BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001803
(1011 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2T1|AP3BA_ARATH AP3-complex subunit beta-A OS=Arabidopsis thaliana GN=AP3BA PE=2 SV=2
Length = 987
Score = 1134 bits (2933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/1014 (58%), Positives = 751/1014 (74%), Gaps = 37/1014 (3%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
MAGIRLHVI+PL L AV KCARDP+V+VR+CAANALPKLH+LR EE SAIEE+VGILLN
Sbjct: 1 MAGIRLHVIAPLALAAVSKCARDPAVYVRRCAANALPKLHDLRLEEHASAIEELVGILLN 60
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
D SPGVVGAAAAAF SICPNNF LIG+NY+ LCQILPDVEEWGQILLI LLRYVVA HG
Sbjct: 61 DHSPGVVGAAAAAFTSICPNNFKLIGKNYKKLCQILPDVEEWGQILLIGTLLRYVVARHG 120
Query: 121 LVKESIMSSLLCIESS-HSEKDVFDVNVALE-DNGIPSRTYDSELVNLVSRSYIEGLGEY 178
LV+ES+M S+ S+ EKD ++ L+ ++G S ++D LV+LVS+ YI+G EY
Sbjct: 121 LVRESLMLSIHGTNSNGFCEKDGLGRDLTLDKEDGGKSDSFDVNLVSLVSKCYIQGPDEY 180
Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
L+RSS T+ SS + TS N+DVK+LLQCTSPLLWS+NSAVVLAAAGV WIM+P
Sbjct: 181 LSRSSCTDTVSSAFDTKETTSIAHNEDVKILLQCTSPLLWSNNSAVVLAAAGVQWIMAPL 240
Query: 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALK 298
EDVK+IVKPLLF+LRSS ASKYVVLCNI VFAKA+P LF PH+E+FF+ SSD+YQ KA K
Sbjct: 241 EDVKKIVKPLLFLLRSSSASKYVVLCNILVFAKAVPSLFAPHFENFFICSSDAYQVKAYK 300
Query: 299 LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
LE+LS I T SSI+S+ +EF+DYI+DPDRRFAADTVAAIGLCA++L + TC++GLLAL
Sbjct: 301 LEMLSLIATTSSIASILREFEDYIKDPDRRFAADTVAAIGLCAKRLMTIPTTCLDGLLAL 360
Query: 359 IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
+RQE D ES +GEA VL+Q+++SI+++I++DP HEKV+IQLFRSLDSIKV AR
Sbjct: 361 VRQESFAGDFESADGEAGVLVQAVMSIQTMIERDPLRHEKVLIQLFRSLDSIKVAAARAT 420
Query: 419 IIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI 478
IIWMVG Y S+G IPRMLTT+ KYLAW FKSEA ETKLQILNT KVL+ A+ GD +
Sbjct: 421 IIWMVGVYCSLGHIIPRMLTTITKYLAWSFKSEASETKLQILNTIAKVLISAEAGDFHML 480
Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQENKDLPLVLVECI 537
R+ Y+ EL E DL+YD+RDR RF KKL S L S P E++ A QEN + +VE +
Sbjct: 481 KRIVVYVFELGEYDLSYDIRDRTRFLKKLLSCKLASHEPAEDSVASQEN--IAAHVVEHV 538
Query: 538 FRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTA 597
F ++ + +++RFYLPGSLSQIVLHAAPGYEPLPKPCS + ++ Q S+ +D+
Sbjct: 539 FGRKLKSVSPITLHNRFYLPGSLSQIVLHAAPGYEPLPKPCSFVYEEQDQLSD-LDKQRE 597
Query: 598 LGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGDS---ASEGDRNCD 654
+ GS ++S + DE S+YDS+ S SD S GD +++ +
Sbjct: 598 AAADLDGSE-------ESSETGDENGSSDYDSESS--NGSDFSSEGDERTVSNDANDPAA 648
Query: 655 PLIQISDAGIACSNENGASHSGFPDLEGMMSKRALESWLDEQPGSSSPSASEQIQVRQSS 714
PLIQIS+ ++ D E + S+RAL+ WLD+QP +S+ + S + S
Sbjct: 649 PLIQISETSVSA------------DQEELRSRRALDLWLDDQPSTSNQTPSALNSNQSSY 696
Query: 715 ARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETM 774
A+ISIG++G +VK KSY+L+DP NG+GLKV Y+F SE S +SP VC+E FEN S+E +
Sbjct: 697 AKISIGDVGSRVKPKSYSLVDPGNGSGLKVDYAFLSEVSNVSPLHVCVEVLFENSSAEPI 756
Query: 775 SEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRF 834
EV L DEES K D ++ TL A++ S +++PTL+PMEEI+ LEP Q+ KR+++VRF
Sbjct: 757 LEVNLEDEESMKVADSSEQTLVGKANA--SYNNIPTLIPMEEISCLEPHQSTKRLIQVRF 814
Query: 835 HHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFT 894
HHHLLP++L LH N KK+PVKLRPD+GY +KP M +E F+ ESRLPGMFEY+R CTF
Sbjct: 815 HHHLLPMRLTLHYNEKKVPVKLRPDLGYLVKPFSMSIEEFLATESRLPGMFEYSRRCTFD 874
Query: 895 DHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRF 954
DH+ D T+ KDK+L ICES+ K+LSN+N+ LVSVD+PVA +DA+GL LRF
Sbjct: 875 DHVK--DSRTENG---KDKFLSICESITLKVLSNSNLHLVSVDLPVANSLEDATGLRLRF 929
Query: 955 SSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLVESS 1008
SS+IL + +P LITITVEGKC+E L ++ K+NCEETVFGLNLLNRI NF+VE S
Sbjct: 930 SSKILSSEIPLLITITVEGKCTEVLNLTVKINCEETVFGLNLLNRIANFMVEPS 983
>sp|Q13367|AP3B2_HUMAN AP-3 complex subunit beta-2 OS=Homo sapiens GN=AP3B2 PE=1 SV=2
Length = 1082
Score = 294 bits (752), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 194/582 (33%), Positives = 312/582 (53%), Gaps = 80/582 (13%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ IR+ +I P++++A+ + A D S +VRK AA+A+PKL+ L ++ IE ++ LL
Sbjct: 134 LSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIE-VIEKLLA 192
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
D++ V G+ AF +CP LI +NYR LC +L DVEEWGQ+++I +L RY A
Sbjct: 193 DKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISMLTRY--ARTQ 250
Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
+ + SLL ++EK + ED +G G T
Sbjct: 251 FLSPTQNESLL---EENAEKAFYGSE---EDEA-------------------KGAGSEET 285
Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
++ +R + + D +LLL+ T PLL S ++AVV+A A +++ ++PK +
Sbjct: 286 AAAAAPSRKPYV---------MDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKAE 336
Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
V I K L+ +LRS +YVVL N+ + +F P+ + F++ S+D Q K LKLE
Sbjct: 337 VGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKLE 396
Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
+L+++ E++I +V +EFQ YIR D+ F A T+ AIG CA + ++ +TC+ GL+ L+
Sbjct: 397 VLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLL- 455
Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
N + V+ +S++ IK +++ P+ H ++I L + D+I+VP AR I+
Sbjct: 456 ----------SNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKLTDNIQVPMARASIL 505
Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
W++GEY +PR+ VL+ +A F +E KLQ++N K+ L +
Sbjct: 506 WLIGEYCE---HVPRIAPDVLRKMAKSFTAEEDIVKLQVINLAAKLYLT----NSKQTKL 558
Query: 481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQEN-KDL-----PLVL 533
L Y+L LA+ D NYD+RDRARF ++L VP E+ AL + K L P +
Sbjct: 559 LTQYVLSLAKYDQNYDIRDRARFTRQLI-------VPSEQGGALSRHAKKLFLAPKPAPV 611
Query: 534 VECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLP 575
+E F+ + D F L GSLS ++ A GY+ LP
Sbjct: 612 LESSFKDR----------DHFQL-GSLSHLLNAKATGYQELP 642
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 27/177 (15%)
Query: 719 IGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVT 778
+ +GRQ LL G GL V Y+FS + + P +V + F N S +
Sbjct: 854 VSGVGRQ------ELLHRVAGEGLAVDYTFSRQPFSGDPHMVSVHIHFSNSSDTPI---- 903
Query: 779 LVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 838
K L + L S + EI SL PG++ ++ + F
Sbjct: 904 -------KGLHVGTPKLPAGIS----------IQEFPEIESLAPGESATAVMGINFCDST 946
Query: 839 LPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFEYARSCTFTD 895
L ++ V ++P +G + PV M F + + +L GM E D
Sbjct: 947 QAANFQLCTQTRQFYVSIQPPVGELMAPVFMSENEFKKEQGKLMGMNEITEKLMLPD 1003
>sp|Q32PG1|AP3B1_BOVIN AP-3 complex subunit beta-1 OS=Bos taurus GN=AP3B1 PE=2 SV=1
Length = 1084
Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 203/624 (32%), Positives = 318/624 (50%), Gaps = 100/624 (16%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ IR+ +I P++++A+ + + D S +VRK AA+A+ KL+ L E+ IE I+ LL
Sbjct: 139 LSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIE-IIEKLLK 197
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
D+S V G+ AF +CP+ LI +NYR LC +L DVEEWGQ+++I +L RY A
Sbjct: 198 DKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHMLTRY--ARTQ 255
Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
V S + DV LEDN YDS+ E
Sbjct: 256 FV------------SPWRQGDV------LEDN--EKDFYDSD--------------EEQK 281
Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
+D R ++ D +LL++ T PLL S N+AVV+A A ++W ++PK +
Sbjct: 282 EKADKRKRPYAMD----------PDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHIAPKSE 331
Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
I K L+ +LRSS +Y+VL NI + +F P+ + F+V S+D+ K LKLE
Sbjct: 332 AGIISKSLVRLLRSSREVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDATMIKILKLE 391
Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
IL+++ E++IS++ +EFQ Y++ D++FAA T+ IG CA + ++++TC+ GL+ L+
Sbjct: 392 ILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATSITEVSDTCLNGLVCLL- 450
Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
N + V+ +S++ IK +++ P H ++I + + LDSI VP AR I+
Sbjct: 451 ----------SNRDEIVVAESVVVIKKLLQMQPMQHGEIIKHMAKLLDSITVPVARASIL 500
Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
W++GE ++P++ VL+ A F SE KLQILN K+ L T+
Sbjct: 501 WLIGENCE---RVPKIAPDVLRKTAKSFTSEDDLVKLQILNLGAKLYLTNSKQ-----TK 552
Query: 481 LFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
L + Y+L L + D NYD+RDR RF ++L N E++ AL + + IF
Sbjct: 553 LLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN------EKSGALSK-------YAKKIFL 599
Query: 540 KQENLAASE-PINDRFYLP-GSLSQIVLHAAPGY-------EPLPKPCSSLCDDLGQFSN 590
Q+ E P DR + G+LS + A GY E P P +
Sbjct: 600 AQKPAPLLESPFKDRDHFQLGTLSHTLNTKATGYLELSNWPEVAPDPSVRNVE------- 652
Query: 591 SIDRTTALGEEWTGSSSNGTDDPD 614
L +EWT + ++PD
Sbjct: 653 ----VIELAKEWTPAGKAKKENPD 672
>sp|Q9JME5|AP3B2_MOUSE AP-3 complex subunit beta-2 OS=Mus musculus GN=Ap3b2 PE=1 SV=2
Length = 1082
Score = 290 bits (742), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 196/584 (33%), Positives = 314/584 (53%), Gaps = 84/584 (14%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ IR+ +I P++++A+ + A D S +VRK AA+A+PKL+ L ++ IE ++ LL
Sbjct: 134 LSSIRVPIIVPIMMLAIKEAASDMSPYVRKTAAHAIPKLYSLDSDQKDQLIE-VIEKLLA 192
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
D++ V G+ AF +CP LI +NYR LC +L DVEEWGQ+++I +L RY A
Sbjct: 193 DKTTLVAGSVVMAFEEVCPERIDLIHKNYRKLCNLLIDVEEWGQVVIISMLTRY--ARTQ 250
Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT-YDSELVNLVSRSYIEGLGEYL 179
+ + SLL E+N P + Y SE +G G
Sbjct: 251 FLSPTQNESLL------------------EEN--PEKAFYGSE------EDEAKGPGSEE 284
Query: 180 TRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE 239
++ AR + + D +LLL+ T PLL S ++AVV+A A +++ ++PK
Sbjct: 285 AATAALPARKPYV---------MDPDHRLLLRNTKPLLQSRSAAVVMAVAQLYFHLAPKA 335
Query: 240 DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
+V I K L+ +LRS +YVVL N+ + +F P+ + F++ S+D Q K LKL
Sbjct: 336 EVGVIAKALVRLLRSHSEVQYVVLQNVATMSIKRRGMFEPYLKSFYIRSTDPTQIKILKL 395
Query: 300 EILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALI 359
E+L+++ E++I +V +EFQ YIR D+ F A T+ AIG CA + ++ +TC+ GL+ L+
Sbjct: 396 EVLTNLANETNIPTVLREFQTYIRSMDKDFVAATIQAIGRCATNIGRVRDTCLNGLVQLL 455
Query: 360 RQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMI 419
N + V+ +S++ IK +++ P+ H ++I L + D+I+VP AR I
Sbjct: 456 -----------SNRDELVVAESVVVIKKLLQMQPAQHGEIIKHLAKLTDNIQVPMARASI 504
Query: 420 IWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLC-AKGGDMWTI 478
+W++GEY +P++ VL+ +A F +E KLQ++N K+ L +K + T
Sbjct: 505 LWLIGEYCE---HVPKIAPDVLRKMAKSFTAEEDIVKLQVINLAAKLYLTNSKQTKLLT- 560
Query: 479 TRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVP-EETNALQEN-KDL-----PL 531
Y+L LA+ D NYD+RDRARF ++L VP E+ AL + K L P
Sbjct: 561 ----QYVLSLAKYDQNYDIRDRARFTRQLI-------VPSEQGGALSRHAKKLFLAPKPA 609
Query: 532 VLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLP 575
++E F+ + D F L GSLS ++ A GY+ LP
Sbjct: 610 PILESSFKDR----------DHFQL-GSLSHLLNAKATGYQELP 642
>sp|Q7YRF1|AP3B1_CANFA AP-3 complex subunit beta-1 OS=Canis familiaris GN=AP3B1 PE=2 SV=1
Length = 1091
Score = 285 bits (730), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 190/574 (33%), Positives = 303/574 (52%), Gaps = 82/574 (14%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ IR+ +I P++++A+ + + D S +VRK AA+A+ KL+ L E+ IE ++ LL
Sbjct: 139 LSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIE-VIEKLLK 197
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
D+S V G+ AF +CP+ LI +NYR LC +L DVEEWGQ+++I +L RY A
Sbjct: 198 DKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHMLTRY--ARTQ 255
Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
V S E D LEDN +++ E
Sbjct: 256 FV------------SPWKEDD------GLEDN---------------EKNFYE------- 275
Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
S D +D + + D +LL++ T PLL S N+AVV+A A ++W +SPK +
Sbjct: 276 -SDDEQKEKTDQKKKPYA---MDPDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSE 331
Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
V I K L+ +LRS+ +Y+VL NI + + P+ + F+V S+D K LKLE
Sbjct: 332 VGIISKSLVRLLRSNREVQYIVLQNIATMSIQRKGMLEPYLKSFYVRSTDPTMIKILKLE 391
Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
IL+++ E++IS++ +EFQ Y++ D++FAA T+ IG CA + ++ +TC+ GL+ L+
Sbjct: 392 ILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATSISEVTDTCLSGLVCLL- 450
Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
N + V+ +S++ IK +++ P+ H ++I + + LDSI VP AR I+
Sbjct: 451 ----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKLLDSITVPVARASIL 500
Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
W++GE ++P++ VL+ +A F +E KLQILN K+ L T+
Sbjct: 501 WLIGENCE---RVPKIAPDVLRKMAKSFTNEDDLVKLQILNLGAKLYLTNSKQ-----TK 552
Query: 481 LFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
L + Y+L L + D NYD+RDR RF ++L N E++ AL + + IF
Sbjct: 553 LLTQYILNLGKYDQNYDIRDRTRFIRQLIVPN------EKSGALSK-------YAKKIFL 599
Query: 540 KQENLAASE-PINDRFYLP-GSLSQIVLHAAPGY 571
Q+ E P DR + G+LS + A GY
Sbjct: 600 AQKPAPLLESPFKDRDHFQLGTLSHTLNTKAIGY 633
>sp|O00203|AP3B1_HUMAN AP-3 complex subunit beta-1 OS=Homo sapiens GN=AP3B1 PE=1 SV=3
Length = 1094
Score = 282 bits (721), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 191/572 (33%), Positives = 302/572 (52%), Gaps = 78/572 (13%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ IR+ +I P++++A+ + + D S +VRK AA+A+ KL+ L E+ IE ++ LL
Sbjct: 139 LSSIRVPIIVPIMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIE-VIEKLLK 197
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
D+S V G+ AF +CP+ LI +NYR LC +L DVEEWGQ+++I +L RY A
Sbjct: 198 DKSTLVAGSVVMAFEEVCPDRIDLIHKNYRKLCNLLVDVEEWGQVVIIHMLTRY--ARTQ 255
Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLT 180
V S E D LEDNG +++ E
Sbjct: 256 FV------------SPWKEGD------ELEDNG---------------KNFYE------- 275
Query: 181 RSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240
S D +D +T + D +LL++ T PLL S N+AVV+A A ++W +SPK +
Sbjct: 276 -SDDDQKEKTDKKKKPYT---MDPDHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSE 331
Query: 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLE 300
I K L+ +LRS+ +Y+VL NI + +F P+ + F+V S+D K LKLE
Sbjct: 332 AGIISKSLVRLLRSNREVQYIVLQNIATMSIQRKGMFEPYLKSFYVRSTDPTMIKTLKLE 391
Query: 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360
IL+++ E++IS++ +EFQ Y++ D++FAA T+ IG CA + ++ +TC+ GL+ L+
Sbjct: 392 ILTNLANEANISTLLREFQTYVKSQDKQFAAATIQTIGRCATNILEVTDTCLNGLVCLL- 450
Query: 361 QELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII 420
N + V+ +S++ IK +++ P+ H ++I + + LDSI VP AR I+
Sbjct: 451 ----------SNRDEIVVAESVVVIKKLLQMQPAQHGEIIKHMAKLLDSITVPVARASIL 500
Query: 421 WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480
W++GE ++P++ VL+ +A F SE KLQILN K+ L T+
Sbjct: 501 WLIGENCE---RVPKIAPDVLRKMAKSFTSEDDLVKLQILNLGAKLYLTNSKQ-----TK 552
Query: 481 LFS-YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFR 539
L + Y+L L + D NYD+RDR RF ++L N+ S + P L+E F+
Sbjct: 553 LLTQYILNLGKYDQNYDIRDRTRFIRQLIVPNVKSGALSKYAKKIFLAQKPAPLLESPFK 612
Query: 540 KQENLAASEPINDRFYLPGSLSQIVLHAAPGY 571
+ D F L G+LS + A GY
Sbjct: 613 DR----------DHFQL-GTLSHTLNIKATGY 633
>sp|Q556J8|AP3B_DICDI AP-3 complex subunit beta OS=Dictyostelium discoideum GN=ap3b-1
PE=3 SV=1
Length = 1108
Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 185/634 (29%), Positives = 305/634 (48%), Gaps = 120/634 (18%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEEITSAIEEIVGI 57
M+ IR+ I ++++A+ K +D S FVRK AA A+ K+H+L +QE + +E I
Sbjct: 118 MSSIRVIDIIEVIILAIEKSVKDTSPFVRKAAAFAIAKVHKLDCDKQEPLIDLLE----I 173
Query: 58 LLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVA 117
LLND S V+GAA AF +CP F L+ ++YR +CQ+L D +EW Q+++++IL +Y
Sbjct: 174 LLNDTSTMVLGAAIVAFNELCPQRFDLLHQHYRKICQLLADFDEWSQVIVLDILTKYA-- 231
Query: 118 SHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGE 177
S C +S+ ++K++ + Y + +
Sbjct: 232 ---------RSQFRCPDSTMNDKNI------------------KQFKKKSKSFYSDEEDQ 264
Query: 178 YLTRSSDTNARSSDLNGARFTSGKTND-DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236
++ + L F S + D D +LLL+ T PLL S N+AVV+A + +++ +
Sbjct: 265 EDDEPENSLYKKKPLERDMFDSSEEIDMDHRLLLKSTLPLLQSRNNAVVMAVSSLYFYCA 324
Query: 237 PKEDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKA 296
P + +++ K L+ ILRS +Y+ L NI P +F PH +FF+ SSD S
Sbjct: 325 PSIEAQKVGKSLVRILRSGPEVQYITLTNISTMVTLRPSMFEPHLSEFFIHSSDPEYSIK 384
Query: 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLL 356
LKLEIL+ + T +I + KEF++Y+++ D++F A T+ AIG CA +P + +C+ GL+
Sbjct: 385 LKLEILTRLATPENIGKILKEFKEYVKNEDKKFVAATIQAIGSCASTVPDVTESCIYGLM 444
Query: 357 ALIRQELLTSDIESGNGEADVLIQSIISIKSI----------------------IKQDPS 394
+L+ N V+ +S+I +K + +K++ S
Sbjct: 445 SLL-----------SNQSTVVVAESVIVLKRLLQLNATNEKLEKLEKEKEKEKDVKENQS 493
Query: 395 C------------HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442
++ +I+ L + LD+++VP AR I+W++GEY ++P + V +
Sbjct: 494 TISKHSSSNNSIKYDNIILHLSKLLDTLQVPSARASIVWVIGEYC---YRVPLVAPDVFR 550
Query: 443 YLAWCFKSEAVETKLQILNTTIKVLL------------------CAKGGDMWTITRLFSY 484
L F E KL+ LN K+ + IT +F Y
Sbjct: 551 KLVKSFSDEHESVKLETLNLGSKLYVQFTDNNSTTTTDNSIPNEFKNERTKEKITLMFQY 610
Query: 485 LLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENL 544
+L LA+ D NYD+RD +R K + + E T ++ N ++ I Q+ +
Sbjct: 611 VLNLAKFDQNYDIRDNSRMLKHFYFNT------ENTQSINSN-------IKQIVINQKPI 657
Query: 545 AASEPIND---RFYLPGSLSQIVLHAAPGYEPLP 575
I++ RF L GSLS IV H A GY LP
Sbjct: 658 PTETSISEDRQRFTL-GSLSHIVNHTALGYTALP 690
Score = 42.4 bits (98), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 25/150 (16%)
Query: 722 IGRQVKAKSYTLLDPANGNGLKVYYSF----SSEASTISPQLVCLETFFENCSSETMSEV 777
I K+ LL P GL + Y F +E + P+ ++ +N S ET +++
Sbjct: 845 INSTTKSVKKILLKPTISGGLSIDYCFIRIRDNEEFSCQPRYNIIQLNIKNQSDETFTDI 904
Query: 778 TLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHH 837
+++++ +L +D+ P+E S+EP Q +++ + V F+
Sbjct: 905 SIINK------------------NLIDGADISEFDPIE---SIEPNQAIQKQIYVLFNST 943
Query: 838 LLPLKLALHCNGKKLPVKLRPDIGYFIKPV 867
K + N PV L P IG + P+
Sbjct: 944 SQSCKFEISFNKGNFPVTLTPIIGELLIPI 973
>sp|Q9Z1T1|AP3B1_MOUSE AP-3 complex subunit beta-1 OS=Mus musculus GN=Ap3b1 PE=1 SV=2
Length = 1105
Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 132/374 (35%), Positives = 209/374 (55%), Gaps = 43/374 (11%)
Query: 205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGASKYVVLC 264
D +LL++ T PLL S N+AVV+A A ++W +SPK + I K L+ +LRS+ +Y+VL
Sbjct: 297 DHRLLIRNTKPLLQSRNAAVVMAVAQLYWHISPKSEAGVISKSLVRLLRSNREVQYIVLQ 356
Query: 265 NIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRD 324
NI + +F P+ + F+V S+D K LKLEIL+++ E++IS++ +EFQ Y+R
Sbjct: 357 NIATMSIERKGMFEPYLKSFYVRSTDPTMIKTLKLEILTNLANEANISTLLREFQTYVRS 416
Query: 325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384
D++FAA T+ IG CA + ++ +TC+ GL+ L+ N + V+ +S++
Sbjct: 417 QDKQFAAATIQTIGRCATSISEVTDTCLNGLVCLL-----------SNRDEIVVAESVVV 465
Query: 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444
IK +++ P+ H ++I + + LDSI VP AR I+W++GE ++P++ VL+ +
Sbjct: 466 IKKLLQMQPAQHGEIIRHMAKLLDSITVPVARASILWLIGENCE---RVPKIAPDVLRKM 522
Query: 445 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFS-YLLELAECDLNYDVRDRARF 503
A F SE KLQILN K+ L T+L + Y+L L + D NYD+RDR RF
Sbjct: 523 AKSFTSEDDLVKLQILNLAAKLYLTNSKQ-----TKLLTQYILNLGKYDQNYDIRDRTRF 577
Query: 504 FKKLFSHNLCSQVPEETNALQENKD------LPLVLVECIFRKQENLAASEPINDRFYLP 557
++L N E++ AL + P L+E F+ + DRF L
Sbjct: 578 IRQLIVPN------EKSGALSKYAKKIFLAPKPAPLLESPFKDR----------DRFQL- 620
Query: 558 GSLSQIVLHAAPGY 571
G+LS + A GY
Sbjct: 621 GTLSHTLNIKASGY 634
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ IR+ +I P++++A+ + + D S +VRK AA+A+ KL+ L E+ IE ++ LL
Sbjct: 139 LSSIRVPIIVPVMMLAIKEASADLSPYVRKNAAHAIQKLYSLDPEQKEMLIE-VIEKLLK 197
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D+S V G+ AF +CP+ LI RNYR LC +L DVEEWGQ+++I +L RY
Sbjct: 198 DKSTLVAGSVVMAFEEVCPDRIDLIHRNYRKLCNLLVDVEEWGQVVIIHMLTRY 251
Score = 33.5 bits (75), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 27/164 (16%)
Query: 726 VKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESH 785
V K++ LL +G GL +Y F + S ++V ++ N S + + +
Sbjct: 877 VPTKTHELLHRMHGKGLAAHYCFPRQPCIFSDKMVSVQITLTNTSDRKIENIHI------ 930
Query: 786 KALDLADLTLATTASSLTSQSDLPTLVPMEE---ITSLEPGQTMKRILEVRFHHHLLPLK 842
LP + M I SLEP ++ + + F
Sbjct: 931 ------------------GGKGLPVGMQMHAFHPIDSLEPKGSVTVSVGIDFCDSTQTAS 972
Query: 843 LALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFE 886
L V L+P +G + PV M + F + + L GM E
Sbjct: 973 FQLCTKDDCFNVTLQPPVGELLSPVAMSEKDFKKEQGTLTGMNE 1016
>sp|Q759E2|AP3B_ASHGO AP-3 complex subunit beta OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=APL6 PE=3 SV=2
Length = 781
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 144/529 (27%), Positives = 230/529 (43%), Gaps = 87/529 (16%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ I + + P++L ++ K D S VR A L KL + + I + ++ LL
Sbjct: 142 LSDINIASLYPIILHSLKKTVIDSSEVVRCQVAMTLLKLFKEQGISIKDDVMPMLKSLLA 201
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHG 120
D P VV AA F L+ +YR C IL + E Q ++I+I + Y
Sbjct: 202 DSEPSVVSAALLLFQKAFAQELQLLHGHYRRYCSILNQLTENAQAIMIDIFIAYA----- 256
Query: 121 LVKESIMSSLLCIESSHSEKDVFDVNVALED--NGIPSRTYDSELVNLVSRSYIEGLGEY 178
KE + ++ SS +E + L D N IP YD E
Sbjct: 257 --KEYLPRPMVRDTSSDAEA------IQLPDSFNQIPFPVYDVEY--------------- 293
Query: 179 LTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238
+ D+ L L LL S N+ V++A + + +S
Sbjct: 294 ------------------------DHDLNLFLSSLKKLLHSPNAMVIVAVSKAFYQLSSP 329
Query: 239 EDVKR--IVKPLLFILRSS---GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQ 293
+ K IV LL + SS K +VL +I V+ + P LF HY+ FF+ SD+
Sbjct: 330 KTFKDSGIVDSLLRLTVSSYICSEIKELVLQSILVYCCSDPSLFRSHYKRFFLMPSDTEN 389
Query: 294 SKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFA--ADTVAAIGLCARKLPKMANTC 351
KL+ILS +V++S+ + E + ++ ++ + + + +CA+ K ++
Sbjct: 390 ISIFKLKILSILVSDSNCKHIVNELK-FVAGTEQSASILVEVSNTLSVCAQISSKWSSQI 448
Query: 352 VEGLLALIRQELLTSDIESGNGEAD--VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS 409
+ LL I S N D V I ++S+I++DP H +++L + L +
Sbjct: 449 ISWLLDRI----------SSNTPIDKEVTASQINVLRSLIQKDPIKHIATVVKLSKMLSN 498
Query: 410 IK-VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL- 467
+P A+ IIW++GEY V PR+ VL+ L F E +LQILN K+L
Sbjct: 499 HDLLPSAKAPIIWLLGEYVQVE---PRICPDVLRRLLPQFSKEHAHVRLQILNLAAKLLS 555
Query: 468 --LCAKGGDMW------TITRLFSYLLELAECDLNYDVRDRARFFKKLF 508
+ + GDM I ++F L+LA+ D YDVRDRAR +F
Sbjct: 556 HDVDSYSGDMEYDIGTSRIGQMFEAALQLAKFDDEYDVRDRARMLASIF 604
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1
Length = 949
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 221/501 (44%), Gaps = 72/501 (14%)
Query: 19 KCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78
K DP+ +R A + +R ++IT + E + L D P V AA A +
Sbjct: 93 KDCEDPNPLIRALAVRTM---GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH 149
Query: 79 PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHS 138
N L VE+ G ++ L + S+ +V + +++L I SH
Sbjct: 150 DINAQL--------------VEDQG---FLDTLKDLISDSNPMVVANRVAALSEIAESHP 192
Query: 139 EKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFT 198
++ D+ + + + +E + ++ LG Y+ + D A+S
Sbjct: 193 SSNLLDLKAQSINKLLTALNECTEWAQIF---ILDCLGNYMPKD-DREAQS--------- 239
Query: 199 SGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLL 249
+ + +P L NSAVVL+A V ++S D +K++ PL+
Sbjct: 240 ----------ICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLV 289
Query: 250 FILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES 309
+L + +YV L NI + + P + + FFV +D K KL+I+ + +++
Sbjct: 290 TLLSAEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQA 349
Query: 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIE 369
+I+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV------ 403
Query: 370 SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV 429
V+ ++I+ IK I ++ P+ +E VI L +LDS+ PEAR +IW+VGEY+
Sbjct: 404 -----NYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSLDEPEARAAMIWIVGEYAER 458
Query: 430 GVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA 489
+L + L F E+ + +LQ+L +K+ L L +L LA
Sbjct: 459 IDNADELLESFLD----GFHDESTQVQLQLLTAIVKLFLKKPT----ETQELVQQVLSLA 510
Query: 490 ECDL-NYDVRDRARFFKKLFS 509
D N D+RDR + +L S
Sbjct: 511 TQDSDNPDLRDRGYIYWRLLS 531
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC-----PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
+D +P VV AA + I N L ++ L L + EW QI +++ L Y
Sbjct: 170 SDSNPMVVANRVAALSEIAESHPSSNLLDLKAQSINKLLTALNECTEWAQIFILDCLGNY 229
Query: 115 V 115
+
Sbjct: 230 M 230
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2
Length = 949
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 130/503 (25%), Positives = 223/503 (44%), Gaps = 72/503 (14%)
Query: 19 KCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78
K DP+ +R A + +R ++IT + E + L D P V AA A +
Sbjct: 93 KDCEDPNPLIRALAVRTM---GCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLH 149
Query: 79 PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHS 138
N L VE+ G ++ L + S+ +V + +++L I SH
Sbjct: 150 DINAQL--------------VEDQG---FLDTLKDLISDSNPMVVANAVAALSEIAESHP 192
Query: 139 EKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFT 198
++ D+N + + + +E + ++ L Y+ + D A+S
Sbjct: 193 SSNLLDLNPQSINKLLTALNECTEWGQIF---ILDCLANYMPKD-DREAQS--------- 239
Query: 199 SGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLL 249
+ + +P L NSAVVL+A V ++S D +K++ PL+
Sbjct: 240 ----------ICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYGTLLKKLAPPLV 289
Query: 250 FILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES 309
+L + +YV L NI + + P + + FFV +D K KL+I+ + +++
Sbjct: 290 TLLSAEPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQA 349
Query: 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIE 369
+I+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV------ 403
Query: 370 SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSV 429
V+ ++I+ IK I ++ P+ +E VI L +LDS+ PEAR +IW+VGEY+
Sbjct: 404 -----NYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSLDEPEARAAMIWIVGEYAER 458
Query: 430 GVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELA 489
+L + L+ F E+ + +LQ+L +K+ L L +L LA
Sbjct: 459 IDNADELLESFLE----GFHDESTQVQLQLLTAIVKLFLKKPT----ETQELVQQVLSLA 510
Query: 490 ECDL-NYDVRDRARFFKKLFSHN 511
D N D+RDR + +L S +
Sbjct: 511 TQDSDNPDLRDRGYIYWRLLSTD 533
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC-----PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
+D +P VV A AA + I N L ++ L L + EWGQI +++ L Y
Sbjct: 170 SDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQIFILDCLANY 229
Query: 115 V 115
+
Sbjct: 230 M 230
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
Length = 943
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 95/319 (29%), Positives = 158/319 (49%), Gaps = 29/319 (9%)
Query: 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW----IMSPKED-----VKRIVKPLLFI 251
K + + + + + +P L NSAVVL+A V ++S D +K++ PL+ +
Sbjct: 232 KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLVTL 291
Query: 252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311
L + +YV L NI + + P + + FFV +D K KL+I+ + ++++I
Sbjct: 292 LSAEPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351
Query: 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371
+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-------- 403
Query: 372 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431
V+ ++I+ IK I ++ P+ +E VI L +LDS+ PEAR +IW+VGEY+
Sbjct: 404 ---NYVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSLDEPEARAAMIWIVGEYAERID 460
Query: 432 KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 491
+L + L+ F E+ + +LQ+L +K+ L L +L LA
Sbjct: 461 NADELLESFLE----GFHDESTQVQLQLLTAIVKLFLKKPT----ETQELVQQVLSLATQ 512
Query: 492 DL-NYDVRDRARFFKKLFS 509
D N D+RDR + +L S
Sbjct: 513 DSDNPDLRDRGYIYWRLLS 531
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDTLKDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC-----PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
+D +P VV A AA + I N L ++ L L + EWGQI +++ L Y
Sbjct: 170 SDSNPMVVANAVAALSEIAESHPSSNLLDLNPQSINKLLTALNECTEWGQIFILDCLANY 229
Query: 115 V 115
+
Sbjct: 230 M 230
>sp|O13939|AP3B_SCHPO AP-3 complex subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl6 PE=1 SV=1
Length = 745
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/400 (26%), Positives = 188/400 (47%), Gaps = 43/400 (10%)
Query: 185 TNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRI 244
T R + L ++ T+ D+K LL+ +S + ++A A + ++P + I
Sbjct: 238 TLVRYARLTLPEPSTPSTHSDLKELLESIKSCFFSLLPSTIIAGARAFYYLAPSNQMHLI 297
Query: 245 VKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSS 304
V+PLL +L + L I P LF H + FF+ +SDS + LK+ ILS
Sbjct: 298 VEPLLQLLLEKPIVRTTTLRYISQIVYKTPELFKNHIKSFFLIASDSDDTCLLKINILSR 357
Query: 305 IVTESSISSVFKEFQDYIRD-PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQEL 363
++ + S + E YI P+ A+ V A+G A MA +C+
Sbjct: 358 LLDAQNSSQILPELLYYINSHPNPSVASTAVKALGDFASANISMAPSCLN---------- 407
Query: 364 LTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMV 423
T + + + ++ ++ S++ +I DP E + L + ++++VP A+ + +W++
Sbjct: 408 -TLLLLLKSHNSLIVTEAASSLRLLIHNDPK--EIYLQYLAATYETLEVPRAKSVTLWLI 464
Query: 424 GEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCA----KGGDMWT-- 477
E+ + IPR++ VL+ F E +E K QIL ++++ + + K D+ +
Sbjct: 465 SEHILI---IPRLVPDVLRIAVKTFADETLEVKYQILELSVRLYVLSHSEEKQNDLESRD 521
Query: 478 --ITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVE 535
++ LF+Y+L L D++YD+RDRARF+K+L S P + +++E
Sbjct: 522 DVVSLLFNYVLSLIHFDMSYDLRDRARFYKELAS------TPSSEFTRR-------IVLE 568
Query: 536 CIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEPLP 575
Q+ + AS R Y G+ S + GYEP+P
Sbjct: 569 SKGNSQKEIIAS-----RDYCIGTASLCLNEDVMGYEPIP 603
Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
M+ IR+ I+ +VL+A+ +C D + VR+ AA A+ K + L S +EE + LL+
Sbjct: 130 MSSIRVPAINGIVLLAIQQCITDTADRVRQSAALAITKCYSL-DPSYKSQLEEHIKTLLS 188
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D SP VV AA F +CP +I Y +C + P + +W +++ ++ L+RY
Sbjct: 189 DNSPIVVPAALFTFEVVCPEKLEIIHPYYHRICTLFPQMNDWDKVVALKTLVRY 242
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD
PE=1 SV=2
Length = 893
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 154/314 (49%), Gaps = 31/314 (9%)
Query: 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-----DV-----KRIVKPLLFILRSSGAS 258
+++ +P L N AVVL+A V I+ E DV K++ PL+ +L +
Sbjct: 241 IVERVTPRLQHANCAVVLSA--VKMILQQMELITSTDVIRNLCKKMAPPLVTLLSAEPEI 298
Query: 259 KYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEF 318
+YV L NI + + P + + FF +D K KLEI+ + ++ +I V EF
Sbjct: 299 QYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 358
Query: 319 QDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVL 378
++Y + D F V AIG CA KL + A C+ LL LI+ ++ V+
Sbjct: 359 KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV-----------NYVV 407
Query: 379 IQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLT 438
++II IK I ++ P+ +E +I L SLD++ PEA+ +IW++GEY+ +L
Sbjct: 408 QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLE 467
Query: 439 TVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG-GDMWTITRLFSYLLELAECDLNYDV 497
+ L+ F E + +LQ+L T+K+ L G I + + E D N D+
Sbjct: 468 SFLE----NFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN--ATVETD-NPDL 520
Query: 498 RDRARFFKKLFSHN 511
RDRA + +L S +
Sbjct: 521 RDRAYIYWRLLSTD 534
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITS-AIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KL ++ E + E + L+
Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171
Query: 60 NDRSPGVVGAAAAAFASICPNN----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
+D +P VV A AA A I N+ F + L L + EWGQ+ +++ L RY
Sbjct: 172 SDNNPMVVANAVAALAEIQENSTSPIFEINSTILTKLLTALNECTEWGQVFILDALSRY 230
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD
PE=1 SV=1
Length = 894
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 154/314 (49%), Gaps = 31/314 (9%)
Query: 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-----DV-----KRIVKPLLFILRSSGAS 258
+++ +P L N AVVL+A V I+ E DV K++ PL+ +L +
Sbjct: 241 IVERVTPRLQHANCAVVLSA--VKMILQQMELITSTDVIRNLCKKMAPPLVTLLSAEPEI 298
Query: 259 KYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEF 318
+YV L NI + + P + + FF +D K KLEI+ + ++ +I V EF
Sbjct: 299 QYVALRNINLIVQKRPTILAHEIKVFFCKYNDPIYVKMEKLEIMIKLASDRNIDQVLLEF 358
Query: 319 QDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVL 378
++Y + D F V AIG CA KL + A C+ LL LI+ ++ V+
Sbjct: 359 KEYATEVDVDFVRKAVRAIGRCAIKLERAAERCISVLLELIKIKV-----------NYVV 407
Query: 379 IQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLT 438
++II IK I ++ P+ +E +I L SLD++ PEA+ +IW++GEY+ +L
Sbjct: 408 QEAIIVIKDIFRRYPNTYESIIATLCESLDTLDEPEAKASMIWIIGEYAERIDNADELLE 467
Query: 439 TVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG-GDMWTITRLFSYLLELAECDLNYDV 497
+ L+ F E + +LQ+L T+K+ L G I + + E D N D+
Sbjct: 468 SFLE----NFPEEPAQVQLQLLTATVKLFLKKPTEGPQQMIQVVLNN--ATVETD-NPDL 520
Query: 498 RDRARFFKKLFSHN 511
RDRA + +L S +
Sbjct: 521 RDRAYIYWRLLSTD 534
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITS-AIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KL ++ E + E + L+
Sbjct: 112 MGCIRVDKITEYLCDPLQKCLKDDDPYVRKTAAICVAKLFDINAELVEDRGFLEALKDLI 171
Query: 60 NDRSPGVVGAAAAAFASICPNN----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115
+D +P VV A AA A I N+ F + L L + EWGQ+ +++ L +Y
Sbjct: 172 SDNNPMVVANAVAALAEIQENSSSPIFEINSTTLTKLLTALNECTEWGQVFILDALSKYK 231
Query: 116 VA 117
A
Sbjct: 232 AA 233
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2
Length = 937
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFI 251
K + + + + + +P L NSAVVL+A V + PKE +K++ PL+ +
Sbjct: 232 KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKESDYYNMLLKKLAPPLVTL 291
Query: 252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311
L +YV L NI + + P + + FFV +D K KL+I+ + ++++I
Sbjct: 292 LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351
Query: 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371
+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-------- 403
Query: 372 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431
V+ ++I+ I+ I ++ P+ +E +I L +LDS+ P+AR +IW+VGEY+
Sbjct: 404 ---NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460
Query: 432 KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 491
+L + L+ F E+ + +L +L +K+ L L +L LA
Sbjct: 461 NADELLESFLE----GFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQ 512
Query: 492 DL-NYDVRDRARFFKKLFS 509
D N D+RDR + +L S
Sbjct: 513 DSDNPDLRDRGYIYWRLLS 531
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC---PNN--FTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D +P VV A AA + I PN+ L +N L L + EWGQI +++ L Y
Sbjct: 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1
Length = 951
Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 157/318 (49%), Gaps = 27/318 (8%)
Query: 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFI 251
K + + + + + +P L NSAVVL+A V + PKE +K++ PL+ +
Sbjct: 232 KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKESDYYNMLLKKLAPPLVTL 291
Query: 252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311
L +YV L NI + + P + + FFV +D K KL+I+ + ++++I
Sbjct: 292 LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351
Query: 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371
+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-------- 403
Query: 372 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431
V+ ++I+ I+ I ++ P+ +E +I L +LDS+ P+AR +IW+VGEY+
Sbjct: 404 ---NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460
Query: 432 KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 491
+L + L+ F E+ + +L +L +K+ L + ++ S L +
Sbjct: 461 NADELLESFLE----GFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLS--LATQDS 514
Query: 492 DLNYDVRDRARFFKKLFS 509
D N D+RDR + +L S
Sbjct: 515 D-NPDLRDRGYIYWRLLS 531
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC---PNN--FTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D +P VV A AA + I PN+ L +N L L + EWGQI +++ L Y
Sbjct: 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFI 251
K + + + + + +P L NSAVVL+A V + PK+ +K++ PL+ +
Sbjct: 232 KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL 291
Query: 252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311
L +YV L NI + + P + + FFV +D K KL+I+ + ++++I
Sbjct: 292 LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351
Query: 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371
+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-------- 403
Query: 372 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431
V+ ++I+ I+ I ++ P+ +E +I L +LDS+ P+AR +IW+VGEY+
Sbjct: 404 ---NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460
Query: 432 KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 491
+L + L+ F E+ + +L +L +K+ L L +L LA
Sbjct: 461 NADELLESFLE----GFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQ 512
Query: 492 DL-NYDVRDRARFFKKLFS 509
D N D+RDR + +L S
Sbjct: 513 DSDNPDLRDRGYIYWRLLS 531
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC---PNN--FTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D +P VV A AA + I PN+ L +N L L + EWGQI +++ L Y
Sbjct: 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1
Length = 937
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFI 251
K + + + + + +P L NSAVVL+A V + PK+ +K++ PL+ +
Sbjct: 232 KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL 291
Query: 252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311
L +YV L NI + + P + + FFV +D K KL+I+ + ++++I
Sbjct: 292 LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351
Query: 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371
+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-------- 403
Query: 372 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431
V+ ++I+ I+ I ++ P+ +E +I L +LDS+ P+AR +IW+VGEY+
Sbjct: 404 ---NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460
Query: 432 KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 491
+L + L+ F E+ + +L +L +K+ L L +L LA
Sbjct: 461 NADELLESFLE----GFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQ 512
Query: 492 DL-NYDVRDRARFFKKLFS 509
D N D+RDR + +L S
Sbjct: 513 DSDNPDLRDRGYIYWRLLS 531
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC---PNN--FTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D +P VV A AA + I PN+ L +N L L + EWGQI +++ L Y
Sbjct: 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1
Length = 937
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV---HWIMSPKED------VKRIVKPLLFI 251
K + + + + + +P L NSAVVL+A V + PK+ +K++ PL+ +
Sbjct: 232 KDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL 291
Query: 252 LRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311
L +YV L NI + + P + + FFV +D K KL+I+ + ++++I
Sbjct: 292 LSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351
Query: 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371
+ V E ++Y + D F V AIG CA K+ + A CV LL LI+ ++
Sbjct: 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKV-------- 403
Query: 372 NGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431
V+ ++I+ I+ I ++ P+ +E +I L +LDS+ P+AR +IW+VGEY+
Sbjct: 404 ---NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAERID 460
Query: 432 KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC 491
+L + L+ F E+ + +L +L +K+ L L +L LA
Sbjct: 461 NADELLESFLE----GFHDESTQVQLTLLTAIVKLFLKKPS----ETQELVQQVLSLATQ 512
Query: 492 DL-NYDVRDRARFFKKLFS 509
D N D+RDR + +L S
Sbjct: 513 DSDNPDLRDRGYIYWRLLS 531
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 6/120 (5%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-SAIEEIVGILL 59
M IR+ I+ + + KC +D +VRK AA + KLH++ + + + + L+
Sbjct: 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLI 169
Query: 60 NDRSPGVVGAAAAAFASIC---PNN--FTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D +P VV A AA + I PN+ L +N L L + EWGQI +++ L Y
Sbjct: 170 ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229
>sp|Q54X82|AP1B_DICDI AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3
SV=1
Length = 942
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 150/305 (49%), Gaps = 26/305 (8%)
Query: 213 TSPLLWSHNSAVVLAAAGV--HWIMS-PKEDV-----KRIVKPLLFILRSSGASKYVVLC 264
+P L NSAVVL+A V ++ S DV K++ PL+ +L +++ L
Sbjct: 243 VAPRLQHANSAVVLSAVKVLMKYMNSIGNNDVIRLFCKKMAPPLVTLLSKEPEIQFLGLR 302
Query: 265 NIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRD 324
NI + + P + + FF +D K KLEI+ + E +I V EF++Y +
Sbjct: 303 NINLIVQKRPEILQYEMKVFFCKYNDPIYVKMEKLEIMIMLANEKNIEEVLLEFKEYATE 362
Query: 325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384
D F V AIG CA K+ + + C++ LL LI+ ++ V+ ++II
Sbjct: 363 IDVEFVRKAVRAIGRCAIKIDRASERCIQVLLDLIQTKV-----------NYVVQEAIIV 411
Query: 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444
IK I ++ P+ +E +I L +L+S+ PEA+ +IW++GEY+ +L + L+
Sbjct: 412 IKDIFRKYPNKYEGIIATLCANLESLDEPEAKASMIWIIGEYAERIDNAHELLNSFLE-- 469
Query: 445 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFF 504
FK E + +LQ+L + +K+ L + + + L E D N D+RDR +
Sbjct: 470 --GFKDENSQVQLQLLTSIVKLFLKRPKDAQQMVQTVLN--LSTQESD-NPDLRDRGFVY 524
Query: 505 KKLFS 509
+L S
Sbjct: 525 WRLLS 529
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI-TSAIEEIVGILL 59
M IR+ I+ + + +D +VRK AA + KL+++ E + I+ LL
Sbjct: 110 MGCIRVDNITEHLCEPLRHALKDQDPYVRKTAAVCVAKLYDVNPELVENQGFLNILNDLL 169
Query: 60 NDRSPGVVGAAAAAFASI----CPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D +P VV A A+ I F + N L L + EWGQ+ ++ L +Y
Sbjct: 170 GDSNPMVVANAVASLTEIDEVSKKEVFRIHSGNLNKLLAALNECTEWGQVFILNSLCKY 228
>sp|O43005|AP2B_SCHPO AP-2 complex subunit beta OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=apl1 PE=3 SV=1
Length = 677
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 148/307 (48%), Gaps = 27/307 (8%)
Query: 214 SPLLWSHNSAVVLAAAGVHWIMSP--------KEDVKRIVKPLLFIL-RSSGASKYVVLC 264
SP L N+AV + A V ++ KE + PL+ +L R S A++YV+L
Sbjct: 245 SPWLQHGNAAVCMGAVKVILYLTNYMKDDNRVKEYFMKTQPPLVTLLARKSSATQYVILR 304
Query: 265 NIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRD 324
NIQ+ + P +F F+ + D K KL+IL+ I ++ + EF +Y +
Sbjct: 305 NIQIILEQCPEMFANDIHFFYCNFDDPIYVKLEKLDILTKIADIHNLDQILPEFVEYASE 364
Query: 325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384
D +V IG A K+ + N C++ L+ L+ ++ V+ +++I
Sbjct: 365 IDVELVRKSVKCIGYLAIKIEERKNDCIDSLIELMNTKVTY-----------VIQEAVIV 413
Query: 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYL 444
I+ I+++ P ++ ++ L+ +LDS+ P+A+ +IW++G+Y+ +I +T + YL
Sbjct: 414 IRDILRKYPGSYKSLVPILYENLDSLDEPDAKSAVIWILGQYAE---EIEDSITLLNDYL 470
Query: 445 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFF 504
F E +E +L +L IKV L +T + + + + D+RDR +
Sbjct: 471 KGFF-DEPLEIQLTLLTAVIKVFLKKPTAAADMVTNVLQWCTDEVN---DPDLRDRGIIY 526
Query: 505 KKLFSHN 511
++ S N
Sbjct: 527 SRMLSAN 533
>sp|O43079|AP1B1_SCHPO AP-1 complex subunit beta-1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=apl2 PE=1 SV=1
Length = 683
Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 121/547 (22%), Positives = 228/547 (41%), Gaps = 70/547 (12%)
Query: 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAA 71
L ++AV +D + A A+ + +R +I + + + L D P V AAA
Sbjct: 87 LCILAVNTFVKDSEEYNPTLRALAIRTMGCIRVNKIIGYLADPLRKALKDEHPYVRKAAA 146
Query: 72 AAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLL 131
+C + R Y C IE L V + +V + + SL
Sbjct: 147 -----VCVVKMYDLDREY---C---------ASNGFIEQLQALVSDPNPVVVANAVRSLA 189
Query: 132 CIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSD 191
I EK F+V + D +V+ S G +S R+SD
Sbjct: 190 EIHDQDPEKGYFNVVYTMTDRL------------MVALSECNEWGRITILNSLARFRTSD 237
Query: 192 LNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDV-----KRI 244
+ A + + P NS VVL+A V + P D K++
Sbjct: 238 IKEAEYVCERV-----------VPQFQHANSGVVLSAVKVIMVHIPLFSSDFTDFLYKKM 286
Query: 245 VKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSS 304
PLL +L + +YV L NI + + P +F FF +D K KL+I++
Sbjct: 287 APPLLTLLSTDSEIQYVALRNINLILQKRPSIFDVKTRVFFCKYNDPLYIKMEKLKIITM 346
Query: 305 IVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELL 364
+ + +I+ E + Y+ + + F T+ +G A K+P + N C+ L E+
Sbjct: 347 LACDENINETISELRAYVSEVELEFVKQTIKCLGDVALKVPSVINDCISIFL-----EIY 401
Query: 365 TSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVG 424
+I E V+++ +++++ P + ++ L R ++ + P AR + W++G
Sbjct: 402 ELNISYMVQEVTVVME------TVLRKYPQKIDLLLPYLSRVIEELGDPRARSSMAWILG 455
Query: 425 EYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV-LLCAKGGDMWTITRLFS 483
E+S V ++L+ ++ +A E ++ +L +L +K+ L+ KG D + ++ +
Sbjct: 456 EFSHVIPTSSKLLSEMISTMA----DEDLQIQLALLTAVVKLSLMNGKGNDEELVQKVLN 511
Query: 484 YLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPE----ETNALQENKDLPLVLVECIFR 539
Y + + N D+RDRA +++L + + + E ++ N +LP L++ +
Sbjct: 512 YAINQSS---NQDLRDRAFAYQRLLTPENVRKAQKIVCCEKPSVSYNNNLPEALLDALLC 568
Query: 540 KQENLAA 546
+ LA+
Sbjct: 569 EITTLAS 575
>sp|P46682|AP3B_YEAST AP-3 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL6 PE=1 SV=2
Length = 809
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 157/331 (47%), Gaps = 37/331 (11%)
Query: 205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVK--RIVKPLL--FILRSSGASKY 260
D+ L LQ + L++S N V+L+ + ++ +K + ++ L+ + + +K
Sbjct: 298 DLDLFLQSLNCLIYSSNPTVILSCCNALYQLASPLQMKNTKFIEALVRTVTMTENQGNKE 357
Query: 261 VVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD 320
++L I + LF+P+ + F+V D + K++ILS+++ ES++ +FKE +
Sbjct: 358 MLLQAIHFLSILDQTLFLPYTKKFYVFPKDPIVASIWKIQILSTLINESNVKEIFKELKY 417
Query: 321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ 380
Y+ F + V + +++ + ++ + L +ES N A VL
Sbjct: 418 YV--ASAHFPENVVIMAVKSLSRCGQLSTSWESHVM-----KWLIDHMESHNLSASVLDA 470
Query: 381 SIISIKSIIKQDPSCHEKVIIQL--FRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLT 438
+ I+ +++++P+ H ++I +L ++ + AR I+W+ GE +S+ KI
Sbjct: 471 YVNVIRMLVQKNPTKHLRIIFKLADLLTVQTSLADNARAGIVWLFGEIASIEFKI---CP 527
Query: 439 TVLKYLAWCFKSEAVETKLQILNTTIKVL---------LCAKGGDMWT------------ 477
VL+ L F +E ET+ QIL + K+L G +
Sbjct: 528 DVLRRLIQNFSNEGPETRCQILVLSAKLLSYDIDNFKQAQVTGSEENNQNPPYYDFSGSR 587
Query: 478 ITRLFSYLLELAECDLNYDVRDRARFFKKLF 508
I+++++ +L LA+ D +D+RDRAR LF
Sbjct: 588 ISQMYNAVLYLAKYDDEFDIRDRARMISSLF 618
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN 60
++ +++ ++P++L V K DPS VR A A+ KL+ + + + +I+ L+
Sbjct: 142 LSDMKMSSLAPIILHTVKKLVTDPSAMVRGEVALAIIKLYRAGKNDYHEELLDILKELMA 201
Query: 61 DRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRY 114
D P V+ A A+ ++ L+ ++R C+I+ ++ W Q LIE+L++Y
Sbjct: 202 DTDPKVISCAVLAYKECYADHLELLHGHFRRYCRIIKQLDSWSQSYLIELLIKY 255
>sp|Q9WV76|AP4B1_MOUSE AP-4 complex subunit beta-1 OS=Mus musculus GN=Ap4b1 PE=2 SV=2
Length = 738
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 145/304 (47%), Gaps = 37/304 (12%)
Query: 217 LWSHNSAVVLAAAGVHWIMSPK------EDVKRIVKPLLFILRSSGASK-YVVLCNIQVF 269
L S ++ VV+ A + I++ K + + R+ PLL S + LC+++
Sbjct: 244 LKSSSTGVVMGATKLFLILAKKFPHVQTDVLVRVKGPLLAACSSESRELCFAALCHVRQV 303
Query: 270 AKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRF 329
+LP F HY+ FF S S+ + K K+E+L +V + ++ V +E + Y D F
Sbjct: 304 LHSLPGHFSSHYKKFFCSYSEPHYIKLQKVEVLCELVNDENVQQVLEELRGYCTDVAADF 363
Query: 330 AADTVAAIGLCARKLPKMANTCVEGLLAL--IRQELLTSDIESGNGEADVLIQSIISIKS 387
A + AIG A+ + CV+ L L +RQE +T+ V++Q + +
Sbjct: 364 AQAAIFAIGSIAK---TYTDQCVQILTELLGLRQEHITT----------VVVQ---TFRD 407
Query: 388 IIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC 447
++ P C E V L ++I+ E + +IW++G + G KIP VL+
Sbjct: 408 LVWLCPQCTEAVCQALPGCEENIQDSEGKQALIWLLGVH---GEKIPNA-PYVLEDFVDN 463
Query: 448 FKSEAV-ETKLQILNTTIKVLLC--AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFF 504
KSE K+++L ++++L A+ DM + RL Y +E E D+ VRDR F+
Sbjct: 464 VKSETFPAVKMELLTALMRLVLSRPAECQDM--LGRLLHYCIE-EEKDMA--VRDRGLFY 518
Query: 505 KKLF 508
+L
Sbjct: 519 YRLL 522
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE-EITSAIEEIVGILL 59
M G++ ++ P+V RD + +VR+ A K+H L + E+ A+ + LL
Sbjct: 114 MPGVQEYIQQPVV-----NGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLL 168
Query: 60 NDRSPGVVGAAAAAFASICPNNFTLIGRN--YRNLCQILPDVEEWGQILLIEILLRY 114
D+ P VV + I ++ +L + +++WGQ ++ LLRY
Sbjct: 169 RDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRY 225
>sp|Q9LDK9|APBLA_ARATH Beta-adaptin-like protein A OS=Arabidopsis thaliana GN=BETAA-AD
PE=1 SV=1
Length = 841
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 138/300 (46%), Gaps = 27/300 (9%)
Query: 221 NSAVVLAAAGVHWIMS------PKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL 273
N AVVLA V ++ ++ +RI PLL ++ S S Y +L ++ +
Sbjct: 274 NGAVVLATVKVFLQLTLSMTDVHQQVYERIKSPLLTLVSSGSPEQSYAILSHLHLLVVRA 333
Query: 274 PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADT 333
P +F Y+ F+ ++ K LKLE+L+++ ES+ + E +Y + D A ++
Sbjct: 334 PFIFAADYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIAIARES 393
Query: 334 VAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393
+ A+G A + + N V+ LL + E + V ++++ +K ++++ P
Sbjct: 394 IRAVGKIALQQYDV-NAIVDRLLQFLEME-----------KDYVTAETLVLVKDLLRKYP 441
Query: 394 S-CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEA 452
H+ + + S +I+ P+A+ +IWM+GEY+ P +L +++ W + +
Sbjct: 442 QWSHDCISVVGGISSKNIQEPKAKAALIWMLGEYAQDMSDAPYVLENLIE--NWE-EEHS 498
Query: 453 VETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNL 512
E +L +L +K + L D + DV DRA F+ ++ +++
Sbjct: 499 AEVRLHLLTAAMKCFFKRAP----ETQKALGTALAAGIADFHQDVHDRALFYYRVLQYDV 554
>sp|Q9Y6B7|AP4B1_HUMAN AP-4 complex subunit beta-1 OS=Homo sapiens GN=AP4B1 PE=1 SV=2
Length = 739
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/337 (27%), Positives = 154/337 (45%), Gaps = 37/337 (10%)
Query: 184 DTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP-----K 238
D ++ LN ++ +++ +L L S + VV+ A + I++ +
Sbjct: 211 DQWGQAEVLNFLLRYQPRSEEELFDILNLLDSFLKSSSPGVVMGATKLFLILAKMFPHVQ 270
Query: 239 EDV-KRIVKPLLFILRSSGASK-YVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKA 296
DV R+ PLL S +V LC+++ +LP F HY+ FF S S+ + K
Sbjct: 271 TDVLVRVKGPLLAACSSESRELCFVALCHVRQILHSLPGHFSSHYKKFFCSYSEPHYIKL 330
Query: 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLL 356
K+E+L +V + ++ V +E + Y D FA + AIG AR + CV+ L
Sbjct: 331 QKVEVLCELVNDENVQQVLEELRGYCTDVSADFAQAAIFAIGGIAR---TYTDQCVQILT 387
Query: 357 AL--IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPE 414
L +RQE +T+ V++Q + + ++ P C E V L ++I+ E
Sbjct: 388 ELLGLRQEHITT----------VVVQ---TFRDLVWLCPQCTEAVCQALPGCEENIQDSE 434
Query: 415 ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE---AVETKLQILNTTIKVLLCAK 471
+ +IW++G + G +IP VL+ KSE AV+ +L + + A+
Sbjct: 435 GKQALIWLLGVH---GERIPNA-PYVLEDFVENVKSETFPAVKMELLTALLRLFLSRPAE 490
Query: 472 GGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508
DM + RL Y +E E D+ VRDR F+ +L
Sbjct: 491 CQDM--LGRLLYYCIE-EEKDMA--VRDRGLFYYRLL 522
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE-EITSAIEEIVGILL 59
M G++ ++ P++ RD + +VR+ A K+H L + E+ A+ + LL
Sbjct: 114 MPGVQEYIQQPIL-----NGLRDKASYVRRVAVLGCAKMHNLHGDSEVDGALVNELYSLL 168
Query: 60 NDRSPGVVGAAAAAFASICPNNFTLIGRN--YRNLCQILPDVEEWGQILLIEILLRY 114
D+ P VV + I ++ +L + +++WGQ ++ LLRY
Sbjct: 169 RDQDPIVVVNCLRSLEEILKQEGGVVINKPIAHHLLNRMSKLDQWGQAEVLNFLLRY 225
>sp|P27351|AP2B_YEAST AP-2 complex subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=APL1 PE=1 SV=2
Length = 700
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 115/235 (48%), Gaps = 20/235 (8%)
Query: 284 FFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARK 343
FF+ +D K KLE L + + ++ + +E + Y D D + + +V AIG A K
Sbjct: 332 FFIEYNDPIYIKDTKLECLYLLANKETLPRILEELEQYATDIDIQMSRKSVRAIGNLAVK 391
Query: 344 LPK-MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISI-KSIIKQDPSCHEKVII 401
L + + CV LL L +E G D ++Q IIS+ ++I+++ P+ + +
Sbjct: 392 LDEDSVHDCVAVLLDL---------LEFG---VDYVVQEIISVFRNILRKYPNNFKANVT 439
Query: 402 QLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILN 461
+L + + ++ PE++ +IW++ +YS V IP L + + F SE +E + ILN
Sbjct: 440 ELVKHTEVVQEPESKNAMIWIITQYSDV---IPNYLELFRVFSSNMF-SETLEVQFSILN 495
Query: 462 TTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQV 516
+ IK + + + + L + + N D+RD+ + +L S S++
Sbjct: 496 SAIKFFIRSPTKETEELC--MDLLKGCIDHENNPDLRDKTLMYWRLLSLTKTSRI 548
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 22 RDPSVFVRKCAANALPKLHELRQEEI---TSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78
+ P V + A AL L E+ E + +S + +IV SP V+ AA SI
Sbjct: 140 KSPPEQVTRTAIYALLDLDEIDHERVLGLSSILHDIVKA--QSSSPEVIVAALHTLYSIH 197
Query: 79 PNN-----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGL 121
N F + ++ ++LP++ EW + ++E+L VV H L
Sbjct: 198 EKNANMEPFRIPLELAFDMLELLPELNEWNKATVLEVLTTSVVPQHYL 245
>sp|Q54R84|AP4B_DICDI AP-4 complex subunit beta OS=Dictyostelium discoideum GN=ap4b1 PE=3
SV=1
Length = 838
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 117/261 (44%), Gaps = 26/261 (9%)
Query: 242 KRIVKPLLFILRSSGASK--YVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKL 299
+RI +PL+ ++ SS +++ + +L +I + P LF +Y+ F+ D K LK+
Sbjct: 286 ERIKEPLITLMESSESNETSFTILHHIHLLMSRSPRLFNRYYKHFYCKFDDPLYIKTLKV 345
Query: 300 EILSSIVTES----SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANT--CVE 353
++L I + SI + +E +Y+ + D ++ AI + A+K E
Sbjct: 346 QVLKEIASNQTFIESIDEILQELSEYVYEGDHSLCKQSINAITVIAQKHKNTQEKYPIDE 405
Query: 354 GLLALIRQELLT-SDIESGNGEADVLIQS------IISIKSIIKQDPSCHEKVIIQLFRS 406
+L I L+ S G G+ ++ I +IS+K ++ P + V+ + +
Sbjct: 406 SVLEKIFLPYLSVSSNLGGAGDDNISINEGILSFILISLKDFLRVFPKHLKTVLPYINEN 465
Query: 407 LDSIKV-------PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQI 459
L I P A ++WM+GE + V P ++ ++ F + K Q+
Sbjct: 466 LIGIGSVSNYTLPPSANESVLWMLGESPNSQVNSPYIIE---EFFNEKFDQQPTFVKTQL 522
Query: 460 LNTTIKVLLCAKGGDMWTITR 480
L T++KV + G+M I +
Sbjct: 523 LTTSLKVFF-DRPGEMLPILK 542
Score = 40.4 bits (93), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 15 VAVGKCARDPSVFVRKCAANALPKLHELRQE--EITSAIEEIVGILLNDRSPGVVGAAAA 72
+ + + D S +VRK A L KL+ L +E ++ I +I +++ D+ P V+ A +
Sbjct: 137 IEINRSLTDFSGYVRKTALLGLAKLYHLSKEAFDLDIIIPKIFDMIM-DQDPQVIVNAVS 195
Query: 73 AFASICPN---NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVAS 118
I P F L+ ++L + EW Q +++E L RY +S
Sbjct: 196 TLNEIKPGWSFTFDLV----QHLMIKFKEFNEWSQCIILECLSRYTPSS 240
>sp|P36000|AP1B1_YEAST AP-1 complex subunit beta-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APL2 PE=1 SV=1
Length = 726
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/335 (20%), Positives = 142/335 (42%), Gaps = 55/335 (16%)
Query: 221 NSAVVLAAAGVHWIMSPKED-------VKRIVKPLLFILRSSGASKYVVLCNIQVFAKAL 273
N AVVLA V P+ + +KR+ + ++ + +YV L NI++ +
Sbjct: 266 NPAVVLATIKVIVRNLPQIEYSSNSLIMKRLSSAFVSLMSTPPEMQYVALKNIRIILEKY 325
Query: 274 PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS---VFKEFQDYIRDPDRRFA 330
P L F+V +D K K++IL +V S++ + E ++Y + + F
Sbjct: 326 PELLTKELRIFYVKFNDPLYVKLEKIDILVRLVDPSNLKQCTLLLTELKEYAMEYEPEFV 385
Query: 331 ADTVAAIGLCARKLPK--MANTCVEGLLALI-RQELLTSDIESGNGEADVLIQSIISIKS 387
+ + A+ K + + ++ LL L+ RQ+ + D IS+
Sbjct: 386 SRAIQALSQLGIKYAQESFVSKVLDILLELLERQDTIKDD-------------CCISLCD 432
Query: 388 IIKQDPSCHEKVIIQLFRSLDSIKVPE-------ARVMIIWMVGEYSSVGVKIPRMLTTV 440
+++ P ++K+ Q+ ++ PE A+ +W++G++ + + +
Sbjct: 433 LLRHCPG-NDKMAKQVCAVFNTWSNPEVLLQSDIAKCNYVWLLGQHPNNFSDLESKINIF 491
Query: 441 LKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLN-YDVRD 499
++ F E T++ +L T +++ G + +LELA + DVRD
Sbjct: 492 IEN----FVQEEALTQMSLLMTIVRLHATLTGS-------MLQSVLELATQQTHELDVRD 540
Query: 500 RARFFKKLFS--------HNLC-SQVPEETNALQE 525
A + + S ++LC +++P +N L++
Sbjct: 541 MAMMYWRCLSMPNNESLVNDLCQNKLPMISNTLEK 575
>sp|Q9UUF7|COPB_SCHPO Coatomer subunit beta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sec26 PE=3 SV=1
Length = 940
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 24/151 (15%)
Query: 285 FVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYI--------RDPDRRFAADTVAA 336
F+SSSD + + I+ +V+ ++ + FQ + +D RR A A
Sbjct: 322 FLSSSD-FDVCEKAISIIMGLVSSRNVEDILNHFQKELTKSNGETEKDDGRRRA--LTKA 378
Query: 337 IGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS-IKSIIKQDPSC 395
I CA P A T ++ LL+ I SD +S + S++S IK ++++ P
Sbjct: 379 IHSCAINFPHTAATAIQYLLSHI------SDFQSKSA------SSVLSFIKEVMEKFPDL 426
Query: 396 HEKVIIQLFRSLDSIKVPEARVMIIWMVGEY 426
I +L SL ++ + +IW+ GEY
Sbjct: 427 RSSNITKLLLSLKELRAGKIFRGVIWIAGEY 457
>sp|Q54HL0|COPG_DICDI Coatomer subunit gamma OS=Dictyostelium discoideum GN=copG PE=1
SV=1
Length = 898
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 118/284 (41%), Gaps = 32/284 (11%)
Query: 259 KYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKA-LKLEILSSIVTESSISSVFKE 317
++ + + A+ P +P D +D+ +S A L + L + ES++ + K+
Sbjct: 301 RFAAVRTLNKLAQTNPTAVIPCNLDMENLITDTNRSIATLAITTLLKVGNESNVERLIKQ 360
Query: 318 FQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV 377
+++ D + F V AI ++K PK + L ++R E G +
Sbjct: 361 IANFLGDINDEFKIVVVDAITSLSQKFPKKYKHLIIFLNKILRDE----------GTLQL 410
Query: 378 LIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRML 437
++ +I +++ P E + +L ++ P+ V I+ ++G+ +
Sbjct: 411 KQATLDAILTVVNNIPESKEIALTELCDYIEDCDFPDLSVQILHLIGQEGP-------LT 463
Query: 438 TTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYD- 496
++ +Y+ + + ++ + V AK G ++ + +L L C L+ D
Sbjct: 464 SSPAQYMRYIYNRVLLDGGII---RAAAVTSIAKFGLLYEPMKEKVVIL-LQRCLLDEDD 519
Query: 497 -VRDRARFFKKLFSHN--------LCSQVPEETNALQENKDLPL 531
VRDRA + KLF N L VP N LQ++ +L L
Sbjct: 520 EVRDRATLYLKLFKENDVRYLNKVLMDDVPVPLNNLQKSLELYL 563
>sp|Q9SV21|COPB1_ARATH Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1
SV=2
Length = 948
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 334 VAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393
+ AI CA K P++A+T V L+ + G+ + ++ ++ II+ +P
Sbjct: 379 IQAIHACAVKFPEVASTVVHLLMDFL-----------GDSNVASALDVVVFVREIIETNP 427
Query: 394 SCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEY 426
+I +L + I+ + +W++GEY
Sbjct: 428 KLRVSIITRLLDTFYQIRAGKVCPCALWIIGEY 460
>sp|Q9SV20|COPB2_ARATH Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=2
SV=2
Length = 948
Score = 37.7 bits (86), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 334 VAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393
+ AI CA K P++A+T V L+ + G+ + ++ ++ II+ +P
Sbjct: 379 IQAIHACAVKFPEVASTVVHLLMDFL-----------GDSNVASALDVVVFVREIIETNP 427
Query: 394 SCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEY 426
+I +L + I+ + +W++GEY
Sbjct: 428 KLRVSIITRLLDTFYQIRAGKVCPCALWIIGEY 460
>sp|P41810|COPB_YEAST Coatomer subunit beta OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC26 PE=1 SV=2
Length = 973
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 293 QSKAL--KLEILSSIVTESSISSVFKEFQDYIRDPDR----RFAADTVAAIGLCARKLPK 346
+SKAL +++ +S E + + KE Q + +PD+ ++ + I A +
Sbjct: 338 RSKALDISMDLATSRNAEDVVQLLKKELQTTVNNPDQDKAMQYRQLLIKTIRTVAVNFVE 397
Query: 347 MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS-IKSIIKQDPSCHEKVIIQLFR 405
MA + V LL I D+ S V II+ IK +I++ P ++ + +
Sbjct: 398 MAASVVSLLLDFI------GDLNS------VAASGIIAFIKEVIEKYPQLRANILENMVQ 445
Query: 406 SLDSIKVPEARVMIIWMVGEYS 427
+LD ++ +A +W++GEY+
Sbjct: 446 TLDKVRSAKAYRGALWIMGEYA 467
>sp|Q9ZUI6|AP1G2_ARATH AP-1 complex subunit gamma-2 OS=Arabidopsis thaliana GN=At1g60070
PE=2 SV=2
Length = 862
Score = 37.0 bits (84), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 288 SSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM 347
S S Q +AL+L L +V E+++ + KE +Y+ ++ F D A I K
Sbjct: 361 SDASIQKRALELIYL--LVNENNVKPLAKELIEYLEVSEQDFKGDLTAKICSIVEKFAPE 418
Query: 348 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 407
++ +L ++ E+G + + ++I +I P H + L+R+L
Sbjct: 419 KIWYIDQMLKVLS--------EAGTYVKEDVWHALI---VVITNAPDLHGYTVRALYRAL 467
Query: 408 DSIKVPEARVMI-IWMVGEYSSVGVKIPRML 437
+ E V + IW +GEY+ + V ML
Sbjct: 468 HTSFEQETLVRVAIWCIGEYADLLVNNAGML 498
>sp|Q23924|COPB_DICDI Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2
Length = 912
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 16/118 (13%)
Query: 379 IQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLT 438
+ +I ++ +++ PS E +I +L +L SIKV + + +W++ EY + + +T
Sbjct: 419 VDVVIFLREVVETYPSLRELIIKKLIENLSSIKVSKVYRVAVWVIAEYVTCLEDLQYAMT 478
Query: 439 TVLKYLAWCFKSEAVE-------TKLQILNTTIKVLLCAKGGDMW-------TITRLF 482
++ L K + E K++I +I+ L+ GD + ++T+LF
Sbjct: 479 SITNDLEELLKPKQTEEVILETKAKVKIEKVSIQKLIA--DGDWYLASCISSSLTKLF 534
>sp|Q84K16|AP1G1_ARATH AP-1 complex subunit gamma-1 OS=Arabidopsis thaliana GN=GAMMA-ADR
PE=1 SV=1
Length = 876
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 299 LEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLAL 358
LE+++ +V E++++ + KE DY+ D F D A I K ++ +L +
Sbjct: 370 LELVTLLVNENNVTQLTKELIDYLEISDEDFKEDLSAKICFIVEKFSPEKLWYIDQMLKV 429
Query: 359 IRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVM 418
+ E+G D + ++I +I H + L++S+ + E V
Sbjct: 430 L--------CEAGKFVKDDVWHALI---VVISNASELHGYTVRALYKSVLTYSEQETLVR 478
Query: 419 I-IWMVGEYSSVGVKIPRML 437
+ +W +GEY + V ML
Sbjct: 479 VAVWCIGEYGDLLVNNVGML 498
>sp|Q03JN2|REX_STRTD Redox-sensing transcriptional repressor rex OS=Streptococcus
thermophilus (strain ATCC BAA-491 / LMD-9) GN=rex PE=3
SV=1
Length = 219
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 459 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQV 516
I+ T+ K + A G D T+ R FSY EL YDV FF +L + N ++V
Sbjct: 30 IVKTSSKQIAEAIGIDPATVRRDFSYFGELGRRGFGYDVSKLMTFFAELLNDNATTKV 87
>sp|Q0JNK5|COPB2_ORYSJ Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica
GN=Os01g0281400 PE=3 SV=1
Length = 950
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 334 VAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393
V AI CA + P++A + V L+ + G+ + ++ ++ II+ +P
Sbjct: 380 VQAIHACAVEYPEVAGSVVHLLMDFL-----------GDTNVAAAVDVVLFVREIIETNP 428
Query: 394 SCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS 427
+I +L + I+ +W++GEYS
Sbjct: 429 KLRVSMIQRLIDTFYQIRASRVCSCALWILGEYS 462
>sp|Q9PUE4|COPG2_DANRE Coatomer subunit gamma-2 OS=Danio rerio GN=copg2 PE=2 SV=2
Length = 873
Score = 34.3 bits (77), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 26/220 (11%)
Query: 289 SDSYQSKA-LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKM 347
+DS +S A L + L +ESS+ + K+ ++ + F V AI +K P+
Sbjct: 334 TDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRK 393
Query: 348 ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSL 407
+ + L ++R + G ++ II SII+++P E + L +
Sbjct: 394 HSVMMNFLSNMLRD-------DGGFEYKRAIVDCII---SIIEENPESKETGLAHLCEFI 443
Query: 408 DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETK-LQILNTTIKV 466
+ + I+ ++G+ G + P T KY+ + F +E++ ++ +
Sbjct: 444 EDCEHTVLATKILHLLGKE---GPRTP----TPSKYIRFIFNRVVLESEAVRAAAVSALA 496
Query: 467 LLCAKGGDMWTITRLFSYLLELAECDLNYD--VRDRARFF 504
A+ D+ L S L+ + C ++ D VRDRA F+
Sbjct: 497 KFGAQNDDL-----LPSVLVLMQRCMMDSDDEVRDRATFY 531
>sp|Q53PC7|COPB1_ORYSJ Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica
GN=Os11g0174000 PE=2 SV=1
Length = 953
Score = 33.9 bits (76), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 334 VAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393
V AI CA + P++A + V L+ + G+ + ++ ++ II+ +P
Sbjct: 381 VQAIHSCAVEYPEVAGSVVHLLMDFL-----------GDTNVAAAVDVVLFVREIIETNP 429
Query: 394 SCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS 427
+I +L + I+ +W++GEYS
Sbjct: 430 KLRVSMIQRLIDTFYQIRASRVCSCALWILGEYS 463
>sp|A3EWL3|REV1_ARATH DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1 PE=2 SV=1
Length = 1105
Score = 33.5 bits (75), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 487 ELAECDLNYDVRDRARFFKKLFSHNLCSQVPEET--NALQENKDLPLVLVECIFRKQENL 544
EL + Y R F ++ +H +CS +P+ N ++ LP+V I +++
Sbjct: 105 ELKGYMMKYGGRFENYFSRRSVTHIICSNLPDSKVKNLRTFSRGLPVVKPTWIV---DSI 161
Query: 545 AASEPINDRFYLPGSLSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTG 604
+A+ + ++P L Q+ P P S L + S T E G
Sbjct: 162 SANRLLG---WVPYQLDQLN-DTQPKLSAFFAPRSHLTPQMASPVTSFQPDTGYSEAEEG 217
Query: 605 SSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDNSGTGD 644
SS D + +D+E Y + + P L++ +GTGD
Sbjct: 218 SSIRADDSEEARDHIDDEIDGVY-IENTTPELTEQTGTGD 256
>sp|Q8I0G5|COPG_DROME Coatomer subunit gamma OS=Drosophila melanogaster GN=gammaCop PE=2
SV=1
Length = 883
Score = 33.5 bits (75), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 68/325 (20%), Positives = 129/325 (39%), Gaps = 35/325 (10%)
Query: 220 HNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSSGAS-----KYVVLCNIQVFAKALP 274
H S +V+ A H I++ K R++ P IL+ +S ++ + + A P
Sbjct: 270 HKSEMVIYEAA-HAIVNLKNTNPRMLSPAFSILQLFCSSPKATLRFAAVRTLNKVAMTHP 328
Query: 275 HLFVPHYEDFFVSSSDSYQSKA-LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADT 333
D +DS +S A L + L ESS+ + K+ ++ + F
Sbjct: 329 AAVTTCNLDLEGLITDSNRSVATLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVV 388
Query: 334 VAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDP 393
V AI K P+ + L ++R+E +E D +I +II+++
Sbjct: 389 VQAICALCTKYPRKHTVLMNFLSGMLREE---GGLEYKTSIVDTII-------TIIEENA 438
Query: 394 SCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAV 453
E + L ++ + V I+ ++G+ T KY+ + + +
Sbjct: 439 DAKESGLSHLCEFIEDCEHVSLAVRILHLLGKEGPFA-------ATPSKYIRFIYNRVIL 491
Query: 454 ETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYD--VRDRARFFKKLFSHN 511
E+ I+ + G + L + L+ L C ++ D VRDRA ++ + +
Sbjct: 492 ESP--IVRAAAVTAMAQFGASCPAL--LSNILVLLGRCQMDPDDEVRDRATYYLSILN-- 545
Query: 512 LCSQVPE-ETNALQENKDLPLVLVE 535
S+ PE N + E ++ L L+E
Sbjct: 546 --SERPELYKNYIIERENCSLALLE 568
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,112,929
Number of Sequences: 539616
Number of extensions: 15000606
Number of successful extensions: 44565
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 39669
Number of HSP's gapped (non-prelim): 2851
length of query: 1011
length of database: 191,569,459
effective HSP length: 128
effective length of query: 883
effective length of database: 122,498,611
effective search space: 108166273513
effective search space used: 108166273513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)