Query 001799
Match_columns 1011
No_of_seqs 312 out of 1478
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 17:22:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001799.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1093-1097//hhsearch_pdb/001799hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 176.0 46.1 247 18-279 5-251 (388)
2 2h6f_A Protein farnesyltransfe 1.0 1 1 171.0 27.6 246 22-277 107-365 (382)
3 4eqf_A PEX5-related protein; a 1.0 1 1 161.6 26.4 235 31-279 46-295 (365)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 160.4 38.0 208 53-276 6-214 (388)
5 3hym_B Cell division cycle pro 1.0 1 1 159.5 32.6 252 14-279 24-284 (330)
6 2xpi_A Anaphase-promoting comp 1.0 1 1 158.3 36.3 249 16-279 88-387 (597)
7 3fp2_A TPR repeat-containing p 1.0 1 1 156.8 35.4 411 16-533 29-488 (537)
8 1fch_A Peroxisomal targeting s 1.0 1 1 154.3 30.6 241 23-279 36-299 (368)
9 3hym_B Cell division cycle pro 1.0 1 1 154.0 28.3 246 19-275 63-314 (330)
10 3ieg_A DNAJ homolog subfamily 1.0 1 1 152.1 37.3 222 13-271 4-228 (359)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=176.03 Aligned_cols=247 Identities=16% Similarity=0.087 Sum_probs=215.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999983998999999999997399999999999999998799489999999999864107899991999999999999
Q 001799 18 PIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 18 ~I~dald~gn~KqAL~l~eklLKk~P~~~~a~aLKA~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~il~ 97 (1011)
....++..|++.+|++.++++++.+|++..+....+.++.+.|++++|...++.+++. .|.+..++..+|.++.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~------~p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ------NPLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHH
T ss_conf 7999987799999999999999849788999999999999868999999999999761------9786699999999998
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 86998999999999998479998889999999999269999999999999980992999999999999984289688999
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 98 ~lg~~deAi~~yekAik~~P~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~kll 177 (1011)
..|++++|+..|+++++.+|++.+.+..++.++...|++.+|.+.+.++.+..|+... .|..++.++. ..+. +
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~-~~g~-----~ 151 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC-VRSDLGNLLK-ALGR-----L 151 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH-HHHHHHHHHH-TTSC-----H
T ss_pred HCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH-HCCC-----H
T ss_conf 7799999999999998749653999999999999858999999999999975989689-9999999999-8468-----9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999888329999799999999999986996899999995230658874999999999999869999999999999
Q 001799 178 LLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKI 257 (1011)
Q Consensus 178 ~LAek~Lekai~~~p~~~~eel~ll~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg~~eeA~~~~~kl 257 (1011)
..|...+++++...| .+...+..++.++..+|++++|++.++.++.. .|..+..+...|.++...|++++|...++++
T Consensus 152 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 229 (388)
T 1w3b_A 152 EEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999987298-97899999999999859999999999999855-9886799999999999857899999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 9969999999999999973158
Q 001799 258 LELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 258 L~~nPDdw~~~~~ll~all~~~ 279 (1011)
+..+|++...+..+..+....+
T Consensus 230 l~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 230 LSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHHHHHHCC
T ss_conf 8529687899999999999868
No 2
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=1.00 E-value=1 Score=170.96 Aligned_cols=246 Identities=10% Similarity=-0.001 Sum_probs=211.9
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9983998999999999997399999999999999998799-489999999999864107899991999999999999869
Q 001799 22 AIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGK-CDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLD 100 (1011)
Q Consensus 22 ald~gn~KqAL~l~eklLKk~P~~~~a~aLKA~iL~rlgk-~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~il~~lg 100 (1011)
+...|++.+|+..++++++.+|++..++..+|.++.++|+ +++|+..+++++++ .|.+..+|..+|.++..+|
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------~P~~~~a~~~~g~~~~~~g 180 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------QPKNYQVWHHRRVLVEWLR 180 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCC
T ss_conf 9977985999999999998693279999999999998264799999999999987------8878999999999999846
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98999999999998479998889999999999269999999999999980992999999999999984289688999999
Q 001799 101 RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLLLLA 180 (1011)
Q Consensus 101 ~~deAi~~yekAik~~P~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~kll~LA 180 (1011)
++++|+..|++|++.+|++..++..++.++.+.+++.+|...+.++++..|++.. .|...+.++....+...+..+..+
T Consensus 181 ~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~-a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 181 DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNS-VWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 8899999999999858558999999999999817739999999999986889999-999999999984175267889999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC---------CHHH
Q ss_conf 999998883299997999999999999869--96899999995230658874999999999999869---------9999
Q 001799 181 EGLLKKHVASHSLHEPEALIVYISILEQQS--KYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQG---------DYTA 249 (1011)
Q Consensus 181 ek~Lekai~~~p~~~~eel~ll~~IL~~qg--k~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg---------~~ee 249 (1011)
...+++++..+| .+...+..++.++..+| ++++|++.+... . ..+.....+..+|.++.++| .+++
T Consensus 260 l~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-C-CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 999999998788-9989999999999736963169999999983-2-379979999999999998733233425779999
Q ss_pred HHHHHHHH-HHHCCCCHHHHHHHHHHHHC
Q ss_conf 99999999-99699999999999999731
Q 001799 250 AAQIYKKI-LELSPDDWECFLHYLGCLLE 277 (1011)
Q Consensus 250 A~~~~~kl-L~~nPDdw~~~~~ll~all~ 277 (1011)
|..+|+++ ++.+|+...+|..+...+..
T Consensus 337 A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 337 ALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999998887581108999999999999
No 3
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=1.00 E-value=1 Score=161.57 Aligned_cols=235 Identities=13% Similarity=0.068 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHCCCCHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 999999999739999999----9999999998799489999999999864107899991999999999999869989999
Q 001799 31 ALKQSTALLAKYPNSPYA----LALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLAT 106 (1011)
Q Consensus 31 AL~l~eklLKk~P~~~~a----~aLKA~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~il~~lg~~deAi 106 (1011)
+...+++.....|+++.. +..+|.++.+.|++++|+..++++++. .|.+..++..+|.+|...|++++|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (365)
T 4eqf_A 46 TVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAI 119 (365)
T ss_dssp -------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 0478887652044786121468999999999878989999999999875------9687999999999999779999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH---------HHHHHHHHCCCCHHHHH
Q ss_conf 999999984799988899999999992699999999999999809929999999---------99999984289688999
Q 001799 107 SCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAV---------CSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 107 ~~yekAik~~P~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~~Wai---------~sl~Lq~~~~~~a~kll 177 (1011)
..|+++++.+|++..++..++.+|...+++.+|...+.++.+..|+........ ++..+ . ...-+
T Consensus 120 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~--~----~~g~~ 193 (365)
T 4eqf_A 120 VALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP--V----DSSVL 193 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------CCHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHH--H----HHHHH
T ss_conf 99999986298778999999999973355999999999998749420578866333648899999998--5----01369
Q ss_pred HHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999888329999--7999999999999869968999999952306588749999999999998699999999999
Q 001799 178 LLAEGLLKKHVASHSLH--EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYK 255 (1011)
Q Consensus 178 ~LAek~Lekai~~~p~~--~~eel~ll~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg~~eeA~~~~~ 255 (1011)
..|...++++++..| . +...+..++.++..+|++++|++.++..+.. .|.....+...|.++...|++++|...++
T Consensus 194 ~~A~~~~~~al~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 194 EGVKELYLEAAHQNG-DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHSC-SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999997496-7457999999999999878899999999999874-97877999999999998488899999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 999969999999999999973158
Q 001799 256 KILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 256 klL~~nPDdw~~~~~ll~all~~~ 279 (1011)
++++.+|++...|..+..++...+
T Consensus 272 ~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 272 RALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 998529995399977999999878
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=160.43 Aligned_cols=208 Identities=11% Similarity=-0.024 Sum_probs=92.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 99999879948999999999986410789999199999999999986998999999999998479998889999999999
Q 001799 53 ALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVR 132 (1011)
Q Consensus 53 A~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~il~~lg~~deAi~~yekAik~~P~n~el~~~Lf~ay~r 132 (1011)
|..+++.|++++|+..++++++. .|.+..++..++.++...+++++|...++++++.+|.+.+.+..++.++.+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99998779999999999999984------978899999999999986899999999999976197866999999999987
Q ss_pred HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 26999999999999998099299999999999-99842896889999999999988832999979999999999998699
Q 001799 133 EYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQ-LQVLCGNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSK 211 (1011)
Q Consensus 133 ~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~-Lq~~~~~~a~kll~LAek~Lekai~~~p~~~~eel~ll~~IL~~qgk 211 (1011)
.|++.+|...+.++.+..|+... .|..++.. ....+. ..|...++++++..| ........++.++..+|+
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~-------~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFID-GYINLAAALVAAGDM-------EGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHSCS-------SHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHCCCH-------HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCC
T ss_conf 79999999999999874965399-999999999985899-------999999999997598-968999999999998468
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 68999999952306588749999999999998699999999999999969999999999999973
Q 001799 212 YGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLL 276 (1011)
Q Consensus 212 ~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg~~eeA~~~~~klL~~nPDdw~~~~~ll~all 276 (1011)
+++|++.++..+.. .|.....+...|.++...|++++|...++++++.+|++...|..+.....
T Consensus 151 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 151 LEEAKACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999999999872-98978999999999998599999999999998559886799999999999
No 5
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=159.50 Aligned_cols=252 Identities=13% Similarity=0.057 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 66999999998399899999999999739999999999999999879948999999999986410789999199999999
Q 001799 14 RRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQ 93 (1011)
Q Consensus 14 Rrl~~I~dald~gn~KqAL~l~eklLKk~P~~~~a~aLKA~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg 93 (1011)
-.+..+..++..|+|++|+..++++++.+|++..++...+.++.+.|++++|+..+.++++. .|.+..++..+|
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~ 97 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL------YPSNPVSWFAVG 97 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSTHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHHHHHHHH
T ss_conf 99999999998579999999999998739887346899999999863579999999999873------868789999999
Q ss_pred HHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999869-989999999999984799988899999999992699999999999999809929999999999999842896
Q 001799 94 IVFQRLD-RLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNG 172 (1011)
Q Consensus 94 ~il~~lg-~~deAi~~yekAik~~P~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~ 172 (1011)
.++...| ++++|...|+++++.+|++.+.+..++.++...+++.+|.+.+.++.+..|+... .|..++..+. ..++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~l~~~~~-~~~~- 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHL-PMLYIGLEYG-LTNN- 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSH-HHHHHHHHHH-HTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH-HHHH-
T ss_conf 999985065999999999999858765899999999999735799999999999986533289-9999899999-9864-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHC
Q ss_conf 889999999999988832999979999999999998699689999999523065--------887499999999999986
Q 001799 173 GEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSL--------LVIEVDKLRMQGRLLARQ 244 (1011)
Q Consensus 173 a~kll~LAek~Lekai~~~p~~~~eel~ll~~IL~~qgk~eEAL~~L~~~l~~~--------~~~~~~~l~l~A~ll~kl 244 (1011)
+..|...++++.+..| .+...+..++.++..+|++++|+..++..+... .+.....+...|.++...
T Consensus 175 ----~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 249 (330)
T 3hym_B 175 ----SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249 (330)
T ss_dssp ----HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf ----9999999999997687-87499999999999855699999999999997351054222247999999999999985
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 99999999999999969999999999999973158
Q 001799 245 GDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 245 g~~eeA~~~~~klL~~nPDdw~~~~~ll~all~~~ 279 (1011)
|++++|...++++++.+|++...|..+..++...+
T Consensus 250 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 284 (330)
T 3hym_B 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284 (330)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 48799999999998618364699999889999860
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=158.27 Aligned_cols=249 Identities=14% Similarity=-0.011 Sum_probs=185.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999839989999999999973999999999999999987994899999999998641078999919999999999
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~eklLKk~P~~~~a~aLKA~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~i 95 (1011)
..-+..++..|++.+|+..++++++..|+. ......+.++.+.|++++|+..+++++. .|.+..++..++.+
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDL-------YNRSSACRYLAAFC 159 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCG-------GGTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHHC-------CCCCHHHHHHHHHH
T ss_conf 999999987458347999999999608993-5799999999974769999999998733-------54565089999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 998699899999999999847999-------------------8889999999999269999999999999980992999
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNN-------------------MDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFL 156 (1011)
Q Consensus 96 l~~lg~~deAi~~yekAik~~P~n-------------------~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~ 156 (1011)
|...|++++|...|++ ..|.+ ...+..++..|.+.|++.+|.+.+.++.+..|+...
T Consensus 160 ~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~- 235 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE- 235 (597)
T ss_dssp HHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-
T ss_pred HHHHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHH-
T ss_conf 9988669999999842---488632232343343211235125899999889999839989999999999972932569-
Q ss_pred HHHHHHHHHH-----------------HHC-------------CC--CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 9999999999-----------------842-------------89--688999999999998883299997999999999
Q 001799 157 LWAVCSIQLQ-----------------VLC-------------GN--GGEKLLLLAEGLLKKHVASHSLHEPEALIVYIS 204 (1011)
Q Consensus 157 ~Wai~sl~Lq-----------------~~~-------------~~--~a~kll~LAek~Lekai~~~p~~~~eel~ll~~ 204 (1011)
.|..++.... ... .. ....-+..|.+.++++... | .+...+..++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-E-KSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-G-GCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-C-CHHHHHHHHHH
T ss_conf 999999850346156789998657742344308899999999999980731399999999876438-8-30999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 999869968999999952306588749999999999998699999999999999969999999999999973158
Q 001799 205 ILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 205 IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg~~eeA~~~~~klL~~nPDdw~~~~~ll~all~~~ 279 (1011)
++...|++++|++.++..+.. .|.+...+...+.++.+.|++++|...+++++..+|++...|..+...+...+
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEI-DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 999846899999999999972-95537999999999998277779999999998518354799999999999835
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=156.77 Aligned_cols=411 Identities=13% Similarity=0.037 Sum_probs=254.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999839989999999999973999999999999999987994899999999998641078999919999999999
Q 001799 16 VRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIV 95 (1011)
Q Consensus 16 l~~I~dald~gn~KqAL~l~eklLKk~P~~~~a~aLKA~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~i 95 (1011)
+.....++..|+|++|+..++++++.+|+++.++...|.++.++|++++|+..++++++. .|.+..++..+|.+
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~ 102 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI------KPDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_conf 999999998642999999999998638998489999999999868999999999999860------98628999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC--------HHH-----------
Q ss_conf 9986998999999999998479998889999999999269999999999999980992--------999-----------
Q 001799 96 FQRLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEE--------RFL----------- 156 (1011)
Q Consensus 96 l~~lg~~deAi~~yekAik~~P~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~--------ry~----------- 156 (1011)
+...|++++|+..|+ ++...|+..... ...+...+....+...+.++.+..|.. ...
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC--------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHHCCCHHHHHHHHH-HHHCCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 998389999999999-986487878588---9999987789889999999997474545434506757999997447499
Q ss_pred -----------------HHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHHC
Q ss_conf -----------------999999999984289---68899999999999888329999799-------999999999986
Q 001799 157 -----------------LWAVCSIQLQVLCGN---GGEKLLLLAEGLLKKHVASHSLHEPE-------ALIVYISILEQQ 209 (1011)
Q Consensus 157 -----------------~Wai~sl~Lq~~~~~---~a~kll~LAek~Lekai~~~p~~~~e-------el~ll~~IL~~q 209 (1011)
++..+..+.. .... .+...+..|...++++++..| .+.+ .+..++.++...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYS-ATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHT-CSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 999876325646178999999987887-6402068888799999999999998787-74044599999999999998754
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99689999999523065887499999999999986999999999999999699999999999999731586434347899
Q 001799 210 SKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDDSSWCNAASSD 289 (1011)
Q Consensus 210 gk~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg~~eeA~~~~~klL~~nPDdw~~~~~ll~all~~~~~w~~~~~~~ 289 (1011)
|++++|+..++..+.. .|. ...+...|.++...|++++|...++++++.+|++..+|..+..++...+
T Consensus 257 ~~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------- 324 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL-HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ---------- 324 (537)
T ss_dssp TCHHHHHHHHHHHHHH-CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----------
T ss_pred CCHHHHHHHHHHHHHC-CCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC----------
T ss_conf 5578999999999866-987-4699999999998037999999999975459998799999999998668----------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99998753433467624764210999999999987446898760347340157888766189990589999999999819
Q 001799 290 PIHPQKSVDCKFSHLTDEVFNSRISEASTSVKKLHADTSVNLIRCPYLANLEIERRKLLYGKNNNDELMEAVLEYFLSFG 369 (1011)
Q Consensus 290 ~~~p~~~~~~~~~~l~~e~~~~~i~ea~~~i~~l~~~~~~~~~Rgp~LA~LeL~~r~~~~G~~d~~~l~~~l~~Y~~~fg 369 (1011)
..+++...+++.+........--..+|.+.. ..|. ..+....+....+...
T Consensus 325 ----------------------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-----~~g~--~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 325 ----------------------DYKNAKEDFQKAQSLNPENVYPYIQLACLLY-----KQGK--FTESEAFFNETKLKFP 375 (537)
T ss_dssp ----------------------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH-----HTTC--HHHHHHHHHHHHHHCT
T ss_pred ----------------------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----HCCC--HHHHHHHHHHHHHHCC
T ss_conf ----------------------9999999999999859997799999999999-----8477--9999999999987399
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 95451886999895089888999999997115789842377897898899999985143579767899999999999983
Q 001799 370 HLACFTSDVEDFLLVLSLDKKTELLERLKSSSTSHSTESIKELGWFITLKKIQELIGNTYKLLVDELERSAVQMSEMYCK 449 (1011)
Q Consensus 370 ~K~cCf~DLk~Yl~~L~~~~~~~ll~~i~~~~~~~~~~~~k~l~~~I~~~Kl~r~lg~~~~~~~~~~~~~v~~l~~~Y~~ 449 (1011)
..+.++ ..++ .+....|. ..+..+.|.+
T Consensus 376 ~~~~~~----------------------------------~~l~------~~~~~~g~------------~~~A~~~~~~ 403 (537)
T 3fp2_A 376 TLPEVP----------------------------------TFFA------EILTDRGD------------FDTAIKQYDI 403 (537)
T ss_dssp TCTHHH----------------------------------HHHH------HHHHHTTC------------HHHHHHHHHH
T ss_pred CCHHHH----------------------------------HHHH------HHHHHHCC------------HHHHHHHHHH
T ss_conf 985999----------------------------------9999------99988378------------8999999999
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 08999999954444400089999999999877---118917999999999967640998645999999999981991899
Q 001799 450 SLPLSKDLDPQESIHGEELLSMASNVLVQLFW---RTSNYGYFMEAIMVLEFGLTVRRHAWQYKVLLVHLYSHLGALPLA 526 (1011)
Q Consensus 450 ~l~l~~dl~~tE~qp~Ddl~LLAa~~Ll~l~~---~~~~~~~L~~Ai~LLE~~L~~SP~n~~lkLlLvrLY~~LGa~s~A 526 (1011)
++...++........ ......+.++..... ..-..+.+.+|+..++.++...|.+......+.++|..+|-...|
T Consensus 404 a~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGI--GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHCSSCSSTT--HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCCCHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHH
T ss_conf 987097624468889--999988999999764010022475799999999999974999789999999999985149999
Q ss_pred HHHHHHC
Q ss_conf 9999851
Q 001799 527 YEWYKAL 533 (1011)
Q Consensus 527 ~~~~~~L 533 (1011)
.+.|...
T Consensus 482 ~~~~~~a 488 (537)
T 3fp2_A 482 IELFEDS 488 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999999
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=1.00 E-value=1 Score=154.33 Aligned_cols=241 Identities=13% Similarity=0.044 Sum_probs=199.5
Q ss_pred HHCCCHHHHHH-HHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 98399899999-9999997399999----999999999998799489999999999864107899991999999999999
Q 001799 23 IDSRQFKNALK-QSTALLAKYPNSP----YALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 23 ld~gn~KqAL~-l~eklLKk~P~~~----~a~aLKA~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~il~ 97 (1011)
.-.|+|.+|+. .++++++..|+++ ..+..+|.++.+.|++++|+..++++++. .|.+..++..+|.++.
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQA 109 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH
T ss_conf 7898888987455448871388996422689999999999878999999999999986------8898899999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH----------------HH
Q ss_conf 86998999999999998479998889999999999269999999999999980992999999----------------99
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWA----------------VC 161 (1011)
Q Consensus 98 ~lg~~deAi~~yekAik~~P~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~~Wa----------------i~ 161 (1011)
..|++++|+..|+++++.+|++.+++..++.++...+++.+|...+.++.+..|+... .|. ..
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC---------------CTT
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHCCCHHHHHH
T ss_conf 8757999999999997439877899999999999868889999999999984967679-999899876541143789998
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 999998428968899999999999888329999--799999999999986996899999995230658874999999999
Q 001799 162 SIQLQVLCGNGGEKLLLLAEGLLKKHVASHSLH--EPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGR 239 (1011)
Q Consensus 162 sl~Lq~~~~~~a~kll~LAek~Lekai~~~p~~--~~eel~ll~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~A~ 239 (1011)
+.++. ..-+..|...+++++...| . ....+..++.++..+|++++|+..++..+.. .|..+..+...|.
T Consensus 189 ~~~~~-------~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~ 259 (368)
T 1fch_A 189 GSLLS-------DSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGA 259 (368)
T ss_dssp HHHHH-------HHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHH-------CCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
T ss_conf 88860-------6557999999999997596-7545789999999999847899999999999986-9678999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 9998699999999999999969999999999999973158
Q 001799 240 LLARQGDYTAAAQIYKKILELSPDDWECFLHYLGCLLEDD 279 (1011)
Q Consensus 240 ll~klg~~eeA~~~~~klL~~nPDdw~~~~~ll~all~~~ 279 (1011)
++...|++++|...++++++.+|++..++..+..++...+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 9998699899999999998729885999999999999879
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=153.99 Aligned_cols=246 Identities=15% Similarity=0.073 Sum_probs=163.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 999998399899999999999739999999999999999879-9489999999999864107899991999999999999
Q 001799 19 IWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMG-KCDESLSVSLQAKDLLYQNDSTLMDDLTLSTLQIVFQ 97 (1011)
Q Consensus 19 I~dald~gn~KqAL~l~eklLKk~P~~~~a~aLKA~iL~rlg-k~eEAl~ll~~alelL~~d~~~P~D~~al~~Lg~il~ 97 (1011)
+..++..|++++|+..++++++.+|+++.++...|.++...| ++++|+..++++++. .|.+..++..+|.++.
T Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 63 IGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH
T ss_conf 9999986357999999999987386878999999999998506599999999999985------8765899999999999
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 86998999999999998479998889999999999269999999999999980992999999999999984289688999
Q 001799 98 RLDRLDLATSCYEYACGKYHNNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLCGNGGEKLL 177 (1011)
Q Consensus 98 ~lg~~deAi~~yekAik~~P~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~~~~a~kll 177 (1011)
..|++++|+..|+++++..|++...+..++.++...+++.+|...+.++.+..|++.. .|..++..+. ..+ ..+.+.
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~-~~~-~~~~A~ 213 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPF-VMHEVGVVAF-QNG-EWKTAE 213 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-HHHHHHHHHH-HTT-CHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHH-HCC-CHHHHH
T ss_conf 7357999999999999865332899999899999986499999999999976878749-9999999999-855-699999
Q ss_pred HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 99999999888329-----9997999999999999869968999999952306588749999999999998699999999
Q 001799 178 LLAEGLLKKHVASH-----SLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTAAAQ 252 (1011)
Q Consensus 178 ~LAek~Lekai~~~-----p~~~~eel~ll~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg~~eeA~~ 252 (1011)
....+.++...... + .....+..++.++..+|++++|++.++..+.. .|.....+...|.++...|++++|..
T Consensus 214 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 214 KWFLDALEKIKAIGNEVTVD-KWEPLLNNLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHHTTTSCSCTTT-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999735105422224-79999999999999854879999999999861-83646999998899998605999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999996999999999999997
Q 001799 253 IYKKILELSPDDWECFLHYLGCL 275 (1011)
Q Consensus 253 ~~~klL~~nPDdw~~~~~ll~al 275 (1011)
.++++++.+|++...+..+..++
T Consensus 292 ~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 292 YFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999754987468999999999
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=1.00 E-value=1 Score=152.09 Aligned_cols=222 Identities=16% Similarity=0.111 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 76699999999839989999999999973999999999999999987994899999999998641078999919999999
Q 001799 13 ERRVRPIWDAIDSRQFKNALKQSTALLAKYPNSPYALALKALVLERMGKCDESLSVSLQAKDLLYQNDSTLMDDLTLSTL 92 (1011)
Q Consensus 13 eRrl~~I~dald~gn~KqAL~l~eklLKk~P~~~~a~aLKA~iL~rlgk~eEAl~ll~~alelL~~d~~~P~D~~al~~L 92 (1011)
+-.+.....++..|++.+|+..++++++.+|+++.++..+|.++.+.|++++|+..++++++. .|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l 77 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL------KMDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCCCCHHHHHH
T ss_conf 889987999987589999999999998619656999999999999734779999999999986------89964699999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9999986998999999999998479---9988899999999992699999999999999809929999999999999842
Q 001799 93 QIVFQRLDRLDLATSCYEYACGKYH---NNMDHMMGLFNCYVREYSFVKQQQTAIKMYKHAGEERFLLWAVCSIQLQVLC 169 (1011)
Q Consensus 93 g~il~~lg~~deAi~~yekAik~~P---~n~el~~~Lf~ay~r~~d~~~Aqq~a~kL~K~~P~~ry~~Wai~sl~Lq~~~ 169 (1011)
|.++...|++++|...|+++++.+| ++.+.+..++..+.... .+.....+. ..
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~--~~ 133 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR----------------------LRSQALDAF--DG 133 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHH--HT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHH--HC
T ss_conf 999998378599999999998639766671889999999999999----------------------999999998--72
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 89688999999999998883299997999999999999869968999999952306588749999999999998699999
Q 001799 170 GNGGEKLLLLAEGLLKKHVASHSLHEPEALIVYISILEQQSKYGDALEILSGTLGSLLVIEVDKLRMQGRLLARQGDYTA 249 (1011)
Q Consensus 170 ~~~a~kll~LAek~Lekai~~~p~~~~eel~ll~~IL~~qgk~eEAL~~L~~~l~~~~~~~~~~l~l~A~ll~klg~~ee 249 (1011)
+ . +..|...+++++...| .+...+..++.++...|++++|++.++..+.. .|..+..+...|.++...|++++
T Consensus 134 ~-~----~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 134 A-D----YTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp T-C----HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHH
T ss_pred C-C----HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 4-7----7999999999997689-96689999999998778999999999999873-97777999999999998498999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 9999999999699999999999
Q 001799 250 AAQIYKKILELSPDDWECFLHY 271 (1011)
Q Consensus 250 A~~~~~klL~~nPDdw~~~~~l 271 (1011)
|...++++++.+|++...+..+
T Consensus 207 A~~~~~~a~~~~~~~~~~~~~~ 228 (359)
T 3ieg_A 207 SLSEVRECLKLDQDHKRCFAHY 228 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999985185645899999
Done!