BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001801
(1011 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 197/715 (27%), Positives = 293/715 (40%), Gaps = 116/715 (16%)
Query: 290 LGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW--LASFSNLVHISLRSNSLQ--G 345
L ++ GS+ G + SL LDLS N + + L S S L +++ SN+L G
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 346 SITGFLANLSASIEVLDLSSQQLEGQ--IPRSFGRLC-NLREISLSDVKMSQDIS----- 397
++G L S+EVLDLS+ + G + C L+ +++S K+S D+
Sbjct: 140 KVSGGLK--LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 398 --EILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXX 455
E LD+ S+ S TG G ++
Sbjct: 198 NLEFLDVSSNNFS--------TGIPFLGDCSA---------------------------- 221
Query: 456 XXXXERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL-- 513
+ + +S N L G S ++ ++L ++S N VGP IPP L+ L
Sbjct: 222 ---LQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQF---VGP--IPPLPLKSLQYLS 272
Query: 514 --QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEI 571
++ G F + + L LD+S + VP F S SN+ +GE+
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGEL 331
Query: 572 P--NLSKATGLRTVDLSSNNLSGTLPL----ISFQLESIDLSNNAFSGSISPVLCNGMRG 625
P L K GL+ +DLS N SG LP +S L ++DLS+N FSG I P LC +
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 626 ELQVLNLENNSFSGEIPDCWMN----------FLYLRVXXXXXXXXXXXXXXXXXXXXXX 675
LQ L L+NN F+G+IP N F YL
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 676 XXXXXQK--------------NSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
Q+ N L+G IP LSNC L +++ N+ +G+IP WIG +
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RL 510
Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
++ IL L +N F G P EL SL LDL N +G IP + S + ++ G
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 782 THPGITDCSLYRSC----------------LPRPRSFSDPIEKAFLVMKGKELEYSTILY 825
+ I + + + C L R S +P V G
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
+ +D+S N SG IP E+ + L LNL +N SG IPD +G ++ + ++D S+N+L
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 886 SEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGN-DLCGSPLSR 939
IP+ G IP Q ++F + F+ N LCG PL R
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 208/781 (26%), Positives = 308/781 (39%), Gaps = 123/781 (15%)
Query: 36 EREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPIS 95
E L+ FK L D N L W+ + C + GV C + ++L PLN
Sbjct: 10 EIHQLISFKDVLPD-KNLLPDWS---SNKNPCTFDGVTCRDDKVTSIDLS-SKPLN---- 60
Query: 96 YHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQ---HLNYLDLSGNSFGGGIPR 152
+S + + + IN S+ F+ L LDLS NS G +
Sbjct: 61 -----VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 115
Query: 153 F--LGSMGKLKYLNLSGA--GFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWL--PGL 206
LGS LK+LN+S F G + L L+ L+ LDL NS + + W+ G
Sbjct: 116 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGC 174
Query: 207 SLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISSISVLDLSS 266
L+HL + G + D S +N + LD+SS
Sbjct: 175 GELKHLAISGNKISGDVDVSRCVN----------------------------LEFLDVSS 206
Query: 267 NQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW 326
N F S + ++ S L +LD+ N G + T L+ L++S N F IP
Sbjct: 207 NNF---STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 327 LASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREIS 386
+L ++SL N G I FL+ ++ LDLS G +P FG L ++
Sbjct: 264 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 321
Query: 387 LSDVKMSQDISEILDIFSSCISDR-LESWDMTGCKIFGHLTSQIGHF-KSLDSLFLSHNX 444
LS S ++ + + R L+ D++ + G L + + SL +L LS N
Sbjct: 322 LSSNNFSGELP-----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 376
Query: 445 XXXXXXXXXXXXXXXERVVLSN--NTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDW 502
+L N K L E++L N N T K+ P
Sbjct: 377 FSGP--------------ILPNLCQNPKNTLQELYLQN-----------NGFTGKIPPTL 411
Query: 503 IPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF-WEASPQLYFLN 561
+L L L +L T P L S + L L + + ++ +P + + + L+
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 562 FSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLES---IDLSNNAFSGSISP 617
F++ + GEIP+ LS T L + LS+N L+G +P +LE+ + LSNN+FSG+I
Sbjct: 472 FND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 618 VLCNGMRGELQVLNLENNSFSGEIPDCWM--------NFLY-LRVXXXXXXXXXXXXXXX 668
L G L L+L N F+G IP NF+ R
Sbjct: 530 EL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 587
Query: 669 XXXXXXXXXXXXQKNSLSGRIP-------------ESLSNCNRLVSLNMDGNQFSGDIPT 715
Q N LS R P + N ++ L+M N SG IP
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 716 WIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTV 775
IG + ILNL N G P E+ L L ILDL N L G IP+ +S L+ + +
Sbjct: 648 EIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 706
Query: 776 D 776
D
Sbjct: 707 D 707
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 24/259 (9%)
Query: 124 GKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK 183
G+I L + +LN++ LS N G IP+++G + L L LS F G IP +LG+
Sbjct: 477 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 536
Query: 184 LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL-GKAFDW----SLAINXXXXXXXX 238
L +LDL N+ L+ +P Q + + GK + + +
Sbjct: 537 LIWLDL--NTNLFN---GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 239 XXXGC---QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDF 295
G QL+ NI+S +S FD N ++++LD+ N
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG----------SMMFLDMSYNML 641
Query: 296 QGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS 355
G IP + ++ L L+L +ND + SIP+ + L + L SN L G I ++ L+
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 356 ASIEVLDLSSQQLEGQIPR 374
E+ DLS+ L G IP
Sbjct: 702 MLTEI-DLSNNNLSGPIPE 719
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 289 DLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSIT 348
++ S + G N S+ LD+SYN + IP + S L ++L N + GSI
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 349 GFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
+ +L + +LDLSS +L+G+IP++ L L EI LS+ +S I E+
Sbjct: 671 DEVGDLRG-LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 122 FGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
+GG +P+ + + +LD+S N G IP+ +GSM L LNL G IP ++G+L
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 676
Query: 182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL 219
L LDL N +L + L++L +DL NL
Sbjct: 677 RGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNL 713
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 87/237 (36%), Gaps = 47/237 (19%)
Query: 120 SKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIP---- 175
++ G+I + ++L L LS NSF G IP LG L +L+L+ F G IP
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 176 ----------------------------HQLGNLSKLQYLDLVENSELYVDNLSWLPGLS 207
H GNL + Q + + + L N +
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 208 LLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISSISVLDLSSN 267
H N G ++ N L + P I ++ + +L+L N
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYN-------------MLSGYIPKEIGSMPYLFILNLGHN 663
Query: 268 QFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIP 324
D + + V L L LDL SN G IP + LT L +DLS N+ + IP
Sbjct: 664 --DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 197/715 (27%), Positives = 293/715 (40%), Gaps = 116/715 (16%)
Query: 290 LGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW--LASFSNLVHISLRSNSLQ--G 345
L ++ GS+ G + SL LDLS N + + L S S L +++ SN+L G
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 346 SITGFLANLSASIEVLDLSSQQLEGQ--IPRSFGRLC-NLREISLSDVKMSQDIS----- 397
++G L S+EVLDLS+ + G + C L+ +++S K+S D+
Sbjct: 143 KVSGGLK--LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 398 --EILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXX 455
E LD+ S+ S TG G ++
Sbjct: 201 NLEFLDVSSNNFS--------TGIPFLGDCSA---------------------------- 224
Query: 456 XXXXERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL-- 513
+ + +S N L G S ++ ++L ++S N VGP IPP L+ L
Sbjct: 225 ---LQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQF---VGP--IPPLPLKSLQYLS 275
Query: 514 --QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEI 571
++ G F + + L LD+S + VP F S SN+ +GE+
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGEL 334
Query: 572 P--NLSKATGLRTVDLSSNNLSGTLPL----ISFQLESIDLSNNAFSGSISPVLCNGMRG 625
P L K GL+ +DLS N SG LP +S L ++DLS+N FSG I P LC +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 626 ELQVLNLENNSFSGEIPDCWMN----------FLYLRVXXXXXXXXXXXXXXXXXXXXXX 675
LQ L L+NN F+G+IP N F YL
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 676 XXXXXQK--------------NSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKF 721
Q+ N L+G IP LSNC L +++ N+ +G+IP WIG +
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RL 513
Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781
++ IL L +N F G P EL SL LDL N +G IP + S + ++ G
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 782 THPGITDCSLYRSC----------------LPRPRSFSDPIEKAFLVMKGKELEYSTILY 825
+ I + + + C L R S +P V G
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
+ +D+S N SG IP E+ + L LNL +N SG IPD +G ++ + ++D S+N+L
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 886 SEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSFDASCFIGN-DLCGSPLSR 939
IP+ G IP Q ++F + F+ N LCG PL R
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 208/781 (26%), Positives = 308/781 (39%), Gaps = 123/781 (15%)
Query: 36 EREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPIS 95
E L+ FK L D N L W+ + C + GV C + ++L PLN
Sbjct: 13 EIHQLISFKDVLPD-KNLLPDWS---SNKNPCTFDGVTCRDDKVTSIDLS-SKPLN---- 63
Query: 96 YHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQ---HLNYLDLSGNSFGGGIPR 152
+S + + + IN S+ F+ L LDLS NS G +
Sbjct: 64 -----VGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTT 118
Query: 153 F--LGSMGKLKYLNLSGA--GFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWL--PGL 206
LGS LK+LN+S F G + L L+ L+ LDL NS + + W+ G
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGC 177
Query: 207 SLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISSISVLDLSS 266
L+HL + G + D S +N + LD+SS
Sbjct: 178 GELKHLAISGNKISGDVDVSRCVN----------------------------LEFLDVSS 209
Query: 267 NQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNW 326
N F S + ++ S L +LD+ N G + T L+ L++S N F IP
Sbjct: 210 NNF---STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 327 LASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREIS 386
+L ++SL N G I FL+ ++ LDLS G +P FG L ++
Sbjct: 267 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 387 LSDVKMSQDISEILDIFSSCISDR-LESWDMTGCKIFGHLTSQIGHF-KSLDSLFLSHNX 444
LS S ++ + + R L+ D++ + G L + + SL +L LS N
Sbjct: 325 LSSNNFSGELP-----MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 445 XXXXXXXXXXXXXXXERVVLSN--NTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDW 502
+L N K L E++L N N T K+ P
Sbjct: 380 FSGP--------------ILPNLCQNPKNTLQELYLQN-----------NGFTGKIPPTL 414
Query: 503 IPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARF-WEASPQLYFLN 561
+L L L +L T P L S + L L + + ++ +P + + + L+
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 562 FSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLES---IDLSNNAFSGSISP 617
F++ + GEIP+ LS T L + LS+N L+G +P +LE+ + LSNN+FSG+I
Sbjct: 475 FND--LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 618 VLCNGMRGELQVLNLENNSFSGEIPDCWM--------NFLY-LRVXXXXXXXXXXXXXXX 668
L G L L+L N F+G IP NF+ R
Sbjct: 533 EL--GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590
Query: 669 XXXXXXXXXXXXQKNSLSGRIP-------------ESLSNCNRLVSLNMDGNQFSGDIPT 715
Q N LS R P + N ++ L+M N SG IP
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 716 WIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTV 775
IG + ILNL N G P E+ L L ILDL N L G IP+ +S L+ + +
Sbjct: 651 EIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709
Query: 776 D 776
D
Sbjct: 710 D 710
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 24/259 (9%)
Query: 124 GKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSK 183
G+I L + +LN++ LS N G IP+++G + L L LS F G IP +LG+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539
Query: 184 LQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL-GKAFDW----SLAINXXXXXXXX 238
L +LDL N+ L+ +P Q + + GK + + +
Sbjct: 540 LIWLDL--NTNLFN---GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 239 XXXGC---QLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDF 295
G QL+ NI+S +S FD N ++++LD+ N
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG----------SMMFLDMSYNML 644
Query: 296 QGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS 355
G IP + ++ L L+L +ND + SIP+ + L + L SN L G I ++ L+
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 356 ASIEVLDLSSQQLEGQIPR 374
E+ DLS+ L G IP
Sbjct: 705 MLTEI-DLSNNNLSGPIPE 722
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 122 FGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNL 181
+GG +P+ + + +LD+S N G IP+ +GSM L LNL G IP ++G+L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 182 SKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNL 219
L LDL N +L + L++L +DL NL
Sbjct: 680 RGLNILDLSSN-KLDGRIPQAMSALTMLTEIDLSNNNL 716
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 88/241 (36%), Gaps = 47/241 (19%)
Query: 116 AYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIP 175
+ ++ G+I + ++L L LS NSF G IP LG L +L+L+ F G IP
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555
Query: 176 --------------------------------HQLGNLSKLQYLDLVENSELYVDNLSWL 203
H GNL + Q + + + L N +
Sbjct: 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615
Query: 204 PGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISSISVLD 263
H N G ++ N L + P I ++ + +L+
Sbjct: 616 TSRVYGGHTSPTFDNNGSMMFLDMSYN-------------MLSGYIPKEIGSMPYLFILN 662
Query: 264 LSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSI 323
L N D + + V L L LDL SN G IP + LT L +DLS N+ + I
Sbjct: 663 LGHN--DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 324 P 324
P
Sbjct: 721 P 721
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 104/261 (39%), Gaps = 22/261 (8%)
Query: 689 IPESLSNCNRLVSLNMDG-NQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTS 747
IP SL+N L L + G N G IP I K + + L + G P L + +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 748 LQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITD-----CSLYRSCLPRPRSF 802
L LD YN LSG +P IS+L +V + + I D L+ S
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 803 SDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFS 862
+ I F + +A +DLS+N G+ V + ++L+ N +
Sbjct: 187 TGKIPPTFANLN------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 863 GRIPDSIGAMKSIEVIDFSNNQLSEEIPRXXXXXXXXXXXXXXXXXXXGEIPTSTQLQSF 922
+ +G K++ +D NN++ +P+ GEIP LQ F
Sbjct: 235 FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 923 DASCFIGND-LCGSPLSRNCT 942
D S + N LCGSPL CT
Sbjct: 294 DVSAYANNKCLCGSPLPA-CT 313
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 279 VFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISL 338
+ L+ L YL + + G+IP L + +L LD SYN + ++P ++S NLV I+
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 339 RSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISE 398
N + G+I + S + +S +L G+IP +F L NL + LS + D S
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215
Query: 399 I------------------LDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFL 440
+ D+ +S L D+ +I+G L + K L SL +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 441 SHN 443
S N
Sbjct: 276 SFN 278
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 127/320 (39%), Gaps = 64/320 (20%)
Query: 32 CIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCK--WSGVVCDNFTG--HVLELRLG 87
C +++ALL+ KKDL +P+ L SW DCC W GV+CD T V L L
Sbjct: 3 CNPQDKQALLQIKKDLGNPTT-LSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLS 58
Query: 88 NPLNHPISYHTSPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFG 147
LN P Y P S+ Y + G I P++ L+YL ++ +
Sbjct: 59 G-LNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 148 GGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN--SELYVDNLSWLPG 205
G IP FL + L L+ S G +P + +L L + N S D+
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG---- 170
Query: 206 LSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISSISVLDLS 265
+ K F S+ I+ +L PP N+ +++ +DLS
Sbjct: 171 ------------SFSKLFT-SMTISRN-----------RLTGKIPPTFANL-NLAFVDLS 205
Query: 266 SNQFDQNSLVL---------------SWVFGL------SNLVYLDLGSNDFQGSIPVGLQ 304
N + ++ VL S F L NL LDL +N G++P GL
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 305 NLTSLRHLDLSYNDFNSSIP 324
L L L++S+N+ IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 56/259 (21%)
Query: 536 DISRSGIQDTVPARFWEASPQLYFLNF-----SNSRINGEIPNLSKATGLRTVDLSSNNL 590
++ SG+ P + L +LNF N+ + P ++K T L + ++ N+
Sbjct: 54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 591 SGTLPLISFQLESI---DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN 647
SG +P Q++++ D S NA SG++ P + + L + + N SG IPD + +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS--LPNLVGITFDGNRISGAIPDSYGS 171
Query: 648 FLYLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXQKNSLSGRIPESLSNCNRLVSLNMDGN 707
F L +N L+G+IP + +N N L +++ N
Sbjct: 172 FSKL-----------------------FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Query: 708 QFSGDIPTWIGEKFSSMVI----------------------LNLRSNIFDGQFPTELCFL 745
GD G ++ I L+LR+N G P L L
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
Query: 746 TSLQILDLGYNNLSGAIPK 764
L L++ +NNL G IP+
Sbjct: 268 KFLHSLNVSFNNLCGEIPQ 286
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 86/205 (41%), Gaps = 40/205 (19%)
Query: 683 NSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIG---EKFSSMVILNLRSNIFDGQFP 739
N+LSG +P S+S+ LV + DGN+ SG IP G + F+SM I N G+ P
Sbjct: 135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI---SRNRLTGKIP 191
Query: 740 TELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRP 799
L +L +DL N L G + S + D H
Sbjct: 192 PTFANL-NLAFVDLSRNMLEG-------DASVLFGSDKNTQKIH---------------- 227
Query: 800 RSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYN 859
+ K L ++ S L +DL N G +P +T L L SLN+S+N
Sbjct: 228 ------LAKNSLAFDLGKVGLSKNL---NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 860 HFSGRIPDSIGAMKSIEVIDFSNNQ 884
+ G IP G ++ +V ++NN+
Sbjct: 279 NLCGEIPQG-GNLQRFDVSAYANNK 302
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 787 TDCSLYR------SCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGE 840
TD YR S L P+ + P A L Y LY+ + NN G
Sbjct: 45 TDTQTYRVNNLDLSGLNLPKPYPIPSSLA-------NLPYLNFLYIGGI-----NNLVGP 92
Query: 841 IPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP 890
IP + L L L +++ + SG IPD + +K++ +DFS N LS +P
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 7/157 (4%)
Query: 500 PDWIPPFQ-LEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLY 558
PD++ + L LD L T P + S L + + I +P + S
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 559 FLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLI---SFQLESIDLSNNAFSGSI 615
+ S +R+ G+IP L VDLS N L G ++ + I L+ N+ + +
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 616 SPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLR 652
V G+ L L+L NN G +P +L
Sbjct: 238 GKV---GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 88/197 (44%), Gaps = 20/197 (10%)
Query: 131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLS--GAGFKGMIPHQLGNLSKLQYLD 188
L + L L + N G + L++L+LS G FKG + L+YLD
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHF 248
L N + + S GL L+HLD NL + ++S+ ++ + H
Sbjct: 380 LSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHT 431
Query: 249 HPPPIVN-----ISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVG 302
H N +SS+ VL ++ N F +N L +F L NL +LDL + P
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 303 LQNLTSLRHLDLSYNDF 319
+L+SL+ L++S+N+F
Sbjct: 490 FNSLSSLQVLNMSHNNF 506
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLG-NLSKLQYLDLVENSE 194
L YLDLS N FLG + +L++L+ + K M + +L L YLD + ++
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-ISHTH 432
Query: 195 LYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIV 254
V GLS L+ L + G + + F + CQL+ P
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 255 NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNL-TSLRHLD 313
++SS+ VL++S N F SL L++L LD N S LQ+ +SL L+
Sbjct: 492 SLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Query: 314 LSYNDF 319
L+ NDF
Sbjct: 550 LTQNDF 555
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 80/209 (38%), Gaps = 37/209 (17%)
Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG--LQNLTSLRH 311
V++ S+ LDLS N FG ++L YLDL F G I + L L H
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEH 400
Query: 312 LDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL--------- 361
LD +++ S + S NL+++ + + + G LS S+EVL
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQE 459
Query: 362 ----------------DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS 405
DLS QLE P +F L SL + MS + LD F
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPY 514
Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKS 434
+ L+ D + I ++ HF S
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG- 760
L M GN F + I + ++ L+L + PT L+SLQ+L++ +NN
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 761 -AIP-KCISNLSAMVTVDYPLG 780
P KC+++L + DY L
Sbjct: 510 DTFPYKCLNSLQVL---DYSLN 528
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 18/189 (9%)
Query: 139 LDLSGNSFGGGIPRFLGSMGKLKYLNLS--GAGFKGMIPHQLGNLSKLQYLDLVENSELY 196
L+L N + +L L+LS G FKG + L+YLDL N +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 197 VDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVN- 255
+ S GL L+HLD NL + ++S+ ++ + H H N
Sbjct: 93 MS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHTHTRVAFNG 144
Query: 256 ----ISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
+SS+ VL ++ N F +N L +F L NL +LDL + P +L+SL+
Sbjct: 145 IFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 311 HLDLSYNDF 319
L++S+N+F
Sbjct: 203 VLNMSHNNF 211
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLG-NLSKLQYLDLVENSE 194
L YLDLS N FLG + +L++L+ + K M + +L L YLD + ++
Sbjct: 80 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-ISHTH 137
Query: 195 LYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIV 254
V GLS L+ L + G + + F + CQL+ P
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFN 196
Query: 255 NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNL-TSLRHLD 313
++SS+ VL++S N F SL L++L LD N S LQ+ +SL L+
Sbjct: 197 SLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254
Query: 314 LSYNDF 319
L+ NDF
Sbjct: 255 LTQNDF 260
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 81/207 (39%), Gaps = 37/207 (17%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG--LQNLTSLRHLD 313
++ ++ L LSSN FG ++L YLDL F G I + L L HLD
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLD 107
Query: 314 LSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL----------- 361
+++ S + S NL+++ + + + G LS S+EVL
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENF 166
Query: 362 --------------DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCI 407
DLS QLE P +F L +L+ ++ MS + LD F
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN-----MSHNNFFSLDTFPYKC 221
Query: 408 SDRLESWDMTGCKIFGHLTSQIGHFKS 434
+ L+ D + I ++ HF S
Sbjct: 222 LNSLQVLDYSLNHIMTSKKQELQHFPS 248
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG- 760
L M GN F + I + ++ L+L + PT L+SLQ+L++ +NN
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
Query: 761 -AIP-KCISNLSAMVTVDYPL 779
P KC+++L + DY L
Sbjct: 215 DTFPYKCLNSLQVL---DYSL 232
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 822 TILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFS 881
T L + +DLS+ P L +L+ LN+S+N+F + S++V+D+S
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231
Query: 882 NNQL 885
N +
Sbjct: 232 LNHI 235
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 20/219 (9%)
Query: 131 LHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLS--GAGFKGMIPHQLGNLSKLQYLD 188
L + L L + N G + L++L+LS G FKG + L+YLD
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHF 248
L N + + S GL L+HLD NL + ++S+ ++ + H
Sbjct: 380 LSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHT 431
Query: 249 HPPPIVN-----ISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVG 302
H N +SS+ VL ++ N F +N L +F L NL +LDL + P
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 303 LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341
+L+SL+ L+++ N S ++L I L +N
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 34/198 (17%)
Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG--LQNLTSLRH 311
V++ S+ LDLS N FG ++L YLDL F G I + L L H
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEH 400
Query: 312 LDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL--------- 361
LD +++ S + S NL+++ + + + G LS S+EVL
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQE 459
Query: 362 ----------------DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS 405
DLS QLE P +F L +L+ ++++ ++ I D +S
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519
Query: 406 CISDRLES--WDMTGCKI 421
L + WD + +I
Sbjct: 520 LQKIWLHTNPWDCSCPRI 537
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 276 LSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLV 334
+S + L+NL YL L N Q S+P G+ LT+L+ L L N S +NL
Sbjct: 78 ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 335 HISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQ 394
++ L N LQ G L+ ++ LDL + QL+ F +L L+++SL+D ++
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLT-NLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 395 DISEILDIFSS 405
+ D +S
Sbjct: 196 VPDGVFDRLTS 206
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 282 LSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
L+NL LDL +N Q S+P G+ LT L+ L L+ N S ++L HI L +
Sbjct: 156 LTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLN 214
Query: 341 N 341
N
Sbjct: 215 N 215
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 43/179 (24%)
Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXX 237
L NL+K+ L+L N + N+S + GL ++ LDL +
Sbjct: 87 LKNLTKITELELSGNP---LKNVSAIAGLQSIKTLDLTSTQITDV--------------- 128
Query: 238 XXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
P+ +S++ VL L NQ +S + GL+NL YL +G+N
Sbjct: 129 -------------TPLAGLSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNNQVND 171
Query: 298 SIPVG-LQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS 355
P+ L LT+LR D +D + LAS NL+ + L+ N Q S LANLS
Sbjct: 172 LTPLANLSKLTTLRADDNKISDISP-----LASLPNLIEVHLKDN--QISDVSPLANLS 223
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 478 LANLSKLVSFDVSGNALTLKVGPDWIPPFQ-LEKLDLQSCHLGPTFPFWLLSQNVLGYLD 536
L NL+K+ ++SGN L I Q ++ LDL S + P LS + YLD
Sbjct: 87 LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 143
Query: 537 ISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP--NLSKATGLRTVDLSSNNLSGTL 594
+++ I + P L +L+ N+++N P NLSK T LR D N +S
Sbjct: 144 LNQ--ITNISPL---AGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADD---NKISDIS 195
Query: 595 PLISF-QLESIDLSNNAFSGSISPV 618
PL S L + L +N S +SP+
Sbjct: 196 PLASLPNLIEVHLKDNQIS-DVSPL 219
Score = 29.6 bits (65), Expect = 9.1, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQ--YL 187
L + + L+LSGN + + +K L+L+ + P L LS LQ YL
Sbjct: 87 LKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 142
Query: 188 DLVENSELYVDNLSWLPGLSLLQHLDLG 215
DL + + N+S L GL+ LQ+L +G
Sbjct: 143 DLNQ-----ITNISPLAGLTNLQYLSIG 165
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 276 LSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLV 334
+S + L+NL YL L N Q S+P G+ LT+L+ L L N S +NL
Sbjct: 78 ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 335 HISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISL 387
+++L N LQ G L+ E LDLS QL+ F +L L+++ L
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTE-LDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 75/193 (38%), Gaps = 25/193 (12%)
Query: 179 GNLSKLQYLDLVENSEL--------------YVDNLSWLPGLSLLQHLDLGGVNLGKAFD 224
NL K D V +EL V + +LP + ++L LGG K D
Sbjct: 24 ANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNV---RYLALGG---NKLHD 77
Query: 225 WSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN 284
S A+ G QL ++++ L L NQ SL L+N
Sbjct: 78 IS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL--QSLPDGVFDKLTN 134
Query: 285 LVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSL 343
L YL+L N Q S+P G+ LT+L LDLSYN S + L + L N L
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193
Query: 344 QGSITGFLANLSA 356
+ G L++
Sbjct: 194 KSVPDGVFDRLTS 206
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 50/238 (21%)
Query: 140 DLSG----NSFGGGIPRFLGS--MGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
DL G ++FG G+ G + L L L + P L NL+K+ L+L N
Sbjct: 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP 96
Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPI 253
+ N+S + GL ++ LDL + P+
Sbjct: 97 ---LKNVSAIAGLQSIKTLDLTSTQITDV----------------------------TPL 125
Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLD 313
+S++ VL L NQ +S + GL+NL YL +G+ P L NL+ L L
Sbjct: 126 AGLSNLQVLYLDLNQITN----ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179
Query: 314 LSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQ 371
N + P LAS NL+ + L++N Q S LAN S ++ ++ L++Q + Q
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNN--QISDVSPLANTS-NLFIVTLTNQTITNQ 232
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 16/145 (11%)
Query: 478 LANLSKLVSFDVSGNALTLKVGPDWIPPFQ-LEKLDLQSCHLGPTFPFWLLSQNVLGYLD 536
L NL+K+ ++SGN L I Q ++ LDL S + P LS + YLD
Sbjct: 81 LKNLTKITELELSGNPLK---NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 137
Query: 537 ISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIP--NLSKATGLRTVDLSSNNLSGTL 594
+++ I + P L +L+ N++++ P NLSK T L+ D N +S
Sbjct: 138 LNQ--ITNISPL---AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD---NKISDIS 189
Query: 595 PLISF-QLESIDLSNNAFSGSISPV 618
PL S L + L NN S +SP+
Sbjct: 190 PLASLPNLIEVHLKNNQIS-DVSPL 213
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLG-NLSKLQYLDLVENSE 194
L YLDLS N FLG + +L++L+ + K M + +L L YLD + ++
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-ISHTH 456
Query: 195 LYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIV 254
V GLS L+ L + G + + F + CQL+ P
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFN 515
Query: 255 NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNL-TSLRHLD 313
++SS+ VL++S N F SL L++L LD N S LQ+ +SL L+
Sbjct: 516 SLSSLQVLNMSHNNF--FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Query: 314 LSYNDF 319
L+ NDF
Sbjct: 574 LTQNDF 579
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 79/209 (37%), Gaps = 37/209 (17%)
Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG--LQNLTSLRH 311
V++ S+ LDLS N FG +L YLDL F G I + L L H
Sbjct: 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS---FNGVITMSSNFLGLEQLEH 424
Query: 312 LDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVL--------- 361
LD +++ S + S NL+++ + + + G LS S+EVL
Sbjct: 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQE 483
Query: 362 ----------------DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSS 405
DLS QLE P +F L SL + MS + LD F
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFFSLDTFPY 538
Query: 406 CISDRLESWDMTGCKIFGHLTSQIGHFKS 434
+ L+ D + I ++ HF S
Sbjct: 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG- 760
L M GN F + I + ++ L+L + PT L+SLQ+L++ +NN
Sbjct: 474 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Query: 761 -AIP-KCISNLSAMVTVDYPLG 780
P KC+++L + DY L
Sbjct: 534 DTFPYKCLNSLQVL---DYSLN 552
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 251 PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLR 310
P I +S + VL LS N+ SL +L YLD+ N Q + + SLR
Sbjct: 70 PDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQN---ISCCPMASLR 124
Query: 311 HLDLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE 369
HLDLS+NDF+ + + + L + L + + +A+L S +LDL S ++
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIK 184
Query: 370 G------QIPRS 375
G QIP +
Sbjct: 185 GGETESLQIPNT 196
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Query: 722 SSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG--AIPKCISNLSAMVTVDYPL 779
SS LN N+F L LQ L L N L + N+S++ T+D L
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 780 G--DTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNF 837
++H C+ S L S + F + K V ++DL NN
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK----------VKVLDL-HNNR 461
Query: 838 SGEIPVEVTDLVALRSLNLSYNHFSGRIPDSI 869
IP +VT L AL+ LN++ N +PD +
Sbjct: 462 IMSIPKDVTHLQALQELNVASNQLKS-VPDGV 492
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQN-LTSLRHLDLS 315
+ + LDL +N SL L++L L LG N Q S+P G+ N LTSL +L+LS
Sbjct: 28 AQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84
Query: 316 YNDFNSSIPNWL-ASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPR 374
N S+PN + + L ++L +N LQ G L+ ++ L L QL+
Sbjct: 85 TNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-QLKDLRLYQNQLKSVPDG 142
Query: 375 SFGRLCNLREISLSD 389
F RL +L+ I L D
Sbjct: 143 VFDRLTSLQYIWLHD 157
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 283 SNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWL-ASFSNLVHISLRS 340
+ YLDL +N + S+P G+ LTSL L L N S+PN + ++L +++L +
Sbjct: 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST 85
Query: 341 NSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEIL 400
N LQ G L+ ++ L L++ QL+ F +L L+++ L ++ +
Sbjct: 86 NQLQSLPNGVFDKLT-QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 401 DIFSS 405
D +S
Sbjct: 145 DRLTS 149
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 105/266 (39%), Gaps = 30/266 (11%)
Query: 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
F L LDL+ G +P + + LK L LS F + N L +L + N
Sbjct: 274 FTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN 332
Query: 193 SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPP 252
+ + L L LQ LDL ++ + SL QL +
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSL----------------QLKNLSHLQ 376
Query: 253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVG-LQNLTSLRH 311
+N+S L L S F + L LDL + P QNL L+
Sbjct: 377 TLNLSHNEPLGLQSQAFKE----------CPQLELLDLAFTRLHINAPQSPFQNLHFLQV 426
Query: 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ-GSITGF-LANLSASIEVLDLSSQQLE 369
L+L+Y ++S + LA L H++L+ N Q G+IT L S+EVL LSS L
Sbjct: 427 LNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLL 486
Query: 370 GQIPRSFGRLCNLREISLSDVKMSQD 395
++F L + + LS ++ D
Sbjct: 487 SIDQQAFHSLGKMSHVDLSHNSLTCD 512
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 258 SISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYN 317
S+ L+L ++F S F + L LDL + +G +P G++ L L+ L LS N
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCF--TQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVN 308
Query: 318 DFNSSIPNWLASFSNLVHISLRSNSLQGSI-TGFLANLSASIEVLDLSSQQLEG 370
F+ A+F +L H+ +R N + + G L L +++ LDLS +E
Sbjct: 309 HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKL-GNLQTLDLSHNDIEA 361
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 103/268 (38%), Gaps = 39/268 (14%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQ-LGNLSKLQYLD 188
L + HL L+LS N G + +L+ L+L+ P NL LQ L+
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 189 LVENSELYVDNLSWLPGLSLLQHLDLGGVNLGK-AFDWSLAINXXXXXXXXXXXGCQLDH 247
L L N L GL +L+HL+L G + + + C L
Sbjct: 429 LTY-CFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLS 487
Query: 248 FHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNL--VYLDLGSNDFQGSIPVGLQN 305
++ +S +DLS NSL + LS+L +YL+L +N P L
Sbjct: 488 IDQQAFHSLGKMSHVDLS-----HNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPI 542
Query: 306 LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSS 365
L+ ++LS+N + + N +H +T + NL
Sbjct: 543 LSQQSTINLSHNPLDCTCSN--------IHF----------LTWYKENL----------- 573
Query: 366 QQLEGQIPRSFGRLCNLREISLSDVKMS 393
+LEG + +LR + LSDVK+S
Sbjct: 574 HKLEGSEETTCANPPSLRGVKLSDVKLS 601
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 304 QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ-GSITGF-LANLSASIEVL 361
QNL LR L+LS+ ++S + LA +L H++L+ NS Q GSI+ L + S+E+L
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
Query: 362 DLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQD 395
LSS L ++F L N+ + LS ++ D
Sbjct: 481 ILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 8/202 (3%)
Query: 127 NPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQ-LGNLSKLQ 185
N L + +HL YL+LS N G + +L+ L+++ PH NL L+
Sbjct: 368 NLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLR 427
Query: 186 YLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGK-AFDWSLAINXXXXXXXXXXXGCQ 244
L+L + L N L GL L+HL+L G + + + + C
Sbjct: 428 VLNL-SHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCN 486
Query: 245 LDHFHPPPIVNISSISVLDLSSNQFDQNSL-VLSWVFGLSNLVYLDLGSNDFQGSIPVGL 303
L + +++ LDLS N +S+ LS + GL YL++ SN+ + P L
Sbjct: 487 LLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL----YLNMASNNIRIIPPHLL 542
Query: 304 QNLTSLRHLDLSYNDFNSSIPN 325
L+ ++LS+N + + N
Sbjct: 543 PALSQQSIINLSHNPLDCTCSN 564
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 10/191 (5%)
Query: 136 LNYLDLSGN--SFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
L+YLDLS N SF G L++L+LS G M + +G L +LQ+LD ++
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHST 410
Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPI 253
V S L L +LD+ N FD + + D+
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 254 VNISSISVLDLSSNQFDQNSLVLSW-VFG-LSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
N ++++ LDLS Q +Q +SW VF L L L++ N+ L SL
Sbjct: 470 ANTTNLTFLDLSKCQLEQ----ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 312 LDLSYNDFNSS 322
LD S+N +S
Sbjct: 526 LDCSFNRIETS 536
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS-SIPNWLASFSNLVHISLR 339
L NLV ++ + S P+G L +L+ L++++N +S +P + ++ +NLVH+ L
Sbjct: 105 SLENLVAVETKLASLE-SFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
Query: 340 SNSLQ 344
N +Q
Sbjct: 162 YNYIQ 166
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 81/191 (42%), Gaps = 10/191 (5%)
Query: 136 LNYLDLSGN--SFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENS 193
L+YLDLS N SF G L++L+LS G M + +G L +LQ+LD ++
Sbjct: 347 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHST 405
Query: 194 ELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPI 253
V S L L +LD+ N FD + + D+
Sbjct: 406 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDNTLSNVF 464
Query: 254 VNISSISVLDLSSNQFDQNSLVLSW-VFG-LSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
N ++++ LDLS Q +Q +SW VF L L L++ N+ L SL
Sbjct: 465 ANTTNLTFLDLSKCQLEQ----ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 520
Query: 312 LDLSYNDFNSS 322
LD S+N +S
Sbjct: 521 LDCSFNRIETS 531
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNS-SIPNWLASFSNLVHISLR 339
L NLV ++ + S P+G L +L+ L++++N +S +P + ++ +NLVH+ L
Sbjct: 100 SLENLVAVETKLASLE-SFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 156
Query: 340 SNSLQ 344
N +Q
Sbjct: 157 YNYIQ 161
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 19/139 (13%)
Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLD 313
+N+ ++SSN F S L LDL + +P GL L++L+ L
Sbjct: 259 INLQKHYFFNISSNTF----------HCFSGLQELDLTATHL-SELPSGLVGLSTLKKLV 307
Query: 314 LSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI-TGFLANLSASIEVLDLSSQQLEGQI 372
LS N F + ++F +L H+S++ N+ + + TG L NL ++ LDLS +E
Sbjct: 308 LSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIET-- 364
Query: 373 PRSFGRLCNLREISLSDVK 391
CNL+ +LS ++
Sbjct: 365 ----SDCCNLQLRNLSHLQ 379
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 136 LNYLDLSGNSF-GGGIPRF--LGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVEN 192
L +L+L GN F G I + L ++G+L+ L LS + H +L + ++DL N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510
Query: 193 --SELYVDNLSWLPGLSL 208
+ ++ LS L G+ L
Sbjct: 511 RLTSSSIEALSHLKGIYL 528
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
L +L L + N P LG + L L+L+G K + L +L+ L LDL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFH 249
N + NL+ L GL+ L L LG Q+ +
Sbjct: 247 ANN---QISNLAPLSGLTKLTELKLG--------------------------ANQISNIS 277
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P+ +++++ L+L+ NQ + +S + L NL YL L N+ PV +LT L
Sbjct: 278 --PLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVS--SLTKL 329
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHIS 337
+ L S N + ++S +NL +I+
Sbjct: 330 QRLFFSNNKVSD-----VSSLANLTNIN 352
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 252 PIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
P+ N++++ LD+SSN+ +S + L+NL L +N P+G+ LT+L
Sbjct: 168 PLANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS--ASIEVLDLSSQQLE 369
L L+ N LAS +NL + L +N + LA LS + L L + Q+
Sbjct: 222 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-----LAPLSGLTKLTELKLGANQIS 274
Query: 370 GQIPRSFGRLCNLREISLSDVKMSQDISEI 399
P L L + L++ ++ +DIS I
Sbjct: 275 NISP--LAGLTALTNLELNENQL-EDISPI 301
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 149/361 (41%), Gaps = 43/361 (11%)
Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
+NL L L S+ +L SL HLDLS N +S +W S+L +++L N
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Query: 343 LQG-SITGFLANLSASIEVLDLSSQQLEGQIPR-SFGRLCNLREISLSDVKM----SQDI 396
Q +T NL+ +++ L + + + +I R F L +L E+ + + + SQ +
Sbjct: 136 YQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 194
Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLF--LSHNXXXXXXXXXXX 454
I DI + ++ + +IF + S + + + D+ +
Sbjct: 195 KSIRDIHHLTLHLSESAFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 251
Query: 455 XXXXXERVVLSNNTLKGY---------LSEIHL--ANLSKLVSFDVSGNALTLKVGPDWI 503
VL++ + LSE+ L+ L F+ S + + ++G
Sbjct: 252 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG---- 307
Query: 504 PPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT----VPARFWEASPQLYF 559
++E + ++ H+ + F+ LS + R ++++ VP F + L F
Sbjct: 308 ---KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 364
Query: 560 LNFSNSRINGEIPNLSKATG----LRTVDLSSNNL-----SGTLPLISFQLESIDLSNNA 610
L+ S + + E S G L+T+ LS N+L +G + L L S+D+S N
Sbjct: 365 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 424
Query: 611 F 611
F
Sbjct: 425 F 425
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 156 SMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLG 215
S+G L++L+LS + G LS L+YL+L+ N + S P L+ LQ L +G
Sbjct: 98 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
Query: 216 GV 217
V
Sbjct: 158 NV 159
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGM-IPHQLGNLSKLQYLDL--VEN 192
L +LDLS N + G + LKYLNL G ++ + + NL+ LQ L + VE
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 161
Query: 193 -SELYVDNLSWLPGLSLLQHLDLGGVNL 219
SE+ + + GL+ L L++ ++L
Sbjct: 162 FSEIRRIDFA---GLTSLNELEIKALSL 186
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
L +L L + N P LG + L L+L+G K + L +L+ L LDL
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFH 249
N + NL+ L GL+ L L LG Q+ +
Sbjct: 246 ANN---QISNLAPLSGLTKLTELKLG--------------------------ANQISNIS 276
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P+ +++++ L+L+ NQ + +S + L NL YL L N+ PV +LT L
Sbjct: 277 --PLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVS--SLTKL 328
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHIS 337
+ L S N + ++S +NL +I+
Sbjct: 329 QRLFFSNNKVSD-----VSSLANLTNIN 351
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 50/224 (22%)
Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXX 237
L NL+ L L+L N+ + ++S L GL+ LQ L+ G
Sbjct: 125 LKNLTNLNRLELSSNT---ISDISALSGLTSLQQLNFGN--------------------- 160
Query: 238 XXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
Q+ P + N++++ LD+SSN+ +S + L+NL L +N
Sbjct: 161 ------QVTDLKP--LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISD 208
Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS-- 355
P+G+ LT+L L L+ N LAS +NL + L +N + LA LS
Sbjct: 209 ITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-----LAPLSGL 259
Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
+ L L + Q+ P L L + L++ ++ +DIS I
Sbjct: 260 TKLTELKLGANQISNISP--LAGLTALTNLELNENQL-EDISPI 300
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDL 314
++ ++ L+L NQ +L L+ L L L +N S+P+G+ +LT L L L
Sbjct: 58 LTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYL 114
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPR 374
N S + L + L +N LQ G L+ +++ L LS+ QL+
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQTLSLSTNQLQSVPHG 173
Query: 375 SFGRLCNLREISL 387
+F RL L+ I+L
Sbjct: 174 AFDRLGKLQTITL 186
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS--- 337
GL+ L +L+L N Q +LT L L L+ N +S+P L F +L +
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLP--LGVFDHLTQLDKLY 113
Query: 338 LRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLS 388
L N L+ +G L+ ++ L L++ QL+ +F +L NL+ +SLS
Sbjct: 114 LGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 80/361 (22%), Positives = 149/361 (41%), Gaps = 43/361 (11%)
Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
+NL L L S+ +L SL HLDLS N +S +W S+L +++L N
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 343 LQG-SITGFLANLSASIEVLDLSSQQLEGQIPR-SFGRLCNLREISLSDVKM----SQDI 396
Q +T NL+ +++ L + + + +I R F L +L E+ + + + SQ +
Sbjct: 110 YQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168
Query: 397 SEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLF--LSHNXXXXXXXXXXX 454
I DI + ++ + +IF + S + + + D+ +
Sbjct: 169 KSIRDIHHLTLHLSESAFLL---EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 455 XXXXXERVVLSNNTLKGY---------LSEIHL--ANLSKLVSFDVSGNALTLKVGPDWI 503
VL++ + LSE+ L+ L F+ S + + ++G
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG---- 281
Query: 504 PPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDT----VPARFWEASPQLYF 559
++E + ++ H+ + F+ LS + R ++++ VP F + L F
Sbjct: 282 ---KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338
Query: 560 LNFSNSRINGEIPNLSKATG----LRTVDLSSNNL-----SGTLPLISFQLESIDLSNNA 610
L+ S + + E S G L+T+ LS N+L +G + L L S+D+S N
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398
Query: 611 F 611
F
Sbjct: 399 F 399
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 156 SMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLG 215
S+G L++L+LS + G LS L+YL+L+ N + S P L+ LQ L +G
Sbjct: 72 SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
Query: 216 GV 217
V
Sbjct: 132 NV 133
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGM-IPHQLGNLSKLQYLDL--VEN 192
L +LDLS N + G + LKYLNL G ++ + + NL+ LQ L + VE
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135
Query: 193 -SELYVDNLSWLPGLSLLQHLDLGGVNL 219
SE+ + + GL+ L L++ ++L
Sbjct: 136 FSEIRRIDFA---GLTSLNELEIKALSL 160
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 305 NLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLS 364
+ T L L L+ N+ N N ++L+ ++L N L GSI + +EVLDLS
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLS 355
Query: 365 SQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLES--WDMTGCKI 421
+ +SF L NL+E++L ++ I D +S L + WD + +I
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXXXXXXERVVLSNNTLK 470
+++ D++ KIF L S HF L+ L L+ N ++ LS N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL- 335
Query: 471 GYLSEIHLANLSKLVSFDVSGNAL 494
G + NL KL D+S N +
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYNHI 359
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 50/224 (22%)
Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXX 237
L NL+ L L+L N+ + ++S L GL+ LQ L+ G
Sbjct: 125 LKNLTNLNRLELSSNT---ISDISALSGLTSLQQLNFGN--------------------- 160
Query: 238 XXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
Q+ P + N++++ LD+SSN+ +S + L+NL L +N
Sbjct: 161 ------QVTDLKP--LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISD 208
Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS-- 355
P+G+ LT+L L L+ N LAS +NL + L +N + LA LS
Sbjct: 209 ITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-----LAPLSGL 259
Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
+ L L + Q+ P L L + L++ ++ +DIS I
Sbjct: 260 TKLTELKLGANQISNISP--LAGLTALTNLELNENQL-EDISPI 300
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 46/208 (22%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
L +L L + N P LG + L L+L+G K + L +L+ L LDL
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 245
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFH 249
N + NL+ L GL+ L L LG Q+ +
Sbjct: 246 ANNQ---ISNLAPLSGLTKLTELKLG--------------------------ANQISNIS 276
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P+ +++++ L+L+ NQ + +S + L NL YL L N+ PV +LT L
Sbjct: 277 --PLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVS--SLTKL 328
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHIS 337
+ L YN+ S + +S +NL +I+
Sbjct: 329 QRL-FFYNNKVSDV----SSLANLTNIN 351
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSY 316
++I+VL+L+ NQ + L + S L LD+G N P Q L L+ L+L +
Sbjct: 25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82
Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF 376
N+ + A +NL + L SNS+Q ++ LDLS L +
Sbjct: 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQ 141
Query: 377 GRLCNLREISLSDVKMSQDISEILDIFSSCISDRLE 412
+L NL+E+ LS+ K+ SE LDIF++ +LE
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 177
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 714 PTWIGEKFSSMVILNLRSNIFDGQFPTELCF-LTSLQILDLGYNNLSGAIPKCISN 768
P + + S + ILNL SN FD + P E+ L L+I+DLG NNL +P + N
Sbjct: 528 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFN 581
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
+L QH N L ++ GG FL + L LNL GF + +L +L+ +D
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID- 566
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGK 221
L ++NL+ LP + L +NL K
Sbjct: 567 -----LGLNNLNTLPASVFNNQVSLKSLNLQK 593
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSY 316
++I+VL+L+ NQ + L + S L LD+G N P Q L L+ L+L +
Sbjct: 30 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 87
Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF 376
N+ + A +NL + L SNS+Q ++ LDLS L +
Sbjct: 88 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQ 146
Query: 377 GRLCNLREISLSDVKMSQDISEILDIFSSCISDRLE 412
+L NL+E+ LS+ K+ SE LDIF++ +LE
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 182
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 714 PTWIGEKFSSMVILNLRSNIFDGQFPTELCF-LTSLQILDLGYNNLSGAIPKCISN 768
P + + S + ILNL SN FD + P E+ L L+I+DLG NNL +P + N
Sbjct: 533 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFN 586
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
+L QH N L ++ GG FL + L LNL GF + +L +L+ +D
Sbjct: 513 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID- 571
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGK 221
L ++NL+ LP + L +NL K
Sbjct: 572 -----LGLNNLNTLPASVFNNQVSLKSLNLQK 598
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 14/192 (7%)
Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSY 316
+SI L L++NQ S +NL LDL N+ L SLR+L L Y
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSIT--------GFLANLSASIEVLDLSSQQL 368
N+ P SNL ++SL+ + S++ F +E L++ +
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 369 EGQIPRSFGRLCNLREISLSDVKMS-QDISEILDIFSSCISDRLESWDMTG---CKIFGH 424
+F L +L+ +SLS S Q ++ + F S L + ++T KI
Sbjct: 342 PSTKSNTFTGLVSLKYLSLSKTFTSLQTLTN--ETFVSLAHSPLLTLNLTKNHISKIANG 399
Query: 425 LTSQIGHFKSLD 436
S +G + LD
Sbjct: 400 TFSWLGQLRILD 411
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSY 316
++I+VL+L+ NQ + L + S L LD+G N P Q L L+ L+L +
Sbjct: 35 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 92
Query: 317 NDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSF 376
N+ + A +NL + L SNS+Q ++ LDLS L +
Sbjct: 93 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK-QKNLITLDLSHNGLSSTKLGTQ 151
Query: 377 GRLCNLREISLSDVKMSQDISEILDIFSSCISDRLE 412
+L NL+E+ LS+ K+ SE LDIF++ +LE
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE 187
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 714 PTWIGEKFSSMVILNLRSNIFDGQFPTELCF-LTSLQILDLGYNNLSGAIPKCISN 768
P + + S + ILNL SN FD + P E+ L L+I+DLG NNL +P + N
Sbjct: 538 PIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFN 591
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
+L QH N L ++ GG FL + L LNL GF + +L +L+ +D
Sbjct: 518 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID- 576
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGK 221
L ++NL+ LP + L +NL K
Sbjct: 577 -----LGLNNLNTLPASVFNNQVSLKSLNLQK 603
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 97/248 (39%), Gaps = 13/248 (5%)
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTS 308
P N+ ++ L L SN+ L+ VF GLSNL LD+ N + Q+L +
Sbjct: 73 PGAFNNLFNLRTLGLRSNRL---KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129
Query: 309 LRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL 368
L+ L++ ND + ++L ++L +L T L++L I VL L +
Sbjct: 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI-VLRLRHLNI 188
Query: 369 EGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISD-RLESWDMTGCKIFGHLTS 427
SF RL L+ + +S ++ +C+ L S +T C +
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMT------PNCLYGLNLTSLSITHCNLTAVPYL 242
Query: 428 QIGHFKSLDSLFLSHNXXXXXXXXXXXXXXXXERVVLSNNTLKGYLSEIHLANLSKLVSF 487
+ H L L LS+N + + L L + L+ L
Sbjct: 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVL 301
Query: 488 DVSGNALT 495
+VSGN LT
Sbjct: 302 NVSGNQLT 309
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 22/164 (13%)
Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357
++P G+ T R LDL N + + ASF +L + L N + G NL +
Sbjct: 25 AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL-FN 81
Query: 358 IEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVK-------MSQDIS-----EILDIFSS 405
+ L L S +L+ F L NL ++ +S+ K M QD+ E+ D
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 406 CISDR-------LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH 442
IS R LE + C + T + H L L L H
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 50/224 (22%)
Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXX 237
L NL+ L L+L N+ + ++S L GL+ LQ L G
Sbjct: 130 LKNLTNLNRLELSSNT---ISDISALSGLTSLQQLSFGN--------------------- 165
Query: 238 XXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
Q+ P + N++++ LD+SSN+ +S + L+NL L +N
Sbjct: 166 ------QVTDLKP--LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISD 213
Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS-- 355
P+G+ LT+L L L+ N LAS +NL + L +N + LA LS
Sbjct: 214 ITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-----LAPLSGL 264
Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
+ L L + Q+ P L L + L++ ++ +DIS I
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQL-EDISPI 305
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 46/208 (22%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
L +L L + N P LG + L L+L+G K + L +L+ L LDL
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFH 249
N + NL+ L GL+ L L LG Q+ +
Sbjct: 251 ANNQ---ISNLAPLSGLTKLTELKLG--------------------------ANQISNIS 281
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P+ +++++ L+L+ NQ + +S + L NL YL L N+ PV +LT L
Sbjct: 282 --PLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVS--SLTKL 333
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHIS 337
+ L YN+ S + +S +NL +I+
Sbjct: 334 QRL-FFYNNKVSDV----SSLANLTNIN 356
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 46/208 (22%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
L +L L + N P LG + L L+L+G K + L +L+ L LDL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFH 249
N + NL+ L GL+ L L LG Q+ +
Sbjct: 247 ANNQ---ISNLAPLSGLTKLTELKLG--------------------------ANQISNIS 277
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P+ +++++ L+L+ NQ + +S + L NL YL L N+ PV +LT L
Sbjct: 278 --PLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVS--SLTKL 329
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHIS 337
+ L YN+ S + +S +NL +I+
Sbjct: 330 QRL-FFYNNKVSDV----SSLANLTNIN 352
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 49/224 (21%)
Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXX 237
L NL+ L L+L N+ + ++S L GL+ LQ L+ + D
Sbjct: 125 LKNLTNLNRLELSSNT---ISDISALSGLTSLQQLNFSS---NQVTDLK----------- 167
Query: 238 XXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
P+ N++++ LD+SSN+ +S + L+NL L +N
Sbjct: 168 --------------PLANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISD 209
Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS-- 355
P+G+ LT+L L L+ N LAS +NL + L +N + LA LS
Sbjct: 210 ITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-----LAPLSGL 260
Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
+ L L + Q+ P L L + L++ ++ +DIS I
Sbjct: 261 TKLTELKLGANQISNISP--LAGLTALTNLELNENQL-EDISPI 301
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 50/224 (22%)
Query: 178 LGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXX 237
L NL+ L L+L N+ + ++S L GL+ LQ L G
Sbjct: 129 LKNLTNLNRLELSSNT---ISDISALSGLTSLQQLSFGN--------------------- 164
Query: 238 XXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQG 297
Q+ P + N++++ LD+SSN+ +S + L+NL L +N
Sbjct: 165 ------QVTDLKP--LANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISD 212
Query: 298 SIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS-- 355
P+G+ LT+L L L+ N LAS +NL + L +N + LA LS
Sbjct: 213 ITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN-----LAPLSGL 263
Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEI 399
+ L L + Q+ P L L + L++ ++ +DIS I
Sbjct: 264 TKLTELKLGANQISNISP--LAGLTALTNLELNENQL-EDISPI 304
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 46/208 (22%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
L +L L + N P LG + L L+L+G K + L +L+ L LDL
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 249
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFH 249
N + NL+ L GL+ L L LG Q+ +
Sbjct: 250 ANN---QISNLAPLSGLTKLTELKLG--------------------------ANQISNIS 280
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P+ +++++ L+L+ NQ + +S + L NL YL L N+ PV +LT L
Sbjct: 281 --PLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVS--SLTKL 332
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHIS 337
+ L + N + ++S +NL +I+
Sbjct: 333 QRLFFANNKVSD-----VSSLANLTNIN 355
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 46/208 (22%)
Query: 130 LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDL 189
L +L L + N P LG + L L+L+G K + L +L+ L LDL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 246
Query: 190 VENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFH 249
N + NL+ L GL+ L L LG Q+ +
Sbjct: 247 ANNQ---ISNLAPLSGLTKLTELKLG--------------------------ANQISNIS 277
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P+ +++++ L+L+ NQ + +S + L NL YL L N+ PV +LT L
Sbjct: 278 --PLAGLTALTNLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVS--SLTKL 329
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHIS 337
+ L YN+ S + +S +NL +I+
Sbjct: 330 QRL-FFYNNKVSDV----SSLANLTNIN 352
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 252 PIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311
P+ N++++ LD+SSN+ +S + L+NL L +N P+G+ LT+L
Sbjct: 168 PLANLTTLERLDISSNKVSD----ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDE 221
Query: 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS--ASIEVLDLSSQQLE 369
L L+ N LAS +NL + L +N + LA LS + L L + Q+
Sbjct: 222 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-----LAPLSGLTKLTELKLGANQIS 274
Query: 370 GQIPRSFGRLCNLREISLSDVKMSQDISEI 399
P L L + L++ ++ +DIS I
Sbjct: 275 NISP--LAGLTALTNLELNENQL-EDISPI 301
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 4/99 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353
+ ND L NL + L+ NSL GF +
Sbjct: 156 ANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ L
Sbjct: 141 PGLLTP-TPKLEKLSLANNDL 160
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 253 IVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHL 312
I++ + I LD+S +F+Q L YLDL N + + +L+HL
Sbjct: 51 IISHNRIQYLDISVFKFNQE------------LEYLDLSHNKL---VKISCHPTVNLKHL 95
Query: 313 DLSYNDFNS-SIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQ 371
DLS+N F++ I + S L + L + L+ S +A+L+ S +L L E +
Sbjct: 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKE 155
Query: 372 IPR 374
P
Sbjct: 156 DPE 158
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 281 GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHIS--- 337
GL+ L +L+L N Q +LT L L L+ N +S+P L F +L +
Sbjct: 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLP--LGVFDHLTQLDKLY 113
Query: 338 LRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLS 388
L N L+ +G L+ ++ L L++ QL+ +F +L NL+ +SLS
Sbjct: 114 LGGNQLKSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ QL
Sbjct: 141 PGLLTP-TPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353
+ N L NL + L+ NSL GF +
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ QL
Sbjct: 141 PGLLTP-TPKLEKLSLANNQL 160
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353
+ N L NL + L+ NSL GF +
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS 194
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ QL
Sbjct: 141 PGLLTP-TPKLEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
+ N L NL + L+ NSL GF
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ QL
Sbjct: 141 PGLLTP-TPKLEKLSLANNQL 160
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
+ N L NL + L+ NSL GF
Sbjct: 156 ANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 255 NISSISVLDLSSNQFDQNSLVLSWVFG-LSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLD 313
+++ ++VLDL +NQ +++ S VF L +L L + N +P G++ LT L HL
Sbjct: 86 SLTQLTVLDLGTNQL---TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 314 LSYNDFNSSIPNWLASFSNLVHISLRSN 341
L N S S+L H L N
Sbjct: 142 LDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 296 QGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS 355
S+P G+ T+ + L L N P S NL + L SN L G +L+
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT 88
Query: 356 ASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQ 394
+ VLDL + QL F RL +L+E+ + K+++
Sbjct: 89 -QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 282 LSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHI 336
L NL L LGSN G++PVG+ +LT L LDL N + +P+ A F LVH+
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL-TVLPS--AVFDRLVHL 114
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLA 352
+ N+ L NL + L+ NSL GF
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ L
Sbjct: 141 PGLLTP-TPKLEKLSLANNNL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 100 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 156
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
+ N+ L NL + L+ NSL GF
Sbjct: 157 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 192
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 83 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ L
Sbjct: 142 PGLLTP-TPKLEKLSLANNNL 161
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 260 SVLDLSSNQFDQNSL--VLSWVF-GLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLS 315
+++L+ + D+N L + VF L+ L YL LG N+ Q S+P G+ LTSL+ L L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165
Query: 316 YNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLS 355
N + L + L +N L+ G +L
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 346 SITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMS 393
+T +N+ A + LDL S +L ++F RL LR + L+D K+
Sbjct: 27 KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
+ N+ L NL + L+ NSL GF
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ L
Sbjct: 141 PGLLTP-TPKLEKLSLANNNL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
+ N+ L NL + L+ NSL GF
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ L
Sbjct: 141 PGLLTP-TPKLEKLSLANNNL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLT-SLRHLDL 314
+ +++VLD+S N+ SL L + GL L L L N+ + ++P GL T L L L
Sbjct: 99 LPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSL 155
Query: 315 SYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGF 350
+ N+ L NL + L+ NSL GF
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 288 LDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSI 347
LDL N Q S+P+ Q L +L LD+S+N S L L + L+ N L+
Sbjct: 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 348 TGFLANLSASIEVLDLSSQQL 368
G L + +E L L++ L
Sbjct: 141 PGLLTP-TPKLEKLSLANNNL 160
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 125/305 (40%), Gaps = 66/305 (21%)
Query: 157 MGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGG 216
+ L+YLNL+G + P L NL KL L + N + ++S L L+ L+ L L
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK---ITDISALQNLTNLRELYLNE 119
Query: 217 VNLGKAFDWSLAINXXXXXXXXXXXGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVL 276
N+ D S P+ N++ L+L +N N L
Sbjct: 120 DNIS---DIS-------------------------PLANLTKXYSLNLGANH---NLSDL 148
Query: 277 SWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHI 336
S + + L YL + + + P+ NLT L L L+YN P LAS ++L +
Sbjct: 149 SPLSNXTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIEDISP--LASLTSLHYF 204
Query: 337 SLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREIS--------LS 388
+ N + +++ L+S ++ L NL +++ +S
Sbjct: 205 TAYVNQ--------ITDITPVANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQIS 256
Query: 389 DVKMSQDISEI--LDIFSSCISD--------RLESWDMTGCKIFGHLTSQIGHFKSLDSL 438
D+ +D++++ L++ S+ ISD +L S + ++ IG +L +L
Sbjct: 257 DINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTL 316
Query: 439 FLSHN 443
FLS N
Sbjct: 317 FLSQN 321
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 115/308 (37%), Gaps = 60/308 (19%)
Query: 118 ERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQ 177
+++ F G S+ H LDLS R ++ LK LNL+ +
Sbjct: 256 DQNTFAGLARSSVRH------LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA 309
Query: 178 LGNLSKLQYLDLVEN--SELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINXXXXX 235
L LQ L+L N ELY N LP ++ ++DL ++ D +
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA---YIDLQKNHIAIIQDQTFKFLEKLQT 366
Query: 236 XXXXXXGCQLDHFHPP--------------PIVNISSISVLDLSSNQFDQNSLVLSWVFG 281
HF P P +N+++ +++ LS N+ +N +L ++
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA-NLIHLSENRL-ENLDILYFLLR 424
Query: 282 LSNLVYLDLGSNDFQG--------------SIPVG----------------LQNLTSLRH 311
+ +L L L N F + +G + L+ L+
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQ 371
L L++N NS P + + L +SL SN L +L A++E+LD+S QL
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN---DLPANLEILDISRNQLLAP 541
Query: 372 IPRSFGRL 379
P F L
Sbjct: 542 NPDVFVSL 549
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 90/232 (38%), Gaps = 8/232 (3%)
Query: 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNS 342
+N L+L N Q ++L L L LS N + +NL + L N
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 343 LQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDI 402
L G LS ++ L L + +E +F R+ +LR + L ++K ISE
Sbjct: 124 LTTIPNGAFVYLS-KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GA 180
Query: 403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNXXXXXXXXXXXXXXXXERV 462
F + R + M + +LT I LD L LS N +++
Sbjct: 181 FEGLSNLRYLNLAMCNLREIPNLTPLI----KLDELDLSGNHLSAIRPGSFQGLMHLQKL 236
Query: 463 VLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQ 514
+ + ++ + NL LV +++ N LTL + P LE++ L
Sbjct: 237 WMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 282 LSNLVYLDLGSNDFQGSIPVGL-QNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRS 340
L+ L YL+L N ++PVG+ LT L HL L N S + +L HI L +
Sbjct: 63 LTQLTYLNLAVNQLT-ALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFN 121
Query: 341 N 341
N
Sbjct: 122 N 122
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 827 VALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS 886
+ LIDLS N S +++ L +L LSYN P + +KS+ ++ N +S
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 259 ISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYND 318
++ L L NQF +LV + +L +DL +N N+T L L LSYN
Sbjct: 33 VTELYLDGNQF---TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 319 FNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSA 356
P +L +SL N + G +LSA
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 250 PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSL 309
P + N ++++DLS+N+ ++L ++ L+ L L N + P L SL
Sbjct: 47 PKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 310 RHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSL 343
R L L ND + S L H+++ +N L
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 6/141 (4%)
Query: 464 LSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFP 523
LS+N L +E L+ L S +S N L ++P L LDL S HL
Sbjct: 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE 105
Query: 524 FWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRIN----GEIPNLSKATG 579
F L L + + I V +E QL L S ++I+ I + +K
Sbjct: 106 FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164
Query: 580 LRTVDLSSNNLSGTLPLISFQ 600
L +DLSSN L LPL Q
Sbjct: 165 LMLLDLSSNKLKK-LPLTDLQ 184
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 827 VALIDLSKNNFSG-EIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885
AL+DLS NN S T L L SL LS+NH + ++ + ++ +D S+N L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGA---GFKGMIPHQL 178
K +LL ++L +D+S NSF +P K+KYLNLS G IP L
Sbjct: 378 KTGETLLTLKNLTNIDISKNSF-HSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTL 433
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 258 SISVLDLSSNQ--FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS 315
++ LDLS+N+ + NS + V NL L L SN +L SL HLDLS
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCV----NLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 316 YNDFNSSIPNWLASFSNLVHISLRSN 341
YN ++ +W S+L ++L N
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGN 108
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 258 SISVLDLSSNQ--FDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLS 315
++ LDLS+N+ + NS + V NL L L SN +L SL HLDLS
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCV----NLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 316 YNDFNSSIPNWLASFSNLVHISLRSN 341
YN ++ +W S+L ++L N
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 39/147 (26%)
Query: 254 VNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLD 313
+++S++ + ++S+N +F L L L N +P ++NL++LR LD
Sbjct: 229 LDLSNLQIFNISAN-----------IFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLD 276
Query: 314 LSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIP 373
LS+N +S+P L S L + F N+ + +P
Sbjct: 277 LSHNRL-TSLPAELGSCFQLKYFY------------FFDNMVTT--------------LP 309
Query: 374 RSFGRLCNLREISLSDVKMSQDISEIL 400
FG LCNL+ + + + + +IL
Sbjct: 310 WEFGNLCNLQFLGVEGNPLEKQFLKIL 336
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Query: 515 SCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNL 574
SC+ P W + N LG D+ G ++ + F++ I +L
Sbjct: 14 SCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDI-----IKSL 68
Query: 575 S-KATGLRTVDLSSNNLSGTLPLISFQ-LESIDLSNNAFSGSISPVLCNGMRGELQVLNL 632
S K +R + S L G L ++ L+ + L N +G+ P L +L +LNL
Sbjct: 69 SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128
Query: 633 ENNSFSGEIPDCWMNFL 649
N S++ D W+ L
Sbjct: 129 RNVSWATR--DAWLAEL 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,845,873
Number of Sequences: 62578
Number of extensions: 1127253
Number of successful extensions: 2718
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1988
Number of HSP's gapped (non-prelim): 435
length of query: 1011
length of database: 14,973,337
effective HSP length: 108
effective length of query: 903
effective length of database: 8,214,913
effective search space: 7418066439
effective search space used: 7418066439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)