BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001800
(1011 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80X82|SYMPK_MOUSE Symplekin OS=Mus musculus GN=Sympk PE=1 SV=1
Length = 1284
Score = 253 bits (647), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 176/610 (28%), Positives = 309/610 (50%), Gaps = 74/610 (12%)
Query: 381 LTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDA--DEDIVMMLQKYV 438
LT+ + ++++ AV+RI + K + + +Q R+ +LA L+ Q D+ +++ + + V
Sbjct: 553 LTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGFKAEVLSFILEDV 612
Query: 439 VANYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKS 498
A +L LY + +++ +S YE L+ + L + D
Sbjct: 613 RARL------DLAFAWLYQEYNAYLAA---GTSGTLDKYEDCLICLLSGLQEKPDQKDGI 663
Query: 499 FSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQ 558
F++++ E P++ +S L+++ C D R G+ + LI RP +
Sbjct: 664 FTKVVLEAPLITESALEVIRKYCE------------DESRAYLGMSTLGDLIFKRPSRQF 711
Query: 559 ACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHS-SNLE 617
L + L ++H +D +R++A+ + ++Y+ + E +E++A N + V+ + S L
Sbjct: 712 QYLHVLLDLSSHEKDRVRSQALLFI-KRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLF 770
Query: 618 CSQSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLT 677
+ D+ +V+ P T E ++
Sbjct: 771 GADKDT-------------------EVAAPWTEET--------------------VKQCL 791
Query: 678 SLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQG 737
L+ AL + +L+ + Y +A +K+ R I IR +G + ELL ++ + P+G
Sbjct: 792 YLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKG 851
Query: 738 SENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLV 797
+E L+T L LT + PS +L+ V+ LY +L D LIP+L+ L K EV+ P+L+
Sbjct: 852 AETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLI 911
Query: 798 DL-PL---EKFQMALA-HILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSA 852
L P+ E F L +G++ P L P E+L+A+H+I + +K I A +
Sbjct: 912 KLNPIVVKEVFNRLLGTQHGEGNSALSP-LNPGELLIALHNI--DSVKCDMKSIIKATNL 968
Query: 853 CFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQV 912
CF +R V+T +VLA + Q+++Q+PLP+L MRTVIQ++ +P L FVM IL++L+ KQV
Sbjct: 969 CFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILARLIMKQV 1028
Query: 913 WRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQ--PSLKS 970
W+ PK+W GF+KC +T+P SF V+L+LPP QL + +K LR PL + P ++
Sbjct: 1029 WKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQA 1088
Query: 971 SIPRSILAVL 980
IP SI+ +L
Sbjct: 1089 HIPNSIMTIL 1098
>sp|Q92797|SYMPK_HUMAN Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2
Length = 1274
Score = 252 bits (643), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 181/615 (29%), Positives = 309/615 (50%), Gaps = 84/615 (13%)
Query: 381 LTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVA 440
LT+ + ++++ AV+RI + K + + +Q R+ +LA L+ Q ++ L+ V++
Sbjct: 553 LTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFNSG------LKAEVLS 606
Query: 441 NYQEQKGHELVLHILYHLQSLMISSSNENSSYAAA-------VYEKLLLAVAKSLLDTFP 493
E L L + Q E ++Y AA YE L+ + L +
Sbjct: 607 FILEDVRARLDLAFAWLYQ--------EYNAYLAAGASGSLDKYEDCLIRLLSGLQEKPD 658
Query: 494 ASDKSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGR 553
D F++++ E P++ +S L+++ C D R G+ + LI R
Sbjct: 659 QKDGIFTKVVLEAPLITESALEVVRKYCE------------DESRTYLGMSTLRDLIFKR 706
Query: 554 PYYRQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHS 613
P + L + L ++H +D++R++A+ L ++Y+ + E +E++A N + V+ +
Sbjct: 707 PSRQFQYLHVLLDLSSHEKDKVRSQAL-LFIKRMYEKEQLREYVEKFALNYLQLLVHPNP 765
Query: 614 -SNLECSQSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPE 672
S L + D+ +V+ P T E
Sbjct: 766 PSVLFGADKDT-------------------EVAAPWTEET-------------------- 786
Query: 673 AQRLTSLFFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIIS 732
++ L+ AL + +L+ + Y +A +K+ R I IR +G + ELL ++
Sbjct: 787 VKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVE 846
Query: 733 DPPQGSENLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPI 792
+ P+G+E L+T L LT + PS +L+ V+ LY +L D LIP+L+ L K EV+
Sbjct: 847 NCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQA 906
Query: 793 FPRLVDL-PL---EKFQMALA-HILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKIT 847
P+L+ L P+ E F L +G++ P L P E+L+A+H+I + +K I
Sbjct: 907 LPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSP-LNPGELLIALHNI--DSVKCDMKSII 963
Query: 848 DACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKL 907
A + CF +R V+T +VLA + Q+++Q+PLP+L MRTVIQ++ +P L FVM ILS+L
Sbjct: 964 KATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRL 1023
Query: 908 VSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATYASQ-- 965
+ KQVW+ PK+W GF+KC +T+P SF V+L+LPP QL + +K LR PL +
Sbjct: 1024 IMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVRSFT 1083
Query: 966 PSLKSSIPRSILAVL 980
P ++ IP SI+ +L
Sbjct: 1084 PHQQAHIPNSIMTIL 1098
>sp|Q7ZYV9|SYMPK_XENLA Symplekin OS=Xenopus laevis GN=sympk PE=1 SV=1
Length = 1202
Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 188/607 (30%), Positives = 309/607 (50%), Gaps = 71/607 (11%)
Query: 381 LTEEEQKSVRTFAVERIFESYKHLQGAECSQTRMGLLARLIAQIDADEDIVMMLQKYVVA 440
LT+ + KS++ AV RI ++ + + + SQ R+ +LARL+ Q+D + ++ V++
Sbjct: 547 LTDVQIKSLKLGAVRRILQAERSVGSSGASQMRVKVLARLVTQLD------ISVKAEVLS 600
Query: 441 NYQEQKGHELVLHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASDKSFS 500
++ L L + + Q S Y++ L+ + L + D F+
Sbjct: 601 HFLNDPRMRLDLALAWLYQEY----CEYQSGAGEEGYQECLIGILTGLQERPDQRDGVFT 656
Query: 501 RLLGEVPVLPDSVLQLLGNLCSSAVFDLHGKEVRDGERVTQGLGAVWSLILGRPYYRQAC 560
+++ E P+L DS L +L C D R G+ + LIL RP +
Sbjct: 657 KVVLEAPLLTDSALDVLRKYCE------------DEGRSYLGMSTLRDLILTRPARQFQY 704
Query: 561 LDIALKSAAHSQDEIRAKAIRLVSNKLYQLSYITENIEQYATNMMLSAVNQHS-SNLECS 619
L + L ++H +D+IR +++ + ++Y+ + IE++A N + V+ + S L +
Sbjct: 705 LHLLLDLSSHEKDKIRQQSLHFI-KRMYEKESLRPYIEKFALNYLQLLVHPNPPSVLFGA 763
Query: 620 QSDSADLKAEGEVGSQETSISGSQVSEPGTFEMDSVKGGQPISHSLSTISFPEAQRLTSL 679
D+ +V+ P T D+VK + L
Sbjct: 764 DKDT-------------------EVAAPWT--EDTVK------------------QCLYL 784
Query: 680 FFALCTKKPRLLQLIFDKYVQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSE 739
+ AL + +L+ + Y +A +K+ R I IR +G + ELL ++ + P+G+E
Sbjct: 785 YLALLPQNHKLIHELASVYTEATADIKRTVLRVIETPIRGMGMNSPELLLLVENCPKGAE 844
Query: 740 NLLTLVLQILTQETTPSSDLIATVKHLYETKLKDATILIPMLSSLTKNEVLPIFPRLVDL 799
L+T L ILT + PS +L+ V+ LY +L D LIP+L+ L K EV+ P+L+ L
Sbjct: 845 TLVTRCLHILTDKVPPSPELVKRVRELYHKRLPDVRFLIPVLNGLDKKEVIQALPKLIKL 904
Query: 800 -PL---EKFQMALAHILQGSAHTGPALTPVEVLVAIHDIVPEREGLALKKITDACSACFE 855
P+ E F L + + LTP ++LVA+H+I + +K + A + CF
Sbjct: 905 NPIVVKEVFNRLLGTQHGEVSSSLSPLTPGDLLVALHNI--DSSKCDMKSVIKATNLCFS 962
Query: 856 QRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPTLVDFVMEILSKLVSKQVWRM 915
R+V+T +VLA L Q++D TPLP+L MRTVIQA+ +P L F+M IL++L+ KQVW+
Sbjct: 963 ARSVYTSEVLAVVLQQLMDTTPLPMLLMRTVIQALGMYPRLGGFIMNILTRLIYKQVWKY 1022
Query: 916 PKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALNKYANLRGPLATY--ASQPSLKSSIP 973
PK+W GF+KC +T+P SF VLL+LPPPQL S L +LR PL + A P + +P
Sbjct: 1023 PKVWEGFIKCCQRTKPQSFSVLLQLPPPQLLSVLQTSPDLRDPLLAHVRAFTPHQLAHVP 1082
Query: 974 RSILAVL 980
SI+A+L
Sbjct: 1083 HSIMAIL 1089
>sp|Q10222|PTA1_SCHPO mRNA cleavage and polyadenylation specificity factor complex
subunit pta1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pta1 PE=1 SV=2
Length = 670
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 434 LQKYVVANYQEQKGHELVLHIL---YHLQSLMISSSN----ENSSYAAAVYEKLLLAVAK 486
L YV +N++ L+L+ L ++ LM+ + + E+ + YEK L V
Sbjct: 554 LFTYVASNWRSSTN--LILNWLSEEWYNDRLMLENPDCHEYEDVKWEGPQYEKWALKVID 611
Query: 487 SLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLC 521
S+L A DK F + E+P L D+++ + +C
Sbjct: 612 SILPYLEAKDKVFMIFMSELPELTDAIVDKIKFVC 646
>sp|Q9NUL7|DDX28_HUMAN Probable ATP-dependent RNA helicase DDX28 OS=Homo sapiens GN=DDX28
PE=1 SV=2
Length = 540
Score = 33.9 bits (76), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 699 VQAPKSVKQAFHRHIPILIRALGSSCSELLHIISDPPQGSENLLTLVLQILTQETTPSSD 758
+ AP+ + R + +RA+ L ++ +G + + LQ+ Q PS+D
Sbjct: 201 IPAPRGLVLVPSRELAQQVRAVAQPLGRSLGLLVRDLEGGHGMRRIRLQLSRQ---PSAD 257
Query: 759 -LIATVKHLYETKLKDATILIPMLSSLTKNEVLPI----FPRLVDLPLEKFQMALAHILQ 813
L+AT L++ LK I + LS L +E + F LVD LEK +HI +
Sbjct: 258 VLVATPGALWKA-LKSRLISLEQLSFLVLDEADTLLDESFLELVDYILEK-----SHIAE 311
Query: 814 GSAHTGPALTPVEVLVAIHDIVPEREGLALKKI 846
G A P LV + PE G L K+
Sbjct: 312 GPADLEDPFNPKAQLVLVGATFPEGVGQLLNKV 344
>sp|O94522|RSC7_SCHPO Chromatin structure-remodeling complex subunit rsc7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rsc7 PE=1 SV=1
Length = 390
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 939 KLPPPQLESALNKYANLRGPLATYASQPSLKSSIP 973
KLPPP + N+Y G A Y QPSL++ +P
Sbjct: 226 KLPPPGMPYNRNQYVAWHGASAVYHPQPSLEAQLP 260
>sp|O29119|PGK_ARCFU Phosphoglycerate kinase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pgk PE=3 SV=1
Length = 407
Score = 33.9 bits (76), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Query: 416 LLARLIAQIDADEDIVMMLQKYVVANYQEQKGHELVL--HILYHLQSLMISSSNENSSYA 473
LL + + ID + K V+ +E + E++L ++ ++ + + S+ E++
Sbjct: 82 LLGKRVEYIDE------IFSKGVLRRIKEMENGEVILLENVRFYSEEQLNRSAEEHAE-- 133
Query: 474 AAVYEKLLLAVAKSLLDTFPASDKSFSRLLGEVPVLPDSVLQLLGNLCSS---------- 523
+ KL A + D F AS +S + L+G VPVLP V +L+ N ++
Sbjct: 134 CHMVRKLSTAFDLFVNDAFSASHRSHASLVGFVPVLPSVVGRLVENEVTALSKPLKGEGR 193
Query: 524 AVFDLHGKEVRDGERVTQ 541
+F L G +++D +V +
Sbjct: 194 KIFVLGGAKIKDSVKVLK 211
>sp|Q12664|CP51_PENIT Eburicol 14-alpha-demethylase OS=Penicillium italicum GN=CYP51 PE=3
SV=1
Length = 515
Score = 33.5 bits (75), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 22/176 (12%)
Query: 93 PVEQMIAMIAALLAEGERGAESLE---LLISNIHPDLLADIVISNMKHLHKTPPPLTR-- 147
P +++ M+ LL G+ + ++ LL P++ + +K+L PPL
Sbjct: 290 PDKEIAHMMITLLMAGQHSSSAISCWILLRLASQPEMAEKLHAEQIKNLGADLPPLQYKD 349
Query: 148 LGNLPVTRQIGSLSSPAQVVVLPSQINTMQSSLLTAQVQLPSSVAAISSSLSDTATGNTS 207
+ LP+ R + + + L S I+T L +V+ P V + + T +S
Sbjct: 350 MDKLPLLRNV-----IKETLRLHSSIHT-----LMRKVKNPMPVPGTDFVVPPSHTLLSS 399
Query: 208 ATDSKRDPR--RDPRRLDPRRVATPVGVPSISTTEDAGPVQSEFDDSSSITRPPSL 261
+ RD R RDP R DP R + V V S T D G + S TR P L
Sbjct: 400 PGVTARDERHFRDPLRWDPHRWESRVEVEDSSDTVDYG-----YGAVSKGTRSPYL 450
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 351,306,664
Number of Sequences: 539616
Number of extensions: 14166955
Number of successful extensions: 43396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 42687
Number of HSP's gapped (non-prelim): 615
length of query: 1011
length of database: 191,569,459
effective HSP length: 128
effective length of query: 883
effective length of database: 122,498,611
effective search space: 108166273513
effective search space used: 108166273513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)