Query 001801
Match_columns 1011
No_of_seqs 633 out of 5783
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 16:11:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001801.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1098-1102//hhsearch_pdb/001801hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 765.8 49.0 721 30-946 7-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 599.1 40.3 628 117-912 81-743 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 488.7 51.7 599 125-915 18-627 (680)
4 1ziw_A TOLL-like receptor 3; i 1.0 1 1 476.4 47.9 600 137-943 7-627 (680)
5 3j0a_A TOLL-like receptor 5; m 1.0 1 1 447.6 40.0 248 624-944 337-591 (844)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 441.8 42.3 534 125-917 26-567 (606)
7 4eco_A Uncharacterized protein 1.0 1 1 438.0 22.2 112 30-179 25-159 (636)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 435.4 38.2 536 125-922 25-570 (606)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 431.8 41.8 187 120-339 43-231 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 420.0 40.1 294 558-944 264-564 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=765.82 Aligned_cols=721 Identities=30% Similarity=0.462 Sum_probs=398.9
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 89999999999951101879999856887899999986600157359999659997599999998778898620132311
Q 001801 30 GHCIESEREALLKFKKDLKDPSNRLVSWNGAGDGADCCKWSGVVCDNFTGHVLELRLGNPLNHPISYHTSPAQYSIIYRT 109 (1011)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (1011)
+.+.++|++||++||+++.||. .+++|+ .++|||+|+||+|+ .|||++|++++.
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~-------------------- 60 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSK-------------------- 60 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTS--------------------
T ss_pred CCCCHHHHHHHHHHHHHCCCCC-CCCCCC---CCCCCCCCCCEEEC--CCCEEEEECCCC--------------------
T ss_conf 6687899999999996678962-146878---99987688413878--992789877899--------------------
Q ss_pred CCCHHHHHCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCC
Q ss_conf 3510111002357761---155452788898897889989998772246999997863789878888843--24899999
Q 001801 110 YGAEYEAYERSKFGGK---INPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPH--QLGNLSKL 184 (1011)
Q Consensus 110 ~~~~~~~~~~~~~~~~---l~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L 184 (1011)
.+.|. +++++.++++|+.++++.+.+. .+|..++.+++|++|+|++|.+.+.+|. .++++++|
T Consensus 61 -----------~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 61 -----------PLNVGFSAVSSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp -----------CCCEEHHHHHHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred -----------CCCCCCCCCCHHHHCCCCCCCCCCCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf -----------867755766965731680224678688867-87033245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 89958999876779998789999986876999789996436787129999889975799799999999879998659988
Q 001801 185 QYLDLVENSELYVDNLSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDL 264 (1011)
Q Consensus 185 ~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~L 264 (1011)
++|++++|..........+.++++|++|++++|.+++.
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------------------------------ 166 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA------------------------------------------ 166 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE------------------------------------------
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC------------------------------------------
T ss_conf 98989688267747977856388999898979835885------------------------------------------
Q ss_pred CCCCCCCCHHHHHH---HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCC
Q ss_conf 99999997012575---309999769995699886567401348899999968799898874311028999869982388
Q 001801 265 SSNQFDQNSLVLSW---VFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSN 341 (1011)
Q Consensus 265 s~n~~~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 341 (1011)
.+.. +..+++|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. ++.+++|++|++++|
T Consensus 167 ----------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 167 ----------NVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ----------THHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred ----------CCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCC
T ss_conf ----------871556643589889898978803465784--5478689898928827887711-126999998979488
Q ss_pred CCCCCHHHHHHHHHCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCC
Q ss_conf 78874006887423025478635675768876000178998899815866885135777420135467762642658710
Q 001801 342 SLQGSITGFLANLSASIEVLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKI 421 (1011)
Q Consensus 342 ~l~~~~~~~l~~l~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l 421 (1011)
.+++..+..+..++ +|++|++++|.+.+.+|.. .+++|++|++++|. +
T Consensus 234 ~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~-----------------------------l 281 (768)
T 3rgz_A 234 KLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK-----------------------------F 281 (768)
T ss_dssp CCCSCHHHHTTTCS-SCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE-----------------------------E
T ss_pred CCCCCCCHHHHCCC-CCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCC-----------------------------C
T ss_conf 58781657774488-8898989888665716724--36878989791785-----------------------------5
Q ss_pred CCCCCCCCCCC-CCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEECCC
Q ss_conf 22471000599-99989984277588768430069996749990248455533755431799845999128810001199
Q 001801 422 FGHLTSQIGHF-KSLDSLFLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGP 500 (1011)
Q Consensus 422 ~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 500 (1011)
.+.+|..+... ++|+.|++++|.+++.+|..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+....+.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 77258888844686889989689677842367755877667789788525737978872488887884847843762309
Q ss_pred CCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 988744-5445653467679973600259988788965899888986225764067643002336523346898533578
Q 001801 501 DWIPPF-QLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATG 579 (1011)
Q Consensus 501 ~~~~~~-~L~~L~ls~~~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~ 579 (1011)
.+.... +|+.|++++|.+.+..+..+.. . ..++
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~------------------------~----------------------~~~~ 395 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQ------------------------N----------------------PKNT 395 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTC------------------------S----------------------TTCC
T ss_pred HHHHHHCCCCEEECCCCCCCCCCCHHHHH------------------------C----------------------CCCC
T ss_conf 89863227719986278747876766653------------------------3----------------------2477
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf 96898247526766897634776345445557788880000277776527861144223567901220345868762797
Q 001801 580 LRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNN 659 (1011)
Q Consensus 580 L~~L~Ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n 659 (1011)
|+.|++++|.++ +.+|..+.. +++|+.|++++|.+++.+|..+..+++|+.|++++|
T Consensus 396 L~~L~L~~n~l~---------------------~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 396 LQELYLQNNGFT---------------------GKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp CCEEECCSSEEE---------------------EECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCCCC---------------------CCCCHHHHC--CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 618989778465---------------------424877756--898798989588466854677744998898989788
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCC
Q ss_conf 34324995524778565785757825112781221899995998679824213673576506998399711542554588
Q 001801 660 NFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFP 739 (1011)
Q Consensus 660 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p 739 (1011)
.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|++|++++|++.+.+|.+++ .+++|++|++++|.+++.+|
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p 531 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIP 531 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECC
T ss_pred CCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH-CCCCCCEEECCCCCCCCCCC
T ss_conf 15471897882877732999019951375887881699899897539951896876885-68999989897894337488
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCC-----C
Q ss_conf 123699988689822733133445012255557102489999999866775544679----------9999778-----8
Q 001801 740 TELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCL----------PRPRSFS-----D 804 (1011)
Q Consensus 740 ~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-----~ 804 (1011)
..++.+++|+.|++++|+++|.+|..+.....+....+..+.....+........|. ..+.... .
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_conf 77708898998989888468827957860421223201345421111344432222332221001355632320023211
Q ss_pred CCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 65421898417502342121126799744770000274100011237644125763622255212589998799575883
Q 001801 805 PIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQ 884 (1011)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 884 (1011)
......-...|..+.....+..++.|||++|+++|.+|..+++++.|+.|+|++|.++|.||..++++++|+.||||+|+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred CCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 00113310046274334033566579785880155587788414157878486880388789678477789989897880
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf 6534883544899899698336715004999864576576656799-8889999899999999
Q 001801 885 LSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGN-DLCGSPLSRNCTETVP 946 (1011)
Q Consensus 885 l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~g~~~~~~c~~~~~ 946 (1011)
++|.+|..+..+++|+.||+|+|+++|+||..+|+.+|+..+|.|| ++||.|+. .|.....
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCCC
T ss_conf 2386886775788789787968815560899601024897775698321088776-7888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=599.10 Aligned_cols=628 Identities=31% Similarity=0.424 Sum_probs=409.6
Q ss_pred HCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCEEECCC
Q ss_conf 002357761--155452788898897889989998772--24699999786378987888884324-8999998995899
Q 001801 117 YERSKFGGK--INPSLLHFQHLNYLDLSGNSFGGGIPR--FLGSMGKLKYLNLSGAGFKGMIPHQL-GNLSKLQYLDLVE 191 (1011)
Q Consensus 117 ~~~~~~~~~--l~~~l~~l~~L~~L~Ls~~~~~~~~p~--~l~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L~~L~Ls~ 191 (1011)
+....+.+. +++.+.++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred CCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCC
T ss_conf 46786888678703324578899898989857870789678727889998989688267747977856388999898979
Q ss_pred CCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 98767799987--8999998687699978999643678712999988997579979999999987999865998899999
Q 001801 192 NSELYVDNLSW--LPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQF 269 (1011)
Q Consensus 192 n~~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~ 269 (1011)
|.+.......+ +.++++|++|++++|.+.+... +..+++|++|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC----CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCC
T ss_conf 83588587155664358988989897880346578----45478689898928827887711-12699999897948858
Q ss_pred CCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCC-CCCCEEECCCCCCCCCHH
Q ss_conf 9970125753099997699956998865674013488999999687998988743110289-998699823887887400
Q 001801 270 DQNSLVLSWVFGLSNLVYLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASF-SNLVHISLRSNSLQGSIT 348 (1011)
Q Consensus 270 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~ 348 (1011)
++. .+..+..+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..|
T Consensus 236 ~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 236 SGD--FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CSC--HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CCC--CCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 781--6577744888898989888665716724--368789897917855772588888446868899896896778423
Q ss_pred HHHHHHHCCCCEEECCCCCCCCCCCHH-CCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 688742302547863567576887600-0178998899815866885135777420135467762642658710224710
Q 001801 349 GFLANLSASIEVLDLSSQQLEGQIPRS-FGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTS 427 (1011)
Q Consensus 349 ~~l~~l~~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 427 (1011)
..+..++ +|+.|++++|.+.+.+|.. +..+++|++|++++|. +.+.+|.
T Consensus 312 ~~~~~l~-~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~-----------------------------l~~~~p~ 361 (768)
T 3rgz_A 312 PFFGSCS-LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE-----------------------------FSGELPE 361 (768)
T ss_dssp GGGGGCT-TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE-----------------------------EEECCCT
T ss_pred HHHHCCC-CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCC-----------------------------CCCCCCH
T ss_conf 6775587-766778978852573797887248888788484784-----------------------------3762309
Q ss_pred CCCCCC-CCCEEECCCCCCCCCCCCCCCC--CCCCCEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEECCCCCCC
Q ss_conf 005999-9989984277588768430069--9967499902484555337554317998459991288100011999887
Q 001801 428 QIGHFK-SLDSLFLSHNSISGLIPSSLGG--LSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIP 504 (1011)
Q Consensus 428 ~~~~l~-~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 504 (1011)
.+..++ +|+.|++++|++.+.++..+.. +++|++|++++|.+.+.+|. .+..+++|+.|++++|.+...
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~------- 433 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGT------- 433 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESC-------
T ss_pred HHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCC-------
T ss_conf 898632277199862787478767666533247761898977846542487-775689879898958846685-------
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 44544565346767997360025998878896589988898622576406764300233652334689853357896898
Q 001801 505 PFQLEKLDLQSCHLGPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVD 584 (1011)
Q Consensus 505 ~~~L~~L~ls~~~l~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~ 584 (1011)
.|..+..+++|+.|++++|.+.+.+|.. +..+++|+.|+
T Consensus 434 -----------------~p~~l~~l~~L~~L~L~~n~l~~~~p~~------------------------~~~l~~L~~L~ 472 (768)
T 3rgz_A 434 -----------------IPSSLGSLSKLRDLKLWLNMLEGEIPQE------------------------LMYVKTLETLI 472 (768)
T ss_dssp -----------------CCGGGGGCTTCCEEECCSSCCCSCCCGG------------------------GGGCTTCCEEE
T ss_pred -----------------CCHHHHCCCCCCEEECCCCCCCCCCCHH------------------------HCCCCCCEEEE
T ss_conf -----------------4677744998898989788154718978------------------------82877732999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
Q ss_conf 24752676689763477634544555778888000027777652786114422356790122034586876279734324
Q 001801 585 LSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN 664 (1011)
Q Consensus 585 Ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 664 (1011)
+++|.+++.+| ..+.. +++|+.|++++|++.+.+|..++.+++|++|++++|++++.
T Consensus 473 L~~N~l~~~~p---------------------~~l~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 473 LDFNDLTGEIP---------------------SGLSN--CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CCSSCCCSCCC---------------------GGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred ECCCCCCCCCC---------------------HHHHC--CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 01995137588---------------------78816--99899897539951896876885689999898978943374
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCC----------------------CCCCCCCHHHHHCCC
Q ss_conf 9955247785657857578251127812218999959986798----------------------242136735765069
Q 001801 665 LPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLNMDGN----------------------QFSGDIPTWIGEKFS 722 (1011)
Q Consensus 665 ~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N----------------------~l~~~ip~~~~~~l~ 722 (1011)
+|..++.+++|+.|++++|++++.+|..+.....+..+++..+ .+.+..+..+. .+.
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 608 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLS 608 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGG
T ss_pred CCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-CCC
T ss_conf 8877708898998989888468827957860421223201345421111344432222332221001355632320-023
Q ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98399711542554588123699988689822733133445012255557102489999999866775544679999977
Q 001801 723 SMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSF 802 (1011)
Q Consensus 723 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1011)
.+..+++..|.+.|.+|..+..+++|+.|++++|+++|.+|..+++++.|
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L------------------------------ 658 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL------------------------------ 658 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC------------------------------
T ss_pred CCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCC------------------------------
T ss_conf 21100113310046274334033566579785880155587788414157------------------------------
Q ss_pred CCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 88654218984175023421211267997447700002741000112376441257636222552125899987995758
Q 001801 803 SDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSN 882 (1011)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~ 882 (1011)
+.|||++|+++|.+|..+++++.|+.|||++|+++|.+|..++.++.|+.||+|+
T Consensus 659 -------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 659 -------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp -------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred -------------------------CEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf -------------------------8784868803887896784777899898978802386886775788789787968
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCC-CCCC
Q ss_conf 83653488354489989969833671-5004
Q 001801 883 NQLSEEIPRSVSNLTFLNLLNLSYNY-LSGE 912 (1011)
Q Consensus 883 N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g~ 912 (1011)
|+++|.||.. ..+..+....+.+|+ ++|.
T Consensus 714 N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 714 NNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp SEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCCCCCCCC-HHHCCCCHHHHCCCCHHCCC
T ss_conf 8155608996-01024897775698321088
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=488.72 Aligned_cols=599 Identities=22% Similarity=0.226 Sum_probs=355.0
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11554527888988978899899987722469999978637898788888432489999989958999876779998789
Q 001801 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLP 204 (1011)
Q Consensus 125 ~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 204 (1011)
.+|..+. +++++|++++|.+.+..+..++++++|++|++++|.+.+..|..++++++|++|++++|.+...+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~------ 89 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS------ 89 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC------
T ss_pred CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC------
T ss_conf 2641248--88768889899778759788717876758878899648569778740667688889998567568------
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 99998687699978999643678712999988997579979999999987999865998899999997012575309999
Q 001801 205 GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN 284 (1011)
Q Consensus 205 ~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 284 (1011)
+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+. .+..+..+++
T Consensus 90 ---------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~ 146 (680)
T 1ziw_A 90 ---------------------DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST--KLGTQVQLEN 146 (680)
T ss_dssp ---------------------TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTT
T ss_pred ---------------------HHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCC--CCHHHCCCCC
T ss_conf ---------------------54530388889898989966853966741567888898989952466--7211124556
Q ss_pred CCEEECCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCHHHHHHHH--HCCCCE
Q ss_conf 76999569988656740134--88999999687998988743110289998699823887887400688742--302547
Q 001801 285 LVYLDLGSNDFQGSIPVGLQ--NLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANL--SASIEV 360 (1011)
Q Consensus 285 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~~L~~ 360 (1011)
|++|++++|.+++..+..+. .+++|+.|++++|.+++..+..+..+++|+.+++.++.+.......+... ..+|+.
T Consensus 147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred CCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 77797458843652978862446663217988898256558155532234455430566468056777877753151008
Q ss_pred EECCCCCCCCCCCHHCCCCCC--CCEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 863567576887600017899--889981586688513577742013546776264265871022471000599999899
Q 001801 361 LDLSSQQLEGQIPRSFGRLCN--LREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSL 438 (1011)
Q Consensus 361 L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L 438 (1011)
|++++|.+.+..+..+..++. |+.|++++|. +.+..+..++.+++|+.|
T Consensus 227 L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-----------------------------l~~~~~~~~~~l~~L~~L 277 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-----------------------------LNVVGNDSFAWLPQLEYF 277 (680)
T ss_dssp EECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-----------------------------CCEECTTTTTTCTTCCEE
T ss_pred EECCCCCCCCCCHHHHHCCCCCCCCEEECCCCC-----------------------------CCCCCCCCCCCCCCCCEE
T ss_conf 874577436468667514676778887787887-----------------------------675680211674105685
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCC
Q ss_conf 84277588768430069996749990248455533755431799845999128810001199988744544565346767
Q 001801 439 FLSHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHL 518 (1011)
Q Consensus 439 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~~~l 518 (1011)
++++|++.+..+..+..+++|++|++++|...+.++. .. +.......+
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~-------------lp~i~~~~~---------------- 325 (680)
T 1ziw_A 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL---AS-------------LPKIDDFSF---------------- 325 (680)
T ss_dssp ECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----------------------CCEECTTTT----------------
T ss_pred ECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCC---CC-------------CCCCCHHHC----------------
T ss_conf 5778856765865626788855773633132133333---55-------------454386562----------------
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 9973600259988788965899888986225764067643002336523346898-533578968982475267668976
Q 001801 519 GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPN-LSKATGLRTVDLSSNNLSGTLPLI 597 (1011)
Q Consensus 519 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~ 597 (1011)
..++ +|+.|++++|.+.+..+. +..+++|+++++++|.+....
T Consensus 326 --------~~l~-------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~--- 369 (680)
T 1ziw_A 326 --------QWLK-------------------------CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT--- 369 (680)
T ss_dssp --------TTCT-------------------------TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE---
T ss_pred --------CCCC-------------------------CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHH---
T ss_conf --------4677-------------------------7888879898268788557406568728988798014432---
Q ss_pred CCCCCEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 347763454455577888800002777765278611442235679012203458687627973432499-5524778565
Q 001801 598 SFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLP-PSLGSLGSLT 676 (1011)
Q Consensus 598 ~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~ 676 (1011)
+... .+.....++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+| ..+.++++|+
T Consensus 370 --------l~~~--------~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~ 433 (680)
T 1ziw_A 370 --------LTNE--------TFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF 433 (680)
T ss_dssp --------ECTT--------TTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred --------CCHH--------HHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf --------3532--------202455686766889999777677544207788888867787575435755325754612
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC--CCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 7857578251127812218999959986798242--13673576506998399711542554588123699988689822
Q 001801 677 LLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFS--GDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLG 754 (1011)
Q Consensus 677 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 754 (1011)
.|++++|++.+..+..+..+++|+.|++++|.+. +.+|..+. .+++|+.|++++|.+++..+..+.++++|+.|+++
T Consensus 434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 78448997542276455007543101101464422566776455-57878999899998776794463455346888588
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 73313344501225555710248999999986677554467999997788654218984175023421211267997447
Q 001801 755 YNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSK 834 (1011)
Q Consensus 755 ~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~ 834 (1011)
+|++++..+..+..-.. .....+..++.|+|++
T Consensus 513 ~N~l~~~~~~~~~~~~~-----------------------------------------------~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 513 HNNLARLWKHANPGGPI-----------------------------------------------YFLKGLSHLHILNLES 545 (680)
T ss_dssp SSCCGGGGSTTSTTSCC-----------------------------------------------CTTTTCTTCCEEECCS
T ss_pred CCCCCCCCHHHCCCCCC-----------------------------------------------HHHCCCCCCCEEECCC
T ss_conf 99730000000467741-----------------------------------------------4233799888888999
Q ss_pred CCCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCC
Q ss_conf 700002741000112376441257636222552125899987995758836534883544-8998996983367150049
Q 001801 835 NNFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVS-NLTFLNLLNLSYNYLSGEI 913 (1011)
Q Consensus 835 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~i 913 (1011)
|+++...+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.|.+
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 97887797773466675223899997776797683789888889899996870596683011466577983189702577
Q ss_pred CC
Q ss_conf 99
Q 001801 914 PT 915 (1011)
Q Consensus 914 p~ 915 (1011)
+.
T Consensus 626 ~~ 627 (680)
T 1ziw_A 626 ES 627 (680)
T ss_dssp CC
T ss_pred CC
T ss_conf 66
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=476.42 Aligned_cols=600 Identities=22% Similarity=0.246 Sum_probs=328.3
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 88978899899987722469999978637898788888432489999989958999876779998789999986876999
Q 001801 137 NYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLPGLSLLQHLDLGG 216 (1011)
Q Consensus 137 ~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~~l~~L~~L~L~~ 216 (1011)
+.++.+++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+...
T Consensus 7 ~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------- 64 (680)
T 1ziw_A 7 EVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL------------------- 64 (680)
T ss_dssp SEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC-------------------
T ss_pred CEEECCCCCCC-CCCCCCC--CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCC-------------------
T ss_conf 74487779805-2641248--8876888989977875978871787675887889964856-------------------
Q ss_pred CCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf 78999643678712999988997579979999999987999865998899999997012575309999769995699886
Q 001801 217 VNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSNLVYLDLGSNDFQ 296 (1011)
Q Consensus 217 ~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L~~n~l~ 296 (1011)
.+..+.++++|++|++++|.++...+..|.+ +++|++|++++|.++
T Consensus 65 --------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~--------------------------l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 65 --------EPELCQKLPMLKVLNLQHNELSQLSDKTFAF--------------------------CTNLTELHLMSNSIQ 110 (680)
T ss_dssp --------CTTHHHHCTTCCEEECCSSCCCCCCTTTTTT--------------------------CTTCSEEECCSSCCC
T ss_pred --------CHHHHHCCCCCCEEECCCCCCCCCCHHHHCC--------------------------CCCCCEEECCCCCCC
T ss_conf --------9778740667688889998567568545303--------------------------888898989899668
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCHHHHHHH--HHCCCCEEECCCCCCCCCCCH
Q ss_conf 567401348899999968799898874311028999869982388788740068874--230254786356757688760
Q 001801 297 GSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLAN--LSASIEVLDLSSQQLEGQIPR 374 (1011)
Q Consensus 297 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~~L~~L~Ls~n~l~~~~~~ 374 (1011)
+..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.. .. +|+.|++++|.+.+..+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS-SLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-EESEEECTTCCCCCBCTT
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCC-CCCEEECCCCCCCCCCHH
T ss_conf 5396674156788889898995246672111245567779745884365297886244666-321798889825655815
Q ss_pred HCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 00178998899815866885135777420135467762642658710224710005999998998427758876843006
Q 001801 375 SFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSHNSISGLIPSSLG 454 (1011)
Q Consensus 375 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 454 (1011)
.+..+++|+.+.+.++.+........ +..+ ..++|+.|++++|.+.+..+..+.
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~-------------------------~~~l-~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKL-------------------------CLEL-ANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHH-------------------------HHHH-TTSCCCEEECTTSCCCEECTTTTG
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHH-------------------------HHHH-HHCCCCEEECCCCCCCCCCHHHHH
T ss_conf 55322344554305664680567778-------------------------7775-315100887457743646866751
Q ss_pred CCCC--CCEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 9996--74999024845553375543179984599912881000119998874454456534676799736002599887
Q 001801 455 GLSS--LERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTFPFWLLSQNVL 532 (1011)
Q Consensus 455 ~l~~--L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~~~l~~~~~~~l~~~~~L 532 (1011)
.++. |++|++++|.+.+..+. .+..+++|+.|++++|.+.......+..+.+|+.+++++|
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~---------------- 306 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------------- 306 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC----------------
T ss_pred CCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCH----------------
T ss_conf 46767788877878876756802-1167410568557788567658656267888557736331----------------
Q ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 88965899888986225764067643002336523346898533578968982475267668976347763454455577
Q 001801 533 GYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFS 612 (1011)
Q Consensus 533 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~ls~n~l~ 612 (1011)
...+.++. ...+.+.. ..+..+++|+.|++++|.+.+..
T Consensus 307 --------~~~~~~~~---~~lp~i~~------------~~~~~l~~L~~L~l~~n~l~~~~------------------ 345 (680)
T 1ziw_A 307 --------FTKQSISL---ASLPKIDD------------FSFQWLKCLEHLNMEDNDIPGIK------------------ 345 (680)
T ss_dssp --------BCCC---------CCEECT------------TTTTTCTTCCEEECCSCCBCCCC------------------
T ss_pred --------HHHCCCCC---CCCCCCCH------------HHCCCCCCCCEEECCCCCCCCCC------------------
T ss_conf --------32133333---55454386------------56246777888879898268788------------------
Q ss_pred CCCCHHHCCCCCCCCCEEEECCCCCCC--CCCHHHHCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 888800002777765278611442235--679012203--4586876279734324995524778565785757825112
Q 001801 613 GSISPVLCNGMRGELQVLNLENNSFSG--EIPDCWMNF--LYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGR 688 (1011)
Q Consensus 613 ~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~p~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 688 (1011)
+..+.. +++|+.|++++|.+.. ..+..|..+ ++|+.|++++|++++..|..+..+++|+.|++++|.+.+.
T Consensus 346 ---~~~~~~--l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 346 ---SNMFTG--LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp ---TTTTTT--CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred ---HHHHCC--CCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCC
T ss_conf ---557406--568728988798014432353220245568676688999977767754420778888886778757543
Q ss_pred CC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEECCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 78-122189999599867982421367357650699839971154255--458812369998868982273313344501
Q 001801 689 IP-ESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFD--GQFPTELCFLTSLQILDLGYNNLSGAIPKC 765 (1011)
Q Consensus 689 ~p-~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~ 765 (1011)
+| ..+.++++|++|++++|++.+..+..+. .+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCCEECHHHHH-CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHH
T ss_conf 5755325754612784489975422764550-075431011014644225667764555787899989999877679446
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCC---
Q ss_conf 22555571024899999998667755446799999778865421898417502342121126799744770000274---
Q 001801 766 ISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIP--- 842 (1011)
Q Consensus 766 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip--- 842 (1011)
+.++++| +.|++++|++++..+
T Consensus 500 ~~~l~~L-------------------------------------------------------~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 500 LEGLEKL-------------------------------------------------------EILDLQHNNLARLWKHAN 524 (680)
T ss_dssp TTTCTTC-------------------------------------------------------CEEECCSSCCGGGGSTTS
T ss_pred HCCCCCC-------------------------------------------------------CEEECCCCCCCCCCHHHC
T ss_conf 3455346-------------------------------------------------------888588997300000004
Q ss_pred -----HHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf -----100011237644125763622255212589998799575883653488354489989969833671500499986
Q 001801 843 -----VEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTST 917 (1011)
Q Consensus 843 -----~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~ 917 (1011)
..+.++++|+.|+|++|.++...+..|+++++|+.|++++|++++..+..|..+++|+.|++++|++++..|...
T Consensus 525 ~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp TTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 67741423379988888899997887797773466675223899997776797683789888889899996870596683
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --45765766567998889999899999
Q 001801 918 --QLQSFDASCFIGNDLCGSPLSRNCTE 943 (1011)
Q Consensus 918 --~~~~~~~~~~~~n~l~g~~~~~~c~~ 943 (1011)
.+..+... .+.|+|+.|.|..
T Consensus 605 ~~~~~~L~~l-----~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 605 GPAFRNLTEL-----DMRFNPFDCTCES 627 (680)
T ss_dssp HHHHTTCSEE-----ECTTCCCCBCCCC
T ss_pred CCCCCCCCEE-----ECCCCCCCCCCCC
T ss_conf 0114665779-----8318970257766
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=447.60 Aligned_cols=248 Identities=22% Similarity=0.234 Sum_probs=167.5
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 77652786114422356790122034586876279734324995524778565785757825112781221899995998
Q 001801 624 RGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGRIPESLSNCNRLVSLN 703 (1011)
Q Consensus 624 ~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 703 (1011)
+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|+
T Consensus 337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ 407 (844)
T 3j0a_A 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIH 407 (844)
T ss_dssp CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CC----CCCCCCHHCCCCCCCC-CCCCC---CCCCCEEE
T ss_conf 9999989898998776286661378889998898997786-16----8898232005899723-14554---55431221
Q ss_pred CCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCC-CCCCCCCCCEEECCCCCCCCCCC-----CCCCCCCCCCCCCC
Q ss_conf 6798242136735765069983997115425545881-23699988689822733133445-----01225555710248
Q 001801 704 MDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPT-ELCFLTSLQILDLGYNNLSGAIP-----KCISNLSAMVTVDY 777 (1011)
Q Consensus 704 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~~p-----~~~~~l~~L~~~~~ 777 (1011)
+++|++.+.-.......+++|+.|++++|.+++..+. .+..+++|+.|++++|.+.+..+ ..+.++
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l-------- 479 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL-------- 479 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB--------
T ss_pred CCCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC--------
T ss_conf 456753457556665127766666677871255554333566873100247777364410135535554475--------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEECCCHHCCCCCCCCEEECC
Q ss_conf 99999998667755446799999778865421898417502342121126799744770000274100011237644125
Q 001801 778 PLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSGEIPVEVTDLVALRSLNLS 857 (1011)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 857 (1011)
+.|+.|||++|++++.+|..+.++++|+.|+|+
T Consensus 480 -----------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 480 -----------------------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp -----------------------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred -----------------------------------------------CCCCEEECCCCCCCCCCHHHCCCHHHHHEEECC
T ss_conf -----------------------------------------------536577788985655395570450122156999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 7636222552125899987995758836534883544899899698336715004999864576576656799-888999
Q 001801 858 YNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTSTQLQSFDASCFIGN-DLCGSP 936 (1011)
Q Consensus 858 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~g~~ 936 (1011)
+|++++..|..+. ++|+.||+++|++++.+|..+. .|+.+++++|++.|.++..+...++ ..++ .++|.+
T Consensus 513 ~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~~~----~~~~~~~~~~~ 583 (844)
T 3j0a_A 513 SNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWL----NHTNVTIAGPP 583 (844)
T ss_dssp SCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHHHH----HHTTTTTCCCG
T ss_pred CCCCCCCCHHHHH--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCHHHHHHH----HHCCCCCCCCC
T ss_conf 9978745710110--0455888988847888966837---7688993199702536618999999----73685302660
Q ss_pred CCCCCCCC
Q ss_conf 98999999
Q 001801 937 LSRNCTET 944 (1011)
Q Consensus 937 ~~~~c~~~ 944 (1011)
....|..+
T Consensus 584 ~~~~C~~p 591 (844)
T 3j0a_A 584 ADIYCVYP 591 (844)
T ss_dssp GGCCCSSC
T ss_pred CCCCCCCC
T ss_conf 02755780
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=441.77 Aligned_cols=534 Identities=19% Similarity=0.215 Sum_probs=303.4
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11554527888988978899899987722469999978637898788888432489999989958999876779998789
Q 001801 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLP 204 (1011)
Q Consensus 125 ~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 204 (1011)
.+|..+. +++++|++++|.+++..|..++++++|++|++++|.+.+..|..|.++++|++|++++|.+....
T Consensus 26 ~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------ 97 (606)
T 3t6q_A 26 EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA------ 97 (606)
T ss_dssp SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEEC------
T ss_pred CCCCCCC--CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCC------
T ss_conf 2867789--86758981587347179667256766528978898355248511368433676448898565458------
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 99998687699978999643678712999988997579979999999987999865998899999997012575309999
Q 001801 205 GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN 284 (1011)
Q Consensus 205 ~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 284 (1011)
+..+.++++|++|++++|.++...+..+..+++|++|++++|.+.+. ....+..+++
T Consensus 98 ---------------------~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~ 154 (606)
T 3t6q_A 98 ---------------------ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI--KLPKGFPTEK 154 (606)
T ss_dssp ---------------------TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC--CCCTTCCCTT
T ss_pred ---------------------HHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCC--CCCCCCCCCC
T ss_conf ---------------------65523442153765212676657810122378223898879834114--7654568765
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCC--EEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 76999569988656740134889999--9968799898874311028999869982388788740068874230254786
Q 001801 285 LVYLDLGSNDFQGSIPVGLQNLTSLR--HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQGSITGFLANLSASIEVLD 362 (1011)
Q Consensus 285 L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~L~~L~ 362 (1011)
|++|++++|.+++..+..++.+++|+ .|++++|.+.+..+..+. ...|+.+++++|. ..+..+..+. .+....
T Consensus 155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~-~~~l~~ 229 (606)
T 3t6q_A 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLK-NSTIQS 229 (606)
T ss_dssp CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTT-TCEEEE
T ss_pred CCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCH---HHHHHHHHCC-CCCHHH
T ss_conf 6877765684455496563322156403896679814754866730-0100135567726---6777765133-564422
Q ss_pred CCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 35675768876000178998899815866885135777420135467762642658710224710005999998998427
Q 001801 363 LSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLFLSH 442 (1011)
Q Consensus 363 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~L~~ 442 (1011)
+....+. .+.... +.......+.. .+++.+++++
T Consensus 230 l~~~~~~-----------~~~~~~----------------------------------i~~~~~~~l~~-~~L~~L~l~~ 263 (606)
T 3t6q_A 230 LWLGTFE-----------DMDDED----------------------------------ISPAVFEGLCE-MSVESINLQK 263 (606)
T ss_dssp EECCCCT-----------TSCCCC----------------------------------CCGGGGGGGGG-SEEEEEECTT
T ss_pred EECHHHC-----------CCCCCC----------------------------------CCHHHHCHHHC-CCEEEEEEEC
T ss_conf 0020110-----------264122----------------------------------68667430320-7505999445
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 75887684300699967499902484555337554317998459991288100011999887445445653467679973
Q 001801 443 NSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHLGPTF 522 (1011)
Q Consensus 443 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~~~l~~~~ 522 (1011)
|.+++..+..|..+++|++|++++|.+.. +|. .+..+++|+.|++
T Consensus 264 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-lp~-~l~~l~~L~~L~l--------------------------------- 308 (606)
T 3t6q_A 264 HYFFNISSNTFHCFSGLQELDLTATHLSE-LPS-GLVGLSTLKKLVL--------------------------------- 308 (606)
T ss_dssp CCCSSCCTTTTTTCTTCSEEECTTSCCSC-CCS-SCCSCTTCCEEEC---------------------------------
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCC-CCH-HHCCCCCCCEEEC---------------------------------
T ss_conf 76585577774456678889562882677-782-1416546888977---------------------------------
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 60025998878896589988898622576406764300233652334689853357896898247526766897634776
Q 001801 523 PFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLE 602 (1011)
Q Consensus 523 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~ 602 (1011)
++|.+.+..+.. +..
T Consensus 309 ---------------~~n~l~~~~~~~------------------------~~~-------------------------- 323 (606)
T 3t6q_A 309 ---------------SANKFENLCQIS------------------------ASN-------------------------- 323 (606)
T ss_dssp ---------------TTCCCSBGGGGC------------------------GGG--------------------------
T ss_pred ---------------CCCCCCCCCHHH------------------------HHC--------------------------
T ss_conf ---------------168768676023------------------------301--------------------------
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCC-HHHHCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEE
Q ss_conf 3454455577888800002777765278611442235679-01220345868762797343249--95524778565785
Q 001801 603 SIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIP-DCWMNFLYLRVLNLGNNNFTGNL--PPSLGSLGSLTLLH 679 (1011)
Q Consensus 603 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~L~~L~ 679 (1011)
+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+.. +..+..+++|+.|+
T Consensus 324 ---------------------l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 324 ---------------------FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382 (606)
T ss_dssp ---------------------CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred ---------------------CCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEE
T ss_conf ---------------------57689888989974443462455066758988788996664567522105678889898
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 75782511278122189999599867982421367357650699839971154255458812369998868982273313
Q 001801 680 LQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYNNLS 759 (1011)
Q Consensus 680 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 759 (1011)
+++|++.+..|..+..+++|+.|++++|++.+..|......+++|+.|++++|.+.+..|..+..+++|+.|++++|++.
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCC
T ss_conf 98996775788873477457768788886777565212417655888989898557768778737887888989899888
Q ss_pred CCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCC
Q ss_conf 344---50122555571024899999998667755446799999778865421898417502342121126799744770
Q 001801 760 GAI---PKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNN 836 (1011)
Q Consensus 760 g~~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~ 836 (1011)
+.. +..+..+++| +.|++++|+
T Consensus 463 ~~~~~~~~~~~~l~~L-------------------------------------------------------~~L~Ls~n~ 487 (606)
T 3t6q_A 463 KGNIQKTNSLQTLGRL-------------------------------------------------------EILVLSFCD 487 (606)
T ss_dssp GGEECSSCGGGGCTTC-------------------------------------------------------CEEECTTSC
T ss_pred CCCCCCCHHHCCCCCC-------------------------------------------------------CEEECCCCC
T ss_conf 5434543124048876-------------------------------------------------------688799996
Q ss_pred CEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 00027410001123764412576362225521258999879957588365348835448998996983367150049998
Q 001801 837 FSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS 916 (1011)
Q Consensus 837 l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 916 (1011)
+++.+|..++.+++|+.|++++|.+++.+|..++.++.| .|++++|++++.+|..+..+++|+.+++++|++.|.++..
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCH
T ss_conf 670686463265678889898980686896684756651-8987689414268766256778788967799861667757
Q ss_pred C
Q ss_conf 6
Q 001801 917 T 917 (1011)
Q Consensus 917 ~ 917 (1011)
+
T Consensus 567 ~ 567 (606)
T 3t6q_A 567 Y 567 (606)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=437.96 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=81.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCCC--------CCCCCCCCCCCCCCCCCC---EEEEECCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 8999999999995110187999--------985688789999998660---01573599996599975999999987788
Q 001801 30 GHCIESEREALLKFKKDLKDPS--------NRLVSWNGAGDGADCCKW---SGVVCDNFTGHVLELRLGNPLNHPISYHT 98 (1011)
Q Consensus 30 ~~~~~~~~~~ll~~~~~~~~~~--------~~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~~~ 98 (1011)
......|+.||.++++++..+. ...++|. .+++||.| .||+|+. .|||++|+|++.
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~--------- 91 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGF--------- 91 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTS---------
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEECC-CCCEEEEEECCC---------
T ss_conf 5667788999999999758997454776776578877---799800014779848767-897889984276---------
Q ss_pred CCCCHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCC------C------CCCCCCCCCCCCCEEECC
Q ss_conf 9862013231135101110023577611554527888988978899899------9------877224699999786378
Q 001801 99 SPAQYSIIYRTYGAEYEAYERSKFGGKINPSLLHFQHLNYLDLSGNSFG------G------GIPRFLGSMGKLKYLNLS 166 (1011)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~~~~~------~------~~p~~l~~l~~L~~L~Ls 166 (1011)
.+.|.+|++++++++|++|+|++|.+. + .+|... +.+|+ ++++
T Consensus 92 ----------------------~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~ 146 (636)
T 4eco_A 92 ----------------------GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQ 146 (636)
T ss_dssp ----------------------CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHH
T ss_pred ----------------------CCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHH--HHHHH-HHHH
T ss_conf ----------------------6577288578568451189876885123774334532356733888--88887-6577
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 9878888843248
Q 001801 167 GAGFKGMIPHQLG 179 (1011)
Q Consensus 167 ~n~~~~~~p~~l~ 179 (1011)
.+.+.+.+|..+.
T Consensus 147 ~~~l~~~~~~~~~ 159 (636)
T 4eco_A 147 KTFVDYDPREDFS 159 (636)
T ss_dssp HHHTCCCGGGGSC
T ss_pred HHHHCCCCHHHHH
T ss_conf 7554117066677
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=435.35 Aligned_cols=536 Identities=20% Similarity=0.176 Sum_probs=296.5
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 11554527888988978899899987722469999978637898788888432489999989958999876779998789
Q 001801 125 KINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDNLSWLP 204 (1011)
Q Consensus 125 ~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~~~~l~ 204 (1011)
.+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+..|..|.++++|++|++++|.+....
T Consensus 25 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~------ 96 (606)
T 3vq2_A 25 KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS------ 96 (606)
T ss_dssp SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCC------
T ss_pred CCCCCCC--CCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCCCCCCCC------
T ss_conf 1898888--87678878889757737545557766748868877366439777306010688678798563048------
Q ss_pred CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCC
Q ss_conf 99998687699978999643678712999988997579979999999987999865998899999997012575309999
Q 001801 205 GLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWVFGLSN 284 (1011)
Q Consensus 205 ~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~ 284 (1011)
+..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+.. +|..+..+++
T Consensus 97 ---------------------p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-lp~~~~~l~~ 154 (606)
T 3vq2_A 97 ---------------------PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK-LPAYFSNLTN 154 (606)
T ss_dssp ---------------------TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC-CCGGGGTCTT
T ss_pred ---------------------HHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEE-CHHHHHHCCC
T ss_conf ---------------------522078653788870377555445113489887798968788523253-0686732677
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCC----EEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCC-CHHHHHHHHHCCCC
Q ss_conf 76999569988656740134889999----99687998988743110289998699823887887-40068874230254
Q 001801 285 LVYLDLGSNDFQGSIPVGLQNLTSLR----HLDLSYNDFNSSIPNWLASFSNLVHISLRSNSLQG-SITGFLANLSASIE 359 (1011)
Q Consensus 285 L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~L~ 359 (1011)
|++|++++|.+++..+..++.+++|+ ++++++|.+++..+..+.. .+|+.|++++|.+.+ ..+..+.++. .++
T Consensus 155 L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~ 232 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLA-GLH 232 (606)
T ss_dssp CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTT-TCE
T ss_pred CCEEECCCCCCEECCHHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCC-CEEEEEECCCCCCCHHHHHHHHCCCC-CCC
T ss_conf 7788766885310573341212034200243004689753257110567-60433524678561667788860266-565
Q ss_pred EEECCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 78635675768876000178998899815866885135777420135467762642658710224710005999998998
Q 001801 360 VLDLSSQQLEGQIPRSFGRLCNLREISLSDVKMSQDISEILDIFSSCISDRLESWDMTGCKIFGHLTSQIGHFKSLDSLF 439 (1011)
Q Consensus 360 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~l~~L~~L~ 439 (1011)
.+++..+.+.+. ..+.. +....+..+..+ .++.++
T Consensus 233 ~l~l~~~~~~~~--------~~l~~------------------------------------~~~~~~~~l~~l-~l~~l~ 267 (606)
T 3vq2_A 233 VHRLILGEFKDE--------RNLEI------------------------------------FEPSIMEGLCDV-TIDEFR 267 (606)
T ss_dssp EEEEEEECCTTS--------CCCSC------------------------------------CCGGGGTTGGGS-EEEEEE
T ss_pred CCCCCCCCCCCC--------CCCCC------------------------------------CCHHHHHHHHHC-CHHHEE
T ss_conf 231411110367--------74102------------------------------------681776666543-474501
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCCCEEECCCCCC
Q ss_conf 4-277588768430069996749990248455533755431799845999128810001199988744544565346767
Q 001801 440 L-SHNSISGLIPSSLGGLSSLERVVLSNNTLKGYLSEIHLANLSKLVSFDVSGNALTLKVGPDWIPPFQLEKLDLQSCHL 518 (1011)
Q Consensus 440 L-~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~~~l 518 (1011)
+ ..+.+.+..+. +..+++|+.|++++|.+..
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~----------------------------------------------- 299 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY----------------------------------------------- 299 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-----------------------------------------------
T ss_pred CCCCCCCCCCCCC-CCCCCCCCEEEECCCCCHH-----------------------------------------------
T ss_conf 2366555543222-3548878987714766044-----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 99736002599887889658998889862257640676430023365233468985335789689824752676689763
Q 001801 519 GPTFPFWLLSQNVLGYLDISRSGIQDTVPARFWEASPQLYFLNFSNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLIS 598 (1011)
Q Consensus 519 ~~~~~~~l~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 598 (1011)
++.+..+++|+.|++++|.+ +
T Consensus 300 ----------------------------------------------------l~~l~~~~~L~~L~l~~n~l-~------ 320 (606)
T 3vq2_A 300 ----------------------------------------------------LEDVPKHFKWQSLSIIRCQL-K------ 320 (606)
T ss_dssp ----------------------------------------------------CCCCCTTCCCSEEEEESCCC-S------
T ss_pred ----------------------------------------------------HHHCCCCCCCCEEECCCCCC-C------
T ss_conf ----------------------------------------------------35433401177897646667-6------
Q ss_pred CCCCEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC--CCCCCCCCCCCC
Q ss_conf 477634544555778888000027777652786114422356790122034586876279734324--995524778565
Q 001801 599 FQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNSFSGEIPDCWMNFLYLRVLNLGNNNFTGN--LPPSLGSLGSLT 676 (1011)
Q Consensus 599 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~ 676 (1011)
.+|.. .+++|+.|++++|...+.. .+..+++|+.|++++|.+++. .|..+..+++|+
T Consensus 321 ---------------~lp~~----~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 321 ---------------QFPTL----DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp ---------------SCCCC----CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred ---------------CCCCC----CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCC
T ss_conf ---------------54667----8875564454478685310--00248988879775873687752012214677554
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 78575782511278122189999599867982421367357650699839971154255458812369998868982273
Q 001801 677 LLHLQKNSLSGRIPESLSNCNRLVSLNMDGNQFSGDIPTWIGEKFSSMVILNLRSNIFDGQFPTELCFLTSLQILDLGYN 756 (1011)
Q Consensus 677 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 756 (1011)
.|++++|.+.+ +|..+..+++|+.|++++|++.+..|...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 380 ~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 380 HLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp EEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC
T ss_conf 86788995300-05540688888965898870587537645646213788989689787433555347787898989898
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCC
Q ss_conf 3133-445012255557102489999999866775544679999977886542189841750234212112679974477
Q 001801 757 NLSG-AIPKCISNLSAMVTVDYPLGDTHPGITDCSLYRSCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKN 835 (1011)
Q Consensus 757 ~l~g-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N 835 (1011)
++.+ .+|..++.+++| +.|++++|
T Consensus 459 ~l~~~~~~~~~~~l~~L-------------------------------------------------------~~L~Ls~n 483 (606)
T 3vq2_A 459 SFKDNTLSNVFANTTNL-------------------------------------------------------TFLDLSKC 483 (606)
T ss_dssp EEGGGEECSCCTTCTTC-------------------------------------------------------CEEECTTS
T ss_pred CCCCCCHHHHHCCCCCC-------------------------------------------------------CEEECCCC
T ss_conf 37985467760457889-------------------------------------------------------98989888
Q ss_pred CCEECCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCCCC
Q ss_conf 00002741000112376441257636222552125899987995758836534883544899-89969833671500499
Q 001801 836 NFSGEIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAMKSIEVIDFSNNQLSEEIPRSVSNLT-FLNLLNLSYNYLSGEIP 914 (1011)
Q Consensus 836 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~L~ls~N~l~g~ip 914 (1011)
++++.+|..++++++|+.|++++|.+++.+|..++.+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.|.++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCC
T ss_conf 577648656154646898989899578748777068876898889898376-6687675210217488762898664776
Q ss_pred CCCCCCCC
Q ss_conf 98645765
Q 001801 915 TSTQLQSF 922 (1011)
Q Consensus 915 ~~~~~~~~ 922 (1011)
..+...++
T Consensus 563 ~~~~~~~l 570 (606)
T 3vq2_A 563 HQKFLQWV 570 (606)
T ss_dssp THHHHTTT
T ss_pred CHHHHHHH
T ss_conf 48999998
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=431.83 Aligned_cols=187 Identities=18% Similarity=0.180 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 35776115545278889889788998999877224699999786378987888884324899999899589998767799
Q 001801 120 SKFGGKINPSLLHFQHLNYLDLSGNSFGGGIPRFLGSMGKLKYLNLSGAGFKGMIPHQLGNLSKLQYLDLVENSELYVDN 199 (1011)
Q Consensus 120 ~~~~~~l~~~l~~l~~L~~L~Ls~~~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~Ls~n~~~~~~~ 199 (1011)
+.+.+..+.++.++++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..|..++++++|++|++++|.+...+
T Consensus 43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~- 121 (606)
T 3t6q_A 43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID- 121 (606)
T ss_dssp CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG-
T ss_pred CCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCC-
T ss_conf 7347179667256766528978898355248511368433676448898565458655234421537652126766578-
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHH
Q ss_conf 98789999986876999789996436787129999889975799799999999879998659988999999970125753
Q 001801 200 LSWLPGLSLLQHLDLGGVNLGKAFDWSLAINSLSSLRVLRLSGCQLDHFHPPPIVNISSISVLDLSSNQFDQNSLVLSWV 279 (1011)
Q Consensus 200 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~l~~l~~L~~L~Ls~~~l~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~l 279 (1011)
+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++. .+..+
T Consensus 122 --------------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~ 173 (606)
T 3t6q_A 122 --------------------------FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL--SKEDM 173 (606)
T ss_dssp --------------------------GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE--CHHHH
T ss_pred --------------------------CCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CHHHH
T ss_conf --------------------------10122378223898879834114765456876568777656844554--96563
Q ss_pred HCCCCCC--EEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCCCCCCCCEEECC
Q ss_conf 0999976--99956998865674013488999999687998988743110289998699823
Q 001801 280 FGLSNLV--YLDLGSNDFQGSIPVGLQNLTSLRHLDLSYNDFNSSIPNWLASFSNLVHISLR 339 (1011)
Q Consensus 280 ~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 339 (1011)
..+++|+ .|++++|.+++..+..+. ...|+.|++++|. ..+..+..+.++....+.
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLW 231 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEE
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHH-HCCCCCCCCCCCH---HHHHHHHHCCCCCHHHEE
T ss_conf 322156403896679814754866730-0100135567726---677776513356442200
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=420.01 Aligned_cols=294 Identities=16% Similarity=0.184 Sum_probs=201.7
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCEEEECCCC
Q ss_conf 30023-36523346898533578968982475267668976347763454455577888800002777765278611442
Q 001801 558 YFLNF-SNSRINGEIPNLSKATGLRTVDLSSNNLSGTLPLISFQLESIDLSNNAFSGSISPVLCNGMRGELQVLNLENNS 636 (1011)
Q Consensus 558 ~~L~l-s~n~l~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~l~~n~ 636 (1011)
+.+++ ..+.+.+..+.+..+++++.+++++|.+.. ++ .+. .+++|+.|++++|.
T Consensus 264 ~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------------l~-~l~--~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY----------------------LE-DVP--KHFKWQSLSIIRCQ 318 (606)
T ss_dssp EEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC----------------------CC-CCC--TTCCCSEEEEESCC
T ss_pred HHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCHH----------------------HH-HCC--CCCCCCEEECCCCC
T ss_conf 450123665555432223548878987714766044----------------------35-433--40117789764666
Q ss_pred CCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 2356790122034586876279734324995524778565785757825112--78122189999599867982421367
Q 001801 637 FSGEIPDCWMNFLYLRVLNLGNNNFTGNLPPSLGSLGSLTLLHLQKNSLSGR--IPESLSNCNRLVSLNMDGNQFSGDIP 714 (1011)
Q Consensus 637 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~ip 714 (1011)
+ +.+| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+++. .|..+..+++|+.|++++|.+. .+|
T Consensus 319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~ 392 (606)
T 3vq2_A 319 L-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS 392 (606)
T ss_dssp C-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC
T ss_pred C-CCCC-CC-CCCCCCEEECCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCC-CCH
T ss_conf 7-6546-67-8875564454478685310--002489888797758736877520122146775548678899530-005
Q ss_pred HHHHHCCCCCCEEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3576506998399711542554588-123699988689822733133445012255557102489999999866775544
Q 001801 715 TWIGEKFSSMVILNLRSNIFDGQFP-TELCFLTSLQILDLGYNNLSGAIPKCISNLSAMVTVDYPLGDTHPGITDCSLYR 793 (1011)
Q Consensus 715 ~~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 793 (1011)
..+. .+++|+.|++++|.+.+..| ..+..+++|+.|++++|++.+..|..++.+++|
T Consensus 393 ~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------- 450 (606)
T 3vq2_A 393 ANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL--------------------- 450 (606)
T ss_dssp CCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC---------------------
T ss_pred HHCC-CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCC---------------------
T ss_conf 5406-888889658988705875376456462137889896897874335553477878---------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHHCCEEEEEECCCCCCEE-CCCHHCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 6799999778865421898417502342121126799744770000-274100011237644125763622255212589
Q 001801 794 SCLPRPRSFSDPIEKAFLVMKGKELEYSTILYLVALIDLSKNNFSG-EIPVEVTDLVALRSLNLSYNHFSGRIPDSIGAM 872 (1011)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LdLs~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l 872 (1011)
+.|++++|.+++ .+|..++.+++|+.|++++|.+++.+|..++.+
T Consensus 451 ----------------------------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 496 (606)
T 3vq2_A 451 ----------------------------------NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496 (606)
T ss_dssp ----------------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ----------------------------------CEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf ----------------------------------9898989837985467760457889989898885776486561546
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99879957588365348835448998996983367150049998-6457-657665679988899998999999
Q 001801 873 KSIEVIDFSNNQLSEEIPRSVSNLTFLNLLNLSYNYLSGEIPTS-TQLQ-SFDASCFIGNDLCGSPLSRNCTET 944 (1011)
Q Consensus 873 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~-~~~~~~~~~n~l~g~~~~~~c~~~ 944 (1011)
++|+.|++++|++++.+|..+..+++|+.||+++|+++ .+|.. ..+. .+... .+.++|+.+.|+..
T Consensus 497 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l-----~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFF-----NLTNNSVACICEHQ 564 (606)
T ss_dssp TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEE-----ECCSCCCCCSSTTH
T ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEE-----ECCCCCCCCCCCCH
T ss_conf 46898989899578748777068876898889898376-6687675210217488-----76289866477648
Done!