BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001802
(1011 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I6I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-559) Disease Mutant R45c
Length = 559
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|2XOA|A Chain A, Crystal Structure Of The N-Terminal Three Domains Of The
Skeletal Muscle Ryanodine Receptor (Ryr1)
Length = 559
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|4I0Y|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant C36r
Length = 536
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|4I37|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant R402g
Length = 536
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|4I7I|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant L14r
Length = 536
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|4I3N|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant D61n
Length = 536
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|4I1E|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant G249r
Length = 536
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|4I2S|A Chain A, Crystal Structure Of Rabbit Ryanodine Receptor 1 (residues
1-536) Disease Mutant I404m
Length = 536
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 744 SQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVL 779
+ E+++ M +L+ ++ +C CEE + GGHVL
Sbjct: 185 ASGELQVDASFMQTLWNMNPICSCCEEGYVTGGHVL 220
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 641 RVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLW 700
R TDS M +PG + + T +G + + + T T + A++
Sbjct: 5 RTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNT- 63
Query: 701 ITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQ 740
S + SF+ R+ D LS LR W + Q+Q
Sbjct: 64 ----STDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQ 99
>pdb|3ING|A Chain A, Crystal Structure Of Homoserine Dehydrogenase
(Np_394635.1) From Thermoplasma Acidophilum At 1.95 A
Resolution
Length = 325
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 345 IVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIEL---PWS 401
I N NG+ L D + + G+AE + ++ ++ S+ + +FG+E L +S
Sbjct: 179 IRNXANGRSLRDVVDDAIKKGIAESNPQDDLNGLDAARKSVILVNHIFGTEYTLNDVEYS 238
Query: 402 RIRELILKADSDLWDEIFED 421
+ E A+ L E++ D
Sbjct: 239 GVDERSYNANDRLVTEVYVD 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,595,188
Number of Sequences: 62578
Number of extensions: 1048188
Number of successful extensions: 2479
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2470
Number of HSP's gapped (non-prelim): 15
length of query: 1011
length of database: 14,973,337
effective HSP length: 108
effective length of query: 903
effective length of database: 8,214,913
effective search space: 7418066439
effective search space used: 7418066439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)