Query 001802
Match_columns 1011
No_of_seqs 171 out of 206
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:40:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2033 Low density lipoprotei 100.0 3E-163 6E-168 1382.9 65.2 842 16-1005 3-860 (863)
2 PF08700 Vps51: Vps51/Vps67; 99.3 7.5E-12 1.6E-16 114.6 10.1 79 19-97 4-86 (87)
3 PF04124 Dor1: Dor1-like famil 97.3 0.014 3E-07 67.0 19.1 230 29-275 6-245 (338)
4 PF04100 Vps53_N: Vps53-like, 97.1 0.088 1.9E-06 61.5 23.6 204 22-243 9-236 (383)
5 PF15469 Sec5: Exocyst complex 96.9 0.0079 1.7E-07 62.8 11.9 160 51-218 2-169 (182)
6 PF10475 DUF2450: Protein of u 94.7 0.52 1.1E-05 53.1 14.3 185 26-220 23-213 (291)
7 KOG2180 Late Golgi protein sor 94.2 7.7 0.00017 48.1 22.9 201 25-243 27-251 (793)
8 KOG2069 Golgi transport comple 92.7 7.1 0.00015 47.4 19.2 224 30-276 31-270 (581)
9 PF12022 DUF3510: Domain of un 92.4 0.45 9.8E-06 47.1 7.7 54 751-805 28-81 (125)
10 KOG2346 Uncharacterized conser 89.3 2.2 4.7E-05 50.6 10.3 182 25-217 41-226 (636)
11 PF10392 COG5: Golgi transport 84.2 4.2 9.1E-05 40.6 8.0 69 31-99 27-95 (132)
12 PF14923 CCDC142: Coiled-coil 78.3 8.5 0.00018 46.0 8.9 124 685-834 225-348 (450)
13 PF06248 Zw10: Centromere/kine 76.3 14 0.0003 45.9 10.5 153 29-182 6-162 (593)
14 KOG2347 Sec5 subunit of exocys 75.4 2.9 6.3E-05 52.6 4.2 126 30-157 184-318 (934)
15 PF04437 RINT1_TIP1: RINT-1 / 75.2 22 0.00048 43.1 11.7 127 681-834 299-426 (494)
16 PF04091 Sec15: Exocyst comple 72.7 1.4E+02 0.003 34.3 16.7 78 754-834 175-252 (311)
17 PF10241 KxDL: Uncharacterized 43.3 1.2E+02 0.0025 28.4 7.7 70 24-93 5-81 (88)
18 PF10474 DUF2451: Protein of u 39.8 1.5E+02 0.0033 32.7 9.2 73 752-832 86-166 (234)
19 PF08385 DHC_N1: Dynein heavy 39.0 8.1E+02 0.017 29.9 20.9 97 680-805 434-540 (579)
20 PF11855 DUF3375: Protein of u 28.4 3.9E+02 0.0084 32.6 11.0 121 55-199 174-299 (478)
21 PF14712 Snapin_Pallidin: Snap 24.0 4.9E+02 0.011 24.0 8.5 67 30-96 21-91 (92)
22 KOG2211 Predicted Golgi transp 24.0 9.3E+02 0.02 30.7 12.7 60 39-98 77-136 (797)
23 COG0015 PurB Adenylosuccinate 22.1 2.5E+02 0.0054 34.0 7.5 74 27-101 54-137 (438)
24 KOG3691 Exocyst complex subuni 21.9 5.4E+02 0.012 33.6 10.5 124 32-156 45-171 (982)
25 PF07393 Sec10: Exocyst comple 21.6 1E+03 0.022 30.5 13.4 73 753-834 576-648 (710)
26 PHA03154 hypothetical protein; 20.7 96 0.0021 34.9 3.5 42 565-607 26-67 (304)
No 1
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.8e-163 Score=1382.87 Aligned_cols=842 Identities=30% Similarity=0.416 Sum_probs=737.8
Q ss_pred CCCCCCChHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 001802 16 GGGGYGDAESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSL 95 (1011)
Q Consensus 16 ~~~~~~~~d~LF~~~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l 95 (1011)
++++.+|||.||++|+++|||.||+++|.+||+||||||+|||+||||||+|||||++|+++++.+.+++..++.+|+++
T Consensus 3 ~~l~~rDvd~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL 82 (863)
T KOG2033|consen 3 ANLLNRDVDTLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSL 82 (863)
T ss_pred CcccccCHHHHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhh---ccccccccccc
Q 001802 96 SLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILL---DVNKEVDHLNF 172 (1011)
Q Consensus 96 ~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~---~~~~~~~l~~f 172 (1011)
..+. .+..|+..+.+|.++++|++|||||||+++||.||++||+++|++|+.+|++++||++.|. ..+.+ +++|
T Consensus 83 ~a~s-vA~tp~raeqnp~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~l--l~nf 159 (863)
T KOG2033|consen 83 HANS-VAKTPGRAEQNPAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSML--LKNF 159 (863)
T ss_pred cccc-ccCCcchhhcCchhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHH--Hhhc
Confidence 8554 3456667777788899999999999999999999999999999999999999999999554 34567 8999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchH
Q 001802 173 PLLQHQCQIVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDV 252 (1011)
Q Consensus 173 Pil~~Qw~~l~~fr~~I~~~~~~~L~~~~~s~~~~~~aLaAl~Llesss~~d~L~~FL~~R~~ai~~~L~~~~~~~~~~~ 252 (1011)
|++.+||.++++||.+|.+++...|.+.+++.+++++||||++|+|+++|+|+|..||+.|+.+|.++|+. ..+.++.+
T Consensus 160 P~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdpsqvLelFL~~Rk~~il~lLn~-~p~~~~~v 238 (863)
T KOG2033|consen 160 PALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDPSQVLELFLEKRKEHILHLLND-GPSEPRRV 238 (863)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc-CCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 45566889
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccCCCchhHHHhhcCCCcccccCCCCCChHHHHhhhhhhhhhhhhh--------cC
Q 001802 253 VSVFCQVMKVIQITVAQVGELFLQVLNDMPLFYKVILASPPASQLFGGIPNPDEEVRLWKLFRDKLESVM--------VI 324 (1011)
Q Consensus 253 ~~vi~~~v~li~~TL~~v~aLF~~~l~~~pll~~~~l~~~~~~qlf~gi~~~~~e~~~w~~frp~l~~~~--------~~ 324 (1011)
+++||.+|+++++|+.+|++||++. +|+|+++...++..+. ++.+++|++.|++|+..+++.| .+
T Consensus 239 ka~il~~v~vl~~Tl~qv~elfl~~----~Llfstle~c~gq~~~---~~i~emE~~l~~sf~~lpesim~f~pr~lv~k 311 (863)
T KOG2033|consen 239 KATILNIVDVLKKTLAQVEELFLHG----ELLFSTLEVCNGQYKC---ELIREMEADLAYSFEKLPESIMDFVPRHLVEK 311 (863)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHhcCCccCC---CCchHHHHHHHHHHHhhHHHHhhccchhcccc
Confidence 9999999999999999999999986 8999998776666543 6678999999999998766633 47
Q ss_pred CCHHHHHHHHHHHHHHhh-hhhhhccccchhhhhccchhhHHHHHHHHHHhhhhhhhhcchhhhhhhccCCccCCChHHH
Q 001802 325 LDKDYIAKTCFSWLRECG-GEIVNKINGKFLIDTITTGKELGLAEKSIRETMDSKQVLEGSLDWLKSVFGSEIELPWSRI 403 (1011)
Q Consensus 325 Ls~e~i~~~l~~Wl~~~~-e~I~~~i~g~~LL~~V~S~k~La~ir~~v~~~l~~~~~~~~sl~wl~~~f~~~~~~~W~~i 403 (1011)
|+++++++.+++|+.+|+ ..|.+++. .++.+|+++|++.++.+.++. +...+.+|.++
T Consensus 312 ls~e~Lg~~lqQwvgk~n~a~i~~~i~--~~~~lv~~mkei~D~kd~lrt-------------------n~~~~~~wl~q 370 (863)
T KOG2033|consen 312 LSGEGLGTLLQQWVGKKNAAWIEKTIA--VTHKLVAEMKEIFDNKDQLRT-------------------NLQAITAWLKQ 370 (863)
T ss_pred ccHHHHHhhHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHh-------------------CCCcchHHHHH
Confidence 999999999999999998 89999994 999999999988888777664 23567899999
Q ss_pred HHHHhcCCCchHHHHhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhcCCCCCCcchhhhhccCCCCCCCcccccCCcc
Q 001802 404 RELILKADSDLWDEIFEDAFVQRMKMIIDSGFEDLSRVVNVANSIQVIGGDNYGELVDFQAYLNRPSTGGGVWFIEPNST 483 (1011)
Q Consensus 404 c~~lL~~~l~~W~~lfq~lf~~R~k~Ii~~~f~~i~~~~~l~~~l~~i~~~~~~~~~d~~~~~~~~s~~~~~W~~~~~~~ 483 (1011)
|..+++++++||+++||++|++|+|+||+++|.+.++-.. .+++..|.+. +.+++ .++||+++|+.
T Consensus 371 ~~~llgs~L~fyd~~~q~afvdR~k~li~ss~~sa~k~~~-v~al~eIes~----~sn~p---------l~~Wfespndl 436 (863)
T KOG2033|consen 371 DWPLLGSNLSFYDKLLQTAFVDRAKILIISSWASAMKLTY-VQALLEIESI----ESNAP---------LQKWFESPNDL 436 (863)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhc----cccCc---------cceeeeCCCCc
Confidence 9999999999999999999999999999999988777554 6788888752 22222 35677777654
Q ss_pred ccccccccccccCCCCcchhhhhhhccChhHHHHHHHHHHHHHHHHHHHhhhcCCCCCccchhh---HHHHHHHHHHHHH
Q 001802 484 VKKAGVVLGHKALPEDNDFQNCLNAYFGLEVSRIRDAVDSCCQNVLEDLLSFLESPKAPLRLKD---LAPYLQNKCYESM 560 (1011)
Q Consensus 484 ~~~~~l~~~~k~~~~~~~~~~~~~~~~~p~v~~lc~~lD~~L~~~L~Dl~~yl~~~~~~~r~~~---L~~~L~~~c~~~i 560 (1011)
+. ++....++.++ +|.+|.+.|++|.++ +|..||++|+.+++|++.|+++++ ..|++| +.+||++..-
T Consensus 437 p~--~ai~~~~~~p~--~fass~~~y~g~~is-lc~~~Ds~l~~kl~dLl~~les~t-t~r~aDk~sl~EfLre~a~--- 507 (863)
T KOG2033|consen 437 PQ--TAIFDERTYPP--DFASSQSHYGGISIS-LCNKFDSHLADKLSDLLDKLESKT-TKRFADKNSLFEFLRETAK--- 507 (863)
T ss_pred ch--hhhhhcccCch--hhhhhhcccCCchhH-HHHHHHHHHHHHHHHHHHhchhHH-HHHHhhhhhHHHHHHHhcc---
Confidence 32 22223334333 588999888888775 677799999999999999999983 236766 8889984322
Q ss_pred HHHHHHHHHHHhhHHHHHhhCCCCCchhHHhHHHHHHHHHHHHHHhcCCCCcccccCCcchhhhhhhhhhhccchhhhhh
Q 001802 561 STILMELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNHSKHIPVILGSPRFWAKETVAAVFDKLSPLLRQS 640 (1011)
Q Consensus 561 ~~il~~lk~~l~~l~~~~~~~~~~~~~~~~~~~~LflgRl~~al~~lcp~L~~~lg~~~~w~~~~~~a~~~~~~s~~r~~ 640 (1011)
+...++.++.-...... .+..|++.|+|.+|+++|||||.|+..|..
T Consensus 508 -----~~~~e~~S~~~G~~l~~--------~h~~L~~lRl~~~l~elsp~Lk~c~~qpse-------------------- 554 (863)
T KOG2033|consen 508 -----LNFFEFFSQKWGFSLKK--------RHFFLVLLRLSNFLNELSPALKNCVKQPSE-------------------- 554 (863)
T ss_pred -----hHHHHHHHHHHHHHhhh--------hhhHHhhHHHHHHHHHhChHHHhHHhCchh--------------------
Confidence 22223322211111110 147899999999999999999977765532
Q ss_pred hhhccccCCCCCCCcCCCcccccchhhHhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccC
Q 001802 641 RVATDSSMADSPGKQIPTGSRRQTSAATAALLGTNESESPKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDL-GKD 719 (1011)
Q Consensus 641 r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L-~~d 719 (1011)
+|||++-++++++ ++|||++++.+.++|+.+ .+|..|++++|.+.+.+.| .+|
T Consensus 555 -------------------SrkQ~~~~tael~------~akfeeic~~m~d~~~s~-~lW~~~v~dvL~h~llr~L~l~d 608 (863)
T KOG2033|consen 555 -------------------SRKQWLEQTAELC------IAKFEEICTPMADMATSN-ALWETMVTDVLQHLLLRLLELHD 608 (863)
T ss_pred -------------------HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhc
Confidence 2456666667663 789999999999999999 9999999999999999999 999
Q ss_pred CcccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHH
Q 001802 720 DGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIY 799 (1011)
Q Consensus 720 ~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~~q~~L~~~c~e~~rig~h~Lpk~~l~~~~~~l~~~vl~~Y 799 (1011)
|.++++++++.|+|++|+|++|+++ ++|||||+|||||+|+|||++|+||||||||+|||+|||+|+++|+.+|+.||
T Consensus 609 D~~svla~f~~W~el~l~e~dEsqs--tlkIrLPsqPslyiqSfL~rl~qeInrvggh~Lp~~vLQ~f~~sl~~k~~~~Y 686 (863)
T KOG2033|consen 609 DKQSVLARFLAWAELALAELDESQS--TLKIRLPSQPSLYIQSFLQRLHQEINRVGGHTLPPKVLQAFIQSLIGKLLCHY 686 (863)
T ss_pred ccchhhhhhhhHHHHHHHHHhcccc--eeeeecCCCccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877765 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhcccccchhhHHHHHhhHHhHHHhhcCCCCCCCccccccchhhhhccccchhhhhhhhHHhHHHHHHHHhcC
Q 001802 800 RNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSGGDSNRNESSKNSKAKFSFRRKQDQSQTKSHMREHVDGLINRFSQR 879 (1011)
Q Consensus 800 ~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 879 (1011)
|++..+.. . ..+||+||||||||||+.+||++++. .|+. ++||+++.+.|+++
T Consensus 687 E~l~~a~~-~--kasqn~aLQll~DLrfl~~Vl~~~~~--------------eR~~----------~DrI~~vt~qL~~~ 739 (863)
T KOG2033|consen 687 EGLAHAEC-T--KASQNIALQLLFDLRFLERVLAISRE--------------ERTL----------YDRIHAVTNQLRDY 739 (863)
T ss_pred hhhhHHHH-H--HHHHhhHHHHHHHHHHHHHHHhcCcc--------------cccc----------hhHHHHHHHHHHHh
Confidence 99987643 2 58999999999999999999999652 1444 45899999999999
Q ss_pred CCCccccccchHHHhHHHHHHHhhhhhhhhccccCcccccccCCCCCCCCCcccccCCCCCcccccccccCcCCCCCCcc
Q 001802 880 LDPIDWLTYEPYLRENEKQAYVRHAVLFGFFVQLNRMYTDTVQKLPTNSESNIMRCSTVPRFKYLPISAPALSSRATTKT 959 (1011)
Q Consensus 880 iDPfD~~v~~p~L~~n~~r~~~R~~vlfG~l~~~~~~~t~~~~~~~~~~~~Nil~ls~~prF~lLPis~p~~ssr~~~~~ 959 (1011)
||||||++|+||||+|++|+|+|++||||++|+.++|+++++++++++.+|||||||++|||||||||||+++++.++.+
T Consensus 740 iDPfD~~~f~phl~~n~~r~~~R~~vlfG~~t~~~~q~a~~as~l~~~~~~Nilplsss~rF~lLPismpaa~s~~s~e~ 819 (863)
T KOG2033|consen 740 IDPFDFELFAPHLTANVSRAASRLQVLFGVLTPAPSQGAAAASSLAHEADPNILPLSSSGRFPLLPISMPAAGSVTSAER 819 (863)
T ss_pred cCchhHHhhhhHHHHHHHHHHHHHhhhheeecCCccccchhhhhhhccCCCCccccccCCCccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccccCcccccccCCCCCccccchHhHhhhh
Q 001802 960 SAPILLDEISSRATWKAYTNGELSGNINLDDNSSFGVATPFLKSFM 1005 (1011)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1005 (1011)
.+|..++|-+.+. |++.+ |+.+++.|..+|.+||++ +++||
T Consensus 820 k~pv~~p~~sta~-~pt~~-G~~~r~~dsee~~ssa~s---ff~~~ 860 (863)
T KOG2033|consen 820 KSPVQEPVESTAT-TPTRK-GNGARKGDSEESKSSAAS---FFGMS 860 (863)
T ss_pred cCCCCCchhhhcC-CCCCC-CcccccccccccccchHh---Hhccc
Confidence 9999999999988 99999 999999999999999988 88887
No 2
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=99.32 E-value=7.5e-12 Score=114.63 Aligned_cols=79 Identities=33% Similarity=0.520 Sum_probs=74.9
Q ss_pred CCCChHHhhc----cCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 001802 19 GYGDAESLFR----TKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILS 94 (1011)
Q Consensus 19 ~~~~~d~LF~----~~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~ 94 (1011)
+..||+..|. ++++++|+.++++|+.+|+.++++||++||++|||+|++||+|..|+..+..+.+.+.+++..|..
T Consensus 4 ~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~ 83 (87)
T PF08700_consen 4 ENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQS 83 (87)
T ss_pred CcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999997 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcc
Q 001802 95 LSL 97 (1011)
Q Consensus 95 l~~ 97 (1011)
+.+
T Consensus 84 l~~ 86 (87)
T PF08700_consen 84 LQE 86 (87)
T ss_pred hhc
Confidence 754
No 3
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.28 E-value=0.014 Score=67.01 Aligned_cols=230 Identities=17% Similarity=0.246 Sum_probs=149.9
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCCCCCC
Q 001802 29 TKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLA 108 (1011)
Q Consensus 29 ~~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~~~~~~~~~~~~~ 108 (1011)
++++++++.--..+..++++-..++..+.=+.|+=+|++|+.+.........+.+.+.++...+..+...... ......
T Consensus 6 s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~-f~~~~~ 84 (338)
T PF04124_consen 6 SLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQR-FSSKAQ 84 (338)
T ss_pred cCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5677777777788999999999999999999999999999999999988877777777666655443333210 000000
Q ss_pred CCCCcccc---hhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHh
Q 001802 109 NPNPNRLK---IYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESF 185 (1011)
Q Consensus 109 s~~~~~~~---~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l~~f 185 (1011)
.-...+.. ...-..++.=++++|..+-.|+..|.|-+|=.++...+.+.+... ..|++..-+..+...
T Consensus 85 ~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~---------~~~lv~~i~~ev~~~ 155 (338)
T PF04124_consen 85 KISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFP---------NIPLVKSIAQEVEAA 155 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhcc---------CchhHHHHHHHHHHH
Confidence 00001111 112224555578999999999999999999888887776655432 257888877777777
Q ss_pred HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHH
Q 001802 186 KVQISQRGRERLLDNGLGIQAYADALAAVAVID---ELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFCQVMKV 262 (1011)
Q Consensus 186 r~~I~~~~~~~L~~~~~s~~~~~~aLaAl~Lle---sss~~d~L~~FL~~R~~ai~~~L~~~~~~~~~~~~~vi~~~v~l 262 (1011)
....+...-..|+.+ +.. ..|+-.+..+. ..+..+.=..||..|..++...+...+..+ ...-++..+++
T Consensus 156 ~~~ml~~Li~~L~~~-l~l---~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~~---~~~~lkr~iei 228 (338)
T PF04124_consen 156 LQQMLSQLINQLRTP-LKL---PACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKSD---PYRYLKRYIEI 228 (338)
T ss_pred HHHHHHHHHHHHcCc-ccH---HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhhh---HHHHHHHHHHH
Confidence 777777777777665 333 33333333332 223344556799999999998776533222 23345555665
Q ss_pred HHH----HHHHhhhhhh
Q 001802 263 IQI----TVAQVGELFL 275 (1011)
Q Consensus 263 i~~----TL~~v~aLF~ 275 (1011)
+.. ++.+-.++|+
T Consensus 229 ~R~~~fdiitqY~aIF~ 245 (338)
T PF04124_consen 229 YREHLFDIITQYRAIFP 245 (338)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 543 4444455664
No 4
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.10 E-value=0.088 Score=61.55 Aligned_cols=204 Identities=17% Similarity=0.223 Sum_probs=150.0
Q ss_pred ChHHhh-ccCChhHHHHHHHHHHHHHHHHHHHHHHhh------cCcchhHHhhhH--------HHHHHHHhHHHHHHHHH
Q 001802 22 DAESLF-RTKPISEIRNVELTTKKQIQQKQEELRQLV------GTRYRDLIDSAD--------SIVLMKSSCESISSNIS 86 (1011)
Q Consensus 22 ~~d~LF-~~~ti~EIr~ie~~lr~eie~KkeeLR~mV------GeRYRDLL~aAD--------tIv~M~~~s~~v~~~l~ 86 (1011)
..+++| ...++..|..+-.+++.++.+-.+++++.| |.++++-|+.|. .|.+++.-+++-...|.
T Consensus 9 ~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~ 88 (383)
T PF04100_consen 9 YINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQ 88 (383)
T ss_pred HHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788 568889999999999999998888888777 677766555543 56677777777788888
Q ss_pred HHHHHHhhhcccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccc
Q 001802 87 SIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKE 166 (1011)
Q Consensus 87 ~m~~~c~~l~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~ 166 (1011)
+|.+.+..|-.... .+ .....+--|+..|+.+-+..-.+++.++|-++|.++.....|......+..
T Consensus 89 ~it~dIk~LD~AKr-----NL-------T~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yks- 155 (383)
T PF04100_consen 89 EITRDIKQLDNAKR-----NL-------TQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKS- 155 (383)
T ss_pred HHHHHHHHHHHHHH-----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccC-
Confidence 88887776644421 00 011233348889999999999999999999999999988888877776654
Q ss_pred cccccchHHHHHHHHHHHhHHHHHHHHHHhhccc---------CCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHH
Q 001802 167 VDHLNFPLLQHQCQIVESFKVQISQRGRERLLDN---------GLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWI 237 (1011)
Q Consensus 167 ~~l~~fPil~~Qw~~l~~fr~~I~~~~~~~L~~~---------~~s~~~~~~aLaAl~Llesss~~d~L~~FL~~R~~ai 237 (1011)
.|-+.+.+..+..++..+...+..-++.. ......+.+|-..+=.|+...-.+++.-|...-..-.
T Consensus 156 -----i~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY 230 (383)
T PF04100_consen 156 -----IPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEY 230 (383)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 48888888888887776666666544322 1234455555555556677777799999999888888
Q ss_pred HHHhcC
Q 001802 238 LQTLGG 243 (1011)
Q Consensus 238 ~~~L~~ 243 (1011)
..++..
T Consensus 231 ~~iF~~ 236 (383)
T PF04100_consen 231 RRIFRE 236 (383)
T ss_pred HHHHcc
Confidence 888864
No 5
>PF15469 Sec5: Exocyst complex component Sec5
Probab=96.94 E-value=0.0079 Score=62.81 Aligned_cols=160 Identities=16% Similarity=0.280 Sum_probs=115.2
Q ss_pred HHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHH------HHHHHHHHHhhhcccccccCCCCCCCCCC--cccchhhhhh
Q 001802 51 EELRQLVGTRYRDLIDSADSIVLMKSSCESISS------NISSIHSHILSLSLSAETATTPKLANPNP--NRLKIYGIAC 122 (1011)
Q Consensus 51 eeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~------~l~~m~~~c~~l~~~~~~~~~~~~~s~~~--~~~~~~~~aa 122 (1011)
++|.++|.+-|=..|.+-|+|..|+.....-.. .+..+...+............|-+...+. .-.....+..
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 689999999999999999999999988843332 24444444433222211000000100000 0123466778
Q ss_pred hhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHhHHHHHHHHHHhhcccCC
Q 001802 123 RVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIVESFKVQISQRGRERLLDNGL 202 (1011)
Q Consensus 123 qiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l~~fr~~I~~~~~~~L~~~~~ 202 (1011)
+.++|-++|-.|..+|..|+|-.|-.-|-.++.+...... ..+++.+-|..++.--.++.......|.+...
T Consensus 82 r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~--------~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~ 153 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQ--------QVPVFQKVWSEVEKIIEEFREKLWEKLLSPPS 153 (182)
T ss_pred HHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999887766532 25788899999888888888888889999988
Q ss_pred CHHHHHHHHHHHHhhc
Q 001802 203 GIQAYADALAAVAVID 218 (1011)
Q Consensus 203 s~~~~~~aLaAl~Lle 218 (1011)
+.++..++..-+.=|+
T Consensus 154 s~~~~~~~i~~Ll~L~ 169 (182)
T PF15469_consen 154 SQEEFLKLIRKLLELN 169 (182)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 8888888887666664
No 6
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=94.75 E-value=0.52 Score=53.11 Aligned_cols=185 Identities=10% Similarity=0.123 Sum_probs=141.6
Q ss_pred hhcc-CChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCC
Q 001802 26 LFRT-KPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATT 104 (1011)
Q Consensus 26 LF~~-~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~~~~~~~~~ 104 (1011)
+.+. .+.++|.+.+.++....+-=-..|=+.|.++|-....+-..|-+++.........+.++++.+..........+.
T Consensus 23 l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L 102 (291)
T PF10475_consen 23 LPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADENLTKSGL 102 (291)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344 677789899999999999999999999999999999999999999999999999999999888765544210000
Q ss_pred CCCCCCCCcc---cchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHH
Q 001802 105 PKLANPNPNR---LKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQI 181 (1011)
Q Consensus 105 ~~~~s~~~~~---~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~ 181 (1011)
........+ ......-.+||-+.++-..|=.+|+.|+|..|-.+..=++.+...+.+ +.-++.....
T Consensus 103 -~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~---------~~c~~~L~~~ 172 (291)
T PF10475_consen 103 -EILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKG---------YSCVRHLSSQ 172 (291)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc---------chHHHHHhHH
Confidence 000000011 234566678889999999999999999999999999999888665543 4445555566
Q ss_pred HHHhHHHHHHHHHHhhccc--CCCHHHHHHHHHHHHhhcCC
Q 001802 182 VESFKVQISQRGRERLLDN--GLGIQAYADALAAVAVIDEL 220 (1011)
Q Consensus 182 l~~fr~~I~~~~~~~L~~~--~~s~~~~~~aLaAl~Lless 220 (1011)
+......|.......|... .-+++.+..-+-||.+|.+.
T Consensus 173 L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~ 213 (291)
T PF10475_consen 173 LQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKT 213 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh
Confidence 6777788888888888754 68889999999999999843
No 7
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=7.7 Score=48.12 Aligned_cols=201 Identities=18% Similarity=0.225 Sum_probs=139.8
Q ss_pred Hhh-ccCChhHHHHHHHHHHHHHHHHHHHHHHhh------cCcch-hHHhhh-------HHHHHHHHhHHHHHHHHHHHH
Q 001802 25 SLF-RTKPISEIRNVELTTKKQIQQKQEELRQLV------GTRYR-DLIDSA-------DSIVLMKSSCESISSNISSIH 89 (1011)
Q Consensus 25 ~LF-~~~ti~EIr~ie~~lr~eie~KkeeLR~mV------GeRYR-DLL~aA-------DtIv~M~~~s~~v~~~l~~m~ 89 (1011)
+|| ..-++..|..+=++++.+|..-..+||..| |.|-. +|=++= -.|.+++.-+++....+.+|.
T Consensus 27 ~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiT 106 (793)
T KOG2180|consen 27 ELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEIT 106 (793)
T ss_pred HhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 567 667999999999999999999999999776 44432 122222 234444444444555555555
Q ss_pred HHHhhhcccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhcccccccc
Q 001802 90 SHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDH 169 (1011)
Q Consensus 90 ~~c~~l~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l 169 (1011)
+.+..|.-..+ .+ .....+--|++.|++.-|..-..+++++|=.||..|-.-..|......+..+
T Consensus 107 rdIKqLD~AKk-----NL-------TtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v--- 171 (793)
T KOG2180|consen 107 RDIKQLDFAKK-----NL-------TTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSV--- 171 (793)
T ss_pred HHHHhhhHHHh-----hH-------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcch---
Confidence 55544422210 00 1123344588999999999999999999999999998888777777766553
Q ss_pred ccchHHHHHHHHHHHhHHHHHHHHHHhhccc---------CCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Q 001802 170 LNFPLLQHQCQIVESFKVQISQRGRERLLDN---------GLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQT 240 (1011)
Q Consensus 170 ~~fPil~~Qw~~l~~fr~~I~~~~~~~L~~~---------~~s~~~~~~aLaAl~Llesss~~d~L~~FL~~R~~ai~~~ 240 (1011)
|-+......|+.++..+...+..-+... ..+.+-+.++.--.-.+|.+...+.++-|+..-..-+.++
T Consensus 172 ---~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~ey~~I 248 (793)
T KOG2180|consen 172 ---DEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEEYEQI 248 (793)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH
Confidence 6677777788888888888777776644 1224555555545555789999999999999998888888
Q ss_pred hcC
Q 001802 241 LGG 243 (1011)
Q Consensus 241 L~~ 243 (1011)
+..
T Consensus 249 F~e 251 (793)
T KOG2180|consen 249 FRE 251 (793)
T ss_pred Hhc
Confidence 875
No 8
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=7.1 Score=47.44 Aligned_cols=224 Identities=16% Similarity=0.224 Sum_probs=141.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHH-------HHHHHHhhhccccccc
Q 001802 30 KPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNIS-------SIHSHILSLSLSAETA 102 (1011)
Q Consensus 30 ~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~-------~m~~~c~~l~~~~~~~ 102 (1011)
.++++.|.=...++.|+..-..+++++-=.-||-+|++|+-+..+.+.-++....+. ++...|.+......
T Consensus 31 ~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s~~~~f~~~~~-- 108 (581)
T KOG2069|consen 31 KPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTSPCKRFQDFAE-- 108 (581)
T ss_pred CcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhhHHHHHHHHHH--
Confidence 557777777777999999999999999999999999999999888777766654443 34445544332210
Q ss_pred CCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 001802 103 TTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIV 182 (1011)
Q Consensus 103 ~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l 182 (1011)
...+.+...........+++=|+++|+.|=+|++.|.|..|=.+--.+..+...- +. .|++++-...+
T Consensus 109 ---~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~----~~-----~pvi~~i~~~v 176 (581)
T KOG2069|consen 109 ---EISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRF----GT-----IPVIQEIATEV 176 (581)
T ss_pred ---HhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhc----cc-----chHHHHHHHHH
Confidence 0011111112234556788889999999999999999999888776665544332 21 37777766666
Q ss_pred HHhHHHHHHHHHHhhccc-----CCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHH
Q 001802 183 ESFKVQISQRGRERLLDN-----GLGIQAYADALAAVAVIDELDPEQVLGLFLETRKTWILQTLGGNANFTSSDVVSVFC 257 (1011)
Q Consensus 183 ~~fr~~I~~~~~~~L~~~-----~~s~~~~~~aLaAl~Llesss~~d~L~~FL~~R~~ai~~~L~~~~~~~~~~~~~vi~ 257 (1011)
.+...-++...-..|+.. -+....+......+ +..+.=-.||..|-+|+..+++....... ..-+.
T Consensus 177 ~~tv~~ll~qL~~~l~~pl~l~~cirvv~ylr~~~~~------t~~~LRl~fl~~rd~~l~k~l~~I~~~~~---~~~l~ 247 (581)
T KOG2069|consen 177 EQTVQKLLEQLIQQLRTPLQLPECIRVVGYLRRMAVL------TENQLRLKFLQARDAWLEKILEDISTNNP---YLYLK 247 (581)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHhcccccH---HHHHH
Confidence 666666666666666543 12223333333333 33444446799999999998876433222 12233
Q ss_pred HHHHHHHHHHH----Hhhhhhhc
Q 001802 258 QVMKVIQITVA----QVGELFLQ 276 (1011)
Q Consensus 258 ~~v~li~~TL~----~v~aLF~~ 276 (1011)
....++..++. |-.++|+.
T Consensus 248 ~~i~~~r~~lf~~i~qY~aifpe 270 (581)
T KOG2069|consen 248 KTIEIIRVNLFDIITQYLAVFPE 270 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444444443 44555644
No 9
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=92.45 E-value=0.45 Score=47.12 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=44.5
Q ss_pred eecCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001802 751 SLPSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLST 805 (1011)
Q Consensus 751 rlP~~pS~~~q~~L~~~c~e~~rig~h~Lpk~~l~~~~~~l~~~vl~~Y~~~~~~ 805 (1011)
.+|..||+||-+.|--+++=+... ++.++..+.++++..++..|...|-..++.
T Consensus 28 ~~Pt~~S~yV~~il~Pl~~F~~~~-~~~~~~~~~~~~~~~v~~~v~~~y~~~~~e 81 (125)
T PF12022_consen 28 PVPTKPSPYVSSILRPLKSFLEEY-SSYLSPEIIEEWLQKVITEVTERYYEIASE 81 (125)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999988887744444 889999999999999999888888776543
No 10
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.33 E-value=2.2 Score=50.61 Aligned_cols=182 Identities=17% Similarity=0.209 Sum_probs=123.6
Q ss_pred HhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCC
Q 001802 25 SLFRTKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATT 104 (1011)
Q Consensus 25 ~LF~~~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~~~~~~~~~ 104 (1011)
.|-+..++++.-.=|..+-.+|-.--..+.++|=|-|--.|.|-|||..|+...-.+......+.+......... .+.
T Consensus 41 kL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~i~~~s--~~l 118 (636)
T KOG2346|consen 41 KLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSSIQSKS--DGL 118 (636)
T ss_pred HhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHHHhhhh--ccc
Confidence 344788999999999999999999999999999999999999999999999877665554444333322111111 111
Q ss_pred CC-CCCCC---CcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHH
Q 001802 105 PK-LANPN---PNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQ 180 (1011)
Q Consensus 105 ~~-~~s~~---~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~ 180 (1011)
.. +.... .+....|.+--+++++-|.|-.+-+|.+.+.|-.|-+.|-.|.-+.+.-.+. ..|....+
T Consensus 119 ~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~~~------psfq~~~~--- 189 (636)
T KOG2346|consen 119 AGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYDGR------PSFQEDDV--- 189 (636)
T ss_pred cchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcCCC------CcHHHhcc---
Confidence 10 00000 0112346777889999999999999999999999888887776544433311 11222222
Q ss_pred HHHHhHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhh
Q 001802 181 IVESFKVQISQRGRERLLDNGLGIQAYADALAAVAVI 217 (1011)
Q Consensus 181 ~l~~fr~~I~~~~~~~L~~~~~s~~~~~~aLaAl~Ll 217 (1011)
.=...+.+|++.....|++.....+..++|.--+..+
T Consensus 190 ~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~l 226 (636)
T KOG2346|consen 190 PSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQL 226 (636)
T ss_pred chHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhc
Confidence 1234477788888889999888888888775544333
No 11
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=84.15 E-value=4.2 Score=40.61 Aligned_cols=69 Identities=22% Similarity=0.239 Sum_probs=62.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccc
Q 001802 31 PISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSA 99 (1011)
Q Consensus 31 ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~~~~ 99 (1011)
+.-.+-.--+++..+|++-..++++.|-++|-|||.-+..|.......+.|...+..+...+.++....
T Consensus 27 ~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 27 SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566678899999999999999999999999999999999999999999999999999998886654
No 12
>PF14923 CCDC142: Coiled-coil protein 142
Probab=78.27 E-value=8.5 Score=45.99 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHHHHHHH
Q 001802 685 LTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYIISFL 764 (1011)
Q Consensus 685 l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L~~d~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~~q~~L 764 (1011)
.-+.|..++.+..++-...+.+.-...|...... -+-|.--. .=-+|..||.|+..++
T Consensus 225 ~~~~Lq~~s~e~~~~f~~~C~~~s~~~f~~~mP~---------g~~WR~~~-------------~~~lP~~pS~Yv~~~v 282 (450)
T PF14923_consen 225 NIAKLQSLSSECLRLFSQDCRKMSLAIFELCMPS---------GRYWRRSL-------------SPELPSAPSEYVEYVV 282 (450)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCC---------cchhcccC-------------CCCCCCCccHHHHHHH
Confidence 3344445666666666555544443444433332 24587321 2237999999999887
Q ss_pred HHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHhhHHhHHHhhcC
Q 001802 765 CRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLSG 834 (1011)
Q Consensus 765 ~~~c~e~~rig~h~Lpk~~l~~~~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~ 834 (1011)
-.+-.=+=+ |-+.||...-...+.-+++.++++.-+++=. +..+-|..||+||+=|+-|+.+++..
T Consensus 283 ~~vl~PVl~-g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~---~kIKFS~~GAlQL~~DF~~Vr~wl~~ 348 (450)
T PF14923_consen 283 ETVLEPVLQ-GVQGLPPEAQIPALSQALTAMLEAWLDHILM---HKIKFSLQGALQLRQDFGYVRDWLES 348 (450)
T ss_pred HHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHHH---ccceeeHHHHHHHHHHHHHHHHHHHh
Confidence 766444433 3455666666666666777777776666643 35666999999999999999999976
No 13
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=76.26 E-value=14 Score=45.95 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=101.0
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHH-hhhcccccccCCCCC
Q 001802 29 TKPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHI-LSLSLSAETATTPKL 107 (1011)
Q Consensus 29 ~~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c-~~l~~~~~~~~~~~~ 107 (1011)
..+.+.++..=.++...|++=|+|.+.++=++|-|.+....+..++...+..+.+.|.++...+ .............+.
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~ 85 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEEL 85 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 3566778888899999999999999999999999999888888888777777777775554432 111000000000000
Q ss_pred ---CCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHH
Q 001802 108 ---ANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQYILLDVNKEVDHLNFPLLQHQCQIV 182 (1011)
Q Consensus 108 ---~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~~~L~~~~~~~~l~~fPil~~Qw~~l 182 (1011)
..+-......+.+..+++-+.+.-+.+..++++|+|+.||...--.+.+...+.... ..+..-++.+..+|..+
T Consensus 86 ~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~-~~~~~i~~~Lk~e~~~l 162 (593)
T PF06248_consen 86 QELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSK-FEELKILKLLKDEYSEL 162 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCc-ccccHHHHHHHHHHHHH
Confidence 000000123466666777777888889999999999999999999998888874211 00022256666666544
No 14
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.42 E-value=2.9 Score=52.60 Aligned_cols=126 Identities=17% Similarity=0.262 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHH-----HHHHHHhhhccccccc--
Q 001802 30 KPISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNIS-----SIHSHILSLSLSAETA-- 102 (1011)
Q Consensus 30 ~ti~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~-----~m~~~c~~l~~~~~~~-- 102 (1011)
-|.++.+.-=..+..+...+++.=++||-.-+-.+|..-||+..+++--++..+..+ .+...+.+........
T Consensus 184 ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~ 263 (934)
T KOG2347|consen 184 TSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFE 263 (934)
T ss_pred ccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHH
Confidence 466777777778899999999999999999999999999999999988777332211 1222222211111000
Q ss_pred --CCCCCCCCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHHH
Q 001802 103 --TTPKLANPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHVQ 157 (1011)
Q Consensus 103 --~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l~ 157 (1011)
-.++.... +-.....+-.|.|+|-..|..|-+.+..|+|-.+-.=|=.|..+.
T Consensus 264 ~vl~Rk~~AD--stRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~ 318 (934)
T KOG2347|consen 264 DVLERKDKAD--STRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLF 318 (934)
T ss_pred HHHhcccccc--cHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhh
Confidence 01111111 112567888899999999999999999999988877777766544
No 15
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=75.19 E-value=22 Score=43.14 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHHH
Q 001802 681 KLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLYI 760 (1011)
Q Consensus 681 k~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L~~d~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~~ 760 (1011)
-+++.-..+..+..++...=+..+...+...+..+... ..|..+... .=.-|..||+.+
T Consensus 299 iFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~----------~~W~~~~~~-----------~~~~~~~~S~el 357 (494)
T PF04437_consen 299 IFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKR----------SQWSSIESP-----------SDSSPLSPSPEL 357 (494)
T ss_dssp TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT------------GGGT------------------------GGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------cCCCCcccc-----------cccccCCCCHHH
Confidence 34444444444444444444444444444455555553 359866322 223467889888
Q ss_pred HHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHH-HhhhhhhcccccchhhHHHHHhhHHhHHHhhcC
Q 001802 761 ISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRN-FLSTIEAHESQVSEKGVLQVLFDLRFSADVLSG 834 (1011)
Q Consensus 761 q~~L~~~c~e~~rig~h~Lpk~~l~~~~~~l~~~vl~~Y~~-~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~~ 834 (1011)
...|-.+-.-++.+-.. ||......+-++++..+-...-+ .+. ..+-|+.|+.|+.+|++.|-.+|..
T Consensus 358 ~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~-----~n~Fs~~Ga~Ql~~D~~~L~~~~~~ 426 (494)
T PF04437_consen 358 VPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILM-----SNKFSRAGAAQLQFDMRALFSVFSQ 426 (494)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTT-----TS-B-HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhh-----cCeeChhHHHHHHHHHHHHHHHHHh
Confidence 88888777777766554 99999999988888887777544 543 2256999999999999999999965
No 16
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=72.73 E-value=1.4e+02 Score=34.29 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHhhHHhHHHhhc
Q 001802 754 SMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVLS 833 (1011)
Q Consensus 754 ~~pS~~~q~~L~~~c~e~~rig~h~Lpk~~l~~~~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl~ 833 (1011)
..||.|+..++-=+-.-++-+ --.||..+.+.+.-+.+..+-....+++-+ ....++|..++-|+-.|++||.....
T Consensus 175 ~~ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~--~~vk~in~~al~~~~~Dv~~lE~f~~ 251 (311)
T PF04091_consen 175 GEPSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLS--DDVKRINMNALQNFDLDVKYLESFAD 251 (311)
T ss_dssp -S--HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT-----------TTHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcC--CcccccCHHHHHHHHHHHHHHHHHHH
Confidence 349999987655444434333 456999999999999999999988888853 35778899999999999999999885
Q ss_pred C
Q 001802 834 G 834 (1011)
Q Consensus 834 ~ 834 (1011)
.
T Consensus 252 ~ 252 (311)
T PF04091_consen 252 S 252 (311)
T ss_dssp T
T ss_pred h
Confidence 5
No 17
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=43.30 E-value=1.2e+02 Score=28.45 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=55.1
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHHHHHHHHHhhc---Ccc----hhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 001802 24 ESLFRTKPISEIRNVELTTKKQIQQKQEELRQLVG---TRY----RDLIDSADSIVLMKSSCESISSNISSIHSHIL 93 (1011)
Q Consensus 24 d~LF~~~ti~EIr~ie~~lr~eie~KkeeLR~mVG---eRY----RDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~ 93 (1011)
..+|..-.+.+|-..+.++-..++.|.++|..... .|| .|+-+-..++.+|+.+.+.|...|..|.....
T Consensus 5 ~~~~d~~d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 5 TQAVDPEDLDEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999999999999986543 343 34556677888899988888888888887664
No 18
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=39.81 E-value=1.5e+02 Score=32.65 Aligned_cols=73 Identities=18% Similarity=0.226 Sum_probs=47.1
Q ss_pred ecCCCcHHHHHHHHHHH---HHHHHh-cCCcCCHHHHHHHHHHH----HHHHHHHHHHHhhhhhhcccccchhhHHHHHh
Q 001802 752 LPSMPSLYIISFLCRAC---EEIHRI-GGHVLDKSILQKFSSRL----LEKVIGIYRNFLSTIEAHESQVSEKGVLQVLF 823 (1011)
Q Consensus 752 lP~~pS~~~q~~L~~~c---~e~~ri-g~h~Lpk~~l~~~~~~l----~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLf 823 (1011)
+|.++|.||-.++=.+. ..+.++ +...+|+++...|-+.+ ...+++.|.+ ..+.|-.|=-++.+
T Consensus 86 v~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~--------vkKCs~eGRalM~l 157 (234)
T PF10474_consen 86 VMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSR--------VKKCSNEGRALMQL 157 (234)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCCChhhHHHHHH
Confidence 48899999987665432 223334 44568888554444433 3334566663 34567778888889
Q ss_pred hHHhHHHhh
Q 001802 824 DLRFSADVL 832 (1011)
Q Consensus 824 Dlrfl~~vl 832 (1011)
|++-+..-|
T Consensus 158 D~q~~~~~l 166 (234)
T PF10474_consen 158 DFQQLQNKL 166 (234)
T ss_pred HHHHHHHHH
Confidence 999888777
No 19
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=38.99 E-value=8.1e+02 Score=29.95 Aligned_cols=97 Identities=16% Similarity=0.322 Sum_probs=58.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCcccccccCCCcceEEEEEecCCCCceeeEEeecCCCcHH
Q 001802 680 PKLKELTRTTRDLCIRAHSLWITWLSDELSFILSRDLGKDDGLSATTSLRGWEETVVKQEQSDESQSEMKISLPSMPSLY 759 (1011)
Q Consensus 680 ~k~~~l~~~l~~~~~~a~~~W~~~~~~~L~~~~~~~L~~d~~L~~~~~~~~Wee~~I~ee~e~g~~v~s~IrlP~~pS~~ 759 (1011)
.+++++.+.|.....+.|.-|...+.......+...|. ....+.++ .+.+=..|
T Consensus 434 ~~~~~l~~~l~~~e~~~~~~W~~~i~~~~~~~L~~~ll-------------------~~~~~~~~----~l~VNfd~--- 487 (579)
T PF08385_consen 434 QKYNELLKKLDEYEKEIFEEWLNEIESNINSSLSQPLL-------------------KRRSDENG----RLVVNFDP--- 487 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccee-------------------eeccCCCc----eEEEeCCH---
Confidence 46788999999988999999988765544222222111 11111111 22232333
Q ss_pred HHHHHHHHHHHHHHh--cCCcCCHHHHHHHHH--------HHHHHHHHHHHHHhhh
Q 001802 760 IISFLCRACEEIHRI--GGHVLDKSILQKFSS--------RLLEKVIGIYRNFLST 805 (1011)
Q Consensus 760 ~q~~L~~~c~e~~ri--g~h~Lpk~~l~~~~~--------~l~~~vl~~Y~~~~~~ 805 (1011)
-|..+++|+.-. -|..+|..++..+.. ..+..++.-|....+.
T Consensus 488 ---~l~~l~rEvr~l~~lg~~iP~~~~~~~~~~~~l~~~~~~L~~~~~~yn~i~~~ 540 (579)
T PF08385_consen 488 ---ELLTLLREVRYLQSLGFEIPEEILELYEQAEKLYPYAESLQEIVRFYNSIIES 540 (579)
T ss_pred ---HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246688888854 678999999865433 2366677788877654
No 20
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=28.40 E-value=3.9e+02 Score=32.61 Aligned_cols=121 Identities=11% Similarity=0.090 Sum_probs=65.1
Q ss_pred HhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhcccccccCCCCCCCCCCcccchhhhhhhhhhhccChhHH
Q 001802 55 QLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLSAETATTPKLANPNPNRLKIYGIACRVKYLVDTPENI 134 (1011)
Q Consensus 55 ~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~~~~~~~~~~~~~s~~~~~~~~~~~aaqiKLL~d~PE~I 134 (1011)
+.+.+|||+++..|..+. .+-.+|.+++.+|.+.++.--.. ...+-+..+.-+++--+.|
T Consensus 174 ~~~~er~~~i~~la~~L~---~DFr~V~~~~r~l~r~lr~~i~~-----------------~~~~~G~vL~~~~~~~d~l 233 (478)
T PF11855_consen 174 TQARERARQILQLARELP---ADFRRVEDNFRELDRALRERIID-----------------WDGSRGEVLDEYFDGYDAL 233 (478)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-----------------ccccHHHHHHHHHHhHHHH
Confidence 445566666666554332 34455555555555554321100 0112233344444444444
Q ss_pred HhhhccCchHHHHHHHHHHHHHHHHhhcc-ccccccccchHH----HHHHHHHHHhHHHHHHHHHHhhcc
Q 001802 135 WGCLDESMFLEAATRYVRAKHVQYILLDV-NKEVDHLNFPLL----QHQCQIVESFKVQISQRGRERLLD 199 (1011)
Q Consensus 135 W~~Ld~~~~L~AA~lyllar~l~~~L~~~-~~~~~l~~fPil----~~Qw~~l~~fr~~I~~~~~~~L~~ 199 (1011)
+.+ +.|+-+.|.+-|+...--...|... ..+ +. .|++ ..+...+..+...+...+..+...
T Consensus 234 ~~S-dqGrsF~aF~~~L~d~~~~~~l~~~l~~V--l~-~~~~~~L~~~~r~~Lr~l~~~l~~~~~~V~~~ 299 (478)
T PF11855_consen 234 AES-DQGRSFRAFWDFLLDPERQAELDELLDQV--LA-RPFARDLDPDQRRFLRRLHRRLLEAGEEVQRT 299 (478)
T ss_pred hcC-CCCCcHHHHHHHHcCHHHHHHHHHHHHHH--Hc-CcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 4689999999999877655555521 111 11 1222 245667888888888888877764
No 21
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=24.03 E-value=4.9e+02 Score=23.97 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=49.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhc--Ccc--hhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 001802 30 KPISEIRNVELTTKKQIQQKQEELRQLVG--TRY--RDLIDSADSIVLMKSSCESISSNISSIHSHILSLS 96 (1011)
Q Consensus 30 ~ti~EIr~ie~~lr~eie~KkeeLR~mVG--eRY--RDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~ 96 (1011)
..+.+++.-+..|...|+.-.++|+..=. .-+ =|+..-+..++.++..+..+.+.+..++.+...+.
T Consensus 21 ~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 21 QQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777778888888888888875543 212 24556777888888888888888888888876653
No 22
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.96 E-value=9.3e+02 Score=30.74 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhccc
Q 001802 39 ELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHILSLSLS 98 (1011)
Q Consensus 39 e~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~~~ 98 (1011)
=.+|...|.+-++|||+.|=.|.-+|+.-|-.+..-.-.-..+...+++++....++...
T Consensus 77 ~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~i~riknd 136 (797)
T KOG2211|consen 77 CDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSEIKRIKND 136 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666666789999999999999999999888776666666777777777766665443
No 23
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=22.15 E-value=2.5e+02 Score=33.97 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=64.6
Q ss_pred hccCChhHHHHHHHHHHHHHHHHHHHHHHhhc---Ccc-------hhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHhhhc
Q 001802 27 FRTKPISEIRNVELTTKKQIQQKQEELRQLVG---TRY-------RDLIDSADSIVLMKSSCESISSNISSIHSHILSLS 96 (1011)
Q Consensus 27 F~~~ti~EIr~ie~~lr~eie~KkeeLR~mVG---eRY-------RDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~~l~ 96 (1011)
|....++.|+++|+.++.++=.--..|+..+| .+| .|++++|.. ..|+...+-+...+.++-..+..+.
T Consensus 54 ~~~~d~~~i~eie~~t~HdV~a~v~~l~e~~~~~~~~~VH~GaTS~DI~Dta~~-L~lk~a~~ii~~~l~~l~~~L~~~A 132 (438)
T COG0015 54 FAEFDLERIKEIEAETGHDVKALVRALAEKVGEEASEYVHFGATSQDIIDTALA-LQLKEALDLILPDLKRLIEALAELA 132 (438)
T ss_pred ccccCHHHHHHHHHHhCCCcHHHHHHHHHhcCcccccceecccchHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999999999999999999999999999 566 799999976 4789999999999999999998887
Q ss_pred ccccc
Q 001802 97 LSAET 101 (1011)
Q Consensus 97 ~~~~~ 101 (1011)
..++.
T Consensus 133 ~~~k~ 137 (438)
T COG0015 133 LEHKD 137 (438)
T ss_pred HHhCC
Confidence 77653
No 24
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.91 E-value=5.4e+02 Score=33.59 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHhhhHHHHHHHHhHHHHHHHHHHHHHHHh---hhcccccccCCCCCC
Q 001802 32 ISEIRNVELTTKKQIQQKQEELRQLVGTRYRDLIDSADSIVLMKSSCESISSNISSIHSHIL---SLSLSAETATTPKLA 108 (1011)
Q Consensus 32 i~EIr~ie~~lr~eie~KkeeLR~mVGeRYRDLL~aADtIv~M~~~s~~v~~~l~~m~~~c~---~l~~~~~~~~~~~~~ 108 (1011)
.+++..--.+|-..-++=-..|-.+|-+.|-|+-..--+-.++-+.+....+.+..+..++. ++-.... ..+.+.-
T Consensus 45 ~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~r-deLqklw 123 (982)
T KOG3691|consen 45 TEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRR-DELQKLW 123 (982)
T ss_pred ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 33333333344444445556788888888888866544444444444444444444444322 2111110 0111210
Q ss_pred CCCCcccchhhhhhhhhhhccChhHHHhhhccCchHHHHHHHHHHHHH
Q 001802 109 NPNPNRLKIYGIACRVKYLVDTPENIWGCLDESMFLEAATRYVRAKHV 156 (1011)
Q Consensus 109 s~~~~~~~~~~~aaqiKLL~d~PE~IW~~Ld~~~~L~AA~lyllar~l 156 (1011)
-.+....+...+-.+|.=|..+|++|-.+++..+|++|+.+...+.-+
T Consensus 124 ~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~ 171 (982)
T KOG3691|consen 124 AENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWEL 171 (982)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011123445677888888999999999999999999999999877743
No 25
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=21.62 E-value=1e+03 Score=30.46 Aligned_cols=73 Identities=29% Similarity=0.378 Sum_probs=48.3
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHhhHHhHHHhh
Q 001802 753 PSMPSLYIISFLCRACEEIHRIGGHVLDKSILQKFSSRLLEKVIGIYRNFLSTIEAHESQVSEKGVLQVLFDLRFSADVL 832 (1011)
Q Consensus 753 P~~pS~~~q~~L~~~c~e~~rig~h~Lpk~~l~~~~~~l~~~vl~~Y~~~~~~~~~~~~~~sq~~aLQlLfDlrfl~~vl 832 (1011)
|..+--.+..+|...|..+... |++..+..|..++..++.....+.+. .+++|..|++||.-|+.+..+++
T Consensus 576 ~T~ac~~vv~~L~~~~~~~~~~----l~~~nl~~f~~elg~~l~~~l~~h~k-----k~~vs~~Gg~~l~~Dl~~Y~~~~ 646 (710)
T PF07393_consen 576 PTPACQEVVEFLERHCSLLKGS----LDGSNLDVFLQELGERLHRLLLKHLK-----KFTVSSTGGLQLIKDLNEYQDFI 646 (710)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH----ccchhHHHHHHHHHHHHHHHHHHHHH-----hCccCchhHHHHHHHHHHHHHHH
Confidence 3333444555666666555544 44556666666666665555554443 57789999999999999999999
Q ss_pred cC
Q 001802 833 SG 834 (1011)
Q Consensus 833 ~~ 834 (1011)
..
T Consensus 647 ~~ 648 (710)
T PF07393_consen 647 RS 648 (710)
T ss_pred HH
Confidence 54
No 26
>PHA03154 hypothetical protein; Provisional
Probab=20.69 E-value=96 Score=34.87 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=29.1
Q ss_pred HHHHHHHhhHHHHHhhCCCCCchhHHhHHHHHHHHHHHHHHhc
Q 001802 565 MELKRELDNLYAAIESGTESVPTAIIVERSLFIGRLLFAFQNH 607 (1011)
Q Consensus 565 ~~lk~~l~~l~~~~~~~~~~~~~~~~~~~~LflgRl~~al~~l 607 (1011)
+-|++|++.+...-.+. +...+...+++++|++|+||.|.-|
T Consensus 26 ~~I~~E~~~l~~~t~~p-~~~~P~~~lER~lfLakilQiL~qH 67 (304)
T PHA03154 26 NVIKAEFKNVILDTVVP-KFSQPATHLEKGDFLLKICQLLMIH 67 (304)
T ss_pred HHHHHHhhheeecccCC-cccccHHHHHHHHHHHHHHHHHHHH
Confidence 34666777765433222 2234568899999999999998876
Done!