BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001800
(1011 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DSD|A Chain A, Crystal Structure Of P. Furiosus Mre11-H85s Bound To A
Branched Dna And Manganese
pdb|3DSD|B Chain B, Crystal Structure Of P. Furiosus Mre11-H85s Bound To A
Branched Dna And Manganese
Length = 349
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 636 ETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIF 695
ETS SGS V PG+ E G + + I F E + F+ + KPR +++
Sbjct: 212 ETSYSGSPVVYPGSLERWDF-GDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKV 270
Query: 696 DKYVQ-----APKSVKQAFHRHIPIL 716
++ + + +++A R IP++
Sbjct: 271 RPFIDVKIKGSEEEIRKAIKRLIPLI 296
>pdb|3DSC|A Chain A, Crystal Structure Of P. Furiosus Mre11 Dna Synaptic
Complex
Length = 349
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 636 ETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIF 695
ETS SGS V PG+ E G + + I F E + F+ + KPR +++
Sbjct: 212 ETSYSGSPVVYPGSLERWDF-GDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKV 270
Query: 696 DKYVQ-----APKSVKQAFHRHIPIL 716
++ + + +++A R IP++
Sbjct: 271 RPFIDVKIKGSEEEIRKAIKRLIPLI 296
>pdb|4HD0|A Chain A, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT
BLOCKS DNA Double-Strand Break Repair
pdb|4HD0|B Chain B, Mre11 Atld1718 MUTATION RETAINS TEL1ATM ACTIVITY BUT
BLOCKS DNA Double-Strand Break Repair
Length = 339
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 636 ETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIF 695
ETS SGS V PG+ E G + + I F E + F+ + KPR +++
Sbjct: 218 ETSYSGSPVVYPGSLERWDF-GDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKV 276
Query: 696 DKYVQ-----APKSVKQAFHRHIPIL 716
++ + + +++A R IP++
Sbjct: 277 RPFIDVKIKGSEEEIRKAIKRLIPLI 302
>pdb|1W9C|A Chain A, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
pdb|1W9C|B Chain B, Proteolytic Fragment Of Crm1 Spanning Six C-Terminal Heat
Repeats
Length = 321
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 894 PTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALN 950
P + D V E +++K P+ F + H FP L +PP Q + L+
Sbjct: 114 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLD 170
>pdb|3GJX|A Chain A, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|D Chain D, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3NBY|A Chain A, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|D Chain D, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|A Chain A, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|D Chain D, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC1|A Chain A, Crystal Structure Of The Crm1-Rangtp Complex
Length = 1073
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 894 PTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALN 950
P + D V E +++K P+ F + H FP L +PP Q + L+
Sbjct: 822 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLD 878
>pdb|1S8E|A Chain A, Crystal Structure Of Mre11-3
pdb|1S8E|B Chain B, Crystal Structure Of Mre11-3
Length = 333
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 636 ETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIF 695
ETS SGS V PG+ E G + + I F E + F+ + KPR +++
Sbjct: 212 ETSYSGSPVVYPGSLERWDF-GDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKV 270
Query: 696 DKYVQ-----APKSVKQAFHRHIPIL 716
++ + + +++A R IP++
Sbjct: 271 RPFIDVKIKGSEEEIRKAIKRLIPLI 296
>pdb|1II7|A Chain A, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
pdb|1II7|B Chain B, Crystal Structure Of P. Furiosus Mre11 With Manganese And
Damp
Length = 333
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 636 ETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSLFFALCTKKPRLLQLIF 695
ETS SGS V PG+ E G + + I F E + F+ + KPR +++
Sbjct: 212 ETSYSGSPVVYPGSLERWDF-GDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKV 270
Query: 696 DKYVQ-----APKSVKQAFHRHIPIL 716
++ + + +++A R IP++
Sbjct: 271 RPFIDVKIKGSEEEIRKAIKRLIPLI 296
>pdb|3GB8|A Chain A, Crystal Structure Of Crm1SNURPORTIN-1 Complex
Length = 1071
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 894 PTLVDFVMEILSKLVSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALN 950
P + D V E +++K P+ F + H FP L +PP Q + L+
Sbjct: 820 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLD 876
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,374,270
Number of Sequences: 62578
Number of extensions: 919326
Number of successful extensions: 2256
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2250
Number of HSP's gapped (non-prelim): 11
length of query: 1011
length of database: 14,973,337
effective HSP length: 108
effective length of query: 903
effective length of database: 8,214,913
effective search space: 7418066439
effective search space used: 7418066439
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)