Query 001800
Match_columns 1011
No_of_seqs 178 out of 213
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 15:48:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001800.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1098-1102//hhsearch_pdb/001800hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u0r_A Apoptosis inhibitor 5; 1.0 1 1 23.8 8.7 150 452-609 7-186 (507)
2 2vgl_B AP-2 complex subunit be 1.0 1 1 18.5 9.9 21 700-720 293-313 (591)
3 1w9c_A CRM1 protein, exportin 1.0 1 1 17.6 6.2 26 558-583 166-191 (321)
4 1ho8_A Vacuolar ATP synthase s 1.0 1 1 17.0 12.3 27 743-769 321-347 (480)
5 4hat_C Exportin-1; heat repeat 1.0 1 1 16.6 5.1 69 880-950 777-852 (1023)
6 2vdw_B MRNA-capping enzyme sma 1.0 1 1 15.3 -1.5 16 408-423 184-199 (287)
7 2ld7_B Paired amphipathic heli 1.0 1 1 15.0 2.3 48 914-965 23-72 (75)
8 3tjz_B Coatomer subunit gamma; 1.0 1 1 14.9 10.2 44 546-590 125-169 (355)
9 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 14.9 4.5 30 690-719 147-176 (249)
10 3ljb_A Interferon-induced GTP- 1.0 1 1 14.5 0.4 19 669-687 208-226 (271)
No 1
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=1.00 E-value=1 Score=23.84 Aligned_cols=150 Identities=16% Similarity=0.259 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 999999998977135789870267899999999998522699870---27988661399999999999996103753346
Q 001800 452 LHILYHLQSLMISSSNENSSYAAAVYEKLLLAVAKSLLDTFPASD---KSFSRLLGEVPVLPDSVLQLLGNLCSSAVFDL 528 (1011)
Q Consensus 452 L~WLyEEys~~~~~~~~~s~~~~~~Ye~~Ll~LL~~L~~~l~~kD---klf~RLLlElP~Lt~~aL~~Lk~lC~~~~~~~ 528 (1011)
++-||+-|....... +.-+.....|.. ++++.-.....|. -.+.||.-.-|.+-+.+++.+-++|+++....
T Consensus 7 ie~LY~~~~~L~da~-dk~~~~~~~y~~----Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~I 81 (507)
T 3u0r_A 7 VEELYRNYGILADAT-EQVGQHKDAYQV----ILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSI 81 (507)
T ss_dssp HHHHHHHHHHHHHTG-GGGGGGHHHHHH----HHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999864753234-441003899999----998527977999999988999986482568999999988871544889
Q ss_pred C----------CCC-------------C--CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 7----------864-------------4--68313664799999999439810699999998620278289999999999
Q 001800 529 H----------GKE-------------V--RDGERVTQGLGAVWSLILGRPYYRQACLDIALKSAAHSQDEIRAKAIRLV 583 (1011)
Q Consensus 529 ~----------~k~-------------~--~DpeRv~lGL~tLr~LIl~RPp~R~~~L~iLL~ls~he~e~vR~~AIklv 583 (1011)
- -|+ + .|+.-...-=.+|..|.-.-| ...|..++......+|.+|.++++.+
T Consensus 82 R~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp---k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 82 RRQAIKELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDA---KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999997257775510020589999999842445999999999999993084---87899999987045368899999999
Q ss_pred HHHCCCCC--HHHHHHHHHHHHHHHHHH
Q ss_conf 99801630--246999999999999851
Q 001800 584 SNKLYQLS--YITENIEQYATNMMLSAV 609 (1011)
Q Consensus 584 ~k~Ly~~~--~l~~~Ie~FA~~~L~~l~ 609 (1011)
..++..++ .+...+|.|-...+..+.
T Consensus 159 ~~kl~~l~~~~l~~E~E~~i~~~ikK~L 186 (507)
T 3u0r_A 159 STKLKTLPDEVLTKEVEELILTESKKVL 186 (507)
T ss_dssp HHHGGGSCTTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCHHHCCHHHHHHHHHHHHHHH
T ss_conf 9997413432212889999999999872
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=18.47 Aligned_cols=21 Identities=14% Similarity=0.248 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 096889999996518989861
Q 001800 700 QAPKSVKQAFHRHIPILIRAL 720 (1011)
Q Consensus 700 ~a~~~VKraV~r~I~~lIR~l 720 (1011)
...+++|.+.++.+..++..-
T Consensus 293 ~~d~~vr~~aL~~l~~i~~~~ 313 (591)
T 2vgl_B 293 SGEPEVQYVALRNINLIVQKR 313 (591)
T ss_dssp TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHC
T ss_conf 699208999999999999869
No 3
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=1.00 E-value=1 Score=17.61 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99999998620278289999999999
Q 001800 558 QACLDIALKSAAHSQDEIRAKAIRLV 583 (1011)
Q Consensus 558 ~~~L~iLL~ls~he~e~vR~~AIklv 583 (1011)
..+++.++=-..|.+.+|-..+++.+
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il 191 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQIL 191 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999999980799836889999999
No 4
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=1.00 E-value=1 Score=17.01 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHC
Q ss_conf 999999705999997899999999750
Q 001800 743 TLVLQILTQETTPSSDLIATVKHLYET 769 (1011)
Q Consensus 743 ~RIL~iLTek~~PS~eLV~~Vk~Ly~~ 769 (1011)
..+|.+|.++.---.||.+-++.|.+.
T Consensus 321 l~~l~~L~~rk~~Dedl~edl~~L~e~ 347 (480)
T 1ho8_A 321 LPTVQSLSERKYSDEELRQDISNLKEI 347 (480)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 689998862898968899999999999
No 5
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=16.64 Aligned_cols=69 Identities=26% Similarity=0.421 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-------HHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHH
Q ss_conf 8899999999982784279999999999-------9632026995058999988420788026775399589999998
Q 001800 880 LLFMRTVIQAIDAFPTLVDFVMEILSKL-------VSKQVWRMPKLWVGFLKCVSQTRPHSFPVLLKLPPPQLESALN 950 (1011)
Q Consensus 880 ~LfMRTVIQal~~yP~L~~FV~nIL~rL-------I~KqVWk~~~lW~GFikCa~~~kP~Sf~vLLqLP~~QL~~~L~ 950 (1011)
+-+|.|++--++. .+.+-+..||..+ |++.-=.+|..-..|.+.+++.--++|.+++++|++++..+++
T Consensus 777 L~l~s~iv~~~~~--~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~ 852 (1023)
T 4hat_C 777 LNCMTTVVEKVGH--MIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVD 852 (1023)
T ss_dssp HHHHHHHHHHHGG--GCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHHHHHH
T ss_conf 9999999998877--410156899999999999998556222949899999999999997769997499999999999
No 6
>2vdw_B MRNA-capping enzyme small subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=1.00 E-value=1 Score=15.31 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHHHHHC
Q ss_conf 4201368898886615
Q 001800 408 ECSQTRMGLLARLIAQ 423 (1011)
Q Consensus 408 G~~~~w~~LLaRLaTR 423 (1011)
.++++|.+==+-++.+
T Consensus 184 ~~sDSWlKDSAimV~s 199 (287)
T 2vdw_B 184 CVSDSWLKDSAIMVAS 199 (287)
T ss_dssp CTTSCSSSCCEEEEEE
T ss_pred CCCCCHHCCCEEEEEC
T ss_conf 1651011241378854
No 7
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=15.04 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHCCC--CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 6995058999988420788--026775399589999998812213689985148
Q 001800 914 RMPKLWVGFLKCVSQTRPH--SFPVLLKLPPPQLESALNKYANLRGPLATYASQ 965 (1011)
Q Consensus 914 k~~~lW~GFikCa~~~kP~--Sf~vLLqLP~~QL~~~L~k~P~Lr~~L~~~~~~ 965 (1011)
.++..|.-|+||....+-+ +-.-|+++ ....+.++|+|-..+.+|+..
T Consensus 23 ~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~----V~~~lg~~pdL~~~Fk~Fl~~ 72 (75)
T 2ld7_B 23 RSAEAYENFLRCLVIFNQEVISRAELVQL----VSPFLGKFPELFNWFKNFLGY 72 (75)
T ss_dssp CSHHHHHHHHHHHHHHHTTCSCHHHHHHH----THHHHTTCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHH----HHHHHCCCHHHHHHHHHHCCC
T ss_conf 89778999999999860068679999999----999984488999999998287
No 8
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=14.92 Aligned_cols=44 Identities=14% Similarity=-0.013 Sum_probs=22.9
Q ss_pred HHHHHHCCCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999439810-6999999986202782899999999999980163
Q 001800 546 VWSLILGRPYY-RQACLDIALKSAAHSQDEIRAKAIRLVSNKLYQL 590 (1011)
Q Consensus 546 Lr~LIl~RPp~-R~~~L~iLL~ls~he~e~vR~~AIklv~k~Ly~~ 590 (1011)
||.|.-.|.+. =+....-+.++-.|.+..||.+|+-.+.+ ||+.
T Consensus 125 LRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~k-L~~~ 169 (355)
T 3tjz_B 125 VRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLH-LLKC 169 (355)
T ss_dssp HHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHH-HTTT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHCC
T ss_conf 99986579789999999999998589989999999999999-9336
No 9
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=14.91 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=10.4
Q ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 079999995009688999999651898986
Q 001800 690 LLQLIFDKYVQAPKSVKQAFHRHIPILIRA 719 (1011)
Q Consensus 690 LL~~Lf~VY~~a~~~VKraV~r~I~~lIR~ 719 (1011)
++..|+.........+|......|...+..
T Consensus 147 ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 147 MLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999987699839999999999999987
No 10
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.54 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHHCCC
Q ss_conf 9789999999998861279
Q 001800 669 SFPEAQRLTSLFFALCTKK 687 (1011)
Q Consensus 669 s~~~vkr~L~LylALc~k~ 687 (1011)
+..++..++.-||..+.++
T Consensus 208 ~~~Ei~~~l~sYf~i~~~r 226 (271)
T 3ljb_A 208 SMEEIFQHLMAYHQEASKR 226 (271)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 2999999999999999999
Done!