l~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 621 ISL-ARGDLDNARRYLNRLENLLG---NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHH-HcCCHHHHHHHHHHHHHHHh---cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 221 2222 11122222222211 1111000 00111123445568999999999887653211111 112445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 237 QGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 237 ~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
.|.++...|++++|...+++++..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788999999999999999999985
No 165
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.57 E-value=0.0019 Score=79.64 Aligned_cols=182 Identities=12% Similarity=-0.004 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001799 27 QFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLAT 106 (1011)
Q Consensus 27 n~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~ 106 (1011)
+-+.|+..+-+.++++|+...+....|.++...-+...|...+++|.++ +|+|.+++...+.+|.+....++|.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL------Datdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL------DATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CchhhhhHHHHHHHhhccccHHHHH
Confidence 3555566666666666666666666666655555555566666655443 4555555555555555555555555
Q ss_pred HHHHHHHHhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001799 107 SCYEYACGKYHNN--MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLL 184 (1011)
Q Consensus 107 ~~YekAlk~~P~n--~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~L 184 (1011)
...-++-++.|.. .+.+.+.+-.|...+++-.+.-.+...++..|++-. .|..++-++. .++. +.-|.+..
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n-~W~gLGeAY~-~sGr-----y~~AlKvF 619 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN-LWLGLGEAYP-ESGR-----YSHALKVF 619 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHH-HHHHHHHHHH-hcCc-----eehHHHhh
Confidence 5444444444421 112223444444445555444444444444554422 4443333321 1111 22333344
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 001799 185 KKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGT 222 (1011)
Q Consensus 185 ekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~ 222 (1011)
.|+...+| .+.-..+.-+-+....|+|.+|++.+...
T Consensus 620 ~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 620 TKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44444444 23333333334444455555555555443
No 166
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00067 Score=77.20 Aligned_cols=107 Identities=13% Similarity=-0.014 Sum_probs=92.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 49 LALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMD---------DLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 49 ~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D---------~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
.-.+|..+++.|++..|...|++++..+..+...+.+ ..++.+++.||..+++|.+|+....+++..+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3457889999999999999999988776533222211 2356788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 120 MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 120 ~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
..++++-+++++..++|..|...+.++++..|+|+.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka 326 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKA 326 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHH
Confidence 999999999999999999999999999999999974
No 167
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.52 E-value=0.00016 Score=64.10 Aligned_cols=74 Identities=26% Similarity=0.267 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 43 PNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDST-LMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKY 116 (1011)
Q Consensus 43 P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~-P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~ 116 (1011)
|+-..++...|.++.++|++++|++.+++++++...-+.. |.-..++..+|.+|..+|++++|++.|++|++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4556678889999999999999999999998873321111 1125578899999999999999999999998753
No 168
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.52 E-value=0.00036 Score=80.95 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=61.1
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 41 KYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLT---LSTLQIVFQRLDRLDLATSCYEYACGKY 116 (1011)
Q Consensus 41 k~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~a---l~~Lg~~~~~lg~~~eA~~~YekAlk~~ 116 (1011)
.+|+++.++..+|.+|+.+|++++|++.|++++++ .|++..+ |+++|.+|..+|++++|++.|++|++.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46888999999999999999999999999998876 5777754 9999999999999999999999999873
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=97.52 E-value=0.001 Score=67.60 Aligned_cols=112 Identities=11% Similarity=-0.037 Sum_probs=91.2
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHH
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLS 90 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~ 90 (1011)
..|.-.+-.|+.+..|+++.|...+.-+...+|.++.++.-.|.++..++++++|+..+.-+..+ .+.|+....
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------~~~dp~p~f 109 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL------LKNDYRPVF 109 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccCCCCccc
Confidence 33444556668899999999999999999999999999888888899999999999999877543 456777888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCY 130 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ay 130 (1011)
..|.||..+|+.++|..+|+.++. .|.+.++ ...+..+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l-~~~A~~~ 147 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE-RTEDESL-RAKALVY 147 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH-HHHHHHH
Confidence 999999999999999999999987 6775543 3344443
No 170
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.52 E-value=0.0019 Score=64.30 Aligned_cols=107 Identities=8% Similarity=-0.002 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--
Q 001799 46 PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHM-- 123 (1011)
Q Consensus 46 ~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~-- 123 (1011)
+..++..|....+.|++++|.+.++.+..-- +.+|.-..+...|+.+|...+++++|++.|++-++++|+++.+-
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry---P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY---PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4567888999999999999999988754332 23456667888999999999999999999999999999988744
Q ss_pred -HHHHHHHHHhcC---------------HHHHHHHHHHHHHHcCCcHH
Q 001799 124 -MGLFNCYVREYS---------------FVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 124 -~~Lf~ayvr~~d---------------~~~Aqq~a~kL~K~~P~~ry 155 (1011)
+..+.++.+..+ ...|...+.++.+.+|++.|
T Consensus 87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 455555665554 55566666677777777765
No 171
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.49 E-value=0.00032 Score=77.42 Aligned_cols=103 Identities=15% Similarity=0.024 Sum_probs=91.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
-..+|.+|.|.+|+..|.+.+..+|.|+.+...+|.+|+++.+|..|..-|..|+.+- -....++...+.+-..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999998762 2456778888888899
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001799 99 LDRLDLATSCYEYACGKYHNNMDHMMGLF 127 (1011)
Q Consensus 99 lg~~~eA~~~YekAlk~~P~n~el~~~Lf 127 (1011)
+|...+|-+-||.++.+.|++.++...+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred HhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 99999999999999999999888765544
No 172
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.48 E-value=0.015 Score=74.16 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=125.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHH
Q 001799 82 TLMDDLTLSTLQIVFQRLDRLDLATSCYEYACG-KYHNNMD----HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFL 156 (1011)
Q Consensus 82 ~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk-~~P~n~e----l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~ 156 (1011)
.|+....|..+...+.++++.++|.++.++|++ ++|.-++ +|..+++.-...|.-..-++.+.++-+.. ++|.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 677777887777778888888888888888887 4554332 44444444444454444444444433321 2232
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCC--hHHHH
Q 001799 157 LWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVI--EVDKL 234 (1011)
Q Consensus 157 ~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~--~~~~l 234 (1011)
....+.-+++..... ..+-.+...|++|. . +....|..|+..|.++++-++|-.+|.+++.. +|. ..+..
T Consensus 1532 V~~~L~~iy~k~ek~--~~A~ell~~m~KKF----~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lPk~eHv~~I 1603 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKN--DEADELLRLMLKKF----G-QTRKVWIMYADFLLRQNEAEAARELLKRALKS-LPKQEHVEFI 1603 (1710)
T ss_pred HHHHHHHHHHHhhcc--hhHHHHHHHHHHHh----c-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cchhhhHHHH
Confidence 222222222221111 12233445555542 2 46779999999999999999999999999865 665 45555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Q 001799 235 RMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 278 (1011)
Q Consensus 235 ~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~ 278 (1011)
.--|.+-.+.|+.+.+..+|+.+|...|...+.|.-|++.-++.
T Consensus 1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~ 1647 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKH 1647 (1710)
T ss_pred HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHcc
Confidence 55678889999999999999999999999999999999876654
No 173
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.46 E-value=0.0059 Score=71.20 Aligned_cols=137 Identities=16% Similarity=0.086 Sum_probs=101.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhh----hC----CCC------
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLY----QN----DST------ 82 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~----~d----~~~------ 82 (1011)
.-+++|.+..|.++-++++.++|+++|+.+.|+.+.|.-. ..-..||..+++++++.-. ++ ...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3477899999999999999999999999999988877422 2335677777777654211 00 000
Q ss_pred -CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-cCCcH
Q 001799 83 -LMD----DLTLSTLQIVFQRLDRLDLATSCYEYACGKYHN--NMDHMMGLFNCYVREYSFVKQQQTAIKMYKH-AGEER 154 (1011)
Q Consensus 83 -P~D----~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~--n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~-~P~~r 154 (1011)
..| .-+-..|+.|.+++|+.+||++.|+..++.+|. +..+...+..+++..+.|.++|....+.... -|+..
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSA 330 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSA 330 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchH
Confidence 011 233456899999999999999999999999986 5668889999999999999999876664433 24544
Q ss_pred H
Q 001799 155 F 155 (1011)
Q Consensus 155 y 155 (1011)
.
T Consensus 331 t 331 (539)
T PF04184_consen 331 T 331 (539)
T ss_pred H
Confidence 3
No 174
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.0015 Score=67.80 Aligned_cols=103 Identities=11% Similarity=0.147 Sum_probs=79.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSP-----YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~-----~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+-...|.+|.|..|..-|..+|...|..+ ..+..+|.++.++++.+.|+..|.+++++ .|+...++...
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~kAl~RR 174 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEKALERR 174 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHHHHHHH
Confidence 44567788888888888888888887664 35566777888888888888888888776 67888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGL 126 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~L 126 (1011)
+.+|..+..|++|++-|.+.+..+|.+.++....
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i 208 (271)
T KOG4234|consen 175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAI 208 (271)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 8888888888888888888888888876655433
No 175
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.0016 Score=70.95 Aligned_cols=104 Identities=13% Similarity=-0.034 Sum_probs=91.4
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 001799 49 LALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN---MDHMMG 125 (1011)
Q Consensus 49 ~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n---~el~~~ 125 (1011)
.+--|+-++..|++.+|.+.+...++.-+ .++.-+++++.||.++..+|+|++|...|.++++.+|++ +|.++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP---~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYP---NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 57788889999999999999998765433 345556889999999999999999999999999988865 678999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 126 LFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 126 Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
++.+..+.++-.+|..+..++.+.+|+.+-
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 999999999999999999999999999764
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.45 E-value=0.073 Score=53.10 Aligned_cols=202 Identities=22% Similarity=0.192 Sum_probs=141.4
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhc
Q 001799 59 MGKCDESLSVSLQAKDLLYQNDSTLM--DDLTLSTLQIVFQRLDRLDLATSCYEYACG--KYHNNMDHMMGLFNCYVREY 134 (1011)
Q Consensus 59 lgk~dEAl~l~~~alelL~~d~~~P~--D~~al~~Lg~~~~~lg~~~eA~~~YekAlk--~~P~n~el~~~Lf~ayvr~~ 134 (1011)
.+....+...+...... .+. ........+..+...+++..+...+..+.. ..|.........+..+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALEL------LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhc------CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh
Confidence 46677777777665443 232 467888899999999999999999999987 68888888889999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHcCC
Q 001799 135 SFVKQQQTAIKMYKHAGEERF-LLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHS--LHEPEALIVYISILEQQSK 211 (1011)
Q Consensus 135 d~~~Aqq~a~kL~K~~P~~ry-~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p--~~~~eel~l~~~IL~~qgk 211 (1011)
++..+.....+.....+.+.. ..+.....+. ..+ . +..+...+++++...+ .............+...++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (291)
T COG0457 110 KYEEALELLEKALALDPDPDLAEALLALGALY--ELG-D----YEEALELYEKALELDPELNELAEALLALGALLEALGR 182 (291)
T ss_pred hHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH--HcC-C----HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcC
Confidence 999998888877776666521 1111111122 111 1 2233333333333333 2345566666677888999
Q ss_pred hHHHHHHHHhhhcccCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 212 YGDALEILSGTLGSLLVI-EVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 212 ~eEAL~~L~~~l~~~~~~-~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
+++|+..+...+.. .+. ....+...+..+...+++++|...+..++...|+....+......
T Consensus 183 ~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 245 (291)
T COG0457 183 YEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALL 245 (291)
T ss_pred HHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence 99999999999754 444 355567778899999999999999999999999855555444433
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.40 E-value=0.0078 Score=72.83 Aligned_cols=73 Identities=15% Similarity=0.218 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001799 194 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECF 268 (1011)
Q Consensus 194 ~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~ 268 (1011)
..+.....++.+...+|++++|...+++++.. .+ ....+.++|.++...|++++|.+.|++++.++|.+..++
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL-EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 34566667778888899999999999999853 55 456788899999999999999999999999999987643
No 178
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.37 E-value=0.0013 Score=67.67 Aligned_cols=92 Identities=21% Similarity=0.148 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 28 FKNALKQSTALLAKYPNSPYALALKALVLERMGKC----------DESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 28 ~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~----------dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
|++|.+.++....++|.++.++..-|.+|..+.++ ++|+.-+++++.+ .|+..+++..+|.+|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHH
Confidence 67899999999999999999999999988776333 3444445555443 5888888888888887
Q ss_pred HcCC-----------HHHHHHHHHHHHHhCCCCHHHHHH
Q 001799 98 RLDR-----------LDLATSCYEYACGKYHNNMDHMMG 125 (1011)
Q Consensus 98 ~lg~-----------~~eA~~~YekAlk~~P~n~el~~~ 125 (1011)
..+. |++|..+|++|+..+|+|+-....
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 6554 556777888888888887644333
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.37 E-value=0.0038 Score=69.75 Aligned_cols=192 Identities=13% Similarity=0.147 Sum_probs=121.7
Q ss_pred HcCCHHHHHHHHHHHHHhCC--CCH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 24 DSRQFKNALKQSTALLAKYP--NSP---YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P--~~~---~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
..|+|++|...+.++...+- +++ .-.+..+...++.+++++|+..+++++++.........=..++..+|.+|..
T Consensus 47 ~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 47 LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 46999999999999865532 221 1122334444556699999999999998765432222335578899999999
Q ss_pred c-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc---H----HHHHHHHHHH
Q 001799 99 L-DRLDLATSCYEYACGKYHNN------MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE---R----FLLWAVCSIQ 164 (1011)
Q Consensus 99 l-g~~~eA~~~YekAlk~~P~n------~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~---r----y~~Wai~sl~ 164 (1011)
. |++++|++.|++|+..+-.+ .+....++..+++.++|.+|.+.+.+..+..-++ + .++.....++
T Consensus 127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~ 206 (282)
T PF14938_consen 127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCH 206 (282)
T ss_dssp TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 8 99999999999999865422 1244588899999999999999998887654321 1 1222222222
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH-----cCChHHHHHHHHhh
Q 001799 165 LQVLCGNGGEKLLLLAEGLLKKHVASHS-LHEPEALIVYISILEQ-----QSKYGDALEILSGT 222 (1011)
Q Consensus 165 Lq~~~~~~a~klL~LAek~Lekai~~~p-~~~~eel~l~~~IL~~-----qgk~eEAL~~L~~~ 222 (1011)
| . .++ .-.|.+.+++.....| |.++.+..+...++.. ...+++|+.-+++.
T Consensus 207 L-~-~~D-----~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 207 L-A-MGD-----YVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp H-H-TT------HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred H-H-cCC-----HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 3 1 121 2356677777666654 5666666666555552 23566676666665
No 180
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.35 E-value=0.01 Score=62.51 Aligned_cols=199 Identities=13% Similarity=0.062 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001799 47 YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGL 126 (1011)
Q Consensus 47 ~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~L 126 (1011)
..++-+|..+-.+|-.+-|.--+.+++.+ .|.-+.+.+.||..+..-|+|+.|.+.|...++.+|.+.=+..+-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR 139 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc
Confidence 35566777777777777777777777654 577778888888888888888888888888888888876666666
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHH-HHHHH
Q 001799 127 FNCYVREYSFVKQQQTAIKMYKHAGEERF-LLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEAL-IVYIS 204 (1011)
Q Consensus 127 f~ayvr~~d~~~Aqq~a~kL~K~~P~~ry-~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel-~l~~~ 204 (1011)
+.+..-.|+|.-||+-..+.+...|++|| ..|.-+. -+..++..+. ..+.++.. ..+ .+.| ..+..
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~--E~k~dP~~A~--tnL~qR~~----~~d----~e~WG~~iV~ 207 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN--EQKLDPKQAK--TNLKQRAE----KSD----KEQWGWNIVE 207 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--HhhCCHHHHH--HHHHHHHH----hcc----HhhhhHHHHH
Confidence 66666678888888888888888888885 3342111 1112221111 12333332 111 1111 11112
Q ss_pred HHHHcCChHHHHHHHHhhhcccCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 205 ILEQQSKYGDALEILSGTLGSLLVI----EVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 205 IL~~qgk~eEAL~~L~~~l~~~~~~----~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
.+..+=.-+.+.+.+...-.. ... -.+.++..|..+...|+.++|...|+-++..|--|
T Consensus 208 ~yLgkiS~e~l~~~~~a~a~~-n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 208 FYLGKISEETLMERLKADATD-NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHHhhccHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 221111112233333222100 100 12345667888888899999999999888876444
No 181
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.035 Score=60.87 Aligned_cols=249 Identities=15% Similarity=0.089 Sum_probs=149.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
-.-||..|...+|..|++.+.--....|.+-..+.+.|+++++..++.+|.+.+.+.-.+ .|.......-.+..
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL------HPELEQYRLYQAQS 87 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ChHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999999999999999999999875433 45544444444555
Q ss_pred HHHcCCHHHHHHHH----------------HHHHH--------------hCC--CCHHHHHHHHHHHHHhcCHHHHHHHH
Q 001799 96 FQRLDRLDLATSCY----------------EYACG--------------KYH--NNMDHMMGLFNCYVREYSFVKQQQTA 143 (1011)
Q Consensus 96 ~~~lg~~~eA~~~Y----------------ekAlk--------------~~P--~n~el~~~Lf~ayvr~~d~~~Aqq~a 143 (1011)
+...+.+.+|+.+. +.|++ .-| +..+.....+-...+.|+++.|.+-+
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 55566666655432 22222 223 12223334444455667777776665
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCC---------------CCC---------HHHH
Q 001799 144 IKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHS---------------LHE---------PEAL 199 (1011)
Q Consensus 144 ~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p---------------~~~---------~eel 199 (1011)
........-++-..+++....++.. ....+++.....+++-+...| +.| .+++
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~---qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSR---QYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhh---hHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 5555554444432333333333222 112233333334443333222 111 3567
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhccc-CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 200 IVYISILEQQSKYGDALEILSGTLGSL-LVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 200 ~l~~~IL~~qgk~eEAL~~L~~~l~~~-~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
.+..-|..+.++++.|.+.+-...... ...+|--+..+| +.-..+++.+..+-++=+|.+||=-.+.+-+++-.
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A-l~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA-LMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH-HhcccCCccccHHHHHHHHhcCCCChHHHHHHHHH
Confidence 777888899999999888776542210 011222232222 22235778888888888999998666666555433
No 182
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.27 E-value=0.00051 Score=54.40 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFN 128 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ 128 (1011)
.++..++.+|...|++++|+++|+++++.+|+|.+++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 678899999999999999999999999999999999887764
No 183
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.23 E-value=0.22 Score=59.88 Aligned_cols=230 Identities=13% Similarity=0.166 Sum_probs=141.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 37 ALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMD-DLTLSTLQIVFQRLDRLDLATSCYEYACGK 115 (1011)
Q Consensus 37 klLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D-~~al~~Lg~~~~~lg~~~eA~~~YekAlk~ 115 (1011)
-+|+++|++..-+.-+ +-...|+..+-+..+.+|+.-+... ..|+- ...|..++.+|...|+.+.|..+|++|++.
T Consensus 340 VlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~-ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPK-KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcc-cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 3466677776554433 3445677888888888876533211 12322 356889999999999999999999999996
Q ss_pred C-CCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH------------------HHHHHHHHHHHHHhcCCcH
Q 001799 116 Y-HNN---MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER------------------FLLWAVCSIQLQVLCGNGG 173 (1011)
Q Consensus 116 ~-P~n---~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r------------------y~~Wai~sl~Lq~~~~~~a 173 (1011)
. |.- .+++..|+..-++..+++.|.+...... .-|.++ -..|+..+-+..+..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g---- 491 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG---- 491 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc----
Confidence 4 443 3466788888899999988766433222 223321 123444333332211
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-CCChHHHHHHH-HHHHHH--cCCHHH
Q 001799 174 EKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSL-LVIEVDKLRMQ-GRLLAR--QGDYTA 249 (1011)
Q Consensus 174 ~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~-~~~~~~~l~l~-a~ll~k--lg~~ee 249 (1011)
.+.......++.+... +-+++.+..|+..|+.+.-++++.+++++.+... .|.--++|... .....+ --+.+.
T Consensus 492 --tfestk~vYdriidLr-iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 492 --TFESTKAVYDRIIDLR-IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred --cHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 1222333333444433 3689999999999999999999999999986421 23333433221 111122 237799
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 250 AAQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 250 A~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
|.++++++|+..|-...-...++-+.++
T Consensus 569 aRdLFEqaL~~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 569 ARDLFEQALDGCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999887443333323333343
No 184
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.20 E-value=0.022 Score=60.09 Aligned_cols=183 Identities=12% Similarity=0.064 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 001799 26 RQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLA 105 (1011)
Q Consensus 26 gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA 105 (1011)
|-+.-|.--+++.|..+|+.+.+....|.-+...|+++.|.+.++.++++ .|+..-+..+.|..+.--|||.-|
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------Dp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------CCcchHHHhccceeeeecCchHhh
Confidence 45566777789999999999999999999999999999999999998876 689999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 001799 106 TSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER-FLLWAVCSIQLQVLCGNGGEKLLLLAEGLL 184 (1011)
Q Consensus 106 ~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r-y~~Wai~sl~Lq~~~~~~a~klL~LAek~L 184 (1011)
..-+.+-.+.+|+++ ....|.-.--+.-|.++|+....+ +....++ +.=|.+...++-..+ .+.+...+...
T Consensus 153 q~d~~~fYQ~D~~DP-fR~LWLYl~E~k~dP~~A~tnL~q--R~~~~d~e~WG~~iV~~yLgkiS---~e~l~~~~~a~- 225 (297)
T COG4785 153 QDDLLAFYQDDPNDP-FRSLWLYLNEQKLDPKQAKTNLKQ--RAEKSDKEQWGWNIVEFYLGKIS---EETLMERLKAD- 225 (297)
T ss_pred HHHHHHHHhcCCCCh-HHHHHHHHHHhhCCHHHHHHHHHH--HHHhccHhhhhHHHHHHHHhhcc---HHHHHHHHHhh-
Confidence 999999999999987 566676666677788888775332 2223333 334566666662221 11111111111
Q ss_pred HHHHhcCC-C--CCHHHHHHHHHHHHHcCChHHHHHHHHhhhc
Q 001799 185 KKHVASHS-L--HEPEALIVYISILEQQSKYGDALEILSGTLG 224 (1011)
Q Consensus 185 ekai~~~p-~--~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~ 224 (1011)
...+. + .-.|..+.++.-+..+|..++|..++.-++.
T Consensus 226 ---a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 226 ---ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 01000 0 1235667778999999999999999988864
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.15 E-value=0.0027 Score=73.84 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=76.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
++..++-.+|++.+.+.++.+|++...+.+.|..+.+.++++.|+.++++++++ .|.+-.+|..|+.+|..+|+
T Consensus 210 ~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 210 YLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCC
Confidence 356788899999999999999999999999999999999999999999999876 79999999999999999999
Q ss_pred HHHHHHHHH
Q 001799 102 LDLATSCYE 110 (1011)
Q Consensus 102 ~~eA~~~Ye 110 (1011)
+++|+....
T Consensus 284 ~e~ALlaLN 292 (395)
T PF09295_consen 284 FENALLALN 292 (395)
T ss_pred HHHHHHHHh
Confidence 999996553
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.11 E-value=0.002 Score=74.88 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=65.0
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001799 81 STLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDH---MMGLFNCYVREYSFVKQQQTAIKMYKH 149 (1011)
Q Consensus 81 ~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el---~~~Lf~ayvr~~d~~~Aqq~a~kL~K~ 149 (1011)
..|+++.++..+|.+|..+|+|++|+..|++|++.+|++.++ +++++.+|...|++.+|...+.+..+.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999999865 899999999999999999998888876
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.09 E-value=0.018 Score=59.33 Aligned_cols=120 Identities=14% Similarity=0.017 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001799 27 QFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLAT 106 (1011)
Q Consensus 27 n~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~ 106 (1011)
+...+++.+.+-+..-|... -.+..|.++..+|++.||...+.+++.- ..-.|+..+.-++..+...+++.+|.
T Consensus 71 dP~R~~Rea~~~~~~ApTvq-nr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 71 DPERHLREATEELAIAPTVQ-NRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred ChhHHHHHHHHHHhhchhHH-HHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 44455555555555555443 2344555666666666666666665332 23345555555666666666666666
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC
Q 001799 107 SCYEYACGKYHN--NMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE 152 (1011)
Q Consensus 107 ~~YekAlk~~P~--n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~ 152 (1011)
.++++..+.+|. .++-...++..+...|.+..|...+..+..-.|+
T Consensus 145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 666666665553 2334445556666666666666655555555554
No 188
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.01 E-value=0.00092 Score=77.42 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
.+.-+++..+.|..|+.+|.|+++++||+..+...++.++.+.+.+.+|+.-+.++++. .|+...++..-|.+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAV 82 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHH
Confidence 56677899999999999999999999999999999999999999999999999998775 588999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNC 129 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~a 129 (1011)
..++++.+|...|+...+..|++..+...+-.+
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 999999999999999999999999877655544
No 189
>PRK11906 transcriptional regulator; Provisional
Probab=97.01 E-value=0.0049 Score=71.86 Aligned_cols=101 Identities=15% Similarity=0.033 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDL 104 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~e 104 (1011)
...-.+|++++++++..+|+++.++...|.++...|+++.|...++++..+ .|+.+.+++..|++..-.|+.++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHH
Confidence 345567899999999999999999999999999999999999999999876 79999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHH--HHHHHHHH
Q 001799 105 ATSCYEYACGKYHNNMDHM--MGLFNCYV 131 (1011)
Q Consensus 105 A~~~YekAlk~~P~n~el~--~~Lf~ayv 131 (1011)
|.+..++|++.+|....+. ..|...|.
T Consensus 391 a~~~i~~alrLsP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 391 ARICIDKSLQLEPRRRKAVVIKECVDMYV 419 (458)
T ss_pred HHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence 9999999999999865432 23443554
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.96 E-value=0.0061 Score=68.07 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHC-CChHHHHHHHHHHHHhhhhCCCCCCcHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNS------PYALALKALVLERM-GKCDESLSVSLQAKDLLYQNDSTLMDDLT 88 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~------~~a~aLKA~aL~rl-gk~dEAl~l~~~alelL~~d~~~P~D~~a 88 (1011)
+...-..+..+++++|+..+++++..+-.. ...+...|.++... |++++|++.+++|+++...+.....-..+
T Consensus 78 ~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 78 YEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 455667778889999999999998764322 12445566677777 99999999999999976644322223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----H---HHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYACGKYHNN----M---DHMMGLFNCYVREYSFVKQQQTAIKMYKHAG 151 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n----~---el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P 151 (1011)
+..++.++..+|+|++|++.|+++.+..-++ . +.....+.+++..||+..|++...+.....|
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7788999999999999999999998754322 1 2344566789999999999998887776666
No 191
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.013 Score=64.49 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=99.2
Q ss_pred hHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHH-
Q 001799 12 PERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLS- 90 (1011)
Q Consensus 12 ~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~- 90 (1011)
.|..+.+..+++..|++..|...++.++...|++..+....+.++...|+.++|..++.. ++.+ -.+.....
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~---~~~~~~~~l 206 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQ---AQDKAAHGL 206 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Cccc---chhhHHHHH
Confidence 455677777899999999999999999999999999999999999999999999998875 3211 11112221
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHc
Q 001799 91 -TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHA 150 (1011)
Q Consensus 91 -~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~ 150 (1011)
.--.++.......+.. -+++.+..+|+|.++.+.++..|...|+.+.|......+++.+
T Consensus 207 ~a~i~ll~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 207 QAQIELLEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1112333333333332 3677788999999999999999999999999988766666553
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.84 E-value=0.92 Score=51.93 Aligned_cols=228 Identities=10% Similarity=-0.005 Sum_probs=130.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH-Hc
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ-RL 99 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~-~l 99 (1011)
++-..|.+..|.++++.+-.+-|..+-+.----......|+.+.|+.+++...+.....+..-....+-.+-+.... -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 44456777777777777777777765443333333455678888887777654322110000011111111111111 12
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 001799 100 DRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLL 179 (1011)
Q Consensus 100 g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~L 179 (1011)
-++..|...-..++|+.|+-.-...--..++.+.|+..++.++...+-|.+|.... | .+|.....++.+..-+.-
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a---~lY~~ar~gdta~dRlkR 317 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A---LLYVRARSGDTALDRLKR 317 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H---HHHHHhcCCCcHHHHHHH
Confidence 24556666667777888877666667777788888888888877777777776532 2 223223333333222333
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 001799 180 AEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQ-GDYTAAAQIYKKIL 258 (1011)
Q Consensus 180 Aek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~kl-g~~eeA~~~~~kaL 258 (1011)
+.++ ...+| ++.+..+..++.-..-|+|..|..--+..... .|. ...+.+++++-... |+-.++....-+++
T Consensus 318 a~~L----~slk~-nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~-~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 318 AKKL----ESLKP-NNAESSLAVAEAALDAGEFSAARAKAEAAARE-APR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHH----HhcCc-cchHHHHHHHHHHHhccchHHHHHHHHHHhhh-Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 3332 23455 67777777777777778887776665555321 222 22344556666554 88888888777777
Q ss_pred Hh
Q 001799 259 EL 260 (1011)
Q Consensus 259 ~~ 260 (1011)
.-
T Consensus 391 ~A 392 (531)
T COG3898 391 KA 392 (531)
T ss_pred cC
Confidence 64
No 193
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.098 Score=56.98 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=82.4
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH---
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR--- 98 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~--- 98 (1011)
++..|+|+.|++...+ -.+.++.++...|+.++.+++-|...+++..+ -.|+.++..|+..+..
T Consensus 118 ~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--------ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 118 YMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQ--------IDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------cchHHHHHHHHHHHHHHhc
Confidence 4667777777665444 45567777777777787777777777666533 2455566656554432
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 99 -LDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 99 -lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
-+++.+|.-+|+....+.|-++.+..+.+.+++..++|.+|+.....++...++.+.
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpe 242 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPE 242 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHH
Confidence 345667777778777777777777777777788888888887777766666666654
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.67 E-value=0.04 Score=53.68 Aligned_cols=90 Identities=20% Similarity=0.110 Sum_probs=74.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCC---cHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNS---PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLM---DDLTLSTL 92 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~---~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~---D~~al~~L 92 (1011)
..-.-..|+..+|+..|++++...+.. ..++.-.|.++..+|++++|+.++++++.. .|. +......+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~------~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE------FPDDELNAALRVFL 81 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCccccHHHHHHH
Confidence 333445799999999999999986655 457788899999999999999999988653 344 67777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 001799 93 QIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk 114 (1011)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999877765
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.65 E-value=0.0048 Score=48.82 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 001799 232 DKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYL 272 (1011)
Q Consensus 232 ~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl 272 (1011)
+.+..+|..|..+|++++|.+.|+++++.+|||..+|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34677899999999999999999999999999999998664
No 196
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.56 E-value=0.13 Score=55.98 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH---HH-HH
Q 001799 86 DLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN---MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER---FL-LW 158 (1011)
Q Consensus 86 ~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n---~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r---y~-~W 158 (1011)
+..|+.-|..-...|++++|...|++....+|.+ +.+...++.++.+.+++..|...+.+..+.+|.++ |. +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 5678888888889999999999999999999975 45777888999999999999999999999999865 31 12
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHH---HHhhhcccCCChHHHHH
Q 001799 159 AVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEI---LSGTLGSLLVIEVDKLR 235 (1011)
Q Consensus 159 ai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~---L~~~l~~~~~~~~~~l~ 235 (1011)
.+++.+.+....+........|...+++.++.=| +++-. .+|..- +...++. .-.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryP--nS~Ya-------------~dA~~~i~~~~d~LA~-------~Em 171 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYP--NSRYA-------------PDAKARIVKLNDALAG-------HEM 171 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCC--CCcch-------------hhHHHHHHHHHHHHHH-------HHH
Confidence 3333333322222222333344444444444443 21100 122222 2222211 112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001799 236 MQGRLLARQGDYTAAAQIYKKILELSPDDWECFL 269 (1011)
Q Consensus 236 l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~ 269 (1011)
..|+.|.+.|.|..|...++.+++.-|+-.....
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~e 205 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVRE 205 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHH
Confidence 3578999999999999999999998777544443
No 197
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.41 E-value=0.0074 Score=44.30 Aligned_cols=33 Identities=21% Similarity=0.138 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
.++..+|.++..+|++++|+..|+++++.+|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 678899999999999999999999999999986
No 198
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.37 E-value=0.006 Score=45.07 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
.+|..+|.+|..+|++++|+..|++|++.+|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 678999999999999999999999999999974
No 199
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.30 E-value=2.4 Score=47.33 Aligned_cols=233 Identities=16% Similarity=0.124 Sum_probs=135.6
Q ss_pred HHHcCCHHHHHHHHHHHHHh----CCCCHH----HHHHHHHHHHHCC-ChHHHHHHHHHHHHhhhh----CCCCCC----
Q 001799 22 AIDSRQFKNALKQSTALLAK----YPNSPY----ALALKALVLERMG-KCDESLSVSLQAKDLLYQ----NDSTLM---- 84 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk----~P~~~~----a~aLKA~aL~rlg-k~dEAl~l~~~alelL~~----d~~~P~---- 84 (1011)
+..+||++.|..++.|+=.. .|+... ..+.-|.-+...+ ++++|...++++.+++.. +...|.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 56889999999999987433 344332 2233455556678 999999999999887532 112221
Q ss_pred cHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcC--CcHHHHHH
Q 001799 85 DDLTLSTLQIVFQRLDRLD---LATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAG--EERFLLWA 159 (1011)
Q Consensus 85 D~~al~~Lg~~~~~lg~~~---eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P--~~ry~~Wa 159 (1011)
...++..++.+|...+.++ +|..+.+.+-..+|+.+++..--+....+.++.....+..++|....+ +..+ -.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~--~~ 160 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF--DS 160 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH--HH
Confidence 1245677888998888766 455566667778898888776666777778999999999999998765 3332 22
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCC--------hHHHHHHHHh---hhcccC
Q 001799 160 VCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHE-PEALIVYISILEQQSK--------YGDALEILSG---TLGSLL 227 (1011)
Q Consensus 160 i~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~-~eel~l~~~IL~~qgk--------~eEAL~~L~~---~l~~~~ 227 (1011)
++..+-+... .....+......++..... +..+ .-+..+...++..++. .+...++++. ..+..+
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~--~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~l 237 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFK--SSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQL 237 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCC
Confidence 3333321111 1111222222233322222 2122 2333344444444331 2223233331 122112
Q ss_pred CChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 228 VIEV-----DKLRMQGRLLARQGDYTAAAQIYKKILE 259 (1011)
Q Consensus 228 ~~~~-----~~l~l~a~ll~klg~~eeA~~~~~kaL~ 259 (1011)
.... ..+...|.-..+.++|++|.+.|+-+|.
T Consensus 238 s~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 238 SAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 2221 2345567888999999999999997763
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.28 E-value=0.085 Score=59.00 Aligned_cols=121 Identities=8% Similarity=-0.067 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001799 28 FKNALKQSTALLAKYPNSPYALALKALVLERMG-KCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLAT 106 (1011)
Q Consensus 28 ~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlg-k~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~ 106 (1011)
.+.|-+.+.++++..+-+...+..-|.+.++.+ +.+-|..+++.+++. .|.+...|..+...+...++.+.|.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~------f~~~~~~~~~Y~~~l~~~~d~~~aR 90 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK------FPSDPDFWLEYLDFLIKLNDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH------HTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhCcHHHHH
Confidence 778888999998665555667777777777754 444499999998765 5788999999999999999999999
Q ss_pred HHHHHHHHhCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 107 SCYEYACGKYHNNM---DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 107 ~~YekAlk~~P~n~---el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
.+|++++..-|... .++..|...-.+.|+.....+...++...+|+..
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999877654 4777888888889999998888888888888854
No 201
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.19 Score=52.55 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCHH---HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRLD---LATSCYEYACGKYH-NNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQ 166 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~---eA~~~YekAlk~~P-~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq 166 (1011)
..||-|....+.+ +|...|+++++.-. +.+ +....+.++...+|.+.|-..+.+.+.-.
T Consensus 36 lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-----------------~~~~~~ekf~~~n~~t~Ya~laaL~lAk~ 98 (207)
T COG2976 36 LFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-----------------KSIAAAEKFVQANGKTIYAVLAALELAKA 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------------hhHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 4556566655555 67778888877432 211 11223345555566666633333332211
Q ss_pred HhcCCcHHHHHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHc
Q 001799 167 VLCGNGGEKLLLLAEGLLKKHVASHSLHEPE--ALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQ 244 (1011)
Q Consensus 167 ~~~~~~a~klL~LAek~Lekai~~~p~~~~e--el~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~kl 244 (1011)
..+. .-++-|+..++.......-++-. .-+.+++|+..+|++++|++.|+...+. .-..-.-.++|+++...
T Consensus 99 ~ve~----~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~w~~~~~elrGDill~k 172 (207)
T COG2976 99 EVEA----NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--SWAAIVAELRGDILLAK 172 (207)
T ss_pred HHhh----ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--cHHHHHHHHhhhHHHHc
Confidence 1111 12455666665444311101111 3346689999999999999999998542 22333456789999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 001799 245 GDYTAAAQIYKKILELSPDDW 265 (1011)
Q Consensus 245 g~~eeA~~~~~kaL~~nPDdw 265 (1011)
|+-++|...|+++++.++++.
T Consensus 173 g~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 173 GDKQEARAAYEKALESDASPA 193 (207)
T ss_pred CchHHHHHHHHHHHHccCChH
Confidence 999999999999999976543
No 202
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.013 Score=62.46 Aligned_cols=99 Identities=11% Similarity=-0.008 Sum_probs=87.6
Q ss_pred CchHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 10 GIPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 10 ~v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
..+++.-.+-..++-...|..|+..|.+++.++|+.+-++..+|+++.++++++.+..-|+.++++ .|+-...+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk~h 81 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVKAH 81 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHHHH
Confidence 344444445556777889999999999999999999999999999999999999999999999886 68889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAlk 114 (1011)
+.+|.++...+.|++|++.+++|..
T Consensus 82 ~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 82 YFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999999954
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.23 E-value=0.14 Score=59.13 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=83.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---CCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 21 DAIDSRQFKNALKQSTALLAK----YPNSPYALALKALVLER---MGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk----~P~~~~a~aLKA~aL~r---lgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
.+=+..+|+.-+++++.+-+. .++.+....+.|.++.| .|+.++|+.++.+++.. ..+.+++++-++|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-----~~~~~~d~~gL~G 224 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-----DENPDPDTLGLLG 224 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-----cCCCChHHHHHHH
Confidence 444678999999999998666 66778889999999999 99999999999886332 2567889999999
Q ss_pred HHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 001799 94 IVFQR---------LDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYS 135 (1011)
Q Consensus 94 ~~~~~---------lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d 135 (1011)
.+|.. ....++|+..|.++...+|+-. ...+++......|.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCC
Confidence 99865 2245689999999999998643 23345544444443
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.18 E-value=0.053 Score=55.99 Aligned_cols=68 Identities=19% Similarity=0.083 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001799 62 CDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL----------DLATSCYEYACGKYHNNMDHMMGLFNCYV 131 (1011)
Q Consensus 62 ~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~----------~eA~~~YekAlk~~P~n~el~~~Lf~ayv 131 (1011)
++.|.+.++..... .|.|.+.|..-|.++.++.++ ++|+.-|+.|++++|+..+++..|+++|.
T Consensus 7 FE~ark~aea~y~~------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 7 FEHARKKAEAAYAK------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45666666654332 699999999999988776433 46777788999999999999999999987
Q ss_pred HhcC
Q 001799 132 REYS 135 (1011)
Q Consensus 132 r~~d 135 (1011)
..+.
T Consensus 81 s~A~ 84 (186)
T PF06552_consen 81 SLAF 84 (186)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 205
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.13 E-value=0.14 Score=50.91 Aligned_cols=119 Identities=11% Similarity=-0.081 Sum_probs=81.9
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHH
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLS 90 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~ 90 (1011)
.|+..++..-.+...|+...++..+.+++..+......-.-- ..=.......+... -..++.
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------------~~~~~~ 66 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------------YLDALE 66 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------------HHHHHH
Confidence 456666777777888899999999999998876543211000 00111122222221 135677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
.++..+...|++++|+..+++++..+|-|+.++..+..+|.+.|+...|.+.+.++.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 788889999999999999999999999999999999999999999999988766554
No 206
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.96 Score=50.81 Aligned_cols=174 Identities=11% Similarity=0.005 Sum_probs=113.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-cCCcH-HHHHHHHHHHHHHhcC
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKH-AGEER-FLLWAVCSIQLQVLCG 170 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~-~P~~r-y~~Wai~sl~Lq~~~~ 170 (1011)
+-++-..|++.+|...|++.++.+|.+.=++..-=.+|.-.|+-........+++-. +|+-| |.+...|-.+-...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-- 187 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-- 187 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH--
Confidence 345556789999999999999999997544443335566667666555555555533 56665 33332222221111
Q ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh---HHHHHHHHHHHHHcCCH
Q 001799 171 NGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE---VDKLRMQGRLLARQGDY 247 (1011)
Q Consensus 171 ~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~---~~~l~l~a~ll~klg~~ 247 (1011)
-..+..|++..+++.+.+++ +.=+....+.|++-.|++.|+.+++...-....... ..-+..-|.++..-+.|
T Consensus 188 ---~g~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 188 ---CGIYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred ---hccchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 12477889999999998884 445777889999999999999999987632211111 11133356677778999
Q ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHH
Q 001799 248 TAAAQIYKKILE--LSPDDWECFLHYL 272 (1011)
Q Consensus 248 eeA~~~~~kaL~--~nPDdw~~~~~yl 272 (1011)
+.|.++|..-+- .+.+|..+..-|+
T Consensus 264 e~aleIyD~ei~k~l~k~Da~a~~~~l 290 (491)
T KOG2610|consen 264 EKALEIYDREIWKRLEKDDAVARDVYL 290 (491)
T ss_pred hHHHHHHHHHHHHHhhccchhhhhhhh
Confidence 999999977653 4556654443333
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.06 E-value=0.099 Score=51.21 Aligned_cols=91 Identities=21% Similarity=0.169 Sum_probs=43.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL 102 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~ 102 (1011)
-+.|+.+.|+..+.+.|-.-|..+-++..+|.++.-.|+.++|++-+++++++-. ...-+--.++...|.+|+..|+-
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHhCch
Confidence 3445555555555555555555555555555555555555555555555544311 00111112233444455555555
Q ss_pred HHHHHHHHHHHHh
Q 001799 103 DLATSCYEYACGK 115 (1011)
Q Consensus 103 ~eA~~~YekAlk~ 115 (1011)
+.|..-|+.|.+.
T Consensus 132 d~AR~DFe~AA~L 144 (175)
T KOG4555|consen 132 DAARADFEAAAQL 144 (175)
T ss_pred HHHHHhHHHHHHh
Confidence 5555555554443
No 208
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.00 E-value=0.95 Score=56.66 Aligned_cols=239 Identities=16% Similarity=0.031 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPN--S-------PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDD 86 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~--~-------~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~ 86 (1011)
+-.+|....+++|.+|-.+++++...-|. + ..+.+++|.+....|++++|.++++.++..++.+ ..-...
T Consensus 419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~-~~~~r~ 497 (894)
T COG2909 419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA-AYRSRI 497 (894)
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc-cchhhh
Confidence 56788889999999999999887655443 2 3578999999999999999999999998887654 234567
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHH--HHHHHHhcCHHHHH--HHHHHHH----HHcCCcH
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN----MDHMMGL--FNCYVREYSFVKQQ--QTAIKMY----KHAGEER 154 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n----~el~~~L--f~ayvr~~d~~~Aq--q~a~kL~----K~~P~~r 154 (1011)
.++.++|.+..-.|++++|..+-..+-+..-.. .+++..+ ...+...|+.+.++ ....... +..|...
T Consensus 498 ~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~ 577 (894)
T COG2909 498 VALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHE 577 (894)
T ss_pred hhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 788899999999999999999887776653322 2222222 23344555222221 1111111 1223322
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-CC-ChHH
Q 001799 155 FLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSL-LV-IEVD 232 (1011)
Q Consensus 155 y~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~-~~-~~~~ 232 (1011)
|.+.....++.-..+....+.-..++.+.... ....++...-.+++++++....|++++|...++...... .+ ..+.
T Consensus 578 f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 578 FLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 32221111111000000000001111111100 011221222234578899999999999999988763211 11 1121
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 233 ----KLRMQGRLLARQGDYTAAAQIYKK 256 (1011)
Q Consensus 233 ----~l~l~a~ll~klg~~eeA~~~~~k 256 (1011)
....+..+....|+++++.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 122233445567888888776555
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.99 E-value=0.013 Score=51.83 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001799 86 DLTLSTLQIVFQRLDRLDLATSCYEYACGK---YH-NNMD---HMMGLFNCYVREYSFVKQQQTAIKMYKH 149 (1011)
Q Consensus 86 ~~al~~Lg~~~~~lg~~~eA~~~YekAlk~---~P-~n~e---l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~ 149 (1011)
..++..+|.+|...|++++|++.|++|++. .+ ++++ .+..++.+|...|++++|.+...+.++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467889999999999999999999999974 33 2222 4568999999999999999887776654
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.98 E-value=0.0071 Score=45.33 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=25.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 001799 108 CYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQ 140 (1011)
Q Consensus 108 ~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aq 140 (1011)
+|++|++.+|+|.+++..++.+|...|++++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367777888888777778888877777777764
No 211
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.97 E-value=0.22 Score=57.01 Aligned_cols=205 Identities=17% Similarity=0.105 Sum_probs=115.3
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHHhCC
Q 001799 51 LKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL-------------DLATSCYEYACGKYH 117 (1011)
Q Consensus 51 LKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~-------------~eA~~~YekAlk~~P 117 (1011)
..|.++--+|.|+||+..|.+-+++-..=..-.....+++.+|.+|-..|+. +++...+++|++-+-
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 3456666678888888888776553221001234567888888888776542 356677788887777
Q ss_pred CCHHHHH-------------HHHHHHHHhcCHHHHHHHH---HHHHHHcCCcH-----HHHHHHHHHHHHHhcCCcHHHH
Q 001799 118 NNMDHMM-------------GLFNCYVREYSFVKQQQTA---IKMYKHAGEER-----FLLWAVCSIQLQVLCGNGGEKL 176 (1011)
Q Consensus 118 ~n~el~~-------------~Lf~ayvr~~d~~~Aqq~a---~kL~K~~P~~r-----y~~Wai~sl~Lq~~~~~~a~kl 176 (1011)
.|.++.. .|+..|.-.|||..|...- ..+.+.|.+.. +.....+-+++ . .-+.+...
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl-g-~fe~A~eh 257 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL-G-NFELAIEH 257 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh-c-ccHhHHHH
Confidence 6666554 3445566667787764322 22334444321 11111111111 0 00011111
Q ss_pred HHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--CCC---hHHHHHHHHHHHHHcCCHHHH
Q 001799 177 LLLAEGLLKKHVASHS-LHEPEALIVYISILEQQSKYGDALEILSGTLGSL--LVI---EVDKLRMQGRLLARQGDYTAA 250 (1011)
Q Consensus 177 L~LAek~Lekai~~~p-~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~--~~~---~~~~l~l~a~ll~klg~~eeA 250 (1011)
++++ +.-+++... -...+.-+-++..|.....+++|+.+..+.+... +.+ +....+-+|..+-.+|..++|
T Consensus 258 YK~t---l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 258 YKLT---LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHH---HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 1111 111222222 0224455667788888889999999999876421 122 223455678889999999999
Q ss_pred HHHHHHHHHh
Q 001799 251 AQIYKKILEL 260 (1011)
Q Consensus 251 ~~~~~kaL~~ 260 (1011)
..+....++.
T Consensus 335 l~fae~hl~~ 344 (639)
T KOG1130|consen 335 LYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHH
Confidence 9888888764
No 212
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.85 E-value=0.7 Score=52.78 Aligned_cols=85 Identities=14% Similarity=-0.012 Sum_probs=65.5
Q ss_pred CCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001799 82 TLMDDLTLSTLQIVFQRLDR------------LDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKH 149 (1011)
Q Consensus 82 ~P~D~~al~~Lg~~~~~lg~------------~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~ 149 (1011)
.|.|..+|..+....-.+-. .+.-+.+|++|++.+|+++.++..+...+.+.++-++..+.-.++.+.
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46666666666554433322 345677899999999999999999999999999999988888899999
Q ss_pred cCCcHHHHHHHHHHHHHH
Q 001799 150 AGEERFLLWAVCSIQLQV 167 (1011)
Q Consensus 150 ~P~~ry~~Wai~sl~Lq~ 167 (1011)
+|++.. .|.....+.|.
T Consensus 95 ~~~~~~-LW~~yL~~~q~ 111 (321)
T PF08424_consen 95 NPGSPE-LWREYLDFRQS 111 (321)
T ss_pred CCCChH-HHHHHHHHHHH
Confidence 998865 78766666654
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.82 E-value=1 Score=52.13 Aligned_cols=181 Identities=15% Similarity=0.052 Sum_probs=115.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHH-HHHHcCCcHH
Q 001799 84 MDDLTLSTLQIVFQRLDRLDLATSCYEYACGK----YHNNMDHMMGLFNCYVR---EYSFVKQQQTAIK-MYKHAGEERF 155 (1011)
Q Consensus 84 ~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~----~P~n~el~~~Lf~ayvr---~~d~~~Aqq~a~k-L~K~~P~~ry 155 (1011)
-+++++..+-..|+...+|+..+++.+..-.. .++...+..+++.+..| .||.++|.+.... +.+..+.++.
T Consensus 139 ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d 218 (374)
T PF13281_consen 139 LSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPD 218 (374)
T ss_pred cChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH
Confidence 34456667778899999999999999887665 56677788899999999 9999999999888 4444455554
Q ss_pred HHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHH----HHH---Hhhhcc
Q 001799 156 LLWAVCSIQLQV---LCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDAL----EIL---SGTLGS 225 (1011)
Q Consensus 156 ~~Wai~sl~Lq~---~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL----~~L---~~~l~~ 225 (1011)
.+.+++-++-- .........+..|.....|+.+.++ +.-.-..++.++...|...+.- ++. ...++.
T Consensus 219 -~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 219 -TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred -HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc--cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 34444443310 1111223447777777777777665 2223345555566666432222 221 122222
Q ss_pred c--CCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 226 L--LVIEVDKL--RMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 267 (1011)
Q Consensus 226 ~--~~~~~~~l--~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~ 267 (1011)
. .....+.| --.+.+..-.|++++|...+++++..+|..|..
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 1 11222222 223455666899999999999999999999963
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.80 E-value=0.023 Score=41.68 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 232 DKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 232 ~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
..++.+|.++.+.|++++|.+.|+++++.+|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457888999999999999999999999999986
No 215
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.60 E-value=0.09 Score=54.93 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=44.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSP----YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~----~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
...+.|++++|+......+.. |.+. .+....|.+++++|++|+|+..++...+ ..-....-.+.|.+|
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-------~~w~~~~~elrGDil 169 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-------ESWAAIVAELRGDIL 169 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-------ccHHHHHHHHhhhHH
Confidence 445556666666555555543 3332 1233445555555666666555543210 011122234455566
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 001799 97 QRLDRLDLATSCYEYACGKYHN 118 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~ 118 (1011)
...|+-++|.+.|++|+..+++
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHcCchHHHHHHHHHHHHccCC
Confidence 6666666666666666655543
No 216
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.54 E-value=0.024 Score=41.79 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 232 DKLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 232 ~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
..++.+|.++..+|++++|+..|+++|+.+|+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 457889999999999999999999999999985
No 217
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.14 Score=55.14 Aligned_cols=107 Identities=9% Similarity=-0.053 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhh--CCCCCCcHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 47 YALALKALVLERMGKCDESLSVSLQAKDLLYQ--NDSTLMDDL----------TLSTLQIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 47 ~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~--d~~~P~D~~----------al~~Lg~~~~~lg~~~eA~~~YekAlk 114 (1011)
.++.-+|.=+++.|++.||...|..|+..+.. -+..|.+++ .+.++..|+...|+|-++++.....++
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 35667888899999999999999988765431 012455554 345677889999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc
Q 001799 115 KYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE 153 (1011)
Q Consensus 115 ~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ 153 (1011)
.+|+|..+++.-+.+....++..+|+.-+.+++...|.-
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 999999999999999999999999999888888888764
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.48 E-value=0.015 Score=43.54 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 001799 35 STALLAKYPNSPYALALKALVLERMGKCDESL 66 (1011)
Q Consensus 35 ~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl 66 (1011)
++|+++.+|+++.++...|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666666777777777777776667666664
No 219
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.92 Score=50.47 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHH-HHHHH
Q 001799 85 DDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLW-AVCSI 163 (1011)
Q Consensus 85 D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~W-ai~sl 163 (1011)
..+.-..-+.-....|++.+|...|..++...|++.++...++.+|+..|+.+.|+.....+-....+.++.-. +-+.+
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 33444445556778999999999999999999999999999999999999999988764433222222332110 11223
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Q 001799 164 QLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGS 225 (1011)
Q Consensus 164 ~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~ 225 (1011)
+.|+...++.. .+++....+| .+.+.-+.++..+...|++++|++.|=..+..
T Consensus 213 l~qaa~~~~~~--------~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 213 LEQAAATPEIQ--------DLQRRLAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHhcCCCHH--------HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333322211 1222234577 78999999999999999999999998777643
No 220
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.41 E-value=0.62 Score=52.14 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q 001799 88 TLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVR-EYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQ 166 (1011)
Q Consensus 88 al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr-~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq 166 (1011)
+|..+..+.++.+..+.|..+|++|.+..+-+.+++..++..-.. .+|.+.|.+++...+|.+|.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----------- 71 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----------- 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH-----------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH-----------
Confidence 455566666666667777777777765555556666665555333 44454466665555555555543
Q ss_pred HhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChH---HHHHHHHHHHHH
Q 001799 167 VLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEV---DKLRMQGRLLAR 243 (1011)
Q Consensus 167 ~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~---~~l~l~a~ll~k 243 (1011)
.+..|+..+...|+.+.|..++++.+.. ++.+. ..|.....+-.+
T Consensus 72 -------------------------------~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~ 119 (280)
T PF05843_consen 72 -------------------------------FWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESK 119 (280)
T ss_dssp -------------------------------HHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHH
Confidence 3444444445556666677777777654 44332 234444456667
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHH
Q 001799 244 QGDYTAAAQIYKKILELSPDDWECF 268 (1011)
Q Consensus 244 lg~~eeA~~~~~kaL~~nPDdw~~~ 268 (1011)
-|+.+.+..+++++.+..|++-...
T Consensus 120 ~Gdl~~v~~v~~R~~~~~~~~~~~~ 144 (280)
T PF05843_consen 120 YGDLESVRKVEKRAEELFPEDNSLE 144 (280)
T ss_dssp HS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred cCCHHHHHHHHHHHHHHhhhhhHHH
Confidence 7999999999999999888855443
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.40 E-value=0.27 Score=55.54 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhccc--CCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 198 ALIVYISILEQQSKYGDALEILSGTLGSL--LVIEV---DKLRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 198 el~l~~~IL~~qgk~eEAL~~L~~~l~~~--~~~~~---~~l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
.++.++-.|..+|...+|.+..+.+.+.. ..+.+ .-+...|++|...|+.+.|+.-|+.+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 45566677778888888888888774211 12322 22445689999999999999999988764
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.28 E-value=0.18 Score=60.49 Aligned_cols=111 Identities=13% Similarity=0.065 Sum_probs=74.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLD 103 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~ 103 (1011)
...+.+.|.+..+..++++|+....+..+|.++...|+.++|++.++++++. .... ..-....+.-+++++.-+++++
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~-q~~~-~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIES-QSEW-KQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccc-hhhH-HhHHHHHHHHHHHHHHHHchHH
Confidence 3567778888888888888888888888888888888888888888876431 1000 1122345556777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcCH
Q 001799 104 LATSCYEYACGKYHNNMDHM-MGLFNCYVREYSF 136 (1011)
Q Consensus 104 eA~~~YekAlk~~P~n~el~-~~Lf~ayvr~~d~ 136 (1011)
+|...|.+.++.+.-...++ +..+.++...++.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 77777777776555433222 2444555555555
No 223
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.26 E-value=0.041 Score=61.32 Aligned_cols=51 Identities=18% Similarity=0.295 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQ 141 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq 141 (1011)
--|.-|...|+|++|+.+|.+++..+|-|+-...+-+++|++...|..|..
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666666555555555555555555555543
No 224
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=2.5 Score=49.69 Aligned_cols=223 Identities=12% Similarity=0.033 Sum_probs=131.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHH-------HHHCCChHHHHHHHHHHHHhhhhCCCCCC-----
Q 001799 24 DSRQFKNALKQSTALLAKYPN-------SPYALALKALV-------LERMGKCDESLSVSLQAKDLLYQNDSTLM----- 84 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~-------~~~a~aLKA~a-------L~rlgk~dEAl~l~~~alelL~~d~~~P~----- 84 (1011)
-.|=|++|.+..|+++++-.+ .+.....|-.. -.-.|++.+|++.+....+.-. ..|+
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~---r~p~~~Llr 363 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCT---RFPTPLLLR 363 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---hCCchHHHH
Confidence 568899999999999887322 23333333332 2336999999987766655322 2343
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH----
Q 001799 85 --DDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHM----MGLFNCYVREYSFVKQQQTAIKMYKHAGEER---- 154 (1011)
Q Consensus 85 --D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~----~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r---- 154 (1011)
.+..+..+|..-...+.|+.|...|..|+++--. .+++ ..++..|++.++-..--++ +....|.+.
T Consensus 364 ~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-~dl~a~~nlnlAi~YL~~~~~ed~y~~---ld~i~p~nt~s~s 439 (629)
T KOG2300|consen 364 AHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-IDLQAFCNLNLAISYLRIGDAEDLYKA---LDLIGPLNTNSLS 439 (629)
T ss_pred HhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-HHHHHHHHHhHHHHHHHhccHHHHHHH---HHhcCCCCCCcch
Confidence 4456667888888899999999999999987554 3332 3778899998876654443 344455421
Q ss_pred -------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh--cc
Q 001799 155 -------FLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL--GS 225 (1011)
Q Consensus 155 -------y~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l--~~ 225 (1011)
.+|-.++-.+.| ++-++++..+....+|- ++..... -+...+.+++.|....|+..|+.+.+...+ .+
T Consensus 440 sq~l~a~~~~v~glfaf~q-n~lnEaK~~l~e~Lkma-naed~~r-L~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 440 SQRLEASILYVYGLFAFKQ-NDLNEAKRFLRETLKMA-NAEDLNR-LTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhc-chhhHHH-HHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 111111112222 11122222222222221 1111111 234578888999999999999999887763 33
Q ss_pred cCCChHHHH---HHHHHHHHHcCC--HHHHHHHHHH
Q 001799 226 LLVIEVDKL---RMQGRLLARQGD--YTAAAQIYKK 256 (1011)
Q Consensus 226 ~~~~~~~~l---~l~a~ll~klg~--~eeA~~~~~k 256 (1011)
++|+-+..+ -+.-.++...|+ -+.+.+.+++
T Consensus 517 Ki~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 517 KIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred cCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 466654332 233466777776 5555555544
No 225
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.05 E-value=0.011 Score=66.08 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=84.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
+..+++.+|.+..|+..+..+++++|.+...++.|+.++..+++...|+.-|..++++ .|..+.-+-.-|..-+
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc------CcccccccchhhHHHH
Confidence 5568999999999999999999999999999999999999999999999999988764 4555556777888999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 001799 98 RLDRLDLATSCYEYACGKYHN 118 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~ 118 (1011)
.+|.+++|.+.++.|++.+-+
T Consensus 194 llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HhhchHHHHHHHHHHHhcccc
Confidence 999999999999999998765
No 226
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.02 E-value=0.15 Score=59.33 Aligned_cols=141 Identities=14% Similarity=0.089 Sum_probs=111.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhh--CCCCCC--cHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQ--NDSTLM--DDLTLSTLQI 94 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~--d~~~P~--D~~al~~Lg~ 94 (1011)
+--++...|.|.|.+....+.-.--+.+.++++|+...+-.|++..|.+++... .+-.. .++.|. .-..|++||-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcce
Confidence 334588899999999999998888899999999999999999999999887532 11000 001111 2335789999
Q ss_pred HHHHcCCHHHHHHHHHHHHH---------hCC---------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHH
Q 001799 95 VFQRLDRLDLATSCYEYACG---------KYH---------NNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFL 156 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk---------~~P---------~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~ 156 (1011)
++..++.|.-+..+|.+|++ ..| +..++.++++..|+..|+...|-+.+.+..+.|-.+|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr- 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR- 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH-
Confidence 99999999999999999996 112 45679999999999999999999999999999988876
Q ss_pred HHHHH
Q 001799 157 LWAVC 161 (1011)
Q Consensus 157 ~Wai~ 161 (1011)
.|..+
T Consensus 371 lWLRl 375 (696)
T KOG2471|consen 371 LWLRL 375 (696)
T ss_pred HHHHH
Confidence 67443
No 227
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.95 E-value=0.047 Score=40.12 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
.+|..+|.+|..+|++++|.+.|+++++.+|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578899999999999999999999999999954
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.94 E-value=5 Score=48.32 Aligned_cols=133 Identities=13% Similarity=0.012 Sum_probs=92.7
Q ss_pred hHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HCCChHHHHHHHHHHHHhhhhCCC
Q 001799 15 RVRPIWDAID-SRQFKNALKQSTALLAKYPNSPYALALKALVLE------------RMGKCDESLSVSLQAKDLLYQNDS 81 (1011)
Q Consensus 15 rl~~I~dald-~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~------------rlgk~dEAl~l~~~alelL~~d~~ 81 (1011)
++..|.+.+- .||=+.++++..+..+ .++-.-..+..++.-+ .....++|.+++..... .
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~------~ 262 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK------R 262 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH------h
Confidence 3444444443 5888899999998877 4544333333222211 12345566666665533 3
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 82 TLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMD----HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 82 ~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~e----l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
.|+-.-.+..-|.+++..|+.++|++.|++++.....-.+ ....++.+++-..+|++|...+.+|.+.+.-.+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHH
Confidence 7888888889999999999999999999998853333222 234777889999999999999999998776555
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.25 Score=55.20 Aligned_cols=113 Identities=10% Similarity=-0.065 Sum_probs=46.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhh-CCCCCCcHHHHHHHHHHHHHcCCH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQ-NDSTLMDDLTLSTLQIVFQRLDRL 102 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~-d~~~P~D~~al~~Lg~~~~~lg~~ 102 (1011)
.+|++.+|-..-+|+|+.+|.+..+.-.--.+++.+|+.+.-...++++ +++ +...|-..-+.-.++..+.+.|-|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kI---ip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKI---IPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHh---ccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3444444444444555555544444433334444444444444444333 111 111122222233344444444445
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 001799 103 DLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQ 139 (1011)
Q Consensus 103 ~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~A 139 (1011)
++|.+.=.+|++++|.+--+....+-..-..++++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg 228 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEG 228 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhH
Confidence 5544444444444444433333333333334444443
No 230
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=2.1 Score=46.15 Aligned_cols=183 Identities=10% Similarity=0.062 Sum_probs=108.3
Q ss_pred cCCHHHHHHHHHHH----HHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHc
Q 001799 25 SRQFKNALKQSTAL----LAKYPNS-PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRL 99 (1011)
Q Consensus 25 ~gn~KqAL~l~dkl----LKk~P~~-~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~l 99 (1011)
.+||.+|=..+-++ +|.+.++ ...-+..|.=.++.+++++|...+++++++...-.....-..-+..+|.+|...
T Consensus 47 aK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd 126 (288)
T KOG1586|consen 47 AKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD 126 (288)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh
Confidence 35666664444333 4444333 223344555556777999999999998885431111111122334677777664
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC-
Q 001799 100 -DRLDLATSCYEYACGKYHNNMD------HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGN- 171 (1011)
Q Consensus 100 -g~~~eA~~~YekAlk~~P~n~e------l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~- 171 (1011)
.++++|+..||.|-.-+.+.+. -....++.....++|.+|..++.++.+..-+++-.-|.+-..++++.--.
T Consensus 127 l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 127 LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 8999999999999887766432 22244555667788888888888888877777755666655555321000
Q ss_pred cHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHH
Q 001799 172 GGEKLLLLAEGLLKKHVASHS-LHEPEALIVYISILEQ 208 (1011)
Q Consensus 172 ~a~klL~LAek~Lekai~~~p-~~~~eel~l~~~IL~~ 208 (1011)
.... .--+.+.+++..+..| |.+..|.-++-.++..
T Consensus 207 ~~~D-~v~a~~ALeky~~~dP~F~dsREckflk~L~~a 243 (288)
T KOG1586|consen 207 CKAD-EVNAQRALEKYQELDPAFTDSRECKFLKDLLDA 243 (288)
T ss_pred hccc-HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 0000 1134566677777777 4555566555555543
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=3.8 Score=44.51 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=80.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH-H---HHHHHH--HHHHHCCChHHHHHHHHHHHHhhhhCCCCC-CcHHHHHHHHHHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSP-Y---ALALKA--LVLERMGKCDESLSVSLQAKDLLYQNDSTL-MDDLTLSTLQIVF 96 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~-~---a~aLKA--~aL~rlgk~dEAl~l~~~alelL~~d~~~P-~D~~al~~Lg~~~ 96 (1011)
..++|++|-..+.|+.+-+.++- . +++... ..+-.+.++.|+..+++++..+-... ..| +-..++..-+.+
T Consensus 43 nAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~-GspdtAAmaleKAak~- 120 (308)
T KOG1585|consen 43 NAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC-GSPDTAAMALEKAAKA- 120 (308)
T ss_pred hhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCcchHHHHHHHHHHH-
Confidence 45889999999999998877763 2 333322 23345789999999999987753322 233 112223333333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNN------MDHMMGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n------~el~~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
.+..++++|+.+|++++..--++ .+++..+...+++...|.+|...+.+..
T Consensus 121 lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 34567999999999998754432 2455577788899889988877766654
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.67 E-value=0.65 Score=45.69 Aligned_cols=94 Identities=15% Similarity=-0.047 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HH
Q 001799 48 ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMD----HM 123 (1011)
Q Consensus 48 a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~e----l~ 123 (1011)
.+-++|.++...|+.++|++.+.+++.+ .|..+.++++.+..++-.|+.++|+.-+.+|+....+... .+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL------APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4567899999999999999999999887 5788999999999999999999999999999997544322 23
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 124 MGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 124 ~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
.+-+..|...|+-.+|..-+....
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAA 142 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHH
Confidence 355666777777777765544433
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.63 E-value=1.6 Score=47.63 Aligned_cols=133 Identities=11% Similarity=0.029 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC-----cHHHHHHHH
Q 001799 88 TLSTLQIVFQRLDRLDLATSCYEYACGKY-HNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE-----ERFLLWAVC 161 (1011)
Q Consensus 88 al~~Lg~~~~~lg~~~eA~~~YekAlk~~-P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~-----~ry~~Wai~ 161 (1011)
+.+.+..++.++|.|.-...+|.+.++.+ |.++.+...++...++.||.+.|...+...-|.... +.......+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33456667888889988899999999988 567778889999999999999998888766654432 111111111
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCC
Q 001799 162 SIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLV 228 (1011)
Q Consensus 162 sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~ 228 (1011)
+.++.. . +-+..|.+...+.+..++ .++.+....+-++...|+..+|++.+++.+.. .|
T Consensus 259 a~i~lg-~-----nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~-~P 317 (366)
T KOG2796|consen 259 AFLHLG-Q-----NNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ-DP 317 (366)
T ss_pred hhheec-c-----cchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc-CC
Confidence 111100 0 113445555556666676 78888888888888899999999999988754 44
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.55 E-value=0.057 Score=39.13 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
+++..+|.++...|++++|...|+++++.+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367789999999999999999999999999974
No 235
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.52 E-value=0.41 Score=50.24 Aligned_cols=124 Identities=14% Similarity=0.077 Sum_probs=95.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH--HHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL--TLSTLQIV 95 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~--al~~Lg~~ 95 (1011)
.+-.-++..+-.+++.-++++ |+ .|.-++..|.+++|..-|..|+++.+. .|+... .+...+-+
T Consensus 78 e~E~i~~deek~k~~~kad~l-K~----------EGN~~F~ngdyeeA~skY~~Ale~cp~---~~~e~rsIly~Nraaa 143 (271)
T KOG4234|consen 78 EIEKIFSDEEKDKAIEKADSL-KK----------EGNELFKNGDYEEANSKYQEALESCPS---TSTEERSILYSNRAAA 143 (271)
T ss_pred HHHHhcCcHHHHHHHHHHHHH-HH----------HHHHhhhcccHHHHHHHHHHHHHhCcc---ccHHHHHHHHhhhHHH
Confidence 333334444555556555554 22 355678899999999999999887542 333333 34466778
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
+..++..+.|+.-..+|+.++|.+..++.+-+.+|-....|..|..-+.+++...|..+.
T Consensus 144 ~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 144 LIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 999999999999999999999999999999999999999999999999999999998774
No 236
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.46 E-value=16 Score=44.66 Aligned_cols=426 Identities=12% Similarity=0.095 Sum_probs=229.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhh-hCCCCCCcHHHHHHHHHHHHHcCCHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLY-QNDSTLMDDLTLSTLQIVFQRLDRLD 103 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~-~d~~~P~D~~al~~Lg~~~~~lg~~~ 103 (1011)
.|-..-+++.+.+-||..|.... ---..|...++.+||.+.+..++.--. ..+..+++...|..+.......-+.-
T Consensus 151 ~~lPets~rvyrRYLk~~P~~~e---eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 151 HGLPETSIRVYRRYLKVAPEARE---EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred CCChHHHHHHHHHHHhcCHHHHH---HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 45667899999999999997632 222346678999999988877532100 11245677777877777665433222
Q ss_pred ---HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH-----HHHHH-----HHHHHHH-Hh
Q 001799 104 ---LATSCYEYACGKYHNNM-DHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER-----FLLWA-----VCSIQLQ-VL 168 (1011)
Q Consensus 104 ---eA~~~YekAlk~~P~n~-el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r-----y~~Wa-----i~sl~Lq-~~ 168 (1011)
..-+..+..+..+|+-. -++..|+.-|+|.|.|++|...+.......-.-+ |-+.+ ..+..++ +.
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~ 307 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELAD 307 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 12345677778888743 3667899999999999999988877665433221 11111 1111122 11
Q ss_pred --cCCcH-H-H---HHHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCC----C
Q 001799 169 --CGNGG-E-K---LLLLAEGLLKKH--------VASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLV----I 229 (1011)
Q Consensus 169 --~~~~a-~-k---lL~LAek~Leka--------i~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~----~ 229 (1011)
.++.. + + .++..+.++++- +..+| .+.+++.....+++ |+..+-...+..++....| .
T Consensus 308 ~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~-~nV~eW~kRV~l~e--~~~~~~i~tyteAv~~vdP~ka~G 384 (835)
T KOG2047|consen 308 EESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP-HNVEEWHKRVKLYE--GNAAEQINTYTEAVKTVDPKKAVG 384 (835)
T ss_pred hcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC-ccHHHHHhhhhhhc--CChHHHHHHHHHHHHccCcccCCC
Confidence 01110 0 1 122223332211 22355 77888877666654 5666666666666543233 2
Q ss_pred hH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHhccCccccccCCCCCCCCCCcccccccCc
Q 001799 230 EV-DKLRMQGRLLARQGDYTAAAQIYKKILELS----PDDWECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHL 304 (1011)
Q Consensus 230 ~~-~~l~l~a~ll~klg~~eeA~~~~~kaL~~n----PDdw~~~~~yl~all~~~~~w~~~~~~~~~~p~~~~~~~~~~l 304 (1011)
.+ ..|...|.+|...|+.+.|..++.+++..+ .|-+.+|..+.+.=+.
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr--------------------------- 437 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR--------------------------- 437 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh---------------------------
Confidence 23 346667899999999999999999999864 2336667655533221
Q ss_pred chHhhhhcHHHHHHHHHHHHhccCCCCchhhHhhchh----HHHHHhhhCCCCchHHHHHHHHHHHHcCCccccHHhHHH
Q 001799 305 TDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLE----IERRKLLYGKNNNDELMEAVLEYFLSFGHLACFTSDVED 380 (1011)
Q Consensus 305 ~~e~~~~~i~ea~~fi~~l~~~~~~~~~Rgp~LA~LE----L~~r~~~~G~~d~~~l~~~l~~Y~~kfg~K~cCf~DLk~ 380 (1011)
+...+.|..+++.-.. .+++|.|...+ ...|++. ...+=....+|-+.+|.--+|
T Consensus 438 -----h~~~~~Al~lm~~A~~-----vP~~~~~~~yd~~~pvQ~rlhr-----SlkiWs~y~DleEs~gtfest------ 496 (835)
T KOG2047|consen 438 -----HENFEAALKLMRRATH-----VPTNPELEYYDNSEPVQARLHR-----SLKIWSMYADLEESLGTFEST------ 496 (835)
T ss_pred -----hhhHHHHHHHHHhhhc-----CCCchhhhhhcCCCcHHHHHHH-----hHHHHHHHHHHHHHhccHHHH------
Confidence 2235567776654322 34444422111 1111110 012234444555555522222
Q ss_pred HHhcCCHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhCCCCCCCCcc
Q 001799 381 FLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCKSLPLSKDLDPQ 460 (1011)
Q Consensus 381 Yl~~L~~e~~~~~l~~l~~~~~~~~~~~~k~l~~~I~~~Kl~r~lg~~~~~~~~~~~~~~~~l~~~Y~~~l~l~~dl~~t 460 (1011)
+...+++..- .. +.|. .-||. .-++..+ .-..+..+.|.++.++-+-+...
T Consensus 497 ----------k~vYdriidL-ri--aTPq----ii~Ny---AmfLEeh---------~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 497 ----------KAVYDRIIDL-RI--ATPQ----IIINY---AMFLEEH---------KYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred ----------HHHHHHHHHH-hc--CCHH----HHHHH---HHHHHhh---------HHHHHHHHHHHcCCccCCCccHH
Confidence 2333333210 00 0011 11221 1222211 13566778899998886532222
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhHhhcCCCch--hHHHHHHHHHHHcCChHHHHHHHHhc--chh
Q 001799 461 ESIHGEELLSMASNVLVQLFWRTSNYGYFMEAIMVLEFGLTVRRHAW--QYKVLLVHLYSHLGALPLAYEWYKAL--DVK 536 (1011)
Q Consensus 461 E~qp~Del~LLAa~~Ll~l~~~~~~~~~L~~Ai~LLE~~L~~SP~n~--~lkLlLvrLY~~LGa~s~A~~~y~~L--dvK 536 (1011)
| ++-.. |...-.+-+ ...+.+|=-|.|.+|..=|-.+ .+.|+-+.+=-..|....|+.+|+.. .||
T Consensus 548 d--------iW~tY-Ltkfi~ryg-g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~ 617 (835)
T KOG2047|consen 548 D--------IWNTY-LTKFIKRYG-GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVK 617 (835)
T ss_pred H--------HHHHH-HHHHHHHhc-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 2 22111 111111112 2346788888999998777322 34555556666679999999999874 455
Q ss_pred hhhhhhh
Q 001799 537 NILMETV 543 (1011)
Q Consensus 537 ~IQ~DTL 543 (1011)
--|.-.|
T Consensus 618 ~a~~l~m 624 (835)
T KOG2047|consen 618 EAQRLDM 624 (835)
T ss_pred HHHHHHH
Confidence 5554444
No 237
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.29 E-value=0.78 Score=52.67 Aligned_cols=222 Identities=14% Similarity=0.053 Sum_probs=134.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHHh--hhhCCCCCCcHHHHHHHHH
Q 001799 21 DAIDSRQFKNALKQSTALLAKYPNSP----YALALKALVLERMGKCDESLSVSLQAKDL--LYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P~~~----~a~aLKA~aL~rlgk~dEAl~l~~~alel--L~~d~~~P~D~~al~~Lg~ 94 (1011)
.....|++.+.+.++++++...-++. ..+...|.+++-++++++|+++-..-+.+ +-.| .-....+--.||.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd--klGEAKssgNLGN 103 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD--KLGEAKSSGNLGN 103 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc--hhccccccccccc
Confidence 45678999999999999999876663 35567788888889999999864332111 1111 1234445557999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHH----------------HHHHHHHHHHHHcCC
Q 001799 95 VFQRLDRLDLATSCYEYACGKYH------NNMDHMMGLFNCYVREYSFV----------------KQQQTAIKMYKHAGE 152 (1011)
Q Consensus 95 ~~~~lg~~~eA~~~YekAlk~~P------~n~el~~~Lf~ayvr~~d~~----------------~Aqq~a~kL~K~~P~ 152 (1011)
++.-+|.|++|+.+.++-+...- ....++++++..|...|.-- .|.+.|.+.+..+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN-- 181 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN-- 181 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH--
Confidence 99999999999998766544221 11237788999998877532 1222222221110
Q ss_pred cHHHHHHHHHHH--H-----HHhc----CC------c-------HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 001799 153 ERFLLWAVCSIQ--L-----QVLC----GN------G-------GEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQ 208 (1011)
Q Consensus 153 ~ry~~Wai~sl~--L-----q~~~----~~------~-------a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~ 208 (1011)
+.+. + |... ++ + .+.-+.+|...=+++.+.. +.-.++..+.-
T Consensus 182 --------L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRR------A~sNlgN~hif 247 (639)
T KOG1130|consen 182 --------LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERR------AHSNLGNCHIF 247 (639)
T ss_pred --------HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHH------hhcccchhhhh
Confidence 0000 0 0000 00 0 0112334444433333322 34456677778
Q ss_pred cCChHHHHHHHHhhhcc--cCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 209 QSKYGDALEILSGTLGS--LLVI---EVDKLRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 209 qgk~eEAL~~L~~~l~~--~~~~---~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
.|+++.|.+.+...+.. .+.+ +....|-+|..|.-+.+++.|+.+..+-|.+
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999876421 1222 2334667788888888999999999888765
No 238
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.01 E-value=0.097 Score=38.41 Aligned_cols=32 Identities=34% Similarity=0.656 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 233 KLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 233 ~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
.++.+|.++..+|++++|...++++++.+|||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57788999999999999999999999999964
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.54 Score=51.20 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQF-KNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 17 ~~I~dald~gn~-KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
++|..-++.|+- ..-+.+-+|.+.. .....+.++.-+|.+.-....+.++++. ..|.++.....||.+
T Consensus 153 ~~ii~~~e~~~~~ESsv~lW~KRl~~------Vmy~~~~~llG~kEy~iS~d~~~~vi~~-----~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 153 SKILANLEQGLAEESSIRLWRKRLGR------VMYSMANCLLGMKEYVLSVDAYHSVIKY-----YPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHH------HHHHHHHHHhcchhhhhhHHHHHHHHHh-----CCcccHHHHHHHHHH
Confidence 344444444444 3334444444332 2333333444444444444555444331 134455555555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 96 FQRLDRLDLATSCYEYACGKYH------NNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P------~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
....|+.+.|..+|++.-|... ++.-...+-...|+-.+||..|.....+....+|.++
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 5555555555555553322111 1112223344444444555555554444444444444
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.77 E-value=0.11 Score=39.26 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCC
Q 001799 88 TLSTLQIVFQRLDRLDLATSCYEYAC--GKYHNN 119 (1011)
Q Consensus 88 al~~Lg~~~~~lg~~~eA~~~YekAl--k~~P~n 119 (1011)
+|..||.+|...|++++|+++|++++ ..+|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 47789999999999999999999954 455543
No 241
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.53 E-value=8.5 Score=48.00 Aligned_cols=213 Identities=15% Similarity=0.120 Sum_probs=124.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-------HhhhhCC-------CCCCcHHHH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAK-------DLLYQND-------STLMDDLTL 89 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~al-------elL~~d~-------~~P~D~~al 89 (1011)
..|.|.+|++.++.-=+.+-.+.++ .+|--|...++.+.|+++|+++- .++..++ ..-.|+..|
T Consensus 838 s~g~w~eA~eiAE~~DRiHLr~Tyy--~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKDRIHLRNTYY--NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred hcccHHHHHHHHhhccceehhhhHH--HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHH
Confidence 3688888888887765555555443 34444556777888888887631 1111110 113566777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH---------------------HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYAC---------------------GKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYK 148 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAl---------------------k~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K 148 (1011)
.--|..+...|+.+.|+..|..|- ....+|..+.++++..|-..|++.+|...+.+...
T Consensus 916 ~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 916 SWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 788889999999999999998762 23446677888999999999999888765544331
Q ss_pred ------HcCCc--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHH-----
Q 001799 149 ------HAGEE--RFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDA----- 215 (1011)
Q Consensus 149 ------~~P~~--ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEA----- 215 (1011)
+-.+| ....|+++.+.- +. + +-.|.+..+ ..+-.-..++ ++|.+.|.+.+|
T Consensus 996 fsnAIRlcKEnd~~d~L~nlal~s~----~~--d--~v~aArYyE----e~g~~~~~AV----mLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 996 FSNAIRLCKENDMKDRLANLALMSG----GS--D--LVSAARYYE----ELGGYAHKAV----MLYHKAGMIGKALELAF 1059 (1416)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhcC----ch--h--HHHHHHHHH----HcchhhhHHH----HHHHhhcchHHHHHHHH
Confidence 11111 123454433211 11 1 111122221 1121111222 233444444444
Q ss_pred -------HHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 216 -------LEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 256 (1011)
Q Consensus 216 -------L~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~k 256 (1011)
++++.+.+. ...++..+..-++.+....+|+.|..++-.
T Consensus 1060 ~tqQf~aL~lIa~DLd--~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLD--AGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred hhcccHHHHHHHHhcC--CCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 444444442 245677777778899999999998876543
No 242
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.43 E-value=17 Score=41.21 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCC-C-----------------------
Q 001799 177 LLLAEGLLKKHVASHSL---HEPEALIVYISILEQQSKYGDALEILSGTLGSLLV-I----------------------- 229 (1011)
Q Consensus 177 L~LAek~Lekai~~~p~---~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~-~----------------------- 229 (1011)
+..|...+.++....+. ..+...+.+++++..+|+..+|+..++..+..... .
T Consensus 162 ~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (352)
T PF02259_consen 162 FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISST 241 (352)
T ss_pred cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccccccccc
Confidence 56777777766553311 14667788999999999999999999776541000 0
Q ss_pred --h-------HHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 001799 230 --E-------VDKLRMQGRLLARQ------GDYTAAAQIYKKILELSPDDWECFLHYLGCLL 276 (1011)
Q Consensus 230 --~-------~~~l~l~a~ll~kl------g~~eeA~~~~~kaL~~nPDdw~~~~~yl~all 276 (1011)
. ...+..+|...... +..+++...|+++++.+|.....|..+.....
T Consensus 242 ~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 242 NLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 0 12244455556666 88899999999999999999888887765543
No 243
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=16 Score=40.37 Aligned_cols=248 Identities=10% Similarity=0.035 Sum_probs=155.0
Q ss_pred hhHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhhhhCCCCCCcHH
Q 001799 14 RRVRPIWDAID-----SRQFKNALKQSTALLAKYPNSPYALALKALVLERMG-KCDESLSVSLQAKDLLYQNDSTLMDDL 87 (1011)
Q Consensus 14 Rrl~~I~dald-----~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlg-k~dEAl~l~~~alelL~~d~~~P~D~~ 87 (1011)
-.++++++++. +..-..|+++.+.++..+|-+-..+..+-.++-.++ +..+-++.+.++++- .|++-.
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~------npKNYQ 113 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED------NPKNYQ 113 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh------Cccchh
Confidence 34666666653 566778999999999999999888888888877764 566777777776542 789999
Q ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-
Q 001799 88 TLSTLQIVFQRLDRLD-LATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQL- 165 (1011)
Q Consensus 88 al~~Lg~~~~~lg~~~-eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~L- 165 (1011)
+|+-.-.+...+|++. .-++.-+.++..+.+|.-++.+---+...-++|..-.+.+..|++..-.|-- .|+---.++
T Consensus 114 vWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNS-AWN~Ryfvi~ 192 (318)
T KOG0530|consen 114 VWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNS-AWNQRYFVIT 192 (318)
T ss_pred HHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccc-hhheeeEEEE
Confidence 9999999999999887 6777888999999998887764433444446688878888888866432110 221100000
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cC--ChHHHHHHHHhhhcccCCChHHHHHHHHHHH-
Q 001799 166 QVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQ-QS--KYGDALEILSGTLGSLLVIEVDKLRMQGRLL- 241 (1011)
Q Consensus 166 q~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~-qg--k~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll- 241 (1011)
+. .+-.....+..-.....+.+...| .|..++.++.-++.. .| .+.+...++.....+.....+..+-...++|
T Consensus 193 ~~-~~~~~~~~le~El~yt~~~I~~vP-~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~ 270 (318)
T KOG0530|consen 193 NT-KGVISKAELERELNYTKDKILLVP-NNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYA 270 (318)
T ss_pred ec-cCCccHHHHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHH
Confidence 00 111111122222233334456677 788899988888886 44 3566666666553221112333332233333
Q ss_pred -----HHcCCHH---HHHHHHHHHH-HhCCCCHHHHHH
Q 001799 242 -----ARQGDYT---AAAQIYKKIL-ELSPDDWECFLH 270 (1011)
Q Consensus 242 -----~klg~~e---eA~~~~~kaL-~~nPDdw~~~~~ 270 (1011)
.+.+.-+ +|..+|+.+- +.+|=...+|..
T Consensus 271 e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~ 308 (318)
T KOG0530|consen 271 EDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRH 308 (318)
T ss_pred HHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 2233334 5777787766 667766666653
No 244
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.16 E-value=0.26 Score=57.41 Aligned_cols=127 Identities=16% Similarity=0.072 Sum_probs=96.3
Q ss_pred CCCchHhhHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC---C-----HHHHHHHHHHHHHCCChHHHHHHHHHHHH----
Q 001799 8 AGGIPERRVRPIWDAIDSRQFKNALKQSTAL-LAKYPN---S-----PYALALKALVLERMGKCDESLSVSLQAKD---- 74 (1011)
Q Consensus 8 ~~~v~eRrl~~I~dald~gn~KqAL~l~dkl-LKk~P~---~-----~~a~aLKA~aL~rlgk~dEAl~l~~~ale---- 74 (1011)
+++-.+-.+-.-+-.+-.|||.+|.++.... +.+.|. . -.++...|+|.+++|.+.-+..++.+|+.
T Consensus 236 a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 236 AQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred cCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 3444444555556678889999999887764 555565 2 12456789999999999999999998863
Q ss_pred hhhhC--------CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 001799 75 LLYQN--------DSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREY 134 (1011)
Q Consensus 75 lL~~d--------~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~ 134 (1011)
.+..+ ......-+.+++.|..|...|++-.|..+|.+|++.+-.|+-+|.+++.+++...
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL 383 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 11111 0122456788999999999999999999999999999999999999999987644
No 245
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.05 E-value=3.7 Score=50.98 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhhh------------ccc--------CCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 195 EPEALIVYISILEQQSKYGDALEILSGTL------------GSL--------LVIEVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 195 ~~eel~l~~~IL~~qgk~eEAL~~L~~~l------------~~~--------~~~~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
++.-+--.++.++.+|+.+.|+.++..+- |.. ...+....|.+|+.|...|+..+|...|
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34455566778888888888888777541 100 0122345788899999999999999998
Q ss_pred HHHHH
Q 001799 255 KKILE 259 (1011)
Q Consensus 255 ~kaL~ 259 (1011)
.++-.
T Consensus 991 TrAqa 995 (1416)
T KOG3617|consen 991 TRAQA 995 (1416)
T ss_pred HHHHH
Confidence 87644
No 246
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=92.95 E-value=0.56 Score=46.61 Aligned_cols=57 Identities=23% Similarity=0.147 Sum_probs=33.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 51 LKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYAC 113 (1011)
Q Consensus 51 LKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAl 113 (1011)
..+..+...|++++|+..++.++.. .|.|..++..+-.+|...|++.+|...|++..
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344455666666666666666554 46666666666666666666666666665553
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.59 E-value=25 Score=40.87 Aligned_cols=247 Identities=17% Similarity=0.023 Sum_probs=151.3
Q ss_pred HhhHHHHHHHHHc-------CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC
Q 001799 13 ERRVRPIWDAIDS-------RQFKNALKQSTALLAKYP--NSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL 83 (1011)
Q Consensus 13 eRrl~~I~dald~-------gn~KqAL~l~dklLKk~P--~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P 83 (1011)
+||-..-|+++.. |+-..|-+...+.-+.-- ..+..+.+.+.+-.--|++++|..-|+.-+
T Consensus 78 ~rKRdrgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl---------- 147 (531)
T COG3898 78 ERKRDRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAML---------- 147 (531)
T ss_pred HHHhhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHh----------
Confidence 4555567777764 566677777666543322 335677888888888999999999887532
Q ss_pred CcHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--H-HcCCcHHH
Q 001799 84 MDDLT----LSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMY--K-HAGEERFL 156 (1011)
Q Consensus 84 ~D~~a----l~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~--K-~~P~~ry~ 156 (1011)
.|+++ +.-|..--+..|.++.|..+-++|..+-|.-+-+.........+.|||..|.+....-. + ..++...-
T Consensus 148 ~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR 227 (531)
T COG3898 148 DDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAER 227 (531)
T ss_pred cChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHH
Confidence 23343 22333344678999999999999999999988888888899999999998866533222 1 12221110
Q ss_pred HHHHHHH--HHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHH
Q 001799 157 LWAVCSI--QLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKL 234 (1011)
Q Consensus 157 ~Wai~sl--~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l 234 (1011)
--+++.. .+...+. +.....+.|... .+..| ........-+..|.+.|+..++-.+++..-+. .| .+++.
T Consensus 228 ~rAvLLtAkA~s~lda-dp~~Ar~~A~~a----~KL~p-dlvPaav~AAralf~d~~~rKg~~ilE~aWK~-eP-HP~ia 299 (531)
T COG3898 228 SRAVLLTAKAMSLLDA-DPASARDDALEA----NKLAP-DLVPAAVVAARALFRDGNLRKGSKILETAWKA-EP-HPDIA 299 (531)
T ss_pred HHHHHHHHHHHHHhcC-ChHHHHHHHHHH----hhcCC-ccchHHHHHHHHHHhccchhhhhhHHHHHHhc-CC-ChHHH
Confidence 1111111 1111111 122233333333 33455 45557777889999999999999999988643 33 33322
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 001799 235 RMQGRLLARQGDYTAAA-QIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 235 ~l~a~ll~klg~~eeA~-~~~~kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
. ...+.+.|+..... +-.+++-.+.|+|.........+.+..+
T Consensus 300 ~--lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 300 L--LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred H--HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 1 12334455443322 3344555678899888877777776543
No 248
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.54 E-value=0.88 Score=42.06 Aligned_cols=78 Identities=24% Similarity=0.178 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 001799 31 ALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYE 110 (1011)
Q Consensus 31 AL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~Ye 110 (1011)
.+..+++.++.+|++..+.+..|..+...|++++|++.+-.++ ..+ ....|..+-..|-.+|..+|.-+.....|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v---~~d-r~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV---RRD-RDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH---CC--TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhC-ccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3567788899999999999999999999999999999887653 332 345667788888888888888766666666
Q ss_pred HH
Q 001799 111 YA 112 (1011)
Q Consensus 111 kA 112 (1011)
+-
T Consensus 83 Rk 84 (90)
T PF14561_consen 83 RK 84 (90)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=2.6 Score=45.48 Aligned_cols=137 Identities=12% Similarity=0.040 Sum_probs=98.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHH-CCChHHHHHHHHHHHHhhhhCCCCCCcHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYAL------ALKALVLER-MGKCDESLSVSLQAKDLLYQNDSTLMDDLT 88 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~------aLKA~aL~r-lgk~dEAl~l~~~alelL~~d~~~P~D~~a 88 (1011)
.-+...++..++...|+...++++..+-+-.... .-.|.++.. +.+++.|+..|+++.+....+.....--.+
T Consensus 77 YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC 156 (288)
T KOG1586|consen 77 YVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKC 156 (288)
T ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHH
Confidence 4567788899999999999999999877665432 244566655 489999999999987754322212222234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYACGKYHNNMD-------HMMGLFNCYVREYSFVKQQQTAIKMYKHAGE 152 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~e-------l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~ 152 (1011)
+.-.+..-..+++|.+|+.+|++..+..-+|.- ....-+.+++-..|...++++..+....+|.
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 555566667789999999999999887666542 2335567788878888888888887777774
No 250
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.75 E-value=0.29 Score=35.30 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 233 KLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 233 ~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
.++..|.++.+.|++++|.+.++++++..|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46678999999999999999999999999973
No 251
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.71 E-value=0.24 Score=33.94 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
.++..+|.++..++++++|...|+++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 467788999999999999999999999988863
No 252
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.62 E-value=12 Score=41.19 Aligned_cols=220 Identities=17% Similarity=0.188 Sum_probs=124.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHH--HHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPY--ALALKAL--VLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~--a~aLKA~--aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
.+.....++|+.-+++++...|.-.. .+++|-. +.+++|+++|-.+.+++.+..++...+-.....+.+.+-..-.
T Consensus 37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 34556899999999999999877654 5566655 5788999999999888876554422111222333443333333
Q ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHH----HHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCC
Q 001799 98 RLDRLDLATSCYEYACG--KYHNNMDHMM----GLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGN 171 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk--~~P~n~el~~----~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~ 171 (1011)
...+.+---+.|+..++ ++.+|+.+|. .++..|...++|.+.+++..+|.+.-... ++.
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e---------------dGe 181 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE---------------DGE 181 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc---------------cCc
Confidence 34444555556665554 3455555553 67888888888988888877665432211 111
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh--cccCCChH--HHHHH-HHHHHHHcCC
Q 001799 172 GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL--GSLLVIEV--DKLRM-QGRLLARQGD 246 (1011)
Q Consensus 172 ~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l--~~~~~~~~--~~l~l-~a~ll~klg~ 246 (1011)
+..+ .+.+--+..-+-+++|..|++..+--.++++++ ...+|... ...+. -|.++.+.|+
T Consensus 182 dD~k---------------KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~ 246 (440)
T KOG1464|consen 182 DDQK---------------KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE 246 (440)
T ss_pred hhhh---------------ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch
Confidence 1000 000000111112344455554444444444443 12233322 22222 2367888999
Q ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHH
Q 001799 247 YTAAAQIYKKILEL-----SPDDWECFLHY 271 (1011)
Q Consensus 247 ~eeA~~~~~kaL~~-----nPDdw~~~~~y 271 (1011)
|++|..-+-++.+. +|....++..+
T Consensus 247 fe~AhTDFFEAFKNYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 247 FEKAHTDFFEAFKNYDESGSPRRTTCLKYL 276 (440)
T ss_pred HHHHHhHHHHHHhcccccCCcchhHHHHHH
Confidence 99999988888875 46666666544
No 253
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.60 E-value=0.81 Score=54.56 Aligned_cols=99 Identities=17% Similarity=0.029 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPY-ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLD 103 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~-a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~ 103 (1011)
.||.-+|++....++-..|...+ ..+..|.++.+.|-..+|..++.+++.++ -..+.+.+.+|.+|..+++.+
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~------~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN------SSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc------ccCchHHHhcchhHHHHhhhH
Confidence 68999999999999888887655 46788899999999999999999988764 345688999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 104 LATSCYEYACGKYHNNMDHMMGLFNC 129 (1011)
Q Consensus 104 eA~~~YekAlk~~P~n~el~~~Lf~a 129 (1011)
.|++.++.|++++|++++....+...
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 99999999999999999887666544
No 254
>PRK10941 hypothetical protein; Provisional
Probab=91.38 E-value=1.5 Score=48.88 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=31.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKD 74 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~ale 74 (1011)
++.++|..|++.++.++...|++++-.--+|.++.++|.+..|..-++..++
T Consensus 192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4556666666666666666666666555566666666666666655555443
No 255
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.14 E-value=5.5 Score=38.75 Aligned_cols=99 Identities=13% Similarity=0.134 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNS------------PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL 83 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~------------~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P 83 (1011)
+.+....+..|-|..|...|.+++...-.- ...++..+-++..+|+++|++.....++........-.
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~ 92 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH 92 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence 344556678899999999999988764322 24567788889999999999999888876544322233
Q ss_pred CcHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 84 MDDL-----TLSTLQIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 84 ~D~~-----al~~Lg~~~~~lg~~~eA~~~YekAlk 114 (1011)
.|.- +....+..+..+|+.++|+..|+.+..
T Consensus 93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4432 233456788999999999999998865
No 256
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.11 E-value=18 Score=43.60 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=111.2
Q ss_pred CCcHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC---HHHHHHHHH
Q 001799 83 LMDDLTLSTLQIVFQRLDR--------------LDLATSCYEYACGKYHN-NMDHMMGLFNCYVREYS---FVKQQQTAI 144 (1011)
Q Consensus 83 P~D~~al~~Lg~~~~~lg~--------------~~eA~~~YekAlk~~P~-n~el~~~Lf~ayvr~~d---~~~Aqq~a~ 144 (1011)
+-.++.|+-....+.+.++ -+++..+||+++..--+ +.-+++.+.+.--...+ +++--..+.
T Consensus 276 ~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~ 355 (656)
T KOG1914|consen 276 GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYN 355 (656)
T ss_pred hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHH
Confidence 4566888877777776666 67899999999875433 22233333332222222 444455556
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHhh
Q 001799 145 KMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILE--QQSKYGDALEILSGT 222 (1011)
Q Consensus 145 kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~--~qgk~eEAL~~L~~~ 222 (1011)
++.+..-.++...|.....+.....| +..|.....|+-+.. ...-.++..+-.++ -+++++-|..+++-.
T Consensus 356 ~ll~~~~~~~tLv~~~~mn~irR~eG------lkaaR~iF~kaR~~~--r~~hhVfVa~A~mEy~cskD~~~AfrIFeLG 427 (656)
T KOG1914|consen 356 KLLKIEDIDLTLVYCQYMNFIRRAEG------LKAARKIFKKAREDK--RTRHHVFVAAALMEYYCSKDKETAFRIFELG 427 (656)
T ss_pred HHHhhhccCCceehhHHHHHHHHhhh------HHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHhcCChhHHHHHHHHH
Confidence 66665555543344333333322222 456666666655533 23345555554444 467889999999998
Q ss_pred hcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC-HHHHHHHH
Q 001799 223 LGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILEL--SPDD-WECFLHYL 272 (1011)
Q Consensus 223 l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~--nPDd-w~~~~~yl 272 (1011)
+.. .++.+..-....+.+..+|+-..|..++++++.. .||. -..|..++
T Consensus 428 Lkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l 479 (656)
T KOG1914|consen 428 LKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRML 479 (656)
T ss_pred HHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHH
Confidence 865 7888776555568899999999999999999987 4442 34444443
No 257
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=90.71 E-value=0.69 Score=51.31 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=56.3
Q ss_pred HHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 001799 56 LERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMG 125 (1011)
Q Consensus 56 L~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~ 125 (1011)
..+.|+.++|..+++.|+.+ .|++++++..+|.+....++.-+|-.+|-+|+...|.|.+++.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 45679999999999999876 68999999999999988888899999999999999999987653
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.44 E-value=23 Score=40.71 Aligned_cols=191 Identities=14% Similarity=0.095 Sum_probs=112.9
Q ss_pred HcCCHHHHHHHHHHHHHhCC-----CC-HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCC-CCCCcHHHHHHHHHHH
Q 001799 24 DSRQFKNALKQSTALLAKYP-----NS-PYALALKALVLERMGKCDESLSVSLQAKDLLYQND-STLMDDLTLSTLQIVF 96 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P-----~~-~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~-~~P~D~~al~~Lg~~~ 96 (1011)
+.|.|++++...--.+...- .. -.++...+....+.-++.+++.+++..+++-..+. ..| -.++..++.++
T Consensus 55 ~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~--gq~~l~~~~Ah 132 (518)
T KOG1941|consen 55 EMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLG--GQVSLSMGNAH 132 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccccc--chhhhhHHHHh
Confidence 56788877665544333211 11 35667777777888888888888877655311110 122 26677788889
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC----c---HH--HHHHHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMD------HMMGLFNCYVREYSFVKQQQTAIKMYKHAGE----E---RF--LLWAVC 161 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~e------l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~----~---ry--~~Wai~ 161 (1011)
..++.++++++.||.|++.--++.+ +...++..+.+..|+.+|.-..-+.+.+..+ + .| ....-|
T Consensus 133 lgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhm 212 (518)
T KOG1941|consen 133 LGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHM 212 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHH
Confidence 9999999999999998886554433 3447888888888888887666555544321 1 12 111223
Q ss_pred HHHH--HHhcCCcHHH----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 001799 162 SIQL--QVLCGNGGEK----LLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL 223 (1011)
Q Consensus 162 sl~L--q~~~~~~a~k----lL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l 223 (1011)
++.+ +..-+ ++.. .-++|..+=++ + -...-+..++.||...|+.+.|..-++.+.
T Consensus 213 aValR~~G~Lg-dA~e~C~Ea~klal~~Gdr-----a-~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 213 AVALRLLGRLG-DAMECCEEAMKLALQHGDR-----A-LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHhcccc-cHHHHHHHHHHHHHHhCCh-----H-HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3333 22212 2222 22333332222 2 234567778888888887777777776653
No 259
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.43 E-value=1.6 Score=51.08 Aligned_cols=130 Identities=15% Similarity=0.081 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
..|-.+++.|+...|-+.+..+|+.+|..|....+.+.+...+|.++.|++.+..+-..+ .+-..++..+-.-+
T Consensus 294 ~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~------~s~~~~~~~~~r~~ 367 (831)
T PRK15180 294 LSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII------GTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh------cCCchHHHHHHHhh
Confidence 467788999999999999999999999999999999999999999999999876653332 23345666666777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE 152 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~ 152 (1011)
-.++++++|..+-+-.+.-.-+++|+..-.+-..-..+-+.++--.-.+++..+|.
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 78999999998888887777777777654444444445455555544566666654
No 260
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.31 E-value=0.82 Score=38.03 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001799 233 KLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFL 269 (1011)
Q Consensus 233 ~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~ 269 (1011)
.++..|..+.++|+|++|..+++.+|+.+|+|-++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4677888999999999999999999999999998864
No 261
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.89 E-value=1 Score=37.52 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001799 20 WDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLE 57 (1011)
Q Consensus 20 ~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~ 57 (1011)
...+..|+|.+|.+.++.+|+..|+|..+..++..+--
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~ 46 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIED 46 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999999998888877643
No 262
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.59 E-value=69 Score=40.93 Aligned_cols=240 Identities=15% Similarity=0.066 Sum_probs=136.0
Q ss_pred HHHHHHcCCHHHHHHHHHHH----------------HHhCC-----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhh
Q 001799 19 IWDAIDSRQFKNALKQSTAL----------------LAKYP-----NSPYALALKALVLERMGKCDESLSVSLQAKDLLY 77 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dkl----------------LKk~P-----~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~ 77 (1011)
|-.++..|++..|-.++++. ++.=| ++|..-.+.|..+....+++||-.++.++...++
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~ 446 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK 446 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC
Confidence 45677888888887777665 22223 2344566778888889999999999988766544
Q ss_pred hCCCCC-Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHhcCHHHHHHHHHHHH--
Q 001799 78 QNDSTL-MD--DLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMD-----HMMGLFNCYVREYSFVKQQQTAIKMY-- 147 (1011)
Q Consensus 78 ~d~~~P-~D--~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~e-----l~~~Lf~ayvr~~d~~~Aqq~a~kL~-- 147 (1011)
..+..+ .+ ....-+-+.+....|++++|.++-+.++..-|.+.. .....+.+.+-.|++.+|........
T Consensus 447 ~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 447 APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 211111 11 122334566788899999999999999998887543 33467778888899988754433333
Q ss_pred -HHcCCcHHHHHHHH--HHHHHHhcCCcHHHHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 001799 148 -KHAGEERFLLWAVC--SIQLQVLCGNGGEKLLLLAEGLLK-KHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTL 223 (1011)
Q Consensus 148 -K~~P~~ry~~Wai~--sl~Lq~~~~~~a~klL~LAek~Le-kai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l 223 (1011)
+......+..|+.+ +.+++. .+..+..-...+...+. ......| ...-.+..++.++...-+++.+.......+
T Consensus 527 a~~~~~~~l~~~~~~~~s~il~~-qGq~~~a~~~~~~~~~~~q~l~q~~-~~~f~~~~r~~ll~~~~r~~~~~~ear~~~ 604 (894)
T COG2909 527 ARQHDVYHLALWSLLQQSEILEA-QGQVARAEQEKAFNLIREQHLEQKP-RHEFLVRIRAQLLRAWLRLDLAEAEARLGI 604 (894)
T ss_pred HHHcccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHHHHHHHhhhhHHhhhcc
Confidence 32333334445433 222221 11100000011111111 1112233 223345555666665555655544433321
Q ss_pred --ccc-CCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 224 --GSL-LVIEV---DKLRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 224 --~~~-~~~~~---~~l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
+.. .+... ..+++++.+....|++++|.....++...
T Consensus 605 ~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 605 EVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 12211 12347788999999999999999888764
No 263
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.48 E-value=5.9 Score=47.14 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHH
Q 001799 46 PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGK-YHNNMDHMM 124 (1011)
Q Consensus 46 ~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~-~P~n~el~~ 124 (1011)
.+++...|.++.++|+.+||++.++..++.. +.-+......+|-.++.++++|.++.++..+.-.. -|+...+.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~----p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF----PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC----CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 3566777888999999999999998764431 11134557889999999999999998887775332 366565555
Q ss_pred HH
Q 001799 125 GL 126 (1011)
Q Consensus 125 ~L 126 (1011)
.-
T Consensus 335 Ta 336 (539)
T PF04184_consen 335 TA 336 (539)
T ss_pred HH
Confidence 33
No 264
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.68 E-value=12 Score=42.73 Aligned_cols=94 Identities=9% Similarity=-0.078 Sum_probs=71.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------------hHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHc
Q 001799 32 LKQSTALLAKYPNSPYALALKALVLERMGK------------CDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRL 99 (1011)
Q Consensus 32 L~l~dklLKk~P~~~~a~aLKA~aL~rlgk------------~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~l 99 (1011)
...+++.++.+|++..++.-.+...-..-. .+..+.++++|++. .|.+...+..+-.+..+.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~------np~~~~L~l~~l~~~~~~ 78 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH------NPDSERLLLGYLEEGEKV 78 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHh
Confidence 346788999999998877655544333211 34556678888654 588888888888888889
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001799 100 DRLDLATSCYEYACGKYHNNMDHMMGLFNCYV 131 (1011)
Q Consensus 100 g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayv 131 (1011)
...++..+.|+++++.+|++..++..+.....
T Consensus 79 ~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFKNPGSPELWREYLDFRQ 110 (321)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 89999999999999999999999887765543
No 265
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=88.66 E-value=2.2 Score=40.98 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=67.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSP---YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~---~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
..+++..||+-+|++..+..+..++++. ....+.|.+..++... . .+| |...-+++|
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~-------------t----en~-d~k~~yLl~-- 62 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK-------------T----ENP-DVKFRYLLG-- 62 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh-------------c----cCc-hHHHHHHHH--
Confidence 4678999999999999999999999886 4555566554433211 0 122 444444443
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
++++|.+++...|.....++.++.-+--...|+++.+.+.+.+
T Consensus 63 ---------sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 63 ---------SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred ---------hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 5678999999999875555555555444667887777666544
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.42 E-value=0.74 Score=34.68 Aligned_cols=27 Identities=41% Similarity=0.705 Sum_probs=21.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 234 LRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 234 l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
+..+|.++.+.|+|++|+++|+++|..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455788999999999999999996643
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.14 E-value=5.4 Score=45.25 Aligned_cols=119 Identities=15% Similarity=0.023 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hhhhCCC---------
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYP----NSPYALALKALVLERMGKCDESLSVSLQAKD-LLYQNDS--------- 81 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P----~~~~a~aLKA~aL~rlgk~dEAl~l~~~ale-lL~~d~~--------- 81 (1011)
++-+--+-..|++..|...+.++.+..+ ..+...+.++..+...|+..+|+..++..++ .+..+..
T Consensus 150 l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~ 229 (352)
T PF02259_consen 150 LKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKS 229 (352)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhh
Confidence 4445557789999999999999887542 2567888899999999999999999887765 2221100
Q ss_pred ------------------CCCcHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 001799 82 ------------------TLMDDLTLSTLQIVFQRL------DRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREY 134 (1011)
Q Consensus 82 ------------------~P~D~~al~~Lg~~~~~l------g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~ 134 (1011)
...-..++..+|...... +..+++.+.|+.|++.+|+....+..|+..+.+.-
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 230 GLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 001123444555555556 77888899999999999998888888887765443
No 268
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.03 E-value=2 Score=48.39 Aligned_cols=92 Identities=16% Similarity=0.078 Sum_probs=51.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSP----YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~----~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
+-.+++..++|+.|...|.+.||+.-.++ ..+..+|.+..-+|++..|+.-|.+++.+ .|++..++..=+
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAYIRGA 160 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------Ccchhhhhhhhh
Confidence 33455566666666666666666533332 23445566666666666666666655433 456666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 001799 94 IVFQRLDRLDLATSCYEYACGK 115 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~ 115 (1011)
.|+.++.++++|+...+..+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhh
Confidence 6666666666665555544333
No 269
>PRK10941 hypothetical protein; Provisional
Probab=87.77 E-value=2.2 Score=47.48 Aligned_cols=65 Identities=17% Similarity=0.068 Sum_probs=58.4
Q ss_pred HHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 001799 203 ISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECF 268 (1011)
Q Consensus 203 ~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~ 268 (1011)
-.++.+.++++.|+.+.+..+. ..|+++.-++-+|.+|.++|.+..|..-++..++..|++..+-
T Consensus 188 K~~~~~~~~~~~AL~~~e~ll~-l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 188 KAALMEEKQMELALRASEALLQ-FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHcCcHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 3677889999999999999985 4788888788899999999999999999999999999987763
No 270
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.69 E-value=26 Score=43.32 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH------HHHH----hCCCCH-HHHHHHHHHHHHhcCHHHHHHH
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYE------YACG----KYHNNM-DHMMGLFNCYVREYSFVKQQQT 142 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~Ye------kAlk----~~P~n~-el~~~Lf~ayvr~~d~~~Aqq~ 142 (1011)
+.+..-|.+|....++++|+++|+ +|++ ..|... .+-..|+......|++..|...
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainh 728 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINH 728 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHH
Confidence 445556777777777888877764 3333 345321 1222455555555555555443
No 271
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.50 E-value=23 Score=45.37 Aligned_cols=174 Identities=11% Similarity=0.071 Sum_probs=97.7
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 001799 59 MGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVK 138 (1011)
Q Consensus 59 lgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~ 138 (1011)
.+..|.|.+..+++ +.+.+|..++.+....|...+|++.|-+| -+|. .+........+.|.|++
T Consensus 1088 i~~ldRA~efAe~~-----------n~p~vWsqlakAQL~~~~v~dAieSyika--dDps---~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DDPS---NYLEVIDVASRTGKYED 1151 (1666)
T ss_pred hhhHHHHHHHHHhh-----------CChHHHHHHHHHHHhcCchHHHHHHHHhc--CCcH---HHHHHHHHHHhcCcHHH
Confidence 45555565554432 34577888888777777777887777554 3444 44566677777777776
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 001799 139 QQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEI 218 (1011)
Q Consensus 139 Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~ 218 (1011)
-.+. ..|.+.....+| .=..+..++ +..+ -+...+..+ .. .+..-+...+.=+...|.|+.|--+
T Consensus 1152 Lv~y-L~MaRkk~~E~~-id~eLi~Ay-Akt~-----rl~elE~fi-----~g--pN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1152 LVKY-LLMARKKVREPY-IDSELIFAY-AKTN-----RLTELEEFI-----AG--PNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHH-HHHHHHhhcCcc-chHHHHHHH-HHhc-----hHHHHHHHh-----cC--CCchhHHHHhHHHhhhhhhHHHHHH
Confidence 6553 233333322222 000011111 0100 011122222 12 2445556666667777777766555
Q ss_pred HHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 001799 219 LSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 219 L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~ 277 (1011)
+...- -+-.+|..+..+|+|+.|.+..+++ ++...|.....++.+
T Consensus 1217 y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1217 YSNVS---------NFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVD 1261 (1666)
T ss_pred HHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhc
Confidence 44431 1344678889999999999988876 456677776666554
No 272
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=87.43 E-value=20 Score=41.82 Aligned_cols=30 Identities=13% Similarity=-0.080 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 001799 234 LRMQGRLLARQGDY---------------TAAAQIYKKILELSPD 263 (1011)
Q Consensus 234 l~l~a~ll~klg~~---------------eeA~~~~~kaL~~nPD 263 (1011)
.+-.|.++..+++- ++|....++++..-|.
T Consensus 181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 34445555566666 8999999999998774
No 273
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.30 E-value=37 Score=37.26 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=45.2
Q ss_pred HHHHHHcCChHHHHHHHHhhhccc--C--CChHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHH
Q 001799 203 ISILEQQSKYGDALEILSGTLGSL--L--VIEVDKLRMQG--RLLARQGDYTAAAQIYKKILEL----SPDDWECFLHYL 272 (1011)
Q Consensus 203 ~~IL~~qgk~eEAL~~L~~~l~~~--~--~~~~~~l~l~a--~ll~klg~~eeA~~~~~kaL~~----nPDdw~~~~~yl 272 (1011)
+++|.+.++|+||-..+.+..... . -...-..+. | .++....+|..|...+++.-+. .|++-.....++
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~v-a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYV-AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHH-HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 367778888888766665542110 0 011111222 3 3344567999999999887653 577888888888
Q ss_pred HHHhc
Q 001799 273 GCLLE 277 (1011)
Q Consensus 273 ~all~ 277 (1011)
...-+
T Consensus 236 ~ayd~ 240 (308)
T KOG1585|consen 236 TAYDE 240 (308)
T ss_pred HHhcc
Confidence 76544
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.18 E-value=21 Score=36.59 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHH
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
-.+.-+.-++..++...+..+++.+--..|+.+......|.++.+.|++.+|+.+++.+.+ ..|..+.+--+++
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------~~~~~p~~kALlA 85 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------RAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------cCCCChHHHHHHH
Confidence 3445566778888999999999998888999999999999999999999999999987533 2577778888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 001799 94 IVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQ 140 (1011)
Q Consensus 94 ~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aq 140 (1011)
.|+..+++++ -..|...+-..+.+++. ..+........+...|.
T Consensus 86 ~CL~~~~D~~--Wr~~A~evle~~~d~~a-~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 86 LCLYALGDPS--WRRYADEVLESGADPDA-RALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHcCChH--HHHHHHHHHhcCCChHH-HHHHHHHHHhccccchh
Confidence 9998888754 22333322233334443 33444444444444443
No 275
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.86 E-value=11 Score=41.18 Aligned_cols=69 Identities=23% Similarity=0.180 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 198 ALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 267 (1011)
Q Consensus 198 el~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~ 267 (1011)
-+..|++.+...|+|=|+++..+..+.. .|.+...++.+|.+....=+.++|.+-++++|+++|--..+
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 6778999999999999999999999865 78888899999999888888999999999999998864443
No 276
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.45 E-value=0.78 Score=53.91 Aligned_cols=98 Identities=11% Similarity=-0.061 Sum_probs=79.6
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 001799 52 KALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYV 131 (1011)
Q Consensus 52 KA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayv 131 (1011)
+|.-.+.-++++.|+.++.+|+++ .|+.+..+...+..+...+.+..|+.=.-+|++.+|.....++.-+.+++
T Consensus 10 ean~~l~~~~fd~avdlysKaI~l------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIEL------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhc------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 344455567888999999888876 57777777777788888888999988888899999988778888888888
Q ss_pred HhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 132 REYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 132 r~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
..+.+++|...+.+..+..|+.++
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHH
Confidence 888888888888888888888776
No 277
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=86.42 E-value=2 Score=50.94 Aligned_cols=102 Identities=18% Similarity=0.096 Sum_probs=83.2
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERM---GKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rl---gk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
|+-+.+-.+.+..+.+..|+..+.+.+...|...+.+..+|.++.+. |+.-.|+.-|..++.+ .|....++
T Consensus 375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~~kah 448 (758)
T KOG1310|consen 375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSIQKAH 448 (758)
T ss_pred HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHHHHHH
Confidence 44455555677778889999999999999999999999999998875 5555666667766553 67888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYACGKYHNNM 120 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~ 120 (1011)
.-|+.++.+++++.+|+.+-..+....|.+.
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchhh
Confidence 9999999999999999998888777888654
No 278
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.24 E-value=1.8 Score=32.73 Aligned_cols=29 Identities=21% Similarity=0.149 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGK 115 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~ 115 (1011)
.++..||.+|...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999999874
No 279
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.19 E-value=2.3 Score=46.05 Aligned_cols=84 Identities=7% Similarity=-0.054 Sum_probs=49.8
Q ss_pred HHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 001799 56 LERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYS 135 (1011)
Q Consensus 56 L~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d 135 (1011)
++...+++.|+..|.+++.+ .|+-+..+..-+.|+..+++++.+..--++|++..|+.....+.+++..+....
T Consensus 20 ~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred ccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34445566666666665443 455555566666666666666666666666666666665555666666666666
Q ss_pred HHHHHHHHHH
Q 001799 136 FVKQQQTAIK 145 (1011)
Q Consensus 136 ~~~Aqq~a~k 145 (1011)
|..|.....+
T Consensus 94 ~~eaI~~Lqr 103 (284)
T KOG4642|consen 94 YDEAIKVLQR 103 (284)
T ss_pred ccHHHHHHHH
Confidence 6665554433
No 280
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.30 E-value=1.5 Score=29.77 Aligned_cols=32 Identities=38% Similarity=0.630 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 233 KLRMQGRLLARQGDYTAAAQIYKKILELSPDD 264 (1011)
Q Consensus 233 ~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDd 264 (1011)
.+..+|.++...|++++|...++++++.+|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 35667888899999999999999999888763
No 281
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.28 E-value=2.1 Score=42.96 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=43.4
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDE 64 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dE 64 (1011)
++-+....++++.|+|.-|+.+++.++..+|++..++.+|+.++.++|...+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 5778888899999999999999999999999999999999999888775544
No 282
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.75 E-value=52 Score=42.46 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 001799 26 RQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLA 105 (1011)
Q Consensus 26 gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA 105 (1011)
++.+.|...++++ +.|..|.-.|-+..+.|...+|++-+-++ .|+..+...-.+-...|.|++-
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----------CCcHHHHHHHHHHHhcCcHHHH
Confidence 5666776666664 66788999999999999999999988653 4567777777788889999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 001799 106 TSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQ 139 (1011)
Q Consensus 106 ~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~A 139 (1011)
++.+..|-++--. +.+-..+..+|.+.++..+.
T Consensus 1153 v~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1153 VKYLLMARKKVRE-PYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHH
Confidence 9988888765433 23445677777777766554
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.51 E-value=13 Score=44.23 Aligned_cols=58 Identities=9% Similarity=0.193 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001799 105 ATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSI 163 (1011)
Q Consensus 105 A~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl 163 (1011)
...+|+.|..+.|.|..++..+..-+...+.+.+..+++.++.+.+|+++. .|..++.
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d-LWI~aA~ 147 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD-LWIYAAK 147 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch-hHHhhhh
Confidence 444555555555555555555554444444455555555555555565555 4544443
No 284
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=82.86 E-value=36 Score=39.88 Aligned_cols=178 Identities=16% Similarity=0.159 Sum_probs=106.2
Q ss_pred HcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC-----------ChHHHHHHHHHHHHhhhhCCCCCCcHHHHH
Q 001799 24 DSRQF-KNALKQSTALLAKYPNSPYALALKALVLER-MG-----------KCDESLSVSLQAKDLLYQNDSTLMDDLTLS 90 (1011)
Q Consensus 24 d~gn~-KqAL~l~dklLKk~P~~~~a~aLKA~aL~r-lg-----------k~dEAl~l~~~alelL~~d~~~P~D~~al~ 90 (1011)
+.|.| ..++++-.++++++|+...++..+-.++.. +- -.++-+.....++.. .|++-.+|+
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~------npksY~aW~ 113 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKV------NPKSYGAWH 113 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHh------CchhHHHHH
Confidence 34444 457899999999999998887665555433 22 233334444444332 689999999
Q ss_pred HHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhcC---HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRL--DLATSCYEYACGKYHNNMDHMM-GLFNCYVREYS---FVKQQQTAIKMYKHAGEERFLLWAVCSIQ 164 (1011)
Q Consensus 91 ~Lg~~~~~lg~~--~eA~~~YekAlk~~P~n~el~~-~Lf~ayvr~~d---~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~ 164 (1011)
..-+++...+.+ ..-+.+.+++++.+|.|...+. .-|..-..... ..+-.+...++...++.| |..|.--+.+
T Consensus 114 hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSN-YsaWhyRs~l 192 (421)
T KOG0529|consen 114 HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSN-YSAWHYRSLL 192 (421)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchh-hhHHHHHHHH
Confidence 999999887754 5677889999999999877553 33333222222 344444445666555555 6678666666
Q ss_pred HHHhcCC---c---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcC
Q 001799 165 LQVLCGN---G---GEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQS 210 (1011)
Q Consensus 165 Lq~~~~~---~---a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qg 210 (1011)
++...+. + +...+..-..++.+++=.+| ++...+++ .+.+..+|
T Consensus 193 L~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp-~DqS~WfY-~rWLl~~~ 242 (421)
T KOG0529|consen 193 LSTLHPKEADGNFMPKELLQSELEMVHSAIFTDP-EDQSCWFY-HRWLLGRG 242 (421)
T ss_pred HHHhccccccCccCCHHHHHHHHHHHHHHHhcCc-cccceeee-hHHhhccc
Confidence 6533322 1 12233333445555555565 44444443 44444444
No 285
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.85 E-value=9.9 Score=45.21 Aligned_cols=77 Identities=9% Similarity=-0.009 Sum_probs=63.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHcCCcHHHHHH
Q 001799 82 TLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREY-SFVKQQQTAIKMYKHAGEERFLLWA 159 (1011)
Q Consensus 82 ~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~-d~~~Aqq~a~kL~K~~P~~ry~~Wa 159 (1011)
.+.|...|.......+..+.+.+.-.+|.++++.+|+|+++|...+.--...+ +.+.+.....+-++.+|+++- .|.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~-Lw~ 178 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPK-LWK 178 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChH-HHH
Confidence 67899999988888888888999999999999999999999876654444444 488888888888999999886 453
No 286
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.84 E-value=3.2 Score=38.35 Aligned_cols=47 Identities=9% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCC
Q 001799 106 TSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGE 152 (1011)
Q Consensus 106 ~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~ 152 (1011)
+..++++++.+|+|.++.+.++..++..|++..|......+.+..++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 34566777777777777777777777777777777766666655543
No 287
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.56 E-value=55 Score=39.27 Aligned_cols=104 Identities=20% Similarity=0.160 Sum_probs=64.1
Q ss_pred HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQST--ALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~d--klLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~ 95 (1011)
+...++-+|++.++++... +++..-|.. ..-.-+.-|.+.|.++.|+..+ +|++...-|+
T Consensus 267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~~~--~~~~i~~fL~~~G~~e~AL~~~--------------~D~~~rFeLA-- 328 (443)
T PF04053_consen 267 EFKTAVLRGDFEEVLRMIAASNLLPNIPKD--QGQSIARFLEKKGYPELALQFV--------------TDPDHRFELA-- 328 (443)
T ss_dssp HHHHHHHTT-HHH-----HHHHTGGG--HH--HHHHHHHHHHHTT-HHHHHHHS--------------S-HHHHHHHH--
T ss_pred HHHHHHHcCChhhhhhhhhhhhhcccCChh--HHHHHHHHHHHCCCHHHHHhhc--------------CChHHHhHHH--
Confidence 3456788999999888776 444344422 2333444567789999988863 4556555444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIK 145 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~k 145 (1011)
.++|+.+.|.+. ....++++.|.+++..+++.|+++-|++++.+
T Consensus 329 -l~lg~L~~A~~~-----a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 329 -LQLGNLDIALEI-----AKELDDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp -HHCT-HHHHHHH-----CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred -HhcCCHHHHHHH-----HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 568898888653 24445788999999999999999998887543
No 288
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=81.10 E-value=3.5 Score=45.96 Aligned_cols=73 Identities=14% Similarity=0.063 Sum_probs=64.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI 94 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~ 94 (1011)
++...+....|+.++|.++++.+++..|+++.++.-.|......++.-+|-.+|-+|+.+ +|.+.+++.+...
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti------sP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI------SPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee------CCCchHHHhhhhc
Confidence 677888889999999999999999999999999999999998889999999999888654 7888888766544
No 289
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.74 E-value=2.3 Score=45.76 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=43.9
Q ss_pred HHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 001799 55 VLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNM 120 (1011)
Q Consensus 55 aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~ 120 (1011)
.+...++.+-|.+++.+++++ .|.+...|..+|......|+.+.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~l------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALEL------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhc------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 345567777777777777665 577777777777777777788877777888888777653
No 290
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.23 E-value=2.1 Score=45.98 Aligned_cols=63 Identities=24% Similarity=0.321 Sum_probs=54.0
Q ss_pred HHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 204 SILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWEC 267 (1011)
Q Consensus 204 ~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~ 267 (1011)
..+.+.++.+.|.+++.+++.. .|....-|+..|.+-.+.|+.+.|.+.|++.|+.+|+|-..
T Consensus 3 ~~~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred chhcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 3455678889999999999863 67777778889999999999999999999999999998554
No 291
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.10 E-value=81 Score=39.32 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=67.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH
Q 001799 24 DSRQFKNALKQSTALLAKYPNSP-YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL 102 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~-~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~ 102 (1011)
..|+|.+|.++.++... |... -.+..||.-+-..|++.||..+|-.+ ..|. .+ -..|...|.+
T Consensus 803 k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti--------~~p~--~a----iqmydk~~~~ 866 (1636)
T KOG3616|consen 803 KAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI--------GEPD--KA----IQMYDKHGLD 866 (1636)
T ss_pred ccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc--------cCch--HH----HHHHHhhCcc
Confidence 46788888887777644 4433 34566777788888888888876432 1232 11 2456777778
Q ss_pred HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 001799 103 DLATSCYEYACGKYHNN-MDHMMGLFNCYVREYSFVKQQQTAIKM 146 (1011)
Q Consensus 103 ~eA~~~YekAlk~~P~n-~el~~~Lf~ayvr~~d~~~Aqq~a~kL 146 (1011)
++.+.+-++ -.|+. .+...+++.-|-..|+.+.|...+.+.
T Consensus 867 ddmirlv~k---~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 867 DDMIRLVEK---HHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hHHHHHHHH---hChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 877665544 34442 245667888888889988887765543
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.05 E-value=1.5e+02 Score=35.94 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=122.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----------------CChHH--HHHHHHHHHHhhhh
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERM----------------GKCDE--SLSVSLQAKDLLYQ 78 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rl----------------gk~dE--Al~l~~~alelL~~ 78 (1011)
+-|.++.++|=.+-....|+.-|+...++..+++.-|.+-+.. .+..- -..+|.++++.
T Consensus 19 ~~i~~~~~~~~~~~~~~ic~~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--- 95 (711)
T COG1747 19 RIIAEAKRQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--- 95 (711)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHh---
Confidence 3455677888888888899999998888888888887764432 11222 22467666543
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHcCCcH---
Q 001799 79 NDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMY-KHAGEER--- 154 (1011)
Q Consensus 79 d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~-K~~P~~r--- 154 (1011)
..+-.++..++.+|.+. ..++...+|++.++.+=++......|+..|-. .+-.++...+.++. +.-|...
T Consensus 96 ----~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~ 169 (711)
T COG1747 96 ----GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAA 169 (711)
T ss_pred ----cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhh
Confidence 34567899999999998 66888899999999999998888899888876 66666555555444 4445321
Q ss_pred -HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHHcCChHHHHHHHHhhhcc
Q 001799 155 -FLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYI-SILEQQSKYGDALEILSGTLGS 225 (1011)
Q Consensus 155 -y~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~-~IL~~qgk~eEAL~~L~~~l~~ 225 (1011)
--.|.-+-.+. +++.+..+.+-.+.- ...+......++-.. .-|....++.||+.++...+..
T Consensus 170 i~evWeKL~~~i----~dD~D~fl~l~~kiq----t~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 170 IKEVWEKLPELI----GDDKDFFLRLQKKIQ----TKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHHHHHHHHHhc----cccHHHHHHHHHHHH----HhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 22564433221 333344444433332 222211222222222 4456678999999999988753
No 293
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=79.81 E-value=1.5e+02 Score=36.03 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=113.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCC--------------hHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHc--
Q 001799 36 TALLAKYPNSPYALALKALVLERMGK--------------CDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRL-- 99 (1011)
Q Consensus 36 dklLKk~P~~~~a~aLKA~aL~rlgk--------------~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~l-- 99 (1011)
++.|---+-++..++--+.-+...++ .+||..+++.+++.+.+ .+...+..++..-...
T Consensus 269 eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~-----~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 269 EQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK-----ENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHhcc
Confidence 44444445555555444443333333 67777788877665321 2333333444332222
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHH
Q 001799 100 -DRLDLATSCYEYACGKYHNNMDHMMGLFNCYVRE-YSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 100 -g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~-~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL 177 (1011)
++++..-..|++++++.-.++.+.+-..+-+++. .-.+.|..++.++- ..+..+|.. .+.+.++...+..+.+.++
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR-~~~r~~hhV-fVa~A~mEy~cskD~~~Af 421 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR-EDKRTRHHV-FVAAALMEYYCSKDKETAF 421 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh-hccCCcchh-hHHHHHHHHHhcCChhHHH
Confidence 2366677789999887777776666444444444 44444444444443 234444322 2333444444433333333
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCC-Ch-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 001799 178 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLV-IE-VDKLRMQGRLLARQGDYTAAAQIYK 255 (1011)
Q Consensus 178 ~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~-~~-~~~l~l~a~ll~klg~~eeA~~~~~ 255 (1011)
...+--++ .-+ ..++-++-|...|...++-..|..++++.+...++ +. ...|...-.+--+-|+...+.++-+
T Consensus 422 rIFeLGLk----kf~-d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 422 RIFELGLK----KFG-DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEK 496 (656)
T ss_pred HHHHHHHH----hcC-CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 32222222 223 56778888999999999989999999998754222 11 2223222233344566666666655
Q ss_pred HHHHhCC
Q 001799 256 KILELSP 262 (1011)
Q Consensus 256 kaL~~nP 262 (1011)
+-...-|
T Consensus 497 R~~~af~ 503 (656)
T KOG1914|consen 497 RRFTAFP 503 (656)
T ss_pred HHHHhcc
Confidence 5554444
No 294
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=79.62 E-value=14 Score=36.85 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHcCCh---HHHHHHHHhhhcccCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001799 194 HEPEALIVYISILEQQSKY---GDALEILSGTLGSLLV-IEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFL 269 (1011)
Q Consensus 194 ~~~eel~l~~~IL~~qgk~---eEAL~~L~~~l~~~~~-~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~ 269 (1011)
-+.+..+.|+..|....+. .+.+.+|+..+....| .+.+.+|.+|.-+.++++|+.+..++..+|+.+|+|-++..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3566777888888766543 5568888887742233 33456777899999999999999999999999999988753
No 295
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=79.40 E-value=15 Score=33.99 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhh
Q 001799 20 WDAIDSRQFKNALKQSTALLAK----YPNS-----PYALALKALVLERMGKCDESLSVSLQAKDLLY 77 (1011)
Q Consensus 20 ~dald~gn~KqAL~l~dklLKk----~P~~-----~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~ 77 (1011)
..++..|+|..|+..+.+.... .... .++...+|.+....|++++|+..+++++++-.
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3567788888886655555433 2211 34556666677777777777777777766543
No 296
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.16 E-value=16 Score=44.39 Aligned_cols=99 Identities=19% Similarity=0.012 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH-HHHhhhhCCCCCCcHHHHHHH------HHHHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQ-AKDLLYQNDSTLMDDLTLSTL------QIVFQ 97 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~-alelL~~d~~~P~D~~al~~L------g~~~~ 97 (1011)
.+..+.+.....+.++.+|++..+....+.++...|..-.+.....+ +... .|.+..++..+ +..+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 80 LADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWL------SPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred cccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc------CcchHHHHhhHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555544444433322 2111 34444444333 44555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNC 129 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~a 129 (1011)
.+|+..++....++++.+.|++.++..+|...
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55555555555555555555555544444444
No 297
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.51 E-value=12 Score=34.63 Aligned_cols=65 Identities=20% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHCCChHHHHHHHHHHHHhhhhCCCCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001799 54 LVLERMGKCDESLSVSLQAKDLLYQNDSTL---MDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHN 118 (1011)
Q Consensus 54 ~aL~rlgk~dEAl~l~~~alelL~~d~~~P---~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~ 118 (1011)
.-..+.|++.+|++.+.+..+.-......+ .-..++..++.+....|++++|+..++.|++.-..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 345688999999998888776543321111 23456777889999999999999999999986554
No 298
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=78.15 E-value=82 Score=36.73 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
+..+.+.+.++...=+ .+|+++|-|..++...+.++.++|+.+.|.+++++|+-. ++.++
T Consensus 15 ~~F~~~v~~~Dp~~l~----~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----------------~e~~~ 74 (360)
T PF04910_consen 15 EQFYAAVQSHDPNALI----NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----------------FERAF 74 (360)
T ss_pred HHHHHHHHccCHHHHH----HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------HHHHH
Confidence 3444556666554433 456889999999999999999999999999988876432 22221
Q ss_pred HHcC-----CHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHhcCHHHHHHHHHHHHHHcCC-cHH
Q 001799 97 QRLD-----RLDLATSCYEYACGKYHNNMDHMM---GLFNCYVREYSFVKQQQTAIKMYKHAGE-ERF 155 (1011)
Q Consensus 97 ~~lg-----~~~eA~~~YekAlk~~P~n~el~~---~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~-~ry 155 (1011)
-..= +.... --+.--..|.|..++. .......+.|.+..|-..+.-|+..+|. +|+
T Consensus 75 ~~~F~~~~~~~~~g---~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~ 139 (360)
T PF04910_consen 75 HPSFSPFRSNLTSG---NCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL 139 (360)
T ss_pred HHHhhhhhcccccC---ccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence 1100 00000 0000013456666555 4447788999999999999999999998 775
No 299
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=77.88 E-value=1.9e+02 Score=36.07 Aligned_cols=205 Identities=13% Similarity=-0.005 Sum_probs=103.7
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhhhhCC---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCC
Q 001799 50 ALKALVLERMGKCDESLSVSLQAKDLLYQND---STLMDDLTLSTLQIVFQRLDRLDLATSCYE--------YACGKYHN 118 (1011)
Q Consensus 50 aLKA~aL~rlgk~dEAl~l~~~alelL~~d~---~~P~D~~al~~Lg~~~~~lg~~~eA~~~Ye--------kAlk~~P~ 118 (1011)
...+...+-.|++..|......+.+.....+ ..+..+..+++.|..+...|+.+.|...|. .+....|.
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 3444455557999999888877654322110 012347788899999999999999999997 55555665
Q ss_pred CHHHHH----HHHHHHHHhcCHHHHHHHHHHHH-HHcCC-----cH-HHHHHHHHH-HHHHhcC---CcHHHHHHHHHHH
Q 001799 119 NMDHMM----GLFNCYVREYSFVKQQQTAIKMY-KHAGE-----ER-FLLWAVCSI-QLQVLCG---NGGEKLLLLAEGL 183 (1011)
Q Consensus 119 n~el~~----~Lf~ayvr~~d~~~Aqq~a~kL~-K~~P~-----~r-y~~Wai~sl-~Lq~~~~---~~a~klL~LAek~ 183 (1011)
+ |++. +++..+...+.-......+..+. ...|. +. ...|..+.+ .++...+ ++.+..+..+.++
T Consensus 445 ~-El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~ 523 (608)
T PF10345_consen 445 R-ELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKM 523 (608)
T ss_pred h-HHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHH
Confidence 4 4332 44555544443322111122232 23341 22 223322222 1211111 1233344444444
Q ss_pred HHHHHhcCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHhhhc--ccCCChHH-HHH-----HHHHHHHHcCCHHHHHHHH
Q 001799 184 LKKHVASHSLHEP-EALIVYISILEQQSKYGDALEILSGTLG--SLLVIEVD-KLR-----MQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 184 Lekai~~~p~~~~-eel~l~~~IL~~qgk~eEAL~~L~~~l~--~~~~~~~~-~l~-----l~a~ll~klg~~eeA~~~~ 254 (1011)
..+... +. .-. -.+.+++..+. .|...|..+....... ...++... .|. +.+..+...|+.++|....
T Consensus 524 ~~~~~~-n~-~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~ 600 (608)
T PF10345_consen 524 ANNKLG-NS-QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEAR 600 (608)
T ss_pred HHHhhc-cc-hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 411111 11 111 23444444444 6777776666655431 11222222 222 2335567789999999887
Q ss_pred HHHH
Q 001799 255 KKIL 258 (1011)
Q Consensus 255 ~kaL 258 (1011)
.++-
T Consensus 601 ~~~~ 604 (608)
T PF10345_consen 601 QQLD 604 (608)
T ss_pred HHHH
Confidence 7654
No 300
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=77.79 E-value=3.8 Score=45.85 Aligned_cols=79 Identities=9% Similarity=-0.020 Sum_probs=67.8
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHH
Q 001799 81 STLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMG-LFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWA 159 (1011)
Q Consensus 81 ~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~-Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wa 159 (1011)
..|+|+..|......-...+.|.+.-.+|..+++++|.|.++|.. +..-+...++++.+.....+-++.+|++|- .|+
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~-iw~ 180 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR-IWI 180 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch-HHH
Confidence 468999999988888888889999999999999999999998875 556677889999999988889999999886 564
Q ss_pred H
Q 001799 160 V 160 (1011)
Q Consensus 160 i 160 (1011)
.
T Consensus 181 e 181 (435)
T COG5191 181 E 181 (435)
T ss_pred H
Confidence 3
No 301
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.38 E-value=64 Score=35.81 Aligned_cols=168 Identities=11% Similarity=0.090 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH-HHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 001799 28 FKNALKQSTALLAKYPNSPYALALKALVLERMGKCD-ESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLAT 106 (1011)
Q Consensus 28 ~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~d-EAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~ 106 (1011)
..+-+..++.++..+|+|-..+.-+-.+..-+|++. .-++.++.++.. ..++-.+|+-..++.+..+.++.-+
T Consensus 94 L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~------DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 94 LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDD------DAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhc------cccchhhhHHHHHHHHHHhhHHHHH
Confidence 667789999999999999999999999999999888 778888877553 4577899999999999999999988
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC-CcHHHHHHH
Q 001799 107 SCYEYACGKYHNNMDHMMGLFNCYVREYS------FVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCG-NGGEKLLLL 179 (1011)
Q Consensus 107 ~~YekAlk~~P~n~el~~~Lf~ayvr~~d------~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~-~~a~klL~L 179 (1011)
+.-...++.+--|-.++.+-+........ .+.-.+..+...+..|+|.- .|+-+.-+++..++ ....++...
T Consensus 168 ~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeS-aWnYL~G~l~~d~gl~s~s~vv~f 246 (318)
T KOG0530|consen 168 AYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNES-AWNYLKGLLELDSGLSSDSKVVSF 246 (318)
T ss_pred HHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCcc-HHHHHHHHHHhccCCcCCchHHHH
Confidence 88888888877666666543322222111 22334555677788898865 57555545543222 113355555
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 001799 180 AEGLLKKHVASHSLHEPEALIVYISIL 206 (1011)
Q Consensus 180 Aek~Lekai~~~p~~~~eel~l~~~IL 206 (1011)
++.++. ..+...+..+-.+..++
T Consensus 247 ~~~l~~----~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 247 VENLYL----QLPKRSPFLLAFLLDLY 269 (318)
T ss_pred HHHHhh----ccCCCChhHHHHHHHHH
Confidence 555542 12224444444444444
No 302
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=76.78 E-value=7.3 Score=50.52 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=72.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHH----CC---ChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSP---YALALKALVLER----MG---KCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~---~a~aLKA~aL~r----lg---k~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+..+.|++|+..|.++-...|.-. +|.+..|.++.- .| .+++|+..+.. +.. .|.-+--+.--
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~ 558 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY----LHG---GVGAPLEYLGK 558 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH----hcC---CCCCchHHHhH
Confidence 356899999999999999998764 577777777654 22 57777777765 332 34444555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMDHMM 124 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~el~~ 124 (1011)
+.+|.++|+|+|-+++|+-|++.+|+++++-.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 67899999999999999999999999998643
No 303
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=76.42 E-value=13 Score=43.25 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHHHHHhhhhCCCCCCcHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 001799 59 MGKCDESLSVSLQAKDLLYQNDSTLMDDLTL-----STLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVRE 133 (1011)
Q Consensus 59 lgk~dEAl~l~~~alelL~~d~~~P~D~~al-----~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~ 133 (1011)
.|+|..|+++|.++..+-..-...+.|.... ..|..||..+++++.|+..--+.+-.+|...--...-+.+..+.
T Consensus 196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L 275 (569)
T PF15015_consen 196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL 275 (569)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence 3566666666666533211011122332222 24677999999999999998899999998765555555666777
Q ss_pred cCHHHHHHHHHHHH
Q 001799 134 YSFVKQQQTAIKMY 147 (1011)
Q Consensus 134 ~d~~~Aqq~a~kL~ 147 (1011)
.+|.+|-+.||-..
T Consensus 276 eRy~eAarSamia~ 289 (569)
T PF15015_consen 276 ERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999988877654
No 304
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.63 E-value=16 Score=32.96 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=47.8
Q ss_pred chHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHCCChHHHHHHHHH
Q 001799 11 IPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKAL---VLERMGKCDESLSVSLQ 71 (1011)
Q Consensus 11 v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~---aL~rlgk~dEAl~l~~~ 71 (1011)
...+++..-...++..+..+|+..-.++|++.++.+.-....|+ ++...|++.+.++....
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888899999999999999999999988765555444 56668999998876543
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.23 E-value=94 Score=32.60 Aligned_cols=130 Identities=14% Similarity=-0.005 Sum_probs=92.2
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC--CcHHHHH
Q 001799 15 RVRPIWDAIDSRQFKNALKQSTALLAKYPNS--PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL--MDDLTLS 90 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~l~dklLKk~P~~--~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P--~D~~al~ 90 (1011)
.+....+.-..+..++|+..+..+-|..-.+ ..++...|.++.+.|+..+|...+.++- .|.+.| ..+.+..
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia----~dt~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIA----ADTSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHh----ccCCCcchhhHHHHH
Confidence 4556667778889999999988887764433 2355666777888999999999998753 233344 3334455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYA-CGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYK 148 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekA-lk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K 148 (1011)
.-++++...|-|++.....+.. ...+|-...+...|+.+..+.|||.+|.+.+.++..
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 5677888899999877655543 234555555667899999999999999887766654
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.31 E-value=1e+02 Score=31.82 Aligned_cols=66 Identities=9% Similarity=-0.172 Sum_probs=52.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
..+..+-...++.+++..++...--..|++.++..--+..+++.|+|.+|.+....+....|..+|
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~ 79 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY 79 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH
Confidence 334444556678889998898888889999999888889999999999998888777766676664
No 307
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.03 E-value=15 Score=44.95 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=75.0
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001799 53 ALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVR 132 (1011)
Q Consensus 53 A~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr 132 (1011)
|--+++..+|..+++.|...+.....|..+-.-+.....|..||.++.+.|.|.++|+.|-+.+|.++=-....+.+.+.
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 44467788999999999887655433322222233456788899999999999999999999999988666677888888
Q ss_pred hcCHHHHHHHHHHHHHHc
Q 001799 133 EYSFVKQQQTAIKMYKHA 150 (1011)
Q Consensus 133 ~~d~~~Aqq~a~kL~K~~ 150 (1011)
.+.-.+|.+++.++...+
T Consensus 441 E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIKSSE 458 (872)
T ss_pred hcchHHHHHHHHHHHhhh
Confidence 899999988887776544
No 308
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=74.00 E-value=32 Score=38.99 Aligned_cols=115 Identities=13% Similarity=0.013 Sum_probs=71.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
.+.+....|..+-++.+..+|..+|....++++.|.-. .--..+|..+++++ +.....+|+.
T Consensus 191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~A----------------Lka~e~~yr~ 252 (556)
T KOG3807|consen 191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQA----------------LKAGETIYRQ 252 (556)
T ss_pred HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHH----------------HHHHHHHHhh
Confidence 34678899999999999999999999988888777321 11233444444444 3333334443
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHcC
Q 001799 99 LDRLDLATSCYEYACGKYHNNMD-HMMGLFNCYVREYSFVKQQQTAIKMYKHAG 151 (1011)
Q Consensus 99 lg~~~eA~~~YekAlk~~P~n~e-l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P 151 (1011)
.++..--...++...+.+-+-.- +-..++++..+.|+.++|.+....|.|-+|
T Consensus 253 sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 253 SQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 33322222233333444443211 224788888888888888888777777777
No 309
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=73.52 E-value=2.3e+02 Score=34.87 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=88.7
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCH
Q 001799 23 IDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRL 102 (1011)
Q Consensus 23 ld~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~ 102 (1011)
+..|++..+.-+++.++-.-......+.--+.-+...|+.+-|-..+..+.... .|+-+.....-+.+-...|++
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-----~k~~~~i~L~~a~f~e~~~n~ 382 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-----VKKTPIIHLLEARFEESNGNF 382 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-----CCCCcHHHHHHHHHHHhhccH
Confidence 357999999999999988777777777777777778899998887776665542 233344444444455556799
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 001799 103 DLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQ 141 (1011)
Q Consensus 103 ~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq 141 (1011)
+.|...|++.....|+..++-......-.|.|+...+..
T Consensus 383 ~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 383 DDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 999999999999999999988888888888898887764
No 310
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=73.06 E-value=9.8 Score=29.04 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 001799 87 LTLSTLQIVFQRLDRLDLATSC--YEYACGKYHNN 119 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~--YekAlk~~P~n 119 (1011)
+.+..+|..+...|++++|++. |+-+...+|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5677889999999999999999 66888888765
No 311
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.53 E-value=2.7 Score=47.62 Aligned_cols=89 Identities=11% Similarity=-0.013 Sum_probs=62.8
Q ss_pred HHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 001799 56 LERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYS 135 (1011)
Q Consensus 56 L~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d 135 (1011)
.+..|.+++|++.+..++++ .|.....+...+.+|..++++..|+.-|..|+.++|+...-+.--..+....|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 35568888888888887664 566666666778888888888888888888888888865544445566666777
Q ss_pred HHHHHHHHHHHHHHc
Q 001799 136 FVKQQQTAIKMYKHA 150 (1011)
Q Consensus 136 ~~~Aqq~a~kL~K~~ 150 (1011)
|.+|.+-.....++.
T Consensus 198 ~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 198 WEEAAHDLALACKLD 212 (377)
T ss_pred hHHHHHHHHHHHhcc
Confidence 777765544443433
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.95 E-value=16 Score=40.92 Aligned_cols=63 Identities=13% Similarity=0.046 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKH 149 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~ 149 (1011)
.++..+...+...|+++.+++.+++.+..+|-++.++..+..+|.+.|+...|...+.++.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 345556667778889999999999999999999999999999999999999988887777654
No 313
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.24 E-value=11 Score=45.57 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 179 LAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKIL 258 (1011)
Q Consensus 179 LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL 258 (1011)
.|.+-+.++....|.+..--+..+++++..-|-.-+|-.++.+++.. +..++-..+.+|+++..+.+.+.|++.++.++
T Consensus 625 ~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 625 FAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-NSSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred HHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-cccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 33444455555556444446778889999999889999999999864 45566567778999999999999999999999
Q ss_pred HhCCCCHHHHHHHHH
Q 001799 259 ELSPDDWECFLHYLG 273 (1011)
Q Consensus 259 ~~nPDdw~~~~~yl~ 273 (1011)
+++|++..+-..+..
T Consensus 704 ~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 704 KLTTKCPECENSLKL 718 (886)
T ss_pred hcCCCChhhHHHHHH
Confidence 999999888776653
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.12 E-value=32 Score=34.92 Aligned_cols=79 Identities=16% Similarity=0.074 Sum_probs=52.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR 98 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~ 98 (1011)
+..++..+....+..+++.+--..|+.+..-..-+.++.+.|+++||+.+++.+.+ ..+.-+-+--+++.|+..
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~------~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLS------SAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhc------cCCCchHHHHHHHHHHHh
Confidence 34455677777777777777666787777777777788888888888777776422 123334555566667766
Q ss_pred cCCHH
Q 001799 99 LDRLD 103 (1011)
Q Consensus 99 lg~~~ 103 (1011)
+|+.+
T Consensus 91 l~Dp~ 95 (153)
T TIGR02561 91 KGDAE 95 (153)
T ss_pred cCChH
Confidence 66643
No 315
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=97 Score=37.99 Aligned_cols=117 Identities=11% Similarity=0.030 Sum_probs=82.5
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKN-ALKQSTALLAKYPNSPYALAL--KALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 16 l~~I~dald~gn~Kq-AL~l~dklLKk~P~~~~a~aL--KA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~L 92 (1011)
+....+.+..++.+. |+..+..-+..+|.++..... .+..+..++....+......++.. .|.+..+..+|
T Consensus 34 ~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~L 107 (620)
T COG3914 34 LAIVLEWLNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV------NPENCPAVQNL 107 (620)
T ss_pred HHHHHHHhcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc------CcccchHHHHH
Confidence 334455566666666 565656666778888876433 466667788886666665555332 57888999999
Q ss_pred HHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 001799 93 QIVFQRLDRLDLATSCYEY-ACGKYHNNMDHMMGLFNCYVREYSFVKQ 139 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~Yek-Alk~~P~n~el~~~Lf~ayvr~~d~~~A 139 (1011)
+..+...|....+...+.. +.+..|+|.+...+++..|- .+++.++
T Consensus 108 ~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~ 154 (620)
T COG3914 108 AAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRYLKL 154 (620)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHHHHH
Confidence 9988888887777666655 88899999998888877766 5655544
No 316
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=70.91 E-value=16 Score=40.48 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=31.5
Q ss_pred HHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 001799 56 LERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMD 121 (1011)
Q Consensus 56 L~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~e 121 (1011)
+.+.++.+.|+...+..+.+ .|.|+.-+.--|.+|..+|.+.-|++-++..+...|+++.
T Consensus 191 ~~~e~~~~~al~~~~r~l~l------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 191 LLRELQWELALRVAERLLDL------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHhhchHHHHHHHHHHHhh------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 33445555555555554443 3445555555555555555555555555555555555443
No 317
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.03 E-value=11 Score=26.51 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 001799 245 GDYTAAAQIYKKILELSPDDWECFLHYLGC 274 (1011)
Q Consensus 245 g~~eeA~~~~~kaL~~nPDdw~~~~~yl~a 274 (1011)
|+++.|..+|++++...|.+...|..|+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567899999999999999999999988764
No 318
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.33 E-value=1.2e+02 Score=32.53 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=47.6
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccC---CChHHHHHHHHHHHHHcCCHHHHHH
Q 001799 189 ASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLL---VIEVDKLRMQGRLLARQGDYTAAAQ 252 (1011)
Q Consensus 189 ~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~---~~~~~~l~l~a~ll~klg~~eeA~~ 252 (1011)
....+++++-.+.++..|. ..+.++|+.++-.++.... ..+++++.-++.++.++|+++.|.-
T Consensus 134 ~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 134 GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3445678887777887777 5577999999998874322 2357888888999999999998863
No 319
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.14 E-value=10 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 001799 100 DRLDLATSCYEYACGKYHNNMDHMMGLFN 128 (1011)
Q Consensus 100 g~~~eA~~~YekAlk~~P~n~el~~~Lf~ 128 (1011)
|+.+.|..+|+++++..|.+.+++..+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45778889999999999988888776554
No 320
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=67.65 E-value=2.3e+02 Score=32.33 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=49.9
Q ss_pred CchHhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Q 001799 10 GIPERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSL 70 (1011)
Q Consensus 10 ~v~eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~ 70 (1011)
++...++..+.+.+.++++...++.+++.+..+|--.....+-+.++.++|. +++...+.
T Consensus 97 ~p~ad~~~~~~~~~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~ 156 (301)
T TIGR03362 97 PPPADRVADYQELLAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIR 156 (301)
T ss_pred CCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 3556777888889999999999999999999999888899999999999995 45444433
No 321
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.43 E-value=20 Score=32.37 Aligned_cols=49 Identities=12% Similarity=0.051 Sum_probs=35.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHhcCHHHHHHHHH
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMM---GLFNCYVREYSFVKQQQTAI 144 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~---~Lf~ayvr~~d~~~Aqq~a~ 144 (1011)
+...++.++|+..|++|+++.++.++-.. .+.++|...|+|.++.+.+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33667788899999999999888776433 45577888888877766443
No 322
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=67.26 E-value=1.9e+02 Score=34.51 Aligned_cols=81 Identities=16% Similarity=0.077 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q 001799 177 LLLAEGLLKKHVASHSLHEPEALIVYISI--LEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIY 254 (1011)
Q Consensus 177 L~LAek~Lekai~~~p~~~~eel~l~~~I--L~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~ 254 (1011)
+..|.+..-|+-+ .|+... .++.++-. +..+|++.-|-.+++-.+.. .++.+...+-.-..+...|+-+.|..++
T Consensus 413 l~aaR~~F~k~rk-~~~~~h-~vyi~~A~~E~~~~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 413 LEAARKLFIKLRK-EGIVGH-HVYIYCAFIEYYATGDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHHhc-cCCCCc-ceeeeHHHHHHHhcCCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4556666655444 334433 33444333 33578999999999988754 6766543333336677889999999999
Q ss_pred HHHHHh
Q 001799 255 KKILEL 260 (1011)
Q Consensus 255 ~kaL~~ 260 (1011)
++.++.
T Consensus 490 etsv~r 495 (660)
T COG5107 490 ETSVER 495 (660)
T ss_pred HHhHHH
Confidence 988764
No 323
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.80 E-value=2.1e+02 Score=31.78 Aligned_cols=197 Identities=13% Similarity=0.004 Sum_probs=101.2
Q ss_pred HHHHcC-CHHHHHHHHHHHHHh-------CCCCHHHH-------HHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCc
Q 001799 21 DAIDSR-QFKNALKQSTALLAK-------YPNSPYAL-------ALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMD 85 (1011)
Q Consensus 21 dald~g-n~KqAL~l~dklLKk-------~P~~~~a~-------aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D 85 (1011)
+.+..+ ++..|....+++... .+.++.+. ...+.++...+.++.. .-|.++++.+.. ..|+.
T Consensus 44 ~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~-~ka~~~l~~l~~--e~~~~ 120 (278)
T PF08631_consen 44 SLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESV-EKALNALRLLES--EYGNK 120 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHHHHHHH--hCCCC
Confidence 677888 999998877777655 22333332 2333344455555433 335555555543 35655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHcCCcHHHHHHH
Q 001799 86 DLTLSTLQIVFQRLDRLDLATSCYEYACGKYH---NNMDHMMGLFNCYVREYSFVKQQQTAIKMY--KHAGEERFLLWAV 160 (1011)
Q Consensus 86 ~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P---~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~--K~~P~~ry~~Wai 160 (1011)
+....+--.++...++.+++.+.+.+++.--+ .+.+...+....... .+...+......++ +..|.... |..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~--~~e 197 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQ--WLE 197 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhH--HHH
Confidence 66653333344448889999999999998655 233333333222232 34455555555555 33444322 432
Q ss_pred HH---HHHHHhcCC--cHHHHHHHHHHHHHHHH--hcCCCCCHH------HHHHHHHHHHHcCChHHHHHHHHhhh
Q 001799 161 CS---IQLQVLCGN--GGEKLLLLAEGLLKKHV--ASHSLHEPE------ALIVYISILEQQSKYGDALEILSGTL 223 (1011)
Q Consensus 161 ~s---l~Lq~~~~~--~a~klL~LAek~Lekai--~~~p~~~~e------el~l~~~IL~~qgk~eEAL~~L~~~l 223 (1011)
.. .++...... .....+.....+++... ...++.... -+...+.-..++++|++|+++++-.+
T Consensus 198 ~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 198 KLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 222112211 11112332333333211 123322221 22334677788999999999998654
No 324
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.64 E-value=18 Score=44.80 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=100.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH---CCChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSP------YALALKALVLER---MGKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~dklLKk~P~~~------~a~aLKA~aL~r---lgk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
...+=|..+|..-+++++.+-+ -|+.- -..+.-|.++.| .|+.+.|+...-..++. ..|--++.+
T Consensus 208 mlSyRDvQdY~amirLVe~Lk~-iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~-----eg~vapDm~ 281 (1226)
T KOG4279|consen 208 MLSYRDVQDYDAMIRLVEDLKR-IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEK-----EGPVAPDMY 281 (1226)
T ss_pred HhhhccccchHHHHHHHHHHHh-CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHh-----cCCCCCcee
Confidence 3455577899999999988644 47432 122334555655 57888888877665442 345556777
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHcCC----
Q 001799 90 STLQIVFQRL---------DRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREY----SFVKQQQTAIKMYKHAGE---- 152 (1011)
Q Consensus 90 ~~Lg~~~~~l---------g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~----d~~~Aqq~a~kL~K~~P~---- 152 (1011)
-+.|.+|..+ +..+.|++-|++|....|.- -...+++...+..| +-.+.|+++|+|-.+-..
T Consensus 282 Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~-~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~l 360 (1226)
T KOG4279|consen 282 CLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLE-YSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGAL 360 (1226)
T ss_pred eeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchh-hccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchH
Confidence 7788887653 34456889999999999973 33345555555544 456788999988765443
Q ss_pred -cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 001799 153 -ERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLK 185 (1011)
Q Consensus 153 -~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Le 185 (1011)
.-.+||-+...+--..-.++..++...|+.|.+
T Consensus 361 eklq~YWdV~~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 361 EKLQEYWDVATYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred HHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhc
Confidence 224578665433211122345566666666653
No 325
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=65.84 E-value=41 Score=32.46 Aligned_cols=23 Identities=17% Similarity=-0.000 Sum_probs=19.2
Q ss_pred HHHHHHHCCChHHHHHHHHHHHH
Q 001799 52 KALVLERMGKCDESLSVSLQAKD 74 (1011)
Q Consensus 52 KA~aL~rlgk~dEAl~l~~~ale 74 (1011)
+|.-+++.|+.-+|+++.+..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHH
Confidence 56778899999999999988754
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=64.75 E-value=49 Score=35.67 Aligned_cols=63 Identities=11% Similarity=-0.003 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCCC-----C-HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001799 86 DLTLSTLQIVFQRLDRLD-------LATSCYEYACGKYHN-----N-MDHMMGLFNCYVREYSFVKQQQTAIKMYK 148 (1011)
Q Consensus 86 ~~al~~Lg~~~~~lg~~~-------eA~~~YekAlk~~P~-----n-~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K 148 (1011)
...+..++|+|+..|+.+ .|...|++|...... + ..+.+.++..+.|.|++++|.+.+.++..
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 345667899999999855 466667777765432 1 34667889999999999999887665553
No 327
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.31 E-value=1e+02 Score=36.14 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=48.3
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCChHHHHHHHHHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPY----ALALKALVLERMGKCDESLSVSLQAKD 74 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~----a~aLKA~aL~rlgk~dEAl~l~~~ale 74 (1011)
+|.++.+..+++.++|..|.+.++.+..+-|.... ....+|+-+.-.-++++|.+.++....
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56788999999999999999999999987454443 333455556678899999999887643
No 328
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=63.11 E-value=1.5e+02 Score=28.90 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=69.2
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHH
Q 001799 18 PIWDAID-SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVF 96 (1011)
Q Consensus 18 ~I~dald-~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~ 96 (1011)
.+...+. .+..+..+.+.+.+++.++.++........++.+.+ ..+.+..+.. . ...-|.+ ....+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~--~~~yd~~---~~~~~c 79 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------K--SNHYDIE---KVGKLC 79 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------c--cccCCHH---HHHHHH
Confidence 3444444 689999999999999998888877777777776553 3444444331 0 1122222 233444
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q 001799 97 QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVRE-YSFVKQQQTAIKMYKHAGEERFLLWAVCSI 163 (1011)
Q Consensus 97 ~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~-~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl 163 (1011)
.+.+.++++.-+|.+. ....+ ....++.. ++++.|.+.+.+ ++++. .|..+..
T Consensus 80 ~~~~l~~~~~~l~~k~----~~~~~----Al~~~l~~~~d~~~a~~~~~~-----~~~~~-lw~~~~~ 133 (140)
T smart00299 80 EKAKLYEEAVELYKKD----GNFKD----AIVTLIEHLGNYEKAIEYFVK-----QNNPE-LWAEVLK 133 (140)
T ss_pred HHcCcHHHHHHHHHhh----cCHHH----HHHHHHHcccCHHHHHHHHHh-----CCCHH-HHHHHHH
Confidence 6667777777777542 33222 33444444 777777665443 33444 5644443
No 329
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.48 E-value=3.8e+02 Score=33.14 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=72.4
Q ss_pred HcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCC-----ChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH
Q 001799 24 DSRQFKNALKQSTALLA-------KYPNSPYALALKALVLERMG-----KCDESLSVSLQAKDLLYQNDSTLMDDLTLST 91 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLK-------k~P~~~~a~aLKA~aL~rlg-----k~dEAl~l~~~alelL~~d~~~P~D~~al~~ 91 (1011)
..+|..+|+..+..+.+ +. ++.+..-.|.++.+-. +.+.|+.++.++.+. +++++...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~ 330 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYL 330 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHH
Confidence 34688888888888766 32 4556667777777743 566788888877543 45678888
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----cCHHHHHHHHHHHH
Q 001799 92 LQIVFQRLD---RLDLATSCYEYACGKYHNNMDHMMGLFNCYVRE----YSFVKQQQTAIKMY 147 (1011)
Q Consensus 92 Lg~~~~~lg---~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~----~d~~~Aqq~a~kL~ 147 (1011)
+|.+|..-. ++..|.++|..|.+.. +.++.+.++.+|..- .+...|...+.+..
T Consensus 331 lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 331 LGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred HHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 888876544 4567888888876543 345666777666543 24455555444444
No 330
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.19 E-value=33 Score=39.10 Aligned_cols=62 Identities=10% Similarity=-0.046 Sum_probs=32.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYHNNMD----HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 93 g~~~~~lg~~~eA~~~YekAlk~~P~n~e----l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
|.-|...++|..|+..|.+.++..-.|++ ++.+-+.+..-.|+|..+..-+.+..+..|.+.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 44455555666666666666654333222 223444445555566666555555556666554
No 331
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=62.12 E-value=39 Score=33.85 Aligned_cols=37 Identities=16% Similarity=0.036 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 001799 86 DLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDH 122 (1011)
Q Consensus 86 ~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el 122 (1011)
-+.++.|+.-+.++++|+++..+....+..+|+|.++
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3455555555555666666666555555566655543
No 332
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=62.03 E-value=17 Score=36.83 Aligned_cols=48 Identities=27% Similarity=0.382 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCD 63 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~d 63 (1011)
+-..+=++..|+|..|++.++.+....|..++.+++++.+|+-+|+.+
T Consensus 48 ~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 48 MFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred hhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 345566789999999999999999998999999999999999999864
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=60.89 E-value=20 Score=26.85 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 234 LRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 234 l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
+..+|.+|...|++++|..+++++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 455778888888888888888888874
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.47 E-value=37 Score=36.54 Aligned_cols=64 Identities=16% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhhh----hCC---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 53 ALVLERMGKCDESLSVSLQAKDLLY----QND---STLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKY 116 (1011)
Q Consensus 53 A~aL~rlgk~dEAl~l~~~alelL~----~d~---~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~ 116 (1011)
|.++--.|+.+.....+++|++... .+. ..-++...++++|.+.+.+|++++|...|.+++...
T Consensus 125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444446775555555555544222 110 112345678899999999999999999999998643
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.45 E-value=1.3e+02 Score=32.20 Aligned_cols=72 Identities=14% Similarity=0.038 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCHH
Q 001799 62 CDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHN----NMDHMMGLFNCYVREYSFV 137 (1011)
Q Consensus 62 ~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~----n~el~~~Lf~ayvr~~d~~ 137 (1011)
-++|+..+.++ . +.+.-.+++....|+..|. ..+.++++.+|-+++...+. |+++...|+..|...++++
T Consensus 122 d~~A~~~fL~~----E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 122 DQEALRRFLQL----E-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred cHHHHHHHHHH----c-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 45666655442 1 1123467777778877776 55678888888888876543 4677788888888888777
Q ss_pred HH
Q 001799 138 KQ 139 (1011)
Q Consensus 138 ~A 139 (1011)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 65
No 336
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=59.34 E-value=1.2e+02 Score=35.69 Aligned_cols=86 Identities=22% Similarity=0.118 Sum_probs=59.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHh----CCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 21 DAIDSRQFKNALKQSTALLAK----YPNSPY-------ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk----~P~~~~-------a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
=+...|+|+.|+.+|.|.-.. +|.... ..--...+|.++++++-|+....+.+.+ +|....-+
T Consensus 192 ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l------nP~~frnH 265 (569)
T PF15015_consen 192 YAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL------NPSYFRNH 265 (569)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc------CcchhhHH
Confidence 344556677778888775332 222221 2234567889999999999888777554 57777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYA 112 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekA 112 (1011)
.-.+.|++.+.||.+|....--|
T Consensus 266 LrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 266 LRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999987765433
No 337
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=58.53 E-value=4.1e+02 Score=33.21 Aligned_cols=86 Identities=21% Similarity=0.139 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALA------------LKALVLERMGKCDESLSVSLQAKDLLYQNDSTL 83 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~a------------LKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P 83 (1011)
-.+.|++|+.|.|++|.+.+---+- .++-..++ .||++-.|--++-+-+-.+++ .+++...|
T Consensus 560 ~~~m~q~Ieag~f~ea~~iaclgVv--~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~----~k~rge~P 633 (1081)
T KOG1538|consen 560 SAPMYQYIERGLFKEAYQIACLGVT--DTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEE----RKKRGETP 633 (1081)
T ss_pred cccchhhhhccchhhhhccccccee--cchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHH----HHhcCCCc
Confidence 4578899999999999764322211 12323333 344444443333332222221 12333446
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 84 MDDLTLSTLQIVFQRLDRLDLATSCYEY 111 (1011)
Q Consensus 84 ~D~~al~~Lg~~~~~lg~~~eA~~~Yek 111 (1011)
++. +++.++.-.|++.||.++|.+
T Consensus 634 ~~i----LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 634 NDL----LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHH----HHHHHHHhhhhHHHHHHHHHH
Confidence 432 467777888999999988854
No 338
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.47 E-value=30 Score=37.34 Aligned_cols=58 Identities=9% Similarity=-0.093 Sum_probs=44.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCc
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE 153 (1011)
Q Consensus 96 ~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ 153 (1011)
+...++.++|+..-+.-+|.+|.+.....-+|+.+.-.|+|.+|+....-+-...|+.
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4456778888888888888889888888888888888899988877655555555553
No 339
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=56.92 E-value=21 Score=40.15 Aligned_cols=83 Identities=7% Similarity=-0.002 Sum_probs=63.5
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 41 KYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLST-LQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 41 k~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~-Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
+.|+++-.++.-+.-..+.|-+.+--.+|.+++.. .|.|.+.|.. ...=|...++.+.+.++|.++++.+|++
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k------hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK------HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 35777766665555455566677777788777543 7999999875 4556777889999999999999999999
Q ss_pred HHHHHHHHHH
Q 001799 120 MDHMMGLFNC 129 (1011)
Q Consensus 120 ~el~~~Lf~a 129 (1011)
+.+|...|..
T Consensus 176 p~iw~eyfr~ 185 (435)
T COG5191 176 PRIWIEYFRM 185 (435)
T ss_pred chHHHHHHHH
Confidence 9998877744
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.69 E-value=1.5e+02 Score=35.74 Aligned_cols=105 Identities=22% Similarity=0.224 Sum_probs=67.9
Q ss_pred chHhhHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 11 IPERRVRPIWDAIDS-RQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 11 v~eRrl~~I~dald~-gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
+++..-..+-.+++. |-++.|++.+ +++..+ =.+..++|+.+.|.+++++ ..++..|
T Consensus 293 i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~r---FeLAl~lg~L~~A~~~a~~-----------~~~~~~W 350 (443)
T PF04053_consen 293 IPKDQGQSIARFLEKKGYPELALQFV--------TDPDHR---FELALQLGNLDIALEIAKE-----------LDDPEKW 350 (443)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHH---HHHHHHCT-HHHHHHHCCC-----------CSTHHHH
T ss_pred CChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHH---hHHHHhcCCHHHHHHHHHh-----------cCcHHHH
Confidence 333334445555554 4444555543 233333 3445789999999998642 3578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIK 145 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~k 145 (1011)
..||......|+++-|.++|+++ +|. ..+...|.-.|+-++..+.+..
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~-----~d~---~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKA-----KDF---SGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHC-----T-H---HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhh-----cCc---cccHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999875 222 3677788888998877776543
No 341
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.17 E-value=4.4e+02 Score=31.93 Aligned_cols=198 Identities=15% Similarity=0.066 Sum_probs=113.0
Q ss_pred CChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH--------HHHHcCCHHHHHHHHHH---HHHhCCCC-------HH
Q 001799 60 GKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI--------VFQRLDRLDLATSCYEY---ACGKYHNN-------MD 121 (1011)
Q Consensus 60 gk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~--------~~~~lg~~~eA~~~Yek---Alk~~P~n-------~e 121 (1011)
|-+++|.++-++++....+-+..|.+...+..+-. |-.-.|++.+|++.... .+...|.- ..
T Consensus 289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ 368 (629)
T KOG2300|consen 289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ 368 (629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence 56777887777776543322222334444444333 34457999998876544 44567761 22
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCC----
Q 001799 122 HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER---FLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLH---- 194 (1011)
Q Consensus 122 l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r---y~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~---- 194 (1011)
+.+-++.-+...+.|+.|...+....|...... +...+....|+. .+ ..+.+ ++.++..-..+.+.
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~--~~-~~ed~----y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLR--IG-DAEDL----YKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH--hc-cHHHH----HHHHHhcCCCCCCcchHH
Confidence 344556666677888888877776666544322 111122223332 11 11112 22222211111111
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh---H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC
Q 001799 195 --EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE---V--DKLRMQGRLLARQGDYTAAAQIYKKILEL---SPDD 264 (1011)
Q Consensus 195 --~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~---~--~~l~l~a~ll~klg~~eeA~~~~~kaL~~---nPDd 264 (1011)
....+++++-....++++.||..++.+.+.-..-.+ . -.+.+++.+..-.|+..++.+..+-++.. -||-
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di 521 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDI 521 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCc
Confidence 123677888888999999999999998874211111 1 12455677778899999999998888864 4663
No 342
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.97 E-value=1.8e+02 Score=28.52 Aligned_cols=106 Identities=16% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCC
Q 001799 151 GEERFLLWAVCSIQLQVLCGN--GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLV 228 (1011)
Q Consensus 151 P~~ry~~Wai~sl~Lq~~~~~--~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~ 228 (1011)
.++|-..|.-....++...+. ....+.++.++.+.+......+.+..-.+.+-..+...- .++.++++-.....+.
T Consensus 18 ~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~--~~~~~if~~l~~~~IG 95 (126)
T PF08311_consen 18 GDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS--SDPREIFKFLYSKGIG 95 (126)
T ss_dssp SS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB--SHHHHHHHHHHHHTTS
T ss_pred CCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc--cCHHHHHHHHHHcCcc
Confidence 445544554433333323222 234566677777776555444555443333333333322 2565665544332233
Q ss_pred C-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 229 I-EVDKLRMQGRLLARQGDYTAAAQIYKKIL 258 (1011)
Q Consensus 229 ~-~~~~l~l~a~ll~klg~~eeA~~~~~kaL 258 (1011)
. -...+...|..+...|++++|.++|+..|
T Consensus 96 ~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 96 TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3 34455667899999999999999998875
No 343
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=54.66 E-value=31 Score=40.87 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhh
Q 001799 196 PEALIVYISILEQQSKYGDALEILSGT 222 (1011)
Q Consensus 196 ~eel~l~~~IL~~qgk~eEAL~~L~~~ 222 (1011)
+.-+.++..|.+..|.|+.++..+..+
T Consensus 323 p~~i~l~~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 323 PVLIQLRSVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred chhhHHHHHHHHHhhhHHHHHHHhhch
Confidence 344444445555555555555444443
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.36 E-value=5.1e+02 Score=32.05 Aligned_cols=218 Identities=16% Similarity=0.070 Sum_probs=117.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH----c
Q 001799 27 QFKNALKQSTALLAKYPNSPYALALKALVLERMG---KCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR----L 99 (1011)
Q Consensus 27 n~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlg---k~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~----l 99 (1011)
+++.|+.++.++-+. +++.+.++.|.++..-. +...|..++..|.. -.+..+...++.+|.. .
T Consensus 308 d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--------~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--------AGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred cHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhCCCcC
Confidence 889999999998876 56677788888877654 56799999998744 2678899999998865 2
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh---cCCcHHHH
Q 001799 100 DRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVL---CGNGGEKL 176 (1011)
Q Consensus 100 g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~---~~~~a~kl 176 (1011)
.+...|...|.+|..+++-........+..+.. +++..+.-....+...--+.+. .-+.. +..+.. ..+....-
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q-~~a~~-l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQ-SNAAY-LLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHh-hHHHH-HHHhccccccccccccc
Confidence 367789999999999883222233344444433 4443332111111100000000 00000 000000 00000001
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHc---CCHHH
Q 001799 177 LLLAEGLLKKHVASHSLHEPEALIVYISILEQQ----SKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQ---GDYTA 249 (1011)
Q Consensus 177 L~LAek~Lekai~~~p~~~~eel~l~~~IL~~q----gk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~kl---g~~ee 249 (1011)
...+.....++... -+..+...++..+..- .+++.|...+..+..+ . ....+..|.++..- .++..
T Consensus 455 ~~~~~~~~~~a~~~---g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~--~--~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQ---GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ--G--AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred hhHHHHHHHHHHhc---cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh--h--hHHHhhhhhHHhcCcCcchhHH
Confidence 11222222221111 2445555555555533 2467777777766422 2 44455666666651 22678
Q ss_pred HHHHHHHHHHhCCCC
Q 001799 250 AAQIYKKILELSPDD 264 (1011)
Q Consensus 250 A~~~~~kaL~~nPDd 264 (1011)
|.++|.++.+.+.+.
T Consensus 528 a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 528 AKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHHhcCchh
Confidence 888888887766543
No 345
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=54.32 E-value=15 Score=25.54 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 001799 88 TLSTLQIVFQRLDRLDLATSCYE 110 (1011)
Q Consensus 88 al~~Lg~~~~~lg~~~eA~~~Ye 110 (1011)
+...++.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555555443
No 346
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=54.08 E-value=3.6e+02 Score=32.42 Aligned_cols=133 Identities=11% Similarity=-0.058 Sum_probs=77.5
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH--------HHHHHHHhhhhCCCCCCcH
Q 001799 16 VRPIWDAIDSRQ-FKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLS--------VSLQAKDLLYQNDSTLMDD 86 (1011)
Q Consensus 16 l~~I~dald~gn-~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~--------l~~~alelL~~d~~~P~D~ 86 (1011)
++.+-++...|+ -.+|+.+...+++-.|.+-... ....++--..+.+|+. .+...++-..-.+....|.
T Consensus 383 ~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~--n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ 460 (549)
T PF07079_consen 383 VFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECE--NIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEE 460 (549)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHH
Confidence 344456667776 7888999988888877664211 1111111111222221 0111111111112234556
Q ss_pred HHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcH
Q 001799 87 LTLSTLQI--VFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEER 154 (1011)
Q Consensus 87 ~al~~Lg~--~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~r 154 (1011)
+.-+.|+. .+...|+|.++.-.-.-..+..| ++.+++.++.+.+...+|.+|-.. +.+..|+++
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~---l~~LP~n~~ 526 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY---LQKLPPNER 526 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH---HHhCCCchh
Confidence 65555554 46778999998765555667889 588999999999999999988764 444555544
No 347
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=52.24 E-value=61 Score=38.49 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQ 71 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~ 71 (1011)
+.+..=.+..|+|.++.-.+.=+.+..| ++.++-+.|.++.-..+++||...+..
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3344445678888888888888888888 788888888888888888888887764
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=51.77 E-value=17 Score=25.28 Aligned_cols=24 Identities=25% Similarity=0.026 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHH
Q 001799 47 YALALKALVLERMGKCDESLSVSL 70 (1011)
Q Consensus 47 ~a~aLKA~aL~rlgk~dEAl~l~~ 70 (1011)
.+....|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467788999999999999998764
No 349
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=51.15 E-value=3e+02 Score=36.32 Aligned_cols=212 Identities=15% Similarity=0.118 Sum_probs=109.8
Q ss_pred CCchHhh--HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHH-HHHHHHHHHCCChHHHHHHHHHHHHhhhhCC
Q 001799 9 GGIPERR--VRPIWDAIDSRQFKNALKQSTALLAKYP-----NSPYAL-ALKALVLERMGKCDESLSVSLQAKDLLYQND 80 (1011)
Q Consensus 9 ~~v~eRr--l~~I~dald~gn~KqAL~l~dklLKk~P-----~~~~a~-aLKA~aL~rlgk~dEAl~l~~~alelL~~d~ 80 (1011)
.+|.-|. +..|-+++++++|++|...|.+- +.+- .+|... ..-....-+.++.+ -+.++-.. |.
T Consensus 689 EtI~PR~LVL~~ir~~Ld~~~Y~~Af~~~Rkh-RIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~-~lnLFls~---L~--- 760 (928)
T PF04762_consen 689 ETIYPRALVLAGIRKLLDAKDYKEAFELCRKH-RIDLNLLYDHNPEQFLENIELFVEQIKDVD-YLNLFLSS---LR--- 760 (928)
T ss_pred hhhccHhHHHHHHHHHHhhccHHHHHHHHHHh-ccccceEEECCHHHHHHHHHHHHHhcCCHH-HHHHHHHh---cc---
Confidence 5566676 67888999999999999998873 2222 223222 12222233344432 22332221 21
Q ss_pred CCCCcHHHH-HHHHHHH---------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--CHHHHHHH
Q 001799 81 STLMDDLTL-STLQIVF---------------QRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREY--SFVKQQQT 142 (1011)
Q Consensus 81 ~~P~D~~al-~~Lg~~~---------------~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~--d~~~Aqq~ 142 (1011)
+.++- ..+...+ ...++.+..+.....++...++..........+|++.. +++.|.+.
T Consensus 761 ----~EDvt~tmY~~~~~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~ 836 (928)
T PF04762_consen 761 ----NEDVTKTMYKDTYPPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQL 836 (928)
T ss_pred ----cccccccccccccccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHH
Confidence 11111 1111111 22334456667777777544444556678888999888 77777666
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 001799 143 AIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGT 222 (1011)
Q Consensus 143 a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~ 222 (1011)
..++.+..+..... ..-..+++ -+..++++.|..+.+ -+- .+.-.-..|.+..|=+-+|++.
T Consensus 837 I~~l~~~~~~~ae~-alkyl~fL-----vDvn~Ly~~ALG~YD----------l~L--al~VAq~SQkDPKEYLPfL~~L 898 (928)
T PF04762_consen 837 IKELREEDPESAEE-ALKYLCFL-----VDVNKLYDVALGTYD----------LEL--ALMVAQQSQKDPKEYLPFLQEL 898 (928)
T ss_pred HHHHHhcChHHHHH-HHhHheee-----ccHHHHHHHHhhhcC----------HHH--HHHHHHHhccChHHHHHHHHHH
Confidence 55555443322110 00000111 123455666655541 111 1111223466778888888776
Q ss_pred hcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 223 LGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKK 256 (1011)
Q Consensus 223 l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~k 256 (1011)
-. .+. .+.+-.+=..+++|+.|+..+.+
T Consensus 899 ~~--l~~----~~rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 899 QK--LPP----LYRRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred Hh--CCh----hheeeeHhhhhCCHHHHHHHHHh
Confidence 32 222 12233456678999999887654
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=50.98 E-value=51 Score=37.06 Aligned_cols=59 Identities=8% Similarity=-0.046 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
+...+..|.+.|.+.+|+.+-+++++.+|=+++.+..+...+...||--.+.+.+.++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44455677888888888888888888888888888888888888888655555554443
No 351
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.79 E-value=1.2e+02 Score=33.28 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNN------MDHMMGLFNCYVREYSFVKQQQTAIKM 146 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n------~el~~~Lf~ayvr~~d~~~Aqq~a~kL 146 (1011)
.+|..|...|++++|.+.|+.+...+-+. .+++..+..++.+.||.+.......+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45566666677777777776665543321 223345556666666666655554444
No 352
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=50.47 E-value=2.8e+02 Score=28.88 Aligned_cols=62 Identities=13% Similarity=0.130 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN---MDHMMGLFNCYVREYSFVKQQQTAIKMYK 148 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n---~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K 148 (1011)
.++..+|..|...|+.++|.+.|.++....... .++...+....+..+||...++...++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455667777777777777777777766544332 33555666777777777777665555443
No 353
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=49.72 E-value=1.1e+02 Score=35.45 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQ 71 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~ 71 (1011)
.+..-+|+-.++..+++.|.|...+.+...+|..+|-.+.|...+..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34556678888888999999999999999999999999999888864
No 354
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=49.71 E-value=3.8e+02 Score=29.26 Aligned_cols=49 Identities=20% Similarity=0.142 Sum_probs=28.1
Q ss_pred hHHHHHHHHhhhcccCCChHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Q 001799 212 YGDALEILSGTLGSLLVIEVDKLRMQG-RLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 212 ~eEAL~~L~~~l~~~~~~~~~~l~l~a-~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
|++|+++....+....|.........+ .+|...|+.++|.+..++++..
T Consensus 149 Y~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 149 YEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 455555555543221222333222233 4556799999999999998874
No 355
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=48.05 E-value=83 Score=32.78 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHH
Q 001799 125 GLFNCYVREYSFVKQQQTAIKMYK 148 (1011)
Q Consensus 125 ~Lf~ayvr~~d~~~Aqq~a~kL~K 148 (1011)
.++..|.+.||+..|.+.+.++..
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhh
Confidence 566666666666666666555443
No 356
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=47.58 E-value=4.2e+02 Score=29.16 Aligned_cols=95 Identities=20% Similarity=0.070 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhhhhCCCCCCc-HHHHHHHHHHHHHc-
Q 001799 26 RQFKNALKQSTALLAKYPNSPYALALKALVLER----MGKCDESLSVSLQAKDLLYQNDSTLMD-DLTLSTLQIVFQRL- 99 (1011)
Q Consensus 26 gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~r----lgk~dEAl~l~~~alelL~~d~~~P~D-~~al~~Lg~~~~~l- 99 (1011)
++.++|+..+.+... ..++.+....|..+.. ..+..+|...+.++.+. ...+ ..+...++.+|..-
T Consensus 91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~------g~~~a~~~~~~l~~~~~~g~ 162 (292)
T COG0790 91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL------GNVEAALAMYRLGLAYLSGL 162 (292)
T ss_pred ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc------CChhHHHHHHHHHHHHHcCh
Confidence 345556665553332 3555555555555554 45666666666665443 1111 12255555555442
Q ss_pred ---C-CHH--HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001799 100 ---D-RLD--LATSCYEYACGKYHNNMDHMMGLFNCY 130 (1011)
Q Consensus 100 ---g-~~~--eA~~~YekAlk~~P~n~el~~~Lf~ay 130 (1011)
+ .++ .|...|++|.... +.+....++..|
T Consensus 163 ~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y 197 (292)
T COG0790 163 QALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY 197 (292)
T ss_pred hhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 2 222 4555565555443 333444444444
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.69 E-value=2.4e+02 Score=31.26 Aligned_cols=103 Identities=12% Similarity=0.160 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 001799 25 SRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDL 104 (1011)
Q Consensus 25 ~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~e 104 (1011)
+++|.+|+.++-. =|.++.+.|+..-|.+++.-.++.+.+. ..|.|......+..++...+.-+.
T Consensus 3 ~kky~eAidLL~~--------------Ga~~ll~~~Q~~sg~DL~~lliev~~~~-~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 3 QKKYDEAIDLLYS--------------GALILLKHGQYGSGADLALLLIEVYEKS-EDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp TT-HHHHHHHHHH--------------HHHHHHHTT-HHHHHHHHHHHHHHHHHT-T---SHHHHHHHHHHHHHS-TT-T
T ss_pred cccHHHHHHHHHH--------------HHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCcc
Confidence 4566666655544 3455777888888888777666655443 345667777888888888765442
Q ss_pred -HHHHHHHHHHh-----CC-CCHHHHHHHHHHHHHhcCHHHHHHH
Q 001799 105 -ATSCYEYACGK-----YH-NNMDHMMGLFNCYVREYSFVKQQQT 142 (1011)
Q Consensus 105 -A~~~YekAlk~-----~P-~n~el~~~Lf~ayvr~~d~~~Aqq~ 142 (1011)
-.+.-.+|++= .| +++++...++..|.+.+++..|++.
T Consensus 68 ~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 112 (260)
T PF04190_consen 68 ERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERH 112 (260)
T ss_dssp THHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 22333444441 22 4688989999999999999988775
No 358
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.64 E-value=1.2e+03 Score=33.97 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 194 HEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS 261 (1011)
Q Consensus 194 ~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~n 261 (1011)
...+-+.-+++|....|+++-|-..+=.+... ..++....+|..+-..|+-..|...+++.++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~---r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKES---RLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc---ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 45678889999999999999998777666422 234455667889999999999999999999765
No 359
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=45.76 E-value=65 Score=30.64 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=34.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGK 61 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk 61 (1011)
+.+-.-++..|||+.|.+.+.+.-+..++.+..+.+-|.+-..+|+
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 4455567789999999999999977766666666667777666664
No 360
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.73 E-value=49 Score=36.86 Aligned_cols=65 Identities=11% Similarity=0.018 Sum_probs=42.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
++-..|...++.+.|..+-++.+..+|+++.-...-+.+|.+.+.+..|.+........-|+.++
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 33445666666777777777777777776655666666777777777666665555666676664
No 361
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.35 E-value=82 Score=32.92 Aligned_cols=54 Identities=6% Similarity=-0.171 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHH
Q 001799 105 ATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWA 159 (1011)
Q Consensus 105 A~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wa 159 (1011)
..+..++.++..|+ +.++..+..++...|+.++|++...++...+|.+.+.-|.
T Consensus 130 ~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 130 YIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 44556777888896 7788899999999999999999999999999977665453
No 362
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=44.90 E-value=2.4e+02 Score=31.82 Aligned_cols=62 Identities=19% Similarity=0.124 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 48 ALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGK 115 (1011)
Q Consensus 48 a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~ 115 (1011)
++.-++..+...|+++.+...+++.++. .|.|...|..+...|...|+...|+..|++.-+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3344555667788899998888876553 7999999999999999999999999999988663
No 363
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.67 E-value=2.7e+02 Score=36.28 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=43.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHH----HHHHHHCCChHHHHHHHHHH
Q 001799 17 RPIWDAIDSRQFKNALKQSTALLAKYPNSPY-ALALK----ALVLERMGKCDESLSVSLQA 72 (1011)
Q Consensus 17 ~~I~dald~gn~KqAL~l~dklLKk~P~~~~-a~aLK----A~aL~rlgk~dEAl~l~~~a 72 (1011)
.+|++++...+|..|+.+++-....+|.... ....+ |.-++..|++++|.+.+.+.
T Consensus 312 ~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 312 KQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 4788999999999999999887766665532 33333 45588999999999999874
No 364
>PF13041 PPR_2: PPR repeat family
Probab=42.62 E-value=24 Score=28.21 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcchhhhhhhhhhhhhh
Q 001799 510 KVLLVHLYSHLGALPLAYEWYKALDVKNILMETVSHHIL 548 (1011)
Q Consensus 510 kLlLvrLY~~LGa~s~A~~~y~~LdvK~IQ~DTLghll~ 548 (1011)
--.+++-|+.-|.++.|.++|+.+.-++++-|+..|.++
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 346789999999999999999999999999998888653
No 365
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.89 E-value=4.3e+02 Score=34.01 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 001799 196 PEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCL 275 (1011)
Q Consensus 196 ~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~al 275 (1011)
.+...-|+.-|..+|++++|...+-+.++...|..+-.-++ ...+..+...+++.+.+..-.+-+-...++.++
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfL------daq~IknLt~YLe~L~~~gla~~dhttlLLncY 441 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFL------DAQRIKNLTSYLEALHKKGLANSDHTTLLLNCY 441 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhc------CHHHHHHHHHHHHHHHHcccccchhHHHHHHHH
Confidence 34556788999999999999988888876533333322222 223334455556666666655555555666777
Q ss_pred hccC
Q 001799 276 LEDD 279 (1011)
Q Consensus 276 l~~~ 279 (1011)
.+.+
T Consensus 442 iKlk 445 (933)
T KOG2114|consen 442 IKLK 445 (933)
T ss_pred HHhc
Confidence 6654
No 366
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.52 E-value=1.6e+02 Score=36.51 Aligned_cols=93 Identities=12% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHH--HHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPY----ALALK--ALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTL 89 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~~~----a~aLK--A~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al 89 (1011)
.++.-+.|...+|.-+++.+.+-++-.|.+-+ ++..+ +++|..+.+.|.|.+.+.+|-+. .|..+-+.
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~------d~~~~l~q 431 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV------DRQSPLCQ 431 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh------ccccHHHH
Confidence 45667889999999999999999999997753 44444 55677788999999999988553 45556666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 90 STLQIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 90 ~~Lg~~~~~lg~~~eA~~~YekAlk 114 (1011)
..+-.+..--+.-++|+.+..+...
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHh
Confidence 5566666667777888777655433
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.37 E-value=2.8e+02 Score=27.18 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHH
Q 001799 14 RRVRPIWDAIDS-RQFKNALKQSTALLAKYPNSP----YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLT 88 (1011)
Q Consensus 14 Rrl~~I~dald~-gn~KqAL~l~dklLKk~P~~~----~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~a 88 (1011)
|-++=+.+.+-. +.-..-..+++++++..++++ ..++++-.+.+.. -.+++.+++... ........-+..
T Consensus 27 ~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~-~~~~~~~if~~l----~~~~IG~~~A~f 101 (126)
T PF08311_consen 27 RYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD-LSSDPREIFKFL----YSKGIGTKLALF 101 (126)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT-TBSHHHHHHHHH----HHHTTSTTBHHH
T ss_pred HHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH-HccCHHHHHHHH----HHcCccHHHHHH
Confidence 333434444433 333444455555555554432 2344444443332 112555555432 111234555566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYAC 113 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAl 113 (1011)
+...+.++...|++.+|.++|+.++
T Consensus 102 Y~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 102 YEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 6666666666666666666666553
No 368
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=41.30 E-value=80 Score=24.09 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 001799 234 LRMQGRLLARQGDYTAAAQI--YKKILELSPDD 264 (1011)
Q Consensus 234 l~l~a~ll~klg~~eeA~~~--~~kaL~~nPDd 264 (1011)
++-.|-.+...|++++|.+. |+-+...+|.|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 44455666667777777777 44555555543
No 369
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=41.11 E-value=84 Score=31.07 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTAL----LAKYPNSPY-ALALKALVLERMGKCDESLSVSLQA 72 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dkl----LKk~P~~~~-a~aLKA~aL~rlgk~dEAl~l~~~a 72 (1011)
.+.|.+++..|+.+.|+..+++. ++.+++-.+ .+..+..-+.+.|+..+|+++.++-
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~ 66 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKH 66 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47899999999999999999875 455555543 4455666677889999999988763
No 370
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=40.54 E-value=2.6e+02 Score=32.08 Aligned_cols=104 Identities=15% Similarity=0.087 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
.|..++..|+.+.|.++..+. |. |+ --++.+|..+|...|++++=...... +++| ..+.....+..
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F-kv-~d-krfw~lki~aLa~~~~w~eL~~fa~s--------kKsP---IGyepFv~~~~ 248 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF-KV-PD-KRFWWLKIKALAENKDWDELEKFAKS--------KKSP---IGYEPFVEACL 248 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc-CC-cH-HHHHHHHHHHHHhcCCHHHHHHHHhC--------CCCC---CChHHHHHHHH
Confidence 455666777777666553332 32 32 34566777777777777664443221 1233 33344445555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAI 144 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~ 144 (1011)
..|+..+|..+..+ -|. + .-...|++.|+|.+|.+.|.
T Consensus 249 ~~~~~~eA~~yI~k----~~~-~----~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPK----IPD-E----ERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHh----CCh-H----HHHHHHHHCCCHHHHHHHHH
Confidence 66777776655444 333 1 33455677777777766543
No 371
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=40.42 E-value=51 Score=25.57 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 87 LTLSTLQIVFQRLDRLDLATSCYEYACGK 115 (1011)
Q Consensus 87 ~al~~Lg~~~~~lg~~~eA~~~YekAlk~ 115 (1011)
+++..||.+-.+.++|++|+.=|+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778999999999999999999999875
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.64 E-value=1e+03 Score=31.28 Aligned_cols=48 Identities=8% Similarity=0.029 Sum_probs=30.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAK 73 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~al 73 (1011)
.+...|+.--+..++..|++.+.. ...+..|...|+.++|++++.+..
T Consensus 484 llrlen~~c~vee~e~~L~k~~~y----~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 484 LLRLENNHCDVEEIETVLKKSKKY----RELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred hhhccCCCcchHHHHHHHHhcccH----HHHHHHHHhccchHHHHHHHHHHh
Confidence 344445555566677777776652 334556667788888888777653
No 373
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=38.46 E-value=1.6e+02 Score=32.19 Aligned_cols=95 Identities=18% Similarity=0.073 Sum_probs=54.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH--------HHH----HHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHH--
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSP--------YAL----ALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDL-- 87 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~--------~a~----aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~-- 87 (1011)
.||.|+|..|+..++.+++.+-..| .+. +--+......|+.-+.. ....... +..+-..|....
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~-~~~~~~~-l~~~~dmpd~vrAK 170 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY-FLRVFLD-LTTEWDMPDEVRAK 170 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH-HHHHHHH-HHhcCCCChHHHHH
Confidence 5799999999999999999852222 221 11222334455532211 1121212 211112343333
Q ss_pred HHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCC
Q 001799 88 TLSTLQIVFQ---------RLDRLDLATSCYEYACGKYHN 118 (1011)
Q Consensus 88 al~~Lg~~~~---------~lg~~~eA~~~YekAlk~~P~ 118 (1011)
.+...|..+. ..++...|..++++|++.+|+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 3557777773 445778899999999999987
No 374
>PF12854 PPR_1: PPR repeat
Probab=37.99 E-value=65 Score=23.88 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=23.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 84 MDDLTLSTLQIVFQRLDRLDLATSCYEY 111 (1011)
Q Consensus 84 ~D~~al~~Lg~~~~~lg~~~eA~~~Yek 111 (1011)
-|..++..|-..|...|+.++|.+++++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3778888999999999999999988865
No 375
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.59 E-value=1.2e+02 Score=34.35 Aligned_cols=31 Identities=6% Similarity=-0.098 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 125 GLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 125 ~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
.....|...|.+.+|.+...++++.+|=+..
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~ 314 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQ 314 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhH
Confidence 4456788999999999998889998886543
No 376
>PF13041 PPR_2: PPR repeat family
Probab=37.50 E-value=1.1e+02 Score=24.36 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=19.9
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 85 DDLTLSTLQIVFQRLDRLDLATSCYEYACGK 115 (1011)
Q Consensus 85 D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~ 115 (1011)
|..++..+-..|.+.|++++|.++|++..+.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3455666666666667777777777666653
No 377
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=36.20 E-value=1.2e+03 Score=31.33 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHHHHHHhcC
Q 001799 172 GGEKLLLLAEGLLKKHVASH 191 (1011)
Q Consensus 172 ~a~klL~LAek~Lekai~~~ 191 (1011)
+..++..+|+.|+.+..+..
T Consensus 994 ~~de~~~~a~~L~s~L~e~~ 1013 (1265)
T KOG1920|consen 994 GKDELVILAEELVSRLVEQR 1013 (1265)
T ss_pred CHHHHHHHHHHHHHHHHHcc
Confidence 44566677777777666544
No 378
>PRK12798 chemotaxis protein; Reviewed
Probab=35.71 E-value=8.3e+02 Score=29.14 Aligned_cols=223 Identities=11% Similarity=-0.113 Sum_probs=125.8
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 001799 35 STALLAKYPN-SPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQI-VFQRLDRLDLATSCYEYA 112 (1011)
Q Consensus 35 ~dklLKk~P~-~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~-~~~~lg~~~eA~~~YekA 112 (1011)
+++++..++. +.......|...+-.|+.++|.+.+..+ .+. .-|...-.+..|.. .+..-.++.+|++.|..|
T Consensus 100 lr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i---~~~--~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~a 174 (421)
T PRK12798 100 LRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGV---APE--YLPAELGAYLALVQGNLMVATDPATALKLLDQA 174 (421)
T ss_pred HHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcC---Chh--hcCchhhhHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 4666666665 5667788888889999999999987653 111 12333333443333 344566899999999999
Q ss_pred HHhCCCC--HH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 001799 113 CGKYHNN--MD-HMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF--LLWAVCSIQLQVLCGNGGEKLLLLAEGLLKKH 187 (1011)
Q Consensus 113 lk~~P~n--~e-l~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry--~~Wai~sl~Lq~~~~~~a~klL~LAek~Leka 187 (1011)
-=.-|+- +| ++..-.......|+..++...+.+..+.|..++| .||..+...+-....+.. ......++.
T Consensus 175 RLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~---~~~l~~~ls-- 249 (421)
T PRK12798 175 RLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR---DARLVEILS-- 249 (421)
T ss_pred HHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc---HHHHHHHHH--
Confidence 8899984 23 4556666778899999999999999999999886 455544444322221111 112222321
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCCh--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Q 001799 188 VASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIE--VD-KLRMQGRLLARQGDYTAAAQIYKKILE--LSP 262 (1011)
Q Consensus 188 i~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~--~~-~l~l~a~ll~klg~~eeA~~~~~kaL~--~nP 262 (1011)
..++-...+.++..++--.-.|+.+-|.-.-.+++....... .. .....+-...-..+.+++.+....+=. +.|
T Consensus 250 -~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 250 -FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred -hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 112211112222223444457887777666666643211111 11 111122333334556666665555432 334
Q ss_pred CCHHHH
Q 001799 263 DDWECF 268 (1011)
Q Consensus 263 Ddw~~~ 268 (1011)
.|-...
T Consensus 329 ~Dr~Ll 334 (421)
T PRK12798 329 RDRALL 334 (421)
T ss_pred hhHHHH
Confidence 454433
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=35.58 E-value=1.6e+02 Score=32.01 Aligned_cols=59 Identities=8% Similarity=-0.035 Sum_probs=41.3
Q ss_pred HHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 001799 55 VLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNN 119 (1011)
Q Consensus 55 aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n 119 (1011)
.+.+.+..++|+...+.-++ ..|+|....+.|-.+|.-.|++++|..-.+-+....|+.
T Consensus 10 eLL~~~sL~dai~~a~~qVk------akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVK------AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHh------cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 45666777777776655322 257777777777777777777777777777777777764
No 380
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=35.47 E-value=9.6e+02 Score=29.79 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH-HcCCHHHHHH
Q 001799 29 KNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ-RLDRLDLATS 107 (1011)
Q Consensus 29 KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~-~lg~~~eA~~ 107 (1011)
+.+-..|+..|.++|...-++.-=|....++|..+.+.+++++++.- .|.-.+.|.-+-.... .-|+.+....
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a------ip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA------IPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh------hhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 56777889999999998878877788888999999999999998664 4656666655444443 4567777889
Q ss_pred HHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 001799 108 CYEYACGKYHNN---MDHMMGLFNCYVREYSFVKQQQTAIKMYKH 149 (1011)
Q Consensus 108 ~YekAlk~~P~n---~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~ 149 (1011)
.|++|......+ -.++..++..-.+..+++.-.+++.+++..
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 999998876643 346667777778888888888887777653
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.58 E-value=1.5e+02 Score=34.05 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 001799 26 RQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLA 105 (1011)
Q Consensus 26 gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA 105 (1011)
-+|..-..+|+.+....| +|.....++.++.....++-++..++...+ ++.--.....+..-|.++..+|+.++|
T Consensus 310 tDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~----~~~L~gy~~~h~~RadlL~rLgr~~eA 384 (415)
T COG4941 310 TDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA----RPRLDGYHLYHAARADLLARLGRVEEA 384 (415)
T ss_pred CChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc----ccccccccccHHHHHHHHHHhCChHHH
Confidence 466666677777777666 456667778887777778888877664322 111122334566788899999999999
Q ss_pred HHHHHHHHHhCCCCHH
Q 001799 106 TSCYEYACGKYHNNMD 121 (1011)
Q Consensus 106 ~~~YekAlk~~P~n~e 121 (1011)
.+.|++|+..-++..+
T Consensus 385 r~aydrAi~La~~~ae 400 (415)
T COG4941 385 RAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHHHhcCChHH
Confidence 9999999999888655
No 382
>PRK11619 lytic murein transglycosylase; Provisional
Probab=33.20 E-value=1.1e+03 Score=29.83 Aligned_cols=59 Identities=14% Similarity=0.044 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 200 IVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILE 259 (1011)
Q Consensus 200 ~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~ 259 (1011)
....++-...++++.+...+...... ......+.|=.|+.+...|+.++|...|+++..
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344555777777777766664221 223344556678888889999999999999743
No 383
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=32.10 E-value=9.8e+02 Score=30.42 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=20.4
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 001799 227 LVIEVDKLRMQGRLLARQGDYTAAAQIYKK 256 (1011)
Q Consensus 227 ~~~~~~~l~l~a~ll~klg~~eeA~~~~~k 256 (1011)
+|.+...+-..|+++...|.-++|.+.|-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 344445555677888888888888776644
No 384
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.06 E-value=1.3e+03 Score=30.13 Aligned_cols=169 Identities=21% Similarity=0.192 Sum_probs=93.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHc
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKA--LVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRL 99 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA--~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~l 99 (1011)
.+...-|+-|+.++.+- ..+.+..+-..+. --+++.|++++|...|-+.+..+ .|. .+. .-|...
T Consensus 344 L~kK~ly~~Ai~LAk~~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-----e~s--~Vi----~kfLda 410 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQ--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-----EPS--EVI----KKFLDA 410 (933)
T ss_pred HHHhhhHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-----ChH--HHH----HHhcCH
Confidence 45566778888776541 1122222333333 34778999999999888875543 221 111 112223
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHhcCCcHHHHH
Q 001799 100 DRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF--LLWAVCSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 100 g~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry--~~Wai~sl~Lq~~~~~~a~klL 177 (1011)
.+..+-..+++...++.=.+.+-...|..+|+..+|-++- +.+.+..++... -+=.++-+..+ -+.+
T Consensus 411 q~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL----~efI~~~~~g~~~fd~e~al~Ilr~-------snyl 479 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKL----TEFISKCDKGEWFFDVETALEILRK-------SNYL 479 (933)
T ss_pred HHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHH----HHHHhcCCCcceeeeHHHHHHHHHH-------hChH
Confidence 3344455566777777777777778888999999988753 334444453211 00111111111 1234
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 001799 178 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGT 222 (1011)
Q Consensus 178 ~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~ 222 (1011)
+.|+.+..|.-. + ++ .+--+++..++|+||+.++.+.
T Consensus 480 ~~a~~LA~k~~~-----h--e~-vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 480 DEAELLATKFKK-----H--EW-VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHHhcc-----C--HH-HHHHHHHHhcCHHHHHHHHhcC
Confidence 555555443211 1 22 2334567788999999999876
No 385
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=31.42 E-value=7.4e+02 Score=27.23 Aligned_cols=82 Identities=18% Similarity=0.030 Sum_probs=47.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHH-
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLER----MGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQR- 98 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~r----lgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~- 98 (1011)
..+++..|+..+.++-.. ..+.+....+..+.. ..+..+|+..++.+.+ ..++.+...||.+|..
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHHHhHHHHHhcC
Confidence 456666776666665442 223445555555544 2346666666665422 3455666777777665
Q ss_pred ---cCCHHHHHHHHHHHHHh
Q 001799 99 ---LDRLDLATSCYEYACGK 115 (1011)
Q Consensus 99 ---lg~~~eA~~~YekAlk~ 115 (1011)
..++.+|...|++|.+.
T Consensus 123 ~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 123 RGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred CCcccCHHHHHHHHHHHHHc
Confidence 33666777777777655
No 386
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=31.15 E-value=2.2e+02 Score=35.37 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=60.5
Q ss_pred HHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001799 53 ALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVR 132 (1011)
Q Consensus 53 A~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr 132 (1011)
++.+.+..+.+.|.++.+.- ++. .......+..-+..+-+.++.+.|-++|++.+..+|+ +.++.|+....+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (578)
T PRK15490 15 CLTLKQEKKLAQAVALIDSE---LPT---EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN 86 (578)
T ss_pred HHHHHHHhhHHHHHHHHHHh---CCc---cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh
Confidence 44566677777777766542 211 1222233444456777889999999999999999999 678899999999
Q ss_pred hcCHHHHHHHHH
Q 001799 133 EYSFVKQQQTAI 144 (1011)
Q Consensus 133 ~~d~~~Aqq~a~ 144 (1011)
.|-...|+.+.+
T Consensus 87 ~~~~~~~~~~~~ 98 (578)
T PRK15490 87 TGLAKDAQLILK 98 (578)
T ss_pred hhhhhHHHHHHH
Confidence 998888887644
No 387
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.39 E-value=3.3e+02 Score=34.57 Aligned_cols=105 Identities=14% Similarity=0.044 Sum_probs=74.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHH
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~ 97 (1011)
.|...+..|+.++|.++-.+. | -|+- -.+-+|..+|...++.+|=.+..+. ++.| .-+.-.-.+..
T Consensus 690 Tv~~li~~g~~k~a~ql~~~F-k-ipdK-r~~wLk~~aLa~~~kweeLekfAks--------kksP---IGy~PFVe~c~ 755 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDF-K-IPDK-RLWWLKLTALADIKKWEELEKFAKS--------KKSP---IGYLPFVEACL 755 (829)
T ss_pred HHHHHHHccchHHHHHHHHhc-C-Ccch-hhHHHHHHHHHhhhhHHHHHHHHhc--------cCCC---CCchhHHHHHH
Confidence 566889999999999886663 3 2543 4667899999999999886665442 1234 33444556677
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAI 144 (1011)
Q Consensus 98 ~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~ 144 (1011)
..|+-+||.++.-+ -|+.. ....+|++.|++++|.+.|.
T Consensus 756 ~~~n~~EA~KYipr----v~~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPR----VGGLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhc----cCChH----HHHHHHHHhccHHHHHHHHH
Confidence 88888998876533 33322 57789999999999987643
No 388
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.80 E-value=5.6e+02 Score=32.78 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=91.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHc
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALV--LERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRL 99 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~a--L~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~l 99 (1011)
.++.+.|.+|+..+......-|....-...++++ |.-.|++++|...|-.. + -++...|..--..+...
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m---~------gn~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM---L------GNNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHH---h------cchHHHHHHHHHHhccc
Confidence 4577899999988887776666665666777776 45578999999888764 1 24566676666677777
Q ss_pred CCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCcHHHHH
Q 001799 100 DRLDLATSCYE--YACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 100 g~~~eA~~~Ye--kAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~klL 177 (1011)
++..+...+.= .+ +..|. .+......++. ..+..+.++.+..|..-|..-.+. .+..
T Consensus 437 ~~l~~Ia~~lPt~~~-rL~p~---vYemvLve~L~-----~~~~~F~e~i~~Wp~~Lys~l~ii----sa~~-------- 495 (846)
T KOG2066|consen 437 DQLTDIAPYLPTGPP-RLKPL---VYEMVLVEFLA-----SDVKGFLELIKEWPGHLYSVLTII----SATE-------- 495 (846)
T ss_pred cccchhhccCCCCCc-ccCch---HHHHHHHHHHH-----HHHHHHHHHHHhCChhhhhhhHHH----hhcc--------
Confidence 76555433210 00 12222 22222222222 234455566677776654211111 1111
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 001799 178 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGT 222 (1011)
Q Consensus 178 ~LAek~Lekai~~~p~~~~eel~l~~~IL~~qgk~eEAL~~L~~~ 222 (1011)
..++ .+. ++..-.-.++..|...++|++|+..+-..
T Consensus 496 ----~q~~----q~S-e~~~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 496 ----PQIK----QNS-ESTALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ----hHHH----hhc-cchhHHHHHHHHHHHccChHHHHHHHHhc
Confidence 0111 111 22233334888889999999999887765
No 389
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.41 E-value=4.1e+02 Score=28.86 Aligned_cols=83 Identities=13% Similarity=0.080 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 001799 47 YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGL 126 (1011)
Q Consensus 47 ~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~L 126 (1011)
+....+|.-+.-.+++++|+..+-.. ...|+ ....+-.++...|++..|..+| ++++-.+.+.+....+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p-------s~~~~---~~~~Il~~L~~~~~~~lAL~y~-~~~~p~l~s~~~~~~~ 147 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP-------SLIPW---FPDKILQALLRRGDPKLALRYL-RAVGPPLSSPEALTLY 147 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC-------CCCcc---cHHHHHHHHHHCCChhHHHHHH-HhcCCCCCCHHHHHHH
Confidence 45566666666667777776654211 00121 1112333444467777666544 3455555666655555
Q ss_pred HHHHHHhcCHHHHHH
Q 001799 127 FNCYVREYSFVKQQQ 141 (1011)
Q Consensus 127 f~ayvr~~d~~~Aqq 141 (1011)
+.. +..+..-+|-.
T Consensus 148 ~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 148 FVA-LANGLVTEAFS 161 (226)
T ss_pred HHH-HHcCCHHHHHH
Confidence 555 55666666543
No 390
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=29.33 E-value=59 Score=37.46 Aligned_cols=116 Identities=13% Similarity=0.011 Sum_probs=79.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCH---------HH-------HHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCC
Q 001799 21 DAIDSRQFKNALKQSTALLAKYP---NSP---------YA-------LALKALVLERMGKCDESLSVSLQAKDLLYQNDS 81 (1011)
Q Consensus 21 dald~gn~KqAL~l~dklLKk~P---~~~---------~a-------~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~ 81 (1011)
..+..++|..|..-+.+.++..- +.. .. ..--+.+....+++..|+..+..+++ .
T Consensus 231 ~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~------~ 304 (372)
T KOG0546|consen 231 KEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR------D 304 (372)
T ss_pred hhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc------c
Confidence 46778889888888888765421 110 00 11123444456777777766655533 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 001799 82 TLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQT 142 (1011)
Q Consensus 82 ~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~ 142 (1011)
.+....+++-.+..+....++++|..-++.|....|++.++...+...-....++...++-
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~ 365 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKK 365 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999988777766666666666655543
No 391
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.76 E-value=5.5e+02 Score=32.51 Aligned_cols=114 Identities=13% Similarity=0.015 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--ChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMG--KCDESLSVSLQAKDLLYQNDSTLMDDLTLST 91 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlg--k~dEAl~l~~~alelL~~d~~~P~D~~al~~ 91 (1011)
..+.++.++++.||+..+.++..++ +.+|=.+++....- ..+.+ .+++-...+++ .|+-+..-.+
T Consensus 35 ~~f~~A~~a~~~g~~~~~~~~~~~l-~d~pL~~yl~y~~L--~~~l~~~~~~ev~~Fl~~----------~~~~P~~~~L 101 (644)
T PRK11619 35 QRYQQIKQAWDNRQMDVVEQLMPTL-KDYPLYPYLEYRQL--TQDLMNQPAVQVTNFIRA----------NPTLPPARSL 101 (644)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhc-cCCCcHhHHHHHHH--HhccccCCHHHHHHHHHH----------CCCCchHHHH
Confidence 4578888889999988887766653 55564333322221 12222 34433332221 2333333333
Q ss_pred HHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 001799 92 LQIV---FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAI 144 (1011)
Q Consensus 92 Lg~~---~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~ 144 (1011)
.... +...++..+.+..| ...|.+.+....++.+....|+-.+|...+.
T Consensus 102 r~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~ 153 (644)
T PRK11619 102 QSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAK 153 (644)
T ss_pred HHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3222 23344555555432 2347777777777788888887665544433
No 392
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=1.2e+03 Score=28.97 Aligned_cols=172 Identities=17% Similarity=0.087 Sum_probs=86.2
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHH
Q 001799 81 STLMDDLTLSTLQIVFQRLDRLDLATSCYEYACG-----KYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERF 155 (1011)
Q Consensus 81 ~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk-----~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry 155 (1011)
..|.+.+++..++.+++..|+.+-|..+.++++= ..|.. .+|.-. -+|-=..|.||.
T Consensus 279 ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F-----~~~sg~-------------cRL~y~~~eNR~ 340 (665)
T KOG2422|consen 279 SSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNF-----IPFSGN-------------CRLPYIYPENRQ 340 (665)
T ss_pred cCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccc-----cccccc-------------ccCcccchhhHH
Confidence 3689999999999999999999988887776642 12211 000000 012222345553
Q ss_pred HHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHhhhcc----cCCC
Q 001799 156 LLWAVCSIQLQVLCGN-GGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQ-QSKYGDALEILSGTLGS----LLVI 229 (1011)
Q Consensus 156 ~~Wai~sl~Lq~~~~~-~a~klL~LAek~Lekai~~~p~~~~eel~l~~~IL~~-qgk~eEAL~~L~~~l~~----~~~~ 229 (1011)
.|.++.. +||..... ..+.++..+.-+ .+.+|.+++-...+++.+|.. ..+|+=.+++.+..-.. ..|.
T Consensus 341 FyL~l~r-~m~~l~~RGC~rTA~E~cKll----lsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN 415 (665)
T KOG2422|consen 341 FYLALFR-YMQSLAQRGCWRTALEWCKLL----LSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPN 415 (665)
T ss_pred HHHHHHH-HHHHHHhcCChHHHHHHHHHH----hhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCC
Confidence 2222222 22222111 233334333322 235555566666666655553 34555555555544110 0221
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 001799 230 EVDKLRMQGRLLARQGD---YTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 230 ~~~~l~l~a~ll~klg~---~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~~ 279 (1011)
-. .-...|..|..... -+.|...+.+++...|- ++..+++.+.-.+
T Consensus 416 ~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~---vl~eLld~~~l~~ 464 (665)
T KOG2422|consen 416 FG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL---VLSELLDELLLGD 464 (665)
T ss_pred ch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH---HHHHHHHhccCCc
Confidence 11 11123444444333 57788888888888774 4455555544333
No 393
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=28.37 E-value=1e+02 Score=27.97 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC
Q 001799 26 RQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL 83 (1011)
Q Consensus 26 gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P 83 (1011)
+.|++|...++++|+.+.. |..++|+..|++++..+......|
T Consensus 3 ~~~~~A~~~I~kaL~~dE~---------------g~~e~Al~~Y~~gi~~l~eg~ai~ 45 (79)
T cd02679 3 GYYKQAFEEISKALRADEW---------------GDKEQALAHYRKGLRELEEGIAVP 45 (79)
T ss_pred hHHHHHHHHHHHHhhhhhc---------------CCHHHHHHHHHHHHHHHHHHcCCC
Confidence 5678888888888877543 778888888888877665443344
No 394
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.23 E-value=1.2e+03 Score=28.70 Aligned_cols=95 Identities=11% Similarity=0.145 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 001799 29 KNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSC 108 (1011)
Q Consensus 29 KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~ 108 (1011)
+.+.+...+..+.+|+++......|.++...|+.+.|+......++.-.+ --..-.+.-+++++....+|..|...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k----Q~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK----QVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 44555555666668888888888888888888855555554433210000 00112233456666677777777766
Q ss_pred HHHHHHhCCCCHHHHHHHHH
Q 001799 109 YEYACGKYHNNMDHMMGLFN 128 (1011)
Q Consensus 109 YekAlk~~P~n~el~~~Lf~ 128 (1011)
+....+..- -..+.+..|.
T Consensus 326 ~~~L~desd-WS~a~Y~Yfa 344 (546)
T KOG3783|consen 326 FDLLRDESD-WSHAFYTYFA 344 (546)
T ss_pred HHHHHhhhh-hhHHHHHHHH
Confidence 666544332 2334444444
No 395
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=28.15 E-value=3.9e+02 Score=27.01 Aligned_cols=66 Identities=18% Similarity=0.120 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 001799 195 EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELS 261 (1011)
Q Consensus 195 ~~eel~l~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~n 261 (1011)
..+.+-+-..++-.+|+.+.--+++...... ....+..+.-.|.+|.+.|+..++.++++++-+..
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
No 396
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=27.48 E-value=6.2e+02 Score=28.65 Aligned_cols=90 Identities=11% Similarity=-0.011 Sum_probs=53.7
Q ss_pred HHHCCChHHHHHHHHHHHHhhhhC--CCCCCc-----HHHHHHHHH-HHHHcCCHHHHHHHHHHH---HHhCCCCHHHHH
Q 001799 56 LERMGKCDESLSVSLQAKDLLYQN--DSTLMD-----DLTLSTLQI-VFQRLDRLDLATSCYEYA---CGKYHNNMDHMM 124 (1011)
Q Consensus 56 L~rlgk~dEAl~l~~~alelL~~d--~~~P~D-----~~al~~Lg~-~~~~lg~~~eA~~~YekA---lk~~P~n~el~~ 124 (1011)
+.-..+|..|++.|+++++-+..+ ...|.+ --.+-.+|+ ++.++++..++..---+. -++-| +++..
T Consensus 45 LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklP--pkIle 122 (309)
T PF07163_consen 45 LVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILE 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHH
Confidence 444567777777777776655321 011211 012344554 788999999876532221 12233 34777
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Q 001799 125 GLFNCYVREYSFVKQQQTAIKMY 147 (1011)
Q Consensus 125 ~Lf~ayvr~~d~~~Aqq~a~kL~ 147 (1011)
.+...|.+.+++..++..+...+
T Consensus 123 LCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 123 LCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 78888999999988887755444
No 397
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=26.96 E-value=86 Score=21.62 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAlk 114 (1011)
|..+-..|...|++++|..+|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555566666666666666665543
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=26.70 E-value=3.2e+02 Score=27.54 Aligned_cols=48 Identities=4% Similarity=-0.179 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 001799 85 DDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVR 132 (1011)
Q Consensus 85 D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr 132 (1011)
..+.+...+.-....|++.-|.++...++..+|+|.++....+.++.+
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~ 116 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQ 116 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 445666666677788999999999999999999999887777666643
No 399
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=26.44 E-value=1.4e+03 Score=28.89 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=19.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHH
Q 001799 49 LALKALVLERMGKCDESLSVSLQ 71 (1011)
Q Consensus 49 ~aLKA~aL~rlgk~dEAl~l~~~ 71 (1011)
-.++|.++.-.|++.||..++++
T Consensus 635 ~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 635 DLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 36778888889999999998875
No 400
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.07 E-value=3.6e+02 Score=31.92 Aligned_cols=95 Identities=14% Similarity=0.056 Sum_probs=73.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 24 DSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGK--CDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 24 d~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk--~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
.....+.-+.+...+|+.+|+.-.++.-+..++.+.+. +..-+++|.++++. .|.+-.+|+-.-.+.....+
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~------D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQ------DPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc------CcccccchHHHHHHHHHHhc
Confidence 33466777899999999999999999999999998654 57888999998664 57778888766555544433
Q ss_pred ----HHHHHHHHHHHHHhCCCCHHHHH
Q 001799 102 ----LDLATSCYEYACGKYHNNMDHMM 124 (1011)
Q Consensus 102 ----~~eA~~~YekAlk~~P~n~el~~ 124 (1011)
..+-++.-.+++..++.|..++.
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHH
Confidence 34456677888888999988765
No 401
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.25 E-value=2.6e+02 Score=34.62 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=46.5
Q ss_pred HHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 001799 54 LVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVRE 133 (1011)
Q Consensus 54 ~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAlk~~P~n~el~~~Lf~ayvr~ 133 (1011)
.+..++|+.+.|.++..++ .++.-|..||.+....+++..|.+++.+|- | +-.|+.+|...
T Consensus 645 elal~lgrl~iA~~la~e~-----------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d---~~~LlLl~t~~ 705 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----------NSEVKWRQLGDAALSAGELPLASECFLRAR-----D---LGSLLLLYTSS 705 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----c---hhhhhhhhhhc
Confidence 3445678888888876543 345678888888888888888888887763 2 22455556566
Q ss_pred cCHHHHHH
Q 001799 134 YSFVKQQQ 141 (1011)
Q Consensus 134 ~d~~~Aqq 141 (1011)
|+-.....
T Consensus 706 g~~~~l~~ 713 (794)
T KOG0276|consen 706 GNAEGLAV 713 (794)
T ss_pred CChhHHHH
Confidence 66554433
No 402
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=24.96 E-value=72 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=24.0
Q ss_pred HHHHHHHHcCChHHHHHHHHhcchhhhhhh
Q 001799 512 LLVHLYSHLGALPLAYEWYKALDVKNILME 541 (1011)
Q Consensus 512 lLvrLY~~LGa~s~A~~~y~~LdvK~IQ~D 541 (1011)
.++.-|...|.+..|.++|..+.-+.+.-|
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 477889999999999999998866555433
No 403
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.78 E-value=9.1e+02 Score=28.50 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HH----HHHHHHHHHHHCCChHHHHHHHHH
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNS---PY----ALALKALVLERMGKCDESLSVSLQ 71 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~dklLKk~P~~---~~----a~aLKA~aL~rlgk~dEAl~l~~~ 71 (1011)
...+-.+++.++|..|.+.++.++.+.++. .. ...-+|+.+.-.-++++|.+.+++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 445558899999999999999999986532 22 334455556678899999998874
No 404
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=24.55 E-value=1.3e+03 Score=27.92 Aligned_cols=226 Identities=13% Similarity=0.055 Sum_probs=127.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCc-----HHHHHH-H
Q 001799 106 TSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNG-----GEKLLL-L 179 (1011)
Q Consensus 106 ~~~YekAlk~~P~n~el~~~Lf~ayvr~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~-----a~klL~-L 179 (1011)
.-+|++++.-.|=.+++++..++-.+..+|-++|.+++.+-....|.-.. .++.+....+..+ -++... +
T Consensus 288 ~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~----~lse~yel~nd~e~v~~~fdk~~q~L 363 (660)
T COG5107 288 HYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM----FLSEYYELVNDEEAVYGCFDKCTQDL 363 (660)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe----eHHHHHhhcccHHHHhhhHHHHHHHH
Confidence 33588899888988999999999999999999888877665555555211 1222222211110 011111 1
Q ss_pred H--HHHHHHHHhcC---CCCCHHHHHH------------HHHHHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHH-HH
Q 001799 180 A--EGLLKKHVASH---SLHEPEALIV------------YISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGR-LL 241 (1011)
Q Consensus 180 A--ek~Lekai~~~---p~~~~eel~l------------~~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~-ll 241 (1011)
+ +.+++.-..+. .++...++.+ +.....+..-.+.|..++-+.-...+ ...+.+..-|. -+
T Consensus 364 ~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~ 442 (660)
T COG5107 364 KRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEY 442 (660)
T ss_pred HHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHH
Confidence 1 11221111111 1122233322 22222233334555666655532111 11121111121 24
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccccccCCCCCCCCCCcccccccCcchHhhhhcHHHHHHHHH
Q 001799 242 ARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDDSSWCNAASSDPIHPQKSVDCKFSHLTDEVFNSRISEASTSVK 321 (1011)
Q Consensus 242 ~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~~~~w~~~~~~~~~~p~~~~~~~~~~l~~e~~~~~i~ea~~fi~ 321 (1011)
...|++.-|..+++-.|...||+..+...|+.-++.+.+ | +.|+++++
T Consensus 443 ~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind--------------------------e------~naraLFe 490 (660)
T COG5107 443 YATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND--------------------------E------ENARALFE 490 (660)
T ss_pred HhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc--------------------------H------HHHHHHHH
Confidence 568999999999999999999999999999988877542 1 24556665
Q ss_pred HHHhccCCCCchhhHhhchhHHHHHhhhCCCCchHHHHHHHHHHHHcCCccccHHhHHHHHhcCCHHHH
Q 001799 322 KLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSFGHLACFTSDVEDFLLVLSLDKK 390 (1011)
Q Consensus 322 ~l~~~~~~~~~Rgp~LA~LEL~~r~~~~G~~d~~~l~~~l~~Y~~kfg~K~cCf~DLk~Yl~~L~~e~~ 390 (1011)
.-+ |.++..++ ..+-+.+.+|-.+||+....++==+.|....+.+..
T Consensus 491 tsv----------~r~~~~q~------------k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 491 TSV----------ERLEKTQL------------KRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HhH----------HHHHHhhh------------hHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 322 12222322 236688899999999887776666677766666543
No 405
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=24.45 E-value=1.4e+02 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 001799 234 LRMQGRLLARQGDYTAAAQIYKKILEL 260 (1011)
Q Consensus 234 l~l~a~ll~klg~~eeA~~~~~kaL~~ 260 (1011)
+..+|++-...++|++|..-|+++|++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 455788888889999999999999875
No 406
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=24.39 E-value=91 Score=23.60 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=26.1
Q ss_pred cchhhhHHHHHHHHHHHhCcchhhhhHHHhh
Q 001799 739 PKVSSELKYLLDRYAKMLGFSLRDAVEVVSG 769 (1011)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 769 (1011)
+.+..|+...|+++|+-.|.|.++.|...+-
T Consensus 4 i~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~ 34 (39)
T PF01402_consen 4 IRLPDELYERLDELAKELGRSRSELIREAIR 34 (39)
T ss_dssp EEEEHHHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred EEeCHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3567789999999999999999998876653
No 407
>KOG3679 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.37 E-value=3.4e+02 Score=31.23 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCc--cccHHh---HHHHHhcC
Q 001799 356 ELMEAVLEYFLSFGHL--ACFTSD---VEDFLLVL 385 (1011)
Q Consensus 356 ~l~~~l~~Y~~kfg~K--~cCf~D---Lk~Yl~~L 385 (1011)
+++-.+.+||++.|-| +|.|+- |..|++.+
T Consensus 530 elilrlqeyfekqgvkdfacsfsgsiplqeyfeli 564 (802)
T KOG3679|consen 530 ELILRLQEYFEKQGVKDFACSFSGSIPLQEYFELI 564 (802)
T ss_pred HHHHHHHHHHHHcCcceeeeeccCCccHHHHHHHh
Confidence 5677889999999999 677653 44454433
No 408
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=24.14 E-value=1.1e+02 Score=34.04 Aligned_cols=97 Identities=20% Similarity=0.169 Sum_probs=63.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC----------CChHHHHHHHHHHHHhhhhCCCCCCcHHHHHH
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERM----------GKCDESLSVSLQAKDLLYQNDSTLMDDLTLST 91 (1011)
Q Consensus 22 ald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rl----------gk~dEAl~l~~~alelL~~d~~~P~D~~al~~ 91 (1011)
++|.+..-.|+.+++..++-.|.|.++...++.++..+ -...-|.++++.|+-.-........=--+...
T Consensus 5 L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~ 84 (368)
T COG5091 5 LYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFR 84 (368)
T ss_pred hhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhh
Confidence 45667778899999999999999998888888776542 45666777777764221110000000112334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 001799 92 LQIVFQRLDRLDLATSCYEYACGKYHN 118 (1011)
Q Consensus 92 Lg~~~~~lg~~~eA~~~YekAlk~~P~ 118 (1011)
.+..|....+|+.|..+|.+|.+.+-+
T Consensus 85 ~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 85 YFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 555667777888888888888776554
No 409
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.34 E-value=2.1e+02 Score=35.50 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=52.6
Q ss_pred HHHHcCChHHHHHHHHhhhcccCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Q 001799 205 ILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLED 278 (1011)
Q Consensus 205 IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~~nPDdw~~~~~yl~all~~ 278 (1011)
.+.++.+.+.+...++..+.. -......+..+|..+-..|..++|.++|+.++.++|| +.+..|...+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 87 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPT-EALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNT 87 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCc-cchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhh
Confidence 444566777788888887532 2233344667788899999999999999999999999 5666777776553
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=22.71 E-value=8.4e+02 Score=33.06 Aligned_cols=99 Identities=14% Similarity=0.060 Sum_probs=62.2
Q ss_pred hHHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHhhh--hCCCCCCc
Q 001799 15 RVRPIWDAIDSRQFKNALK------QSTA-LLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLY--QNDSTLMD 85 (1011)
Q Consensus 15 rl~~I~dald~gn~KqAL~------l~dk-lLKk~P~~~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~--~d~~~P~D 85 (1011)
-..+-..++..|.|+.|.. +++. .-..+|.....+...+.++.++|+.++|+....++.-+-. .....|.+
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3556667777888887777 6663 3455788888888899999999999999998877632110 11224544
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 86 DLTLSTLQIVFQRLDRLDLATSCYEYAC 113 (1011)
Q Consensus 86 ~~al~~Lg~~~~~lg~~~eA~~~YekAl 113 (1011)
...+..++......++...|+..+-+|.
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 4445455544444444444444444443
No 411
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.62 E-value=1.4e+02 Score=35.70 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=48.7
Q ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESL 66 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~dklLKk~P~~~~a~aLKA~aL~rlgk~dEAl 66 (1011)
+|-+...+++++.|.|.-|..+++++.-.+|++..++.+.|-++.++|--.|+.
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A 506 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESA 506 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccc
Confidence 678889999999999999999999999999999999999999999998665543
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.38 E-value=1.5e+02 Score=35.08 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhh-cc-----cCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 198 ALIVYISILEQQSKYGDALEILSGTL-GS-----LLV-IEVDKLRMQGRLLARQGDYTAAAQIYKKILE 259 (1011)
Q Consensus 198 el~l~~~IL~~qgk~eEAL~~L~~~l-~~-----~~~-~~~~~l~l~a~ll~klg~~eeA~~~~~kaL~ 259 (1011)
.+.-+.++....|+|..|++.++..- .. ..+ -....+|..|.+|.-++||.+|+..+..+|-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555688889999999999998652 11 012 1234577789999999999999999999885
No 413
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.24 E-value=4.2e+02 Score=32.39 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCC-CcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Q 001799 49 LALKALVLERMGKCDESLSVSLQAKDLLYQNDSTL-MDDLTLSTLQIVFQRLDR-LDLATSCYEYA 112 (1011)
Q Consensus 49 ~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P-~D~~al~~Lg~~~~~lg~-~~eA~~~YekA 112 (1011)
..+||.++-++|+...|-..+..+++.....+..| --|.+++-++.+|..++. ..++.+...+|
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kA 517 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKA 517 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 45566666666666555555554432211111111 113455566666666555 55566555555
No 414
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.13 E-value=4e+02 Score=29.13 Aligned_cols=81 Identities=15% Similarity=0.041 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHHhhhhCCCCCCcHHHHHHHHHHHHHcCC
Q 001799 28 FKNALKQSTALLAKYPNS------PYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDR 101 (1011)
Q Consensus 28 ~KqAL~l~dklLKk~P~~------~~a~aLKA~aL~rlgk~dEAl~l~~~alelL~~d~~~P~D~~al~~Lg~~~~~lg~ 101 (1011)
-+..+.+++++...+.+. .+.....|..+++.|++++|+++++.+...-.+++=..-...++..+-.|+..+|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 334566666665554433 23456778889999999999999998754322221112234556677778888998
Q ss_pred HHHHHHH
Q 001799 102 LDLATSC 108 (1011)
Q Consensus 102 ~~eA~~~ 108 (1011)
.++.+.+
T Consensus 234 ~~~~l~~ 240 (247)
T PF11817_consen 234 VEDYLTT 240 (247)
T ss_pred HHHHHHH
Confidence 8887654
No 415
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.75 E-value=1.6e+02 Score=35.00 Aligned_cols=58 Identities=17% Similarity=0.087 Sum_probs=35.8
Q ss_pred HHHHCCChHHHHHHHHHHHHhhhh---CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 001799 55 VLERMGKCDESLSVSLQAKDLLYQ---NDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYAC 113 (1011)
Q Consensus 55 aL~rlgk~dEAl~l~~~alelL~~---d~~~P~D~~al~~Lg~~~~~lg~~~eA~~~YekAl 113 (1011)
++.-+|++..|++.++.+ ++-.+ ..-.+.+..+++-+|.+|..++||.+|+.+|...+
T Consensus 131 vh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 131 VHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444578988888876542 21110 01134556667777777777777777777776654
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.69 E-value=1.6e+02 Score=23.64 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=17.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 001799 237 QGRLLARQGDYTAAAQIYKKILE 259 (1011)
Q Consensus 237 ~a~ll~klg~~eeA~~~~~kaL~ 259 (1011)
+|..|...|+++.|.+..++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 56777778888888888887774
No 417
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=21.25 E-value=1.7e+02 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 89 LSTLQIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 89 l~~Lg~~~~~lg~~~eA~~~YekAlk 114 (1011)
+..+-..|...|++++|.++|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555666677777777777766544
No 418
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=20.83 E-value=1.7e+02 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 001799 91 TLQIVFQRLDRLDLATSCYEYACG 114 (1011)
Q Consensus 91 ~Lg~~~~~lg~~~eA~~~YekAlk 114 (1011)
.|+.+|.++|+++.|.+..+..+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 467788888888888888888773
Done!