Query 001801
Match_columns 1011
No_of_seqs 797 out of 5783
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 09:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-71 4.1E-76 708.2 47.6 583 33-936 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2E-56 4.2E-61 570.2 39.5 515 233-934 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 3.8E-38 8.2E-43 322.8 -10.2 486 233-886 45-541 (565)
4 KOG4194 Membrane glycoprotein 100.0 2.5E-35 5.3E-40 315.0 9.1 364 286-755 81-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 3.2E-35 6.9E-40 314.2 7.7 365 334-778 81-447 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 8.3E-38 1.8E-42 320.3 -11.6 478 256-910 44-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.2E-34 2.6E-39 326.7 -4.0 243 599-908 241-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.4E-33 3.1E-38 318.0 -3.6 480 163-757 3-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3.4E-32 7.3E-37 292.2 -2.4 254 131-470 4-258 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.7E-31 3.6E-36 287.0 -1.8 281 526-915 122-409 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.2E-24 2.7E-29 223.9 -2.6 428 355-907 66-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 4.2E-21 9E-26 245.1 25.4 127 625-757 778-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 5.4E-24 1.2E-28 219.2 -1.1 278 234-519 68-359 (498)
14 PLN03210 Resistant to P. syrin 99.9 1.3E-20 2.7E-25 240.8 24.2 305 507-884 590-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 2.9E-21 6.3E-26 227.7 15.6 259 558-915 204-463 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 2.5E-21 5.4E-26 228.2 15.0 267 532-897 203-469 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 3.4E-19 7.4E-24 212.0 12.0 118 626-759 221-338 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.1E-19 6.6E-24 212.4 10.4 246 578-913 199-448 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.4E-17 5.2E-22 183.4 5.1 166 233-398 108-296 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.9E-17 6.2E-22 182.7 5.6 60 433-493 250-318 (319)
21 KOG0617 Ras suppressor protein 99.6 4.5E-18 9.7E-23 155.7 -4.1 81 830-913 132-215 (264)
22 KOG0617 Ras suppressor protein 99.6 6.7E-18 1.5E-22 154.5 -4.6 119 648-771 32-151 (264)
23 PLN03150 hypothetical protein; 99.5 1.3E-14 2.9E-19 172.9 11.3 116 827-942 420-538 (623)
24 PLN03150 hypothetical protein; 99.4 4.7E-13 1E-17 159.7 12.4 127 31-194 368-502 (623)
25 KOG0532 Leucine-rich repeat (L 99.2 5.8E-13 1.3E-17 144.6 -3.3 194 625-884 75-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1E-12 2.2E-17 142.7 -3.1 195 648-908 74-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 2.4E-11 5.2E-16 139.1 7.1 199 629-892 97-296 (394)
28 COG4886 Leucine-rich repeat (L 99.2 3.3E-11 7.2E-16 138.0 7.0 200 652-916 96-296 (394)
29 KOG1909 Ran GTPase-activating 99.1 7.3E-12 1.6E-16 129.0 0.6 250 128-393 24-311 (382)
30 KOG1909 Ran GTPase-activating 99.1 1.7E-11 3.7E-16 126.3 -0.1 219 126-368 50-310 (382)
31 KOG3207 Beta-tubulin folding c 99.1 2.7E-11 5.9E-16 128.1 1.3 212 131-344 118-339 (505)
32 KOG3207 Beta-tubulin folding c 99.0 1.4E-10 3.1E-15 122.7 2.8 111 231-341 119-232 (505)
33 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3.1E-14 132.4 4.8 254 125-387 561-826 (889)
34 PF14580 LRR_9: Leucine-rich r 98.8 5.4E-09 1.2E-13 102.0 6.5 126 646-777 16-147 (175)
35 PF14580 LRR_9: Leucine-rich r 98.8 4.8E-09 1.1E-13 102.3 5.9 104 234-344 20-126 (175)
36 KOG1259 Nischarin, modulator o 98.8 1.3E-09 2.9E-14 109.5 1.1 206 125-345 205-413 (490)
37 PF08263 LRRNT_2: Leucine rich 98.8 5.7E-09 1.2E-13 76.2 3.6 41 33-75 1-43 (43)
38 KOG1259 Nischarin, modulator o 98.8 1.8E-09 3.9E-14 108.5 1.1 130 331-496 284-413 (490)
39 PF13855 LRR_8: Leucine rich r 98.7 7.9E-09 1.7E-13 82.7 3.6 60 850-909 2-61 (61)
40 KOG4658 Apoptotic ATPase [Sign 98.7 1.3E-08 2.9E-13 124.1 6.8 180 134-344 545-730 (889)
41 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.3E-13 80.4 3.9 60 826-885 2-61 (61)
42 KOG0531 Protein phosphatase 1, 98.6 5.3E-09 1.2E-13 119.8 -2.4 241 132-392 70-317 (414)
43 KOG0531 Protein phosphatase 1, 98.6 8.7E-09 1.9E-13 118.0 -1.1 217 625-911 72-291 (414)
44 KOG2982 Uncharacterized conser 98.5 2.5E-08 5.3E-13 100.6 1.0 114 181-295 44-158 (418)
45 KOG2120 SCF ubiquitin ligase, 98.5 4.7E-09 1E-13 105.7 -4.3 182 134-342 185-374 (419)
46 KOG2120 SCF ubiquitin ligase, 98.3 3.5E-08 7.6E-13 99.6 -3.7 180 208-391 186-374 (419)
47 COG5238 RNA1 Ran GTPase-activa 98.1 6.1E-07 1.3E-11 89.6 0.7 89 280-369 211-316 (388)
48 COG5238 RNA1 Ran GTPase-activa 98.1 1.1E-06 2.3E-11 87.9 2.3 251 130-395 26-318 (388)
49 KOG4579 Leucine-rich repeat (L 98.0 3.3E-07 7.1E-12 82.1 -2.9 94 675-772 29-125 (177)
50 KOG1859 Leucine-rich repeat pr 98.0 3.1E-07 6.7E-12 103.4 -4.0 105 624-734 186-291 (1096)
51 KOG2982 Uncharacterized conser 97.9 4.6E-06 1E-10 84.6 2.8 64 432-495 198-262 (418)
52 KOG4579 Leucine-rich repeat (L 97.9 6.9E-07 1.5E-11 80.1 -2.9 135 626-766 28-166 (177)
53 KOG1859 Leucine-rich repeat pr 97.9 1.2E-06 2.6E-11 98.9 -2.3 102 651-759 166-267 (1096)
54 KOG4341 F-box protein containi 97.8 1.3E-06 2.7E-11 92.9 -3.4 288 134-469 138-438 (483)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.7E-05 3.7E-10 57.9 3.0 36 850-886 2-37 (44)
56 KOG4341 F-box protein containi 97.7 3.1E-06 6.8E-11 90.0 -3.5 85 409-493 346-437 (483)
57 PRK15386 type III secretion pr 97.7 0.00012 2.5E-09 80.6 8.1 77 669-758 48-124 (426)
58 PRK15386 type III secretion pr 97.6 0.00022 4.8E-09 78.5 9.0 133 577-732 51-187 (426)
59 PF12799 LRR_4: Leucine Rich r 97.6 5.2E-05 1.1E-09 55.4 2.8 38 873-911 1-38 (44)
60 KOG3665 ZYG-1-like serine/thre 97.5 5E-05 1.1E-09 90.9 2.8 84 206-293 147-230 (699)
61 KOG1644 U2-associated snRNP A' 97.5 0.00014 3E-09 70.4 4.6 88 133-222 41-128 (233)
62 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.3E-09 88.1 3.7 152 207-363 122-282 (699)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00021 4.5E-09 72.4 3.5 118 122-241 31-151 (260)
64 KOG1644 U2-associated snRNP A' 97.2 0.00066 1.4E-08 65.8 5.6 103 650-756 43-150 (233)
65 PF13306 LRR_5: Leucine rich r 96.2 0.012 2.6E-07 55.2 7.0 105 645-755 8-112 (129)
66 KOG2123 Uncharacterized conser 96.2 0.00015 3.2E-09 73.3 -6.5 104 132-239 17-123 (388)
67 PF13306 LRR_5: Leucine rich r 96.2 0.01 2.3E-07 55.5 6.2 83 229-316 8-90 (129)
68 KOG2739 Leucine-rich acidic nu 96.1 0.0029 6.2E-08 64.3 2.2 63 646-710 40-104 (260)
69 KOG1947 Leucine rich repeat pr 95.7 0.0027 5.9E-08 75.0 0.2 175 132-318 186-373 (482)
70 PF00560 LRR_1: Leucine Rich R 95.7 0.0049 1.1E-07 37.4 1.0 19 851-870 2-20 (22)
71 KOG2123 Uncharacterized conser 95.7 0.00095 2.1E-08 67.7 -3.4 83 208-297 20-102 (388)
72 KOG1947 Leucine rich repeat pr 95.6 0.0062 1.3E-07 71.9 2.3 79 429-518 358-439 (482)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.0053 1.2E-07 37.2 0.9 22 874-896 1-22 (22)
74 KOG4308 LRR-containing protein 95.4 0.00018 3.8E-09 82.5 -11.2 67 128-194 109-184 (478)
75 KOG4308 LRR-containing protein 93.9 0.0018 3.9E-08 74.4 -7.8 68 276-343 108-184 (478)
76 KOG0473 Leucine-rich repeat pr 88.2 0.035 7.7E-07 55.1 -4.2 84 824-910 41-124 (326)
77 PF13504 LRR_7: Leucine rich r 87.3 0.37 8E-06 27.0 1.3 11 699-709 3-13 (17)
78 smart00369 LRR_TYP Leucine-ric 85.8 0.58 1.3E-05 29.5 1.8 16 873-888 2-17 (26)
79 smart00370 LRR Leucine-rich re 85.8 0.58 1.3E-05 29.5 1.8 16 873-888 2-17 (26)
80 KOG0473 Leucine-rich repeat pr 85.3 0.02 4.4E-07 56.8 -7.6 89 251-344 36-124 (326)
81 smart00369 LRR_TYP Leucine-ric 84.6 0.9 1.9E-05 28.7 2.3 21 697-718 2-22 (26)
82 smart00370 LRR Leucine-rich re 84.6 0.9 1.9E-05 28.7 2.3 21 697-718 2-22 (26)
83 KOG3864 Uncharacterized conser 82.3 0.27 5.8E-06 48.4 -1.3 86 307-392 101-188 (221)
84 PF13516 LRR_6: Leucine Rich r 80.6 0.31 6.8E-06 30.1 -1.0 14 850-863 3-16 (24)
85 KOG3864 Uncharacterized conser 76.3 0.33 7.2E-06 47.7 -2.7 33 136-168 103-135 (221)
86 smart00365 LRR_SD22 Leucine-ri 66.7 4.7 0.0001 25.6 1.8 15 872-886 1-15 (26)
87 KOG4242 Predicted myosin-I-bin 54.9 83 0.0018 35.7 9.8 34 357-390 355-390 (553)
88 smart00368 LRR_RI Leucine rich 51.5 11 0.00025 24.2 1.7 13 874-886 3-15 (28)
89 smart00364 LRR_BAC Leucine-ric 50.2 10 0.00023 24.0 1.3 17 698-715 3-19 (26)
90 PF15102 TMEM154: TMEM154 prot 45.4 20 0.00043 33.6 2.9 28 964-991 60-88 (146)
91 KOG3763 mRNA export factor TAP 43.4 17 0.00037 41.8 2.5 37 207-243 218-254 (585)
92 KOG4242 Predicted myosin-I-bin 41.5 1.3E+02 0.0028 34.2 8.8 37 673-709 440-480 (553)
93 KOG3763 mRNA export factor TAP 29.4 35 0.00075 39.3 2.2 41 306-346 243-285 (585)
94 TIGR00864 PCC polycystin catio 29.2 30 0.00065 47.8 2.0 33 855-887 1-33 (2740)
95 smart00367 LRR_CC Leucine-rich 26.2 16 0.00034 23.0 -0.7 10 183-192 3-12 (26)
96 PF04478 Mid2: Mid2 like cell 25.0 29 0.00063 32.7 0.6 8 964-971 51-58 (154)
97 PF04202 Mfp-3: Foot protein 3 24.5 70 0.0015 25.1 2.4 24 1-24 1-24 (71)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-71 Score=708.16 Aligned_cols=583 Identities=35% Similarity=0.560 Sum_probs=386.1
Q ss_pred CHHHHHHHHhhhccCCCCCCCccCCCCCCCCCCCccceeeEecCCCCceEEEEcCCCCCCCCCCCCCCcchhhhhhcccc
Q 001801 33 IESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRTYGA 112 (1011)
Q Consensus 33 ~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1011)
+++|++||++||+++.+|.+.+.+|. .+++||.|+||+|++ .++|+.|+|+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~----------------------- 79 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGK----------------------- 79 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCC-----------------------
Confidence 56899999999999988888889997 577899999999985 679999999984
Q ss_pred hhhhhccccCCccccccccCCCCCCEEECCCCCCCCCCCcccc-CCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCC
Q 001801 113 EYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLG-SMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVE 191 (1011)
Q Consensus 113 ~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~ 191 (1011)
.+.|.+++.+..+++|++|+|++|.+++.+|..+. .+++|++|+|++|++++.+|. +.+++|++|+|++
T Consensus 80 --------~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~ 149 (968)
T PLN00113 80 --------NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN 149 (968)
T ss_pred --------CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcC
Confidence 67788888999999999999999999888887655 899999999999998887774 3344455555444
Q ss_pred CCCcCCCCCCCCCCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCC
Q 001801 192 NSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQ 271 (1011)
Q Consensus 192 n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 271 (1011)
| .+++..|..++++++|++|++++|.+.+
T Consensus 150 n---------------------------------------------------~~~~~~p~~~~~l~~L~~L~L~~n~l~~ 178 (968)
T PLN00113 150 N---------------------------------------------------MLSGEIPNDIGSFSSLKVLDLGGNVLVG 178 (968)
T ss_pred C---------------------------------------------------cccccCChHHhcCCCCCEEECccCcccc
Confidence 3 3333333334444444444444444433
Q ss_pred ChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHH
Q 001801 272 NSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFL 351 (1011)
Q Consensus 272 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l 351 (1011)
. .|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..
T Consensus 179 ~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~- 255 (968)
T PLN00113 179 K--IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS- 255 (968)
T ss_pred c--CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-
Confidence 2 4444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccC
Q 001801 352 ANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGH 431 (1011)
Q Consensus 352 ~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~ 431 (1011)
++++++|++|++++|. +.+.+|..+.+
T Consensus 256 ------------------------l~~l~~L~~L~L~~n~-----------------------------l~~~~p~~l~~ 282 (968)
T PLN00113 256 ------------------------LGNLKNLQYLFLYQNK-----------------------------LSGPIPPSIFS 282 (968)
T ss_pred ------------------------HhCCCCCCEEECcCCe-----------------------------eeccCchhHhh
Confidence 4444444444444433 33333444444
Q ss_pred CCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCcccccee
Q 001801 432 FKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKL 511 (1011)
Q Consensus 432 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 511 (1011)
+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~---------------- 345 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFS---------------- 345 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCCc----------------
Confidence 44445555555555444555555555555555555554443332 2222222222222211111
Q ss_pred ecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccC
Q 001801 512 DLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLS 591 (1011)
Q Consensus 512 ~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~ 591 (1011)
+.+|.
T Consensus 346 --------------------------------~~~p~------------------------------------------- 350 (968)
T PLN00113 346 --------------------------------GEIPK------------------------------------------- 350 (968)
T ss_pred --------------------------------CcCCh-------------------------------------------
Confidence 11111
Q ss_pred ccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccC
Q 001801 592 GTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGS 671 (1011)
Q Consensus 592 ~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 671 (1011)
.+.. +++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..++.
T Consensus 351 --------------------------~l~~--~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 351 --------------------------NLGK--HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred --------------------------HHhC--CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 0000 234444455555555555555555555666666666666666666666
Q ss_pred CCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEE
Q 001801 672 LGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQIL 751 (1011)
Q Consensus 672 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 751 (1011)
+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|.+.+.+|..+ ..++|+.|
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L 480 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENL 480 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence 66666666666666666666666666666666666666666665554 56666666666666666666554 34788888
Q ss_pred EccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEE
Q 001801 752 DLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALID 831 (1011)
Q Consensus 752 ~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ld 831 (1011)
++++|++++.+|..+.++++| +.||
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L-------------------------------------------------------~~L~ 505 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSEL-------------------------------------------------------MQLK 505 (968)
T ss_pred ECcCCccCCccChhhhhhhcc-------------------------------------------------------CEEE
Confidence 888888888888877766665 5689
Q ss_pred ccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccc
Q 001801 832 LSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG 911 (1011)
Q Consensus 832 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 911 (1011)
|++|+++|.+|..++++++|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+.||+++|+++|
T Consensus 506 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCccCccccCCC-CCCCCC
Q 001801 912 EIPTSTQLQSFDASCFIGN-DLCGSP 936 (1011)
Q Consensus 912 ~iP~~~~~~~~~~~~~~~n-~lcg~~ 936 (1011)
.+|..+++.++...+|.|| .+||.+
T Consensus 586 ~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 586 SLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eCCCcchhcccChhhhcCCccccCCc
Confidence 9999999999999999999 899865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2e-56 Score=570.24 Aligned_cols=515 Identities=38% Similarity=0.566 Sum_probs=377.3
Q ss_pred CCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhh-CCCCCcEEEccCCCCcccCcccccCCCCCCE
Q 001801 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVF-GLSNLVYLDLGSNDFQGSIPVGLQNLTSLRH 311 (1011)
Q Consensus 233 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 311 (1011)
.+++.|++++|.+++..+..+..+++|++|+|++|.+.+. +|..+. .+++|++|++++|.+++.+|. +.+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCc--CChHHhccCCCCCEEECcCCccccccCc--cccCCCCE
Confidence 4567777777777776666666677777777777766543 554443 666666666666666666554 34566666
Q ss_pred EeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCcc
Q 001801 312 LDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVK 391 (1011)
Q Consensus 312 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~ 391 (1011)
|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.+++ +|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 66666666666666666666666666666666666666666665 66666666666666666666666666666555555
Q ss_pred CCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCcccc
Q 001801 392 MSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKG 471 (1011)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 471 (1011)
+.+.+|..++++++|++|++++|++++.+|..++++++|++|++++|.+.+
T Consensus 224 -----------------------------l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 224 -----------------------------LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred -----------------------------cCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 444555555555666666666666555555555555555555555555554
Q ss_pred ccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHh
Q 001801 472 YLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFW 551 (1011)
Q Consensus 472 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~ 551 (1011)
.+|. .+.++++|++ |++++|.+.+.+|..+.
T Consensus 275 ~~p~-~l~~l~~L~~------------------------------------------------L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 275 PIPP-SIFSLQKLIS------------------------------------------------LDLSDNSLSGEIPELVI 305 (968)
T ss_pred cCch-hHhhccCcCE------------------------------------------------EECcCCeeccCCChhHc
Confidence 4443 3333333333 33333333333332221
Q ss_pred hhcCcccccccccccccccCCCccccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEe
Q 001801 552 EASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLN 631 (1011)
Q Consensus 552 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~ 631 (1011)
. +++|+.|++++|.++ +.+|..+.. +++|+.|+
T Consensus 306 -~-----------------------l~~L~~L~l~~n~~~---------------------~~~~~~~~~--l~~L~~L~ 338 (968)
T PLN00113 306 -Q-----------------------LQNLEILHLFSNNFT---------------------GKIPVALTS--LPRLQVLQ 338 (968)
T ss_pred -C-----------------------CCCCcEEECCCCccC---------------------CcCChhHhc--CCCCCEEE
Confidence 1 222333333333222 222222222 56789999
Q ss_pred eccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCcccc
Q 001801 632 LENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG 711 (1011)
Q Consensus 632 L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 711 (1011)
+++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcc
Q 001801 712 DIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSL 791 (1011)
Q Consensus 712 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~ 791 (1011)
.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..++ .+
T Consensus 419 ~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~--------------------- 475 (968)
T PLN00113 419 ELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SK--------------------- 475 (968)
T ss_pred ECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cc---------------------
Confidence 9999887 899999999999999999999999999999999999999998887542 12
Q ss_pred cccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccC
Q 001801 792 YRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGA 871 (1011)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 871 (1011)
.|+.|||++|+++|.+|..+.++++|+.|+|++|+++|.+|..+++
T Consensus 476 ----------------------------------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 521 (968)
T PLN00113 476 ----------------------------------RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSS 521 (968)
T ss_pred ----------------------------------cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcC
Confidence 2378999999999999999999999999999999999999999999
Q ss_pred CCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccccCCCC-cccCccCccccCCCCCCC
Q 001801 872 MKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS-TQLQSFDASCFIGNDLCG 934 (1011)
Q Consensus 872 L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~lcg 934 (1011)
+++|++|+|++|.++|.+|..++.+++|+.||+++|+++|.+|.. ..+..+......+|.+.|
T Consensus 522 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999975 233344444456665544
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=3.8e-38 Score=322.78 Aligned_cols=486 Identities=23% Similarity=0.388 Sum_probs=321.1
Q ss_pred CCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEE
Q 001801 233 SSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHL 312 (1011)
Q Consensus 233 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 312 (1011)
..|+.+.+++|.++... ..+.++..|.+|++++|++.. .|++++.+..++.++.++|++. .+|+.++.+.+|+.+
T Consensus 45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~---lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQ---LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhhh---CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 34566666666666553 346677888888888888876 7888888888889999998887 788888888899999
Q ss_pred eCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccC
Q 001801 313 DLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKM 392 (1011)
Q Consensus 313 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 392 (1011)
++++|.+. .+|+.++.+..|+.++..+|+++ ..|..+.++. ++..+++.+|++....|..+ +++.|++++...|-
T Consensus 120 ~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~- 194 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS-KLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL- 194 (565)
T ss_pred hcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHH-HHHHhhccccchhhCCHHHH-HHHHHHhcccchhh-
Confidence 99999887 66778888888999998888887 5666777777 88888888888885544444 48888888776663
Q ss_pred CcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccc
Q 001801 393 SQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGY 472 (1011)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 472 (1011)
.+.+|..++.+.+|.-|++.+|++. ..| +|.+++.|+++.++.|++. .
T Consensus 195 -----------------------------L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~ 242 (565)
T KOG0472|consen 195 -----------------------------LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-M 242 (565)
T ss_pred -----------------------------hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-h
Confidence 5677888888999999999999987 455 7888999999999988887 4
Q ss_pred cChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhh
Q 001801 473 LSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWE 552 (1011)
Q Consensus 473 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~ 552 (1011)
+|.....+++++..||+.+|+++.. |..+.
T Consensus 243 lpae~~~~L~~l~vLDLRdNklke~-------------------------Pde~c------------------------- 272 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLKEV-------------------------PDEIC------------------------- 272 (565)
T ss_pred hHHHHhcccccceeeeccccccccC-------------------------chHHH-------------------------
Confidence 6666777888888888888877632 32222
Q ss_pred hcCcccccccccccccccCCCccccCCCcEEEccCcccCcc---C-CCcc-cCCceeec--ccccCCCCCChhhccCCCC
Q 001801 553 ASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT---L-PLIS-FQLESIDL--SNNAFSGSISPVLCNGMRG 625 (1011)
Q Consensus 553 ~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~---~-p~~~-~~L~~L~l--s~n~l~~~~~~~~~~~~~~ 625 (1011)
.+.+|++||+++|.+++..+.++++ .|+.|-+.+|.+... + .... .-|++|.= ..-.++..- .+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se-----~~--- 343 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE-----GG--- 343 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc-----cc---
Confidence 2345666666666666555556655 666666666665310 0 0000 00111100 000000000 00
Q ss_pred cccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCc---ccEEeCcCCcccccCCccccCCCCCcEE
Q 001801 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGS---LTLLHLQKNSLSGRIPESLSNCNRLVSL 702 (1011)
Q Consensus 626 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~L~~N~l~~~~p~~l~~l~~L~~L 702 (1011)
+-..-+ ...+..| ......+.+.|++++-+++ .+|........ ....+++.|++. .+|..+..+..+.+.
T Consensus 344 ~e~~~t----~~~~~~~-~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~ 416 (565)
T KOG0472|consen 344 TETAMT----LPSESFP-DIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTD 416 (565)
T ss_pred ccccCC----CCCCccc-chhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHH
Confidence 000000 0001111 1223345566666666666 44443333222 556666666665 566655555544433
Q ss_pred -EcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCC
Q 001801 703 -NMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGD 781 (1011)
Q Consensus 703 -~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~ 781 (1011)
.+++|.+ +.+|..+. .+++|..|+|++|.+. .+|.+++.+..|+.||+|.|+|. .+|+++..+..+
T Consensus 417 l~lsnn~i-sfv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l--------- 483 (565)
T KOG0472|consen 417 LVLSNNKI-SFVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL--------- 483 (565)
T ss_pred HHhhcCcc-ccchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH---------
Confidence 3333333 35565555 5677777777776666 56777777778888888888876 677765544433
Q ss_pred CCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccc
Q 001801 782 THPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHF 861 (1011)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 861 (1011)
+.+--++|++...-|..+.++.+|..|||.+|.+
T Consensus 484 ----------------------------------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 484 ----------------------------------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred ----------------------------------------------HHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 1223345777655556688999999999999999
Q ss_pred cccccccccCCCCCCEEeCcCCccc
Q 001801 862 SGRIPDSIGAMKSIEVIDFSNNQLS 886 (1011)
Q Consensus 862 ~g~ip~~l~~L~~L~~L~Ls~N~l~ 886 (1011)
. .||+.++++++|++|++++|.+.
T Consensus 518 q-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 518 Q-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred h-hCChhhccccceeEEEecCCccC
Confidence 8 88889999999999999999997
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-35 Score=315.05 Aligned_cols=364 Identities=23% Similarity=0.255 Sum_probs=215.4
Q ss_pred cEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEeccc
Q 001801 286 VYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSS 365 (1011)
Q Consensus 286 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~ 365 (1011)
+.|++++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.++....+.+..++ .|+.||||.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhh
Confidence 34555555555555555666666666666666665 4555444555566666666666665556666665 666666666
Q ss_pred CcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcC
Q 001801 366 QQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSI 445 (1011)
Q Consensus 366 n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l 445 (1011)
|.++..--.+|..-. ++++|+|++|.|
T Consensus 159 N~is~i~~~sfp~~~-----------------------------------------------------ni~~L~La~N~I 185 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKV-----------------------------------------------------NIKKLNLASNRI 185 (873)
T ss_pred chhhcccCCCCCCCC-----------------------------------------------------CceEEeeccccc
Confidence 666533323333333 444444444444
Q ss_pred CCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCcccc
Q 001801 446 SGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFW 525 (1011)
Q Consensus 446 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 525 (1011)
+..-...|.++.+|..|.|+.|+++. +|...|.++++|+.|+|..|++.......|..+++|+.|.+..|.+...-...
T Consensus 186 t~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 186 TTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred cccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 44444445555555555555555543 33334555555555555555555444555555555555555555555555555
Q ss_pred ccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCC-ccccCCCcEEEccCcccCccCCCcccCCcee
Q 001801 526 LLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESI 604 (1011)
Q Consensus 526 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L 604 (1011)
|..+.++++|+++.|++...-..|++ +++.|+.|++++|.|...-+. +..
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~Wsf---------------------------- 315 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSF---------------------------- 315 (873)
T ss_pred eeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhh----------------------------
Confidence 55566666666666655543333332 233444444444443322111 111
Q ss_pred ecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCc
Q 001801 605 DLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNS 684 (1011)
Q Consensus 605 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~ 684 (1011)
.++|++|+|++|+++..-++.|..+..|++|+|++|.++..-...|.++++|++|||++|.
T Consensus 316 -------------------tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 316 -------------------TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE 376 (873)
T ss_pred -------------------cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence 3567777777777776667777777777777777777776666667777777777777777
Q ss_pred ccccCC---ccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccC
Q 001801 685 LSGRIP---ESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGY 755 (1011)
Q Consensus 685 l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 755 (1011)
+++.+- ..|.++++|+.|++.+|++. .||...+..+..|++|||.+|.+...-|.+|..+ .|+.|.+..
T Consensus 377 ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 377 LSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 776553 34666777777778777776 6777666677777888888877777777777776 777666544
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-35 Score=314.20 Aligned_cols=365 Identities=22% Similarity=0.250 Sum_probs=286.9
Q ss_pred cEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcce
Q 001801 334 VHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLES 413 (1011)
Q Consensus 334 ~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~ 413 (1011)
+.|++++|+++...+..|.+++ +|+++++..|.++ .+|...+...+|+.|+|.+|.+
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~-nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I--------------------- 137 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLP-NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLI--------------------- 137 (873)
T ss_pred eeeeccccccccCcHHHHhcCC-cceeeeeccchhh-hcccccccccceeEEeeecccc---------------------
Confidence 3456666666655555666665 6666666666655 4555444445577777776663
Q ss_pred eeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCe
Q 001801 414 WDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNA 493 (1011)
Q Consensus 414 L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 493 (1011)
...-.+.+..++.|+.|||+.|.|+...-.+|..-.++++|+|++|+|+. +....|..+.+|..|.|+.|.
T Consensus 138 --------~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 138 --------SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred --------ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCc
Confidence 33333445566778888888888886655677777899999999999997 445589999999999999999
Q ss_pred eeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCC
Q 001801 494 LTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN 573 (1011)
Q Consensus 494 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 573 (1011)
++..+...|..+++|+.|+|..|++...---.|.++++|+.|.+.+|++...-...| -.
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F-y~-------------------- 267 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF-YG-------------------- 267 (873)
T ss_pred ccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce-ee--------------------
Confidence 999999999999999999999999976556678999999999999999874333322 22
Q ss_pred ccccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcE
Q 001801 574 LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRV 653 (1011)
Q Consensus 574 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 653 (1011)
+.++++|+|+.|+++ ..-..+++. +++|+.|++++|.|..+-++.|.-+++|++
T Consensus 268 ---l~kme~l~L~~N~l~---------------------~vn~g~lfg--Lt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 268 ---LEKMEHLNLETNRLQ---------------------AVNEGWLFG--LTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred ---ecccceeecccchhh---------------------hhhcccccc--cchhhhhccchhhhheeecchhhhccccee
Confidence 333344444443332 222233333 678999999999999888999999999999
Q ss_pred EecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChh--HhhccCCCcEEEecc
Q 001801 654 LNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTW--IGEKFSSMVILNLRS 731 (1011)
Q Consensus 654 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~~~l~~L~~L~L~~ 731 (1011)
|+|++|+++...++.|..+..|++|+|++|+++..--..|..+++|++|||++|.++..|.+. .+..+++|+.|++.+
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g 401 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG 401 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC
Confidence 999999999888999999999999999999999777788999999999999999999877643 345799999999999
Q ss_pred ccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCC
Q 001801 732 NIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYP 778 (1011)
Q Consensus 732 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~ 778 (1011)
|++...--.+|..+.+|++|||.+|.+...-|..|..+ .|.++.+.
T Consensus 402 Nqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 402 NQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 99997777889999999999999999998889999887 67666443
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=8.3e-38 Score=320.28 Aligned_cols=478 Identities=25% Similarity=0.386 Sum_probs=322.3
Q ss_pred CCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcE
Q 001801 256 ISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVH 335 (1011)
Q Consensus 256 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 335 (1011)
-..|+.+.+++|.+.. ....+.++..|.+|++.+|+++ ..|.+++.+..++.++.++|+++ .+|+.++.+.+|+.
T Consensus 44 qv~l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVK 118 (565)
T ss_pred hcchhhhhhccCchhh---ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhh
Confidence 3456667777777654 4555666777777777777766 55666677777777777777765 56666677777777
Q ss_pred EEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceee
Q 001801 336 ISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWD 415 (1011)
Q Consensus 336 L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~ 415 (1011)
++.++|.+. ..++.++.+. .++.++..+|+++ ..|..++.+.+|..+++.+|+
T Consensus 119 l~~s~n~~~-el~~~i~~~~-~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~------------------------ 171 (565)
T KOG0472|consen 119 LDCSSNELK-ELPDSIGRLL-DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK------------------------ 171 (565)
T ss_pred hhcccccee-ecCchHHHHh-hhhhhhccccccc-cCchHHHHHHHHHHhhccccc------------------------
Confidence 777777666 3444455554 6666666666666 445566666666666666655
Q ss_pred ccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeee
Q 001801 416 MTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT 495 (1011)
Q Consensus 416 L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 495 (1011)
+....|..+. ++.|++||...|.++ .+|+.++.+.+|+.|++..|++.. +| .|.+|..|++++++.|++.
T Consensus 172 -----l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~-lP--ef~gcs~L~Elh~g~N~i~ 241 (565)
T KOG0472|consen 172 -----LKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF-LP--EFPGCSLLKELHVGENQIE 241 (565)
T ss_pred -----hhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-CC--CCCccHHHHHHHhcccHHH
Confidence 4443444333 677777777777765 566667777777777777777764 33 3555555555555555443
Q ss_pred eecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCcc
Q 001801 496 LKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLS 575 (1011)
Q Consensus 496 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 575 (1011)
.+|+.....++++..||+.+|+++.....+.
T Consensus 242 -------------------------------------------------~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 242 -------------------------------------------------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred -------------------------------------------------hhHHHHhcccccceeeeccccccccCchHHH
Confidence 4556666666777777777777774333455
Q ss_pred ccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhc-----ccc
Q 001801 576 KATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMN-----FLY 650 (1011)
Q Consensus 576 ~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-----l~~ 650 (1011)
.+.+|..||+|+|.+++ +|..+++ + +|+.|.+.+|.+..+-.+-+.. ++.
T Consensus 273 lLrsL~rLDlSNN~is~----------------------Lp~sLgn--l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISS----------------------LPYSLGN--L-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred HhhhhhhhcccCCcccc----------------------CCccccc--c-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 55566666666666553 3333333 4 6888888888775322111111 111
Q ss_pred CcE----EecCCCcc----cccCC-c---cccCCCcccEEeCcCCcccccCCccccCCCC---CcEEEcCCCccccccCh
Q 001801 651 LRV----LNLGNNNF----TGNLP-P---SLGSLGSLTLLHLQKNSLSGRIPESLSNCNR---LVSLNMDGNQFSGDIPT 715 (1011)
Q Consensus 651 L~~----L~Ls~N~l----~~~~p-~---~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~ip~ 715 (1011)
|+. =-++.-.- .+..| . ....+.+.+.|++++-+++ .+|........ ....+++.|++. ++|.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk 405 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK 405 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhh
Confidence 111 01111100 01111 1 1223567888999998888 66766554444 788999999997 8998
Q ss_pred hHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccC
Q 001801 716 WIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSC 795 (1011)
Q Consensus 716 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 795 (1011)
.+. .+..+.+.-+.+|+..+-+|..++.+++|..|+|++|.+. .+|..++.+..|
T Consensus 406 ~L~-~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L----------------------- 460 (565)
T KOG0472|consen 406 RLV-ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL----------------------- 460 (565)
T ss_pred hhH-HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-----------------------
Confidence 876 5666655444444444578889999999999999998887 788877766555
Q ss_pred CCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCC
Q 001801 796 LPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSI 875 (1011)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 875 (1011)
+.||+|.|+|. .+|+.+..+..++.+--++|++....|+.+.+|.+|
T Consensus 461 --------------------------------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 461 --------------------------------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred --------------------------------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhc
Confidence 67999999987 889999988888888888899987777779999999
Q ss_pred CEEeCcCCcccccCCccccCCCCCCeEEcccCccc
Q 001801 876 EVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLS 910 (1011)
Q Consensus 876 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 910 (1011)
..|||.+|.+. .||..+++|++|+.|++++|+|.
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 99999999997 78999999999999999999998
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=1.2e-34 Score=326.68 Aligned_cols=243 Identities=28% Similarity=0.439 Sum_probs=144.1
Q ss_pred cCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEE
Q 001801 599 FQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLL 678 (1011)
Q Consensus 599 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 678 (1011)
.+++++++++|++++ +|.+++. +.+|+.++..+|+++ .+|..+...++|+.|.+..|.+. -+|+...++++|++|
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~--~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGA--CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHh--cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 345555555555553 4466655 567777777777774 56666666677777777777777 466666667777777
Q ss_pred eCcCCcccccCCccc-cCCC-CCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCc
Q 001801 679 HLQKNSLSGRIPESL-SNCN-RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756 (1011)
Q Consensus 679 ~L~~N~l~~~~p~~l-~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 756 (1011)
+|..|++. ..|+.+ .-.. +|..|+.+.|++. ..|..-....+.|+.|.+.+|.++...-..+.+...|+.|+|++|
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 77777776 344322 2222 2566666666665 444333334566666666666666665556666666667777766
Q ss_pred cccccccc-cccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCC
Q 001801 757 NLSGAIPK-CISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKN 835 (1011)
Q Consensus 757 ~l~~~~p~-~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N 835 (1011)
++. .+|. .+.++..| +.|+||+|
T Consensus 394 rL~-~fpas~~~kle~L-------------------------------------------------------eeL~LSGN 417 (1081)
T KOG0618|consen 394 RLN-SFPASKLRKLEEL-------------------------------------------------------EELNLSGN 417 (1081)
T ss_pred ccc-cCCHHHHhchHHh-------------------------------------------------------HHHhcccc
Confidence 665 3333 34443333 44566666
Q ss_pred cceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccC-CccccCCCCCCeEEcccCc
Q 001801 836 NFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEI-PRSVSNLTFLNLLNLSYNY 908 (1011)
Q Consensus 836 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~L~ls~N~ 908 (1011)
.++ .+|..+..+..|++|..-+|++. ..| ++.++++|+.+|+|.|+|+... |... .-++|++||+|+|.
T Consensus 418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 665 55566666666666666666665 444 5666666666666666665432 2222 22556666666664
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.4e-33 Score=318.03 Aligned_cols=480 Identities=28% Similarity=0.363 Sum_probs=261.4
Q ss_pred eeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCC
Q 001801 163 LNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSG 242 (1011)
Q Consensus 163 L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~ 242 (1011)
+|++.+++. .+|..+-+-..+++|+++.|.....+ .++..+ .-+|+.|++++
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~--------------------------~v~L~~l~lsn 54 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRP-LEFVEK--------------------------RVKLKSLDLSN 54 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCc-hHHhhh--------------------------eeeeEEeeccc
Confidence 455555555 56655555555666666666432222 222222 22244444444
Q ss_pred CCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCC
Q 001801 243 CQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSS 322 (1011)
Q Consensus 243 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 322 (1011)
|++... |..+..+.+|+.|+++.|.+.. .|.....+.+|++|.|.+|.+. ..|..+..+++|++|++++|++. .
T Consensus 55 n~~~~f-p~~it~l~~L~~ln~s~n~i~~---vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~ 128 (1081)
T KOG0618|consen 55 NQISSF-PIQITLLSHLRQLNLSRNYIRS---VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-P 128 (1081)
T ss_pred cccccC-CchhhhHHHHhhcccchhhHhh---Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-C
Confidence 444332 4455555666666666666554 5555666666666666666555 55555666666666666666654 4
Q ss_pred cchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhh
Q 001801 323 IPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDI 402 (1011)
Q Consensus 323 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 402 (1011)
+|..+..+..++.+..++|... ..++.. .++.+++..|.+.+.++..+..++.
T Consensus 129 ~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~--~ik~~~l~~n~l~~~~~~~i~~l~~--------------------- 181 (1081)
T KOG0618|consen 129 IPLVIEVLTAEEELAASNNEKI----QRLGQT--SIKKLDLRLNVLGGSFLIDIYNLTH--------------------- 181 (1081)
T ss_pred CchhHHhhhHHHHHhhhcchhh----hhhccc--cchhhhhhhhhcccchhcchhhhhe---------------------
Confidence 5555555555555555555111 011111 2334444444444333333333332
Q ss_pred hcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCC
Q 001801 403 FSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLS 482 (1011)
Q Consensus 403 ~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 482 (1011)
.|+|.+|.+. . ..+..+.+|+.|....|++... --.-+
T Consensus 182 ----------------------------------~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l-----~~~g~ 219 (1081)
T KOG0618|consen 182 ----------------------------------QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL-----EISGP 219 (1081)
T ss_pred ----------------------------------eeecccchhh-h--hhhhhccchhhhhhhhcccceE-----EecCc
Confidence 3444444443 1 1234444555555555554431 12234
Q ss_pred CccEEEccCCeeeeecCCCCCCccccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCccccccc
Q 001801 483 KLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNF 562 (1011)
Q Consensus 483 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~l 562 (1011)
+|+.|+.++|.++.. .. -....+++.++++.+++.. +|.|+..+.+|+.+++.+|++ ..+|..++. ..+|+.|.+
T Consensus 220 ~l~~L~a~~n~l~~~-~~-~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~-~~~L~~l~~ 294 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTL-DV-HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRL-VALPLRISR-ITSLVSLSA 294 (1081)
T ss_pred chheeeeccCcceee-cc-ccccccceeeecchhhhhc-chHHHHhcccceEecccchhH-HhhHHHHhh-hhhHHHHHh
Confidence 555555555555411 11 1123456666666666653 448888888888888888888 355555543 468899999
Q ss_pred ccccccccCCCccccCCCcEEEccCcccCccCCCcc----cCCceeecccccCCCCCChhhccCCCCcccEEeecccccc
Q 001801 563 SNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLIS----FQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFS 638 (1011)
Q Consensus 563 s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~----~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 638 (1011)
.+|.+.-..|......+|++|++..|++....+..+ ..+..+..+.|.+.... ......++.|+.|++.+|.++
T Consensus 295 ~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp--~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP--SYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc--cccchhhHHHHHHHHhcCccc
Confidence 999998766667778889999999998863333221 22444555555544221 112222445666666666666
Q ss_pred ccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHh
Q 001801 639 GEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIG 718 (1011)
Q Consensus 639 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 718 (1011)
...-+.+.+..+|+.|+|++|++.......+.+++.|+.|+|++|+++ .+|..+.++..|++|...+|++. .+| .+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~ 449 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA 449 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh
Confidence 655555666666666666666666322234556666666666666665 55666666666666666666665 555 333
Q ss_pred hccCCCcEEEecccccccc-CCccccCCCCCcEEEccCcc
Q 001801 719 EKFSSMVILNLRSNIFDGQ-FPTELCFLTSLQILDLGYNN 757 (1011)
Q Consensus 719 ~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~L~~L~Ls~N~ 757 (1011)
.++.|+.+|++.|.++.. +|... .-++|++||+++|.
T Consensus 450 -~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 450 -QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred -hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 466666666666666532 22222 12566666666664
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.4e-32 Score=292.25 Aligned_cols=254 Identities=24% Similarity=0.427 Sum_probs=149.2
Q ss_pred cCCCCCCEEECCCCCCCCC-CCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCC
Q 001801 131 LHFQHLNYLDLSGNSFGGG-IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLL 209 (1011)
Q Consensus 131 ~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L 209 (1011)
+-++..|-.|+++|.|+|. .|..+..+++++.|.|....+. .+|..++.|.+|++|.+++|+...+.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh----------- 71 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH----------- 71 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-----------
Confidence 3467788899999999865 8999999999999999998887 78988888888888888877432211
Q ss_pred cEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEE
Q 001801 210 QHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLD 289 (1011)
Q Consensus 210 ~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 289 (1011)
..+..++.||.+.++. |++... .+|..+..+..|+.||
T Consensus 72 -----------------GELs~Lp~LRsv~~R~------------------------N~LKns-GiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 72 -----------------GELSDLPRLRSVIVRD------------------------NNLKNS-GIPTDIFRLKDLTILD 109 (1255)
T ss_pred -----------------hhhccchhhHHHhhhc------------------------cccccC-CCCchhcccccceeee
Confidence 1223333344444443 333221 1455555555555555
Q ss_pred ccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCc
Q 001801 290 LGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE 369 (1011)
Q Consensus 290 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~ 369 (1011)
|++|++. ..|..+..-+++-+|+||+|+|..+....|.+++.|-.|||++|++. .+|..+..+. .|++|+|++|.+.
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLN 186 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhhhhcCCChhh
Confidence 5555555 45555555555555555555555322233445555556666666554 3344445554 5666666666554
Q ss_pred CCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcC
Q 001801 370 GQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLI 449 (1011)
Q Consensus 370 ~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 449 (1011)
...-..+..+++|++|.+++.+- -...+|..+..+.+|..+|+|.|++. .+
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqR----------------------------Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQR----------------------------TLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccc----------------------------hhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 33223333455555555555441 12345555556666666666666665 45
Q ss_pred cccccCCCcCcEEEeecCccc
Q 001801 450 PSSLGGLSSLERVVLSNNTLK 470 (1011)
Q Consensus 450 p~~l~~l~~L~~L~L~~n~l~ 470 (1011)
|+.+-.+++|+.|+|++|+|+
T Consensus 238 Pecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee
Confidence 555555555555555555554
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-31 Score=286.97 Aligned_cols=281 Identities=28% Similarity=0.457 Sum_probs=169.0
Q ss_pred ccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccCccCCCcccCCceee
Q 001801 526 LLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESID 605 (1011)
Q Consensus 526 l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ 605 (1011)
+....++-.|++++|+| +++|..++..+..|-+||+++|++....|.+..+..|++|++++|.+. ..+|+.
T Consensus 122 LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~------hfQLrQ-- 192 (1255)
T KOG0444|consen 122 LEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN------HFQLRQ-- 192 (1255)
T ss_pred hhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh------HHHHhc--
Confidence 33334444455555554 356666677777788888888888766666666666666666666543 011110
Q ss_pred cccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCccc-ccCCccccCCCcccEEeCcCCc
Q 001801 606 LSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFT-GNLPPSLGSLGSLTLLHLQKNS 684 (1011)
Q Consensus 606 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~L~~N~ 684 (1011)
+|. +++|++|.+++. +-+ ..+|.++..+.+|..+|++.|.
T Consensus 193 ---------LPs------mtsL~vLhms~T------------------------qRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 193 ---------LPS------MTSLSVLHMSNT------------------------QRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ---------Ccc------chhhhhhhcccc------------------------cchhhcCCCchhhhhhhhhccccccC
Confidence 010 334444444443 322 1245555555555555555555
Q ss_pred ccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccc-ccc
Q 001801 685 LSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSG-AIP 763 (1011)
Q Consensus 685 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p 763 (1011)
+. .+|+.+.++++|+.|+||+|+++ .+....+ .-.+|++|++++|+++ .+|..++.++.|+.|++.+|+++- .||
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 54 45555555555555555555554 3333333 3455666666666666 566666777777777777776542 466
Q ss_pred ccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCch
Q 001801 764 KCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPV 843 (1011)
Q Consensus 764 ~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~ 843 (1011)
..++.+.+|. .+..++|.+. ..|+
T Consensus 310 SGIGKL~~Le-------------------------------------------------------vf~aanN~LE-lVPE 333 (1255)
T KOG0444|consen 310 SGIGKLIQLE-------------------------------------------------------VFHAANNKLE-LVPE 333 (1255)
T ss_pred cchhhhhhhH-------------------------------------------------------HHHhhccccc-cCch
Confidence 6676666653 2344555554 6788
Q ss_pred hccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc---C--cccccCCC
Q 001801 844 EVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY---N--YLSGEIPT 915 (1011)
Q Consensus 844 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~---N--~l~g~iP~ 915 (1011)
.+..+..|+.|.|++|++. ..|+.+.-|+.|+.|||..|.=--..|.-=..-++|+.-|+.+ + .+.|..|.
T Consensus 334 glcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pa 409 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPA 409 (1255)
T ss_pred hhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhccCCcc
Confidence 8888999999999999988 8899999999999999998864433443322335666655543 2 46776664
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=1.2e-24 Score=223.91 Aligned_cols=428 Identities=24% Similarity=0.280 Sum_probs=237.0
Q ss_pred hccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCC
Q 001801 355 SASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKS 434 (1011)
Q Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~ 434 (1011)
|+.-..++|..|+|+...|.+|+.+++|+.|+|++|. ++..-|.+|..+++
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-----------------------------Is~I~p~AF~GL~~ 116 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-----------------------------ISFIAPDAFKGLAS 116 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccc-----------------------------hhhcChHhhhhhHh
Confidence 3455566666666665555566666666666666666 44445555555555
Q ss_pred CCEEEccC-CcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeec
Q 001801 435 LDSLFLSH-NSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDL 513 (1011)
Q Consensus 435 L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 513 (1011)
+.+|-+.+ |+|+......|+++.+|+.|.+.-|++.. ++...+..+++|..|.+.+|.+..+....|..+..++.+.+
T Consensus 117 l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 117 LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 55555444 66665555567777777777777777765 33346777777777777777777776667777777777777
Q ss_pred ccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccCcc
Q 001801 514 QSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGT 593 (1011)
Q Consensus 514 ~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~ 593 (1011)
..|.+.. ..+++.+... +..+.+ .+.+..-..-..+.+.++..+-+.-... +++.+
T Consensus 196 A~np~ic-----dCnL~wla~~-~a~~~i-------etsgarc~~p~rl~~~Ri~q~~a~kf~c-~~esl---------- 251 (498)
T KOG4237|consen 196 AQNPFIC-----DCNLPWLADD-LAMNPI-------ETSGARCVSPYRLYYKRINQEDARKFLC-SLESL---------- 251 (498)
T ss_pred hcCcccc-----ccccchhhhH-Hhhchh-------hcccceecchHHHHHHHhcccchhhhhh-hHHhH----------
Confidence 6665310 0000000000 000000 0001111111222222222111110000 00000
Q ss_pred CCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCC
Q 001801 594 LPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG 673 (1011)
Q Consensus 594 ~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 673 (1011)
.. .++.+.+...+-+..+...+++|+.|++++|+++++-+.+|.+...+++|.|..|++...-...|.++.
T Consensus 252 --------~s-~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls 322 (498)
T KOG4237|consen 252 --------PS-RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLS 322 (498)
T ss_pred --------HH-hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccc
Confidence 00 011111111122223334477888888888888888888888888888888888888766666788888
Q ss_pred cccEEeCcCCcccccCCccccCCCCCcEEEcCCCcccccc-ChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEE
Q 001801 674 SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDI-PTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILD 752 (1011)
Q Consensus 674 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i-p~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 752 (1011)
.|+.|+|.+|+|+...|..|..+.+|.+|+|-.|++...- -.|+++.+ +.+.-.|..|- +.-..++.++
T Consensus 323 ~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl--------r~~~~~~~~~C--q~p~~~~~~~ 392 (498)
T KOG4237|consen 323 GLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL--------RKKSVVGNPRC--QSPGFVRQIP 392 (498)
T ss_pred cceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH--------hhCCCCCCCCC--CCCchhcccc
Confidence 8888888888888888888888888888888887765221 12333222 12222222221 1223455566
Q ss_pred ccCccccc---cccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEE
Q 001801 753 LGYNNLSG---AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVAL 829 (1011)
Q Consensus 753 Ls~N~l~~---~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 829 (1011)
++++.+.. .-|+..+ +....-|++...... +.
T Consensus 393 ~~dv~~~~~~c~~~ee~~---------------------~~~s~~cP~~c~c~~------------------------tV 427 (498)
T KOG4237|consen 393 ISDVAFGDFRCGGPEELG---------------------CLTSSPCPPPCTCLD------------------------TV 427 (498)
T ss_pred chhccccccccCCccccC---------------------CCCCCCCCCCcchhh------------------------hh
Confidence 66554431 1121111 111111222211111 12
Q ss_pred EEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccC
Q 001801 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYN 907 (1011)
Q Consensus 830 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N 907 (1011)
..-|++.+. .+|..+- .....|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.+|++|.+|-+|||
T Consensus 428 vRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 428 VRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred Hhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 223333332 3333221 13445889999998 77776 67788 8999999999888889999999999999997
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.2e-21 Score=245.14 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=88.3
Q ss_pred CcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEc
Q 001801 625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM 704 (1011)
Q Consensus 625 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 704 (1011)
++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|++|+|
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 467777777776666777777777777777777776555666655 5777777777777654455543 356777777
Q ss_pred CCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCcc
Q 001801 705 DGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNN 757 (1011)
Q Consensus 705 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 757 (1011)
++|.+. .+|.++. .+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus 854 s~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 777776 6777776 67777777777754444566677777777777777774
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=5.4e-24 Score=219.24 Aligned_cols=278 Identities=22% Similarity=0.223 Sum_probs=193.1
Q ss_pred CCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccC-CCCcccCcccccCCCCCCEE
Q 001801 234 SLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGS-NDFQGSIPVGLQNLTSLRHL 312 (1011)
Q Consensus 234 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L 312 (1011)
.-.+++|..|+|+.+.+.+|..+++|+.|||++|.|+.. .|.+|.+++.|.+|-+.+ |+|+......|+++..|+.|
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 456677778888888788888888888888888888765 777788887777776665 77776666677778888888
Q ss_pred eCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCc------------CCCchhccCCC
Q 001801 313 DLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLE------------GQIPRSFGRLC 380 (1011)
Q Consensus 313 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~------------~~~p~~l~~l~ 380 (1011)
.+.-|++.....+.|..+++|..|.+.+|.+...--..+..+. .++.+.+..|.+- ...|..++..+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-ccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 8887887777777777888888888877777644444566665 6777777776622 11222233333
Q ss_pred CCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCc-ccccCCCCCCEEEccCCcCCCcCcccccCCCcC
Q 001801 381 NLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLT-SQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSL 459 (1011)
Q Consensus 381 ~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 459 (1011)
...-..+.+.++.+.-..-+. +....+.+--.+.|...+..| ..|..+++|+.|++++|+++++-+.+|.+...+
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~----c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFL----CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ecchHHHHHHHhcccchhhhh----hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 333233333322221111110 000111111122333333333 458889999999999999999999999999999
Q ss_pred cEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCCCCccccceeecccCcCC
Q 001801 460 ERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLG 519 (1011)
Q Consensus 460 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 519 (1011)
++|.|..|++.. +....|.++..|+.|+|++|+|+...+.+|.....|.+|++-.|.+.
T Consensus 301 ~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 301 QELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 999999999985 55558999999999999999999999999999999999998887653
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=1.3e-20 Score=240.76 Aligned_cols=305 Identities=23% Similarity=0.238 Sum_probs=149.8
Q ss_pred ccceeecccCcCCCCccccccCCCCCCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEcc
Q 001801 507 QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLS 586 (1011)
Q Consensus 507 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls 586 (1011)
+|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+.. ++..+ ..+++|+.|+++++...+.+|.+..+++|++|+++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~-L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEK-LWDGV-HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccc-ccccc-ccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence 3555555555443 334333 34566666666666543 22222 34567777777776655666766666777777777
Q ss_pred CcccCccCCCc---ccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccc
Q 001801 587 SNNLSGTLPLI---SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTG 663 (1011)
Q Consensus 587 ~n~l~~~~p~~---~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 663 (1011)
+|.....+|.. +.+|+.|++++|...+.+|..+ .+++|+.|++++|...+.+|.. ..+|++|++++|.+.
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE- 738 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-
Confidence 76655555543 2345555555544444444332 1344555555555443333322 234455555555544
Q ss_pred cCCccccCCCcccEEeCcCCccc-------ccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccc
Q 001801 664 NLPPSLGSLGSLTLLHLQKNSLS-------GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDG 736 (1011)
Q Consensus 664 ~~p~~l~~l~~L~~L~L~~N~l~-------~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~ 736 (1011)
.+|..+ .+++|+.|++.++... ...|......++|+.|++++|...+.+|.++. ++++|+.|++++|...+
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcC
Confidence 334333 2444444444442211 00111111223444444444444444444443 44444444444443333
Q ss_pred cCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCc
Q 001801 737 QFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGK 816 (1011)
Q Consensus 737 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 816 (1011)
.+|..+ ++++|+.|++++|.....+|..
T Consensus 817 ~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~--------------------------------------------------- 844 (1153)
T PLN03210 817 TLPTGI-NLESLESLDLSGCSRLRTFPDI--------------------------------------------------- 844 (1153)
T ss_pred eeCCCC-CccccCEEECCCCCcccccccc---------------------------------------------------
Confidence 344333 3444444444444322222211
Q ss_pred chhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCc
Q 001801 817 ELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQ 884 (1011)
Q Consensus 817 ~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~ 884 (1011)
...++.|+|++|.++ .+|..+..+++|+.|+|++|+--..+|..+..+++|+.+++++|.
T Consensus 845 -------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 -------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred -------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 112345666666665 456666666666666666633222456566666666666666664
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.9e-21 Score=227.67 Aligned_cols=259 Identities=25% Similarity=0.324 Sum_probs=154.9
Q ss_pred cccccccccccccCCC-ccccCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeecccc
Q 001801 558 YFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636 (1011)
Q Consensus 558 ~~L~ls~n~l~~~~~~-~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 636 (1011)
..|+++++.++ .+|. +. ++++.|++++|+++. +|..+++|++|++++|.++. +|.. .++|+.|++++|.
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-----p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-----PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-----ccccceeeccCCc
Confidence 34455555554 2332 21 345555666555553 44445556666666666553 3321 2456666666666
Q ss_pred ccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChh
Q 001801 637 FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTW 716 (1011)
Q Consensus 637 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 716 (1011)
++ .+|..+ .+|+.|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++ .+|..
T Consensus 274 L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l 340 (788)
T PRK15387 274 LT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL 340 (788)
T ss_pred hh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc
Confidence 65 233322 35666777777766 34432 3567777777777664 3432 134666677777775 45531
Q ss_pred HhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCC
Q 001801 717 IGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCL 796 (1011)
Q Consensus 717 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 796 (1011)
..+|+.|+|++|++++ +|.. .++|+.|++++|.+++ +|... .
T Consensus 341 ----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~---~-------------------------- 382 (788)
T PRK15387 341 ----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP---S-------------------------- 382 (788)
T ss_pred ----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc---c--------------------------
Confidence 2467777777777764 4432 2456667777777662 44311 1
Q ss_pred CCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCC
Q 001801 797 PRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIE 876 (1011)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~ 876 (1011)
.|+.|||++|+|++ +|... ++|+.|++++|+|++ +|... .+|+
T Consensus 383 -----------------------------~L~~LdLs~N~Lt~-LP~l~---s~L~~LdLS~N~Lss-IP~l~---~~L~ 425 (788)
T PRK15387 383 -----------------------------GLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLL 425 (788)
T ss_pred -----------------------------ccceEEecCCcccC-CCCcc---cCCCEEEccCCcCCC-CCcch---hhhh
Confidence 12567788888774 55432 467788888888874 66533 4567
Q ss_pred EEeCcCCcccccCCccccCCCCCCeEEcccCcccccCCC
Q 001801 877 VIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPT 915 (1011)
Q Consensus 877 ~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 915 (1011)
.|++++|+|+ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 7888888887 6788888888888888888888887765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.5e-21 Score=228.22 Aligned_cols=267 Identities=24% Similarity=0.370 Sum_probs=195.7
Q ss_pred CCEEecCCCCCCCCcchhHhhhcCcccccccccccccccCCCccccCCCcEEEccCcccCccCCCcccCCceeecccccC
Q 001801 532 LGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAF 611 (1011)
Q Consensus 532 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l 611 (1011)
-..|+++++.++ .+|..+. ++|+.|++.+|+++. +|.. +++|++|++++|+++ .+|..+++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~l--p~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPAL--PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCCC--CCCCcEEEecCCccC-cccCcccccceeeccCCch
Confidence 445666666665 3454442 356677777777663 4443 467888888888887 4566677888888888887
Q ss_pred CCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCc
Q 001801 612 SGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPE 691 (1011)
Q Consensus 612 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 691 (1011)
.. +|.. .++|+.|++++|+++. +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.
T Consensus 275 ~~-Lp~l-----p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~ 339 (788)
T PRK15387 275 TH-LPAL-----PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPT 339 (788)
T ss_pred hh-hhhc-----hhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-ccc
Confidence 63 3332 3568889999998874 4542 4679999999999985 4542 2467888999999874 564
Q ss_pred cccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCcccccccccccccccc
Q 001801 692 SLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA 771 (1011)
Q Consensus 692 ~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 771 (1011)
. ..+|++|+|++|+++ .+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|... +.
T Consensus 340 l---p~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~---s~ 403 (788)
T PRK15387 340 L---PSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP---SE 403 (788)
T ss_pred c---ccccceEecCCCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc---cC
Confidence 2 257899999999998 57752 4678889999999984 6654 3578999999999984 55321 11
Q ss_pred CccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccC
Q 001801 772 MVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVAL 851 (1011)
Q Consensus 772 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L 851 (1011)
|+.||+|+|+|++ +|... .+|
T Consensus 404 -------------------------------------------------------L~~LdLS~N~Lss-IP~l~---~~L 424 (788)
T PRK15387 404 -------------------------------------------------------LKELMVSGNRLTS-LPMLP---SGL 424 (788)
T ss_pred -------------------------------------------------------CCEEEccCCcCCC-CCcch---hhh
Confidence 2578999999985 67543 467
Q ss_pred ceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCC
Q 001801 852 RSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLT 897 (1011)
Q Consensus 852 ~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~ 897 (1011)
+.|+|++|+|+ .+|..++++++|+.|+|++|.|+|.+|..+..++
T Consensus 425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~ 469 (788)
T PRK15387 425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 469 (788)
T ss_pred hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence 88999999998 7899999999999999999999999998875544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=3.4e-19 Score=212.02 Aligned_cols=118 Identities=29% Similarity=0.451 Sum_probs=53.3
Q ss_pred cccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcC
Q 001801 626 ELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMD 705 (1011)
Q Consensus 626 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 705 (1011)
+|+.|++++|+++ .+|..+. .+|+.|+|++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECC
Confidence 4455555555544 2333322 24555555555554 3444332 24555555555554 2344332 345555555
Q ss_pred CCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCcccc
Q 001801 706 GNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759 (1011)
Q Consensus 706 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 759 (1011)
+|+++ .+|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.++
T Consensus 292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt 338 (754)
T PRK15370 292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT 338 (754)
T ss_pred CCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCccc
Confidence 55554 3443321 244555555555542 333221 34555555555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=3.1e-19 Score=212.43 Aligned_cols=246 Identities=24% Similarity=0.402 Sum_probs=159.8
Q ss_pred CCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEecC
Q 001801 578 TGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLG 657 (1011)
Q Consensus 578 ~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 657 (1011)
+.++.|++++|+++...+....+|+.|++++|.++ .+|..+ .++|+.|++++|++. .+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lt-sLP~~l----~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQGNIKTLYANSNQLT-SIPATL----PDTIQEMELSINRIT-ELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhccCCCEEECCCCccc-cCChhh----hccccEEECcCCccC-cCChhHh--CCCCEEECc
Confidence 34555666666555332233446666666666665 344433 236778888888877 5566554 468888888
Q ss_pred CCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEecccccccc
Q 001801 658 NNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQ 737 (1011)
Q Consensus 658 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~ 737 (1011)
+|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++
T Consensus 271 ~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 271 HNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS- 339 (754)
T ss_pred CCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-
Confidence 88887 4666553 478888888888873 555443 46888888888887 567654 3678888888888875
Q ss_pred CCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceEEEecCcc
Q 001801 738 FPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKE 817 (1011)
Q Consensus 738 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1011)
+|..+. ++|+.|++++|+++ .+|..+. +
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~----------------------------------------------- 367 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQIT-VLPETLP--P----------------------------------------------- 367 (754)
T ss_pred CChhhc--CcccEEECCCCCCC-cCChhhc--C-----------------------------------------------
Confidence 666553 68888888888886 4554321 1
Q ss_pred hhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccc----cCCCCCCEEeCcCCcccccCCccc
Q 001801 818 LEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSI----GAMKSIEVIDFSNNQLSEEIPRSV 893 (1011)
Q Consensus 818 ~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l----~~L~~L~~L~Ls~N~l~~~ip~~l 893 (1011)
.|+.|||++|+|+ .+|..+. ..|+.|++++|+|+ .+|..+ +.++.+..|++.+|.++. ..+
T Consensus 368 --------~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl 432 (754)
T PRK15370 368 --------TITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTI 432 (754)
T ss_pred --------CcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHH
Confidence 1256888888887 4566554 36888888888887 455443 445777888888888873 233
Q ss_pred cCCCCCCeEEcccCcccccC
Q 001801 894 SNLTFLNLLNLSYNYLSGEI 913 (1011)
Q Consensus 894 ~~l~~L~~L~ls~N~l~g~i 913 (1011)
..|+.+ ++.+.+.|++
T Consensus 433 ---~~L~~L-l~s~~~~gp~ 448 (754)
T PRK15370 433 ---QNMQRL-MSSVGYQGPR 448 (754)
T ss_pred ---HHHHHh-hhcccccCCc
Confidence 333333 4455555543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=2.4e-17 Score=183.40 Aligned_cols=166 Identities=22% Similarity=0.298 Sum_probs=94.7
Q ss_pred CCCCEEEcCCCCCCCC----CCCCCCCC-CCccEEECCCCCCCCC--hhhhHhhhCCCCCcEEEccCCCCccc----Ccc
Q 001801 233 SSLRVLRLSGCQLDHF----HPPPIVNI-SSISVLDLSSNQFDQN--SLVLSWVFGLSNLVYLDLGSNDFQGS----IPV 301 (1011)
Q Consensus 233 ~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~ 301 (1011)
++|++|++++|++++. ....+..+ ++|+.|++++|.+++. ..++..+..+++|++|++++|.+++. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 3366666666655531 11223344 5666666666666532 11344555666777777777776642 233
Q ss_pred cccCCCCCCEEeCCCCCCCCC----cchhccCCCCCcEEEccCCCCCCchhhHHHhh----hccccEEecccCcCcC---
Q 001801 302 GLQNLTSLRHLDLSYNDFNSS----IPNWLASFSNLVHISLRSNSLQGSITGFLANL----SASIEVLDLSSQQLEG--- 370 (1011)
Q Consensus 302 ~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l----~~~L~~L~Ls~n~l~~--- 370 (1011)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+... .+.|++|++++|.++.
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 445556777777777776543 23344566777777777777765333333322 1267777777776652
Q ss_pred -CCchhccCCCCCCEEEccCccCCcchhH
Q 001801 371 -QIPRSFGRLCNLREISLSDVKMSQDISE 398 (1011)
Q Consensus 371 -~~p~~l~~l~~L~~L~L~~n~~~~~~~~ 398 (1011)
.+...+..+++|+++++++|.+......
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 2233445556777777777776544333
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=2.9e-17 Score=182.74 Aligned_cols=60 Identities=30% Similarity=0.257 Sum_probs=33.0
Q ss_pred CCCCEEEccCCcCCC----cCcccccCCCcCcEEEeecCccccc----cChhhhcCC-CCccEEEccCCe
Q 001801 433 KSLDSLFLSHNSISG----LIPSSLGGLSSLERVVLSNNTLKGY----LSEIHLANL-SKLVSFDVSGNA 493 (1011)
Q Consensus 433 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l-~~L~~L~L~~n~ 493 (1011)
+.|++|++++|.+++ .+...+..+++|+++++++|.+... +.. .+... +.|+++++.+|+
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE-SLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH-HHhhcCCchhhcccCCCC
Confidence 556666666666652 1223344556677777777766643 222 12222 567777776664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=4.5e-18 Score=155.68 Aligned_cols=81 Identities=25% Similarity=0.474 Sum_probs=43.6
Q ss_pred EEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCC---CCeEEccc
Q 001801 830 IDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTF---LNLLNLSY 906 (1011)
Q Consensus 830 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~---L~~L~ls~ 906 (1011)
|+|++|.|. .+|.+++++++|+.|.+..|.+- ..|.+++.|++|++|.+.+|+++ .+|..++++.- =+.+.+.+
T Consensus 132 lyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~ 208 (264)
T KOG0617|consen 132 LYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEE 208 (264)
T ss_pred HHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhh
Confidence 344444443 45555566666666666666655 55666666666666666666665 44444444432 12334455
Q ss_pred CcccccC
Q 001801 907 NYLSGEI 913 (1011)
Q Consensus 907 N~l~g~i 913 (1011)
|+..-+|
T Consensus 209 NPwv~pI 215 (264)
T KOG0617|consen 209 NPWVNPI 215 (264)
T ss_pred CCCCChH
Confidence 6655444
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=6.7e-18 Score=154.54 Aligned_cols=119 Identities=28% Similarity=0.543 Sum_probs=55.6
Q ss_pred cccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEE
Q 001801 648 FLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727 (1011)
Q Consensus 648 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 727 (1011)
+...+.|.|++|+++ .+|+.++.+.+|+.|++++|++. .+|.+++.+++|+.|+++-|++. .+|..++ .++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence 344445555555555 34445555555555555555554 44555555555555555555544 4444444 34444444
Q ss_pred Eecccccc-ccCCccccCCCCCcEEEccCcccccccccccccccc
Q 001801 728 NLRSNIFD-GQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSA 771 (1011)
Q Consensus 728 ~L~~N~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 771 (1011)
||.+|.+. ..+|..|..++.|+.|+|++|.|. .+|..++++++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~ 151 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN 151 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc
Confidence 44444443 223444444444444444444443 33333333333
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.3e-14 Score=172.92 Aligned_cols=116 Identities=39% Similarity=0.623 Sum_probs=103.1
Q ss_pred eEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEccc
Q 001801 827 VALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSY 906 (1011)
Q Consensus 827 l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~ 906 (1011)
++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.||+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcc--cCccCccccCCC-CCCCCCCCCCCC
Q 001801 907 NYLSGEIPTSTQ--LQSFDASCFIGN-DLCGSPLSRNCT 942 (1011)
Q Consensus 907 N~l~g~iP~~~~--~~~~~~~~~~~n-~lcg~~~~~~c~ 942 (1011)
|+++|.+|..-. +.......+.+| .+||.|....|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999997521 122234457889 899977555674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=4.7e-13 Score=159.74 Aligned_cols=127 Identities=39% Similarity=0.625 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHhhhccCCCCCCCccCCCCCCCCCCCc----cceeeEecC--CCC--ceEEEEcCCCCCCCCCCCCCCcc
Q 001801 31 HCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCC----KWSGVVCDN--FTG--HVLELRLGNPLNHPISYHTSPAQ 102 (1011)
Q Consensus 31 ~~~~~~~~~ll~~k~~~~~~~~~~~~W~~~~~~~~~c----~w~gv~c~~--~~~--~v~~l~l~~~~~~~~~~~~~~~~ 102 (1011)
.+.++|.+||+++|+++.+|.. .+|. +..|| .|.||.|.. ..+ +|+.|+|+++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n------------- 428 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ------------- 428 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCCC-------------
Confidence 3577899999999999876532 4896 44553 799999952 222 5899999884
Q ss_pred hhhhhhcccchhhhhccccCCccccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCC
Q 001801 103 YSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLS 182 (1011)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~ 182 (1011)
.+.|.+|+.++++++|++|+|++|.+.|.+|..++.+++|++|+|++|.+++.+|..+++++
T Consensus 429 ------------------~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 429 ------------------GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred ------------------CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEeCCCCCC
Q 001801 183 KLQYLDLVENSE 194 (1011)
Q Consensus 183 ~L~~L~L~~n~~ 194 (1011)
+|++|+|++|.+
T Consensus 491 ~L~~L~Ls~N~l 502 (623)
T PLN03150 491 SLRILNLNGNSL 502 (623)
T ss_pred CCCEEECcCCcc
Confidence 999999999853
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.22 E-value=5.8e-13 Score=144.59 Aligned_cols=194 Identities=28% Similarity=0.474 Sum_probs=137.0
Q ss_pred CcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEc
Q 001801 625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM 704 (1011)
Q Consensus 625 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 704 (1011)
..-...|++.|++. .+|..++.+..|+.+.|..|.+- .+|..++++..|.+++|+.|+++ .+|..+..|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33455667777776 56777777777777777777776 66777777777777777777776 5666666655 777777
Q ss_pred CCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCC
Q 001801 705 DGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHP 784 (1011)
Q Consensus 705 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~ 784 (1011)
++|+++ .+|..++ .+.+|..||.+.|.+. .+|..++++.+|+.|.++.|++. .+|+.+..|+
T Consensus 151 sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------- 212 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------- 212 (722)
T ss_pred ecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------
Confidence 777776 6777776 6777777777777776 56677777777777777777776 4555443222
Q ss_pred CccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCcccccc
Q 001801 785 GITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGR 864 (1011)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 864 (1011)
|..||+|.|+++ .||-+|.+|+.|++|-|.+|.++ .
T Consensus 213 ------------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-S 248 (722)
T KOG0532|consen 213 ------------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-S 248 (722)
T ss_pred ------------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-C
Confidence 256888888887 78888888888888888888888 6
Q ss_pred ccccc---cCCCCCCEEeCcCCc
Q 001801 865 IPDSI---GAMKSIEVIDFSNNQ 884 (1011)
Q Consensus 865 ip~~l---~~L~~L~~L~Ls~N~ 884 (1011)
.|..+ |...--++|+..-++
T Consensus 249 PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 249 PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ChHHHHhccceeeeeeecchhcc
Confidence 66654 344455666666663
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=1e-12 Score=142.75 Aligned_cols=195 Identities=25% Similarity=0.432 Sum_probs=149.9
Q ss_pred cccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEE
Q 001801 648 FLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVIL 727 (1011)
Q Consensus 648 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 727 (1011)
+.--...|++.|++. .+|..+..+..|+.+.|..|.+. .+|+.+.++..|++|||+.|+++ .+|..++ .--|+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeE
Confidence 344566889999998 78888888899999999999998 78999999999999999999998 8888886 4568888
Q ss_pred EeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCccc
Q 001801 728 NLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIE 807 (1011)
Q Consensus 728 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1011)
-+++|+++ .+|..++.+..|..||.+.|.+. .+|..++++.+|.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr---------------------------------- 192 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLR---------------------------------- 192 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHH----------------------------------
Confidence 99999888 67888888888888888888887 6777777776663
Q ss_pred ceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccc
Q 001801 808 KAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE 887 (1011)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~ 887 (1011)
.|.+..|++. ..|+++..|+ |..||+|+|+++ .||-.|.+|+.|++|-|.+|.|.
T Consensus 193 ---------------------~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq- 247 (722)
T KOG0532|consen 193 ---------------------DLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ- 247 (722)
T ss_pred ---------------------HHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-
Confidence 2445556655 4566666544 777888888887 78888888888888888888886
Q ss_pred cCCcccc---CCCCCCeEEcccCc
Q 001801 888 EIPRSVS---NLTFLNLLNLSYNY 908 (1011)
Q Consensus 888 ~ip~~l~---~l~~L~~L~ls~N~ 908 (1011)
..|..+- ...-.++|+..-++
T Consensus 248 SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 248 SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CChHHHHhccceeeeeeecchhcc
Confidence 3454442 23335566665554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=2.4e-11 Score=139.13 Aligned_cols=199 Identities=31% Similarity=0.550 Sum_probs=116.3
Q ss_pred EEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCC-cccEEeCcCCcccccCCccccCCCCCcEEEcCCC
Q 001801 629 VLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLG-SLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGN 707 (1011)
Q Consensus 629 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 707 (1011)
.+++..|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4555556553222 23344466777777777777 4555566553 7777777777776 45566677777777777777
Q ss_pred ccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCcc
Q 001801 708 QFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGIT 787 (1011)
Q Consensus 708 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~ 787 (1011)
+++ .+|...+ ..+.|+.|++++|++. .+|..+.....|+.+++++|++. .++..+.+++.+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l--------------- 234 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL--------------- 234 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence 776 5665543 4667777777777776 45555445555667777766532 233333333332
Q ss_pred CCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccc
Q 001801 788 DCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPD 867 (1011)
Q Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 867 (1011)
..+.+++|++. .++..++.+++++.|++++|.++ .++.
T Consensus 235 ----------------------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~ 272 (394)
T COG4886 235 ----------------------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS 272 (394)
T ss_pred ----------------------------------------cccccCCceee-eccchhccccccceecccccccc-cccc
Confidence 22334455444 22455555566666666666666 3333
Q ss_pred cccCCCCCCEEeCcCCcccccCCcc
Q 001801 868 SIGAMKSIEVIDFSNNQLSEEIPRS 892 (1011)
Q Consensus 868 ~l~~L~~L~~L~Ls~N~l~~~ip~~ 892 (1011)
++.+.+++.||+++|.++...|..
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred -ccccCccCEEeccCccccccchhh
Confidence 566666666666666666555444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=3.3e-11 Score=137.95 Aligned_cols=200 Identities=33% Similarity=0.480 Sum_probs=163.7
Q ss_pred cEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCC-CCcEEEcCCCccccccChhHhhccCCCcEEEec
Q 001801 652 RVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCN-RLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR 730 (1011)
Q Consensus 652 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 730 (1011)
..++++.|.+...+ ..+..++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..+. .+++|+.|+++
T Consensus 96 ~~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 96 PSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred ceeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 46888898885333 34556688999999999998 6777777774 9999999999998 7776676 89999999999
Q ss_pred cccccccCCccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCCCCccCCcccccCCCCCCCCCCcccceE
Q 001801 731 SNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAF 810 (1011)
Q Consensus 731 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 810 (1011)
+|++. .+|...+.++.|+.|++++|++. .+|..+.....|
T Consensus 172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L-------------------------------------- 211 (394)
T COG4886 172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL-------------------------------------- 211 (394)
T ss_pred Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhh--------------------------------------
Confidence 99999 56666668899999999999998 666544333333
Q ss_pred EEecCcchhhhhhcceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCC
Q 001801 811 LVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIP 890 (1011)
Q Consensus 811 ~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip 890 (1011)
+.+++++|.+. .++..+..+..+..|.+++|++. .+|..++.+++++.|++++|.++...+
T Consensus 212 -----------------~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 212 -----------------EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred -----------------hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc
Confidence 56778888543 57788899999999999999998 447788999999999999999985544
Q ss_pred ccccCCCCCCeEEcccCcccccCCCC
Q 001801 891 RSVSNLTFLNLLNLSYNYLSGEIPTS 916 (1011)
Q Consensus 891 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 916 (1011)
++.+..++.|++++|.++...|..
T Consensus 273 --~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 273 --LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred --ccccCccCEEeccCccccccchhh
Confidence 899999999999999999887754
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=7.3e-12 Score=129.01 Aligned_cols=250 Identities=25% Similarity=0.318 Sum_probs=142.3
Q ss_pred ccccCCCCCCEEECCCCCCCCC----CCccccCCCCCCEeeCCCCCCCC----CCccc-------cCCCCCCCEEeCCCC
Q 001801 128 PSLLHFQHLNYLDLSGNSFGGG----IPRFLGSMGKLKYLNLSGAGFKG----MIPHQ-------LGNLSKLQYLDLVEN 192 (1011)
Q Consensus 128 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~~----~~p~~-------l~~l~~L~~L~L~~n 192 (1011)
+.+..+..+++++||+|.|... +...+.+.++|+..++++- ++| .+|.. +..+++|++||||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4556778999999999998533 5566777889999999863 333 34433 346678888888888
Q ss_pred CCcCCCCC---CCCCCCCCCcEEeCCCCCCCCccc--hHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCC
Q 001801 193 SELYVDNL---SWLPGLSLLQHLDLGGVNLGKAFD--WSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSN 267 (1011)
Q Consensus 193 ~~~~~~~~---~~l~~l~~L~~L~L~~~~~~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n 267 (1011)
.+...+.. ..+..++.|++|.|.+|.+..... +..++. +|. .......-+.|+++...+|
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~------~l~---------~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALF------ELA---------VNKKAASKPKLRVFICGRN 167 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHH------HHH---------HHhccCCCcceEEEEeecc
Confidence 54332211 134456777777777776654421 111110 000 0011223345555555555
Q ss_pred CCCCC--hhhhHhhhCCCCCcEEEccCCCCccc----CcccccCCCCCCEEeCCCCCCCCC----cchhccCCCCCcEEE
Q 001801 268 QFDQN--SLVLSWVFGLSNLVYLDLGSNDFQGS----IPVGLQNLTSLRHLDLSYNDFNSS----IPNWLASFSNLVHIS 337 (1011)
Q Consensus 268 ~l~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~ 337 (1011)
++... ..+...|...+.|+.+.++.|.+... +...+..+++|+.|||..|.++.. +...+..+++|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 55322 22444555566666666666655421 223456666677777766666532 233445566677777
Q ss_pred ccCCCCCCchh----hHHHhhhccccEEecccCcCcCC----CchhccCCCCCCEEEccCccCC
Q 001801 338 LRSNSLQGSIT----GFLANLSASIEVLDLSSQQLEGQ----IPRSFGRLCNLREISLSDVKMS 393 (1011)
Q Consensus 338 L~~n~l~~~~~----~~l~~l~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~ 393 (1011)
+++|.+...-. ..+....+.|++|.+.+|.++.. +.......+.|+.|+|++|.+.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 77776654332 22333333677777777766532 1123445677777888877763
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.08 E-value=1.7e-11 Score=126.28 Aligned_cols=219 Identities=22% Similarity=0.179 Sum_probs=121.1
Q ss_pred ccccccCCCCCCEEECCCCCCCCC----CCc-------cccCCCCCCEeeCCCCCCCCCCccc----cCCCCCCCEEeCC
Q 001801 126 INPSLLHFQHLNYLDLSGNSFGGG----IPR-------FLGSMGKLKYLNLSGAGFKGMIPHQ----LGNLSKLQYLDLV 190 (1011)
Q Consensus 126 l~~~l~~l~~L~~L~Ls~n~l~~~----~p~-------~l~~l~~L~~L~Ls~n~~~~~~p~~----l~~l~~L~~L~L~ 190 (1011)
+.+.+.+.+.|+..++++- ++|. +|. .+-.+++|++||||+|.+...-+.. +..+..|++|.|.
T Consensus 50 i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~ 128 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN 128 (382)
T ss_pred HHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh
Confidence 4456667778888888764 2332 443 3345668888888888876544433 3567888888888
Q ss_pred CCCCcCCCCC------------CCCCCCCCCcEEeCCCCCCCCc--cchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCC
Q 001801 191 ENSELYVDNL------------SWLPGLSLLQHLDLGGVNLGKA--FDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNI 256 (1011)
Q Consensus 191 ~n~~~~~~~~------------~~l~~l~~L~~L~L~~~~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l 256 (1011)
+|-+.....- ...+.-+.|+.+..+.|++.+. ..+...+...+.|+.+.+..|.|....
T Consensus 129 N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG------- 201 (382)
T KOG1909|consen 129 NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG------- 201 (382)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCch-------
Confidence 8854322211 1233456677777777766554 334555666666666666666554321
Q ss_pred CCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCccc----CcccccCCCCCCEEeCCCCCCCCCcchhc-----
Q 001801 257 SSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGS----IPVGLQNLTSLRHLDLSYNDFNSSIPNWL----- 327 (1011)
Q Consensus 257 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----- 327 (1011)
.......+..+++|+.|||.+|-++.. +...+..+++|+.|++++|.+...-...+
T Consensus 202 ---------------~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~ 266 (382)
T KOG1909|consen 202 ---------------VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK 266 (382)
T ss_pred ---------------hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh
Confidence 112334445555555555555555432 22334445555566665555543222222
Q ss_pred cCCCCCcEEEccCCCCCCch----hhHHHhhhccccEEecccCcC
Q 001801 328 ASFSNLVHISLRSNSLQGSI----TGFLANLSASIEVLDLSSQQL 368 (1011)
Q Consensus 328 ~~l~~L~~L~L~~n~l~~~~----~~~l~~l~~~L~~L~Ls~n~l 368 (1011)
...+.|+.|.+.+|.++..- ...+...+ .|+.|+|++|.+
T Consensus 267 ~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~-dL~kLnLngN~l 310 (382)
T KOG1909|consen 267 ESAPSLEVLELAGNEITRDAALALAACMAEKP-DLEKLNLNGNRL 310 (382)
T ss_pred ccCCCCceeccCcchhHHHHHHHHHHHHhcch-hhHHhcCCcccc
Confidence 13556666666666655322 12233333 677777777766
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.7e-11 Score=128.11 Aligned_cols=212 Identities=22% Similarity=0.192 Sum_probs=141.7
Q ss_pred cCCCCCCEEECCCCCCCCCC-CccccCCCCCCEeeCCCCCCCCCC--ccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCC
Q 001801 131 LHFQHLNYLDLSGNSFGGGI-PRFLGSMGKLKYLNLSGAGFKGMI--PHQLGNLSKLQYLDLVENSELYVDNLSWLPGLS 207 (1011)
Q Consensus 131 ~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~~~~~~--p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~ 207 (1011)
++++.|+...|.++...... ......|++++.|||+.|-+..-. -.-...+++|+.|+|+.|+......-..-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 57899999999998774321 146678999999999999887532 344577999999999999754333222233678
Q ss_pred CCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcE
Q 001801 208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVY 287 (1011)
Q Consensus 208 ~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 287 (1011)
.|+.|.++.|.++ ..++...+..+|+|+.|++..|...........-+..|+.|||++|.+.... .-...+.++.|+.
T Consensus 198 ~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-QGYKVGTLPGLNQ 275 (505)
T ss_pred hhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-cccccccccchhh
Confidence 8899999999888 5566677788899999999988644444455556778888888888876521 1244567778888
Q ss_pred EEccCCCCccc-Cccc-----ccCCCCCCEEeCCCCCCCCC-cchhccCCCCCcEEEccCCCCC
Q 001801 288 LDLGSNDFQGS-IPVG-----LQNLTSLRHLDLSYNDFNSS-IPNWLASFSNLVHISLRSNSLQ 344 (1011)
Q Consensus 288 L~Ls~n~l~~~-~p~~-----l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 344 (1011)
|+++.+.+... .|+. ...+++|++|++..|++... .-..+..+++|+.|.+..|.++
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 88887777643 2222 24556677777766666421 1122333444555554444443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.4e-10 Score=122.75 Aligned_cols=111 Identities=25% Similarity=0.260 Sum_probs=58.9
Q ss_pred CCCCCCEEEcCCCCCCCCCC-CCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccc-cCCCC
Q 001801 231 SLSSLRVLRLSGCQLDHFHP-PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTS 308 (1011)
Q Consensus 231 ~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~ 308 (1011)
++++|+++.|.++.+..... .....++.++.|||+.|-+.....+......+++|+.|+++.|.+........ ..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45555666666555544322 23445677777777777666544455556677777777777776653222111 13445
Q ss_pred CCEEeCCCCCCCCC-cchhccCCCCCcEEEccCC
Q 001801 309 LRHLDLSYNDFNSS-IPNWLASFSNLVHISLRSN 341 (1011)
Q Consensus 309 L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n 341 (1011)
|+.|.++.|.++-. +...+..+|+|+.|+|..|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 55555555555421 1112224455555555555
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.4e-09 Score=132.39 Aligned_cols=254 Identities=25% Similarity=0.283 Sum_probs=149.6
Q ss_pred ccccc-ccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCC
Q 001801 125 KINPS-LLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWL 203 (1011)
Q Consensus 125 ~l~~~-l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l 203 (1011)
.++.. |..+++|++|||++|.=-+.+|..++.+-+||||+|+++.+. .+|..+++|.+|.+||+..+...... ....
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~ 638 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGIL 638 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchh
Confidence 34443 567999999999998766779999999999999999999998 89999999999999999987432222 2234
Q ss_pred CCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCcc----EEECCCCCCCCChhhhHhh
Q 001801 204 PGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSIS----VLDLSSNQFDQNSLVLSWV 279 (1011)
Q Consensus 204 ~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~~~l 279 (1011)
..+++||+|.+..............+.++.+|+.+....... .....+..+.+|+ .+.+.++... ..+..+
T Consensus 639 ~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~---~~~~~~ 713 (889)
T KOG4658|consen 639 LELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR---TLISSL 713 (889)
T ss_pred hhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcccccc---eeeccc
Confidence 458899999887766444333444556666666666644433 1111222333333 2222222221 145566
Q ss_pred hCCCCCcEEEccCCCCcccCcccccC------CCCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHh
Q 001801 280 FGLSNLVYLDLGSNDFQGSIPVGLQN------LTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN 353 (1011)
Q Consensus 280 ~~l~~L~~L~Ls~n~l~~~~p~~l~~------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 353 (1011)
..+.+|+.|.+.++............ ++++..+...++... ..+.+....++|+.|.+..+.....+.+....
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~ 792 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKA 792 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHH
Confidence 67777777777777765322211111 122222222222211 22334445567777777777666555555555
Q ss_pred hhccccEEecccCcCcCC-CchhccCCCCCCEEEc
Q 001801 354 LSASIEVLDLSSQQLEGQ-IPRSFGRLCNLREISL 387 (1011)
Q Consensus 354 l~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L 387 (1011)
+. .++.+.+..+.+.+. .-...+.++++..+.+
T Consensus 793 ~~-~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 793 LL-ELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred hh-hcccEEecccccccceeeecCCCCceeEeccc
Confidence 44 555555555555544 2334444444444443
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=5.4e-09 Score=101.97 Aligned_cols=126 Identities=27% Similarity=0.368 Sum_probs=45.3
Q ss_pred hccccCcEEecCCCcccccCCcccc-CCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCC
Q 001801 646 MNFLYLRVLNLGNNNFTGNLPPSLG-SLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSM 724 (1011)
Q Consensus 646 ~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 724 (1011)
.+..++++|+|++|.++. + +.++ .+.+|+.|++++|.++.. +.+..++.|++|++++|+++ .++..+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 344467777777777773 3 2344 466777777777777632 34667777888888888877 4555544357788
Q ss_pred cEEEeccccccccC-CccccCCCCCcEEEccCccccccccc----cccccccCccccC
Q 001801 725 VILNLRSNIFDGQF-PTELCFLTSLQILDLGYNNLSGAIPK----CISNLSAMVTVDY 777 (1011)
Q Consensus 725 ~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~l~~ 777 (1011)
++|++++|++...- -..+..+++|+.|+|.+|+++.. +. .+..+++|+.+|.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 88888888776421 24566788888888888888743 32 2566777766654
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=4.8e-09 Score=102.29 Aligned_cols=104 Identities=34% Similarity=0.420 Sum_probs=25.5
Q ss_pred CCCEEEcCCCCCCCCCCCCCC-CCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccc-cCCCCCCE
Q 001801 234 SLRVLRLSGCQLDHFHPPPIV-NISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGL-QNLTSLRH 311 (1011)
Q Consensus 234 ~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~ 311 (1011)
++++|+|++|.|+.+ +.++ .+.+|+.|++++|.++.. +.+..+++|++|++++|.++.. .+.+ ..+++|++
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l----~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL----EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S------TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc----cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 444444444444443 1232 344555555555555431 2334455555555555555532 2222 24555555
Q ss_pred EeCCCCCCCCC-cchhccCCCCCcEEEccCCCCC
Q 001801 312 LDLSYNDFNSS-IPNWLASFSNLVHISLRSNSLQ 344 (1011)
Q Consensus 312 L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~ 344 (1011)
|++++|++... .-..+..+++|+.|++.+|.++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 65555555431 1133445555556666555554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=1.3e-09 Score=109.45 Aligned_cols=206 Identities=24% Similarity=0.311 Sum_probs=113.2
Q ss_pred cccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCC--CCCC
Q 001801 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVD--NLSW 202 (1011)
Q Consensus 125 ~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~--~~~~ 202 (1011)
.+|-.+.-+++|..+.+|.+.-. .|-+....-+-|+++...+..+.. .|. +-....+. |.....-.... ....
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~--D~~~~E~~t~~G~~~~~ 279 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILA--DPSGSEPSTSNGSALVS 279 (490)
T ss_pred ccccchHHhhhhheeeeeccchh-heeceeecCchhheeeeecccccc-ccc-ccchhhhc--CccCCCCCccCCceEEe
Confidence 44556667788888888877532 122222233567777777665542 111 11111111 22111111100 1112
Q ss_pred CCCCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCC
Q 001801 203 LPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGL 282 (1011)
Q Consensus 203 l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 282 (1011)
+..-+.|+++|+++|.++.. ...+.-.|.++.|++++|++.... .+..+++|+.||||+|.++. +-.|-..+
T Consensus 280 ~dTWq~LtelDLS~N~I~~i---DESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~---~~Gwh~KL 351 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI---DESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE---CVGWHLKL 351 (490)
T ss_pred cchHhhhhhccccccchhhh---hhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHh---hhhhHhhh
Confidence 22334566777777766554 334555677777777777776653 36667777777777777654 44455566
Q ss_pred CCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCC-cchhccCCCCCcEEEccCCCCCC
Q 001801 283 SNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSS-IPNWLASFSNLVHISLRSNSLQG 345 (1011)
Q Consensus 283 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~ 345 (1011)
.+++.|.|+.|.+.. ...++++-+|..||+++|++... --..++++|.|+++.|.+|.+.+
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 677777777776642 23455666677777777766532 12345666666666666666654
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.77 E-value=5.7e-09 Score=76.17 Aligned_cols=41 Identities=56% Similarity=1.042 Sum_probs=30.7
Q ss_pred CHHHHHHHHhhhccCC-CCCCCccCCCCCCC-CCCCccceeeEec
Q 001801 33 IESEREALLKFKKDLK-DPSNRLVSWNGAGD-GADCCKWSGVVCD 75 (1011)
Q Consensus 33 ~~~~~~~ll~~k~~~~-~~~~~~~~W~~~~~-~~~~c~w~gv~c~ 75 (1011)
+++|++||++||+++. +|.+.+.+|+. . .++||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 3689999999999998 57789999984 3 2799999999995
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.8e-09 Score=108.51 Aligned_cols=130 Identities=24% Similarity=0.288 Sum_probs=71.8
Q ss_pred CCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcCcCCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCC
Q 001801 331 SNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDR 410 (1011)
Q Consensus 331 ~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~ 410 (1011)
+.|+++||++|.++ .+..++.-.| .++.|++++|.+... ..+..+++|+.|||++|.+..
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~---------------- 343 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE---------------- 343 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhcc-ceeEEeccccceeee--hhhhhcccceEeecccchhHh----------------
Confidence 45566666666555 2333333334 666666666665532 235556666666666665221
Q ss_pred cceeeccCCcccccCcccccCCCCCCEEEccCCcCCCcCcccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEcc
Q 001801 411 LESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVS 490 (1011)
Q Consensus 411 L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 490 (1011)
+..+-..+-++++|.++.|.+... ..++.+-+|..||+++|+|...-....++++|-|+.+.+.
T Consensus 344 --------------~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 344 --------------CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred --------------hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 111222345566677777766533 3455666677777777776654333456666666666666
Q ss_pred CCeeee
Q 001801 491 GNALTL 496 (1011)
Q Consensus 491 ~n~l~~ 496 (1011)
+|++..
T Consensus 408 ~NPl~~ 413 (490)
T KOG1259|consen 408 GNPLAG 413 (490)
T ss_pred CCCccc
Confidence 666553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=7.9e-09 Score=82.71 Aligned_cols=60 Identities=42% Similarity=0.568 Sum_probs=38.2
Q ss_pred cCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcc
Q 001801 850 ALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYL 909 (1011)
Q Consensus 850 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l 909 (1011)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666666655445666666666666666666666666666666666666666654
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.72 E-value=1.3e-08 Score=124.10 Aligned_cols=180 Identities=24% Similarity=0.307 Sum_probs=101.9
Q ss_pred CCCCEEECCCCC--CCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcE
Q 001801 134 QHLNYLDLSGNS--FGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQH 211 (1011)
Q Consensus 134 ~~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 211 (1011)
+.|++|-+.+|. +....+++|..++.|++|||++|.--+.+|..+++|.+||+|+++++.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I----------------- 607 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI----------------- 607 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-----------------
Confidence 356666666664 3322334466677777777776665556777777777777777766532
Q ss_pred EeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEcc
Q 001801 212 LDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLG 291 (1011)
Q Consensus 212 L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls 291 (1011)
. .+|..+.+++.|.+|++..+.....++.....+++|++|.+..............+..+.+|+.+...
T Consensus 608 --------~---~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 608 --------S---HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred --------c---ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 2 23556677777777777766655555566666777777777665543333344555666666666654
Q ss_pred CCCCcccCcccccCCCCCC----EEeCCCCCCCCCcchhccCCCCCcEEEccCCCCC
Q 001801 292 SNDFQGSIPVGLQNLTSLR----HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ 344 (1011)
Q Consensus 292 ~n~l~~~~p~~l~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 344 (1011)
.... .+-..+..++.|+ .+.+.++... ..+..+..+.+|+.|.+.++.+.
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence 4332 1111222222222 2222222221 34455666777777777777665
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=2e-08 Score=80.36 Aligned_cols=60 Identities=30% Similarity=0.491 Sum_probs=56.2
Q ss_pred eeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcc
Q 001801 826 LVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQL 885 (1011)
Q Consensus 826 ~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l 885 (1011)
.|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468899999999987778999999999999999999988889999999999999999986
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=5.3e-09 Score=119.79 Aligned_cols=241 Identities=27% Similarity=0.302 Sum_probs=146.0
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcE
Q 001801 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQH 211 (1011)
Q Consensus 132 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 211 (1011)
.+..++.+++..|.+.. +-..++.+++|++|++.+|.+. .+...+..+++|++|++++|.+..+.. +..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc---hhhccchhh
Confidence 45666666677776643 3344667788888888888877 333336777888888888886554443 444555778
Q ss_pred EeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCC-CCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEc
Q 001801 212 LDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHP-PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDL 290 (1011)
Q Consensus 212 L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~L 290 (1011)
|++.+|.+.+... +..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.. ...+..+..+..+++
T Consensus 145 L~l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----i~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 145 LNLSGNLISDISG----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE----IEGLDLLKKLVLLSL 215 (414)
T ss_pred heeccCcchhccC----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc----ccchHHHHHHHHhhc
Confidence 8888887777543 4447777888888887777655 3 4667777888888887753 233444455555577
Q ss_pred cCCCCcccCcccccCCC--CCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCCCchhhHHHhhhccccEEecccCcC
Q 001801 291 GSNDFQGSIPVGLQNLT--SLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLDLSSQQL 368 (1011)
Q Consensus 291 s~n~l~~~~p~~l~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~Ls~n~l 368 (1011)
..|.++..-+ +..+. +|+.+++++|.+. ..+..+..+.++..+++.+|++...-. +...+ .+..+....+.+
T Consensus 216 ~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~-~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 216 LDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLP-KLSELWLNDNKL 289 (414)
T ss_pred ccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccc-hHHHhccCcchh
Confidence 7777663322 22223 3778888888776 233456667777777777777653221 11222 444555555554
Q ss_pred cCC---Cch-hccCCCCCCEEEccCccC
Q 001801 369 EGQ---IPR-SFGRLCNLREISLSDVKM 392 (1011)
Q Consensus 369 ~~~---~p~-~l~~l~~L~~L~L~~n~~ 392 (1011)
... ... .....+.++...+..+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cchhhhhccccccccccccccccccCcc
Confidence 321 111 134455566666665553
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=8.7e-09 Score=118.05 Aligned_cols=217 Identities=32% Similarity=0.353 Sum_probs=123.2
Q ss_pred CcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEc
Q 001801 625 GELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNM 704 (1011)
Q Consensus 625 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 704 (1011)
..++.+++..|.+.. +-..+..+.+|+.|++.+|++... ...+..+++|++|++++|.|+... .+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence 455555666665553 222345556666666666666632 222555666666666666665332 2444555666666
Q ss_pred CCCccccccChhHhhccCCCcEEEeccccccccCC-ccccCCCCCcEEEccCccccccccccccccccCccccCCCCCCC
Q 001801 705 DGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFP-TELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTH 783 (1011)
Q Consensus 705 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~~~~~~~~ 783 (1011)
++|.++ .++.. . .++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+...-. +.
T Consensus 148 ~~N~i~-~~~~~-~-~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-----~~------------- 205 (414)
T KOG0531|consen 148 SGNLIS-DISGL-E-SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-----LD------------- 205 (414)
T ss_pred ccCcch-hccCC-c-cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-----hH-------------
Confidence 666665 22221 1 25556666666666554322 1 3445555555555555541110 00
Q ss_pred CCccCCcccccCCCCCCCCCCcccceEEEecCcchhhhhhcceeEEEEccCCcceecCchhccccc--cCceeeccCccc
Q 001801 784 PGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLV--ALRSLNLSYNHF 861 (1011)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l 861 (1011)
....+..+++..|.++-.-+ +..+. .|+.+++++|++
T Consensus 206 ---------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 206 ---------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI 244 (414)
T ss_pred ---------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc
Confidence 01112334777777763322 12222 388999999999
Q ss_pred cccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccc
Q 001801 862 SGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG 911 (1011)
Q Consensus 862 ~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 911 (1011)
. .++..+..+..+..||+++|+++..- .+.....+..+..+.|++..
T Consensus 245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 245 S-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred c-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcc
Confidence 8 55566778899999999999987643 24455667777788887764
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=2.5e-08 Score=100.64 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=81.5
Q ss_pred CCCCCEEeCCCCCCcCCCCCCCCC-CCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCc
Q 001801 181 LSKLQYLDLVENSELYVDNLSWLP-GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSI 259 (1011)
Q Consensus 181 l~~L~~L~L~~n~~~~~~~~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 259 (1011)
...++.|.+.++.+-..+....++ .++.++++||.+|.++++.++...+.++|.|+.|+++.|.+...+...-...++|
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl 123 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNL 123 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccce
Confidence 334455555555444444444343 4678889999999999998888899999999999999999887654333567889
Q ss_pred cEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCC
Q 001801 260 SVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDF 295 (1011)
Q Consensus 260 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l 295 (1011)
++|-|.+..+... .....+..++.+++|.++.|++
T Consensus 124 ~~lVLNgT~L~w~-~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWT-QSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChh-hhhhhhhcchhhhhhhhccchh
Confidence 9999988877643 1334556777778888777743
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.7e-09 Score=105.74 Aligned_cols=182 Identities=28% Similarity=0.265 Sum_probs=116.6
Q ss_pred CCCCEEECCCCCCCCC-CCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcEE
Q 001801 134 QHLNYLDLSGNSFGGG-IPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHL 212 (1011)
Q Consensus 134 ~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 212 (1011)
++|++||||...++-. +-..+..|.+|+.|.|.++.+.+.+...+++-.+|+.|+|+.|...+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-------------- 250 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-------------- 250 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh--------------
Confidence 3588999998887644 4556778889999999999988888888888888888888877422211
Q ss_pred eCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCC-C-CCCccEEECCCCCCC-CChhhhHhhhCCCCCcEEE
Q 001801 213 DLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIV-N-ISSISVLDLSSNQFD-QNSLVLSWVFGLSNLVYLD 289 (1011)
Q Consensus 213 ~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~-l~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~ 289 (1011)
.....+.+++.|.+|++++|.++...-..+. . -++|+.|+++++.-. +..-+......+++|..||
T Consensus 251 -----------~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD 319 (419)
T KOG2120|consen 251 -----------ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD 319 (419)
T ss_pred -----------HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence 2234456677777777777765543221111 1 146777777765321 1111333345778888888
Q ss_pred ccCCC-CcccCcccccCCCCCCEEeCCCCCCCCCcchhc---cCCCCCcEEEccCCC
Q 001801 290 LGSND-FQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWL---ASFSNLVHISLRSNS 342 (1011)
Q Consensus 290 Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~n~ 342 (1011)
|++|. ++...-..|.+++.|++|.++.|.. .+|+.+ ...+.|.+|++.++-
T Consensus 320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 88764 3434445566777888888887763 455543 355677777776653
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.5e-08 Score=99.58 Aligned_cols=180 Identities=22% Similarity=0.166 Sum_probs=124.7
Q ss_pred CCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcE
Q 001801 208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVY 287 (1011)
Q Consensus 208 ~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 287 (1011)
.||+|||+...++.. .+...+..|++|+.|.+.++++.+.+...+++-..|+.|+++.+.--......-.+.+++.|.+
T Consensus 186 Rlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 366666666555432 2344567788888888888888888778888888899999887643222224456778999999
Q ss_pred EEccCCCCcccCcccc-cC-CCCCCEEeCCCCCCC---CCcchhccCCCCCcEEEccCCC-CCCchhhHHHhhhccccEE
Q 001801 288 LDLGSNDFQGSIPVGL-QN-LTSLRHLDLSYNDFN---SSIPNWLASFSNLVHISLRSNS-LQGSITGFLANLSASIEVL 361 (1011)
Q Consensus 288 L~Ls~n~l~~~~p~~l-~~-l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~L~~L 361 (1011)
|++++|.+....-..+ .. -++|+.|+++|+.-. ..+..-..++++|.+|||++|. ++......+..++ .|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hheee
Confidence 9999998775432222 22 257889999887421 1222233578999999999875 4444555667777 89999
Q ss_pred ecccCcCcCCCch---hccCCCCCCEEEccCcc
Q 001801 362 DLSSQQLEGQIPR---SFGRLCNLREISLSDVK 391 (1011)
Q Consensus 362 ~Ls~n~l~~~~p~---~l~~l~~L~~L~L~~n~ 391 (1011)
.++.|.. .+|. .+...++|.+|++.++-
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 9998863 4555 35677889999888765
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=6.1e-07 Score=89.62 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=43.3
Q ss_pred hCCCCCcEEEccCCCCccc----CcccccCCCCCCEEeCCCCCCCCCcchhc----c--CCCCCcEEEccCCCCCCch--
Q 001801 280 FGLSNLVYLDLGSNDFQGS----IPVGLQNLTSLRHLDLSYNDFNSSIPNWL----A--SFSNLVHISLRSNSLQGSI-- 347 (1011)
Q Consensus 280 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~--~l~~L~~L~L~~n~l~~~~-- 347 (1011)
..+++|+.||++.|-++-. +..++...+.|+.|.+..|-++..-..++ . ..++|..|...+|.+.+.+
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~ 290 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIIL 290 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceee
Confidence 3455556666665555432 12223344455666666665543222211 1 3455666666666544322
Q ss_pred ----hhHHH-hhhccccEEecccCcCc
Q 001801 348 ----TGFLA-NLSASIEVLDLSSQQLE 369 (1011)
Q Consensus 348 ----~~~l~-~l~~~L~~L~Ls~n~l~ 369 (1011)
+.... ++| -|..|.+.+|.+.
T Consensus 291 ~~~l~~~e~~~~p-~L~~le~ngNr~~ 316 (388)
T COG5238 291 DISLNEFEQDAVP-LLVDLERNGNRIK 316 (388)
T ss_pred eechhhhhhcccH-HHHHHHHccCcch
Confidence 12221 233 6666777777765
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.13 E-value=1.1e-06 Score=87.88 Aligned_cols=251 Identities=20% Similarity=0.175 Sum_probs=150.7
Q ss_pred ccCCCCCCEEECCCCCCCCC----CCccccCCCCCCEeeCCCCCCC---CCCc-------cccCCCCCCCEEeCCCCCCc
Q 001801 130 LLHFQHLNYLDLSGNSFGGG----IPRFLGSMGKLKYLNLSGAGFK---GMIP-------HQLGNLSKLQYLDLVENSEL 195 (1011)
Q Consensus 130 l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~~~---~~~p-------~~l~~l~~L~~L~L~~n~~~ 195 (1011)
+..+..+..+|||+|.|... +...+.+-++|+..+++.-... ..+| +.+-+|++|+..+||+|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34478889999999998544 4455666788888888864221 1223 33457778888888777432
Q ss_pred CCCCC---CCCCCCCCCcEEeCCCCCCCCccc--hHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCC
Q 001801 196 YVDNL---SWLPGLSLLQHLDLGGVNLGKAFD--WSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFD 270 (1011)
Q Consensus 196 ~~~~~---~~l~~l~~L~~L~L~~~~~~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 270 (1011)
..... ..++.-+.|.||.+++|.+..... +..++..+. . ....++-+.|++.....|++.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la--------~-------nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLA--------Y-------NKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHH--------H-------HhhhccCCCceEEEeccchhc
Confidence 21110 123444555555555555443311 111110000 0 011234467777777777775
Q ss_pred CCh--hhhHhhhCCCCCcEEEccCCCCccc-----CcccccCCCCCCEEeCCCCCCCCCc----chhccCCCCCcEEEcc
Q 001801 271 QNS--LVLSWVFGLSNLVYLDLGSNDFQGS-----IPVGLQNLTSLRHLDLSYNDFNSSI----PNWLASFSNLVHISLR 339 (1011)
Q Consensus 271 ~~~--~~~~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~L~ 339 (1011)
..+ .....+..-..|+++.+..|.+.-. +-..+..+.+|+.|||..|.++-.- ...+...+.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 421 1223344446899999999887633 2223567899999999999987532 2334456779999999
Q ss_pred CCCCCCchhhHHH----h-hhccccEEecccCcCcCCCchh-------ccCCCCCCEEEccCccCCcc
Q 001801 340 SNSLQGSITGFLA----N-LSASIEVLDLSSQQLEGQIPRS-------FGRLCNLREISLSDVKMSQD 395 (1011)
Q Consensus 340 ~n~l~~~~~~~l~----~-l~~~L~~L~Ls~n~l~~~~p~~-------l~~l~~L~~L~L~~n~~~~~ 395 (1011)
+|-++..-...+. . ..++|..|...+|...+.+... =.+++-|..|.+.+|.+...
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 9988765443322 1 1238888989888876544322 14567788888888887643
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=3.3e-07 Score=82.11 Aligned_cols=94 Identities=31% Similarity=0.491 Sum_probs=60.4
Q ss_pred ccEEeCcCCcccccCCcc---ccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEE
Q 001801 675 LTLLHLQKNSLSGRIPES---LSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQIL 751 (1011)
Q Consensus 675 L~~L~L~~N~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 751 (1011)
+..++|++|++- .+++. +.....|+..+|++|.+. .+|..+...++.+++|++++|.++ .+|.++..+++|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 444555555553 23332 233445666677777776 667666656677778888888777 567778888888888
Q ss_pred EccCccccccccccccccccC
Q 001801 752 DLGYNNLSGAIPKCISNLSAM 772 (1011)
Q Consensus 752 ~Ls~N~l~~~~p~~l~~l~~L 772 (1011)
+++.|++. ..|+-+..|.++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred ccccCccc-cchHHHHHHHhH
Confidence 88888876 455555445444
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.03 E-value=3.1e-07 Score=103.40 Aligned_cols=105 Identities=26% Similarity=0.289 Sum_probs=54.5
Q ss_pred CCcccEEeeccccccccCChhhhccccCcEEecCCCcccccCCcc-ccCCCcccEEeCcCCcccccCCccccCCCCCcEE
Q 001801 624 RGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPS-LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSL 702 (1011)
Q Consensus 624 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 702 (1011)
++.++.|+|++|++...- .+..++.|++|||++|.+. .+|.. ..++ .|+.|.+++|.++. -.++.++.+|+.|
T Consensus 186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t--L~gie~LksL~~L 259 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT--LRGIENLKSLYGL 259 (1096)
T ss_pred HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh--hhhHHhhhhhhcc
Confidence 345666666666665332 5555666666666666665 33331 1222 26666666666542 1345556666666
Q ss_pred EcCCCccccccChhHhhccCCCcEEEeccccc
Q 001801 703 NMDGNQFSGDIPTWIGEKFSSMVILNLRSNIF 734 (1011)
Q Consensus 703 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 734 (1011)
|+++|-+.+.-.-...-.+..|+.|.|.+|.+
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66666555332111111345566666666654
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=4.6e-06 Score=84.60 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=34.8
Q ss_pred CCCCCEEEccCCcCCCcCc-ccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeee
Q 001801 432 FKSLDSLFLSHNSISGLIP-SSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALT 495 (1011)
Q Consensus 432 l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 495 (1011)
+|++..+-+..|.+...-. ..+..++.+..|+|+.|+|..--.-..+..++.|..|.++++++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 3455556666665543211 233445555566666666655433345566666666666666554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=6.9e-07 Score=80.09 Aligned_cols=135 Identities=24% Similarity=0.351 Sum_probs=92.1
Q ss_pred cccEEeeccccccccCChhhhc---cccCcEEecCCCcccccCCcccc-CCCcccEEeCcCCcccccCCccccCCCCCcE
Q 001801 626 ELQVLNLENNSFSGEIPDCWMN---FLYLRVLNLGNNNFTGNLPPSLG-SLGSLTLLHLQKNSLSGRIPESLSNCNRLVS 701 (1011)
Q Consensus 626 ~L~~L~L~~n~l~~~~p~~~~~---l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 701 (1011)
.+..++|++|++- .+++.... ...|+..+|++|.+. .+|+.|. ..+.++.|+|++|+++ .+|+.+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3556777777764 34444433 345666788888888 4555554 3457888888888887 67888888888888
Q ss_pred EEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCCcEEEccCccccccccccc
Q 001801 702 LNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCI 766 (1011)
Q Consensus 702 L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 766 (1011)
|+++.|++. ..|.-++ .+.+|-.|+..+|... .+|-.+..-+..-..++.++++.+.-|..+
T Consensus 105 lNl~~N~l~-~~p~vi~-~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIA-PLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccccCccc-cchHHHH-HHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 888888887 6777777 4888888888888776 455444333333344556667766555443
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=1.2e-06 Score=98.86 Aligned_cols=102 Identities=28% Similarity=0.339 Sum_probs=45.3
Q ss_pred CcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEec
Q 001801 651 LRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLR 730 (1011)
Q Consensus 651 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 730 (1011)
|.+.+.++|.+. .+..++.-++.|+.|+|++|+++.. +.+..|+.|++|||++|.+. .+|..-...+ +|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 444444455444 3334444444555555555554422 14444555555555555554 3332211111 24555555
Q ss_pred cccccccCCccccCCCCCcEEEccCcccc
Q 001801 731 SNIFDGQFPTELCFLTSLQILDLGYNNLS 759 (1011)
Q Consensus 731 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 759 (1011)
+|.++.. .++.+|.+|+.||+++|-+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence 5544432 23444455555555555443
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.84 E-value=1.3e-06 Score=92.93 Aligned_cols=288 Identities=19% Similarity=0.103 Sum_probs=131.1
Q ss_pred CCCCEEECCCCCCCCC--CCccccCCCCCCEeeCCCCC-CCCCCcccc-CCCCCCCEEeCCCCCCcCCCCCCC-CCCCCC
Q 001801 134 QHLNYLDLSGNSFGGG--IPRFLGSMGKLKYLNLSGAG-FKGMIPHQL-GNLSKLQYLDLVENSELYVDNLSW-LPGLSL 208 (1011)
Q Consensus 134 ~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~-~~~~~p~~l-~~l~~L~~L~L~~n~~~~~~~~~~-l~~l~~ 208 (1011)
..|+.|.+.++.-.+. +-..-.+++++++|++.++. +++..-.++ ..+++|++|+|..|...+...+.. ..++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4688888888754333 33445678888888888875 333322333 457788888887764322222221 124555
Q ss_pred CcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEE
Q 001801 209 LQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYL 288 (1011)
Q Consensus 209 L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 288 (1011)
|++|+++.+.......+.....+++.++.+.++ ++.-.+...+...-..+..+.++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k------------------------GC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLK------------------------GCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhc------------------------ccccccHHHHHHHhccChHhhcc
Confidence 555555554332222222223333333333333 32211111111122233334444
Q ss_pred EccCCCC-cccC-cccccCCCCCCEEeCCCCCCCC-Ccchhc-cCCCCCcEEEccCCC-CCCchhhHHHhhhccccEEec
Q 001801 289 DLGSNDF-QGSI-PVGLQNLTSLRHLDLSYNDFNS-SIPNWL-ASFSNLVHISLRSNS-LQGSITGFLANLSASIEVLDL 363 (1011)
Q Consensus 289 ~Ls~n~l-~~~~-p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l-~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~L~~L~L 363 (1011)
++..|.. +..- -..=..+..|++|+.+++.-.+ ..-..+ .+.++|+.|-+..++ ++..-...++...+.|+.+++
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 4444422 1110 0011234555555555443211 111222 244556666665554 222222223322225666666
Q ss_pred ccCcCc--CCCchhccCCCCCCEEEccCccCCcchhHHHhhhcccccCCcceeeccCCcccccCcccccCCCCCCEEEcc
Q 001801 364 SSQQLE--GQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLS 441 (1011)
Q Consensus 364 s~n~l~--~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~p~~l~~l~~L~~L~Ls 441 (1011)
..+... +.+...-.+++.|+++.++.+....+..... +...-..+..|+.+.++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~------------------------l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRH------------------------LSSSSCSLEGLEVLELD 409 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhh------------------------hhhccccccccceeeec
Confidence 555432 1122222345666666666554221110000 01112334567777777
Q ss_pred CCcCC-CcCcccccCCCcCcEEEeecCcc
Q 001801 442 HNSIS-GLIPSSLGGLSSLERVVLSNNTL 469 (1011)
Q Consensus 442 ~n~l~-~~~p~~l~~l~~L~~L~L~~n~l 469 (1011)
++... ...-+.+..+++|+.+++.+++-
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechhh
Confidence 77543 23334456677888888777754
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.7e-05 Score=57.94 Aligned_cols=36 Identities=31% Similarity=0.615 Sum_probs=23.0
Q ss_pred cCceeeccCccccccccccccCCCCCCEEeCcCCccc
Q 001801 850 ALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLS 886 (1011)
Q Consensus 850 ~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~ 886 (1011)
+|++|++++|+|+ .+|+.+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666777777776 45556677777777777777666
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.67 E-value=3.1e-06 Score=90.00 Aligned_cols=85 Identities=27% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCcceeeccCCccc--ccCcccccCCCCCCEEEccCCcCCCcC-----cccccCCCcCcEEEeecCccccccChhhhcCC
Q 001801 409 DRLESWDMTGCKIF--GHLTSQIGHFKSLDSLFLSHNSISGLI-----PSSLGGLSSLERVVLSNNTLKGYLSEIHLANL 481 (1011)
Q Consensus 409 ~~L~~L~L~~~~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 481 (1011)
..|+.+++.+|... +.+...-.+++.|+.+.+++|...... ...-..+..|+.+.++++.....-....+..+
T Consensus 346 ~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c 425 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC 425 (483)
T ss_pred hhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC
Confidence 34555555554432 223333345777888888877532221 11123456677777777766544333455666
Q ss_pred CCccEEEccCCe
Q 001801 482 SKLVSFDVSGNA 493 (1011)
Q Consensus 482 ~~L~~L~L~~n~ 493 (1011)
++|+.+++.+++
T Consensus 426 ~~Leri~l~~~q 437 (483)
T KOG4341|consen 426 RNLERIELIDCQ 437 (483)
T ss_pred cccceeeeechh
Confidence 666666666554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.65 E-value=0.00012 Score=80.57 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=52.3
Q ss_pred ccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccccccccCCccccCCCCC
Q 001801 669 LGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSL 748 (1011)
Q Consensus 669 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L 748 (1011)
+..+.+++.|++++|.++ .+|. --.+|++|++++|.-...+|..+ .++|+.|++++|.....+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------cc
Confidence 445678999999999877 4562 23469999998865445677654 35888999988843334553 46
Q ss_pred cEEEccCccc
Q 001801 749 QILDLGYNNL 758 (1011)
Q Consensus 749 ~~L~Ls~N~l 758 (1011)
+.|++++|..
T Consensus 115 e~L~L~~n~~ 124 (426)
T PRK15386 115 RSLEIKGSAT 124 (426)
T ss_pred ceEEeCCCCC
Confidence 6777776554
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00022 Score=78.46 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=64.7
Q ss_pred cCCCcEEEccCcccCccCCCcccCCceeecccccCCCCCChhhccCCCCcccEEeeccccccccCChhhhccccCcEEec
Q 001801 577 ATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNL 656 (1011)
Q Consensus 577 ~~~L~~L~Ls~n~l~~~~p~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 656 (1011)
+..++.|++++|.++ .+|..+.+|+.|.++++.--..+|..+ .++|+.|++++|.....+|. +|+.|++
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPVLPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCCCCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccccc------ccceEEe
Confidence 344555555555444 334445556666665543333344333 23567777776632223443 3566666
Q ss_pred CCCccc--ccCCccccCCCcccEEeCcCCccc--ccCCccccCCCCCcEEEcCCCccccccChhHhhccCCCcEEEeccc
Q 001801 657 GNNNFT--GNLPPSLGSLGSLTLLHLQKNSLS--GRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSN 732 (1011)
Q Consensus 657 s~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N 732 (1011)
+.+... +.+|. +|+.|.+.+++.. ..+|.. --++|++|++++|... .+|..+ ..+|+.|+++.+
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L---P~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL---PESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc---cccCcEEEeccc
Confidence 655432 12332 4555655433211 011111 1146777777777654 344433 246777777665
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=5.2e-05 Score=55.35 Aligned_cols=38 Identities=47% Similarity=0.685 Sum_probs=32.5
Q ss_pred CCCCEEeCcCCcccccCCccccCCCCCCeEEcccCcccc
Q 001801 873 KSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSG 911 (1011)
Q Consensus 873 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 911 (1011)
++|++|++++|+|+ .+|..+++|++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 57999999999999 567789999999999999999874
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.50 E-value=5e-05 Score=90.88 Aligned_cols=84 Identities=26% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCC
Q 001801 206 LSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNL 285 (1011)
Q Consensus 206 l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 285 (1011)
+|+|++|.+++-.+... +......++++|+.||+|+++++.. ..++++++|++|.+.+-.+.... .-..+.++++|
T Consensus 147 LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~-~l~~LF~L~~L 222 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ-DLIDLFNLKKL 222 (699)
T ss_pred CcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh-hHHHHhcccCC
Confidence 44444444444433322 1334445556666666666555544 34455555555555554443210 22334445555
Q ss_pred cEEEccCC
Q 001801 286 VYLDLGSN 293 (1011)
Q Consensus 286 ~~L~Ls~n 293 (1011)
+.||+|..
T Consensus 223 ~vLDIS~~ 230 (699)
T KOG3665|consen 223 RVLDISRD 230 (699)
T ss_pred Ceeecccc
Confidence 55555443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00014 Score=70.38 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=72.5
Q ss_pred CCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcEE
Q 001801 133 FQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHL 212 (1011)
Q Consensus 133 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~L 212 (1011)
+.....+||++|.+.. ...|..+++|.+|.|++|+|+..-|.--.-+++|+.|.|.+|.+...+++..++.+++|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3567789999998842 24567889999999999999976666556678899999999999888888888888889988
Q ss_pred eCCCCCCCCc
Q 001801 213 DLGGVNLGKA 222 (1011)
Q Consensus 213 ~L~~~~~~~~ 222 (1011)
.+-+|.++..
T Consensus 119 tll~Npv~~k 128 (233)
T KOG1644|consen 119 TLLGNPVEHK 128 (233)
T ss_pred eecCCchhcc
Confidence 8888877654
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00011 Score=88.10 Aligned_cols=152 Identities=27% Similarity=0.354 Sum_probs=99.5
Q ss_pred CCCcEEeCCCCCCCCccchHHHhcC-CCCCCEEEcCCCCCCCCC-CCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCC
Q 001801 207 SLLQHLDLGGVNLGKAFDWSLAINS-LSSLRVLRLSGCQLDHFH-PPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN 284 (1011)
Q Consensus 207 ~~L~~L~L~~~~~~~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 284 (1011)
.+|++|++++...- ...|+..++. +|.|+.|.+++-.+.... .....++++|..||+|+.+++. ...++++++
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n----l~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN----LSGISRLKN 196 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC----cHHHhcccc
Confidence 34566666554332 2356666654 799999999887664432 2334577899999999988875 267788899
Q ss_pred CcEEEccCCCCcc-cCcccccCCCCCCEEeCCCCCCCCCc--c----hhccCCCCCcEEEccCCCCCCchhhHHHhhhcc
Q 001801 285 LVYLDLGSNDFQG-SIPVGLQNLTSLRHLDLSYNDFNSSI--P----NWLASFSNLVHISLRSNSLQGSITGFLANLSAS 357 (1011)
Q Consensus 285 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 357 (1011)
|+.|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+|+|+.||.++..+....-+.+-+-.++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 9988888776653 33345778899999999877654321 1 111247888888888777776655554443335
Q ss_pred ccEEec
Q 001801 358 IEVLDL 363 (1011)
Q Consensus 358 L~~L~L 363 (1011)
|+.+..
T Consensus 277 L~~i~~ 282 (699)
T KOG3665|consen 277 LQQIAA 282 (699)
T ss_pred Hhhhhh
Confidence 554443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00021 Score=72.36 Aligned_cols=118 Identities=24% Similarity=0.185 Sum_probs=86.9
Q ss_pred CCccccccccCCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCC--CCCCCCccccCCCCCCCEEeCCCCCCcCCCC
Q 001801 122 FGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGA--GFKGMIPHQLGNLSKLQYLDLVENSELYVDN 199 (1011)
Q Consensus 122 ~~g~l~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n--~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~ 199 (1011)
..|.+....-.+..|+.|++.+..++.. ..+-.+++|++|.++.| .+++.++....++++|++|+++.|++..+..
T Consensus 31 ~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst 108 (260)
T KOG2739|consen 31 GAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST 108 (260)
T ss_pred cCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc
Confidence 3455666666777788888777766532 33456789999999999 7777777777778999999999999888888
Q ss_pred CCCCCCCCCCcEEeCCCCCCCCccchH-HHhcCCCCCCEEEcC
Q 001801 200 LSWLPGLSLLQHLDLGGVNLGKAFDWS-LAINSLSSLRVLRLS 241 (1011)
Q Consensus 200 ~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~l~~l~~L~~L~Ls 241 (1011)
+..++.+.+|..|++..|..+...+.. ..+.-+++|+.|+-.
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 888888889999999988777654332 234456666666533
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.16 E-value=0.00066 Score=65.81 Aligned_cols=103 Identities=21% Similarity=0.230 Sum_probs=57.5
Q ss_pred cCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCcccc--ccChhHhhccCCCcEE
Q 001801 650 YLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSG--DIPTWIGEKFSSMVIL 727 (1011)
Q Consensus 650 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~~~~~l~~L~~L 727 (1011)
+...+||++|.+... +.|..++.|.+|.+++|+|+.+-|.--.-+++|+.|.|.+|.+.. .+-. +. .+++|++|
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La-~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LA-SCPKLEYL 118 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hc-cCCcccee
Confidence 455666666666522 235556666666666666665555444445566666666666541 1111 11 46666677
Q ss_pred EeccccccccC---CccccCCCCCcEEEccCc
Q 001801 728 NLRSNIFDGQF---PTELCFLTSLQILDLGYN 756 (1011)
Q Consensus 728 ~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N 756 (1011)
.+-+|.++..- -.-+..+++|+.||.+.=
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66666655321 123566777777776543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.24 E-value=0.012 Score=55.16 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=34.6
Q ss_pred hhccccCcEEecCCCcccccCCccccCCCcccEEeCcCCcccccCCccccCCCCCcEEEcCCCccccccChhHhhccCCC
Q 001801 645 WMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSM 724 (1011)
Q Consensus 645 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L 724 (1011)
|.++++|+.+.+.. .+...-...|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++...+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence 33444444444442 233233334444444444444443 3323333444444444444433 221 2333333234455
Q ss_pred cEEEeccccccccCCccccCCCCCcEEEccC
Q 001801 725 VILNLRSNIFDGQFPTELCFLTSLQILDLGY 755 (1011)
Q Consensus 725 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 755 (1011)
+.+++..+ +...-...+.+. .|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55554433 222222334443 555555443
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00015 Score=73.26 Aligned_cols=104 Identities=22% Similarity=0.233 Sum_probs=75.6
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCCCCCCEeeCCCCCCCCCCccccCCCCCCCEEeCCCCCCcCCCCCCCCCCCCCCcE
Q 001801 132 HFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQH 211 (1011)
Q Consensus 132 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~~l~~L~~ 211 (1011)
.+.+.+.|+..+|.+++. ....+|+.|++|.||-|.|+..-| +..|++|+.|.|..|.+..+..+..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356778899999988754 234578899999999999885544 7788899999999888777777777888888888
Q ss_pred EeCCCCCCCCccc---hHHHhcCCCCCCEEE
Q 001801 212 LDLGGVNLGKAFD---WSLAINSLSSLRVLR 239 (1011)
Q Consensus 212 L~L~~~~~~~~~~---~~~~l~~l~~L~~L~ 239 (1011)
|.|..|....... -...+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888776544321 123455566666664
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.16 E-value=0.01 Score=55.54 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=30.6
Q ss_pred hcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCC
Q 001801 229 INSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTS 308 (1011)
Q Consensus 229 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~ 308 (1011)
+.++++|+.+.+.. .+..+....|.++++|+.+.+..+ +... ....|.++++++.+.+.. .+.......|..+++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i--~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI--GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE---TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc--ceeeeecccccccccccc-ccccccccccccccc
Confidence 44445555555543 344444445555555555555443 3221 222344444455555543 222222333444555
Q ss_pred CCEEeCCC
Q 001801 309 LRHLDLSY 316 (1011)
Q Consensus 309 L~~L~Ls~ 316 (1011)
|+.+++..
T Consensus 83 l~~i~~~~ 90 (129)
T PF13306_consen 83 LKNIDIPS 90 (129)
T ss_dssp ECEEEETT
T ss_pred ccccccCc
Confidence 55555543
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.14 E-value=0.0029 Score=64.31 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=30.5
Q ss_pred hccccCcEEecCCCcccccCCccccCCCcccEEeCcCC--cccccCCccccCCCCCcEEEcCCCccc
Q 001801 646 MNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKN--SLSGRIPESLSNCNRLVSLNMDGNQFS 710 (1011)
Q Consensus 646 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 710 (1011)
..+..|+.|.+.+..++.. ..+-.+++|++|.++.| ++.+.++.....+++|++|++++|++.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 3344455555555444421 22334455555566555 444444444444455555555555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.75 E-value=0.0027 Score=74.95 Aligned_cols=175 Identities=26% Similarity=0.160 Sum_probs=101.9
Q ss_pred CCCCCCEEECCCCCCCCC--CCccccCCCCCCEeeCCCC-CCCCCC----ccccCCCCCCCEEeCCCCCCcCCCCCCCCC
Q 001801 132 HFQHLNYLDLSGNSFGGG--IPRFLGSMGKLKYLNLSGA-GFKGMI----PHQLGNLSKLQYLDLVENSELYVDNLSWLP 204 (1011)
Q Consensus 132 ~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~~~~~~----p~~l~~l~~L~~L~L~~n~~~~~~~~~~l~ 204 (1011)
.++.|+.|.+.++.-... +-.....+++|+.|+++++ ...... ......+++|+.|+++.+.......+..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 478888888888743332 3455667889999999873 222121 223456788999999988644444444444
Q ss_pred -CCCCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCC--CCCCCCCCCCccEEECCCCCCCCChhhhHhhhC
Q 001801 205 -GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHF--HPPPIVNISSISVLDLSSNQFDQNSLVLSWVFG 281 (1011)
Q Consensus 205 -~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 281 (1011)
.+++|++|.+..+.-.+...+......++.|++|++++|..... ......++++++.|.+.... .
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~------------~ 333 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN------------G 333 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC------------C
Confidence 38899999988777433345666777888999999998865311 11122335555554433221 1
Q ss_pred CCCCcEEEccCCCCc---ccCcccccCCCCCCEEeCCCCC
Q 001801 282 LSNLVYLDLGSNDFQ---GSIPVGLQNLTSLRHLDLSYND 318 (1011)
Q Consensus 282 l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~n~ 318 (1011)
+..++.+.+...... .........+++++.+.+.++.
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 223333333332221 1122234566667777666666
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.68 E-value=0.0049 Score=37.35 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=8.4
Q ss_pred CceeeccCcccccccccccc
Q 001801 851 LRSLNLSYNHFSGRIPDSIG 870 (1011)
Q Consensus 851 L~~L~Ls~N~l~g~ip~~l~ 870 (1011)
|++|||++|+|+ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344444444444 4444333
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.00095 Score=67.65 Aligned_cols=83 Identities=23% Similarity=0.273 Sum_probs=40.9
Q ss_pred CCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCCCCCCCCCCCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcE
Q 001801 208 LLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVY 287 (1011)
Q Consensus 208 ~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 287 (1011)
+.+.|++-+|.++++ ....+|+.|++|.|+-|+|+... .+..|++|+.|.|..|.|.... ....+.++++|+.
T Consensus 20 ~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sld-EL~YLknlpsLr~ 92 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLD-ELEYLKNLPSLRT 92 (388)
T ss_pred HhhhhcccCCCccHH----HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHH-HHHHHhcCchhhh
Confidence 344445555555443 23445566666666666655542 2445555555555555554321 1223445555555
Q ss_pred EEccCCCCcc
Q 001801 288 LDLGSNDFQG 297 (1011)
Q Consensus 288 L~Ls~n~l~~ 297 (1011)
|.|..|.-.+
T Consensus 93 LWL~ENPCc~ 102 (388)
T KOG2123|consen 93 LWLDENPCCG 102 (388)
T ss_pred HhhccCCccc
Confidence 5555544433
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.57 E-value=0.0062 Score=71.93 Aligned_cols=79 Identities=28% Similarity=0.285 Sum_probs=38.4
Q ss_pred ccCCCCCCEEEccCCcCCCcC-cccccCCCcCcEEEeecCccccccChhhhcCCCCccEEEccCCeeeeecCCCC-CC-c
Q 001801 429 IGHFKSLDSLFLSHNSISGLI-PSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDW-IP-P 505 (1011)
Q Consensus 429 l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~-~ 505 (1011)
...+++++.+.+..+...... ...+.+++.|+ ..+.. .......++.|+++.+.......... .. .
T Consensus 358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~----------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~ 426 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL----------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSC 426 (482)
T ss_pred HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH----------HhccCCccceEecccCccccccchHHHhhhh
Confidence 455677777777777643322 23344555552 11111 11222226777777765432221111 11 4
Q ss_pred cccceeecccCcC
Q 001801 506 FQLEKLDLQSCHL 518 (1011)
Q Consensus 506 ~~L~~L~L~~n~l 518 (1011)
..++.+++.++..
T Consensus 427 ~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 427 SNLKDLDLSGCRV 439 (482)
T ss_pred hccccCCccCccc
Confidence 5566777777654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0053 Score=37.20 Aligned_cols=22 Identities=50% Similarity=0.791 Sum_probs=15.1
Q ss_pred CCCEEeCcCCcccccCCccccCC
Q 001801 874 SIEVIDFSNNQLSEEIPRSVSNL 896 (1011)
Q Consensus 874 ~L~~L~Ls~N~l~~~ip~~l~~l 896 (1011)
+|++|||++|+++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677888888887 677666543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.37 E-value=0.00018 Score=82.53 Aligned_cols=67 Identities=28% Similarity=0.288 Sum_probs=37.6
Q ss_pred ccccCCCCCCEEECCCCCCCCC----CCccccCC-CCCCEeeCCCCCCCCC----CccccCCCCCCCEEeCCCCCC
Q 001801 128 PSLLHFQHLNYLDLSGNSFGGG----IPRFLGSM-GKLKYLNLSGAGFKGM----IPHQLGNLSKLQYLDLVENSE 194 (1011)
Q Consensus 128 ~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l-~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~L~~n~~ 194 (1011)
..+....+|..|++++|.+.+. +-..+... ..|++|++..|.+++. +...+.....++.++++.|.+
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 3455566777777777766543 11222222 4566666666666543 344455566666666666644
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.88 E-value=0.0018 Score=74.38 Aligned_cols=68 Identities=25% Similarity=0.259 Sum_probs=31.3
Q ss_pred hHhhhCCCCCcEEEccCCCCcccCcc----cccCC-CCCCEEeCCCCCCCC----CcchhccCCCCCcEEEccCCCC
Q 001801 276 LSWVFGLSNLVYLDLGSNDFQGSIPV----GLQNL-TSLRHLDLSYNDFNS----SIPNWLASFSNLVHISLRSNSL 343 (1011)
Q Consensus 276 ~~~l~~l~~L~~L~Ls~n~l~~~~p~----~l~~l-~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l 343 (1011)
...+.....|+.|++++|.+.+.--. .+... ..|++|++..|.++. .+.+.+.....++.++++.|.+
T Consensus 108 ~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 108 AQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 33444555566666666655532111 11111 344555555555443 2333444455555555555554
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.18 E-value=0.035 Score=55.15 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=69.6
Q ss_pred cceeEEEEccCCcceecCchhccccccCceeeccCccccccccccccCCCCCCEEeCcCCcccccCCccccCCCCCCeEE
Q 001801 824 LYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLN 903 (1011)
Q Consensus 824 ~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 903 (1011)
....+.||++.|++- ..-..|.-++.|..||+|.|.+. ..|..++++..+..+++..|..+ ..|.++..++.+..++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 345578999999875 34456777888889999999988 78888999999999999999887 5788899999999999
Q ss_pred cccCccc
Q 001801 904 LSYNYLS 910 (1011)
Q Consensus 904 ls~N~l~ 910 (1011)
+-.|+|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9888865
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=87.27 E-value=0.37 Score=27.02 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=3.7
Q ss_pred CcEEEcCCCcc
Q 001801 699 LVSLNMDGNQF 709 (1011)
Q Consensus 699 L~~L~Ls~N~l 709 (1011)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.76 E-value=0.58 Score=29.53 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=9.1
Q ss_pred CCCCEEeCcCCccccc
Q 001801 873 KSIEVIDFSNNQLSEE 888 (1011)
Q Consensus 873 ~~L~~L~Ls~N~l~~~ 888 (1011)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.76 E-value=0.58 Score=29.53 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=9.1
Q ss_pred CCCCEEeCcCCccccc
Q 001801 873 KSIEVIDFSNNQLSEE 888 (1011)
Q Consensus 873 ~~L~~L~Ls~N~l~~~ 888 (1011)
++|++|+|++|+|+..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.31 E-value=0.02 Score=56.82 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=65.4
Q ss_pred CCCCCCCCccEEECCCCCCCCChhhhHhhhCCCCCcEEEccCCCCcccCcccccCCCCCCEEeCCCCCCCCCcchhccCC
Q 001801 251 PPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASF 330 (1011)
Q Consensus 251 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 330 (1011)
..+...++.+.||++.|++.. ....|.-++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn---~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVN---LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred hhhhccceeeeehhhhhHHHh---hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence 445566777778888777654 4455666677778888877766 67777777788888888777776 667888888
Q ss_pred CCCcEEEccCCCCC
Q 001801 331 SNLVHISLRSNSLQ 344 (1011)
Q Consensus 331 ~~L~~L~L~~n~l~ 344 (1011)
++++++++..+.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 88888888887755
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.63 E-value=0.9 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=12.9
Q ss_pred CCCcEEEcCCCccccccChhHh
Q 001801 697 NRLVSLNMDGNQFSGDIPTWIG 718 (1011)
Q Consensus 697 ~~L~~L~Ls~N~l~~~ip~~~~ 718 (1011)
++|++|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5565543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.63 E-value=0.9 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=12.9
Q ss_pred CCCcEEEcCCCccccccChhHh
Q 001801 697 NRLVSLNMDGNQFSGDIPTWIG 718 (1011)
Q Consensus 697 ~~L~~L~Ls~N~l~~~ip~~~~ 718 (1011)
++|++|+|++|++. .+|...+
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666665 5565543
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=0.27 Score=48.36 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCCCEEeCCCCCCCCCcchhccCCCCCcEEEccCCCCC-CchhhHHHhhhccccEEecccCc-CcCCCchhccCCCCCCE
Q 001801 307 TSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQ-GSITGFLANLSASIEVLDLSSQQ-LEGQIPRSFGRLCNLRE 384 (1011)
Q Consensus 307 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~ 384 (1011)
..++.+|-++..+..+--+.+..++.++.|.+.+|.-- ..--+.+.+..++|+.|++++|. |+..--..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34555666666555544455556666666666665422 12223344444588888888775 55554556777888888
Q ss_pred EEccCccC
Q 001801 385 ISLSDVKM 392 (1011)
Q Consensus 385 L~L~~n~~ 392 (1011)
|.+.+-+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 88876553
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=80.60 E-value=0.31 Score=30.11 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=5.1
Q ss_pred cCceeeccCccccc
Q 001801 850 ALRSLNLSYNHFSG 863 (1011)
Q Consensus 850 ~L~~L~Ls~N~l~g 863 (1011)
+|+.|+|++|.|++
T Consensus 3 ~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 3 NLETLDLSNNQITD 16 (24)
T ss_dssp T-SEEE-TSSBEHH
T ss_pred CCCEEEccCCcCCH
Confidence 34444444444443
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.33 E-value=0.33 Score=47.72 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=14.0
Q ss_pred CCEEECCCCCCCCCCCccccCCCCCCEeeCCCC
Q 001801 136 LNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGA 168 (1011)
Q Consensus 136 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 168 (1011)
++.+|-+++.+..+--+-+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 344444444443333333344444444444444
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.72 E-value=4.7 Score=25.55 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=9.7
Q ss_pred CCCCCEEeCcCCccc
Q 001801 872 MKSIEVIDFSNNQLS 886 (1011)
Q Consensus 872 L~~L~~L~Ls~N~l~ 886 (1011)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356667777777664
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=54.92 E-value=83 Score=35.65 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=20.4
Q ss_pred cccEEecccCcCcCCCchh--ccCCCCCCEEEccCc
Q 001801 357 SIEVLDLSSQQLEGQIPRS--FGRLCNLREISLSDV 390 (1011)
Q Consensus 357 ~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n 390 (1011)
.+++|...+|.+.|..-.. ...-+..+.+++..-
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs 390 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRS 390 (553)
T ss_pred eeeEeeccccccccccccccceeecccccccccccc
Confidence 6778888888777654332 233355666666543
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=51.46 E-value=11 Score=24.21 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=7.1
Q ss_pred CCCEEeCcCCccc
Q 001801 874 SIEVIDFSNNQLS 886 (1011)
Q Consensus 874 ~L~~L~Ls~N~l~ 886 (1011)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=50.22 E-value=10 Score=23.96 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=10.2
Q ss_pred CCcEEEcCCCccccccCh
Q 001801 698 RLVSLNMDGNQFSGDIPT 715 (1011)
Q Consensus 698 ~L~~L~Ls~N~l~~~ip~ 715 (1011)
+|++|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666665 4443
No 90
>PF15102 TMEM154: TMEM154 protein family
Probab=45.42 E-value=20 Score=33.56 Aligned_cols=28 Identities=18% Similarity=0.116 Sum_probs=15.6
Q ss_pred eeehh-hhhHHHHhhhhheeeeeccccce
Q 001801 964 YVSMA-LGCVVGFWFVIGPLIVNRRWRYM 991 (1011)
Q Consensus 964 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 991 (1011)
++.+. +.+++.+++++++++++||||.+
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccC
Confidence 33443 33444445556666677888774
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=43.38 E-value=17 Score=41.76 Aligned_cols=37 Identities=22% Similarity=0.080 Sum_probs=15.9
Q ss_pred CCCcEEeCCCCCCCCccchHHHhcCCCCCCEEEcCCC
Q 001801 207 SLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGC 243 (1011)
Q Consensus 207 ~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~n 243 (1011)
+.+..+.|++|++-.+..+...-...|+|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3344444444444444333333333444444444444
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.50 E-value=1.3e+02 Score=34.22 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=17.7
Q ss_pred CcccEEeCcCCcccc----cCCccccCCCCCcEEEcCCCcc
Q 001801 673 GSLTLLHLQKNSLSG----RIPESLSNCNRLVSLNMDGNQF 709 (1011)
Q Consensus 673 ~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~Ls~N~l 709 (1011)
+.+..|++++|.... .+|.....-.+++....+.|..
T Consensus 440 qtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 440 QTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 455566666655431 2344444444455555555443
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.35 E-value=35 Score=39.35 Aligned_cols=41 Identities=29% Similarity=0.212 Sum_probs=20.6
Q ss_pred CCCCCEEeCCCCCCCCCcchhcc--CCCCCcEEEccCCCCCCc
Q 001801 306 LTSLRHLDLSYNDFNSSIPNWLA--SFSNLVHISLRSNSLQGS 346 (1011)
Q Consensus 306 l~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~ 346 (1011)
.++|+.|+|++|...-....++. +...|++|-+.+|.+...
T Consensus 243 apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 243 APKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 34555555555521111112233 234567778888877654
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.22 E-value=30 Score=47.81 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=22.8
Q ss_pred eccCccccccccccccCCCCCCEEeCcCCcccc
Q 001801 855 NLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSE 887 (1011)
Q Consensus 855 ~Ls~N~l~g~ip~~l~~L~~L~~L~Ls~N~l~~ 887 (1011)
||++|+|+-..+..|..|++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 577777775555667777777777777776653
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.19 E-value=16 Score=22.99 Aligned_cols=10 Identities=40% Similarity=0.425 Sum_probs=4.1
Q ss_pred CCCEEeCCCC
Q 001801 183 KLQYLDLVEN 192 (1011)
Q Consensus 183 ~L~~L~L~~n 192 (1011)
+|++|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 3444444443
No 96
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=25.04 E-value=29 Score=32.69 Aligned_cols=8 Identities=13% Similarity=0.522 Sum_probs=3.3
Q ss_pred eeehhhhh
Q 001801 964 YVSMALGC 971 (1011)
Q Consensus 964 ~~~~~~~~ 971 (1011)
.+++++|.
T Consensus 51 VIGvVVGV 58 (154)
T PF04478_consen 51 VIGVVVGV 58 (154)
T ss_pred EEEEEecc
Confidence 34444443
No 97
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=24.55 E-value=70 Score=25.14 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHHHHhhhhcccC
Q 001801 1 MNIVVSFVLLELLAVATISLSFCG 24 (1011)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (1011)
||-..+-||++++.+..+|..+.+
T Consensus 1 mnn~Si~VLlaLvLIg~fAVqSda 24 (71)
T PF04202_consen 1 MNNLSIAVLLALVLIGSFAVQSDA 24 (71)
T ss_pred CCchhHHHHHHHHHHhhheeeecC
Confidence 777888899999999887766543
Done!