Query 001803
Match_columns 1011
No_of_seqs 271 out of 841
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:41:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1060 Vesicle coat complex A 100.0 1E-179 3E-184 1536.8 62.8 820 1-1004 132-968 (968)
2 PTZ00429 beta-adaptin; Provisi 100.0 4.2E-80 9.1E-85 747.6 41.2 447 1-570 129-596 (746)
3 KOG1061 Vesicle coat complex A 100.0 3.9E-69 8.4E-74 629.4 29.8 445 1-568 110-574 (734)
4 PF01602 Adaptin_N: Adaptin N 100.0 3.4E-56 7.3E-61 525.7 28.6 413 1-510 103-524 (526)
5 COG5096 Vesicle coat complex, 100.0 3E-45 6.4E-50 436.5 29.5 409 1-510 116-562 (757)
6 KOG1062 Vesicle coat complex A 100.0 4E-39 8.6E-44 376.2 43.7 454 2-573 132-622 (866)
7 KOG1077 Vesicle coat complex A 100.0 2E-36 4.4E-41 347.6 28.7 429 7-546 141-605 (938)
8 PF14796 AP3B1_C: Clathrin-ada 100.0 5.7E-35 1.2E-39 288.6 11.5 132 686-839 2-145 (145)
9 KOG1058 Vesicle coat complex C 99.9 1.1E-26 2.3E-31 269.8 20.6 325 1-428 123-463 (948)
10 KOG1059 Vesicle coat complex A 99.9 1.4E-22 3.1E-27 235.2 30.9 406 2-509 134-576 (877)
11 KOG1078 Vesicle coat complex C 99.8 2.4E-17 5.2E-22 194.2 29.3 408 12-510 100-532 (865)
12 COG5240 SEC21 Vesicle coat com 99.8 4.3E-16 9.3E-21 177.7 29.2 276 215-510 271-555 (898)
13 KOG1060 Vesicle coat complex A 99.5 2E-10 4.3E-15 136.3 42.8 125 807-941 769-914 (968)
14 PF01602 Adaptin_N: Adaptin N 98.9 1.6E-07 3.4E-12 111.9 22.3 355 16-472 46-410 (526)
15 PTZ00429 beta-adaptin; Provisi 98.2 0.0018 3.9E-08 81.0 33.4 87 16-105 72-158 (746)
16 PF12717 Cnd1: non-SMC mitotic 98.2 7.8E-06 1.7E-10 85.0 9.8 112 3-115 16-138 (178)
17 PRK13800 putative oxidoreducta 98.1 0.0002 4.4E-09 91.7 23.4 90 13-114 622-711 (897)
18 PRK09687 putative lyase; Provi 97.9 0.00074 1.6E-08 75.4 20.4 235 13-360 24-262 (280)
19 PRK13800 putative oxidoreducta 97.7 0.0025 5.5E-08 81.8 22.3 229 11-360 651-880 (897)
20 PRK09687 putative lyase; Provi 97.7 0.0024 5.2E-08 71.4 19.2 244 212-504 27-276 (280)
21 PF10508 Proteasom_PSMB: Prote 97.3 0.1 2.2E-06 63.2 27.5 110 7-116 72-189 (503)
22 KOG1062 Vesicle coat complex A 97.2 0.038 8.2E-07 68.0 22.7 208 55-361 112-343 (866)
23 PLN03200 cellulose synthase-in 97.2 0.24 5.1E-06 67.8 31.5 198 289-508 620-858 (2102)
24 PLN03200 cellulose synthase-in 97.0 0.11 2.4E-06 70.9 25.7 356 13-471 447-863 (2102)
25 KOG1058 Vesicle coat complex C 96.9 0.038 8.3E-07 67.4 18.0 63 13-78 100-162 (948)
26 cd00020 ARM Armadillo/beta-cat 96.8 0.0042 9.1E-08 58.3 7.9 102 13-114 8-118 (120)
27 KOG2171 Karyopherin (importin) 96.8 0.86 1.9E-05 58.6 29.5 392 14-505 161-585 (1075)
28 KOG2023 Nuclear transport rece 96.8 0.43 9.3E-06 58.1 25.3 410 6-510 387-854 (885)
29 COG5096 Vesicle coat complex, 96.7 0.11 2.4E-06 64.8 21.0 98 12-115 92-191 (757)
30 KOG2171 Karyopherin (importin) 96.7 1.5 3.3E-05 56.5 30.9 405 21-512 89-551 (1075)
31 KOG1059 Vesicle coat complex A 96.6 0.28 6.1E-06 60.1 22.6 240 8-360 105-346 (877)
32 KOG0212 Uncharacterized conser 96.5 0.58 1.3E-05 56.1 24.0 290 10-390 82-406 (675)
33 PF13646 HEAT_2: HEAT repeats; 96.5 0.0075 1.6E-07 54.4 7.0 84 15-111 2-87 (88)
34 KOG0413 Uncharacterized conser 96.5 0.2 4.4E-06 62.6 20.3 176 326-508 877-1071(1529)
35 PF12717 Cnd1: non-SMC mitotic 96.4 0.045 9.7E-07 57.0 13.2 102 255-356 1-107 (178)
36 PF14764 SPG48: AP-5 complex s 96.2 0.2 4.3E-06 59.3 17.9 125 385-511 292-447 (459)
37 KOG2259 Uncharacterized conser 96.1 0.42 9.2E-06 58.1 20.0 89 9-99 195-293 (823)
38 KOG1824 TATA-binding protein-i 95.8 0.25 5.5E-06 61.9 16.8 174 311-496 129-314 (1233)
39 PF02985 HEAT: HEAT repeat; I 95.7 0.012 2.5E-07 43.9 3.4 29 13-41 1-29 (31)
40 KOG2023 Nuclear transport rece 95.6 2.4 5.3E-05 51.9 23.6 74 8-81 86-159 (885)
41 PF04826 Arm_2: Armadillo-like 95.6 0.57 1.2E-05 51.9 17.4 166 23-270 24-204 (254)
42 PF05804 KAP: Kinesin-associat 95.5 1.7 3.6E-05 54.7 22.8 288 7-393 289-610 (708)
43 PF10508 Proteasom_PSMB: Prote 95.4 0.3 6.4E-06 59.2 15.8 200 257-470 16-233 (503)
44 PF13513 HEAT_EZ: HEAT-like re 95.3 0.034 7.4E-07 46.3 5.2 52 26-77 1-55 (55)
45 cd00256 VATPase_H VATPase_H, r 95.2 3.8 8.3E-05 48.8 23.6 210 244-470 186-427 (429)
46 PF05804 KAP: Kinesin-associat 94.9 1.3 2.9E-05 55.6 19.7 284 209-510 332-649 (708)
47 KOG1241 Karyopherin (importin) 94.6 6.3 0.00014 49.2 23.3 355 7-470 318-713 (859)
48 KOG1241 Karyopherin (importin) 94.5 13 0.00029 46.5 25.8 355 6-428 400-811 (859)
49 TIGR02270 conserved hypothetic 94.3 2.1 4.6E-05 50.7 18.6 225 11-360 53-279 (410)
50 smart00809 Alpha_adaptinC2 Ada 94.3 0.43 9.4E-06 44.9 10.6 92 738-855 3-95 (104)
51 PF14807 AP4E_app_platf: Adapt 94.2 0.36 7.8E-06 46.4 9.7 104 865-1005 1-104 (104)
52 PF12755 Vac14_Fab1_bd: Vacuol 93.9 0.16 3.5E-06 48.1 6.8 66 5-70 20-88 (97)
53 PF12719 Cnd3: Nuclear condens 93.9 1.8 3.8E-05 48.9 16.2 130 313-481 26-157 (298)
54 KOG0166 Karyopherin (importin) 93.9 6.7 0.00015 47.5 21.5 240 19-343 116-394 (514)
55 KOG1242 Protein containing ada 93.8 3.7 7.9E-05 50.1 19.2 111 5-116 210-324 (569)
56 KOG1078 Vesicle coat complex C 93.5 6.1 0.00013 49.4 20.5 83 12-101 64-149 (865)
57 PF12348 CLASP_N: CLASP N term 93.2 0.28 6E-06 52.5 8.0 145 206-352 51-216 (228)
58 COG5240 SEC21 Vesicle coat com 93.0 14 0.00031 44.9 21.8 60 216-275 348-408 (898)
59 KOG1020 Sister chromatid cohes 92.9 39 0.00085 45.5 27.2 106 255-360 1049-1171(1692)
60 KOG0213 Splicing factor 3b, su 92.8 19 0.00041 45.1 22.8 76 3-78 790-869 (1172)
61 KOG0212 Uncharacterized conser 92.5 32 0.0007 42.1 24.6 106 396-506 334-440 (675)
62 KOG1525 Sister chromatid cohes 92.0 7 0.00015 52.1 19.5 199 259-472 117-333 (1266)
63 KOG1824 TATA-binding protein-i 91.9 26 0.00056 45.1 22.8 241 11-361 46-309 (1233)
64 PF13646 HEAT_2: HEAT repeats; 91.8 1.2 2.6E-05 40.0 9.1 84 400-502 1-84 (88)
65 KOG0213 Splicing factor 3b, su 91.7 45 0.00098 42.0 29.1 104 12-116 553-665 (1172)
66 COG5215 KAP95 Karyopherin (imp 91.5 24 0.00052 43.1 21.3 220 220-469 462-712 (858)
67 cd00020 ARM Armadillo/beta-cat 91.2 1.1 2.3E-05 41.9 8.4 101 314-426 8-118 (120)
68 TIGR02270 conserved hypothetic 89.7 26 0.00057 41.6 20.0 89 13-115 87-175 (410)
69 PF14797 SEEEED: Serine-rich r 89.4 0.42 9.2E-06 46.4 3.9 27 600-626 3-30 (130)
70 KOG1525 Sister chromatid cohes 89.1 7.2 0.00016 52.0 15.9 207 293-510 237-472 (1266)
71 KOG0211 Protein phosphatase 2A 88.1 6.5 0.00014 49.9 14.1 256 8-342 394-664 (759)
72 KOG1240 Protein kinase contain 87.0 25 0.00055 46.2 18.2 103 9-115 423-536 (1431)
73 PF13513 HEAT_EZ: HEAT-like re 86.3 0.75 1.6E-05 38.2 3.3 33 7-39 23-55 (55)
74 COG5181 HSH155 U2 snRNP splice 86.3 97 0.0021 38.5 25.9 102 11-113 357-467 (975)
75 PF10363 DUF2435: Protein of u 86.2 3.7 7.9E-05 38.7 8.1 77 16-98 7-88 (92)
76 KOG0166 Karyopherin (importin) 86.1 9 0.0002 46.4 13.1 197 218-427 120-350 (514)
77 KOG1991 Nuclear transport rece 86.0 1E+02 0.0023 40.1 22.6 176 260-448 390-594 (1010)
78 KOG1077 Vesicle coat complex A 85.8 1.1E+02 0.0024 38.6 32.4 277 7-361 106-415 (938)
79 PF02854 MIF4G: MIF4G domain; 85.3 22 0.00047 36.6 14.4 151 298-468 3-163 (209)
80 PF12348 CLASP_N: CLASP N term 84.7 5.7 0.00012 42.4 10.0 103 243-345 53-163 (228)
81 PF02883 Alpha_adaptinC2: Adap 84.0 3.3 7.1E-05 39.8 7.0 86 739-848 8-99 (115)
82 KOG1061 Vesicle coat complex A 83.0 23 0.0005 44.5 15.0 177 239-427 45-230 (734)
83 KOG2160 Armadillo/beta-catenin 82.8 48 0.001 38.5 16.5 167 294-471 99-285 (342)
84 COG5098 Chromosome condensatio 82.3 3.5 7.5E-05 50.8 7.5 69 10-78 344-414 (1128)
85 COG1413 FOG: HEAT repeat [Ener 81.8 98 0.0021 35.0 22.4 92 11-115 42-134 (335)
86 PF10633 NPCBM_assoc: NPCBM-as 81.7 2.1 4.5E-05 38.5 4.3 61 759-840 6-66 (78)
87 PF12719 Cnd3: Nuclear condens 80.1 1.1E+02 0.0023 34.6 18.3 129 208-358 26-160 (298)
88 KOG1242 Protein containing ada 79.2 1.7E+02 0.0037 36.2 29.4 394 13-505 19-439 (569)
89 PF12755 Vac14_Fab1_bd: Vacuol 78.5 10 0.00023 35.9 8.1 73 436-509 24-96 (97)
90 PF08167 RIX1: rRNA processing 78.1 29 0.00063 35.9 12.0 125 238-399 20-152 (165)
91 KOG0211 Protein phosphatase 2A 78.0 87 0.0019 40.2 18.0 92 13-105 238-333 (759)
92 KOG2140 Uncharacterized conser 78.0 27 0.00058 42.3 12.6 115 297-420 166-297 (739)
93 KOG1932 TATA binding protein a 77.6 40 0.00086 44.2 14.9 250 202-501 628-924 (1180)
94 COG5181 HSH155 U2 snRNP splice 77.5 2E+02 0.0043 36.0 22.9 75 4-78 596-674 (975)
95 KOG2259 Uncharacterized conser 77.4 2.1E+02 0.0045 36.1 29.1 68 47-115 195-262 (823)
96 PF12530 DUF3730: Protein of u 77.4 77 0.0017 34.7 15.6 123 216-341 9-150 (234)
97 PF12765 Cohesin_HEAT: HEAT re 77.3 2.2 4.9E-05 34.3 2.7 25 11-35 17-41 (42)
98 COG1470 Predicted membrane pro 77.1 6.2 0.00014 46.9 7.3 63 761-844 400-462 (513)
99 PF10363 DUF2435: Protein of u 75.6 23 0.00051 33.3 9.4 47 314-360 4-53 (92)
100 PF01603 B56: Protein phosphat 75.3 80 0.0017 37.6 16.1 125 377-505 191-321 (409)
101 KOG1240 Protein kinase contain 72.7 28 0.0006 45.9 11.8 110 7-116 573-685 (1431)
102 smart00543 MIF4G Middle domain 72.2 1.2E+02 0.0027 31.1 15.2 57 301-360 7-63 (200)
103 PF03224 V-ATPase_H_N: V-ATPas 71.8 24 0.00052 40.0 10.3 64 51-116 60-134 (312)
104 COG1413 FOG: HEAT repeat [Ener 71.4 13 0.00029 42.0 8.2 81 11-103 73-153 (335)
105 KOG4224 Armadillo repeat prote 71.2 1.1E+02 0.0023 36.0 14.8 245 18-344 133-407 (550)
106 KOG1020 Sister chromatid cohes 71.2 64 0.0014 43.7 14.6 148 309-472 812-964 (1692)
107 KOG2038 CAATT-binding transcri 70.7 2.5E+02 0.0055 36.0 18.7 69 9-78 301-369 (988)
108 KOG1943 Beta-tubulin folding c 69.5 20 0.00043 46.6 9.5 108 6-113 418-551 (1133)
109 COG5218 YCG1 Chromosome conden 68.8 3.1E+02 0.0066 34.3 18.6 70 9-80 129-199 (885)
110 PF08713 DNA_alkylation: DNA a 68.5 8 0.00017 40.8 5.3 71 11-84 119-189 (213)
111 PF09066 B2-adapt-app_C: Beta2 67.9 35 0.00075 32.8 9.1 110 864-1004 2-113 (114)
112 KOG0414 Chromosome condensatio 67.9 2E+02 0.0043 38.5 17.7 213 240-472 193-432 (1251)
113 PF04826 Arm_2: Armadillo-like 67.9 37 0.00081 37.8 10.4 101 15-115 57-162 (254)
114 PF04078 Rcd1: Cell differenti 67.5 25 0.00054 39.3 8.8 185 213-420 29-227 (262)
115 PF04931 DNA_pol_phi: DNA poly 67.2 4.6 9.9E-05 51.8 3.6 8 531-538 588-595 (784)
116 KOG1832 HIV-1 Vpr-binding prot 66.9 5.1 0.00011 50.5 3.6 33 287-319 753-785 (1516)
117 PF02296 Alpha_adaptin_C: Alph 66.8 41 0.00089 32.9 9.3 103 863-996 1-110 (113)
118 PF14631 FancD2: Fanconi anaem 66.1 69 0.0015 44.0 14.1 134 207-342 434-587 (1426)
119 KOG2032 Uncharacterized conser 66.1 3.2E+02 0.0069 33.5 20.1 107 9-115 255-373 (533)
120 PF05918 API5: Apoptosis inhib 65.6 14 0.00029 45.5 6.9 80 16-97 27-106 (556)
121 KOG0414 Chromosome condensatio 65.6 21 0.00046 46.8 8.8 110 4-116 990-1102(1251)
122 KOG1991 Nuclear transport rece 64.9 4.4E+02 0.0096 34.7 26.7 97 415-512 478-602 (1010)
123 PF02985 HEAT: HEAT repeat; I 64.6 8.2 0.00018 28.6 3.1 28 51-78 1-28 (31)
124 KOG2081 Nuclear transport regu 64.2 74 0.0016 39.0 12.4 110 328-450 367-479 (559)
125 PF05536 Neurochondrin: Neuroc 64.1 1.9E+02 0.0042 35.8 16.5 178 290-508 69-259 (543)
126 KOG2051 Nonsense-mediated mRNA 64.1 4.7E+02 0.01 34.8 23.0 45 315-360 547-591 (1128)
127 PF14500 MMS19_N: Dos2-interac 62.3 1E+02 0.0022 34.5 12.6 68 315-391 1-70 (262)
128 KOG3723 PH domain protein Melt 61.6 39 0.00083 41.3 9.3 62 388-452 226-287 (851)
129 PF05918 API5: Apoptosis inhib 61.0 33 0.00071 42.3 9.0 102 6-114 53-160 (556)
130 smart00638 LPD_N Lipoprotein N 60.7 4E+02 0.0087 32.8 18.9 193 292-511 340-544 (574)
131 cd06561 AlkD_like A new struct 59.3 17 0.00037 37.8 5.6 64 15-80 108-171 (197)
132 smart00638 LPD_N Lipoprotein N 58.0 22 0.00049 43.7 7.2 78 1-81 470-547 (574)
133 cd03568 VHS_STAM VHS domain fa 57.7 76 0.0016 32.4 9.7 72 208-281 4-76 (144)
134 KOG1992 Nuclear export recepto 57.5 5.5E+02 0.012 33.4 21.0 88 23-115 16-116 (960)
135 PF12460 MMS19_C: RNAPII trans 55.7 4.2E+02 0.009 31.5 19.0 182 292-488 204-414 (415)
136 KOG4224 Armadillo repeat prote 55.3 1.1E+02 0.0025 35.8 11.3 248 14-343 169-447 (550)
137 KOG2956 CLIP-associating prote 54.6 2.6E+02 0.0057 33.9 14.5 80 257-336 302-394 (516)
138 PF01347 Vitellogenin_N: Lipop 53.3 1.3E+02 0.0028 37.4 12.7 195 291-512 377-589 (618)
139 PF06685 DUF1186: Protein of u 52.7 36 0.00078 37.9 6.9 75 15-90 114-195 (249)
140 KOG2160 Armadillo/beta-catenin 52.3 57 0.0012 37.9 8.6 96 20-116 132-240 (342)
141 PF08631 SPO22: Meiosis protei 52.1 3.8E+02 0.0082 29.9 17.5 151 206-357 12-185 (278)
142 KOG4653 Uncharacterized conser 51.9 6.5E+02 0.014 32.9 17.9 208 279-511 684-919 (982)
143 PF14500 MMS19_N: Dos2-interac 51.3 4E+02 0.0086 29.9 19.6 64 283-346 175-241 (262)
144 COG5116 RPN2 26S proteasome re 50.8 55 0.0012 40.1 8.3 89 373-470 564-652 (926)
145 KOG2025 Chromosome condensatio 49.8 2.7E+02 0.0059 35.4 14.0 56 440-499 127-182 (892)
146 PF05110 AF-4: AF-4 proto-onco 49.8 19 0.00041 48.0 4.8 14 77-90 26-39 (1191)
147 PF11701 UNC45-central: Myosin 49.7 42 0.0009 34.5 6.4 93 23-115 16-116 (157)
148 PF06685 DUF1186: Protein of u 49.4 1.1E+02 0.0023 34.2 9.9 80 315-404 113-194 (249)
149 PF10521 DUF2454: Protein of u 49.1 1E+02 0.0023 34.6 10.1 73 7-79 114-203 (282)
150 KOG2274 Predicted importin 9 [ 49.1 3.8E+02 0.0083 35.0 15.4 59 19-78 97-156 (1005)
151 KOG0915 Uncharacterized conser 48.8 9.4E+02 0.02 33.5 20.6 148 201-348 1270-1433(1702)
152 PF14664 RICTOR_N: Rapamycin-i 48.2 1.1E+02 0.0025 35.9 10.5 19 251-269 34-52 (371)
153 KOG1189 Global transcriptional 47.9 17 0.00036 45.6 3.6 11 51-61 180-190 (960)
154 cd03569 VHS_Hrs_Vps27p VHS dom 47.7 1.2E+02 0.0026 30.8 9.2 72 208-281 8-80 (142)
155 PF10274 ParcG: Parkin co-regu 47.3 91 0.002 33.2 8.5 84 9-96 39-129 (183)
156 PF06483 ChiC: Chitinase C; I 47.1 60 0.0013 34.3 7.0 113 739-857 33-164 (180)
157 KOG0915 Uncharacterized conser 47.1 1E+03 0.022 33.3 22.2 79 25-103 970-1054(1702)
158 PF10274 ParcG: Parkin co-regu 45.4 38 0.00083 36.0 5.4 54 5-59 73-126 (183)
159 KOG1943 Beta-tubulin folding c 45.3 67 0.0015 42.1 8.4 78 5-82 334-412 (1133)
160 smart00567 EZ_HEAT E-Z type HE 45.2 28 0.00061 25.3 3.2 29 26-61 1-29 (30)
161 KOG2274 Predicted importin 9 [ 44.6 8.8E+02 0.019 32.0 22.8 74 42-115 483-558 (1005)
162 PF05004 IFRD: Interferon-rela 44.1 5.5E+02 0.012 29.5 18.0 89 14-102 45-144 (309)
163 KOG1832 HIV-1 Vpr-binding prot 43.3 24 0.00053 44.9 4.0 13 256-268 676-688 (1516)
164 PF11698 V-ATPase_H_C: V-ATPas 42.9 41 0.00088 33.4 4.8 73 393-469 38-116 (119)
165 PF00790 VHS: VHS domain; Int 42.8 65 0.0014 32.3 6.5 73 207-281 8-81 (140)
166 PF14664 RICTOR_N: Rapamycin-i 42.0 5.1E+02 0.011 30.6 14.5 220 205-472 22-273 (371)
167 cd03565 VHS_Tom1 VHS domain fa 41.4 1.7E+02 0.0037 29.6 9.3 73 207-281 4-78 (141)
168 TIGR01451 B_ant_repeat conserv 41.0 35 0.00076 28.7 3.5 31 758-792 12-42 (53)
169 KOG1820 Microtubule-associated 40.4 3.2E+02 0.007 35.6 13.3 71 8-78 249-323 (815)
170 COG5098 Chromosome condensatio 40.3 4.6E+02 0.0099 33.5 13.8 167 293-472 237-419 (1128)
171 PF04388 Hamartin: Hamartin pr 40.1 2.5E+02 0.0055 35.7 12.4 124 278-427 41-169 (668)
172 PF04931 DNA_pol_phi: DNA poly 39.9 23 0.00051 45.5 3.4 27 15-41 6-32 (784)
173 COG5593 Nucleic-acid-binding p 39.6 3E+02 0.0065 33.9 11.9 115 246-360 123-275 (821)
174 cd03561 VHS VHS domain family; 39.6 3.9E+02 0.0085 26.5 12.0 71 209-281 5-76 (133)
175 PF13251 DUF4042: Domain of un 39.3 1.2E+02 0.0027 32.2 8.1 51 258-308 2-70 (182)
176 PF11935 DUF3453: Domain of un 38.9 4E+02 0.0087 29.3 12.4 111 241-360 41-163 (239)
177 KOG4653 Uncharacterized conser 38.7 2.3E+02 0.0051 36.7 11.4 129 214-345 738-879 (982)
178 KOG1949 Uncharacterized conser 38.1 1E+02 0.0022 38.9 8.0 105 9-115 217-330 (1005)
179 KOG1684 Enoyl-CoA hydratase [L 37.6 79 0.0017 36.9 6.7 65 289-360 256-321 (401)
180 PF14663 RasGEF_N_2: Rapamycin 37.6 40 0.00086 32.9 3.9 34 48-81 6-39 (115)
181 PF14874 PapD-like: Flagellar- 37.2 2.4E+02 0.0051 26.2 9.0 74 760-858 22-99 (102)
182 KOG0567 HEAT repeat-containing 37.0 63 0.0014 36.3 5.6 27 13-39 188-214 (289)
183 KOG2051 Nonsense-mediated mRNA 36.8 1.2E+03 0.025 31.5 17.1 203 298-513 407-617 (1128)
184 KOG2973 Uncharacterized conser 36.7 1.2E+02 0.0026 34.9 7.8 65 14-81 5-73 (353)
185 PF08167 RIX1: rRNA processing 36.4 2.6E+02 0.0057 28.8 10.0 43 241-284 114-156 (165)
186 cd00197 VHS_ENTH_ANTH VHS, ENT 36.1 1.2E+02 0.0025 29.2 6.8 96 209-306 5-114 (115)
187 PF13981 SopA: SopA-like centr 35.7 1.2E+02 0.0025 30.8 6.9 106 399-508 7-121 (135)
188 PF11611 DUF4352: Domain of un 35.1 1.2E+02 0.0026 28.9 6.8 75 756-845 34-112 (123)
189 KOG1949 Uncharacterized conser 34.6 73 0.0016 40.1 6.1 67 12-78 174-248 (1005)
190 cd03567 VHS_GGA VHS domain fam 34.2 1.2E+02 0.0025 30.9 6.7 72 208-281 5-77 (139)
191 PF00514 Arm: Armadillo/beta-c 33.9 59 0.0013 25.3 3.6 27 13-39 13-39 (41)
192 PF10521 DUF2454: Protein of u 33.6 2.3E+02 0.005 31.9 9.7 121 240-360 116-271 (282)
193 PHA02664 hypothetical protein; 33.2 31 0.00067 39.2 2.5 27 334-360 242-268 (534)
194 PF12830 Nipped-B_C: Sister ch 33.0 1.5E+02 0.0033 31.2 7.7 78 8-89 4-84 (187)
195 cd06561 AlkD_like A new struct 32.5 86 0.0019 32.6 5.7 35 10-44 139-173 (197)
196 KOG0946 ER-Golgi vesicle-tethe 32.1 6E+02 0.013 33.0 13.2 128 244-395 62-200 (970)
197 KOG1293 Proteins containing ar 32.0 2.1E+02 0.0046 35.9 9.4 41 244-289 420-461 (678)
198 KOG1248 Uncharacterized conser 31.8 1.5E+03 0.032 30.8 34.5 131 378-510 714-856 (1176)
199 cd07064 AlkD_like_1 A new stru 31.7 1.1E+02 0.0025 32.8 6.6 62 14-78 117-178 (208)
200 PRK15098 beta-D-glucoside gluc 31.7 97 0.0021 40.0 7.0 61 757-836 666-729 (765)
201 PF14837 INTS5_N: Integrator c 31.4 3.7E+02 0.0081 29.4 10.3 47 312-358 2-52 (213)
202 PF08161 NUC173: NUC173 domain 31.0 7E+02 0.015 26.8 12.4 32 239-270 167-198 (198)
203 KOG2025 Chromosome condensatio 31.0 1.3E+03 0.028 29.9 27.3 168 22-274 16-196 (892)
204 KOG1248 Uncharacterized conser 30.6 1.5E+03 0.033 30.7 23.6 271 225-508 593-896 (1176)
205 PF01345 DUF11: Domain of unkn 30.0 60 0.0013 28.8 3.5 30 758-791 41-70 (76)
206 KOG1517 Guanine nucleotide bin 29.3 1.1E+02 0.0023 40.3 6.5 64 16-79 604-671 (1387)
207 KOG1967 DNA repair/transcripti 29.3 6.5E+02 0.014 33.2 13.1 147 308-469 38-199 (1030)
208 PF12530 DUF3730: Protein of u 28.9 2.4E+02 0.0053 30.8 8.7 70 26-96 98-168 (234)
209 COG5406 Nucleosome binding fac 28.8 48 0.001 40.9 3.3 21 21-41 39-59 (1001)
210 KOG2956 CLIP-associating prote 28.5 3.1E+02 0.0067 33.4 9.7 97 13-115 330-434 (516)
211 PF05753 TRAP_beta: Translocon 28.4 90 0.002 33.1 5.0 58 758-833 38-96 (181)
212 PF12074 DUF3554: Domain of un 28.3 9.4E+02 0.02 27.5 14.1 66 295-360 4-71 (339)
213 PF04821 TIMELESS: Timeless pr 28.0 3.5E+02 0.0076 30.3 9.9 62 244-311 14-76 (266)
214 PF06524 NOA36: NOA36 protein; 27.8 58 0.0013 36.3 3.4 10 559-568 229-238 (314)
215 PF06524 NOA36: NOA36 protein; 27.8 72 0.0016 35.5 4.1 7 557-563 180-186 (314)
216 KOG2236 Uncharacterized conser 27.6 63 0.0014 38.7 3.9 19 558-576 71-90 (483)
217 KOG2062 26S proteasome regulat 27.3 57 0.0012 41.2 3.6 56 21-80 564-619 (929)
218 PF07571 DUF1546: Protein of u 27.2 1.9E+02 0.0041 27.2 6.4 58 22-80 16-79 (92)
219 PLN03076 ARF guanine nucleotid 26.3 1.6E+03 0.036 32.1 17.2 126 219-344 1148-1301(1780)
220 KOG0168 Putative ubiquitin fus 25.8 6.9E+02 0.015 32.7 12.4 116 241-360 209-345 (1051)
221 PF12397 U3snoRNP10: U3 small 25.8 5.9E+02 0.013 24.6 9.9 85 8-93 2-91 (121)
222 KOG1293 Proteins containing ar 25.4 2.8E+02 0.006 34.9 8.9 102 14-115 421-532 (678)
223 PF13251 DUF4042: Domain of un 25.2 3.9E+02 0.0085 28.4 9.0 51 28-78 2-68 (182)
224 PF05327 RRN3: RNA polymerase 25.1 7.8E+02 0.017 30.6 13.0 70 329-408 52-121 (563)
225 PF05327 RRN3: RNA polymerase 25.0 9.2E+02 0.02 30.0 13.6 131 311-449 71-211 (563)
226 smart00288 VHS Domain present 25.0 2.4E+02 0.0052 28.2 7.1 71 209-281 5-76 (133)
227 COG5218 YCG1 Chromosome conden 24.3 7.3E+02 0.016 31.3 11.8 70 311-387 89-158 (885)
228 PF12460 MMS19_C: RNAPII trans 24.2 2.8E+02 0.006 32.9 8.6 87 11-97 322-412 (415)
229 PF12830 Nipped-B_C: Sister ch 24.0 8.6E+02 0.019 25.6 14.6 137 312-471 7-143 (187)
230 PF08713 DNA_alkylation: DNA a 24.0 1.1E+02 0.0023 32.3 4.6 36 9-44 152-187 (213)
231 KOG0413 Uncharacterized conser 23.6 49 0.0011 42.8 2.2 96 24-122 943-1039(1529)
232 KOG2011 Sister chromatid cohes 23.6 1.3E+02 0.0028 39.8 6.0 126 380-510 264-399 (1048)
233 COG0190 FolD 5,10-methylene-te 22.9 77 0.0017 36.0 3.4 92 25-116 45-152 (283)
234 PF03130 HEAT_PBS: PBS lyase H 22.7 73 0.0016 23.0 2.1 13 28-40 1-13 (27)
235 COG5406 Nucleosome binding fac 22.6 60 0.0013 40.1 2.6 6 273-278 411-416 (1001)
236 PF11698 V-ATPase_H_C: V-ATPas 22.5 2.1E+02 0.0046 28.4 6.0 70 312-392 42-117 (119)
237 KOG1822 Uncharacterized conser 22.3 2.5E+03 0.054 30.5 17.0 72 9-80 913-990 (2067)
238 PF01603 B56: Protein phosphat 22.2 7E+02 0.015 29.7 11.4 120 384-510 241-370 (409)
239 PF12765 Cohesin_HEAT: HEAT re 22.2 1.4E+02 0.003 24.0 3.8 39 35-73 2-41 (42)
240 KOG0943 Predicted ubiquitin-pr 22.0 1.2E+02 0.0027 40.1 5.2 13 496-508 1524-1536(3015)
241 KOG0168 Putative ubiquitin fus 21.6 9.7E+02 0.021 31.5 12.5 91 326-428 225-323 (1051)
242 PF04147 Nop14: Nop14-like fam 21.5 74 0.0016 41.4 3.3 26 755-780 563-588 (840)
243 cd00256 VATPase_H VATPase_H, r 21.5 1.4E+03 0.031 27.6 13.7 67 243-309 53-132 (429)
244 KOG0891 DNA-dependent protein 21.2 2.9E+03 0.063 30.7 26.8 155 335-506 363-554 (2341)
245 PF07705 CARDB: CARDB; InterP 20.9 2.9E+02 0.0063 24.9 6.4 55 757-835 18-72 (101)
246 PRK10941 hypothetical protein; 20.8 2.1E+02 0.0047 32.2 6.4 33 477-510 199-231 (269)
247 cd05700 S1_Rrp5_repeat_hs9 S1_ 20.6 82 0.0018 27.7 2.3 17 819-835 40-57 (65)
248 PF01347 Vitellogenin_N: Lipop 20.6 76 0.0017 39.3 3.1 74 3-81 516-591 (618)
249 PF02724 CDC45: CDC45-like pro 20.4 89 0.0019 39.3 3.6 12 745-756 303-316 (622)
250 PF00927 Transglut_C: Transglu 20.3 83 0.0018 29.8 2.6 62 759-837 16-79 (107)
251 PF09759 Atx10homo_assoc: Spin 20.2 1.7E+02 0.0037 28.3 4.7 63 329-398 2-67 (102)
252 KOG2753 Uncharacterized conser 20.1 1.1E+03 0.024 27.8 11.6 144 203-347 60-220 (378)
No 1
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-179 Score=1536.80 Aligned_cols=820 Identities=36% Similarity=0.551 Sum_probs=670.7
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~ 80 (1011)
|||||||+|+||||+|||+|++|++|||||+|||||+|||+++| +++++|+++|++||+|++|.|+|+|++||.||||+
T Consensus 132 lSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe 210 (968)
T KOG1060|consen 132 LSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE 210 (968)
T ss_pred HHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh
Confidence 79999999999999999999999999999999999999999999 88889999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccc
Q 001803 81 NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYD 160 (1011)
Q Consensus 81 r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~ 160 (1011)
|++||||||||||++|+|+|||||+++|+||+|||| ++|++|+.|-... ++.+ .+
T Consensus 211 rldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR--~~l~~P~~~~~~~------------------e~n~-----~~ 265 (968)
T KOG1060|consen 211 RLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYAR--HQLPDPTVVDSSL------------------EDNG-----RS 265 (968)
T ss_pred HHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHH--hcCCCcccccccc------------------ccCc-----cc
Confidence 999999999999999999999999999999999985 6799986432211 1110 00
Q ss_pred hhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH
Q 001803 161 SELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED 240 (1011)
Q Consensus 161 ~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~ 240 (1011)
.. ..+.+ + ....++.+|+||++||++++|||||+|++||||||++|||+||+.+
T Consensus 266 ~~-----------~~~~~--------------~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~ 319 (968)
T KOG1060|consen 266 CN-----------LKDKY--------------N-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ 319 (968)
T ss_pred cc-----------ccccc--------------c-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH
Confidence 00 00000 0 0113467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 001803 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQD 320 (1011)
Q Consensus 241 l~~i~~pLv~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~ 320 (1011)
...+++||+|||++++++||++|++|+.|+.++|.+|.||++.||++.+||++||.+||+||++|+|++|+..|++||++
T Consensus 320 ~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~ 399 (968)
T KOG1060|consen 320 VTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQT 399 (968)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHH
Q 001803 321 YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI 400 (1011)
Q Consensus 321 Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii 400 (1011)
|+++.|.+|++.||+|||+||.++-.++++||+||+.||++ .++.||.|+|++||.|||++|..|.+++
T Consensus 400 YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss-----------hde~Vv~eaV~vIk~Llq~~p~~h~~ii 468 (968)
T KOG1060|consen 400 YIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS-----------HDELVVAEAVVVIKRLLQKDPAEHLEIL 468 (968)
T ss_pred HHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc-----------ccchhHHHHHHHHHHHHhhChHHHHHHH
Confidence 99999999999999999999999999999999999999984 4678999999999999999999999999
Q ss_pred HHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 001803 401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITR 480 (1011)
Q Consensus 401 ~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~ 480 (1011)
.+|++.++.|..|.|||+|+|||||||. .+|.++|||||+++|+|.+|.++||+|||+++||||+.++. .+++
T Consensus 469 ~~La~lldti~vp~ARA~IiWLige~~e---~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~~----~~kl 541 (968)
T KOG1060|consen 469 FQLARLLDTILVPAARAGIIWLIGEYCE---IVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNID----QTKL 541 (968)
T ss_pred HHHHHHhhhhhhhhhhceeeeeehhhhh---hcchhchHHHHHHHHhhccccchhhHHHHHhhhhheEechh----hHHH
Confidence 9999999999999999999999999994 68999999999999999999999999999999999999976 5889
Q ss_pred HHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhccCCCCCC-CCCCCccCcCCCc
Q 001803 481 LFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAA-SEPINDRFYLPGS 559 (1011)
Q Consensus 481 L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~p~~~-~~~~~~r~~~lGS 559 (1011)
++||||+|++||.+||+|||||||++|+.+. ..+ .++++.+|.+.+|++. ++.+++|+|++||
T Consensus 542 l~~Yv~~L~~yD~sYDiRDRaRF~r~l~~~~---------------~~L-s~h~~ei~l~~Kpa~~~es~f~~~~~~~gs 605 (968)
T KOG1060|consen 542 LVQYVFELARYDLSYDIRDRARFLRQLISPL---------------EAL-SKHAREIFLASKPAPVLESSFKDRHYQLGS 605 (968)
T ss_pred HHHHHHHHhccCCCcchhHHHHHHHHHhccH---------------HHH-HHHHHHHhhccCCCccCcccccCCCcccch
Confidence 9999999999999999999999999999873 122 5788888877766665 8899999999999
Q ss_pred HHHHhhccCCCCccCCCCCCCcCcccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 001803 560 LSQIVLHAAPGYEPLPKPCSSLCDDLGQFSNSIDRTTALGEEWTGSSSNGTDDPDTSGSLDEESGSNYDSQQSIPGLSDN 639 (1011)
Q Consensus 560 LS~~~~~~~~gY~~Lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~s~~~~~~~~s~~~~~~~~~~~s~~ 639 (1011)
+||+++++++||+|||+|+...++..+ .+ .+++.|++++|++++.+++++++++++++++++.+++
T Consensus 606 lS~lLn~~a~GY~~lp~~~~~~~d~~~------~~---~~a~~~~~~~e~~e~~~~~~~s~~~ses~~~~~~~~e----- 671 (968)
T KOG1060|consen 606 LSLLLNAPAPGYEPLPNWPAVAPDPFP------DS---ERAKLLDSDSEEEETGDDESWSDPESESGESSNFSRE----- 671 (968)
T ss_pred HHHHhcCcCcCCccCCCccccCCCCCc------ch---hhcccccCCccccccccccCCCCCccccccCCccccc-----
Confidence 999999999999999999999887200 11 2356688888876543332323333332222211111
Q ss_pred CCCCCCCCCCCCCCCC-cccccccccccCCCCCCCCCCCCC----cccccchhccccccCCCCCCCC--C-----Cchhh
Q 001803 640 SGTGDSASEGDRNCDP-LIQISDAGIACSNENGASHSGFPD----LEGMMSKRALESWLDEQPGSSS--P-----SASEQ 707 (1011)
Q Consensus 640 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ld~~~~~~~--~-----~~~~~ 707 (1011)
++++..++++.++++. .-+.+.++.+.++.+++++..++. +.+..+.++....+++..+.+. . .+.++
T Consensus 672 ~ge~~dsn~~~~~~~d~sdqss~~~ss~~d~~s~se~e~e~~~e~~k~~pet~~~sl~l~d~~~~n~~P~~~~~~~~~l~ 751 (968)
T KOG1060|consen 672 GGEENDSNEEKDSEDDFSDQSSYEESSAEDSESSSEAESEPTPEKLKEKPETKDVSLDLNDFTPQNGKPVLPERNDPDLA 751 (968)
T ss_pred ccccccccccccccccccccchhccccccccccccccccccCCCccCCCcccccccccccccCCCCCCCCCCCCCChhhh
Confidence 1111111111111000 000000000000000000000000 0010111122235555543322 1 12222
Q ss_pred hh---hhccccceeeccccc-cccCcceecccccCCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccc
Q 001803 708 IQ---VRQSSARISIGNIGR-QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEE 783 (1011)
Q Consensus 708 ~~---~~~s~~~~~~~~~~~-~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~~~~~~mv~v~l~f~N~s~~~i~~i~i~~~~ 783 (1011)
.. +.....+.+.....+ .++.|++||||++.|+||.++|+|+|+| + |+++++|+|.++.++.+||+
T Consensus 752 ~d~~~~~~~~s~~~~~~~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~----~--~~i~~~~~n~~~~~~~~~~l---- 821 (968)
T KOG1060|consen 752 ADDEFFSLTGSRNSKPLKIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP----D--VSISLHFTNKSDLELLGIHL---- 821 (968)
T ss_pred ccccccccccccccccccCCccCcchhHhhhhhcccCCcceeeeccCCC----C--eeEEEecccCCCccccccee----
Confidence 21 222222222222222 4778999999999999999999999999 2 99999999999999999999
Q ss_pred cchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEEecCcccc
Q 001803 784 SHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYF 863 (1011)
Q Consensus 784 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgidF~~~~~~~~~~l~~~~~~~~v~i~p~vgel 863 (1011)
++|+||+ |++|.+|++|+||+++++.|||||||+||.+.|+||+.+| .|+++|||||+
T Consensus 822 --~~p~gm~------------------i~ef~~i~s~~pg~~~~~~~~i~F~dst~~~~~~l~~~~g--~~~~~~pvge~ 879 (968)
T KOG1060|consen 822 --KLPAGMS------------------IKEFSPIESLPPGASASVVLGIDFCDSTQAAEWQLLTDDG--RVRFQPPVGEL 879 (968)
T ss_pred --ecccccc------------------ccccccccccCCCcceeeeeeeeccccccceeEEEEeccC--cEEecCchhhh
Confidence 3799994 9999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCCHHHHHHHhhcCCCCccccceeecccCcCcccccccchhhccchhhhhHHHHHHHhhhcccceeeecCcccccc
Q 001803 864 IKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAK 943 (1011)
Q Consensus 864 ~~p~~ms~~~f~~~~~~L~GM~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~ 943 (1011)
++|+.|++++|+||||+|+||||| .|.+.. ++..||++.||++
T Consensus 880 ~~~v~~~~~~~~~E~~~L~gln~~--~~~l~~-----------------------------~~~~an~~~~~~g------ 922 (968)
T KOG1060|consen 880 VQPVRMSEEDFKKERGKLGGLNEH--VIQLEN-----------------------------PNPSANVLFVPSG------ 922 (968)
T ss_pred hccccCCHHHHHhhhhhhcccchh--heeeec-----------------------------ccchhhhhcccCC------
Confidence 999999999999999999999999 444431 0558999999974
Q ss_pred cCCCCCCceeeeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHHh
Q 001803 944 FDDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFL 1004 (1011)
Q Consensus 944 ~~~~~~~~~rfa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~ 1004 (1011)
..+||||||+|+++|||+||++ + ||+|||||||||+||||+|.++|
T Consensus 923 ------~~~rFa~~tlss~~~~llT~~~--k-------~l~ince~~ViG~~ll~~~~~~~ 968 (968)
T KOG1060|consen 923 ------SSHRFAGQTLSSKSLVLLTVDE--K-------TLEINCEKTVIGSMLLNEVSNAL 968 (968)
T ss_pred ------cceeeeeeeccCCceEEEEeeh--h-------eeEecchhhhHHHHHHHHHHhhC
Confidence 3599999999999999999998 3 78999999999999999999975
No 2
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=4.2e-80 Score=747.55 Aligned_cols=447 Identities=25% Similarity=0.356 Sum_probs=387.2
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC-
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC- 78 (1011)
Q Consensus 1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc- 78 (1011)
||+||++.|+++++.+|++|+.|++|||||+||+|+.|+|+++|+. ....+.+.|.+||.|+||+|+++|+.+|.||+
T Consensus 129 Ls~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 129 MMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred HHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999953 34457788888999999999999999999997
Q ss_pred --CCcccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCC
Q 001803 79 --PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (1011)
Q Consensus 79 --P~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~ 156 (1011)
|++++++|+++++||+.|.+++||+|++||++|.+|.+..
T Consensus 209 ~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~-------------------------------------- 250 (746)
T PTZ00429 209 YGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSD-------------------------------------- 250 (746)
T ss_pred hCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCC--------------------------------------
Confidence 6678899999999999999999999999999999986411
Q ss_pred CccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC
Q 001803 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236 (1011)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~la 236 (1011)
+.+...+|+.+.|+|+|+|+||||+|+++++++.
T Consensus 251 ----------------------------------------------~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~ 284 (746)
T PTZ00429 251 ----------------------------------------------KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLA 284 (746)
T ss_pred ----------------------------------------------cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 1234678999999999999999999999999887
Q ss_pred C---HH----HHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCC
Q 001803 237 P---KE----DVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTES 309 (1011)
Q Consensus 237 p---~~----~l~~i~~pLv~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~ 309 (1011)
+ ++ .++++..||++|+++++|+||++|++|..|++.+|.+|.+|++.|||+++||.|||++||+||+.|||++
T Consensus 285 ~~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~ 364 (746)
T PTZ00429 285 SRCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPS 364 (746)
T ss_pred CcCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcc
Confidence 5 22 2456778999999889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHH
Q 001803 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (1011)
Q Consensus 310 Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Ll 389 (1011)
|+..|++||++|+.+.|.+|++++|+|||+||.|+|..++||+++|+++++. +.+ ++.|+|+++++|+
T Consensus 365 Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~-----------~~~-~v~e~i~vik~Il 432 (746)
T PTZ00429 365 VAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDR-----------RPE-LLPQVVTAAKDIV 432 (746)
T ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcC-----------Cch-hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999973 233 5779999999999
Q ss_pred hhCCcchHHHHHHHHHhh--hccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHh
Q 001803 390 KQDPSCHEKVIIQLFRSL--DSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVL 467 (1011)
Q Consensus 390 q~~P~~~~~ii~~L~~~L--d~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~ 467 (1011)
|+||+.+ ++..|++.+ +.+.+|.||++++|||||||+. ++. ++++||.++++|..|+.+||+|+||+++|+|
T Consensus 433 rkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~---I~~-a~~~L~~~i~~f~~E~~~VqlqlLta~vKlf 506 (746)
T PTZ00429 433 RKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF---IEN-GKDIIQRFIDTIMEHEQRVQLAILSAAVKMF 506 (746)
T ss_pred HHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh---Hhh-HHHHHHHHHhhhccCCHHHHHHHHHHHHHHH
Confidence 9999874 678888865 7899999999999999999964 454 7899999999999999999999999999999
Q ss_pred hhcCCCChHHHHHHHHHHHHHH-ccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHH-hhhccCCCCC
Q 001803 468 LCAKGGDMWTITRLFSYLLELA-ECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVE-CIFRKQENLA 545 (1011)
Q Consensus 468 ~~~p~e~~~~l~~L~qyVL~La-~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~-~lf~~~~p~~ 545 (1011)
+++|++. ..+++++|+.+ +++.||||||||+|||+||+.+.. ...|+ +++.++||.+
T Consensus 507 l~~p~~~----~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~-----------------~~~a~~iv~~~~~~i~ 565 (746)
T PTZ00429 507 LRDPQGM----EPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGIT-----------------VAQMKKVVHGQMVPVN 565 (746)
T ss_pred hcCcHHH----HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCc-----------------HHHHHHHHcCCCCCCC
Confidence 9999754 34566677544 677899999999999999987431 12344 4455666655
Q ss_pred CCCCCCcc------CcCCCcHHHHhhccCCC
Q 001803 546 ASEPINDR------FYLPGSLSQIVLHAAPG 570 (1011)
Q Consensus 546 ~~~~~~~r------~~~lGSLS~~~~~~~~g 570 (1011)
..+.+.+. ...+||||.+++++..-
T Consensus 566 ~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~ 596 (746)
T PTZ00429 566 VDSTFSDAMTMADLKKSLNTAAIVFARPYQS 596 (746)
T ss_pred cccccCCHHHHHHHHHhcCceeeeecCCHHH
Confidence 43333221 23478888887776543
No 3
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-69 Score=629.35 Aligned_cols=445 Identities=29% Similarity=0.456 Sum_probs=395.9
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC-
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC- 78 (1011)
Q Consensus 1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc- 78 (1011)
|++|||+.|+.+.+.++++|++|.+|||||+||.|+.|+|+.+++. ....+.+.++.|+.|.+|+|++||+.|+.||.
T Consensus 110 m~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 110 MGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE 189 (734)
T ss_pred eeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999954 56679999999999999999999999999996
Q ss_pred --CC--cccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCC
Q 001803 79 --PN--NFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI 154 (1011)
Q Consensus 79 --P~--r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~ 154 (1011)
|+ -..++|...++|++.|.+|+||||+.||+.|++|.+.+
T Consensus 190 ~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d------------------------------------ 233 (734)
T KOG1061|consen 190 SHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKD------------------------------------ 233 (734)
T ss_pred hCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCC------------------------------------
Confidence 42 35789999999999999999999999999999997421
Q ss_pred CCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh
Q 001803 155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI 234 (1011)
Q Consensus 155 ~~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~ 234 (1011)
+.++.-+++.+.|.|||.|++||+++.+++++
T Consensus 234 ------------------------------------------------~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 234 ------------------------------------------------SREAEDICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred ------------------------------------------------chhHHHHHHHhhhhhccCCcceEeehHHHHHH
Confidence 01345688999999999999999999999988
Q ss_pred cCCH------HHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCC
Q 001803 235 MSPK------EDVKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (1011)
Q Consensus 235 lap~------~~l~~i~~pLv~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane 308 (1011)
+.+. ..++++..||+.|+.+.++++|++|+||..+.+++|++|..+++.|||+|+||.|||..|||||+.||+.
T Consensus 266 ~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~ 345 (734)
T KOG1061|consen 266 LVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND 345 (734)
T ss_pred HHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH
Confidence 7642 3478899999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHH
Q 001803 309 SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (1011)
Q Consensus 309 ~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~L 388 (1011)
+|+.+|+.||..|+.+.|.+|++++|+|||+||.+++++ ..|++.|+++++. +.+++|+|++++|++|
T Consensus 346 ~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-~~cv~~lLell~~-----------~~~yvvqE~~vvi~di 413 (734)
T KOG1061|consen 346 ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-NDCVSILLELLET-----------KVDYVVQEAIVVIRDI 413 (734)
T ss_pred hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-hhhHHHHHHHHhh-----------cccceeeehhHHHHhh
Confidence 999999999999999999999999999999999999999 9999999999985 4568999999999999
Q ss_pred HhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhh
Q 001803 389 IKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLL 468 (1011)
Q Consensus 389 lq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~ 468 (1011)
+|+||..++.++..++..++++++|+||+++|||+|||++ .+|+ ++++||.|.++|.+|+.+||+++||+++|+|+
T Consensus 414 lRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~---~i~~-a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl 489 (734)
T KOG1061|consen 414 LRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAE---RIEN-ALELLESFLENFKDETAEVQLELLTAAIKLFL 489 (734)
T ss_pred hhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhh---ccCc-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999995 5666 68999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHccCC-ChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcchHHHHHhhhccCCCCCCC
Q 001803 469 CAKGGDMWTITRLFSYLLELAECDL-NYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENLAAS 547 (1011)
Q Consensus 469 ~~p~e~~~~l~~L~qyVL~La~~D~-n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~~~la~~lf~~~~p~~~~ 547 (1011)
++|.+. +.+++.+|.+|..|. |+|+||||.+|||+|+.+ ...|+.+..+++|....
T Consensus 490 ~~p~~t----q~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~-------------------~~~a~~v~~~~kP~is~ 546 (734)
T KOG1061|consen 490 KKPTET----QELLQGVLPLATADTDNPDLRDRGLIYWRLLSED-------------------PLIAKDVVLAEKPLISE 546 (734)
T ss_pred cCCccH----HHHHHHHHhhhhccccChhhhhhHHHHHHHhhcC-------------------HHHHHHHHhcCCCcccc
Confidence 999854 467888888899885 899999999999999843 24566665444444432
Q ss_pred CC--CC----cc-CcCCCcHHHHhhccC
Q 001803 548 EP--IN----DR-FYLPGSLSQIVLHAA 568 (1011)
Q Consensus 548 ~~--~~----~r-~~~lGSLS~~~~~~~ 568 (1011)
.+ .. ++ .-.+||||.++.++-
T Consensus 547 ~~~~~~p~~le~l~~~i~tlssVY~Kp~ 574 (734)
T KOG1061|consen 547 ETDSLDPTLLEELLCDIGTLSSVYHKPP 574 (734)
T ss_pred CCCCCCchHHHHHHHhhccccceeecCh
Confidence 11 11 12 345899999987644
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=3.4e-56 Score=525.74 Aligned_cols=413 Identities=29% Similarity=0.442 Sum_probs=366.3
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHH-HHHHHHHHhcCCChhHHHHHHHHHHHh-C
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASI-C 78 (1011)
Q Consensus 1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~-L~eil~~LL~D~dp~VvgsAv~Af~EI-c 78 (1011)
||+|+.++++|.++..|.+++.|++|||||+||+|+.|+|+.+|+. .+. +.+.+.+||.|++|.|+++|+.++.+| +
T Consensus 103 l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~ 181 (526)
T PF01602_consen 103 LSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-VEDELIPKLKQLLSDKDPSVVSAALSLLSEIKC 181 (526)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHC
T ss_pred hhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-HHHHHHHHHhhhccCCcchhHHHHHHHHHHHcc
Confidence 4789999999999999999999999999999999999999999943 333 899999999999999999999999999 8
Q ss_pred CCcc--cchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCC
Q 001803 79 PNNF--TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPS 156 (1011)
Q Consensus 79 P~r~--dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~ 156 (1011)
+++. .++|+.+++||+++...+||+|+.+|++|.+|++... .
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~-----~------------------------------- 225 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP-----E------------------------------- 225 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH-----H-------------------------------
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh-----h-------------------------------
Confidence 8876 8999999999999999999999999999999985210 0
Q ss_pred CccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC
Q 001803 157 RTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS 236 (1011)
Q Consensus 157 ~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~la 236 (1011)
+++...+++.+.++|++.|++|+++|+++++++.
T Consensus 226 ----------------------------------------------~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 226 ----------------------------------------------DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLS 259 (526)
T ss_dssp ----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ----------------------------------------------hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence 0011457888999999999999999999999998
Q ss_pred CHHH-HHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhC-CccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHH
Q 001803 237 PKED-VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS 313 (1011)
Q Consensus 237 p~~~-l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~-p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~ 313 (1011)
+... +..++.+|++||.+ ++|+||++|++|..|+..+ +.++..++..|+++++|+.+||++||++|+.|++++|+..
T Consensus 260 ~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~ 339 (526)
T PF01602_consen 260 PSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKE 339 (526)
T ss_dssp SSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHH
T ss_pred cchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccchhh
Confidence 8655 78999999999986 5789999999999999999 6778778888999989999999999999999999999999
Q ss_pred HHHHHHHhhccC-ChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhC
Q 001803 314 VFKEFQDYIRDP-DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1011)
Q Consensus 314 IL~EL~~Yv~~~-D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~ 392 (1011)
|++||..|+++. |.+|+++++++|+.||.+++....||++++++++.. +++++..+++..|+++++++
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~-----------~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEI-----------SGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHC-----------TGGGCHCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhh-----------ccccccchHHHHHHHHhhcC
Confidence 999999999655 888999999999999999999999999999999984 34567888899999999999
Q ss_pred CcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCC
Q 001803 393 PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (1011)
Q Consensus 393 P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~ 472 (1011)
|+.+..++.+|++.++++.+|.++++++|++|||++..+... .++++++.++++|..|+..||+++|++++|++.+.|.
T Consensus 409 ~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~ 487 (526)
T PF01602_consen 409 PELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE 487 (526)
T ss_dssp TTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999999999999997543312 6899999999999999999999999999999999986
Q ss_pred CChHHHHHHHHHHHHHHccC-CChHHHhHHHHHHHHccC
Q 001803 473 GDMWTITRLFSYLLELAECD-LNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 473 e~~~~l~~L~qyVL~La~~D-~n~DVRDRAr~y~~LL~~ 510 (1011)
.. ....++++++.++++| .|+||||||+||++||..
T Consensus 488 ~~--~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 488 NE--VQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp TT--HHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred hh--hHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 43 3347888888888864 599999999999999964
No 5
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=3e-45 Score=436.48 Aligned_cols=409 Identities=23% Similarity=0.352 Sum_probs=339.6
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHH-HHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-IEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1011)
Q Consensus 1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~-L~eil~~LL~D~dp~VvgsAv~Af~EIcP 79 (1011)
||.||+++++++++.+|++|++|++|||||+||+||.|+|++|++.-.+. +++++..|+.|.||.|+++|+.+|.+|+|
T Consensus 116 ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 116 LSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 68999999999999999999999999999999999999999999654444 88889999999999999999999999999
Q ss_pred CcccchHHHHHHHHHhCCCCC--------hhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCccccccccccccc
Q 001803 80 NNFTLIGRNYRNLCQILPDVE--------EWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALED 151 (1011)
Q Consensus 80 ~r~dLihk~yrkLc~~L~d~d--------EWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~ 151 (1011)
+ +.|++++..|..+..++ ||.+..+++.|+.|.+++
T Consensus 196 e---~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~--------------------------------- 239 (757)
T COG5096 196 E---LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTT--------------------------------- 239 (757)
T ss_pred h---hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCC---------------------------------
Confidence 9 78889999999998866 777788888887776421
Q ss_pred CCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHH
Q 001803 152 NGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGV 231 (1011)
Q Consensus 152 q~~~~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l 231 (1011)
.| ++..+...+.|.+|+.|++|++.+++.
T Consensus 240 --------------------------------------------------~~-s~~~~~~~~~~~~~~~n~~vl~~av~~ 268 (757)
T COG5096 240 --------------------------------------------------PD-SAEDFEERLSPPLQHNNAEVLLIAVKV 268 (757)
T ss_pred --------------------------------------------------CC-cHHHHHHhccchhhhCcHHHHHHHHHH
Confidence 01 234567788899999999999999999
Q ss_pred HHhcCCH----HHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhc
Q 001803 232 HWIMSPK----EDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIV 306 (1011)
Q Consensus 232 ~~~lap~----~~l~~i~~pLv~LL~s~-~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~La 306 (1011)
.+.+.+. ........+|+.|+..+ ..++||.+.++..+...+|.+|..-.+.||++++||.|++..|+++++.++
T Consensus 269 i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~ 348 (757)
T COG5096 269 ILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLA 348 (757)
T ss_pred HHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcC
Confidence 8877653 23556667888888776 789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcc--CChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhH---
Q 001803 307 TESSISSVFKEFQDYIRD--PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQS--- 381 (1011)
Q Consensus 307 ne~Nv~~IL~EL~~Yv~~--~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~--- 381 (1011)
+..|..+++-|+.+|+.+ .|.+++.++|++||.+|.+.+.....|++.++.+++ +.+ -+.++++.|+
T Consensus 349 ~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~------g~~--~~~~Yi~~e~~~~ 420 (757)
T COG5096 349 DDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLE------GVW--IRGSYIVQEVRIV 420 (757)
T ss_pred CchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcc------chh--hccchhhhhhccc
Confidence 999999999999999998 899999999999999999999999999999999987 111 1234666665
Q ss_pred --HHHHH---HHHhhCCcc-hHHHHHHHHHhhhccC----chhHHHHh-----hhhhccccCCCCCccccHHHHHHHHHH
Q 001803 382 --IISIK---SIIKQDPSC-HEKVIIQLFRSLDSIK----VPEARVMI-----IWMVGEYSSVGVKIPRMLTTVLKYLAW 446 (1011)
Q Consensus 382 --V~vIk---~Llq~~P~~-~~~ii~~L~~~Ld~I~----~p~ArAsI-----iWLIGEY~~~~e~ip~ia~dvLR~l~k 446 (1011)
|.+++ .+++.+|+. ....+..+++..+.++ .|.+|.+. +||+|||++ .+|+..|+++|.+..
T Consensus 421 ~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~~e~l~~~~~~P~~k~~~~~~~~~wl~ge~~~---~i~r~~~~~l~~~~~ 497 (757)
T COG5096 421 DCISVIRISVLVLRILPNEYPKILLRGLYALEETLELQSREPRAKSVTDKYLGAWLLGEFSD---IIPRLEPELLRIAIS 497 (757)
T ss_pred ceeeeeehhcchhhhcCCcchhhhHHHHHHHHHHhhccccCcHHHHHHhhhhHHHhHHHHHH---HHhhhhHHHHHHHHH
Confidence 44554 567777665 3333444455445554 79988888 999999996 467788999999999
Q ss_pred hhccChHHHHHHHHHHHHHHhhhcCCCChH----HHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 001803 447 CFKSEAVETKLQILNTTIKVLLCAKGGDMW----TITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 447 ~F~~E~~~VKlqILta~aKL~~~~p~e~~~----~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~ 510 (1011)
+|..|+.+||.+||++.+|+++..+....+ .-..+.+++++ +-.++|+||||+||++++..
T Consensus 498 ~~~~E~levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~---~v~~~DlRDra~my~~~lst 562 (757)
T COG5096 498 NFVDETLEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFD---YVLVPDLRDRARMYSRLLST 562 (757)
T ss_pred HhcccchHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHh---ccCChhHHHHHHHHHHHhcC
Confidence 999999999999999999999998753221 11123333332 33588999999999999984
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-39 Score=376.17 Aligned_cols=454 Identities=17% Similarity=0.214 Sum_probs=343.0
Q ss_pred CCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc
Q 001803 2 AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1011)
Q Consensus 2 ssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r 81 (1011)
|.|--|++++-+.+-|.+.+..++|||||+|++|..|+++..| +..+.++.--.+||+|++++|+++++..+.|+|...
T Consensus 132 g~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~ 210 (866)
T KOG1062|consen 132 GNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS 210 (866)
T ss_pred hccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC
Confidence 4566689999999999999999999999999999999999999 777888888889999999999999999999999664
Q ss_pred ccc---hHHHHHHHHHhCCC---------------CChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCccccc
Q 001803 82 FTL---IGRNYRNLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVF 143 (1011)
Q Consensus 82 ~dL---ihk~yrkLc~~L~d---------------~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~ 143 (1011)
.+. ..+..+.|+.+|++ .|||.||.||++|.-|.+.. +. ..|.|
T Consensus 211 ~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d-----~d-------------aSd~M 272 (866)
T KOG1062|consen 211 PDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND-----AD-------------ASDLM 272 (866)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC-----cc-------------HHHHH
Confidence 333 33334444455543 69999999999999998532 10 00111
Q ss_pred ccccccccCCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChH
Q 001803 144 DVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSA 223 (1011)
Q Consensus 144 ~~~~~l~~q~~~~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsA 223 (1011)
+ |+.+|. .+.+.. =...+.|
T Consensus 273 ~---DiLaqv--------------------------------------------------------atntds-skN~GnA 292 (866)
T KOG1062|consen 273 N---DILAQV--------------------------------------------------------ATNTDS-SKNAGNA 292 (866)
T ss_pred H---HHHHHH--------------------------------------------------------Hhcccc-cccchhH
Confidence 0 111111 111111 0123469
Q ss_pred HHHHHHHHHHhcCCHHHHHH-HHHHHHHHh-ccCCcchHHHHHHHHHHHHhCCccccccccceeeccCCc-HHHHHHHHH
Q 001803 224 VVLAAAGVHWIMSPKEDVKR-IVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLE 300 (1011)
Q Consensus 224 VVlaaa~l~~~lap~~~l~~-i~~pLv~LL-~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp-~~IK~lKLe 300 (1011)
+.++|+++++.+.+...++. +++.|-++| ++++|+|||+|+.+...++..|...+.|.....-|..|| ..||+++||
T Consensus 293 ILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralE 372 (866)
T KOG1062|consen 293 ILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALE 372 (866)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999998776655 557776655 568999999999999999999999999988777778887 689999999
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhh
Q 001803 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQ 380 (1011)
Q Consensus 301 IL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E 380 (1011)
++|.|+|++||..+++||.+|+...|.+|+...+..|..+|++|++...|.++++++.++. ++.+|=.+
T Consensus 373 Ls~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~-----------aG~~V~~d 441 (866)
T KOG1062|consen 373 LSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKT-----------AGDFVNDD 441 (866)
T ss_pred HHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh-----------cccccchh
Confidence 9999999999999999999999999999999999999999999999999999999999984 23333334
Q ss_pred HHHHHHHHHhhC-CcchHHHHHHHHHhhhc-----cCchhHHHHhhhhhccccCCCC---------C-ccccHHHHHHHH
Q 001803 381 SIISIKSIIKQD-PSCHEKVIIQLFRSLDS-----IKVPEARVMIIWMVGEYSSVGV---------K-IPRMLTTVLKYL 444 (1011)
Q Consensus 381 ~V~vIk~Llq~~-P~~~~~ii~~L~~~Ld~-----I~~p~ArAsIiWLIGEY~~~~e---------~-ip~ia~dvLR~l 444 (1011)
.+..+-+||-.- ++.|++.+.+|...+.. +..+.....++|+|||||++.- . .+.-+-|++..+
T Consensus 442 v~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v 521 (866)
T KOG1062|consen 442 VVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKV 521 (866)
T ss_pred hHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHH
Confidence 455666777776 88899999999876642 5555556667999999996421 0 111234555555
Q ss_pred HHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhh
Q 001803 445 AWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQ 524 (1011)
Q Consensus 445 ~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~ 524 (1011)
..++.. +..+|.++|++++||..+.+.. .++++++. .--+-+.|.|+|+||.+|..|+...
T Consensus 522 ~~~~~s-~~~tk~yal~Al~KLSsr~~s~-~~ri~~lI----~~~~~s~~~elQQRa~E~~~l~~~~------------- 582 (866)
T KOG1062|consen 522 LMSHSS-DSTTKGYALTALLKLSSRFHSS-SERIKQLI----SSYKSSLDTELQQRAVEYNALFAKD------------- 582 (866)
T ss_pred HHhccc-hHHHHHHHHHHHHHHHhhcccc-HHHHHHHH----HHhcccccHHHHHHHHHHHHHHHHH-------------
Confidence 555544 4899999999999999999864 34555543 2335667999999999999999642
Q ss_pred ccCcchHHHHHhhhccCCCCCCCCCCCccCcCCCcHHHHhhccCCCCcc
Q 001803 525 ENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAPGYEP 573 (1011)
Q Consensus 525 ~~~~~~~~la~~lf~~~~p~~~~~~~~~r~~~lGSLS~~~~~~~~gY~~ 573 (1011)
.++.+.|+..+|.... .....+. =|.....+...+.+|.+
T Consensus 583 ------~~lr~siLe~mp~~e~-~~~~~~~--~g~~~~~i~~~~~p~~~ 622 (866)
T KOG1062|consen 583 ------KHLRKSILERMPSCED-ITVDARL--DGNGPAAIEQGAEPYKS 622 (866)
T ss_pred ------HHHHHHhcccCccccc-ccccccc--ccchHHHHHhccCCCcc
Confidence 2455667766654432 1222222 37777777777776665
No 7
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-36 Score=347.59 Aligned_cols=429 Identities=17% Similarity=0.220 Sum_probs=328.8
Q ss_pred hhhhHHHHHHHHhhc--CCCChhhHHHHHHHHHHHhccChhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---CC
Q 001803 7 HVISPLVLVAVGKCA--RDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PN 80 (1011)
Q Consensus 7 p~I~piv~~aIkk~l--~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc---P~ 80 (1011)
.++.+-+-.-|.|.+ .+..+||||.||+|+.++|+..|+. ....|.+.|-.||+|.+-+|+.||...+.-+| |+
T Consensus 141 re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 141 REMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 344445555555654 4678999999999999999999954 55578888889999999999999988877776 43
Q ss_pred cc-cchHHHHHHHHHhCCC-------------CChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccc
Q 001803 81 NF-TLIGRNYRNLCQILPD-------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVN 146 (1011)
Q Consensus 81 r~-dLihk~yrkLc~~L~d-------------~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~ 146 (1011)
.+ ..+.+++.+|.++... ..+|.|+.++++|..|.+.+ ||+
T Consensus 221 ~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~----D~~--------------------- 275 (938)
T KOG1077|consen 221 SYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPE----DPS--------------------- 275 (938)
T ss_pred HHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCC----Cch---------------------
Confidence 33 2345566666655532 48999999999999995321 110
Q ss_pred cccccCCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhh-----hhccCCC
Q 001803 147 VALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS-----PLLWSHN 221 (1011)
Q Consensus 147 ~~l~~q~~~~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~-----pLLqS~N 221 (1011)
+.. + +.+-+..+|+... .-.|++|
T Consensus 276 --------------~r~------~-------------------------------l~evl~~iLnk~~~~~~~k~vq~~n 304 (938)
T KOG1077|consen 276 --------------TRA------R-------------------------------LNEVLERILNKAQEPPKSKKVQHSN 304 (938)
T ss_pred --------------HHH------H-------------------------------HHHHHHHHHhccccCccccchHhhh
Confidence 000 0 0000111111111 1135666
Q ss_pred h--HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCC--ccccccccceeecc-CCc-HH
Q 001803 222 S--AVVLAAAGVHWIMSP-KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--HLFVPHYEDFFVSS-SDS-YQ 293 (1011)
Q Consensus 222 s--AVVlaaa~l~~~lap-~~~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p--~lF~~~l~~Ffv~~-~Dp-~~ 293 (1011)
+ ||.++++++.+|+.+ ++.+.+++..|..+|.. .+|+||++|.++..|+...+ +....|....+-.. +++ ..
T Consensus 305 a~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvS 384 (938)
T KOG1077|consen 305 AKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVS 384 (938)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchH
Confidence 4 999999999999987 56689999999999875 79999999999999988755 34556765555332 343 68
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCC
Q 001803 294 SKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNG 373 (1011)
Q Consensus 294 IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~ 373 (1011)
||++.+|+||.+|+.+|++.|+.||+.|+...|..++.+.+-+++.+|+||+.+..|++++.++||+.. |+. +.
T Consensus 385 irrravDLLY~mcD~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiria---gd~---vs 458 (938)
T KOG1077|consen 385 IRRRAVDLLYAMCDVSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIA---GDY---VS 458 (938)
T ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHh---ccc---cc
Confidence 999999999999999999999999999999999999999999999999999999999999999999852 221 12
Q ss_pred CCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhc--cCchhHHHHhhhhhccccCCCCCcccc-HHHHHHHHHHhhcc
Q 001803 374 EADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRM-LTTVLKYLAWCFKS 450 (1011)
Q Consensus 374 ~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~--I~~p~ArAsIiWLIGEY~~~~e~ip~i-a~dvLR~l~k~F~~ 450 (1011)
++ ||. ++++|+.++++.|..+++++.+++.. +.+.+.|++ .+|+||||+++..-|.+ +...|..+..+|..
T Consensus 459 de--VW~---RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvg-gyiLGEfg~LIa~~prss~~~qFsllh~K~~~ 532 (938)
T KOG1077|consen 459 DE--VWY---RVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVG-GYILGEFGNLIADDPRSSPAVQFSLLHEKLHL 532 (938)
T ss_pred HH--HHH---HhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhh-hhhhhhhhhhhcCCCCCChHHHHHHHHHHhcc
Confidence 22 666 56789999999999999999999976 456778887 89999999987655554 45668899999999
Q ss_pred ChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCCCCCCccchhhhhccCcch
Q 001803 451 EAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLP 530 (1011)
Q Consensus 451 E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~~~~ 530 (1011)
.+..+|..+|++.+|++...|+ ++.-.+.||++...-.|+|+|+||.+|.+|..... .|
T Consensus 533 ~s~~tr~lLLtTyiKl~nl~PE-----i~~~v~~vFq~~~n~~D~ElQqRa~EYLql~k~as--------------~d-- 591 (938)
T KOG1077|consen 533 CSPVTRALLLTTYIKLINLFPE-----IKSNVQKVFQLYSNLIDVELQQRAVEYLQLSKLAS--------------TD-- 591 (938)
T ss_pred CChhHHHHHHHHHHHHHhhChh-----hhHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcc--------------ch--
Confidence 9999999999999999999986 33445556665445579999999999999997641 12
Q ss_pred HHHHHhhhccCCCCCC
Q 001803 531 LVLVECIFRKQENLAA 546 (1011)
Q Consensus 531 ~~la~~lf~~~~p~~~ 546 (1011)
.-..+|.++|||+.
T Consensus 592 --vL~~vleeMPpF~e 605 (938)
T KOG1077|consen 592 --VLQTVLEEMPPFPE 605 (938)
T ss_pred --HHHHHHhhCCCCcc
Confidence 22467889999986
No 8
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=100.00 E-value=5.7e-35 Score=288.62 Aligned_cols=132 Identities=30% Similarity=0.366 Sum_probs=107.3
Q ss_pred hhccccccCCCC----CCC---CCCchhhhhhhcc-----ccceeeccccccccCcceecccccCCCCeeEEEEecCCCC
Q 001803 686 KRALESWLDEQP----GSS---SPSASEQIQVRQS-----SARISIGNIGRQVKAKSYTLLDPANGNGLKVYYSFSSEAS 753 (1011)
Q Consensus 686 ~~~~~~~ld~~~----~~~---~~~~~~~~~~~~s-----~~~~~~~~~~~~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~ 753 (1011)
|++++++||.++ +.. .++|++...+... +...++..+ .++++|+||||||++|+||+|+|||+||||
T Consensus 2 k~~~~~LLDLddf~~p~~~P~~~~spsl~~~L~~ls~s~~~~~~~~~~p-s~v~~k~~eLL~~v~G~GL~v~Y~F~RqP~ 80 (145)
T PF14796_consen 2 KSKEDSLLDLDDFAVPPVAPVSILSPSLGSDLEGLSLSDSSSVPSVVSP-SFVPPKKYELLNRVNGKGLSVEYRFSRQPS 80 (145)
T ss_pred CcccccccccccccCCCcCCccccCcchhhhccCCCcCcccccccccCC-cccCcceEEeeeccCCCceeEEEEEccCCc
Confidence 345677777643 222 2556654433322 122222222 268999999999999999999999999999
Q ss_pred CCCCCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEe
Q 001803 754 TISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 833 (1011)
Q Consensus 754 ~~~~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgid 833 (1011)
+||++||||||+|+|+|+++|+||||++| ++++||+ |++|++|++|+||++++++||||
T Consensus 81 ~~s~~mvsIql~ftN~s~~~i~~I~i~~k---~l~~g~~------------------i~~F~~I~~L~pg~s~t~~lgID 139 (145)
T PF14796_consen 81 LYSPSMVSIQLTFTNNSDEPIKNIHIGEK---KLPAGMR------------------IHEFPEIESLEPGASVTVSLGID 139 (145)
T ss_pred CCCCCcEEEEEEEEecCCCeecceEECCC---CCCCCcE------------------eeccCcccccCCCCeEEEEEEEe
Confidence 99999999999999999999999999999 4899984 99999999999999999999999
Q ss_pred cCCCCc
Q 001803 834 FHHHLL 839 (1011)
Q Consensus 834 F~~~~~ 839 (1011)
|||+||
T Consensus 140 F~DStQ 145 (145)
T PF14796_consen 140 FNDSTQ 145 (145)
T ss_pred cccCCC
Confidence 999998
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=269.82 Aligned_cols=325 Identities=18% Similarity=0.305 Sum_probs=271.7
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh--hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~--~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
+|-+|-|++++.+|++|+.|+.++++||||.|.+||.-+|+..... +.++|++ ..|+.+.||.+..+|++.+..+.
T Consensus 123 LckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~--~fL~~e~DpsCkRNAFi~L~~~D 200 (948)
T KOG1058|consen 123 LCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIE--SFLLTEQDPSCKRNAFLMLFTTD 200 (948)
T ss_pred hhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHH--HHHHhccCchhHHHHHHHHHhcC
Confidence 4778999999999999999999999999999999999999873211 3445554 45788999999999999999999
Q ss_pred CCcccchHHHHHHHHHhCCCCChhh---HHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCC
Q 001803 79 PNNFTLIGRNYRNLCQILPDVEEWG---QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIP 155 (1011)
Q Consensus 79 P~r~dLihk~yrkLc~~L~d~dEWg---Qv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~ 155 (1011)
|+| +..+|...+.++..|| |.+|++++..-+.+. |.
T Consensus 201 ~Er------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~-----p~------------------------------ 239 (948)
T KOG1058|consen 201 PER------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN-----PA------------------------------ 239 (948)
T ss_pred HHH------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC-----HH------------------------------
Confidence 997 5667777776666555 889998887665311 10
Q ss_pred CCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc
Q 001803 156 SRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM 235 (1011)
Q Consensus 156 ~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l 235 (1011)
.-..+++++..+|++.++||+++|+-....+
T Consensus 240 -------------------------------------------------~~~~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 240 -------------------------------------------------EKARYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred -------------------------------------------------HhhHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 0135789999999999999999999998888
Q ss_pred CC-HHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHHHhCCccccccccceee-ccCCcHHHHHHHHHHHHhhcCCCCH
Q 001803 236 SP-KEDVKRIVKPLLFILR--SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFV-SSSDSYQSKALKLEILSSIVTESSI 311 (1011)
Q Consensus 236 ap-~~~l~~i~~pLv~LL~--s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv-~~~Dp~~IK~lKLeIL~~Lane~Nv 311 (1011)
++ +..++.++..++.|+- +++|++.++|+.|..+...+.++|+.+..+|.- ...-...+|++.|+|...|++..|+
T Consensus 271 S~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv 350 (948)
T KOG1058|consen 271 SNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV 350 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH
Confidence 76 6779999999999985 579999999999999998888999998877763 3344468999999999999999999
Q ss_pred HHHHHHHHHhhcc-----C--ChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHH
Q 001803 312 SSVFKEFQDYIRD-----P--DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (1011)
Q Consensus 312 ~~IL~EL~~Yv~~-----~--D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~v 384 (1011)
.+|+.-|+.-+.. . +..|++..|++|..||.+||+++..++..|+++|+. .++.....++..
T Consensus 351 ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD-----------~N~~aas~vl~F 419 (948)
T KOG1058|consen 351 EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISD-----------SNEAAASDVLMF 419 (948)
T ss_pred HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhcc-----------CCHHHHHHHHHH
Confidence 9999877764421 1 236999999999999999999999999999999973 223334556678
Q ss_pred HHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccC
Q 001803 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS 428 (1011)
Q Consensus 385 Ik~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~ 428 (1011)
++..++++|+.+..++.+|.+.+..|..+.+-.+.+|++||||.
T Consensus 420 vrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 420 VREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence 99999999999999999999999999999988888999999995
No 10
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-22 Score=235.17 Aligned_cols=406 Identities=17% Similarity=0.228 Sum_probs=291.7
Q ss_pred CCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---
Q 001803 2 AGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--- 78 (1011)
Q Consensus 2 ssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc--- 78 (1011)
|+|--|.+.-=+..-|-..++..-|||||.|+..+.|+|-..|+..++.+-.+.++ |.|.||+|++|||.+++|+.
T Consensus 134 S~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~Ek-LeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 134 SCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEK-LEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred ccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHh-ccCCCchHHHHHHHHHHHHHhhC
Confidence 44445666666667788899999999999999999999999996677777766555 88999999999999999995
Q ss_pred CCcccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001803 79 PNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1011)
Q Consensus 79 P~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (1011)
|.++=-+.+.|.+|+- ..-+.|--+.||.+++...+-. |- |.
T Consensus 213 PknyL~LAP~ffkllt--tSsNNWmLIKiiKLF~aLtplE-----PR-----------------------Lg-------- 254 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLV--TSSNNWVLIKLLKLFAALTPLE-----PR-----------------------LG-------- 254 (877)
T ss_pred CcccccccHHHHHHHh--ccCCCeehHHHHHHHhhccccC-----ch-----------------------hh--------
Confidence 6666567788888854 5679999999999988776411 10 00
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCCh-HHHHHHHHHHHhc--
Q 001803 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNS-AVVLAAAGVHWIM-- 235 (1011)
Q Consensus 159 ~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~Ns-AVVlaaa~l~~~l-- 235 (1011)
..||..+-.|+.|..+ +++++|+++....
T Consensus 255 ------------------------------------------------KKLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 255 ------------------------------------------------KKLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred ------------------------------------------------hhhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 1133333333444443 6899999987654
Q ss_pred ---CC--HHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHhCCccccccccceeeccCC-cHHHHHHHHHHHHhhcCC
Q 001803 236 ---SP--KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSD-SYQSKALKLEILSSIVTE 308 (1011)
Q Consensus 236 ---ap--~~~l~~i~~pLv~LL~-s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~D-p~~IK~lKLeIL~~Lane 308 (1011)
.| ...++-++.-|-.|+. +++|.+|++|-++.+|+..+|...+.|-....-+.+| +..||.++||+|+.++++
T Consensus 287 s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 287 SSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred ccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 12 2346777877766664 6899999999999999999999999997655544444 578999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCh-hHHHHHH-HHHHHHHhh-C--cccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHH
Q 001803 309 SSISSVFKEFQDYIRDPDR-RFAADTV-AAIGLCARK-L--PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII 383 (1011)
Q Consensus 309 ~Nv~~IL~EL~~Yv~~~D~-efv~~aI-~AIG~~A~k-~--p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~ 383 (1011)
.|+..|++-|..|+...+. .|+-+.+ +-|+.|+.. | =...+|++.+|++|.+.+. . .. ...+.|
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~----~---~~-G~~I~e--- 435 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG----T---RH-GSLIAE--- 435 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc----c---ch-hhHHHH---
Confidence 9999999999999987776 6887777 677888653 3 3567899999999987542 1 11 123444
Q ss_pred HHHHHHhhCCcchHHHHHHHHHhhhc------cC----chhHHHHhhhhhccccCCCCCccccHHHHHHHHHHh-hccCh
Q 001803 384 SIKSIIKQDPSCHEKVIIQLFRSLDS------IK----VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC-FKSEA 452 (1011)
Q Consensus 384 vIk~Llq~~P~~~~~ii~~L~~~Ld~------I~----~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~-F~~E~ 452 (1011)
.|.++-.+-|..+...+..+..++++ .+ -+...-+.+|++|||+...+. ..++|..|.+. +...+
T Consensus 436 Qi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven----~~~~leamlrpr~~~lp 511 (877)
T KOG1059|consen 436 QIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN----PNDTLEAMLRPRSDLLP 511 (877)
T ss_pred HHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC----HHHHHHHHhcCccccCc
Confidence 35566667788777888888888772 21 244555679999999965432 34677766653 44667
Q ss_pred HHHHHHHHHHHHHHhhhc-----CCCChHHHHHHHHHHHH-HH--ccCCChHHHhHHHHHHHHcc
Q 001803 453 VETKLQILNTTIKVLLCA-----KGGDMWTITRLFSYLLE-LA--ECDLNYDVRDRARFFKKLFS 509 (1011)
Q Consensus 453 ~~VKlqILta~aKL~~~~-----p~e~~~~l~~L~qyVL~-La--~~D~n~DVRDRAr~y~~LL~ 509 (1011)
.-++.-.+..++|+|+.- |..+.+-+-.|.+.++. +. .+..+.+||.||-....|+.
T Consensus 512 ~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~ 576 (877)
T KOG1059|consen 512 GHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIR 576 (877)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHH
Confidence 788888888999998753 22222223333343332 22 34569999999555554443
No 11
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.4e-17 Score=194.16 Aligned_cols=408 Identities=19% Similarity=0.222 Sum_probs=300.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC------cc---
Q 001803 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN------NF--- 82 (1011)
Q Consensus 12 iv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~------r~--- 82 (1011)
++...+.|-++-..+.+|-.|.-++.++ +|- .....+.+++++.+-|+++.|-.+|+..=..+.|. ||
T Consensus 100 ivtsslmkD~t~~~d~yr~~AiR~L~~I--~d~-~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~ne 176 (865)
T KOG1078|consen 100 IVTSSLMKDMTGKEDLYRAAAIRALCSI--IDG-TMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANE 176 (865)
T ss_pred hhhHHHHhhccCCCcchhHHHHHHHHhh--cCc-chhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHh
Confidence 4556677777778888886666666543 333 55667888999999999999999988765554442 22
Q ss_pred ---------cchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCC
Q 001803 83 ---------TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNG 153 (1011)
Q Consensus 83 ---------dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~ 153 (1011)
.+.+.|.+.|+..+.+-|--.-..+++.+++-. .-+|- ..+. +..+
T Consensus 177 iqea~~s~~~m~QyHalglLyqirk~drla~sklv~~~~~~~-----~~~~~---A~~~----------------lir~- 231 (865)
T KOG1078|consen 177 VQEAVNSDNIMVQYHALGLLYQIRKNDRLAVSKLVQKFTRGS-----LKSPL---AVCM----------------LIRI- 231 (865)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc-----ccchh---HHHH----------------HHHH-
Confidence 234567778888777777666666666555511 00110 0000 0000
Q ss_pred CCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH
Q 001803 154 IPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW 233 (1011)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~ 233 (1011)
..+ .+ +.+ ...+. -+.+-+..+|.|..-.|++++|+...
T Consensus 232 -------------~~~--------~l----~~~-------------~~~~s---~~~~fl~s~l~~K~emV~~EaArai~ 270 (865)
T KOG1078|consen 232 -------------ASE--------LL----KEN-------------QQADS---PLFPFLESCLRHKSEMVIYEAARAIV 270 (865)
T ss_pred -------------HHH--------Hh----hhc-------------ccchh---hHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 000 00 000 00111 24455566788999999999999988
Q ss_pred hcCC--HHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHhCCcccc---ccccceeeccCCc-HHHHHHHHHHHHhhc
Q 001803 234 IMSP--KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFV---PHYEDFFVSSSDS-YQSKALKLEILSSIV 306 (1011)
Q Consensus 234 ~lap--~~~l~~i~~pLv~LL~s~-~eiqYvvL~~I~~i~~~~p~lF~---~~l~~Ffv~~~Dp-~~IK~lKLeIL~~La 306 (1011)
.+.. ...+..++..|-.++.++ +-.||.+++.|.+++..+|+... ..+..+ -+|+ ..|..+|+-.|++-.
T Consensus 271 ~l~~~~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~l---Itd~NrsIat~AITtLLKTG 347 (865)
T KOG1078|consen 271 SLPNTNSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESL---ITDSNRSIATLAITTLLKTG 347 (865)
T ss_pred hccccCHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhh---hcccccchhHHHHHHHHHhc
Confidence 7753 455666777777777774 67899999999999999997654 344444 3665 589999999999999
Q ss_pred CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHH
Q 001803 307 TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIK 386 (1011)
Q Consensus 307 ne~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk 386 (1011)
+++|+..+++.+-.|+.+.+++|+.-.|+||..+..+||......+++|-++|+++ |+. .+....|.+|-
T Consensus 348 ~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~e---Gg~-------e~K~aivd~Ii 417 (865)
T KOG1078|consen 348 TESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREE---GGF-------EFKRAIVDAII 417 (865)
T ss_pred chhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhc---cCc-------hHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999863 222 23344455777
Q ss_pred HHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Q 001803 387 SIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (1011)
Q Consensus 387 ~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL 466 (1011)
.++.-+|+..+..+.+||..++++..+..-.-|+.++|.-|-. .|. ...+.|+++++..-|...||...+++++|+
T Consensus 418 ~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~---a~~-Pskyir~iyNRviLEn~ivRaaAv~alaKf 493 (865)
T KOG1078|consen 418 DIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPK---APN-PSKYIRFIYNRVILENAIVRAAAVSALAKF 493 (865)
T ss_pred HHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCC---CCC-cchhhHHHhhhhhhhhhhhHHHHHHHHHHH
Confidence 8888999999999999999999999888878899999998843 232 346889999999999999999999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 001803 467 LLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 467 ~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~ 510 (1011)
....+.... .+.-+ |..|.+|.|.+|||||+||.+.+..
T Consensus 494 g~~~~~l~~-sI~vl----lkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 494 GAQDVVLLP-SILVL----LKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hcCCCCccc-cHHHH----HHHHhcCchHHHHHHHHHHHHHhhh
Confidence 965544222 23333 4456699999999999999999873
No 12
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=99.75 E-value=4.3e-16 Score=177.73 Aligned_cols=276 Identities=17% Similarity=0.174 Sum_probs=227.7
Q ss_pred hhccCCChHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHHHhCCcccc---ccccceee
Q 001803 215 PLLWSHNSAVVLAAAGVHWIMSP----KEDVKRIVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFV---PHYEDFFV 286 (1011)
Q Consensus 215 pLLqS~NsAVVlaaa~l~~~lap----~~~l~~i~~pLv~LL~s~-~eiqYvvL~~I~~i~~~~p~lF~---~~l~~Ffv 286 (1011)
..|.+....|.|++|++.+.++. ++.+...+..|-.+|.++ .-.||.+++.|..|+..+|+... +.+.+.
T Consensus 271 ~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsL-- 348 (898)
T COG5240 271 SWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESL-- 348 (898)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHH--
Confidence 34456668999999999887654 356788888898888875 46899999999999999997554 444443
Q ss_pred ccCCc-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhcc
Q 001803 287 SSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLT 365 (1011)
Q Consensus 287 ~~~Dp-~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~ 365 (1011)
-+|. ..|...++.-|.+-.|++|+..+++.+-.|+.|..+.|+.-+|.||..+..+||.....++++|...|.++
T Consensus 349 -Isd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~e--- 424 (898)
T COG5240 349 -ISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQE--- 424 (898)
T ss_pred -hhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhc---
Confidence 2443 57999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred ccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHH
Q 001803 366 SDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLA 445 (1011)
Q Consensus 366 ~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~ 445 (1011)
|+=.+-.-.|.+|.+++...|+..+.++..||.++++++.+..-..|+-|+|+-|. +.+. ...+.|+++
T Consensus 425 -------Gg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP---~a~~-P~~yvrhIy 493 (898)
T COG5240 425 -------GGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGP---RAKT-PGKYVRHIY 493 (898)
T ss_pred -------ccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCC---CCCC-cchHHHHHH
Confidence 22223344556788999999999999999999999999999999999999999884 3333 356889999
Q ss_pred HhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 001803 446 WCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 446 k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~ 510 (1011)
++..-|...||...+.++.|+.+..... ...+-..-+|..|.+|.|-+|||||-|..+-+..
T Consensus 494 NR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 494 NRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 9999999999999999999998876432 1223344456667789999999999999988864
No 13
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2e-10 Score=136.27 Aligned_cols=125 Identities=22% Similarity=0.173 Sum_probs=105.2
Q ss_pred CCCCcccCCCCcccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEEecCcccccccccCCHHHHHHHhhcCCCCcc
Q 001803 807 DLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLRPDIGYFIKPVPMDMETFIEMESRLPGMFE 886 (1011)
Q Consensus 807 ~~~~~~~f~~I~~L~pg~s~~~~lgidF~~~~~~~~~~l~~~~~~~~v~i~p~vgel~~p~~ms~~~f~~~~~~L~GM~e 886 (1011)
..|+.+++.+|+.|.+-+.....+.+.|+++. ++..++..+.++..+.+.|.+ ..|.-|+.++|..-+..+|||.+
T Consensus 769 ~~p~~i~~~~~ell~~~~g~gl~~~y~f~r~~-~~~i~~~~~n~~~~~~~~~~l---~~p~gm~i~ef~~i~s~~pg~~~ 844 (968)
T KOG1060|consen 769 KIPTHIEEKSIELLNEVEGSGLDLEYSFSRLP-DVSISLHFTNKSDLELLGIHL---KLPAGMSIKEFSPIESLPPGASA 844 (968)
T ss_pred cCCccCcchhHhhhhhcccCCcceeeeccCCC-CeeEEEecccCCCccccccee---eccccccccccccccccCCCcce
Confidence 45788899999999999999999999999988 699999999999999998887 99999999999999999999999
Q ss_pred ccc---------------------eeecccCcCcccccccchhhccchhhhhHHHHHHHhhhcccceeeecCcccc
Q 001803 887 YAR---------------------SCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVA 941 (1011)
Q Consensus 887 ~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~ 941 (1011)
++. +|+|.++..++. ..-+.++++..++....+.|+..|+.++.. .|++
T Consensus 845 ~~~~~i~F~dst~~~~~~l~~~~g~~~~~~pvge~~-----~~v~~~~~~~~~E~~~L~gln~~~~~l~~~-~~~a 914 (968)
T KOG1060|consen 845 SVVLGIDFCDSTQAAEWQLLTDDGRVRFQPPVGELV-----QPVRMSEEDFKKERGKLGGLNEHVIQLENP-NPSA 914 (968)
T ss_pred eeeeeeeccccccceeEEEEeccCcEEecCchhhhh-----ccccCCHHHHHhhhhhhcccchhheeeecc-cchh
Confidence 753 455555544442 122467789999999999999999999976 4543
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.86 E-value=1.6e-07 Score=111.90 Aligned_cols=355 Identities=13% Similarity=0.128 Sum_probs=169.9
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHh
Q 001803 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (1011)
Q Consensus 16 aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~ 95 (1011)
.+-+.+...++.+||.+-+++..+...+| +..-..+..+.+=|.+.+|.+.+.|+.++..++. -+++...+..+.+.
T Consensus 46 ~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~l~~~v~~l 122 (526)
T PF01602_consen 46 EVIKLISSKDLELKRLGYLYLSLYLHEDP-ELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEPLIPDVIKL 122 (526)
T ss_dssp HHHCTCSSSSHHHHHHHHHHHHHHTTTSH-HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhHHHHHHHHH
Confidence 44455557777777777777776666666 3333344445555666777777777777777662 23344444555555
Q ss_pred CCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcccccccc
Q 001803 96 LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGL 175 (1011)
Q Consensus 96 L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~i~~~ 175 (1011)
|.+-++.-+-..+-.+.+..+.. |+.
T Consensus 123 l~~~~~~VRk~A~~~l~~i~~~~-----p~~------------------------------------------------- 148 (526)
T PF01602_consen 123 LSDPSPYVRKKAALALLKIYRKD-----PDL------------------------------------------------- 148 (526)
T ss_dssp HHSSSHHHHHHHHHHHHHHHHHC-----HCC-------------------------------------------------
T ss_pred hcCCchHHHHHHHHHHHHHhccC-----HHH-------------------------------------------------
Confidence 55666655544444444433210 000
Q ss_pred ccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhc-CCHHH----HHHHHHHHHH
Q 001803 176 GEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM-SPKED----VKRIVKPLLF 250 (1011)
Q Consensus 176 de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l-ap~~~----l~~i~~pLv~ 250 (1011)
+ ++ . +++.+..+|...+++|+.+|+.++..+ .++.. +..+...|.+
T Consensus 149 --------------------------~-~~-~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~ 199 (526)
T PF01602_consen 149 --------------------------V-ED-E-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQ 199 (526)
T ss_dssp --------------------------H-HG-G-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHH
T ss_pred --------------------------H-HH-H-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhh
Confidence 0 00 1 344555566666666776666666666 44332 3333344444
Q ss_pred Hhcc-CCcchHHHHHHHHHHHHhCCccc--cccccceeec-cCCcHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHhhccC
Q 001803 251 ILRS-SGASKYVVLCNIQVFAKALPHLF--VPHYEDFFVS-SSDSYQSKALKLEILSSIVTESS-ISSVFKEFQDYIRDP 325 (1011)
Q Consensus 251 LL~s-~~eiqYvvL~~I~~i~~~~p~lF--~~~l~~Ffv~-~~Dp~~IK~lKLeIL~~Lane~N-v~~IL~EL~~Yv~~~ 325 (1011)
++.. +|-.|..+|+.+..++...+... ...+..+.-. .+-...|.......+..+..... +..++.-|..++.+.
T Consensus 200 ~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~ 279 (526)
T PF01602_consen 200 LLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLSSS 279 (526)
T ss_dssp HHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSS
T ss_pred cccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcc
Confidence 4332 33344444444443333222222 1122222211 12223455666666666555444 455666666666666
Q ss_pred ChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHH
Q 001803 326 DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFR 405 (1011)
Q Consensus 326 D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~ 405 (1011)
|...+--++++|..++.+.+.... -....+..+.. +.+.++...++..+..+. ++.....++..|.+
T Consensus 280 ~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~~----------~~d~~Ir~~~l~lL~~l~--~~~n~~~Il~eL~~ 346 (526)
T PF01602_consen 280 DPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLLY----------DDDPSIRKKALDLLYKLA--NESNVKEILDELLK 346 (526)
T ss_dssp SHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHHC----------SSSHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cchhehhHHHHHHHhhcccchhhh-hhhhhhheecC----------CCChhHHHHHHHHHhhcc--cccchhhHHHHHHH
Confidence 666666666666666666532222 11222222221 112223333333333332 33334455666666
Q ss_pred hhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCC
Q 001803 406 SLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (1011)
Q Consensus 406 ~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~ 472 (1011)
++....++..+..++--||..+.. .|.....++..+.+-+...+..+..+++....++....|+
T Consensus 347 ~l~~~~d~~~~~~~i~~I~~la~~---~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 347 YLSELSDPDFRRELIKAIGDLAEK---FPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp HHHHC--HHHHHHHHHHHHHHHHH---HGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT
T ss_pred HHHhccchhhhhhHHHHHHHHHhc---cCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh
Confidence 654444444555555555554421 2223344445444444444455555666666666555554
No 15
>PTZ00429 beta-adaptin; Provisional
Probab=98.21 E-value=0.0018 Score=80.98 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=58.9
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHh
Q 001803 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (1011)
Q Consensus 16 aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~ 95 (1011)
.|-|++...+.-+||-.-+.+...-+..| +..-..+.-+.+=|.|+||.|-|.|+..+..|.-. +++-...+.+.+.
T Consensus 72 dVvk~~~S~d~elKKLvYLYL~~ya~~~p-elalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~l~~~lkk~ 148 (746)
T PTZ00429 72 DVVKLAPSTDLELKKLVYLYVLSTARLQP-EKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEYTLEPLRRA 148 (746)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHcccCh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHH
Confidence 34457777788889988888888777777 43333445556667789999999998888887522 2333344555566
Q ss_pred CCCCChhhHH
Q 001803 96 LPDVEEWGQI 105 (1011)
Q Consensus 96 L~d~dEWgQv 105 (1011)
|.|.+++-.-
T Consensus 149 L~D~~pYVRK 158 (746)
T PTZ00429 149 VADPDPYVRK 158 (746)
T ss_pred hcCCCHHHHH
Confidence 6788876643
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.17 E-value=7.8e-06 Score=84.96 Aligned_cols=112 Identities=25% Similarity=0.314 Sum_probs=93.7
Q ss_pred CccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHH-HHHHHHHhcCCChhHHHHHHHHHHHhCCC-
Q 001803 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAI-EEIVGILLNDRSPGVVGAAAAAFASICPN- 80 (1011)
Q Consensus 3 sIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L-~eil~~LL~D~dp~VvgsAv~Af~EIcP~- 80 (1011)
.+|.|.+++..+..+.+++.|.+|+|||+|++++.+|...+.--.++.+ ..++ .+|.|.++.|...|...|.++...
T Consensus 16 ~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l-~~l~D~~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 16 CIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRIL-KLLVDENPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999988773366666 5555 578999999999999999999755
Q ss_pred cccchHHHHHHHHHhCCCCChhhHH---------HHHHHHHHhh
Q 001803 81 NFTLIGRNYRNLCQILPDVEEWGQI---------LLIEILLRYV 115 (1011)
Q Consensus 81 r~dLihk~yrkLc~~L~d~dEWgQv---------~iL~lL~rY~ 115 (1011)
.-+.+..++-.++..|.++.+|.+. .|++.|..|.
T Consensus 95 ~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 95 NPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred cchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHc
Confidence 4567888888888888888888633 5666666664
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.12 E-value=0.0002 Score=91.70 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=67.5
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHH
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL 92 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkL 92 (1011)
.+..+.+.+.|.+|.||+.|+.++.++. +| ..++.|..+|+|.++.|-.+|+.++.++-... +....|
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--~~-----~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-----~~~~~L 689 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT--PP-----GFGPALVAALGDGAAAVRRAAAEGLRELVEVL-----PPAPAL 689 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc--ch-----hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-----CchHHH
Confidence 4557788899999999999999999864 22 24455667889999999999999998883210 011356
Q ss_pred HHhCCCCChhhHHHHHHHHHHh
Q 001803 93 CQILPDVEEWGQILLIEILLRY 114 (1011)
Q Consensus 93 c~~L~d~dEWgQv~iL~lL~rY 114 (1011)
...|.+-|++-+..+++.|...
T Consensus 690 ~~~L~~~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 690 RDHLGSPDPVVRAAALDVLRAL 711 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHHhh
Confidence 6777888888888888877653
No 18
>PRK09687 putative lyase; Provisional
Probab=97.93 E-value=0.00074 Score=75.42 Aligned_cols=235 Identities=12% Similarity=0.048 Sum_probs=159.6
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC-CcccchHHHHHH
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP-NNFTLIGRNYRN 91 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP-~r~dLihk~yrk 91 (1011)
-+..+.+.+.|.++.||..|+.++.++ .. +...+.+..|+.|.++.|=..|+.+|-++-. ++. ....+.-
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~---~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--~~~a~~~ 94 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLR---GG----QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--QDNVFNI 94 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhc---Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--hHHHHHH
Confidence 356778889999999999999998755 22 2344556678999999999999999999853 221 2234555
Q ss_pred HHHh-CCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhccc
Q 001803 92 LCQI-LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (1011)
Q Consensus 92 Lc~~-L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~ 170 (1011)
|..+ +.|-+++-+...+..|...+...
T Consensus 95 L~~l~~~D~d~~VR~~A~~aLG~~~~~~---------------------------------------------------- 122 (280)
T PRK09687 95 LNNLALEDKSACVRASAINATGHRCKKN---------------------------------------------------- 122 (280)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccccc----------------------------------------------------
Confidence 5555 45666655666666665543100
Q ss_pred cccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001803 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF 250 (1011)
Q Consensus 171 ~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~ 250 (1011)
..++ ..++..+.+++.+.++-|=++++...-.+..+ .++.+|+.
T Consensus 123 -------------------------------~~~~-~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~----~ai~~L~~ 166 (280)
T PRK09687 123 -------------------------------PLYS-PKIVEQSQITAFDKSTNVRFAVAFALSVINDE----AAIPLLIN 166 (280)
T ss_pred -------------------------------cccc-hHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH----HHHHHHHH
Confidence 0000 12344456667788889999988887665543 57788999
Q ss_pred Hhcc-CCcchHHHHHHHHHHHHhCCccccccccceeeccCCc-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChh
Q 001803 251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (1011)
Q Consensus 251 LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp-~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~e 328 (1011)
+|.. ++.+++-+...+-.+....|..+..-... ..|+ ..||...+.-|-.+-++.-+..|+++|. +.+
T Consensus 167 ~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~----L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~----~~~-- 236 (280)
T PRK09687 167 LLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAM----LQDKNEEIRIEAIIGLALRKDKRVLSVLIKELK----KGT-- 236 (280)
T ss_pred HhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHH----hcCCChHHHHHHHHHHHccCChhHHHHHHHHHc----CCc--
Confidence 9875 57888888888877633344444332221 2443 6899999999999988877777777665 333
Q ss_pred HHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 329 fv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
+...++.|+|.++.. ..+..|..++.
T Consensus 237 ~~~~a~~ALg~ig~~------~a~p~L~~l~~ 262 (280)
T PRK09687 237 VGDLIIEAAGELGDK------TLLPVLDTLLY 262 (280)
T ss_pred hHHHHHHHHHhcCCH------hHHHHHHHHHh
Confidence 667899999987753 56677777775
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.69 E-value=0.0025 Score=81.84 Aligned_cols=229 Identities=14% Similarity=0.088 Sum_probs=154.4
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHH
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yr 90 (1011)
|-.+..|.+.+.|.++-||..||-++.++-...+ . ...+..+|.|.++.|-.+|+.+|..+-+... .
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-~-----~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~ 717 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-P-----APALRDHLGSPDPVVRAAALDVLRALRAGDA-------A 717 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-c-----hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------H
Confidence 3345677788999999999999999988743222 1 1234567889999999999999988754331 2
Q ss_pred HHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhccc
Q 001803 91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRS 170 (1011)
Q Consensus 91 kLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~ 170 (1011)
.|+..|.|-|++-+...+..|.+...
T Consensus 718 ~l~~~L~D~d~~VR~~Av~aL~~~~~------------------------------------------------------ 743 (897)
T PRK13800 718 LFAAALGDPDHRVRIEAVRALVSVDD------------------------------------------------------ 743 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhcccC------------------------------------------------------
Confidence 46778889999888777776664310
Q ss_pred cccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 001803 171 YIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF 250 (1011)
Q Consensus 171 ~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~ 250 (1011)
+ . .+..+|...|+-|-.+++..+-.+..... .....|+.
T Consensus 744 ---------------------------------~--~----~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--~~~~~L~~ 782 (897)
T PRK13800 744 ---------------------------------V--E----SVAGAATDENREVRIAVAKGLATLGAGGA--PAGDAVRA 782 (897)
T ss_pred ---------------------------------c--H----HHHHHhcCCCHHHHHHHHHHHHHhccccc--hhHHHHHH
Confidence 0 0 11245677788898999988777754321 22456778
Q ss_pred Hhcc-CCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhH
Q 001803 251 ILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRF 329 (1011)
Q Consensus 251 LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~ef 329 (1011)
++.. ++++|..++..|..+-. +......+..+ ..++...||...++.|..+.++.-+ .-|...+.|.+..+
T Consensus 783 ll~D~d~~VR~aA~~aLg~~g~--~~~~~~~l~~a--L~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~V 854 (897)
T PRK13800 783 LTGDPDPLVRAAALAALAELGC--PPDDVAAATAA--LRASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDV 854 (897)
T ss_pred HhcCCCHHHHHHHHHHHHhcCC--cchhHHHHHHH--hcCCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHH
Confidence 8874 68899999888876532 22111122222 1233457999999999998766544 44445557889999
Q ss_pred HHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 330 AADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 330 v~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
+..+++++|++ .. .......|...++
T Consensus 855 R~~A~~aL~~~--~~---~~~a~~~L~~al~ 880 (897)
T PRK13800 855 RKAAVLALTRW--PG---DPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHhcc--CC---CHHHHHHHHHHHh
Confidence 99999999985 11 2244556666665
No 20
>PRK09687 putative lyase; Provisional
Probab=97.68 E-value=0.0024 Score=71.36 Aligned_cols=244 Identities=13% Similarity=0.046 Sum_probs=159.4
Q ss_pred hhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCC--ccccccccceeecc
Q 001803 212 CTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP--HLFVPHYEDFFVSS 288 (1011)
Q Consensus 212 ~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p--~lF~~~l~~Ffv~~ 288 (1011)
-+.++|.+.|.-|-.+++..+-.+..+ .+...+..|+.+ ++.+|..+...+-.|-.... .-..+.+..++ .
T Consensus 27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~----~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~--~ 100 (280)
T PRK09687 27 ELFRLLDDHNSLKRISSIRVLQLRGGQ----DVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA--L 100 (280)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCcc----hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH--h
Confidence 356778999999999999988777654 344455667765 68899998888877643211 01122333332 3
Q ss_pred CCc-HHHHHHHHHHHHhhcCCCC--HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhcc
Q 001803 289 SDS-YQSKALKLEILSSIVTESS--ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLT 365 (1011)
Q Consensus 289 ~Dp-~~IK~lKLeIL~~Lane~N--v~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~ 365 (1011)
+|+ ..||.-....|-.++.... -...+..|...+.+.+..++..++.++|.+. ....+..|+.+|+.
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~------~~~ai~~L~~~L~d---- 170 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN------DEAAIPLLINLLKD---- 170 (280)
T ss_pred cCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC------CHHHHHHHHHHhcC----
Confidence 454 5799999999999976654 2456777888888888899999999998754 24577889999873
Q ss_pred ccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHH
Q 001803 366 SDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLA 445 (1011)
Q Consensus 366 ~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~ 445 (1011)
.+..|-..++..|-.+ +.....++..|.+.+.+- ++..|...+|-+|+.++ +..+|.+++.+-
T Consensus 171 -------~~~~VR~~A~~aLg~~----~~~~~~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~-----~~av~~Li~~L~ 233 (280)
T PRK09687 171 -------PNGDVRNWAAFALNSN----KYDNPDIREAFVAMLQDK-NEEIRIEAIIGLALRKD-----KRVLSVLIKELK 233 (280)
T ss_pred -------CCHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhcCC-ChHHHHHHHHHHHccCC-----hhHHHHHHHHHc
Confidence 2333444455555544 222345677777777543 56789999999999874 334555555443
Q ss_pred HhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHH
Q 001803 446 WCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFF 504 (1011)
Q Consensus 446 k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y 504 (1011)
.. .++..+..++..+-- | +.+..+.++...+.|..||.+|++-
T Consensus 234 ----~~--~~~~~a~~ALg~ig~--~--------~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 234 ----KG--TVGDLIIEAAGELGD--K--------TLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred ----CC--chHHHHHHHHHhcCC--H--------hHHHHHHHHHhhCCChhHHHHHHHH
Confidence 22 256566666665522 1 1233334444456699999998753
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.29 E-value=0.1 Score=63.16 Aligned_cols=110 Identities=15% Similarity=0.180 Sum_probs=85.0
Q ss_pred hhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcc
Q 001803 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF 82 (1011)
Q Consensus 7 p~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~ 82 (1011)
..+.|-....+.+++.+++|.||.-|+.+|.++-+..... ....+...+-.+|.|.+..|...|+.++..++....
T Consensus 72 ~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 72 DSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence 4457778889999999999999999999999987654311 224567777789999999999999999999986543
Q ss_pred cc--h-HH-HHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001803 83 TL--I-GR-NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 83 dL--i-hk-~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1011)
.+ + .. ...+|.+.+...++=.+..+++++...+.
T Consensus 152 ~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 152 GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 22 2 22 26777777777788888888888887764
No 22
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.038 Score=67.98 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=124.0
Q ss_pred HHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcc
Q 001803 55 VGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIE 134 (1011)
Q Consensus 55 l~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~ 134 (1011)
|++=|+-++..|+|-|+.||..||+..+ +...+--.-++|..-+|+-.-..+-.+.|+.|.. |+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~Em--ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-----P~--------- 175 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPEM--ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-----PD--------- 175 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHHH--hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-----ch---------
Confidence 4444566788999999999999997652 2222223333444477777666666666665411 11
Q ss_pred cCCCcccccccccccccCCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhh
Q 001803 135 SSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS 214 (1011)
Q Consensus 135 ~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~ 214 (1011)
=...|+....
T Consensus 176 ----------------------------------------------------------------------l~e~f~~~~~ 185 (866)
T KOG1062|consen 176 ----------------------------------------------------------------------LVEHFVIAFR 185 (866)
T ss_pred ----------------------------------------------------------------------HHHHhhHHHH
Confidence 0245777788
Q ss_pred hhccCCChHHHHHHHHHHHhcC---C--HHHHHHHHHHHHHHhcc------CCcchHHHHHHHHHHHHhCCccccccccc
Q 001803 215 PLLWSHNSAVVLAAAGVHWIMS---P--KEDVKRIVKPLLFILRS------SGASKYVVLCNIQVFAKALPHLFVPHYED 283 (1011)
Q Consensus 215 pLLqS~NsAVVlaaa~l~~~la---p--~~~l~~i~~pLv~LL~s------~~eiqYvvL~~I~~i~~~~p~lF~~~l~~ 283 (1011)
.+|..++.+|.+++..+++.+- | ...++.++.-|++.|+. +||--| .++-.||+..
T Consensus 186 ~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv-------------~gi~dPFLQi 252 (866)
T KOG1062|consen 186 KLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDV-------------HGISDPFLQI 252 (866)
T ss_pred HHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc-------------cCCCchHHHH
Confidence 8899999999999999987653 2 24577888888877642 222111 1222333221
Q ss_pred -----eeeccCCcHHHHHHHHHHHHhhcCC----CCHH-HHHHHHHHhhcc--CChhHHHHHHHHHHHHHhhCcccHH-H
Q 001803 284 -----FFVSSSDSYQSKALKLEILSSIVTE----SSIS-SVFKEFQDYIRD--PDRRFAADTVAAIGLCARKLPKMAN-T 350 (1011)
Q Consensus 284 -----Ffv~~~Dp~~IK~lKLeIL~~Lane----~Nv~-~IL~EL~~Yv~~--~D~efv~~aI~AIG~~A~k~p~~a~-~ 350 (1011)
.-++..+......+-=|||..+++. .|+. .||=|=-.-+.+ .+..++..||..||+.-.+-..... -
T Consensus 253 ~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYv 332 (866)
T KOG1062|consen 253 RILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYV 332 (866)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeee
Confidence 1122222233666667888888752 3553 566665555544 4557888888888886544333222 2
Q ss_pred HHHHHHHHHHh
Q 001803 351 CVEGLLALIRQ 361 (1011)
Q Consensus 351 cl~~LL~LLs~ 361 (1011)
-++.|++++..
T Consensus 333 aLn~L~r~V~~ 343 (866)
T KOG1062|consen 333 ALNMLLRVVQQ 343 (866)
T ss_pred ehhhHHhhhcC
Confidence 35666666653
No 23
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.19 E-value=0.24 Score=67.84 Aligned_cols=198 Identities=14% Similarity=0.160 Sum_probs=113.7
Q ss_pred CCcHHHHHHHHHHHHhhcCC--CCHHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcc------cHHHHHHHH
Q 001803 289 SDSYQSKALKLEILSSIVTE--SSISS-----VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK------MANTCVEGL 355 (1011)
Q Consensus 289 ~Dp~~IK~lKLeIL~~Lane--~Nv~~-----IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~------~a~~cl~~L 355 (1011)
++...+|.....+|.++++. ++++. ++.-|..-+.+.+.+.++++..||+.++..... +...|+..|
T Consensus 620 sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL 699 (2102)
T PLN03200 620 SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPL 699 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHH
Confidence 44456777777777777752 23232 233455556667778888888888888742221 223468888
Q ss_pred HHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcc----hHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCC
Q 001803 356 LALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV 431 (1011)
Q Consensus 356 L~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~----~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e 431 (1011)
+++|+. .+..++.++...|..|++..... ...++..|++.+.+= .+..|...+|.+.+-|....
T Consensus 700 ~~LL~~-----------~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 700 IKLAKS-----------SSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG-TLEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHhC-----------CChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC-ChHHHHHHHHHHHHHHhCCC
Confidence 888874 23446667777777777543322 234477777777643 36778888888887764321
Q ss_pred CccccHHHHH-HHHH------------HhhccChHHH--HHHHHHHHHHH----hhhcCC-----CChHHHHHHHHHHHH
Q 001803 432 KIPRMLTTVL-KYLA------------WCFKSEAVET--KLQILNTTIKV----LLCAKG-----GDMWTITRLFSYLLE 487 (1011)
Q Consensus 432 ~ip~ia~dvL-R~l~------------k~F~~E~~~V--KlqILta~aKL----~~~~p~-----e~~~~l~~L~qyVL~ 487 (1011)
..+++ ..+. +.-..+...+ -+..|.+.+|. -...|. |....+..|.+.+
T Consensus 768 -----~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-- 840 (2102)
T PLN03200 768 -----VDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-- 840 (2102)
T ss_pred -----hhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH--
Confidence 12222 1111 1222233333 56677777774 111111 1111344555543
Q ss_pred HHccCCChHHHhHHHHHHHHc
Q 001803 488 LAECDLNYDVRDRARFFKKLF 508 (1011)
Q Consensus 488 La~~D~n~DVRDRAr~y~~LL 508 (1011)
.+-+|+|+|+|.....=|
T Consensus 841 ---~~~~p~~~~kai~il~~~ 858 (2102)
T PLN03200 841 ---AEGHPLVQDKAIEILSRL 858 (2102)
T ss_pred ---HcCChHHHHHHHHHHHHH
Confidence 467999999998876554
No 24
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.99 E-value=0.11 Score=70.88 Aligned_cols=356 Identities=14% Similarity=0.098 Sum_probs=219.1
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhH-----HHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc---ccc
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTL 84 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~-----~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r---~dL 84 (1011)
.++.+-+.+.+.++-+|+.|+.++..+-.-++ +++ ...++.|-.||...++.+.-.|+.++..+|-+. -.+
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nd-enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~i 525 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVD-ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34566677888899999999999988876555 333 235667778999889999999999999998532 223
Q ss_pred h--HHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchh
Q 001803 85 I--GRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (1011)
Q Consensus 85 i--hk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~ 162 (1011)
+ +..+..|+++|..-+.=+|...+..|.......
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-------------------------------------------- 561 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-------------------------------------------- 561 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc--------------------------------------------
Confidence 3 346778888888777766777777766654210
Q ss_pred hhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHh---cCCHH
Q 001803 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI---MSPKE 239 (1011)
Q Consensus 163 ~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~---lap~~ 239 (1011)
|.+ .+..+..+|.+.++.+...+.+++-+ +....
T Consensus 562 ----------------------------------------d~~---~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 562 ----------------------------------------DAA---TISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred ----------------------------------------chh---HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 000 11223345667777666666665433 33322
Q ss_pred H-H------HHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCcc---------ccccccceeeccCCcHHHHHHHHHHH
Q 001803 240 D-V------KRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHL---------FVPHYEDFFVSSSDSYQSKALKLEIL 302 (1011)
Q Consensus 240 ~-l------~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~l---------F~~~l~~Ffv~~~Dp~~IK~lKLeIL 302 (1011)
+ + ...+..|+.||.+ +++++--+...|..++..+++. +.|-+.. ..+....+++.+---|
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L---Lss~~~~v~keAA~AL 675 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL---LTNNTEAVATQSARAL 675 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH---HhcCChHHHHHHHHHH
Confidence 2 1 2356788999986 4677777877887777766542 2222222 2223344777777777
Q ss_pred Hhhc---CCCCHHHHH-----HHHHHhhccCChhHHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHhhhccccccC
Q 001803 303 SSIV---TESSISSVF-----KEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIES 370 (1011)
Q Consensus 303 ~~La---ne~Nv~~IL-----~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a----~~cl~~LL~LLs~~~~~~~~~~ 370 (1011)
.+|+ ++.|...++ .=|...+++.|.+++..+..+++.++..-.... ...+..|+++|+.
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~--------- 746 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE--------- 746 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh---------
Confidence 7777 444544433 347778888899999999999999986543221 3457889999984
Q ss_pred CCCCCcchhhHHHHHHHHHhhCCcch--------HHHHHHHHHhhhccC-----chhHHHHhhhhhcc-ccCCCCCcccc
Q 001803 371 GNGEADVLIQSIISIKSIIKQDPSCH--------EKVIIQLFRSLDSIK-----VPEARVMIIWMVGE-YSSVGVKIPRM 436 (1011)
Q Consensus 371 ~~~~~~vV~E~V~vIk~Llq~~P~~~--------~~ii~~L~~~Ld~I~-----~p~ArAsIiWLIGE-Y~~~~e~ip~i 436 (1011)
|...+-..+.-.|.+|.+..|..+ ..++..|+.+|...+ ..+|.-++.|+.-- ++..... |.+
T Consensus 747 --G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~-~~~ 823 (2102)
T PLN03200 747 --GTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSH-PPW 823 (2102)
T ss_pred --CChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCC-Cch
Confidence 222233445667888888877432 345677788776543 23455666777652 2211011 111
Q ss_pred H-----HHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcC
Q 001803 437 L-----TTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (1011)
Q Consensus 437 a-----~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p 471 (1011)
. |.-|..++.....+.+.++--.+-...+|.-..|
T Consensus 824 ~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 824 AVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred hhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 0 1123334444455666776666666666654444
No 25
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.038 Score=67.42 Aligned_cols=63 Identities=25% Similarity=0.214 Sum_probs=53.0
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
+-.+++|-+.+++-|||=...-=+.|| ..| +..+.|.+.+...|..+.+.|-.+|+.|+.+|.
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL--kE~-ELlepl~p~IracleHrhsYVRrNAilaifsIy 162 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL--KEP-ELLEPLMPSIRACLEHRHSYVRRNAILAIFSIY 162 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc--CcH-HHhhhhHHHHHHHHhCcchhhhhhhheeehhHH
Confidence 445999999999999998866666555 355 677889999999999999999999999988874
No 26
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.82 E-value=0.0042 Score=58.34 Aligned_cols=102 Identities=20% Similarity=0.080 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc---ccch
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN---FTLI 85 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r---~dLi 85 (1011)
++..+.+.+.|.++++|+.|+.|+.++....|+. .....++.+-.+|+|+++.|..+|+.++..++-+. ...+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 5566777888999999999999999999876632 22256677788999999999999999999998543 2223
Q ss_pred HH--HHHHHHHhCCCCChhhHHHHHHHHHHh
Q 001803 86 GR--NYRNLCQILPDVEEWGQILLIEILLRY 114 (1011)
Q Consensus 86 hk--~yrkLc~~L~d~dEWgQv~iL~lL~rY 114 (1011)
++ ....|.+.|.+.+.+-+-..+.+|...
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33 377888888888888887777777654
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.86 Score=58.63 Aligned_cols=392 Identities=17% Similarity=0.183 Sum_probs=205.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhccC---hhh------hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccc
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHELR---QEE------ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL 84 (1011)
Q Consensus 14 ~~aIkk~l~D~SPYVRKtAA~AI~Kly~ld---pe~------~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dL 84 (1011)
..-..+|++|+|--||=+|+.|+.-+.... ++. ..+.++.++..++.+.+..++..++.+|.|+....-.+
T Consensus 161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~ 240 (1075)
T KOG2171|consen 161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKL 240 (1075)
T ss_pred HHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHH
Confidence 344568999998889999999998877654 321 22446677888889999999999999999997665566
Q ss_pred hHHHHHHHHHhC------CCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001803 85 IGRNYRNLCQIL------PDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1011)
Q Consensus 85 ihk~yrkLc~~L------~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (1011)
+.+++-.++..- ++.++=-....|++|.-|.+.- |. +++-.. .+..+-.
T Consensus 241 l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A-----p~-----~~k~~~-----------~~~~~lv---- 295 (1075)
T KOG2171|consen 241 LRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA-----PA-----MCKKLA-----------LLGHTLV---- 295 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh-----HH-----Hhhhch-----------hhhccHH----
Confidence 666655544332 4577777777888876655320 10 111000 0000000
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH
Q 001803 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238 (1011)
Q Consensus 159 ~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~ 238 (1011)
-.-..-| .. ....+++.. + ...|+|.. .+.+.+-.-+.-++-+++.|+
T Consensus 296 -~~~l~~m-te--~~~D~ew~~--~----------------d~~ded~~----------~~~~~~A~~~lDrlA~~L~g~ 343 (1075)
T KOG2171|consen 296 -PVLLAMM-TE--EEDDDEWSN--E----------------DDLDEDDE----------ETPYRAAEQALDRLALHLGGK 343 (1075)
T ss_pred -HHHHHhc-CC--cccchhhcc--c----------------cccccccc----------cCcHHHHHHHHHHHHhcCChh
Confidence 0000000 00 000011110 0 01222210 011112222334555678777
Q ss_pred HHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 001803 239 EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKE 317 (1011)
Q Consensus 239 ~~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~E 317 (1011)
..+..+...+-.+|.| +.--|..+|..|..++.-+++...+ |+..|+.=
T Consensus 344 ~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~------------------------------~l~~Il~~ 393 (1075)
T KOG2171|consen 344 QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG------------------------------NLPKILPI 393 (1075)
T ss_pred hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH------------------------------HHHHHHHH
Confidence 6666666777777776 4567888999888887766544333 34556666
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHhhCcc-cHHHHHHHHH----HHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhC
Q 001803 318 FQDYIRDPDRRFAADTVAAIGLCARKLPK-MANTCVEGLL----ALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1011)
Q Consensus 318 L~~Yv~~~D~efv~~aI~AIG~~A~k~p~-~a~~cl~~LL----~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~ 392 (1011)
...++.|+++.++-+|..|||+++..+++ ....+-+.+. ..+.. ..+..|-..+...+-.....+
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~----------~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS----------TQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc----------cCchHHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999865 4444444444 33321 111223444555555555555
Q ss_pred Ccc-hHHHHHHHHH----hhhccCchhHHHHhhhhhccccCCC--CCcccc---HHHHHHHHHHhhc-cChHHHHHHHHH
Q 001803 393 PSC-HEKVIIQLFR----SLDSIKVPEARVMIIWMVGEYSSVG--VKIPRM---LTTVLKYLAWCFK-SEAVETKLQILN 461 (1011)
Q Consensus 393 P~~-~~~ii~~L~~----~Ld~I~~p~ArAsIiWLIGEY~~~~--e~ip~i---a~dvLR~l~k~F~-~E~~~VKlqILt 461 (1011)
+.. ....+..|++ .|..-..|.++..++--||.-++.. ..+||. .|- |+.+..+-. .+-.+.|...+-
T Consensus 464 ~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~-L~~~L~n~~~~d~r~LrgktmE 542 (1075)
T KOG2171|consen 464 DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPL-LKNFLQNADDKDLRELRGKTME 542 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH-HHHHHhCCCchhhHHHHhhHHH
Confidence 432 2333333333 3333334555555555555433211 134442 232 333333333 344456655433
Q ss_pred HHHHHhhh-cCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 001803 462 TTIKVLLC-AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFK 505 (1011)
Q Consensus 462 a~aKL~~~-~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~ 505 (1011)
.+.=+-.- ..+.-.+....+.|-.+++.-. +-|.+||-|.|.
T Consensus 543 cisli~~AVGke~F~~~a~eliqll~~~~~~--~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 543 CLSLIARAVGKEKFLPLAEELIQLLLELQGS--DQDDDDPLRSYM 585 (1075)
T ss_pred HHHHHHHHhhhhhhhHhHHHHHHHHHhhccc--chhhccccHHHH
Confidence 22211111 1111112234455555555422 455555555553
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.77 E-value=0.43 Score=58.09 Aligned_cols=410 Identities=16% Similarity=0.157 Sum_probs=230.0
Q ss_pred chhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChh---hhHHHHHHHHHHHhcCCChhHHHHHHHHHH-----Hh
Q 001803 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAAAFA-----SI 77 (1011)
Q Consensus 6 Vp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe---~~~~~L~eil~~LL~D~dp~VvgsAv~Af~-----EI 77 (1011)
=.+++|++++-+|+.+....+.||-++++|+.-+-.-.-+ ...+.|+..+-.+|.|+-|.|-.=+--.+. -+
T Consensus 387 ~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 387 GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV 466 (885)
T ss_pred HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence 3678999999999999999999999999999877653211 156789999999999999998654332222 12
Q ss_pred CCCcccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCC
Q 001803 78 CPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (1011)
Q Consensus 78 cP~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~ 157 (1011)
+..+-..+.+....|++.+.|-+-|-|-...-.++.+-. +
T Consensus 467 ~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE------------------------~---------------- 506 (885)
T KOG2023|consen 467 QDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEE------------------------E---------------- 506 (885)
T ss_pred cCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH------------------------h----------------
Confidence 333445667777788888888888888877666554321 0
Q ss_pred ccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhh---hhccCCChHHHHHHHHHHH-
Q 001803 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTS---PLLWSHNSAVVLAAAGVHW- 233 (1011)
Q Consensus 158 ~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~---pLLqS~NsAVVlaaa~l~~- 233 (1011)
..++ +=|-+.-+|+.+. ..-|++|--+++-|+..+-
T Consensus 507 -A~~e---------------------------------------LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAd 546 (885)
T KOG2023|consen 507 -AGEE---------------------------------------LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLAD 546 (885)
T ss_pred -ccch---------------------------------------hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHH
Confidence 0011 1122333444333 2347899999999988753
Q ss_pred ----hcCCHHHHHHHHHHHHH---HhccCCcchHHHHHHHHHHHHhCCccccccccceeec---------------cCCc
Q 001803 234 ----IMSPKEDVKRIVKPLLF---ILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS---------------SSDS 291 (1011)
Q Consensus 234 ----~lap~~~l~~i~~pLv~---LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~---------------~~Dp 291 (1011)
++..+.+++.+..||+. +|+.+----|=.|.++..++..-..-|.||..-.|-| ..||
T Consensus 547 svg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~ 626 (885)
T KOG2023|consen 547 SVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDP 626 (885)
T ss_pred HHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 66777889999999983 5554322345567777777766555555543222211 1222
Q ss_pred HH------HHHHHHHHHHhhcC--CCCHHH------HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 001803 292 YQ------SKALKLEILSSIVT--ESSISS------VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357 (1011)
Q Consensus 292 ~~------IK~lKLeIL~~Lan--e~Nv~~------IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~ 357 (1011)
++ .-...||++.-|+- .+.++. |++=|.....|.-++++.-+-.-+|.++...++-..-|+.-++.
T Consensus 627 ~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~ 706 (885)
T KOG2023|consen 627 TVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLP 706 (885)
T ss_pred cccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 21 22335677766653 122222 34445566677777888888888998887655444444555555
Q ss_pred HHHhhhccccccCCCCCC-cchhhHHHHHHHHH-hhCCcc---hHHHHHHHHHhhhccCchh----HHHHhhhhhccccC
Q 001803 358 LIRQELLTSDIESGNGEA-DVLIQSIISIKSII-KQDPSC---HEKVIIQLFRSLDSIKVPE----ARVMIIWMVGEYSS 428 (1011)
Q Consensus 358 LLs~~~~~~~~~~~~~~~-~vV~E~V~vIk~Ll-q~~P~~---~~~ii~~L~~~Ld~I~~p~----ArAsIiWLIGEY~~ 428 (1011)
+|-.+. +.+. .+..-++=.|-.|- +..++. ...++..|...+..-..|. --|--|=-+|-+|.
T Consensus 707 ~lg~Nl--------~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P 778 (885)
T KOG2023|consen 707 ILGANL--------NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP 778 (885)
T ss_pred HHhhcC--------ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH
Confidence 554321 1111 13333443344332 223332 2334444444443222221 11222333444442
Q ss_pred CCCCccccHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHH
Q 001803 429 VGVKIPRMLTTVLKYLAWCFKS-EAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKL 507 (1011)
Q Consensus 429 ~~e~ip~ia~dvLR~l~k~F~~-E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~L 507 (1011)
. +..|. .+.+.|.-..+..+ -+.+.|-....-++++.-.+|... +..+.-.+.-.|.+. |+. -|=.-+++++
T Consensus 779 e-~vAp~-l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~v---v~~~~f~c~aiAsw~-np~-~~l~~~f~ki 851 (885)
T KOG2023|consen 779 E-EVAPH-LDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGV---VSSFIFICDAIASWS-NPE-DDLRDEFYKI 851 (885)
T ss_pred H-hcchh-HHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhh---hhhhHHHHHHHhccc-ChH-HHHHHHHHHH
Confidence 1 12232 23333332222222 245666666777777777788642 333333344445555 555 4444466666
Q ss_pred ccC
Q 001803 508 FSH 510 (1011)
Q Consensus 508 L~~ 510 (1011)
|..
T Consensus 852 L~g 854 (885)
T KOG2023|consen 852 LQG 854 (885)
T ss_pred HHH
Confidence 654
No 29
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.11 Score=64.80 Aligned_cols=98 Identities=23% Similarity=0.226 Sum_probs=70.6
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHH-HH
Q 001803 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRN-YR 90 (1011)
Q Consensus 12 iv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~-yr 90 (1011)
+.+..++|-+.|++||+|=+|.-.+.++ -++ ...+.++.-|+++|.|+++.|-.+|+.|+.++..-.-++.|.. .-
T Consensus 92 LavNti~kDl~d~N~~iR~~AlR~ls~l--~~~-el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 92 LAVNTIQKDLQDPNEEIRGFALRTLSLL--RVK-ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHhc--ChH-HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 4456889999999999999998888865 344 5677888889999999999999999999988864333444443 22
Q ss_pred -HHHHhCCCCChhhHHHHHHHHHHhh
Q 001803 91 -NLCQILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 91 -kLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
.+-.++.|-|+ +++=+.|.-|.
T Consensus 169 ~~l~~l~~D~dP---~Vi~nAl~sl~ 191 (757)
T COG5096 169 DILKELVADSDP---IVIANALASLA 191 (757)
T ss_pred HHHHHHhhCCCc---hHHHHHHHHHH
Confidence 23334457777 44445554443
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=1.5 Score=56.50 Aligned_cols=405 Identities=12% Similarity=0.111 Sum_probs=230.5
Q ss_pred cCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHhCC---
Q 001803 21 ARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILP--- 97 (1011)
Q Consensus 21 l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L~--- 97 (1011)
..-+.|-|||+-|-.|+-+.+.+=++.=++|.+.|-..+++.++.--=+|+..|..+--..-.-..+|++-|.+++.
T Consensus 89 ~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~ 168 (1075)
T KOG2171|consen 89 QSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTM 168 (1075)
T ss_pred HhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhc
Confidence 45688999999999999999864314556777777778889999888889888776532111123345555555553
Q ss_pred -CCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhccccccccc
Q 001803 98 -DVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLG 176 (1011)
Q Consensus 98 -d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~i~~~d 176 (1011)
|.+-=-.+.-++.+..|+..- ..++ .. .+++.
T Consensus 169 ~d~s~~vr~~a~rA~~a~~~~~-----------~~~~----------------------------~~----~~~~~---- 201 (1075)
T KOG2171|consen 169 TDPSSPVRVAAVRALGAFAEYL-----------ENNK----------------------------SE----VDKFR---- 201 (1075)
T ss_pred cCCcchHHHHHHHHHHHHHHHh-----------ccch----------------------------HH----HHHHH----
Confidence 332224455556666655310 0000 00 00000
Q ss_pred cccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHH---HhcCCH---HHHHHHHHHHHH
Q 001803 177 EYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVH---WIMSPK---EDVKRIVKPLLF 250 (1011)
Q Consensus 177 e~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~---~~lap~---~~l~~i~~pLv~ 250 (1011)
+=+=-+|+.+.+.++..+..+.-.+..++ ....|+ ..+..++.--+.
T Consensus 202 ---------------------------~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~ 254 (1075)
T KOG2171|consen 202 ---------------------------DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLE 254 (1075)
T ss_pred ---------------------------HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 00112556666667777764433333333 333332 233333333334
Q ss_pred Hhcc---CCcchHHHHHHHHHHHHhCCcccccc---ccceee------------------------ccCCcHHHHHHHHH
Q 001803 251 ILRS---SGASKYVVLCNIQVFAKALPHLFVPH---YEDFFV------------------------SSSDSYQSKALKLE 300 (1011)
Q Consensus 251 LL~s---~~eiqYvvL~~I~~i~~~~p~lF~~~---l~~Ffv------------------------~~~Dp~~IK~lKLe 300 (1011)
+.++ ++.+|..+|..|..++...|.+...+ ....+. ..++|..+....||
T Consensus 255 Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 255 IAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred HhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHH
Confidence 4443 46789999999988877655433221 111110 01225566667777
Q ss_pred HHHhhcC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHhhhccccccCCCCCC
Q 001803 301 ILSSIVT-ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQELLTSDIESGNGEA 375 (1011)
Q Consensus 301 IL~~Lan-e~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a----~~cl~~LL~LLs~~~~~~~~~~~~~~~ 375 (1011)
-|..=-. +.=+..++.-+..++.+.+-..+.++..||+.+++--++.. +.+++..+..|+. ..
T Consensus 335 rlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~D-----------ph- 402 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLND-----------PH- 402 (1075)
T ss_pred HHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCC-----------CC-
Confidence 6653333 44457788889999999999999999999999887665543 4444444444431 12
Q ss_pred cchhh-HHHHHHHHHhh-CCcc----hHHHHHHHHHhhhccCchhHHH---HhhhhhccccCCCCCccccHHHHHH-HHH
Q 001803 376 DVLIQ-SIISIKSIIKQ-DPSC----HEKVIIQLFRSLDSIKVPEARV---MIIWMVGEYSSVGVKIPRMLTTVLK-YLA 445 (1011)
Q Consensus 376 ~vV~E-~V~vIk~Llq~-~P~~----~~~ii~~L~~~Ld~I~~p~ArA---sIiWLIGEY~~~~e~ip~ia~dvLR-~l~ 445 (1011)
-+|.. +...|-++=.. .|+. |+.++..|+..+++-..+...+ +.+-=+.|.|..-...|| .+.++. ++.
T Consensus 403 prVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~l~ 481 (1075)
T KOG2171|consen 403 PRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKKLL 481 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHHH
Confidence 24444 44455444322 2332 4455556777777665544322 223334466643223455 456665 332
Q ss_pred HhhccChHHHHHHHHHHHHHHhhhcCCC---ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCC
Q 001803 446 WCFKSEAVETKLQILNTTIKVLLCAKGG---DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNL 512 (1011)
Q Consensus 446 k~F~~E~~~VKlqILta~aKL~~~~p~e---~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~~ 512 (1011)
---......||-|++|+.+-+....... -.+++-.++..+|..+..+....+|-...+-..++...+
T Consensus 482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV 551 (1075)
T KOG2171|consen 482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV 551 (1075)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh
Confidence 2224567889999999998876554321 112343455667776665567888888888888887654
No 31
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.28 Score=60.07 Aligned_cols=240 Identities=15% Similarity=0.158 Sum_probs=168.1
Q ss_pred hhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHH
Q 001803 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR 87 (1011)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk 87 (1011)
.+.-+.+.-++|-+...+-|=---|.-|+..+ .-| +...+|..-+-.||+-+-|.|--=|+.++..||-.--+-+.+
T Consensus 105 dvlmL~tn~~rkdl~S~n~ye~giAL~GLS~f--vTp-dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~ 181 (877)
T KOG1059|consen 105 DVLMLTTNLLRKDLNSSNVYEVGLALSGLSCI--VTP-DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP 181 (877)
T ss_pred cHHHHHHHHHHHHhccCccchhhheecccccc--cCc-hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh
Confidence 34556677788888876666544444444422 245 555566666678999999999999999999999555566889
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhh
Q 001803 88 NYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLV 167 (1011)
Q Consensus 88 ~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~ 167 (1011)
+|.+|...|.|.|+=-|....+++-..+|.. |-
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKn-----Pk------------------------------------------ 214 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKN-----PQ------------------------------------------ 214 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhC-----Cc------------------------------------------
Confidence 9999999999999999999999999888632 10
Q ss_pred ccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCC--HHHHHHHH
Q 001803 168 SRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP--KEDVKRIV 245 (1011)
Q Consensus 168 ~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap--~~~l~~i~ 245 (1011)
.|++ +.|+.-.| +..|.|.=|+.-.+++|-.++| |.--++++
T Consensus 215 --nyL~----------------------------LAP~ffkl------lttSsNNWmLIKiiKLF~aLtplEPRLgKKLi 258 (877)
T KOG1059|consen 215 --NYLQ----------------------------LAPLFYKL------LVTSSNNWVLIKLLKLFAALTPLEPRLGKKLI 258 (877)
T ss_pred --cccc----------------------------ccHHHHHH------HhccCCCeehHHHHHHHhhccccCchhhhhhh
Confidence 0111 33443333 2457888899999999999998 34567789
Q ss_pred HHHHHHhccCCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccC
Q 001803 246 KPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDP 325 (1011)
Q Consensus 246 ~pLv~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~ 325 (1011)
.||.-|+++-.. .-+...+|.+++.. ++-..+- ++. ..++.-+..|..|+.+.
T Consensus 259 eplt~li~sT~A-mSLlYECvNTVVa~--s~s~g~~-------d~~-----------------asiqLCvqKLr~fieds 311 (877)
T KOG1059|consen 259 EPITELMESTVA-MSLLYECVNTVVAV--SMSSGMS-------DHS-----------------ASIQLCVQKLRIFIEDS 311 (877)
T ss_pred hHHHHHHHhhHH-HHHHHHHHHHheee--hhccCCC-------CcH-----------------HHHHHHHHHHhhhhhcC
Confidence 999999876332 33556777776654 2222221 111 12233355666677777
Q ss_pred ChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 326 DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 326 D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
|..++--..-|++.++...|+.....-+.++++|.
T Consensus 312 DqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~ 346 (877)
T KOG1059|consen 312 DQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD 346 (877)
T ss_pred CccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence 88787778888888888888888888888888876
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.58 Score=56.10 Aligned_cols=290 Identities=17% Similarity=0.147 Sum_probs=173.8
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChh---hhHHHHHHHHHHHhcCCChhHHHHHHH---HHHHhCCCcc-
Q 001803 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---EITSAIEEIVGILLNDRSPGVVGAAAA---AFASICPNNF- 82 (1011)
Q Consensus 10 ~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe---~~~~~L~eil~~LL~D~dp~VvgsAv~---Af~EIcP~r~- 82 (1011)
.+-++++|-.|..|..--||=-|.-++..+-+.... ...+.+.+.+.++-.|++..|-++|=. .+.+|.-++-
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~ 161 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESAS 161 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcccccc
Confidence 344567888999999999998887765544433221 256778889999999999999988743 3455543332
Q ss_pred cc-hHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccch
Q 001803 83 TL-IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDS 161 (1011)
Q Consensus 83 dL-ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~ 161 (1011)
.+ +.+-+.=|-..+...++...+.++.-|...--. |..-|.++.+
T Consensus 162 tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~------P~~~m~~yl~---------------------------- 207 (675)
T KOG0212|consen 162 TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV------PDLEMISYLP---------------------------- 207 (675)
T ss_pred ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC------CcHHHHhcch----------------------------
Confidence 11 111222222344556777777777776544211 1110111000
Q ss_pred hhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHH----h--c
Q 001803 162 ELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW----I--M 235 (1011)
Q Consensus 162 ~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~----~--l 235 (1011)
-|++-+...|.-.+..|---+-.+.. . -
T Consensus 208 ----------------------------------------------~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s 241 (675)
T KOG0212|consen 208 ----------------------------------------------SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS 241 (675)
T ss_pred ----------------------------------------------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc
Confidence 01111122222222222211111100 0 1
Q ss_pred CCHH-HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHHHhCCcccccccccee-----eccCCcH-HHHHHHHH---HHHh
Q 001803 236 SPKE-DVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHYEDFF-----VSSSDSY-QSKALKLE---ILSS 304 (1011)
Q Consensus 236 ap~~-~l~~i~~pLv~LL-~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ff-----v~~~Dp~-~IK~lKLe---IL~~ 304 (1011)
.|.. ...+.+..|+.-+ ++++++|..+|..|..++...|..+-+++...+ |..+++. .||..+-. .|.+
T Consensus 242 ~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~ 321 (675)
T KOG0212|consen 242 SPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLK 321 (675)
T ss_pred CccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHH
Confidence 2322 4566777777655 457999999999999999999988888875533 2333443 56655543 3556
Q ss_pred hcCCCCH------HHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcc----cHHHHHHHHHHHHHhhhccccccCCCCC
Q 001803 305 IVTESSI------SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK----MANTCVEGLLALIRQELLTSDIESGNGE 374 (1011)
Q Consensus 305 Lane~Nv------~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~----~a~~cl~~LL~LLs~~~~~~~~~~~~~~ 374 (1011)
++.+.-- ..|++=|+.|+.+...+-+.++..-|..+-.+.|. ..+.....|++-|+. ..
T Consensus 322 l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd-----------~s 390 (675)
T KOG0212|consen 322 LVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSD-----------RS 390 (675)
T ss_pred HHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcC-----------ch
Confidence 6654433 38999999999998888888999999888888885 335566666666652 33
Q ss_pred CcchhhHHHHHHHHHh
Q 001803 375 ADVLIQSIISIKSIIK 390 (1011)
Q Consensus 375 ~~vV~E~V~vIk~Llq 390 (1011)
+.||-.+..++..|.+
T Consensus 391 d~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 391 DEVVLLALSLLASICS 406 (675)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4466666666666554
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.51 E-value=0.0075 Score=54.38 Aligned_cols=84 Identities=30% Similarity=0.214 Sum_probs=60.9
Q ss_pred HHHHhhc-CCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHH
Q 001803 15 VAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC 93 (1011)
Q Consensus 15 ~aIkk~l-~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc 93 (1011)
.++.+.+ .|++|+||..|+.++.++ .. +..++.+..+|.|.++.|-.+|+.++..+- -......|+
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------~~~~~~~L~ 68 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGEL---GD----PEAIPALIELLKDEDPMVRRAAARALGRIG------DPEAIPALI 68 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCC---TH----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH------HHHTHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHc---CC----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC------CHHHHHHHH
Confidence 3445555 899999999999999943 22 345666777889999999999999999873 234667788
Q ss_pred HhCCCCChhh-HHHHHHHH
Q 001803 94 QILPDVEEWG-QILLIEIL 111 (1011)
Q Consensus 94 ~~L~d~dEWg-Qv~iL~lL 111 (1011)
+.+.+-+.|. +-..+..|
T Consensus 69 ~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhc
Confidence 8887766665 44444443
No 34
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=96.46 E-value=0.2 Score=62.65 Aligned_cols=176 Identities=15% Similarity=0.207 Sum_probs=111.8
Q ss_pred ChhHHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhhhcccc---------cc----CCC-----CCCcchhhHHHHHH
Q 001803 326 DRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSD---------IE----SGN-----GEADVLIQSIISIK 386 (1011)
Q Consensus 326 D~efv~~aI~AIG~~A~k~p-~~a~~cl~~LL~LLs~~~~~~~---------~~----~~~-----~~~~vV~E~V~vIk 386 (1011)
+..+..+-+-++|.|++-+| ......+-.|+.-+....++.+ .. ..+ -...+-+++++.+.
T Consensus 877 ~~~l~~~y~v~~~~~~ql~P~ar~~K~~~lLv~s~~~gssDa~htp~tq~se~p~sqp~~~v~g~~~~~~vra~~vvTla 956 (1529)
T KOG0413|consen 877 ERLLCTAYNVAFSYSPQLVPHARLGKTLSLLVNSTENGSSDAPHTPPTQLSEVPSSQPSSKVEGAMFSDKVRAVGVVTLA 956 (1529)
T ss_pred HHHHHHHhhccccccceeccchhccceeeeeeeeeccCCCCCCCCCccchhhCcccCCCccccccccchHHHHHHHHHHH
Confidence 33444444566788999999 3444444444443332211110 00 000 00112344566666
Q ss_pred HHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Q 001803 387 SIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (1011)
Q Consensus 387 ~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL 466 (1011)
++.-.+....++.+..|++-|+..+....|-.|+-.+|.+|.. ..-+..-++-.++.+..+-+..||-|.+.++++|
T Consensus 957 kmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~---YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rL 1033 (1529)
T KOG0413|consen 957 KMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSS---YTAMTDRYIPMIAASLCDPSVIVRRQTIILLARL 1033 (1529)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHH---HHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 7666677777778888888888888888999999999999841 1113444555667788888999999999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 001803 467 LLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (1011)
Q Consensus 467 ~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL 508 (1011)
+-+.- -.+.=..++.+++.+ -|.+.|||.=|-||..=+
T Consensus 1034 Lq~~~--vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~v 1071 (1529)
T KOG0413|consen 1034 LQFGI--VKWNGELFIRFMLAL--LDANEDIRNDAKFYISEV 1071 (1529)
T ss_pred Hhhhh--hhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHH
Confidence 75431 001112467777665 899999999999997644
No 35
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.44 E-value=0.045 Score=57.02 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=84.4
Q ss_pred CCcchHHHHHHHHHHHHhCCccccccccceeeccCCc-HHHHHHHHHHHHhhcCCCCHH---HHHHHHHHhhccCChhHH
Q 001803 255 SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSIS---SVFKEFQDYIRDPDRRFA 330 (1011)
Q Consensus 255 ~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp-~~IK~lKLeIL~~Lane~Nv~---~IL~EL~~Yv~~~D~efv 330 (1011)
+|.+|-.++-.+.-|+.++|+++++|...+|-+..|+ ..||+..|-+|+.|..++-++ .++.++...+.|.|.+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 3567778888899999999999999999999777776 789999999999999887653 566888889999999999
Q ss_pred HHHHHHHHHHHhh-CcccHHHHHHHHH
Q 001803 331 ADTVAAIGLCARK-LPKMANTCVEGLL 356 (1011)
Q Consensus 331 ~~aI~AIG~~A~k-~p~~a~~cl~~LL 356 (1011)
..|...+..++.+ .|.....++--++
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999998 6665544433333
No 36
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=96.19 E-value=0.2 Score=59.34 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=71.2
Q ss_pred HHHHHhhCCcchHHHHHHHHHhhhccCc----hhHHHHhhhhhccccCCCCCccccHHHHHHHHHHh----------hc-
Q 001803 385 IKSIIKQDPSCHEKVIIQLFRSLDSIKV----PEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWC----------FK- 449 (1011)
Q Consensus 385 Ik~Llq~~P~~~~~ii~~L~~~Ld~I~~----p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~----------F~- 449 (1011)
+-.+.+++|......-..|.+.+.+... .+.-..++|+||||+...- -..+-.++++.+.+. ..
T Consensus 292 ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlvWaIGEy~s~~~-d~rct~~~i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 292 LLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLVWAIGEYLSVSY-DRRCTVEQINEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHHHHHhccccccc-CCccCHHHHHHHHHHHHHHHHHHhhccc
Confidence 4556678887644433444444443332 2333467899999986321 122223333333221 11
Q ss_pred -------cChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHc-------cC--CChHHHhHHHHHHHHccCC
Q 001803 450 -------SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE-------CD--LNYDVRDRARFFKKLFSHN 511 (1011)
Q Consensus 450 -------~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~-------~D--~n~DVRDRAr~y~~LL~~~ 511 (1011)
..+..+-.-++|+.+||..+.++-.. ++...+..+-.++. ++ .+..|..||.+|.+||+.+
T Consensus 371 ~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~p-Rv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~P 447 (459)
T PF14764_consen 371 DPSASRPSSQPRLMTVLMTALAKLASRSQDLIP-RVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMP 447 (459)
T ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCHhhhH-HHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCc
Confidence 23345667789999999998875332 34333333322111 34 3789999999999999863
No 37
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.42 Score=58.12 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=68.3
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHH---HHhCC------
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAF---ASICP------ 79 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af---~EIcP------ 79 (1011)
.-..+...+-....|..+-||+.|+.|+..|..--. -. ..+.....++++|.+-.|-.+|+.++ -..||
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~-~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LS-KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccccc-cc-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 344556668888999999999999999998887322 22 23555667899999999999997664 46674
Q ss_pred -CcccchHHHHHHHHHhCCCC
Q 001803 80 -NNFTLIGRNYRNLCQILPDV 99 (1011)
Q Consensus 80 -~r~dLihk~yrkLc~~L~d~ 99 (1011)
++..+.-..|+++|+.+.|.
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~ 293 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDR 293 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcC
Confidence 24678888999999999883
No 38
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.78 E-value=0.25 Score=61.91 Aligned_cols=174 Identities=12% Similarity=0.180 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhhccCCh--hHHHHHHHHHHHHHhhC----cccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHH
Q 001803 311 ISSVFKEFQDYIRDPDR--RFAADTVAAIGLCARKL----PKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS 384 (1011)
Q Consensus 311 v~~IL~EL~~Yv~~~D~--efv~~aI~AIG~~A~k~----p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~v 384 (1011)
++.|+..|..|+.-... .+..++..-++..-.|| |......+..++.-+.. . ...|..-+|..
T Consensus 129 ~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s----------~-R~aVrKkai~~ 197 (1233)
T KOG1824|consen 129 CKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQS----------P-RLAVRKKAITA 197 (1233)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccC----------h-HHHHHHHHHHH
Confidence 45677777777754322 24445555555554454 56666666667665543 1 22355556777
Q ss_pred HHHHHhh-CCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccC-----CCCCccccHHHHHHHHHHhhccChHHHHHH
Q 001803 385 IKSIIKQ-DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSS-----VGVKIPRMLTTVLKYLAWCFKSEAVETKLQ 458 (1011)
Q Consensus 385 Ik~Llq~-~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~-----~~e~ip~ia~dvLR~l~k~F~~E~~~VKlq 458 (1011)
|-.+.-. +-+.+.+++.+|.+-|..-..+.+....|-++|+-|. .+.+.+.+.|-+..+..+ -..++++.|-.
T Consensus 198 l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~-~e~~dDELrE~ 276 (1233)
T KOG1824|consen 198 LGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNK-IEEDDDELREY 276 (1233)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcc-cccCcHHHHHH
Confidence 7777654 4456888899998888766666666666778887542 223566777766665532 25567889999
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChH
Q 001803 459 ILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYD 496 (1011)
Q Consensus 459 ILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~D 496 (1011)
.|.++--+..++|.+.......+.+-+++.-.||.||.
T Consensus 277 ~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~ 314 (1233)
T KOG1824|consen 277 CLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYN 314 (1233)
T ss_pred HHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCC
Confidence 99988888888887654333334444444447998653
No 39
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.72 E-value=0.012 Score=43.88 Aligned_cols=29 Identities=34% Similarity=0.374 Sum_probs=24.8
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhc
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHE 41 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ 41 (1011)
+++.+.+++.|++|-||++|+.|+.++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677899999999999999999999875
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.62 E-value=2.4 Score=51.94 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc
Q 001803 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1011)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r 81 (1011)
....++=..+-+++.|.+|.+|-+.-+-|.-+....--..-+++.+.+..||.-.+...--.|+-|+..||.|.
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhh
Confidence 45667777778899999999999887777766665331245677777788888777677778899999999775
No 41
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.58 E-value=0.57 Score=51.93 Aligned_cols=166 Identities=19% Similarity=0.190 Sum_probs=113.4
Q ss_pred CCChhhHHHHHHHHHHHhccC--hhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC--cccchHHHHHHHHHhCC
Q 001803 23 DPSVFVRKCAANALPKLHELR--QEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYRNLCQILP 97 (1011)
Q Consensus 23 D~SPYVRKtAA~AI~Kly~ld--pe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~--r~dLihk~yrkLc~~L~ 97 (1011)
...|+++..|.+++.++-... .+- ..-..+.+|..+|.+.+|.|--.|+.|+..+..+ +-..|.-++.++|+.+.
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 467999999999999864332 211 1123567889999999999999999999988764 34567778889998765
Q ss_pred C--CChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcccccccc
Q 001803 98 D--VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGL 175 (1011)
Q Consensus 98 d--~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~i~~~ 175 (1011)
. +|.-.|..-|++|+....++.. . .+
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~---------------------------------------~----~~--------- 131 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDY---------------------------------------H----HM--------- 131 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcch---------------------------------------h----hh---------
Confidence 4 5778899999999987632100 0 00
Q ss_pred ccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHH-HH-----HHHHHHH
Q 001803 176 GEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED-VK-----RIVKPLL 249 (1011)
Q Consensus 176 de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~-l~-----~i~~pLv 249 (1011)
+...+..+.+||.+.|.-+-..|.++.++++-... .+ ++...++
T Consensus 132 ------------------------------l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~ 181 (254)
T PF04826_consen 132 ------------------------------LANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFL 181 (254)
T ss_pred ------------------------------HHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHH
Confidence 01123334578888888888899999999875322 22 2445677
Q ss_pred HHhcc--CCcchHHHHHHHHHHH
Q 001803 250 FILRS--SGASKYVVLCNIQVFA 270 (1011)
Q Consensus 250 ~LL~s--~~eiqYvvL~~I~~i~ 270 (1011)
.|+.+ +.++-..+|.-+.-|.
T Consensus 182 ~Lf~~~~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 182 SLFNSSESKENLLRVLTFFENIN 204 (254)
T ss_pred HHHccCCccHHHHHHHHHHHHHH
Confidence 88865 3566666666555554
No 42
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=95.48 E-value=1.7 Score=54.72 Aligned_cols=288 Identities=19% Similarity=0.247 Sum_probs=159.5
Q ss_pred hhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChh---h-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc-
Q 001803 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE---E-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN- 81 (1011)
Q Consensus 7 p~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe---~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r- 81 (1011)
..|+++++ +++...+.-+.=.|+-.+-||- ..++ . -...+++.|-+||.-++..++-.|+.++..+.=+.
T Consensus 289 ~~iV~~Lv----~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~ 363 (708)
T PF05804_consen 289 KGIVSLLV----KCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE 363 (708)
T ss_pred cCCHHHHH----HHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH
Confidence 34455544 5555556666655555555553 3321 1 33347777888888778888899999999987442
Q ss_pred --ccchH-HHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001803 82 --FTLIG-RNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1011)
Q Consensus 82 --~dLih-k~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (1011)
-.++. +.+-+|+.+|.+ +.+. .+.+.+|...+..... + .||..
T Consensus 364 ~R~~mV~~GlIPkLv~LL~d-~~~~-~val~iLy~LS~dd~~--r--~~f~~---------------------------- 409 (708)
T PF05804_consen 364 LRSQMVSLGLIPKLVELLKD-PNFR-EVALKILYNLSMDDEA--R--SMFAY---------------------------- 409 (708)
T ss_pred HHHHHHHCCCcHHHHHHhCC-CchH-HHHHHHHHHhccCHhh--H--HHHhh----------------------------
Confidence 22221 245688888875 3444 4567777766532100 0 01110
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH
Q 001803 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238 (1011)
Q Consensus 159 ~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~ 238 (1011)
++ + +..+++. ++.+.+..|-.+++.+.+.++..
T Consensus 410 --Td---------------c---------------------------Ip~L~~~---Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 410 --TD---------------C---------------------------IPQLMQM---LLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred --cc---------------h---------------------------HHHHHHH---HHhCCCccccHHHHHHHHHHhcC
Confidence 00 0 1111111 22233344434444444444421
Q ss_pred H----HHH--HHHHHHHH-HhccCCcchHHHHHHHHHHHHhCC---cccccccccee--eccCCcHHHHHHHHHHHHhhc
Q 001803 239 E----DVK--RIVKPLLF-ILRSSGASKYVVLCNIQVFAKALP---HLFVPHYEDFF--VSSSDSYQSKALKLEILSSIV 306 (1011)
Q Consensus 239 ~----~l~--~i~~pLv~-LL~s~~eiqYvvL~~I~~i~~~~p---~lF~~~l~~Ff--v~~~Dp~~IK~lKLeIL~~La 306 (1011)
. .+- .-.+.|+. .++.. --+.+..|.-|++..+ .+|.+|+..+- +...|.......-|-+|.+|+
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~---D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTR---DPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcc---cHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 1 110 11223332 22221 1234445555555442 36777765433 345566677777788888887
Q ss_pred CC-CCHHHHHHH--HHHhhc------cCChhHHHHHHHHHHHHHhhCcccHH-----HHHHHHHHHHHhhhccccccCCC
Q 001803 307 TE-SSISSVFKE--FQDYIR------DPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGN 372 (1011)
Q Consensus 307 ne-~Nv~~IL~E--L~~Yv~------~~D~efv~~aI~AIG~~A~k~p~~a~-----~cl~~LL~LLs~~~~~~~~~~~~ 372 (1011)
.+ -++..++++ |..|+. ..++++.-++|..+|.+|. .+..+. .++..|+.||+.. .
T Consensus 520 ~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~k---------q 589 (708)
T PF05804_consen 520 IPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAK---------Q 589 (708)
T ss_pred cCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhh---------C
Confidence 44 388888886 555554 2456899999999998874 444443 3478899998742 1
Q ss_pred CCCcchhhHHHHHHHHHhhCC
Q 001803 373 GEADVLIQSIISIKSIIKQDP 393 (1011)
Q Consensus 373 ~~~~vV~E~V~vIk~Llq~~P 393 (1011)
.|+..|.|.+-++-+++...+
T Consensus 590 eDdE~VlQil~~f~~ll~h~~ 610 (708)
T PF05804_consen 590 EDDEIVLQILYVFYQLLFHEE 610 (708)
T ss_pred chHHHHHHHHHHHHHHHcChH
Confidence 244578888878888886643
No 43
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.41 E-value=0.3 Score=59.20 Aligned_cols=200 Identities=15% Similarity=0.146 Sum_probs=121.4
Q ss_pred cchHHHHHHHHHHHHhCC--ccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHH----HHHHHHHhhccCChhHH
Q 001803 257 ASKYVVLCNIQVFAKALP--HLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISS----VFKEFQDYIRDPDRRFA 330 (1011)
Q Consensus 257 eiqYvvL~~I~~i~~~~p--~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~----IL~EL~~Yv~~~D~efv 330 (1011)
.-++-.|..+..-....+ +-|...+ .|-|..+.....-....+||..+........ +...|+.-+.+.++.++
T Consensus 16 ~~~~~~L~~l~~~~~~~~~l~~~~~~~-lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr 94 (503)
T PF10508_consen 16 AERLEALPELKTELSSSPFLERLPEPV-LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVR 94 (503)
T ss_pred cchHHHHHHHHHHHhhhhHHHhchHHH-HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 444555555555444333 2222222 3334433322233455577777766655544 55556666678888899
Q ss_pred HHHHHHHHHHHhhCcccH-----HHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHH-----H
Q 001803 331 ADTVAAIGLCARKLPKMA-----NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV-----I 400 (1011)
Q Consensus 331 ~~aI~AIG~~A~k~p~~a-----~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~i-----i 400 (1011)
+-++++|++++..-.... ..++..++.+|.. .+..|...++..|+.|....+ ....+ +
T Consensus 95 ~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-----------~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~ 162 (503)
T PF10508_consen 95 RLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-----------PDLSVAKAAIKALKKLASHPE-GLEQLFDSNLL 162 (503)
T ss_pred HHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC-----------CcHHHHHHHHHHHHHHhCCch-hHHHHhCcchH
Confidence 999999999987654422 3456666676652 344466667778888875433 33333 4
Q ss_pred HHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHH--HHHHHHHhhccChHHHHHHHHHHHHHHhhhc
Q 001803 401 IQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTT--VLKYLAWCFKSEAVETKLQILNTTIKVLLCA 470 (1011)
Q Consensus 401 ~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~d--vLR~l~k~F~~E~~~VKlqILta~aKL~~~~ 470 (1011)
.+|...+.. ..+..|..+.+++.+-+...+.....+.+ ++..+.+.+.+++..||+-.+.++..|....
T Consensus 163 ~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~ 233 (503)
T PF10508_consen 163 SKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP 233 (503)
T ss_pred HHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh
Confidence 455554433 24567888888888876432222222333 6778888888888999999999999887633
No 44
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.30 E-value=0.034 Score=46.34 Aligned_cols=52 Identities=33% Similarity=0.226 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHhccChhh---hHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q 001803 26 VFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASI 77 (1011)
Q Consensus 26 PYVRKtAA~AI~Kly~ldpe~---~~~~L~eil~~LL~D~dp~VvgsAv~Af~EI 77 (1011)
|.||+.|+.||..+-...++. ..+.+.+.|..+|.|.++.|-.+|+.|+-+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 689999999999766555532 5567888888899999999999999998654
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=95.24 E-value=3.8 Score=48.77 Aligned_cols=210 Identities=11% Similarity=0.107 Sum_probs=108.2
Q ss_pred HHHHHHHHhccC---CcchHHHHHHHHHHHHhCCcccccccc--ceee------ccCCcHHHHHHHHHHHHhhcCCCC--
Q 001803 244 IVKPLLFILRSS---GASKYVVLCNIQVFAKALPHLFVPHYE--DFFV------SSSDSYQSKALKLEILSSIVTESS-- 310 (1011)
Q Consensus 244 i~~pLv~LL~s~---~eiqYvvL~~I~~i~~~~p~lF~~~l~--~Ffv------~~~Dp~~IK~lKLeIL~~Lane~N-- 310 (1011)
.+++|+.+|++. ..++|-+|-++=.++-..+ ....+. .++. +..--.-|-|..+-+|.+|.+...
T Consensus 186 ~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~--~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~ 263 (429)
T cd00256 186 GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH--AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDR 263 (429)
T ss_pred CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH--HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccccc
Confidence 567888888763 3678888888766653322 111111 1111 111123566777888888887431
Q ss_pred -----H-HHHHH-HHHHhh------ccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcc
Q 001803 311 -----I-SSVFK-EFQDYI------RDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV 377 (1011)
Q Consensus 311 -----v-~~IL~-EL~~Yv------~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~v 377 (1011)
+ ..++. .+..++ +-.|.++..+.-.--..+..++...+.+ +-...=+....+.-...|. ++.+
T Consensus 264 ~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsf--D~Y~~El~sg~L~WSp~H~--se~F 339 (429)
T cd00256 264 EVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSF--DEYKSELRSGRLHWSPVHK--SEKF 339 (429)
T ss_pred chhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHhcCCccCCCCCC--CchH
Confidence 1 12222 222221 2356666655544444444443322110 1111111111111112231 2223
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHH------HHHhhccC
Q 001803 378 LIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKY------LAWCFKSE 451 (1011)
Q Consensus 378 V~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~------l~k~F~~E 451 (1011)
=.|-+. ++ .+...+++++|++.|++-.+|...|....=||||+... |.. -.++.+ +.+-...+
T Consensus 340 W~EN~~---kf----~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~---P~g-r~i~~~lg~K~~vM~Lm~h~ 408 (429)
T cd00256 340 WRENAD---RL----NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY---PRG-KDVVEQLGGKQRVMRLLNHE 408 (429)
T ss_pred HHHHHH---HH----HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC---ccH-HHHHHHcCcHHHHHHHhcCC
Confidence 333222 22 12235788999999976678888887789999998642 321 122111 12223467
Q ss_pred hHHHHHHHHHHHHHHhhhc
Q 001803 452 AVETKLQILNTTIKVLLCA 470 (1011)
Q Consensus 452 ~~~VKlqILta~aKL~~~~ 470 (1011)
+++||-+.|.+.-|+.+++
T Consensus 409 d~~Vr~eAL~avQklm~~~ 427 (429)
T cd00256 409 DPNVRYEALLAVQKLMVHN 427 (429)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 8999999999999997653
No 46
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=94.94 E-value=1.3 Score=55.56 Aligned_cols=284 Identities=14% Similarity=0.184 Sum_probs=162.2
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHH----HHH--HHHHHHHHhccCCcchHHHHHHHHHHHHh--CCcccc--
Q 001803 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKED----VKR--IVKPLLFILRSSGASKYVVLCNIQVFAKA--LPHLFV-- 278 (1011)
Q Consensus 209 LL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~----l~~--i~~pLv~LL~s~~eiqYvvL~~I~~i~~~--~p~lF~-- 278 (1011)
++..+..+|++.|.-++-.+.++.+.++-... +-. ++..|+.||.. ++.+.+++..++.|+.. ...+|.
T Consensus 332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-~~~~~val~iLy~LS~dd~~r~~f~~T 410 (708)
T PF05804_consen 332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-PNFREVALKILYNLSMDDEARSMFAYT 410 (708)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-CchHHHHHHHHHHhccCHhhHHHHhhc
Confidence 45667788899999999999999999975332 222 56788888874 56778888888888753 334554
Q ss_pred ---ccccceeeccCCcHHHHHHHHHHHHhhcC-CCCHHHHHHH-----HHHhhccCChhHHHHHHHHHHHHHhhCcccHH
Q 001803 279 ---PHYEDFFVSSSDSYQSKALKLEILSSIVT-ESSISSVFKE-----FQDYIRDPDRRFAADTVAAIGLCARKLPKMAN 349 (1011)
Q Consensus 279 ---~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lan-e~Nv~~IL~E-----L~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~ 349 (1011)
|.+-.+.....++ .+...-+-++.+|+. +.|++.+.+. |...+-.....+.-+.||.| +..-++.-.
T Consensus 411 dcIp~L~~~Ll~~~~~-~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi---S~h~~~~k~ 486 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEE-EVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI---SQHDGPLKE 486 (708)
T ss_pred chHHHHHHHHHhCCCc-cccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH---HhcCchHHH
Confidence 2333332222332 355555777777774 6677766652 33333222223333444444 444334333
Q ss_pred HHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHH------HHHHHhhh-ccCchhHHHHhhhh
Q 001803 350 TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVI------IQLFRSLD-SIKVPEARVMIIWM 422 (1011)
Q Consensus 350 ~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii------~~L~~~Ld-~I~~p~ArAsIiWL 422 (1011)
..++++.+|+..- .. ..++..+.|++-.+.+|-..+. .+..++ ..|.+.|. ....++..--++=+
T Consensus 487 ~f~~~i~~L~~~v--~~-----~~~ee~~vE~LGiLaNL~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~ 558 (708)
T PF05804_consen 487 LFVDFIGDLAKIV--SS-----GDSEEFVVECLGILANLTIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVIL 558 (708)
T ss_pred HHHHHHHHHHHHh--hc-----CCcHHHHHHHHHHHHhcccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHH
Confidence 4444444444320 00 1234578888877777633221 233333 33334332 12334444444555
Q ss_pred hccccCCCC---Cc--cccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHH---HHHHHHHHHHHccCCC
Q 001803 423 VGEYSSVGV---KI--PRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTI---TRLFSYLLELAECDLN 494 (1011)
Q Consensus 423 IGEY~~~~e---~i--p~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l---~~L~qyVL~La~~D~n 494 (1011)
+|--+..-. .+ ..+++.++..| +=.+|+++.-+||+-++-++..+.+.- +.+ ..+..|++.+ ..|.|
T Consensus 559 ~gtla~d~~~A~lL~~sgli~~Li~LL--~~kqeDdE~VlQil~~f~~ll~h~~tr--~~ll~~~~~~~ylidL-~~d~N 633 (708)
T PF05804_consen 559 LGTLASDPECAPLLAKSGLIPTLIELL--NAKQEDDEIVLQILYVFYQLLFHEETR--EVLLKETEIPAYLIDL-MHDKN 633 (708)
T ss_pred HHHHHCCHHHHHHHHhCChHHHHHHHH--HhhCchHHHHHHHHHHHHHHHcChHHH--HHHHhccchHHHHHHH-hcCCC
Confidence 665432100 00 12233344433 224678899999999999998876431 111 2467788887 57899
Q ss_pred hHHHhHHHHHHHHccC
Q 001803 495 YDVRDRARFFKKLFSH 510 (1011)
Q Consensus 495 ~DVRDRAr~y~~LL~~ 510 (1011)
.+||.=|-.-.-++..
T Consensus 634 ~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 634 AEIRKVCDNALDIIAE 649 (708)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988877777753
No 47
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=6.3 Score=49.21 Aligned_cols=355 Identities=15% Similarity=0.152 Sum_probs=199.5
Q ss_pred hhhhHHHHHHHHh---hcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC----C
Q 001803 7 HVISPLVLVAVGK---CARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC----P 79 (1011)
Q Consensus 7 p~I~piv~~aIkk---~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc----P 79 (1011)
+.++|.++..+.| +-.|..+-+-|+|.-|+.=+-+...++-.+.+.+.++.=+...|=-=.-+|++||-.|. |
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~ 397 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEP 397 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCch
Confidence 4778888888877 55556677788888777755555554455677788887777666666678888988774 3
Q ss_pred Ccc-cchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001803 80 NNF-TLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1011)
Q Consensus 80 ~r~-dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (1011)
+++ .+.+.....+++++.|-.=|-.-..=--|.|-+ ++ +.+..
T Consensus 398 ~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~--d~------------l~e~~---------------------- 441 (859)
T KOG1241|consen 398 DKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA--DF------------LPEAI---------------------- 441 (859)
T ss_pred hhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH--hh------------chhhc----------------------
Confidence 333 345566677777776644443222222222222 00 00000
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhcc--CCChHHHHHHHHHHHhcC
Q 001803 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLW--SHNSAVVLAAAGVHWIMS 236 (1011)
Q Consensus 159 ~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLq--S~NsAVVlaaa~l~~~la 236 (1011)
++. .++...+.-+++ +..|=|.-.|+..+..++
T Consensus 442 --------------------------------------------~n~-~~l~~~l~~l~~gL~DePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 442 --------------------------------------------INQ-ELLQSKLSALLEGLNDEPRVASNVCWAFISLA 476 (859)
T ss_pred --------------------------------------------ccH-hhhhHHHHHHHHHhhhCchHHHHHHHHHHHHH
Confidence 000 000111111222 233556666666655443
Q ss_pred -------CH--------HHHHHHHHHHHHHhc----cCCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHH
Q 001803 237 -------PK--------EDVKRIVKPLLFILR----SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKAL 297 (1011)
Q Consensus 237 -------p~--------~~l~~i~~pLv~LL~----s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~l 297 (1011)
+. ..+..+++.|+.--. ...|.|-.+...+-.|+...|+-..+-+..|+. +-..
T Consensus 477 ea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l-------~il~ 549 (859)
T KOG1241|consen 477 EAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTL-------VILE 549 (859)
T ss_pred HHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-------HHHH
Confidence 11 135667777765432 247889999999999998888665554333321 2222
Q ss_pred HHHHHHhhcCCCCH--HHHHHHHHHhhccCChhHHHHHHH-HHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCC
Q 001803 298 KLEILSSIVTESSI--SSVFKEFQDYIRDPDRRFAADTVA-AIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGE 374 (1011)
Q Consensus 298 KLeIL~~Lane~Nv--~~IL~EL~~Yv~~~D~efv~~aI~-AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~ 374 (1011)
||+=-.. ..-.+. ..=++||+.-+- ..++ -|.+.+.+++++++..+..+++++.. ++
T Consensus 550 kl~q~i~-~~~l~~~dr~q~~eLQs~Lc--------~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s-----------~~ 609 (859)
T KOG1241|consen 550 KLDQTIS-SQILSLADRAQLNELQSLLC--------NTLQSIIRKVGSDIREVSDQIMGLFLRIFES-----------KR 609 (859)
T ss_pred HHHHHHH-HHhccHhhHHHHHHHHHHHH--------HHHHHHHHHccccchhHHHHHHHHHHHHHcC-----------Cc
Confidence 2221111 000000 112233333211 1121 12334447888999999999998874 12
Q ss_pred Ccchhh-HHHHHHHHHhhCCcchH----HHHHHHHHhhhccCchhHHHHhhhhhccccCCC--CCccccHHHHHHHHHHh
Q 001803 375 ADVLIQ-SIISIKSIIKQDPSCHE----KVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVG--VKIPRMLTTVLKYLAWC 447 (1011)
Q Consensus 375 ~~vV~E-~V~vIk~Llq~~P~~~~----~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~--e~ip~ia~dvLR~l~k~ 447 (1011)
..++.| +...+-.++..--..+. .....|..-|.+.++-...++.+=++|.-+... +..|+ +.++...|++.
T Consensus 610 s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py-~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 610 SAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPY-CDELMTVLVQC 688 (859)
T ss_pred cccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHH
Confidence 234444 44445555433222222 345556666666777778888899999987532 23566 67888889988
Q ss_pred hccC--hHHHHHHHHHHHHHHhhhc
Q 001803 448 FKSE--AVETKLQILNTTIKVLLCA 470 (1011)
Q Consensus 448 F~~E--~~~VKlqILta~aKL~~~~ 470 (1011)
...+ +..||-+||..+.-+.+--
T Consensus 689 Lss~~~hR~vKP~IlS~FgDIAlaI 713 (859)
T KOG1241|consen 689 LSSPNLHRNVKPAILSVFGDIALAI 713 (859)
T ss_pred ccCccccccccchHHHHHHHHHHHH
Confidence 8766 4689999999988887654
No 48
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=13 Score=46.51 Aligned_cols=355 Identities=17% Similarity=0.194 Sum_probs=192.9
Q ss_pred chhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh--hHHHHHHHHHHHhc--CCChhHHHHHHHHHHHh---C
Q 001803 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE--ITSAIEEIVGILLN--DRSPGVVGAAAAAFASI---C 78 (1011)
Q Consensus 6 Vp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~--~~~~L~eil~~LL~--D~dp~VvgsAv~Af~EI---c 78 (1011)
+.-|++-.++.|-+.+.|++-.||.|||-++.|+.+..|+- ....+..++..|+. -..|-|..++--||..+ |
T Consensus 400 Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 400 LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAA 479 (859)
T ss_pred hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHH
Confidence 44566667788899999999999999999999999988742 34445555555543 33789999988776544 3
Q ss_pred C----Cc--ccchHHHHHHHHHhCCCCChh-------hHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCccccccc
Q 001803 79 P----NN--FTLIGRNYRNLCQILPDVEEW-------GQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDV 145 (1011)
Q Consensus 79 P----~r--~dLihk~yrkLc~~L~d~dEW-------gQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~ 145 (1011)
+ .+ -+...+.|-.+++.|....+- ..+..-+.|+...+..+.-+-|.. . +.
T Consensus 480 ~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v-----~-----------~~ 543 (859)
T KOG1241|consen 480 YEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMV-----Q-----------KL 543 (859)
T ss_pred HHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHH-----H-----------HH
Confidence 2 23 123336666666666433222 233333333322211100000000 0 00
Q ss_pred ccccccCCCCCCccchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHH
Q 001803 146 NVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVV 225 (1011)
Q Consensus 146 ~~~l~~q~~~~~~~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVV 225 (1011)
... .+ +..++.+. +..++-+-+.=++- || +++
T Consensus 544 ~l~----------------il------~kl~q~i~------------------~~~l~~~dr~q~~e----LQ----s~L 575 (859)
T KOG1241|consen 544 TLV----------------IL------EKLDQTIS------------------SQILSLADRAQLNE----LQ----SLL 575 (859)
T ss_pred HHH----------------HH------HHHHHHHH------------------HHhccHhhHHHHHH----HH----HHH
Confidence 000 00 00000000 00000000000011 11 223
Q ss_pred HHHHHHHHh-cCC--HHHHHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHhCCccccccccceeec------cCCcHHH
Q 001803 226 LAAAGVHWI-MSP--KEDVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS------SSDSYQS 294 (1011)
Q Consensus 226 laaa~l~~~-lap--~~~l~~i~~pLv~LL~s--~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~------~~Dp~~I 294 (1011)
.++.+.+.. +.+ ++....+...|+|++.+ +.-++=-++-.|..++..-..=|.+|+..|+.. .-+..++
T Consensus 576 c~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qV 655 (859)
T KOG1241|consen 576 CNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQV 655 (859)
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHH
Confidence 333333322 222 23445666777888876 344566666667777766666777777766542 2334678
Q ss_pred HHHHHHHHHhhcC--CCCHH----HHHHHHHHhhccC--ChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccc
Q 001803 295 KALKLEILSSIVT--ESSIS----SVFKEFQDYIRDP--DRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTS 366 (1011)
Q Consensus 295 K~lKLeIL~~Lan--e~Nv~----~IL~EL~~Yv~~~--D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~ 366 (1011)
..-.+-+...|++ ++++- .++.-|...+.+. +.+++...+...|-+|..+......+++..+.++.+-..
T Consensus 656 c~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~-- 733 (859)
T KOG1241|consen 656 CAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASS-- 733 (859)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--
Confidence 8888888888876 44443 4555555566554 567888888999999999999999999999999986321
Q ss_pred cccCCCCCCcchhhHH-----------HHHHHHHhhC--CcchHHHHHHHHHhhhccCc-----hhHHHHhhhhhccccC
Q 001803 367 DIESGNGEADVLIQSI-----------ISIKSIIKQD--PSCHEKVIIQLFRSLDSIKV-----PEARVMIIWMVGEYSS 428 (1011)
Q Consensus 367 ~~~~~~~~~~vV~E~V-----------~vIk~Llq~~--P~~~~~ii~~L~~~Ld~I~~-----p~ArAsIiWLIGEY~~ 428 (1011)
...++.+.-..+.+ +.|-+=+..+ +......+.++...++.|.. ..+-++++=+||.-+.
T Consensus 734 --~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~ 811 (859)
T KOG1241|consen 734 --VQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLAT 811 (859)
T ss_pred --ccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 11111111112222 2222222332 22333456677777766632 2345566788887654
No 49
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.34 E-value=2.1 Score=50.70 Aligned_cols=225 Identities=14% Similarity=0.050 Sum_probs=143.9
Q ss_pred HHHHHHHHhhc-CCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHH
Q 001803 11 PLVLVAVGKCA-RDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNY 89 (1011)
Q Consensus 11 piv~~aIkk~l-~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~y 89 (1011)
|-.+..+...+ .|.++-||..|+.++... +. +..++.+...|.|.++.|-.+++.||-++-... ..
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~----~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~------a~ 119 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLAQ---ED----ALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQ------AE 119 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhcc---CC----hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchH------HH
Confidence 44445555555 588999999988888522 22 122444556788999999999999999986554 56
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcc
Q 001803 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR 169 (1011)
Q Consensus 90 rkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~ 169 (1011)
..|+..|.+-+++.+..++..|..-.. . |
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~~-~-----~--------------------------------------------- 148 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHRH-D-----P--------------------------------------------- 148 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhcc-C-----h---------------------------------------------
Confidence 679999999999999888877665210 0 0
Q ss_pred ccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 001803 170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL 249 (1011)
Q Consensus 170 ~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv 249 (1011)
...+.++|++.++.|--+++++.-.+... .....|.
T Consensus 149 ----------------------------------------~~~L~~~L~d~d~~Vra~A~raLG~l~~~----~a~~~L~ 184 (410)
T TIGR02270 149 ----------------------------------------GPALEAALTHEDALVRAAALRALGELPRR----LSESTLR 184 (410)
T ss_pred ----------------------------------------HHHHHHHhcCCCHHHHHHHHHHHHhhccc----cchHHHH
Confidence 01345677888999999999987666543 2333455
Q ss_pred HHhcc-CCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChh
Q 001803 250 FILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRR 328 (1011)
Q Consensus 250 ~LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~e 328 (1011)
..+.+ +++||..++..+..+-. +.... .+..|+-...-| ....-..+|...-++ .++.-|...+.+.+
T Consensus 185 ~al~d~~~~VR~aA~~al~~lG~--~~A~~-~l~~~~~~~g~~--~~~~l~~~lal~~~~----~a~~~L~~ll~d~~-- 253 (410)
T TIGR02270 185 LYLRDSDPEVRFAALEAGLLAGS--RLAWG-VCRRFQVLEGGP--HRQRLLVLLAVAGGP----DAQAWLRELLQAAA-- 253 (410)
T ss_pred HHHcCCCHHHHHHHHHHHHHcCC--HhHHH-HHHHHHhccCcc--HHHHHHHHHHhCCch----hHHHHHHHHhcChh--
Confidence 55654 68999999998866522 33332 333344333322 333333344433222 56666666666543
Q ss_pred HHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 329 fv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
+...++.++|.+.. |. .+.+|+.++.
T Consensus 254 vr~~a~~AlG~lg~--p~----av~~L~~~l~ 279 (410)
T TIGR02270 254 TRREALRAVGLVGD--VE----AAPWCLEAMR 279 (410)
T ss_pred hHHHHHHHHHHcCC--cc----hHHHHHHHhc
Confidence 78888999997653 33 4556666664
No 50
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=94.32 E-value=0.43 Score=44.90 Aligned_cols=92 Identities=23% Similarity=0.324 Sum_probs=60.3
Q ss_pred CCCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCC
Q 001803 738 NGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEI 817 (1011)
Q Consensus 738 ~g~GL~v~Y~F~r~p~~~~~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I 817 (1011)
.++||.|.|++.|.+ ..+.|.++|.|.+..+|+++.+.=- -|.++... +.+.. -
T Consensus 3 ~~~~l~I~~~~~~~~-----~~~~i~~~~~N~s~~~it~f~~~~a----vpk~~~l~----------------l~~~s-~ 56 (104)
T smart00809 3 EKNGLQIGFKFERRP-----GLIRITLTFTNKSPSPITNFSFQAA----VPKSLKLQ----------------LQPPS-S 56 (104)
T ss_pred cCCCEEEEEEEEcCC-----CeEEEEEEEEeCCCCeeeeEEEEEE----cccceEEE----------------EcCCC-C
Confidence 367999999999874 4689999999999999999998642 24443211 22211 1
Q ss_pred cccCCCCeeEEEEEEecCC-CCccceEEEEEcCCeeeeE
Q 001803 818 TSLEPGQTMKRILEVRFHH-HLLPLKLALHCNGKKLPVK 855 (1011)
Q Consensus 818 ~~L~pg~s~~~~lgidF~~-~~~~~~~~l~~~~~~~~v~ 855 (1011)
..|+||+.++-.|.|.=.. ...++++.+...-+.-+++
T Consensus 57 ~~l~p~~~i~q~~~i~~~~~~~~~~~~~vsy~~~g~~~~ 95 (104)
T smart00809 57 PTLPPGGQITQVLKVENPGKFPLRLRLRLSYLLGGSAVT 95 (104)
T ss_pred CccCCCCCEEEEEEEECCCCCCEEEEEEEEEEECCEEEE
Confidence 4689999888887775322 2245556665543333443
No 51
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform
Probab=94.19 E-value=0.36 Score=46.43 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=80.2
Q ss_pred ccccCCHHHHHHHhhcCCCCccccceeecccCcCcccccccchhhccchhhhhHHHHHHHhhhcccceeeecCccccccc
Q 001803 865 KPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKF 944 (1011)
Q Consensus 865 ~p~~ms~~~f~~~~~~L~GM~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~~ 944 (1011)
||..||-++|=+.=++++ ||. +.+++...+ .....+.+++.+.+|++.|-.=
T Consensus 1 RPl~isTeeFG~~W~s~~--~e~--k~~l~~~~~-----------------~t~~~~l~~l~~~l~lh~VevI------- 52 (104)
T PF14807_consen 1 RPLQISTEEFGQLWLSFS--NER--KQNLPSSSQ-----------------RTLPEFLQRLQQKLRLHVVEVI------- 52 (104)
T ss_pred CCccccHHHHHHHHHcCC--CeE--EEeccccCc-----------------CCHHHHHHHHHHhcCceEEEEe-------
Confidence 799999999988888776 566 444431111 1224677889999999999752
Q ss_pred CCCCCCceeeeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHHhc
Q 001803 945 DDASGLSLRFSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV 1005 (1011)
Q Consensus 945 ~~~~~~~~rfa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~~ 1005 (1011)
|++.=|||+.+.++..||+-+.+.+. .+.++|++-.+-++=-|++.++.++.
T Consensus 53 ----g~E~I~A~~ll~~~~~~L~H~~~~~~-----~l~l~vrs~~~~l~d~ll~~~~~~~~ 104 (104)
T PF14807_consen 53 ----GNEGIFACQLLNSSPVCLLHCRVNAG-----TLDLWVRSSDSPLTDCLLYQCQKILQ 104 (104)
T ss_pred ----CccceeeeeccCCCCeEEEEEEecCC-----eEEEEEEcCCCCcHHHHHHHHHHHhC
Confidence 44667999999999999999987332 57899999999999999999988763
No 52
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.94 E-value=0.16 Score=48.12 Aligned_cols=66 Identities=26% Similarity=0.227 Sum_probs=54.8
Q ss_pred cchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh---hHHHHHHHHHHHhcCCChhHHHHH
Q 001803 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAA 70 (1011)
Q Consensus 5 RVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~---~~~~L~eil~~LL~D~dp~VvgsA 70 (1011)
++..-.+-++.+|-+|+.|.++=||-.|+.|+..+-+...++ ...++.+.|-+++.|.++.|-.+|
T Consensus 20 ~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 20 DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 355667788889999999999999999999999988775533 446677778899999999998776
No 53
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=93.89 E-value=1.8 Score=48.89 Aligned_cols=130 Identities=18% Similarity=0.247 Sum_probs=89.9
Q ss_pred HHHHHHH-HhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhh
Q 001803 313 SVFKEFQ-DYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (1011)
Q Consensus 313 ~IL~EL~-~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~ 391 (1011)
.+++.|. -.+++.|..++..+++++|.|+.-....+...+..++..++. +++.+-..++.+|.+|+..
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-----------~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-----------DDEEVKITALKALFDLLLT 94 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHH
Confidence 7777766 466788899999999999999999999999999999988852 3344555566677777776
Q ss_pred CCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcC
Q 001803 392 DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (1011)
Q Consensus 392 ~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p 471 (1011)
|... .++....+. + .. ....+++.+.+-+..+.++++..+...++||++...
T Consensus 95 ~g~~----------~~~~~~~~~----------~------~~--~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~ 146 (298)
T PF12719_consen 95 HGID----------IFDSESDND----------E------SV--DSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR 146 (298)
T ss_pred cCch----------hccchhccC----------c------cc--hHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 6521 122111111 1 11 134566777766677788899999999999999875
Q ss_pred CCC-hHHHHHH
Q 001803 472 GGD-MWTITRL 481 (1011)
Q Consensus 472 ~e~-~~~l~~L 481 (1011)
-.+ ...+..|
T Consensus 147 i~~~~~vL~~L 157 (298)
T PF12719_consen 147 ISDPPKVLSRL 157 (298)
T ss_pred CCcHHHHHHHH
Confidence 444 3344443
No 54
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=6.7 Score=47.51 Aligned_cols=240 Identities=18% Similarity=0.143 Sum_probs=157.6
Q ss_pred hhc-CCCChhhHHHHHHHHHHHhccChhh----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcc-----cchHHH
Q 001803 19 KCA-RDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNF-----TLIGRN 88 (1011)
Q Consensus 19 k~l-~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~-----dLihk~ 88 (1011)
+++ .+.+|-+|-.||-|+..+-.-..+. -...-..++-.||...+.-|.--|+-|+-.|..+.. -+-+..
T Consensus 116 ~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~ 195 (514)
T KOG0166|consen 116 EFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGA 195 (514)
T ss_pred HHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcc
Confidence 444 5888999999999999998876632 111233455679999999999999999999976642 233455
Q ss_pred HHHHHHhCCCCChhhHHHHHHH----HHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhh
Q 001803 89 YRNLCQILPDVEEWGQILLIEI----LLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV 164 (1011)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~l----L~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~ 164 (1011)
.-.|+.+|...+. +.+++- |...+|.+. |.
T Consensus 196 l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~----P~--------------------------------------- 229 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN----PS--------------------------------------- 229 (514)
T ss_pred hHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC----CC---------------------------------------
Confidence 6677777766665 223222 222222110 00
Q ss_pred hhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHHHHH
Q 001803 165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDVK 242 (1011)
Q Consensus 165 ~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~~l~ 242 (1011)
+ .+ .-+.-+|..+.-||+|..+-|.--|+-+.-|++ +.+.+.
T Consensus 230 -------------------------------P----~~-~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 230 -------------------------------P----PF-DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred -------------------------------C----cH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 0 00 114568888999999999999887777776765 444333
Q ss_pred -----HHHHHHHHHhcc-CCcchHHHHHHHHHHHHh---------CCccccccccceeeccCCcHHHHHHHHHHHHhhcC
Q 001803 243 -----RIVKPLLFILRS-SGASKYVVLCNIQVFAKA---------LPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVT 307 (1011)
Q Consensus 243 -----~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~---------~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lan 307 (1011)
.++.-|+.||.. ++.++--+|+.|--|+.- ..+ .-|++..++- .+....||+..-=+|.+++-
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~-~L~~l~~ll~-~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG-ALPVLSNLLS-SSPKESIKKEACWTISNITA 351 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC-hHHHHHHHhc-cCcchhHHHHHHHHHHHhhc
Confidence 245667888864 677888888877554432 111 2234433321 12334699999999999875
Q ss_pred CCCHH--------HHHHHHHHhhccCChhHHHHHHHHHHHHHhh
Q 001803 308 ESSIS--------SVFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (1011)
Q Consensus 308 e~Nv~--------~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k 343 (1011)
-|.. .++..|..-+...+.+.+++|.-||+.++..
T Consensus 352 -G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 352 -GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred -CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 4442 2566777777888899999999999987754
No 55
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=3.7 Score=50.08 Aligned_cols=111 Identities=22% Similarity=0.187 Sum_probs=83.1
Q ss_pred cchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhc-cChhhhHHHHHHHHHHHhcC--CChhHHHHHHHHHHHhCCCc
Q 001803 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLND--RSPGVVGAAAAAFASICPNN 81 (1011)
Q Consensus 5 RVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~-ldpe~~~~~L~eil~~LL~D--~dp~VvgsAv~Af~EIcP~r 81 (1011)
+-|-|+|+ ++.|-.|..|..++||.+|.+|+--+-+ +.+...+.-|...|..++.+ ++.+.+...+-++.++-|..
T Consensus 210 ~EPyiv~~-lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 210 FEPYIVPI-LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred CCchHHhh-HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 34555554 4577789999999999998888766554 44433555666667777777 77777777888888888888
Q ss_pred ccch-HHHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001803 82 FTLI-GRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 82 ~dLi-hk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1011)
+++. ...++.|-..|-|..+=-|-.-+..|++|+.
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 7653 4467888888888888888888888888874
No 56
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.52 E-value=6.1 Score=49.44 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcC---CChhHHHHHHHHHHHhCCCcccchHHH
Q 001803 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLND---RSPGVVGAAAAAFASICPNNFTLIGRN 88 (1011)
Q Consensus 12 iv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D---~dp~VvgsAv~Af~EIcP~r~dLihk~ 88 (1011)
-+.-||.|+.....++-||..-.||-++-.... +.+-++..|.+| +.+.+-++|+.++..|.+.. ++...
T Consensus 64 e~ff~~tKlfQskd~~LRr~vYl~Ikels~ise-----dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~--m~~~i 136 (865)
T KOG1078|consen 64 ELFFAITKLFQSKDVSLRRMVYLAIKELSKISE-----DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGT--MLQAI 136 (865)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhhccccch-----hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcc--hhHHH
Confidence 467799999999999999999999988755543 223334444444 66789999999999998775 33334
Q ss_pred HHHHHHhCCCCCh
Q 001803 89 YRNLCQILPDVEE 101 (1011)
Q Consensus 89 yrkLc~~L~d~dE 101 (1011)
=|++=..+++-..
T Consensus 137 ery~kqaivd~~~ 149 (865)
T KOG1078|consen 137 ERYMKQAIVDKNP 149 (865)
T ss_pred HHHHHhHeecccc
Confidence 4555556666444
No 57
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=93.19 E-value=0.28 Score=52.47 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=92.1
Q ss_pred HHHHHHhhhhhccCCChHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCcccc
Q 001803 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP------KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFV 278 (1011)
Q Consensus 206 l~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap------~~~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~lF~ 278 (1011)
++.++..+...+.+.+++|+-.|+.++-.++. ...+..++.+|+..+.+ ..-++--+-..|..|+...+ +.
T Consensus 51 l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~ 128 (228)
T PF12348_consen 51 LRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YS 128 (228)
T ss_dssp HH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H-
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cH
Confidence 44556678888899999999999887655432 23467778888888765 45678888888888888766 11
Q ss_pred ccc--cceeeccCC-cHHHHHHHHHHHHhhcCCCC-----------HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhC
Q 001803 279 PHY--EDFFVSSSD-SYQSKALKLEILSSIVTESS-----------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKL 344 (1011)
Q Consensus 279 ~~l--~~Ffv~~~D-p~~IK~lKLeIL~~Lane~N-----------v~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~ 344 (1011)
+.+ ..+....++ ...+|..-++.|..+...-+ +..+++-+...+.|.+.+++..+-+++..+...+
T Consensus 129 ~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 129 PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 121 111112233 35799999999999887666 3568888888999999999999999999999888
Q ss_pred cccHHHHH
Q 001803 345 PKMANTCV 352 (1011)
Q Consensus 345 p~~a~~cl 352 (1011)
|..+...+
T Consensus 209 ~~~a~~~~ 216 (228)
T PF12348_consen 209 PERAESIL 216 (228)
T ss_dssp -HHH----
T ss_pred CHhhccch
Confidence 88876655
No 58
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.02 E-value=14 Score=44.91 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=45.7
Q ss_pred hccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCc
Q 001803 216 LLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPH 275 (1011)
Q Consensus 216 LLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~ 275 (1011)
|+...|-.+-+=|+...+.-+..+.+.++++-+..++.. +.+.+.++.+.+..++...|.
T Consensus 348 LIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 348 LISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred HhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 445556555555566666777778899999888888764 678899999999999988774
No 59
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.92 E-value=39 Score=45.54 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=55.8
Q ss_pred CCcchHH-HHHHHHHHHHhCCcccc-ccccceee------ccCCcHHHHHHHHHHHHhhc----CCCCH--HHHHHHHHH
Q 001803 255 SGASKYV-VLCNIQVFAKALPHLFV-PHYEDFFV------SSSDSYQSKALKLEILSSIV----TESSI--SSVFKEFQD 320 (1011)
Q Consensus 255 ~~eiqYv-vL~~I~~i~~~~p~lF~-~~l~~Ffv------~~~Dp~~IK~lKLeIL~~La----ne~Nv--~~IL~EL~~ 320 (1011)
..+++++ .+..+..++..+|.+|. .|+...+. ........-..-+.||-... +.++. ..|=+-|..
T Consensus 1049 ~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~ 1128 (1692)
T KOG1020|consen 1049 ESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLK 1128 (1692)
T ss_pred cchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 3555554 46678889999999988 55544332 11112222233333433322 22111 111122444
Q ss_pred hhccCChhHHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHH
Q 001803 321 YIRDPDRRFAADTVAAIGLCARKLP---KMANTCVEGLLALIR 360 (1011)
Q Consensus 321 Yv~~~D~efv~~aI~AIG~~A~k~p---~~a~~cl~~LL~LLs 360 (1011)
-+.......+..+|-.+|.+|.|+- ..+..|+..+++.|.
T Consensus 1129 ~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1129 RIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLE 1171 (1692)
T ss_pred HHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 4444555667777788888887653 345566666666654
No 60
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=92.83 E-value=19 Score=45.14 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=59.9
Q ss_pred CccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc---Chhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 3 sIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l---dpe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
+.|+.--+|.+...|.+.++.++|-||-.||--|..+-.. ..++ ....+--+|..-|....|-|+|+.+-|+..|+
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 4688888888899999999999999999999887766554 3322 33445566777788889999999998888775
No 61
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.53 E-value=32 Score=42.05 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhhhccCchhHHHHhh-hhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCC
Q 001803 396 HEKVIIQLFRSLDSIKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGD 474 (1011)
Q Consensus 396 ~~~ii~~L~~~Ld~I~~p~ArAsIi-WLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~ 474 (1011)
+..++.-|.+++.+-. .++|.+++ |++-=|......+-....+++--+.+...+-+++|-++.|.+.+-+.......
T Consensus 334 ~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~- 411 (675)
T KOG0212|consen 334 YGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP- 411 (675)
T ss_pred hHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc-
Confidence 4566777777665432 34555555 99987754322222234566777788888999999999999999876543221
Q ss_pred hHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 001803 475 MWTITRLFSYLLELAECDLNYDVRDRARFFKK 506 (1011)
Q Consensus 475 ~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~ 506 (1011)
-..++++-+|++-+.| .-=++.|+-++-|
T Consensus 412 --~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 412 --NLRKFLLSLLEMFKED-TKLLEVRGNLIIR 440 (675)
T ss_pred --cHHHHHHHHHHHHhhh-hHHHHhhhhHHHH
Confidence 2346677777774443 4556777766544
No 62
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.02 E-value=7 Score=52.11 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHH----Hh---CCccccccccceeeccCCcH-HHHHHHHHHHHhhcCCC-CH-----HHHHHHHHHhhcc
Q 001803 259 KYVVLCNIQVFA----KA---LPHLFVPHYEDFFVSSSDSY-QSKALKLEILSSIVTES-SI-----SSVFKEFQDYIRD 324 (1011)
Q Consensus 259 qYvvL~~I~~i~----~~---~p~lF~~~l~~Ffv~~~Dp~-~IK~lKLeIL~~Lane~-Nv-----~~IL~EL~~Yv~~ 324 (1011)
+|-.|.++..+. .. .-++|..+++.||-...++. ..-.-=++|+..|.++. |+ ..|+..|..+-++
T Consensus 117 ~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~ 196 (1266)
T KOG1525|consen 117 YFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRD 196 (1266)
T ss_pred HHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCC
Confidence 445556665543 11 12577778888987665542 22233677877777654 44 3466666666655
Q ss_pred CChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHH
Q 001803 325 PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLF 404 (1011)
Q Consensus 325 ~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~ 404 (1011)
...+=..-|-.-|-+||.+........+. +.|..... ....+..-...+|..|-+-.|+.-..++.+|.
T Consensus 197 ~~~~a~~la~~li~~~a~~~~~~i~~f~~---~~~~~~~s--------~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~ 265 (1266)
T KOG1525|consen 197 TIKEADKLASDLIERCADNLEDTIANFLN---SCLTEYKS--------RQSSLKIKYHELILELWRIAPQLLLAVIPQLE 265 (1266)
T ss_pred ccHHHHHHHHHHHHHhhhhhchhHHHHHH---HHHhhccc--------cccchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55444445557788899888765544333 33322100 00111222333566777778888778888877
Q ss_pred HhhhccCchhHHHHhhh----hhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCC
Q 001803 405 RSLDSIKVPEARVMIIW----MVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (1011)
Q Consensus 405 ~~Ld~I~~p~ArAsIiW----LIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~ 472 (1011)
.-|-.-+ ...|-..+= +++++.+... .--++++..+.++|.+-+..||...+-.+.-.++.+|.
T Consensus 266 ~eL~se~-~~~Rl~a~~lvg~~~~~~~~~l~---~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 266 FELLSEQ-EEVRLKAVKLVGRMFSDKDSQLS---ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHhcch-HHHHHHHHHHHHHHHhcchhhhc---ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 6553322 223333344 4444543221 12367788888999999999999999999888888875
No 63
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=91.85 E-value=26 Score=45.13 Aligned_cols=241 Identities=17% Similarity=0.147 Sum_probs=143.4
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHH-HHHHHHhcCCChhHHHHHHHH---HHHhCCCcc----
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIE-EIVGILLNDRSPGVVGAAAAA---FASICPNNF---- 82 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~-eil~~LL~D~dp~VvgsAv~A---f~EIcP~r~---- 82 (1011)
+=++..|-|.+.|.++-|.--|+-|+.=+-..-++++.+.+. .+...++.++...-=.+++.. ..++-|.--
T Consensus 46 ~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la 125 (1233)
T KOG1824|consen 46 RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA 125 (1233)
T ss_pred hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccc
Confidence 345667788899999999999999988887777744443332 333334555444433444433 334445211
Q ss_pred -cchHHHHHHHHHhCCCCChhh--HHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCcc
Q 001803 83 -TLIGRNYRNLCQILPDVEEWG--QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTY 159 (1011)
Q Consensus 83 -dLihk~yrkLc~~L~d~dEWg--Qv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~ 159 (1011)
....+...+|...+...++.. ++..+++|..|-- + |
T Consensus 126 ~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls-r---------~------------------------------- 164 (1233)
T KOG1824|consen 126 ATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS-R---------F------------------------------- 164 (1233)
T ss_pred cHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH-h---------h-------------------------------
Confidence 112222333333333344443 6667777766641 1 0
Q ss_pred chhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC---
Q 001803 160 DSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--- 236 (1011)
Q Consensus 160 ~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--- 236 (1011)
...+-++|.-+|++..|.|++.-.||-=-++-++-|++
T Consensus 165 ---------------------------------------g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 165 ---------------------------------------GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred ---------------------------------------cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence 00133478889999999999999999877776665553
Q ss_pred CHHHHHHHHHHHHHHhccC--CcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHH
Q 001803 237 PKEDVKRIVKPLLFILRSS--GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSV 314 (1011)
Q Consensus 237 p~~~l~~i~~pLv~LL~s~--~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~I 314 (1011)
+...+..++.-|++=|..+ +..--.-.+.|..|+.....-|..|+...
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~i------------------------------ 255 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKI------------------------------ 255 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchh------------------------------
Confidence 4455666666666655432 22222334456666666676677665321
Q ss_pred HHHHHHhh---ccCChhHHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHh
Q 001803 315 FKEFQDYI---RDPDRRFAADTVAAIGLCARKLPKMA----NTCVEGLLALIRQ 361 (1011)
Q Consensus 315 L~EL~~Yv---~~~D~efv~~aI~AIG~~A~k~p~~a----~~cl~~LL~LLs~ 361 (1011)
+-=+..|. ...|++++...+++++..-.+-|... +.+++.+++-++.
T Consensus 256 vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisY 309 (1233)
T KOG1824|consen 256 VPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISY 309 (1233)
T ss_pred hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhcc
Confidence 22233455 56788899999999998888877543 4555666665553
No 64
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.80 E-value=1.2 Score=39.96 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=57.0
Q ss_pred HHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHH
Q 001803 400 IIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTIT 479 (1011)
Q Consensus 400 i~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~ 479 (1011)
|..|.+.+.+=.++..|..++|.+|++++ ++++..+.+-+.++...||.+.+.++.++- . .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--~--------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD---------PEAIPALIELLKDEDPMVRRAAARALGRIG--D--------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--H--------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C--------H
Confidence 34566777555678999999999998863 234444555557889999999999999873 1 1
Q ss_pred HHHHHHHHHHccCCChHHHhHHH
Q 001803 480 RLFSYLLELAECDLNYDVRDRAR 502 (1011)
Q Consensus 480 ~L~qyVL~La~~D~n~DVRDRAr 502 (1011)
...+.+.++...|.+..||.-|-
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHH
Confidence 23444455555666777776554
No 65
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=91.73 E-value=45 Score=42.02 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhcc-ChhhhHHHHHHHHHHHh---cCCChhHHHHHHHHHHHhCCCccc----
Q 001803 12 LVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILL---NDRSPGVVGAAAAAFASICPNNFT---- 83 (1011)
Q Consensus 12 iv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~L~eil~~LL---~D~dp~VvgsAv~Af~EIcP~r~d---- 83 (1011)
-++..|.+|+.|.+-.||--+|+|+.-++.. .| --.+++..+++-|- .-+---++++-+.|.--+||.--.
T Consensus 553 ~lv~ii~~gl~De~qkVR~itAlalsalaeaa~P-ygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~ 631 (1172)
T KOG0213|consen 553 PLVKIIEHGLKDEQQKVRTITALALSALAEAATP-YGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYAS 631 (1172)
T ss_pred HHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHH
Confidence 3567899999999999999999999999987 55 45556666554333 334456777778888899986411
Q ss_pred -chHHHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001803 84 -LIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 84 -Lihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1011)
........|.+-....||=-.-.+|.++.+.+-
T Consensus 632 yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~ 665 (1172)
T KOG0213|consen 632 YYTREVMLILIREFGSPDEEMKKIVLKVVKQCCA 665 (1172)
T ss_pred HhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhc
Confidence 111223445555556788788888999998884
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=91.51 E-value=24 Score=43.09 Aligned_cols=220 Identities=14% Similarity=0.150 Sum_probs=124.7
Q ss_pred CChHHHHHHHHHHH----hcCCHH---------HHHHHHHHHHH---HhccCCcchHHHHHHHHHHHHhCCccccccccc
Q 001803 220 HNSAVVLAAAGVHW----IMSPKE---------DVKRIVKPLLF---ILRSSGASKYVVLCNIQVFAKALPHLFVPHYED 283 (1011)
Q Consensus 220 ~NsAVVlaaa~l~~----~lap~~---------~l~~i~~pLv~---LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~ 283 (1011)
.++-++.+|...+. |+++.. ....+++.|+. +.-+..|.|-.....+-+|+...|+...+-+..
T Consensus 462 D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~ 541 (858)
T COG5215 462 DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAG 541 (858)
T ss_pred ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 34556666655443 444421 13445666653 223467888888888888888899988888877
Q ss_pred eeeccCCcHHHHHHHHHH----HH-hhcCCCCHHHHHHHHHH-hhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHH
Q 001803 284 FFVSSSDSYQSKALKLEI----LS-SIVTESSISSVFKEFQD-YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLA 357 (1011)
Q Consensus 284 Ffv~~~Dp~~IK~lKLeI----L~-~Lane~Nv~~IL~EL~~-Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~ 357 (1011)
||- +-..||+- +. .|++++-. .++||+. |+. +....|+.-+ .-+.++.+..+..+++
T Consensus 542 ~~~-------~~~~kl~~~isv~~q~l~~eD~~--~~~elqSN~~~-----vl~aiir~~~---~~ie~v~D~lm~Lf~r 604 (858)
T COG5215 542 FYD-------YTSKKLDECISVLGQILATEDQL--LVEELQSNYIG-----VLEAIIRTRR---RDIEDVEDQLMELFIR 604 (858)
T ss_pred HHH-------HHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHHHH-----HHHHHHHhcC---CCcccHHHHHHHHHHH
Confidence 762 33444442 22 13333322 3677665 333 2222222222 2345688889999999
Q ss_pred HHHhhhccccccCCCCCCcchhh-HHHHHHHHHhhCCcc----hHHHHHHHHHhhhccCchhHHHHhhhhhccccCCC-C
Q 001803 358 LIRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSC----HEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVG-V 431 (1011)
Q Consensus 358 LLs~~~~~~~~~~~~~~~~vV~E-~V~vIk~Llq~~P~~----~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~-e 431 (1011)
+|... +..++-+ ....|-.+...-.+. ..+.+..|.+.+ ..++.....+.+=++|..+... +
T Consensus 605 ~les~-----------~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvgdlantl~~ 672 (858)
T COG5215 605 ILEST-----------KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVGDLANTLGT 672 (858)
T ss_pred HHhcc-----------CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHHHHHHHhhh
Confidence 99741 2223332 223444443322222 235567777777 4455455556678888875422 2
Q ss_pred C-ccccHHHHHHHHHHhhccC--hHHHHHHHHHHHHHHhhh
Q 001803 432 K-IPRMLTTVLKYLAWCFKSE--AVETKLQILNTTIKVLLC 469 (1011)
Q Consensus 432 ~-ip~ia~dvLR~l~k~F~~E--~~~VKlqILta~aKL~~~ 469 (1011)
. .++ +.++...++.....+ ...+|-.||..+.-+.+.
T Consensus 673 df~~y-~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 673 DFNIY-ADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred hHHHH-HHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 2 233 566667777766655 357888999887776554
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=91.17 E-value=1.1 Score=41.94 Aligned_cols=101 Identities=9% Similarity=0.104 Sum_probs=66.2
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHH-----HHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHH
Q 001803 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN-----TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSI 388 (1011)
Q Consensus 314 IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~-----~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~L 388 (1011)
++..|..++.+.+.+.+..++.+++.++...|.... .++..++++|+. .+..+...++..+.+|
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----------~~~~v~~~a~~~L~~l 76 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-----------EDEEVVKAALWALRNL 76 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-----------CCHHHHHHHHHHHHHH
Confidence 455666677777788999999999999987655444 445677777662 2344666677788888
Q ss_pred HhhCCcchHH-----HHHHHHHhhhccCchhHHHHhhhhhccc
Q 001803 389 IKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMVGEY 426 (1011)
Q Consensus 389 lq~~P~~~~~-----ii~~L~~~Ld~I~~p~ArAsIiWLIGEY 426 (1011)
.+..+..... ++..|.+.++.- +...+...+|+++.-
T Consensus 77 ~~~~~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l 118 (120)
T cd00020 77 AAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNL 118 (120)
T ss_pred ccCcHHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHh
Confidence 8766543222 355555555543 345666667777653
No 68
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=89.69 E-value=26 Score=41.65 Aligned_cols=89 Identities=16% Similarity=-0.019 Sum_probs=68.4
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHH
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNL 92 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkL 92 (1011)
++.++.+++.|..+-||..||-|+.++.. +.....|..+|.|.+|.|-.+++.++....++ .+..|
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~-------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L 152 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG-------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPAL 152 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHH
Confidence 47889999999999999999999996532 23445566789999999998888666653322 45678
Q ss_pred HHhCCCCChhhHHHHHHHHHHhh
Q 001803 93 CQILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 93 c~~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
...|.+-+.--....++.|....
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhc
Confidence 88888888887777777776654
No 69
>PF14797 SEEEED: Serine-rich region of AP3B1, clathrin-adaptor complex
Probab=89.38 E-value=0.42 Score=46.39 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q 001803 600 EEWTGSSSNGTDDPD-TSGSLDEESGSN 626 (1011)
Q Consensus 600 ~~~~~s~s~~~~~~~-~s~~~~~~~~s~ 626 (1011)
.+.|||++|+++++. ++.+++++++++
T Consensus 3 ~~kFYsEsEEeedsSdSsSdSESeSgSE 30 (130)
T PF14797_consen 3 DKKFYSESEEEEDSSDSSSDSESESGSE 30 (130)
T ss_pred cccccccccccccccccccccccccccc
Confidence 456999999876543 233333344443
No 70
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.13 E-value=7.2 Score=52.02 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhhc--CCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhhhcccccc
Q 001803 293 QSKALKLEILSSIV--TESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP-KMANTCVEGLLALIRQELLTSDIE 369 (1011)
Q Consensus 293 ~IK~lKLeIL~~La--ne~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p-~~a~~cl~~LL~LLs~~~~~~~~~ 369 (1011)
.++..=-+|++.|. .+.-+..|+.+|..-+...+.+++.+|+.-+|++-.... ...+++-+++..+|..-
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~------- 309 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRF------- 309 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHh-------
Confidence 34444455555543 455566788899888888888999999999998754332 22234444555555420
Q ss_pred CCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCC-CccccHHHHHHHHHHhh
Q 001803 370 SGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV-KIPRMLTTVLKYLAWCF 448 (1011)
Q Consensus 370 ~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e-~ip~ia~dvLR~l~k~F 448 (1011)
.+....|-.++|-.+++++..+|.........++-...+. ++..|....-+++.-. ... .... .+++|..+.++-
T Consensus 310 -~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~-D~~~rir~~v~i~~~~-v~~~~l~~-~~~ll~~~~eR~ 385 (1266)
T KOG1525|consen 310 -NDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDL-DEDVRVRTQVVIVACD-VMKFKLVY-IPLLLKLVAERL 385 (1266)
T ss_pred -ccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC-ChhhhheeeEEEEEee-hhHhhhhh-hHHHHHHHHHHH
Confidence 1233456788888999999999987665555444333222 3444443344444321 001 1122 344788888888
Q ss_pred ccChHHHHHHHHHHHHHHhhh---cCCCC-------h---------------HHHHHHHHHHHHHHccCCChHHHhHHHH
Q 001803 449 KSEAVETKLQILNTTIKVLLC---AKGGD-------M---------------WTITRLFSYLLELAECDLNYDVRDRARF 503 (1011)
Q Consensus 449 ~~E~~~VKlqILta~aKL~~~---~p~e~-------~---------------~~l~~L~qyVL~La~~D~n~DVRDRAr~ 503 (1011)
.+-...||.+.++-++++|-+ ....+ . ...+.++.++|.......+.++++|-+-
T Consensus 386 rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~ 465 (1266)
T KOG1525|consen 386 RDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKH 465 (1266)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 888899999999999999985 11100 0 0123566777777778889999999998
Q ss_pred HHHHccC
Q 001803 504 FKKLFSH 510 (1011)
Q Consensus 504 y~~LL~~ 510 (1011)
++.+|..
T Consensus 466 l~~~l~~ 472 (1266)
T KOG1525|consen 466 LYQLLAG 472 (1266)
T ss_pred HHHHHhc
Confidence 8888865
No 71
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=88.10 E-value=6.5 Score=49.90 Aligned_cols=256 Identities=16% Similarity=0.114 Sum_probs=145.9
Q ss_pred hhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChh-hhHHHHHHHHHHHhcCCChhHHHHHHH--HHHHhCCCcccc
Q 001803 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE-EITSAIEEIVGILLNDRSPGVVGAAAA--AFASICPNNFTL 84 (1011)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe-~~~~~L~eil~~LL~D~dp~VvgsAv~--Af~EIcP~r~dL 84 (1011)
.+..-+++.++.++.|.++.||...|+-+.=+--+-|- ...+.+.+..-.+|+|-+|.|..+-+- ...+.+++...
T Consensus 394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g- 472 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIG- 472 (759)
T ss_pred cchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCccc-
Confidence 34444578999999999999999999988765444442 234556666667899999999999873 33344444322
Q ss_pred hHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhh
Q 001803 85 IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELV 164 (1011)
Q Consensus 85 ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~ 164 (1011)
+--.-..++..+.+..||..-.+-.-+..|.+.-. .. .+
T Consensus 473 ~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la------------~q----~~------------------------- 511 (759)
T KOG0211|consen 473 ISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA------------LQ----LG------------------------- 511 (759)
T ss_pred chhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH------------Hh----hh-------------------------
Confidence 11234567778888888886666666666654210 00 00
Q ss_pred hhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHH----HHHhcCCHHH
Q 001803 165 NLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAG----VHWIMSPKED 240 (1011)
Q Consensus 165 ~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~----l~~~lap~~~ 240 (1011)
.+ + +|+-..-++ ...|..+=.++-=+|++ +.+.++..-.
T Consensus 512 -------~~----~-----------------------~~~~~~~l~---~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~ 554 (759)
T KOG0211|consen 512 -------VE----F-----------------------FDEKLAELL---RTWLPDHVYSIREAAARNLPALVETFGSEWA 554 (759)
T ss_pred -------hH----H-----------------------hhHHHHHHH---HhhhhhhHHHHHHHHHHHhHHHHHHhCcchh
Confidence 00 0 000001111 11111111222222222 2233332222
Q ss_pred HHHHHHHHH-HHhccCCcchHHHHHHHHHHHHhCC-cccccccccee-eccCCcH-HHHHHHHHHHHhhc---CCCCHHH
Q 001803 241 VKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALP-HLFVPHYEDFF-VSSSDSY-QSKALKLEILSSIV---TESSISS 313 (1011)
Q Consensus 241 l~~i~~pLv-~LL~s~~eiqYvvL~~I~~i~~~~p-~lF~~~l~~Ff-v~~~Dp~-~IK~lKLeIL~~La---ne~Nv~~ 313 (1011)
...++.-++ ..+..+--.|...|..|..|+.... .++..++--++ -...||. -||...+..|+.+. ..+-.+.
T Consensus 555 ~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~ 634 (759)
T KOG0211|consen 555 RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDE 634 (759)
T ss_pred HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHH
Confidence 233333332 3333335578888999998887655 46666665444 3457774 78888877777655 3444444
Q ss_pred HHHHHHHhh-ccCChhHHHHHHHHHHHHHh
Q 001803 314 VFKEFQDYI-RDPDRRFAADTVAAIGLCAR 342 (1011)
Q Consensus 314 IL~EL~~Yv-~~~D~efv~~aI~AIG~~A~ 342 (1011)
-+..++..+ .+.|.+.+-.|+.|.|.++.
T Consensus 635 ~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 635 EVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 555555544 56777888888888887765
No 72
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=87.03 E-value=25 Score=46.22 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=64.0
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc--ChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC------
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL--RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN------ 80 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l--dpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~------ 80 (1011)
+++++..+|+..-.- ==|.+|+-+...+.. +.|.-.+.+.+++-.|+.|..+.|-+.|+.++.++.+.
T Consensus 423 ~vs~lts~IR~lk~~----~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~ 498 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTI----QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPP 498 (1431)
T ss_pred eHHHHHHHHHhhhcc----hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCc
Confidence 455555555443222 236777777666654 44346677889999999999999999999999998742
Q ss_pred -cccchHH-HHHHHHHhCCC-CChhhHHHHHHHHHHhh
Q 001803 81 -NFTLIGR-NYRNLCQILPD-VEEWGQILLIEILLRYV 115 (1011)
Q Consensus 81 -r~dLihk-~yrkLc~~L~d-~dEWgQv~iL~lL~rY~ 115 (1011)
+-.+... .|-+|-.++.| ..+--.+..-+-|...|
T Consensus 499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 2223222 24455555566 45544555444454444
No 73
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=86.34 E-value=0.75 Score=38.22 Aligned_cols=33 Identities=33% Similarity=0.215 Sum_probs=28.6
Q ss_pred hhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHH
Q 001803 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKL 39 (1011)
Q Consensus 7 p~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kl 39 (1011)
...++-++..+.+++.|.++.||.+|+.|+.+|
T Consensus 23 ~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 23 QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 346778888999999999999999999999754
No 74
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=86.29 E-value=97 Score=38.51 Aligned_cols=102 Identities=21% Similarity=0.118 Sum_probs=60.7
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc-ChhhhHHHHHHHHHHHhc---CCChhHHHHHHHHHHHhCC----Ccc
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLN---DRSPGVVGAAAAAFASICP----NNF 82 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~L~eil~~LL~---D~dp~VvgsAv~Af~EIcP----~r~ 82 (1011)
.-++.+|++|+.|.+-+||=-+|+|+.-++.+ .| --.+++.+++.-|-. -.---++.+-+.|.--|.| +-.
T Consensus 357 ~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~P-ygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa 435 (975)
T COG5181 357 GPLLKCISKLLKDRSRFVRIDTANALSYLAELVGP-YGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYA 435 (975)
T ss_pred hhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhh
Confidence 44688999999999999999999999999987 56 556677776654432 2223455555555533433 110
Q ss_pred -cchHHHHHHHHHhCCCCChhhHHHHHHHHHH
Q 001803 83 -TLIGRNYRNLCQILPDVEEWGQILLIEILLR 113 (1011)
Q Consensus 83 -dLihk~yrkLc~~L~d~dEWgQv~iL~lL~r 113 (1011)
-....|.+-+.+.+...||=+.-.++-++..
T Consensus 436 ~h~tre~m~iv~ref~spdeemkk~~l~v~~~ 467 (975)
T COG5181 436 CHDTREHMEIVFREFKSPDEEMKKDLLVVERI 467 (975)
T ss_pred hhhHHHHHHHHHHHhCCchhhcchhHHHHHHH
Confidence 0122333444444444455444444444433
No 75
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.23 E-value=3.7 Score=38.68 Aligned_cols=77 Identities=22% Similarity=0.103 Sum_probs=59.2
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhcc-C-hhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCcccchHHHHH
Q 001803 16 AVGKCARDPSVFVRKCAANALPKLHEL-R-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGRNYR 90 (1011)
Q Consensus 16 aIkk~l~D~SPYVRKtAA~AI~Kly~l-d-pe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc---P~r~dLihk~yr 90 (1011)
-+.+-+.|+-|-||--|..-+.|+..- + +....+.+..++...|.|.++.|--||+.+|..+| |++ .+.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------vl~ 80 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------VLP 80 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH------HHH
Confidence 345667899999999999999998875 4 42467788888889999999999999998888776 443 445
Q ss_pred HHHHhCCC
Q 001803 91 NLCQILPD 98 (1011)
Q Consensus 91 kLc~~L~d 98 (1011)
.||..-.+
T Consensus 81 ~L~~~y~~ 88 (92)
T PF10363_consen 81 ILLDEYAD 88 (92)
T ss_pred HHHHHHhC
Confidence 55554443
No 76
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.05 E-value=9 Score=46.45 Aligned_cols=197 Identities=14% Similarity=0.149 Sum_probs=123.2
Q ss_pred cCCChHHHHHHHHHHHhcCCH-HH-----H-HHHHHHHHHHhccC-CcchHHHHHHHHHHHHhCC---------cccccc
Q 001803 218 WSHNSAVVLAAAGVHWIMSPK-ED-----V-KRIVKPLLFILRSS-GASKYVVLCNIQVFAKALP---------HLFVPH 280 (1011)
Q Consensus 218 qS~NsAVVlaaa~l~~~lap~-~~-----l-~~i~~pLv~LL~s~-~eiqYvvL~~I~~i~~~~p---------~lF~~~ 280 (1011)
+..|+.+.++||-+..+++.- .+ + ..++..|+.||.++ .+++=-+.-.|.-|+-..| +++.|-
T Consensus 120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 567799999999998888741 11 1 23566678999874 5565555444444443333 334444
Q ss_pred ccceeeccCCcHHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHH---
Q 001803 281 YEDFFVSSSDSYQSKALKLEILSSIVTES-------SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANT--- 350 (1011)
Q Consensus 281 l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~-------Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~--- 350 (1011)
+..+. .+++..+.+-..=.|.+||-.. ++..||.=|..-+.+.|.++..+|.-||..++.--++...-
T Consensus 200 l~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~ 277 (514)
T KOG0166|consen 200 LRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVID 277 (514)
T ss_pred HHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 44333 2344567777778888998655 57888888888999999999999999999998766665443
Q ss_pred --HHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHH-----HHHHHHHhhhccCchhHHHHhhhhh
Q 001803 351 --CVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEK-----VIIQLFRSLDSIKVPEARVMIIWMV 423 (1011)
Q Consensus 351 --cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~-----ii~~L~~~Ld~I~~p~ArAsIiWLI 423 (1011)
++..|++||... +..++.-++..+-+|+.-+..+... .+..|..++..-.....|....|+|
T Consensus 278 ~gvv~~LV~lL~~~-----------~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 278 AGVVPRLVDLLGHS-----------SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred ccchHHHHHHHcCC-----------CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 355678887631 2224444544444444333332222 2344444444333344667779999
Q ss_pred cccc
Q 001803 424 GEYS 427 (1011)
Q Consensus 424 GEY~ 427 (1011)
+--+
T Consensus 347 SNIt 350 (514)
T KOG0166|consen 347 SNIT 350 (514)
T ss_pred HHhh
Confidence 9865
No 77
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=1e+02 Score=40.09 Aligned_cols=176 Identities=14% Similarity=0.174 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhC-Ccccccc---ccceee------ccCCcHHHHHHHHHHHHhhcC----CCCHHHHHHHH-HHhh--
Q 001803 260 YVVLCNIQVFAKAL-PHLFVPH---YEDFFV------SSSDSYQSKALKLEILSSIVT----ESSISSVFKEF-QDYI-- 322 (1011)
Q Consensus 260 YvvL~~I~~i~~~~-p~lF~~~---l~~Ffv------~~~Dp~~IK~lKLeIL~~Lan----e~Nv~~IL~EL-~~Yv-- 322 (1011)
-.++..+.+++.++ +..|.+. +-..|- ..+++.--|.=+|.++.+|+. .+-++..++-+ ..|+
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 35677788888888 6666653 333333 224455566667777777763 23334444432 2233
Q ss_pred --ccCChhHHHHHHHHHHHHH-hhCc--ccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchH
Q 001803 323 --RDPDRRFAADTVAAIGLCA-RKLP--KMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHE 397 (1011)
Q Consensus 323 --~~~D~efv~~aI~AIG~~A-~k~p--~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~ 397 (1011)
++.---++++|.--+++.+ ..++ ......++...+.|.. +.+-.|-.|+...|+-+|..++..++
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~----------d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN----------DNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc----------CCcCchhhHHHHHHHHHHhcchhhhh
Confidence 2222357888888888888 5554 4566666666666652 12224778999999999999887655
Q ss_pred HH---HHHHHHhhhc---cCchhHHHHhh-hhhccccCCCCCccccHHHHHHHHHHhh
Q 001803 398 KV---IIQLFRSLDS---IKVPEARVMII-WMVGEYSSVGVKIPRMLTTVLKYLAWCF 448 (1011)
Q Consensus 398 ~i---i~~L~~~Ld~---I~~p~ArAsIi-WLIGEY~~~~e~ip~ia~dvLR~l~k~F 448 (1011)
++ |..+++.|-+ ..+.+....++ =++++|++ +..| +|.++...++..|
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fse--ElsP-fA~eL~q~La~~F 594 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSE--ELSP-FAVELCQNLAETF 594 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--hhch-hHHHHHHHHHHHH
Confidence 43 3333332221 22334444444 68999986 3334 4777766666665
No 78
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.77 E-value=1.1e+02 Score=38.64 Aligned_cols=277 Identities=17% Similarity=0.128 Sum_probs=158.2
Q ss_pred hhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhc--CCChhHHHHHHHHHHHhCCCcccc
Q 001803 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN--DRSPGVVGAAAAAFASICPNNFTL 84 (1011)
Q Consensus 7 p~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~--D~dp~VvgsAv~Af~EIcP~r~dL 84 (1011)
.++.-.+..+||+-+...+|-----|.+||.-+=.. +..+.+..-|.+||- +....|--.|+.+|..+....-|+
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 466778899999999999999989999999977555 345666666778775 666788888888888887555555
Q ss_pred hHH--HHHHHHHhCCCCChhh----HHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCc
Q 001803 85 IGR--NYRNLCQILPDVEEWG----QILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRT 158 (1011)
Q Consensus 85 ihk--~yrkLc~~L~d~dEWg----Qv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~ 158 (1011)
+.+ -+.+++.+|.|-+ .| -+.+|+.|..|.+.. |..+..-. . ....++-...
T Consensus 183 ~~~~~W~~riv~LL~D~~-~gv~ta~~sLi~~lvk~~p~~---------yk~~~~~a---v----s~L~riv~~~----- 240 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLLDDQH-MGVVTAATSLIEALVKKNPES---------YKTCLPLA---V----SRLSRIVVVV----- 240 (938)
T ss_pred cChhhHHHHHHHHhCccc-cceeeehHHHHHHHHHcCCHH---------HhhhHHHH---H----HHHHHHHhhc-----
Confidence 543 4667777777765 55 345677777665422 11110000 0 0000000000
Q ss_pred cchhhhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH
Q 001803 159 YDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK 238 (1011)
Q Consensus 159 ~~~~~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~ 238 (1011)
++.. ..-.|+.. .+|=...-+.++.-++.++
T Consensus 241 -~t~~---qdYTyy~v---------------------------------------------P~PWL~vKl~rlLq~~p~~ 271 (938)
T KOG1077|consen 241 -GTSL---QDYTYYFV---------------------------------------------PAPWLQVKLLRLLQIYPTP 271 (938)
T ss_pred -ccch---hhceeecC---------------------------------------------CChHHHHHHHHHHHhCCCC
Confidence 0000 00000100 1222223334444444332
Q ss_pred ---HHHHHHHHHHHHHhcc-----------CCcchHHHHHH-HHHHHHh--CCccccccc---cceeeccCCcHHHHHHH
Q 001803 239 ---EDVKRIVKPLLFILRS-----------SGASKYVVLCN-IQVFAKA--LPHLFVPHY---EDFFVSSSDSYQSKALK 298 (1011)
Q Consensus 239 ---~~l~~i~~pLv~LL~s-----------~~eiqYvvL~~-I~~i~~~--~p~lF~~~l---~~Ffv~~~Dp~~IK~lK 298 (1011)
....++...|=++|+. +.|.+-.+|-- |..+... .|++...-. -.|. ...+ +-||-+.
T Consensus 272 ~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl-s~rE-~NiRYLa 349 (938)
T KOG1077|consen 272 EDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL-SHRE-TNIRYLA 349 (938)
T ss_pred CCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh-hccc-ccchhhh
Confidence 2244455555555542 12334444433 3333332 345655433 3332 2223 4599999
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHhh----c-cCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Q 001803 299 LEILSSIVTESSISSVFKEFQDYI----R-DPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQ 361 (1011)
Q Consensus 299 LeIL~~Lane~Nv~~IL~EL~~Yv----~-~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~ 361 (1011)
||=++.|++..-..+.++.=++-+ + +.|..++++++.-+--.+. -+.+..++..||+.|..
T Consensus 350 LEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~IV~elLqYL~t 415 (938)
T KOG1077|consen 350 LESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQIVAELLQYLET 415 (938)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHHHHHHHHHHHhh
Confidence 999999999877776666544433 2 5677899999877655443 36788999999998873
No 79
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=85.30 E-value=22 Score=36.60 Aligned_cols=151 Identities=17% Similarity=0.083 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcc
Q 001803 298 KLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADV 377 (1011)
Q Consensus 298 KLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~v 377 (1011)
|+.-+.+=.++.|++.++++|..+..+.+.+.....++.|-..|..-|..+..+...+-.+-... ...+
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~-----------~~~f 71 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRF-----------PSEF 71 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHC-----------HHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccc-----------hhhH
Confidence 44444444559999999999999887768889999999999999999977766655444332210 0011
Q ss_pred hhhHHHHHHHHHhhCCcchHHHHHHHHHhhhc--cCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhcc-----
Q 001803 378 LIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS--IKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS----- 450 (1011)
Q Consensus 378 V~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~--I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~----- 450 (1011)
....+..+..-++... .-...+. -..-.-+.+.+.++||-....-.-+.++-++++.+......
T Consensus 72 ~~~ll~~~~~~f~~~~---------~~~~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~ 142 (209)
T PF02854_consen 72 RSLLLNRCQEEFEERY---------SNEELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPP 142 (209)
T ss_dssp HHHHHHHHHHHHHHHT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHH
T ss_pred HHHHHHHHHHHHHHhh---------hhhhHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCC
Confidence 1111111111111111 0000000 11122344567888885432222234567788888877665
Q ss_pred ---ChHHHHHHHHHHHHHHhh
Q 001803 451 ---EAVETKLQILNTTIKVLL 468 (1011)
Q Consensus 451 ---E~~~VKlqILta~aKL~~ 468 (1011)
...+.=+.+|..+.+.+-
T Consensus 143 ~~~~~ie~~~~lL~~~G~~l~ 163 (209)
T PF02854_consen 143 PDEENIECLCTLLKTCGKKLE 163 (209)
T ss_dssp TCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHHh
Confidence 334455566666666665
No 80
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=84.74 E-value=5.7 Score=42.41 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCccccccccceee----ccCCc-HHHHHHHHHHHHhhcCCCC-HHHH-
Q 001803 243 RIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFV----SSSDS-YQSKALKLEILSSIVTESS-ISSV- 314 (1011)
Q Consensus 243 ~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv----~~~Dp-~~IK~lKLeIL~~Lane~N-v~~I- 314 (1011)
.+...++..+.+ ..-+.-.++..+..|+...+.-|.+|+..++. +..|+ ..|+...-+.|..++...+ ...+
T Consensus 53 ~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~ 132 (228)
T PF12348_consen 53 QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL 132 (228)
T ss_dssp ---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH
T ss_pred HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH
Confidence 333455555543 45567777888888888777779888765553 44665 6899999999999999888 4566
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHhhCc
Q 001803 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (1011)
Q Consensus 315 L~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p 345 (1011)
+.-+.....+-++..+..+...+..+..+.+
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 6677777788888899999999999988888
No 81
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=84.03 E-value=3.3 Score=39.77 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=55.2
Q ss_pred CCCeeEEEEecCCCCCCCCCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCc
Q 001803 739 GNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEIT 818 (1011)
Q Consensus 739 g~GL~v~Y~F~r~p~~~~~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~ 818 (1011)
-+||.|.|++.+ .-.+....|.++|.|.+..+|+++++.-- .|.++... +.+- .-.
T Consensus 8 ~~~l~I~~~~~~---~~~~~~~~i~~~f~N~s~~~it~f~~q~a----vpk~~~l~----------------l~~~-s~~ 63 (115)
T PF02883_consen 8 DNGLQIGFKSEK---SPNPNQGRIKLTFGNKSSQPITNFSFQAA----VPKSFKLQ----------------LQPP-SSS 63 (115)
T ss_dssp ETTEEEEEEEEE---CCETTEEEEEEEEEE-SSS-BEEEEEEEE----EBTTSEEE----------------EEES-S-S
T ss_pred CCCEEEEEEEEe---cCCCCEEEEEEEEEECCCCCcceEEEEEE----eccccEEE----------------EeCC-CCC
Confidence 468999999998 33478999999999999999999999742 23444322 1111 123
Q ss_pred ccCCCCeeEEEEEEecCC------CCccceEEEEEc
Q 001803 819 SLEPGQTMKRILEVRFHH------HLLPLKLALHCN 848 (1011)
Q Consensus 819 ~L~pg~s~~~~lgidF~~------~~~~~~~~l~~~ 848 (1011)
.|+||+.++-.|-|.=.. .....+|.|..+
T Consensus 64 ~i~p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~ 99 (115)
T PF02883_consen 64 TIPPGQQITQVIKVENSPFSEPTPKPLKPRLRVSYN 99 (115)
T ss_dssp SB-TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEE
T ss_pred eeCCCCeEEEEEEEEEeecccCCCCCcCeEEEEEEE
Confidence 688898888877776411 222566666553
No 82
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.03 E-value=23 Score=44.50 Aligned_cols=177 Identities=16% Similarity=0.257 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCccccccccceeeccCCc-HHHHHHHHHHHHhhcCCCCHHHHHH
Q 001803 239 EDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTESSISSVFK 316 (1011)
Q Consensus 239 ~~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp-~~IK~lKLeIL~~Lane~Nv~~IL~ 316 (1011)
.++..+.+.++..+.. +-+.+-++.-.+...+...|.+-.-....|.--..|+ .-||.+++..+..+.-+.=++.+.+
T Consensus 45 ~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~ 124 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCD 124 (734)
T ss_pred cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHH
Confidence 4566666666666543 3455544444445555666754444444444444555 5799999999999988888889999
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCc
Q 001803 317 EFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPS 394 (1011)
Q Consensus 317 EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~--~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~ 394 (1011)
.|...+++.+...++.+...++.+-..-+. .....++.|-+++. +.+..||+-|+..+..|...+|+
T Consensus 125 Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~-----------D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 125 PLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS-----------DSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc-----------CCCchHHHHHHHHHHHHHHhCCC
Confidence 999999988876666655555444333222 12234555555554 23456888899999999988874
Q ss_pred -----chHHHHHHHHHhhhccCchhHHHHhhhhhcccc
Q 001803 395 -----CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS 427 (1011)
Q Consensus 395 -----~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~ 427 (1011)
....++.++...+..+++ -+++.|+=.+-+|-
T Consensus 194 ~~~~~l~~~~~~~lL~al~ec~E-W~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 194 VNLLELNPQLINKLLEALNECTE-WGQIFILDCLAEYV 230 (734)
T ss_pred CCcccccHHHHHHHHHHHHHhhh-hhHHHHHHHHHhcC
Confidence 234556666666665543 35566666667775
No 83
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=48 Score=38.46 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhhc-CCCCHHHHHH-----HHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHH-----HHHHHHHHHhh
Q 001803 294 SKALKLEILSSIV-TESSISSVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC-----VEGLLALIRQE 362 (1011)
Q Consensus 294 IK~lKLeIL~~La-ne~Nv~~IL~-----EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~c-----l~~LL~LLs~~ 362 (1011)
=|.-.|+-|-.++ +=+|+..++. =+..|+.+.+..+++.|.+-||.|+++-|.+-..+ +..|+..++.
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~- 177 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS- 177 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc-
Confidence 4555555555555 2355555443 34459999999999999999999999999876655 4456666553
Q ss_pred hccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHH-----HHHHHHhhhcc-CchhHHHHhhhhhccccCCC--CCcc
Q 001803 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKV-----IIQLFRSLDSI-KVPEARVMIIWMVGEYSSVG--VKIP 434 (1011)
Q Consensus 363 ~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~i-----i~~L~~~Ld~I-~~p~ArAsIiWLIGEY~~~~--e~ip 434 (1011)
+....+-..+.-.|..+||+++..+... ..-|.+.+..- ++...++.++++++-+-... +..
T Consensus 178 ---------~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d- 247 (342)
T KOG2160|consen 178 ---------DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED- 247 (342)
T ss_pred ---------CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-
Confidence 2233455677888999999998754433 22344445443 46788888899998764310 100
Q ss_pred ccHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHhhhcC
Q 001803 435 RMLTTVLKYLAWCFK-SEAVETKLQILNTTIKVLLCAK 471 (1011)
Q Consensus 435 ~ia~dvLR~l~k~F~-~E~~~VKlqILta~aKL~~~~p 471 (1011)
...+..+.+.+.++. .....++...+++..++....+
T Consensus 248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 011222333333443 3455667677776666554443
No 84
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.30 E-value=3.5 Score=50.79 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=57.0
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChh--hhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQE--EITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 10 ~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe--~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
+.-++.-+-.-+.|.+||+|-+|.+.+.|+|++... ..+-.+++.+...|.|++..|-.+|+-.+..+.
T Consensus 344 ~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 344 LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 445566677888999999999999999999998542 355668888888999999999999998887764
No 85
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=81.85 E-value=98 Score=35.04 Aligned_cols=92 Identities=26% Similarity=0.222 Sum_probs=68.5
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHH
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yr 90 (1011)
+.....+.+.+.|.++.||..|+..+..+ ......+.+..+|.|.++.|-..|+.++-++-... .+.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------a~~ 108 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------AVP 108 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh------HHH
Confidence 45677888999999999999999884421 12344556678899999999999999999886433 344
Q ss_pred HHHHhCC-CCChhhHHHHHHHHHHhh
Q 001803 91 NLCQILP-DVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 91 kLc~~L~-d~dEWgQv~iL~lL~rY~ 115 (1011)
.|...|. +.+.|-.......|.+..
T Consensus 109 ~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 109 PLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 5555555 688888888888877654
No 86
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=81.69 E-value=2.1 Score=38.50 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=34.5
Q ss_pred eEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEecCCCC
Q 001803 759 LVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHL 838 (1011)
Q Consensus 759 mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgidF~~~~ 838 (1011)
=+.+.++++|.++.++.++.+.-. +|+|-..... -..+..|+||++++..+-|.=-...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~----~P~GW~~~~~-----------------~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLS----LPEGWTVSAS-----------------PASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE------TTSE---E-----------------EEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEe----CCCCccccCC-----------------ccccccCCCCCEEEEEEEEECCCCC
Confidence 367899999999999999999753 6888531100 1255699999999988877655544
Q ss_pred cc
Q 001803 839 LP 840 (1011)
Q Consensus 839 ~~ 840 (1011)
.+
T Consensus 65 ~~ 66 (78)
T PF10633_consen 65 AP 66 (78)
T ss_dssp -S
T ss_pred CC
Confidence 43
No 87
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.05 E-value=1.1e+02 Score=34.64 Aligned_cols=129 Identities=17% Similarity=0.101 Sum_probs=76.4
Q ss_pred HHHHh-hhhhccCCChHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHhCC-cccccccc
Q 001803 208 LLLQC-TSPLLWSHNSAVVLAAAGVHWIM--SPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP-HLFVPHYE 282 (1011)
Q Consensus 208 lLL~~-~~pLLqS~NsAVVlaaa~l~~~l--ap~~~l~~i~~pLv~LL~-s~~eiqYvvL~~I~~i~~~~p-~lF~~~l~ 282 (1011)
-+++. +.|.++|.+++|=..+.+++-.+ -.++.......-+...+. .+.+++-++|+.|--|+..++ ..|...-.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 44544 45888888888776666664222 122222222223333343 357788888888887777665 23322211
Q ss_pred ceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccH-HHHHHHHHHH
Q 001803 283 DFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA-NTCVEGLLAL 358 (1011)
Q Consensus 283 ~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a-~~cl~~LL~L 358 (1011)
+. .......+++=|..|+.+.+.++...++.+++++-..---.. ..++..|+-+
T Consensus 106 --------~~--------------~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~ 160 (298)
T PF12719_consen 106 --------ND--------------ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLL 160 (298)
T ss_pred --------cC--------------ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 11 344556677778888888888899999999998654332222 4566666544
No 88
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=79.22 E-value=1.7e+02 Score=36.25 Aligned_cols=394 Identities=16% Similarity=0.102 Sum_probs=204.7
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC---Cccc-chHHH
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NNFT-LIGRN 88 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP---~r~d-Lihk~ 88 (1011)
+...+-.+ .|+++-||++-+-|....+...-..+-..|.++-+.-|+-..-.-+-+++..++-... ...| .+|+.
T Consensus 19 ~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~ 97 (569)
T KOG1242|consen 19 LLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI 97 (569)
T ss_pred ceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence 33344455 9999999999888888887775535667788877777763333333444444443321 2233 47889
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhc
Q 001803 89 YRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVS 168 (1011)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~ 168 (1011)
.-+|.+.+....+--|-.....|.-|.....+ ++.
T Consensus 98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~--~~~------------------------------------------- 132 (569)
T KOG1242|consen 98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG--LSG------------------------------------------- 132 (569)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc--cCH-------------------------------------------
Confidence 99999999999999999999888877632100 000
Q ss_pred cccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCH---HHH--HH
Q 001803 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPK---EDV--KR 243 (1011)
Q Consensus 169 ~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~---~~l--~~ 243 (1011)
..++..+..++.+.-.+=-..++.-.+.+-.. ..+ ..
T Consensus 133 --------------------------------------~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~ 174 (569)
T KOG1242|consen 133 --------------------------------------EYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFG 174 (569)
T ss_pred --------------------------------------HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhh
Confidence 00111111122222222222222222221110 000 11
Q ss_pred HHHHHHHHhcc--CCcchHHHHHHHHHHHHhCCccccccccceee----ccCCc-HHHHHHHHHHHHhhc---CCCCHHH
Q 001803 244 IVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYEDFFV----SSSDS-YQSKALKLEILSSIV---TESSISS 313 (1011)
Q Consensus 244 i~~pLv~LL~s--~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv----~~~Dp-~~IK~lKLeIL~~La---ne~Nv~~ 313 (1011)
+...|-..+.. +...+-.++-+.......-...|+||+..++. +..|. ..+|...-+-...+. +.--++.
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ 254 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL 254 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH
Confidence 22333333332 11122244444444444445678888765542 34554 567776666555554 4555666
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchh---hHHHHHHHHHh
Q 001803 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLI---QSIISIKSIIK 390 (1011)
Q Consensus 314 IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~---E~V~vIk~Llq 390 (1011)
++.-+..-+.+..=.-+..+++.+|.++.--|.....|+.-++.-++.- +. |....|-. +++..++.++
T Consensus 255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsev-l~------DT~~evr~a~~~~l~~~~svi- 326 (569)
T KOG1242|consen 255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEV-LW------DTKPEVRKAGIETLLKFGSVI- 326 (569)
T ss_pred hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHH-Hc------cCCHHHHHHHHHHHHHHHHhh-
Confidence 6665444333322245667889999888888999999999998888742 11 11222222 2333344333
Q ss_pred hCCcchHHHHHHHHHhhhccCchhHHH-Hhhhhhc--cccCCCC--CccccHHHHHHHHHHhhccChHHHHHHHHHHHHH
Q 001803 391 QDPSCHEKVIIQLFRSLDSIKVPEARV-MIIWMVG--EYSSVGV--KIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIK 465 (1011)
Q Consensus 391 ~~P~~~~~ii~~L~~~Ld~I~~p~ArA-sIiWLIG--EY~~~~e--~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aK 465 (1011)
.||+ ...++..|.++ +.+|..+. ..+-.+| +|.+..+ .+.-++|.+-|-+.++=+.- .---.+|.--++|
T Consensus 327 dN~d-I~~~ip~Lld~---l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~-kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 327 DNPD-IQKIIPTLLDA---LADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSI-KRKTAIIIDNMCK 401 (569)
T ss_pred ccHH-HHHHHHHHHHH---hcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchh-hhhHHHHHHHHHH
Confidence 3554 33445555544 44554221 1122233 3443222 11224566666555432211 1122356667777
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 001803 466 VLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFK 505 (1011)
Q Consensus 466 L~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~ 505 (1011)
++ ..|......+..|+-. |+.+.+|..|++|-=|..-+
T Consensus 402 Lv-eDp~~lapfl~~Llp~-lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 402 LV-EDPKDLAPFLPSLLPG-LKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred hh-cCHHHHhhhHHHHhhH-HHHHhcCCChhHHHHHHHHH
Confidence 75 2333222234455543 35556788899987654433
No 89
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=78.48 E-value=10 Score=35.94 Aligned_cols=73 Identities=19% Similarity=0.330 Sum_probs=57.3
Q ss_pred cHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHcc
Q 001803 436 MLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFS 509 (1011)
Q Consensus 436 ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~ 509 (1011)
..+.++.-+.+.|.+++..||.....++..+.-...++....+..+|..+..+ ..|.|.+||.=|.++-+||.
T Consensus 24 ~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 24 YLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-SADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhc
Confidence 35666676777999999999999888888776655554444567788887776 46899999999999999885
No 90
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=78.13 E-value=29 Score=35.88 Aligned_cols=125 Identities=15% Similarity=0.298 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhC-Cccccccccceee------ccCCcHHHHHHHHHHHHhhcCCC
Q 001803 238 KEDVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKAL-PHLFVPHYEDFFV------SSSDSYQSKALKLEILSSIVTES 309 (1011)
Q Consensus 238 ~~~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~-p~lF~~~l~~Ffv------~~~Dp~~IK~lKLeIL~~Lane~ 309 (1011)
...+.+.+.-+..||++ ++..|+.++.-+..++... ++.|..|+..++- ...||..++...+..|..|.
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~--- 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF--- 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Confidence 45667777778888876 5788999999999888887 7888777655441 23666677777777776653
Q ss_pred CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHH
Q 001803 310 SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSII 389 (1011)
Q Consensus 310 Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Ll 389 (1011)
.|++. .+++.++.. . +.....+..++.+++. ..+...++..+..++
T Consensus 97 ----------~~~~~-~p~l~Rei~------t----p~l~~~i~~ll~l~~~-------------~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 97 ----------DLIRG-KPTLTREIA------T----PNLPKFIQSLLQLLQD-------------SSCPETALDALATLL 142 (165)
T ss_pred ----------HHhcC-CCchHHHHh------h----ccHHHHHHHHHHHHhc-------------cccHHHHHHHHHHHH
Confidence 33332 223433321 1 1223445667776651 234566777899999
Q ss_pred hhCCcchHHH
Q 001803 390 KQDPSCHEKV 399 (1011)
Q Consensus 390 q~~P~~~~~i 399 (1011)
+.||......
T Consensus 143 ~~~ptt~rp~ 152 (165)
T PF08167_consen 143 PHHPTTFRPF 152 (165)
T ss_pred HHCCccccch
Confidence 9999864433
No 91
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=77.97 E-value=87 Score=40.22 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=62.2
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC---CcccchHHH
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP---NNFTLIGRN 88 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP---~r~dLihk~ 88 (1011)
...-.+....|..|-||+++|-=+.++-+.-+.+ ....+......|++|..-.|.-+|+-++..+.+ ...+..|.-
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~ 317 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSL 317 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhh
Confidence 3445678889999999999998888877765532 556677777888988887888888887776642 222445544
Q ss_pred HHHHHHhCCCCChhhHH
Q 001803 89 YRNLCQILPDVEEWGQI 105 (1011)
Q Consensus 89 yrkLc~~L~d~dEWgQv 105 (1011)
...+++...| -.|-+.
T Consensus 318 ~~~l~~~~~d-~~~~v~ 333 (759)
T KOG0211|consen 318 TESLVQAVED-GSWRVS 333 (759)
T ss_pred hHHHHHHhcC-hhHHHH
Confidence 4445444443 334443
No 92
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=77.96 E-value=27 Score=42.34 Aligned_cols=115 Identities=17% Similarity=0.259 Sum_probs=66.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHH---------hhcc------CChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Q 001803 297 LKLEILSSIVTESSISSVFKEFQD---------YIRD------PDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQ 361 (1011)
Q Consensus 297 lKLeIL~~Lane~Nv~~IL~EL~~---------Yv~~------~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~ 361 (1011)
+++.=|.+=+|.+|+..|++||.. |+++ ..+-|...-..-++.+-.+||.+....+.-|+-.+..
T Consensus 166 ksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r 245 (739)
T KOG2140|consen 166 KSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQAQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKR 245 (739)
T ss_pred HHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence 344556666889999999999765 2222 1122333233445567779999999888877765554
Q ss_pred hhccccccCCCCCCcchhh-HHHHHHHHHhhCCcchHHHHHHHHH-hhhccCchhHHHHhh
Q 001803 362 ELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSCHEKVIIQLFR-SLDSIKVPEARVMII 420 (1011)
Q Consensus 362 ~~~~~~~~~~~~~~~vV~E-~V~vIk~Llq~~P~~~~~ii~~L~~-~Ld~I~~p~ArAsIi 420 (1011)
.| +++++++.= ++..|..|+ ++.-.|+-++..++- +|+.-++.....+|.
T Consensus 246 ~f--------~RnDk~~c~~~~kfiahLi-nq~VahEIv~Leil~lLLe~PTddSvevaI~ 297 (739)
T KOG2140|consen 246 SF--------RRNDKVSCLNASKFIAHLI-NQQVAHEIVALEILTLLLERPTDDSVEVAIA 297 (739)
T ss_pred Hh--------cccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 32 344443322 223344443 445557666555544 556666666666544
No 93
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=77.60 E-value=40 Score=44.19 Aligned_cols=250 Identities=16% Similarity=0.147 Sum_probs=131.5
Q ss_pred CChhHHHHHHhhh--------hhc-cCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccC---CcchHHHHHHHHHH
Q 001803 202 TNDDVKLLLQCTS--------PLL-WSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILRSS---GASKYVVLCNIQVF 269 (1011)
Q Consensus 202 ~D~Dl~lLL~~~~--------pLL-qS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~LL~s~---~eiqYvvL~~I~~i 269 (1011)
+|||..+|-+... ..| +-++----|+|++.+-.+... ....+|.+.|.+. --||+-+...+.+.
T Consensus 628 iDpd~e~i~~i~i~QPd~Mw~~QLr~drDVvAQ~EAI~~le~~p~~----~s~~~L~rtl~der~FyrIR~~Aa~aLak~ 703 (1180)
T KOG1932|consen 628 IDPDMEWIREIHIEQPDFMWVYQLRQDRDVVAQMEAIESLEALPST----ASRSALTRTLEDERYFYRIRIAAAFALAKT 703 (1180)
T ss_pred eCcchhhhhhhhccCchHHHHHHHHhcccHHHHHHHHHHHHcCCcc----hhHHHHHHHHhhcchhhHHHHHHHHHHHHh
Confidence 4888776655442 223 445544455555443222111 1125666655442 46888888888887
Q ss_pred HHhCCccc-cccccc----eeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHH-HHHHHHHhh
Q 001803 270 AKALPHLF-VPHYED----FFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTV-AAIGLCARK 343 (1011)
Q Consensus 270 ~~~~p~lF-~~~l~~----Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI-~AIG~~A~k 343 (1011)
+...++.- -+|+.. +||..+-+ +.-.+|+.. ++.| |+..++ .|++.+-.+
T Consensus 704 a~~~~dwtG~~~Li~~F~~~fc~k~st-------------IpKsNnF~~----~q~Y-------fvq~~iP~a~a~lR~~ 759 (1180)
T KOG1932|consen 704 ANGESDWTGPPHLIQFFRKKFCSKDST-------------IPKSNNFSN----FQEY-------FVQCAIPVAFASLRGR 759 (1180)
T ss_pred hcccccccChHHHHHHHHHHhccccCC-------------CCCcCcccc----HHHH-------HHHHhhHHHHHHhccc
Confidence 65433221 123333 33332222 244666665 6777 888887 889888888
Q ss_pred CcccHHHHHHHHHHHHHhhhccccc--cCCCCCCcchhhHHHHHHHHHh------hC-----Ccc----hHHHHHHHHHh
Q 001803 344 LPKMANTCVEGLLALIRQELLTSDI--ESGNGEADVLIQSIISIKSIIK------QD-----PSC----HEKVIIQLFRS 406 (1011)
Q Consensus 344 ~p~~a~~cl~~LL~LLs~~~~~~~~--~~~~~~~~vV~E~V~vIk~Llq------~~-----P~~----~~~ii~~L~~~ 406 (1011)
-.....-+..+||+||..+ .|. .| +|.++++.-|..|-..+- .+ +.. ...++....+.
T Consensus 760 ~g~cp~~V~~FlLdLlkyN---DNs~N~Y--SD~~y~a~LIesl~~~l~p~~s~~~~~~k~~~~~l~~~~~~~~~ei~r~ 834 (1180)
T KOG1932|consen 760 EGKCPKEVKAFLLDLLKYN---DNSFNSY--SDDYYRASLIESLVESLFPMVSLEFYAEKHTDRLLSRDVRVLIDEITRL 834 (1180)
T ss_pred cCCChHHHHHHHHHHhhcc---cCCCCcc--chHHHHHHHHHHHhhhcccccchhhhhhhhcchhhhhHHHHHHHHHHHH
Confidence 8888899999999999853 111 12 234455443333333221 01 111 11122222222
Q ss_pred hh--cc--------CchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChH--HHHHHHHHHHHHHhhhcCCCC
Q 001803 407 LD--SI--------KVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAV--ETKLQILNTTIKVLLCAKGGD 474 (1011)
Q Consensus 407 Ld--~I--------~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~--~VKlqILta~aKL~~~~p~e~ 474 (1011)
|. .+ +.... ..+-.+|..+++ |. .|. ..++|+.|.. .+++.++++.+-+--..
T Consensus 835 L~~e~l~pS~k~ii~~~~l--~~~~~l~k~~hl----~s-~p~----~~~~~a~~~~~vd~r~~a~~~~v~~~~~~---- 899 (1180)
T KOG1932|consen 835 LNMEKLMPSFKHIIKVSAL--KAIRELQKSGHL----PS-LPE----LLESYAEEGSFVDVRICAEELNVDLGGVD---- 899 (1180)
T ss_pred HHHHhhchhhhceEEeeec--hhhhhhhhcccc----cc-Cch----hhhccccccchhhhHHHhhhhhhhhcccC----
Confidence 21 11 11111 124455555542 32 222 3457777763 46666666655433211
Q ss_pred hHHHHHHHHHHHHHHccCCChHHHhHH
Q 001803 475 MWTITRLFSYLLELAECDLNYDVRDRA 501 (1011)
Q Consensus 475 ~~~l~~L~qyVL~La~~D~n~DVRDRA 501 (1011)
.....+.|++++..+|.++=+|.+-
T Consensus 900 --~~~~~l~~~leil~~~~dp~~R~~i 924 (1180)
T KOG1932|consen 900 --GSPDDLAYILEILENDPDPVIRHKI 924 (1180)
T ss_pred --CChHHHHHHhhhcccCcchHHHHHH
Confidence 1234678899999999999988764
No 94
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=77.46 E-value=2e+02 Score=36.00 Aligned_cols=75 Identities=23% Similarity=0.194 Sum_probs=53.6
Q ss_pred ccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhc---cChhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHE---LRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 4 IRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~---ldpe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
+|-.--.+.++..|-+.++++.|.||-.||--+..+-. -+-+. ....+-.+|..-|....|-|+|+.+.|++.|.
T Consensus 596 ~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 596 FRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred hccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 44444456677788899999999999999876554443 33322 33446666777788889999999888877664
No 95
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.40 E-value=2.1e+02 Score=36.15 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhh
Q 001803 47 ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 47 ~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
+.+.+..-+..+..|.|+.|-.+|+-++..+-. .+.|-.-.|.+.|..|.|-+|=-....++++.-|+
T Consensus 195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g 262 (823)
T KOG2259|consen 195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG 262 (823)
T ss_pred cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc-cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 445566656678899999999999999888864 66666668999999999988888888899998887
No 96
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=77.38 E-value=77 Score=34.66 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred hccCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCccccccccceeec-----
Q 001803 216 LLWSHNSAVVLAAAGVHWIMSPKE--DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVS----- 287 (1011)
Q Consensus 216 LLqS~NsAVVlaaa~l~~~lap~~--~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~----- 287 (1011)
+-+..++.++....++...++... ....+.+.|..|... ..+.+|+.++-+..+-..++..| ++++.|...
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRI 87 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhc
Confidence 556778888888888887776433 344566666677664 45678999999999999999877 666644333
Q ss_pred ----cCCcH------HHHHHHHHHHHhhcCCCCHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHH
Q 001803 288 ----SSDSY------QSKALKLEILSSIVTESSISSVFKEFQDYI-RDPDRRFAADTVAAIGLCA 341 (1011)
Q Consensus 288 ----~~Dp~------~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv-~~~D~efv~~aI~AIG~~A 341 (1011)
.++.. .++.---+|.. ..++....++..+..++ .+.+...+.-++++|..+.
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~--~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICC--SRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11111 11111112222 13457778888888888 5666667777788887766
No 97
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=77.32 E-value=2.2 Score=34.26 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHH
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANA 35 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~A 35 (1011)
+.|..+|.+.+.|.+|-||++|.-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 5788999999999999999998754
No 98
>COG1470 Predicted membrane protein [Function unknown]
Probab=77.09 E-value=6.2 Score=46.87 Aligned_cols=63 Identities=16% Similarity=0.178 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEecCCCCcc
Q 001803 761 CLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFHHHLLP 840 (1011)
Q Consensus 761 ~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgidF~~~~~~ 840 (1011)
.+.+.++|.++.+++||.|.=+ .|.|.+ . .+.++ .|++|+||++-++.+-|.-...+-+
T Consensus 400 ~i~i~I~NsGna~LtdIkl~v~----~PqgWe-----------i-----~Vd~~-~I~sL~pge~~tV~ltI~vP~~a~a 458 (513)
T COG1470 400 TIRISIENSGNAPLTDIKLTVN----GPQGWE-----------I-----EVDES-TIPSLEPGESKTVSLTITVPEDAGA 458 (513)
T ss_pred eEEEEEEecCCCccceeeEEec----CCccce-----------E-----EECcc-cccccCCCCcceEEEEEEcCCCCCC
Confidence 4788889999999999999865 577753 1 25555 8999999999999999998887766
Q ss_pred ceEE
Q 001803 841 LKLA 844 (1011)
Q Consensus 841 ~~~~ 844 (1011)
=.-.
T Consensus 459 GdY~ 462 (513)
T COG1470 459 GDYR 462 (513)
T ss_pred CcEE
Confidence 4433
No 99
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=75.61 E-value=23 Score=33.33 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=24.7
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHhhCc---ccHHHHHHHHHHHHH
Q 001803 314 VFKEFQDYIRDPDRRFAADTVAAIGLCARKLP---KMANTCVEGLLALIR 360 (1011)
Q Consensus 314 IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p---~~a~~cl~~LL~LLs 360 (1011)
.+++...++.|+..-++..++..++++..+-. ...+.++..++..|+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~ 53 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLK 53 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcC
Confidence 34555555566665666666666666655544 223344444444443
No 100
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=75.30 E-value=80 Score=37.58 Aligned_cols=125 Identities=17% Similarity=0.213 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHhhCC----cchHHHHHHHHHhhhccC-chhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccC
Q 001803 377 VLIQSIISIKSIIKQDP----SCHEKVIIQLFRSLDSIK-VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE 451 (1011)
Q Consensus 377 vV~E~V~vIk~Llq~~P----~~~~~ii~~L~~~Ld~I~-~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E 451 (1011)
-|.|.+..+..|+...+ +.|...+.+..--|.... .+.-...+..++-.|.. +-|..+..+++.+.+.+..-
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~---kdp~l~~~~i~~llk~WP~t 267 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE---KDPSLAEPVIKGLLKHWPKT 267 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH---H-GGGHHHHHHHHHHHS-SS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHhCCCC
Confidence 47888888888887643 223333333222222222 12233445566666663 45778999999999999988
Q ss_pred hHHHHHHHHHHHHHHhhhcCCCC-hHHHHHHHHHHHHHHccCCChHHHhHHHHHH
Q 001803 452 AVETKLQILNTTIKVLLCAKGGD-MWTITRLFSYLLELAECDLNYDVRDRARFFK 505 (1011)
Q Consensus 452 ~~~VKlqILta~aKL~~~~p~e~-~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~ 505 (1011)
...-....|+-+..++-..+.+. ......+|+. +..|-.+.++.|-.||.++|
T Consensus 268 ~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~-la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 268 NSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKR-LAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp -HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHTSSSHHHHHHHHGGG
T ss_pred CchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHH
Confidence 88888888888888877665332 2234456654 45566788999999999887
No 101
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=72.72 E-value=28 Score=45.91 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=77.0
Q ss_pred hhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc-ChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC--CCccc
Q 001803 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC--PNNFT 83 (1011)
Q Consensus 7 p~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc--P~r~d 83 (1011)
..++..|-..+...++|+.|+||++-..+|.-||.. ..+...+.|...|-..|+|+|...-++=+-.+.-|| -..-.
T Consensus 573 ~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs 652 (1431)
T KOG1240|consen 573 QALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS 652 (1431)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee
Confidence 456777888899999999999999999999999886 332233557778888999999988766332222222 01100
Q ss_pred chHHHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001803 84 LIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 84 Lihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1011)
+-....--|...|.|-+|.--+..|..|.-.+.
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 111123457778899999988888888887763
No 102
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=72.21 E-value=1.2e+02 Score=31.09 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 301 ILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 301 IL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
++-.| +++|+..++.||.++..+ +++.....++.|-..|...|....-+.. |+..+.
T Consensus 7 ~lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~-L~~~l~ 63 (200)
T smart00543 7 LINKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYAR-LCALLN 63 (200)
T ss_pred HHhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHH-HHHHHH
Confidence 34444 479999999999987654 4578888889999999888866544333 333343
No 103
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.81 E-value=24 Score=40.04 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhC---CCcccchHH--------HHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001803 51 IEEIVGILLNDRSPGVVGAAAAAFASIC---PNNFTLIGR--------NYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 51 L~eil~~LL~D~dp~VvgsAv~Af~EIc---P~r~dLihk--------~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1011)
+..+++++ -++..++..++..+.+++ |.+.++++. .|..|++.+..-|.+-+...+.+|+....
T Consensus 60 ~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 60 FLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp --HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44444443 457788899999988887 556666665 68899998888899999999999988764
No 104
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=71.43 E-value=13 Score=42.02 Aligned_cols=81 Identities=27% Similarity=0.286 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHH
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYR 90 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yr 90 (1011)
+-.+..+.+.+.|.++.||..|+.|+.++- +| .-.+.|++ .|-+|.+..|-.+|+.+|..+-..+ ...
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~-~a~~~li~---~l~~d~~~~vR~~aa~aL~~~~~~~------a~~ 140 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELG--DP-EAVPPLVE---LLENDENEGVRAAAARALGKLGDER------ALD 140 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Ch-hHHHHHHH---HHHcCCcHhHHHHHHHHHHhcCchh------hhH
Confidence 456778899999999999999999888552 23 22233333 2233899999999999999997665 345
Q ss_pred HHHHhCCCCChhh
Q 001803 91 NLCQILPDVEEWG 103 (1011)
Q Consensus 91 kLc~~L~d~dEWg 103 (1011)
.|...+.+-..+.
T Consensus 141 ~l~~~l~~~~~~~ 153 (335)
T COG1413 141 PLLEALQDEDSGS 153 (335)
T ss_pred HHHHHhccchhhh
Confidence 6666776655544
No 105
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.19 E-value=1.1e+02 Score=36.03 Aligned_cols=245 Identities=14% Similarity=0.135 Sum_probs=147.2
Q ss_pred HhhcCCCChhhHHHHHHHHHHHhccChhh----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHh---CCCcccchHH-HH
Q 001803 18 GKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNNFTLIGR-NY 89 (1011)
Q Consensus 18 kk~l~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~L~eil~~LL~D~dp~VvgsAv~Af~EI---cP~r~dLihk-~y 89 (1011)
.+.++ ..--||..|+-||-.+-.+|... ....|..++ +|-+-++-.|--+|.-|+..+ -.+|-.|+|. ..
T Consensus 133 ~qmmt-d~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~plt-rLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~l 210 (550)
T KOG4224|consen 133 LQMMT-DGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLT-RLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGL 210 (550)
T ss_pred HHhcC-CCcEEEeeehhhhhhhhccccchhhhhhccchhhhH-hhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCc
Confidence 33444 45578999999999998885421 334566654 466778888888877776555 4566667764 46
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcc
Q 001803 90 RNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSR 169 (1011)
Q Consensus 90 rkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~ 169 (1011)
.-|+.+|+.-|.=.|-+.-..+...+-++. .+ + ...|.
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~------------~R-----------k---~Laqa---------------- 248 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRR------------AR-----------K---ILAQA---------------- 248 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHH------------HH-----------H---HHHhc----------------
Confidence 677778877666666554444333221110 00 0 00000
Q ss_pred ccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcCCHH-HHHHH----
Q 001803 170 SYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-DVKRI---- 244 (1011)
Q Consensus 170 ~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~-~l~~i---- 244 (1011)
.+ .++..+..|..+..+-|-..|....-.++... +...+
T Consensus 249 -------------------------ep-----------~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag 292 (550)
T KOG4224|consen 249 -------------------------EP-----------KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAG 292 (550)
T ss_pred -------------------------cc-----------chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcC
Confidence 00 14445555666667777777777766666532 22222
Q ss_pred -HHHHHHHhccCCcchHHHHHHHHHH--HHhCCc---ccc--ccccce--eeccCCcHHHHHHHHHHHHhhcC--CCCHH
Q 001803 245 -VKPLLFILRSSGASKYVVLCNIQVF--AKALPH---LFV--PHYEDF--FVSSSDSYQSKALKLEILSSIVT--ESSIS 312 (1011)
Q Consensus 245 -~~pLv~LL~s~~eiqYvvL~~I~~i--~~~~p~---lF~--~~l~~F--fv~~~Dp~~IK~lKLeIL~~Lan--e~Nv~ 312 (1011)
.+-|++||+++. .. .+|..+..| ...+|. +.. -|++-. ..++.|...|+.-+.+.|..|+- +.|+.
T Consensus 293 ~lP~lv~Llqs~~-~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~ 370 (550)
T KOG4224|consen 293 SLPLLVELLQSPM-GP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVS 370 (550)
T ss_pred CchHHHHHHhCcc-hh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhH
Confidence 234578997641 11 233333333 233441 211 123211 13578888899999999999985 77888
Q ss_pred HHHH-----HHHHhhccCChhHHHHHHHHHHHHHhhC
Q 001803 313 SVFK-----EFQDYIRDPDRRFAADTVAAIGLCARKL 344 (1011)
Q Consensus 313 ~IL~-----EL~~Yv~~~D~efv~~aI~AIG~~A~k~ 344 (1011)
.|.+ .|.+.+.+...+|..+.-.+|+.+|..-
T Consensus 371 ~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 371 VIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred HHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 7754 6777888988899999989999888653
No 106
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=71.16 E-value=64 Score=43.72 Aligned_cols=148 Identities=9% Similarity=0.139 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHH--HHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHH
Q 001803 309 SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMAN--TCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIK 386 (1011)
Q Consensus 309 ~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~--~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk 386 (1011)
.++...|+-+...+.++-..++.+|++++..+++.-|.+.. .+..+.-. . .+.....|.|+++
T Consensus 812 ~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~----R--------~~DssasVREAal--- 876 (1692)
T KOG1020|consen 812 QSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG----R--------LNDSSASVREAAL--- 876 (1692)
T ss_pred HhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH----h--------hccchhHHHHHHH---
Confidence 35556666666666666678888888888888877665431 11111111 0 0112345777654
Q ss_pred HHHhhCCcchHHHHHHHHHhh-hccCch--hHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHH
Q 001803 387 SIIKQDPSCHEKVIIQLFRSL-DSIKVP--EARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTT 463 (1011)
Q Consensus 387 ~Llq~~P~~~~~ii~~L~~~L-d~I~~p--~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~ 463 (1011)
.|+-++--.+...+.+.+..+ +.|.++ ..|..+|-|+-+-|..-+..+. .+++.-+|..+..+|+..+|-...-.+
T Consensus 877 dLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~~cakmlrRv~DEEg~I~kLv~etf 955 (1692)
T KOG1020|consen 877 DLVGRFVLSIPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVDMCAKMLRRVNDEEGNIKKLVRETF 955 (1692)
T ss_pred HHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 444433223333344444433 345553 5788889999988864443433 567777777788899887888888889
Q ss_pred HHHhhhcCC
Q 001803 464 IKVLLCAKG 472 (1011)
Q Consensus 464 aKL~~~~p~ 472 (1011)
.|+|+..+.
T Consensus 956 ~klWF~p~~ 964 (1692)
T KOG1020|consen 956 LKLWFTPVP 964 (1692)
T ss_pred HHHhccCCC
Confidence 999998754
No 107
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=70.74 E-value=2.5e+02 Score=35.95 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=53.7
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
...=.+..|.....|+=+.||+.|.-.|.-|..--|+.+.--|.-++ .-|.|.+.-+.+.|.+.+..+.
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lV-NKlGDpqnKiaskAsylL~~L~ 369 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLV-NKLGDPQNKIASKASYLLEGLL 369 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH-HhcCCcchhhhhhHHHHHHHHH
Confidence 34446678888999999999999999998887778843433344444 4588999999999999998874
No 108
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=69.47 E-value=20 Score=46.63 Aligned_cols=108 Identities=21% Similarity=0.358 Sum_probs=78.1
Q ss_pred chhhhHHHHHHH----HhhcCCCChhhHHHHHHHHHHHhcc-ChhhhHHHHHHHHHHH----hcCCChhHHHHHHHHHHH
Q 001803 6 LHVISPLVLVAV----GKCARDPSVFVRKCAANALPKLHEL-RQEEITSAIEEIVGIL----LNDRSPGVVGAAAAAFAS 76 (1011)
Q Consensus 6 Vp~I~piv~~aI----kk~l~D~SPYVRKtAA~AI~Kly~l-dpe~~~~~L~eil~~L----L~D~dp~VvgsAv~Af~E 76 (1011)
++.|+|+++.++ +++..-..-.||-+|++.+--+++- .|.+.++-+..+...| +=|+.-.+-.||.+||.|
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 446777777654 4555566778999999998888875 4533444333333333 449999999999999999
Q ss_pred hC------CCcccch-----------HHHHHHHHHhCCCCChhhHHHHHHHHHH
Q 001803 77 IC------PNNFTLI-----------GRNYRNLCQILPDVEEWGQILLIEILLR 113 (1011)
Q Consensus 77 Ic------P~r~dLi-----------hk~yrkLc~~L~d~dEWgQv~iL~lL~r 113 (1011)
.. |..++|+ ...|+.+|.-+.+++.+.+.++=++++.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~ 551 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK 551 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc
Confidence 96 4444442 3469999999999999999988888775
No 109
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.84 E-value=3.1e+02 Score=34.32 Aligned_cols=70 Identities=20% Similarity=0.129 Sum_probs=45.5
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHh-cCCChhHHHHHHHHHHHhCCC
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL-~D~dp~VvgsAv~Af~EIcP~ 80 (1011)
+.--+..-+-+-+-|..|-||+-|+.|+.|+-.+.- .....+..++..++ +|.+.-|-.+|+. -.++.+.
T Consensus 129 l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~-neen~~~n~l~~~vqnDPS~EVRr~all-ni~vdns 199 (885)
T COG5218 129 LANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL-NEENRIVNLLKDIVQNDPSDEVRRLALL-NISVDNS 199 (885)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhcCcHHHHHHHHHH-HeeeCCC
Confidence 444556677778889999999999999999876522 12223344555555 4888778766543 3344444
No 110
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=68.52 E-value=8 Score=40.82 Aligned_cols=71 Identities=25% Similarity=0.200 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccc
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL 84 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dL 84 (1011)
|.+..-+.+.+.+.++|+||.|..+..+.+.. ...+.+.+++..++.|.+..|--+.--+|.++.-...+.
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 45677888999999999999999999877665 345678888888999999999999999999998654443
No 111
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
Probab=67.94 E-value=35 Score=32.84 Aligned_cols=110 Identities=23% Similarity=0.255 Sum_probs=64.6
Q ss_pred cccccCCHHHHHHHhhcCCCCccccceeecccCcCcccccccchhhccchhhhhHHHHHHHhhhcccceeeecCcccccc
Q 001803 864 IKPVPMDMETFIEMESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAK 943 (1011)
Q Consensus 864 ~~p~~ms~~~f~~~~~~L~GM~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~ 943 (1011)
+-.-.|+.++|.+.=..|+--++...+...+.. ..... -.++-|+..|+..|.++ +
T Consensus 2 ~~d~~~~~~~F~~~W~sl~~~~~~e~~~~~~~~------------------~~~~~-~i~~~L~~~nI~~iA~~-----~ 57 (114)
T PF09066_consen 2 VEDGSMDPEEFQEMWKSLPDSNQQELSIQLNAS------------------VPSPD-AIEEKLQANNIFTIASG-----K 57 (114)
T ss_dssp -TT----HHHHHHHHHHS-GGG--EEEEEETT----------------------HH-HHHHHHHCTT-EEEEEE-----E
T ss_pred CCCCccCHHHHHHHHHhCCcccceEEEEecccc------------------CCcHH-HHHHHHHHCCEEEEecC-----C
Confidence 345679999999999999988855334444310 11112 34556699999999875 2
Q ss_pred cCCCCCCcee--eeeccccCCceEEEEEEeccccCCCcccEEEEcccchhHHHHHHHHHHHHh
Q 001803 944 FDDASGLSLR--FSSEILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFL 1004 (1011)
Q Consensus 944 ~~~~~~~~~r--fa~~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~ 1004 (1011)
.+ ++... ||+++- ++..+|+-+.+..... .++++|-|+..-++..++.-+..+|
T Consensus 58 -~~--~~~~~~y~s~~~~-~~~~fL~El~~~~~~~---~~~v~vK~~~~~~~~~f~~~~~~iL 113 (114)
T PF09066_consen 58 -VD--NGQKFFYFSAKTT-NGIWFLVELTIDPGSP---SVKVTVKSENPEMAPLFLQLFESIL 113 (114)
T ss_dssp -CT--T-EEEEEEEEEBT-TS-EEEEEEEE-TT-S---SEEEEEEESSCCCHHHHHHHHHHHC
T ss_pred -CC--ccccEEEEEEEcC-CCcEEEEEEEEcCCCc---cEEEEEecCCHHHHHHHHHHHHHHh
Confidence 22 22333 777764 7889999998854322 4789999999888777766666665
No 112
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.92 E-value=2e+02 Score=38.46 Aligned_cols=213 Identities=12% Similarity=0.060 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhccCCc-ch---HHHHHHHHHHHHhCCc---cccc----cccceeeccCCcHHHHHHHHHHHHhhcCC
Q 001803 240 DVKRIVKPLLFILRSSGA-SK---YVVLCNIQVFAKALPH---LFVP----HYEDFFVSSSDSYQSKALKLEILSSIVTE 308 (1011)
Q Consensus 240 ~l~~i~~pLv~LL~s~~e-iq---YvvL~~I~~i~~~~p~---lF~~----~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane 308 (1011)
.+..+++|.-+|+.+.+. .. ..+|.+|.-.+..+.+ -|.. .++.| .+.....-+.+..++++
T Consensus 193 flsl~~~~~yrllEn~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~f-------ehl~~~~ad~v~l~~sk 265 (1251)
T KOG0414|consen 193 FLSLIVDPIYRLLENEHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYF-------EHLAVHVADAVTLVRSK 265 (1251)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 367788999999976422 12 2333444333333221 1111 11111 12333344667777888
Q ss_pred CCHHHHHHHHHHhhccCCh-----hHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHH
Q 001803 309 SSISSVFKEFQDYIRDPDR-----RFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII 383 (1011)
Q Consensus 309 ~Nv~~IL~EL~~Yv~~~D~-----efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~ 383 (1011)
-|...|+..+..-+.+..+ ......-.-+..++.+.|...-+-+..|++|+.. +.+-+.-+|+
T Consensus 266 y~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~------------es~~lRnavl 333 (1251)
T KOG0414|consen 266 YGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDS------------ESYTLRNAVL 333 (1251)
T ss_pred cccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCC------------chHHHHHHHH
Confidence 8888888887776665433 2223333556678899999998999999997753 3444555554
Q ss_pred H-HHHHHh---hCCcc--hHH-----HHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccCh
Q 001803 384 S-IKSIIK---QDPSC--HEK-----VIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEA 452 (1011)
Q Consensus 384 v-Ik~Llq---~~P~~--~~~-----ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~ 452 (1011)
. +-+++. ++++. +.+ .+..|.+.+.++ .+..|.-++-+.-.-++....-+....+|++..+-+..+-+
T Consensus 334 ei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv-sa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkS 412 (1251)
T KOG0414|consen 334 EICANLVASELRDEELEEMSKSLRDELLELLRERLLDV-SAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKS 412 (1251)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhccccccc
Confidence 2 223332 23331 111 233333333333 26677777766555444322223346788888888888889
Q ss_pred HHHHHHHHHHHHHHhhhcCC
Q 001803 453 VETKLQILNTTIKVLLCAKG 472 (1011)
Q Consensus 453 ~~VKlqILta~aKL~~~~p~ 472 (1011)
..||-..+.+..++..++|-
T Consensus 413 slVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 413 SLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999984
No 113
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=67.88 E-value=37 Score=37.78 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=71.8
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhccChh-h-hHHHHHHHHHHHhcC-CChhHHHHHHHHHHHhCCC--cccchHHHH
Q 001803 15 VAVGKCARDPSVFVRKCAANALPKLHELRQE-E-ITSAIEEIVGILLND-RSPGVVGAAAAAFASICPN--NFTLIGRNY 89 (1011)
Q Consensus 15 ~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe-~-~~~~L~eil~~LL~D-~dp~VvgsAv~Af~EIcP~--r~dLihk~y 89 (1011)
.-|.+.+.+++|-||..|..|+.-+-.-.+. . -+.-+..+++..+.+ -+..|--+++.++..+.-. .=.++.+.+
T Consensus 57 ~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i 136 (254)
T PF04826_consen 57 SLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYI 136 (254)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhH
Confidence 4567889999999999999998865332221 1 122233444444443 3567777899999988632 224566788
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHhh
Q 001803 90 RNLCQILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 90 rkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
..|+++|..-++=.|+.+|++|...+
T Consensus 137 ~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 137 PDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 89999999889999999999999887
No 114
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=67.53 E-value=25 Score=39.26 Aligned_cols=185 Identities=14% Similarity=0.260 Sum_probs=96.2
Q ss_pred hhhhccCCC---hHHHHHHHHHHHhcCCHH----HHHHHHHHH--HHHhccCCcchHHHHHHHHHHHHhCCccccccccc
Q 001803 213 TSPLLWSHN---SAVVLAAAGVHWIMSPKE----DVKRIVKPL--LFILRSSGASKYVVLCNIQVFAKALPHLFVPHYED 283 (1011)
Q Consensus 213 ~~pLLqS~N---sAVVlaaa~l~~~lap~~----~l~~i~~pL--v~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~ 283 (1011)
+-|+||+.. ++.+.+.+.+|-+++|+. .-.++-++| +.-+.++|++|-..|+ ..-|-++.|+++.
T Consensus 29 La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~------a~iplyLyPfL~t 102 (262)
T PF04078_consen 29 LAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLK------AHIPLYLYPFLNT 102 (262)
T ss_dssp HHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHH------TTGGGGGHHHHH-
T ss_pred hhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHH------cCchhhehhhhhc
Confidence 356778666 355778888898998853 345665555 4455678988876665 3446666777643
Q ss_pred eeeccCCc-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhh
Q 001803 284 FFVSSSDS-YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQE 362 (1011)
Q Consensus 284 Ffv~~~Dp-~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~ 362 (1011)
-. .+-| .|+|.--|-++-.|+..+. .+++ .|+.+. +++.-..+.+-.=.+..-.++.-+++- +|..+
T Consensus 103 t~--k~r~~E~LRLtsLGVIgaLvK~d~-~evi----~fLl~t--EiiplcLr~me~GselSKtvAtfIlqK---IL~dd 170 (262)
T PF04078_consen 103 TS--KTRPFEYLRLTSLGVIGALVKTDD-PEVI----SFLLQT--EIIPLCLRIMEFGSELSKTVATFILQK---ILLDD 170 (262)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHTT---HHHH----HHHHCT--THHHHHHHHHHHS-HHHHHHHHHHHHH---HHHSH
T ss_pred cc--cccccchhhHhHHHHHHHHHcCCc-HHHH----HHHHhh--chHHHHHHHHHhccHHHHHHHHHHHHH---HHcch
Confidence 21 1223 6999999999999996444 3344 455543 455555544432111111223233322 22211
Q ss_pred hccccccCCCCCCcchhhHHHHHHHHH---hhCCcchHHHHHHHHHhhhccC-chhHHHHhh
Q 001803 363 LLTSDIESGNGEADVLIQSIISIKSII---KQDPSCHEKVIIQLFRSLDSIK-VPEARVMII 420 (1011)
Q Consensus 363 ~~~~~~~~~~~~~~vV~E~V~vIk~Ll---q~~P~~~~~ii~~L~~~Ld~I~-~p~ArAsIi 420 (1011)
.|..|+-....-......++..++ .++|. ...++++++++..+. +|.||.++-
T Consensus 171 ---~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS--~RLLKhIIrCYlRLsdnprar~aL~ 227 (262)
T PF04078_consen 171 ---VGLNYICQTAERFFAVAMVLNKMVEQLVKQPS--PRLLKHIIRCYLRLSDNPRAREALR 227 (262)
T ss_dssp ---HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred ---hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCC--hhHHHHHHHHHHHHccCHHHHHHHH
Confidence 011111000001111223455544 34553 367888888776654 588888754
No 115
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=67.20 E-value=4.6 Score=51.80 Aligned_cols=8 Identities=50% Similarity=0.638 Sum_probs=4.4
Q ss_pred HHHHHhhh
Q 001803 531 LVLVECIF 538 (1011)
Q Consensus 531 ~~la~~lf 538 (1011)
..+.++|+
T Consensus 588 ~vlveiLL 595 (784)
T PF04931_consen 588 EVLVEILL 595 (784)
T ss_pred HHHHHHHH
Confidence 45666553
No 116
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=66.89 E-value=5.1 Score=50.54 Aligned_cols=33 Identities=9% Similarity=0.285 Sum_probs=28.7
Q ss_pred ccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 001803 287 SSSDSYQSKALKLEILSSIVTESSISSVFKEFQ 319 (1011)
Q Consensus 287 ~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~ 319 (1011)
-.+++..||.++-..|+-|+....|.+||..|-
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 357788999999999999999999999998653
No 117
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=66.76 E-value=41 Score=32.91 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=59.8
Q ss_pred ccccccCCHHHHHHHhhcCCCCc-cccceeeccc--CcCcccccccchhhccchhhhhHHHHHHHhhhcccceeeecCcc
Q 001803 863 FIKPVPMDMETFIEMESRLPGMF-EYARSCTFTD--HLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMP 939 (1011)
Q Consensus 863 l~~p~~ms~~~f~~~~~~L~GM~-e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~ 939 (1011)
|+.|+.|+.++|.+.=..|.|=- |. +..|+- ..... | ..-.++++.--.+++++
T Consensus 1 F~~p~~l~~~~Ff~RWkql~~~~~E~--Q~vf~~~~~~~~~-----------~------~~~~~~~l~g~~~~vl~---- 57 (113)
T PF02296_consen 1 FMEPTTLSSEDFFQRWKQLGGPPQEA--QEVFKLKDAKRPM-----------D------LESIRRKLEGFGFAVLD---- 57 (113)
T ss_dssp GEEE----HHHHHHHHTTT-SGGGEE--EEEEE----SS--------------------HHHHHHHHHHHTSEEET----
T ss_pred CCCCccCCHHHHHHHHHhccCCcccc--EEEEcccccCCcc-----------c------HHHHHHHHhcCCeEecC----
Confidence 57899999999999999998754 54 555551 11111 1 33467778888888875
Q ss_pred cccccCCCCCCceeeeeccccCC----ceEEEEEEeccccCCCcccEEEEcccchhHHHHH
Q 001803 940 VAAKFDDASGLSLRFSSEILGNS----VPCLITITVEGKCSEPLKVSAKVNCEETVFGLNL 996 (1011)
Q Consensus 940 ~~~~~~~~~~~~~rfa~~t~~~~----~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l 996 (1011)
+.|.-.+ .=++|-+++++ ..||+.|+.. .... ...|||-|-+-.+--.|
T Consensus 58 ---~vDpnp~--n~v~Agi~~t~~~g~~gcLlRlE~n-~~~~--~~RlTvRst~~~vs~~l 110 (113)
T PF02296_consen 58 ---GVDPNPN--NIVGAGIFHTKSSGNVGCLLRLEPN-QDAK--MFRLTVRSTDPSVSKAL 110 (113)
T ss_dssp ---SSSSSTT--SEEEEEEEE-S-S-EEEEEEEEEEE-TTTT--EEEEEEEESSHHHHHHH
T ss_pred ---CCCCCcc--cEEEEEEEEecCCCcEEEEEEEeEC-CcCC--eEEEEEEECChhHHHHH
Confidence 2233222 23555555544 5788888764 1222 57899999888764444
No 118
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=66.10 E-value=69 Score=44.02 Aligned_cols=134 Identities=18% Similarity=0.164 Sum_probs=83.8
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHH-HHHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHhCCcccccc-
Q 001803 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKE-DVKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPH- 280 (1011)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~-~l~~i~~pLv~LL~s--~~eiqYvvL~~I~~i~~~~p~lF~~~- 280 (1011)
.-||..+.-||+|.++.|+--++.+|.++- -.. ..+.+++.|+.++.+ +.|+- .+|+.+..|+..+|+...+|
T Consensus 434 ~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~-~aL~vL~~L~~~~~~~l~~fa 512 (1426)
T PF14631_consen 434 PSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVD-AALDVLCELAEKNPSELQPFA 512 (1426)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHH-HHHHHHTH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHhccHHHHHHHH
Confidence 456777788999999998777777765442 122 235688899988743 35665 78999999999998765554
Q ss_pred --ccceeeccC--CcHHHHHHHHHHHHhhcCC--CCHHHHHHH----HHHhhccCChhHHHHHH----HHHHHHHh
Q 001803 281 --YEDFFVSSS--DSYQSKALKLEILSSIVTE--SSISSVFKE----FQDYIRDPDRRFAADTV----AAIGLCAR 342 (1011)
Q Consensus 281 --l~~Ffv~~~--Dp~~IK~lKLeIL~~Lane--~Nv~~IL~E----L~~Yv~~~D~efv~~aI----~AIG~~A~ 342 (1011)
++...-..+ .+.+||++ .+||+.|+-. .+...|-+| ++.++.+.+..+++.-| ..|+.+|.
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~l-f~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKL-FDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHH-HHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCHHHHHHH-HHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Confidence 433322222 24678888 9999999832 223455566 44566677777666544 44444444
No 119
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.05 E-value=3.2e+02 Score=33.46 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=74.2
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh---hH-HHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC--cc
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE---IT-SAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NF 82 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~---~~-~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~--r~ 82 (1011)
...-++..+-.-++|++.-+|.-|+-++..+|...|+. ++ ..++-+|..|..|.+..|+.-|+.++.-+.|. .+
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 34456677788899999999999999999999998853 33 45777888888888899999999999888763 23
Q ss_pred cc---hHHHHHHHHHhCCCCChh---hHHHHHHHHHHhh
Q 001803 83 TL---IGRNYRNLCQILPDVEEW---GQILLIEILLRYV 115 (1011)
Q Consensus 83 dL---ihk~yrkLc~~L~d~dEW---gQv~iL~lL~rY~ 115 (1011)
++ +-...-++.++..+.+.= .-.++...|..|+
T Consensus 335 ~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~ 373 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLA 373 (533)
T ss_pred chhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHc
Confidence 22 122333444444443332 2345555566665
No 120
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=65.60 E-value=14 Score=45.54 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=57.7
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHh
Q 001803 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (1011)
Q Consensus 16 aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~ 95 (1011)
.|-.++. -++-+.+-||-=|+|.|+.-| +..+.-++.+-.|..|.|..|-..|+..|-.+|-+.-+++.+..--|+.+
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP-~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFP-DLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQL 104 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-G-GGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHH
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHH
Confidence 3444444 368899999999999999999 54444445555788899999999999999999988888899999999998
Q ss_pred CC
Q 001803 96 LP 97 (1011)
Q Consensus 96 L~ 97 (1011)
|.
T Consensus 105 L~ 106 (556)
T PF05918_consen 105 LQ 106 (556)
T ss_dssp TT
T ss_pred Hh
Confidence 86
No 121
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.60 E-value=21 Score=46.76 Aligned_cols=110 Identities=19% Similarity=0.217 Sum_probs=82.1
Q ss_pred ccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc--
Q 001803 4 IRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN-- 81 (1011)
Q Consensus 4 IRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r-- 81 (1011)
+|-|.+++.-..-+-+-+.|.+|-|||+|.+-+..|.-.|-=-.+.++-+ +-.+|.|.++.+-.=|=.=|.|+.-..
T Consensus 990 v~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~e-MA~cl~D~~~~IsdlAk~FF~Els~k~n~ 1068 (1251)
T KOG0414|consen 990 VRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSE-MALCLEDPNAEISDLAKSFFKELSSKGNT 1068 (1251)
T ss_pred hhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHH-HHHHhcCCcHHHHHHHHHHHHHhhhcccc
Confidence 57788899999999999999999999999999998876654125666766 457899999988665656678886332
Q ss_pred -ccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001803 82 -FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 82 -~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1011)
++|+.....+|=+. .++|=.=..+|+.|..|..
T Consensus 1069 iynlLPdil~~Ls~~--~l~~~~~~~vm~~li~~ik 1102 (1251)
T KOG0414|consen 1069 IYNLLPDILSRLSNG--NLEEESYKTVMEFLIGLIK 1102 (1251)
T ss_pred hhhhchHHHHhhccC--cccchhhHHHHHHHHHHhc
Confidence 45555555555554 4666666778888888863
No 122
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.88 E-value=4.4e+02 Score=34.74 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=55.8
Q ss_pred HHHHhhhhhccccCCCCCccccHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHhhhcCCC----ChHHHHHHHHHHHHHH
Q 001803 415 ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK-SEAVETKLQILNTTIKVLLCAKGG----DMWTITRLFSYLLELA 489 (1011)
Q Consensus 415 ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~-~E~~~VKlqILta~aKL~~~~p~e----~~~~l~~L~qyVL~La 489 (1011)
.||...|++|.||+.-=+.+..+...++.-.+.+. +-+..||.+.- ++.+.|+.+... ....+..+.|.+|.+.
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAa-lALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAA-LALQSFISNQEQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHH-HHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH
Confidence 57777899999996421345555566666666666 44455666653 344555554321 1223455556666655
Q ss_pred ccCCChH-----------------------HHhHHHHHHHHccCCC
Q 001803 490 ECDLNYD-----------------------VRDRARFFKKLFSHNL 512 (1011)
Q Consensus 490 ~~D~n~D-----------------------VRDRAr~y~~LL~~~~ 512 (1011)
+.=.|-| .+.=|+-+++++..+.
T Consensus 557 ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~ 602 (1010)
T KOG1991|consen 557 NEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSE 602 (1010)
T ss_pred HhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccC
Confidence 4322222 3566788888888633
No 123
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=64.58 E-value=8.2 Score=28.57 Aligned_cols=28 Identities=43% Similarity=0.475 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 51 IEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 51 L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
|++.+.++|+|.++.|=-+|+.+|.+++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4567778999999999999999998875
No 124
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.18 E-value=74 Score=39.03 Aligned_cols=110 Identities=15% Similarity=0.299 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHH-HHHHHHhhCCcchHHHHHHHHHh
Q 001803 328 RFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSII-SIKSIIKQDPSCHEKVIIQLFRS 406 (1011)
Q Consensus 328 efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~-vIk~Llq~~P~~~~~ii~~L~~~ 406 (1011)
+|+.+.+..+.-+|--+..+ .|+..+..-+..+ + ...-..|+.. .++.++++-+.....++..+.+.
T Consensus 367 ~fR~~v~dvl~Dv~~iigs~--e~lk~~~~~l~e~---------~-~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~ 434 (559)
T KOG2081|consen 367 EFRLKVGDVLKDVAFIIGSD--ECLKQMYIRLKEN---------N-ASWEEVEAALFILRAVAKNVSPEENTIMPEVLKL 434 (559)
T ss_pred HHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHccC---------C-CchHHHHHHHHHHHHHhccCCccccchHHHHHHH
Confidence 67878888888777776654 5666666555421 1 1223455543 56777766555555677777776
Q ss_pred hhccC--chhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhcc
Q 001803 407 LDSIK--VPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKS 450 (1011)
Q Consensus 407 Ld~I~--~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~ 450 (1011)
+-++. .| .|..-+-++|+|++-.+..|.+..-+++++-..+..
T Consensus 435 i~nlp~Q~~-~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~ 479 (559)
T KOG2081|consen 435 ICNLPEQAP-LRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQL 479 (559)
T ss_pred HhCCccchh-HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhh
Confidence 65543 34 677778999999987777888888888877655543
No 125
>PF05536 Neurochondrin: Neurochondrin
Probab=64.12 E-value=1.9e+02 Score=35.77 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=94.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCH---HHHHHH---HHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhh
Q 001803 290 DSYQSKALKLEILSSIVTESSI---SSVFKE---FQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQEL 363 (1011)
Q Consensus 290 Dp~~IK~lKLeIL~~Lane~Nv---~~IL~E---L~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~ 363 (1011)
++..-+.+.+.||..++++.++ ..++.- |.+.+...+. ....+.|+..|..+...+
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~-----------------~~~v~dalqcL~~Ias~~- 130 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSD-----------------LETVDDALQCLLAIASSP- 130 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCc-----------------hhHHHHHHHHHHHHHcCc-
Confidence 5678899999999999986655 222222 2222222222 133444445444444321
Q ss_pred ccccccCCCCCCcch-hhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHH
Q 001803 364 LTSDIESGNGEADVL-IQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK 442 (1011)
Q Consensus 364 ~~~~~~~~~~~~~vV-~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR 442 (1011)
.|....+ ..+|..|..++.+++..++..+..|...+..... -.|- ++. ....-++.
T Consensus 131 --------~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~------~~~~--~~~-------~~l~~il~ 187 (543)
T PF05536_consen 131 --------EGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQ------KSWA--EDS-------QLLHSILP 187 (543)
T ss_pred --------HhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcch------hhhh--hhH-------HHHHHHHH
Confidence 1111111 1245567777777666555554444443332110 0122 222 12345677
Q ss_pred HHHHhhccChHHHHHHHHHHHHHHhhhcCC---C---ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 001803 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKG---G---DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (1011)
Q Consensus 443 ~l~k~F~~E~~~VKlqILta~aKL~~~~p~---e---~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL 508 (1011)
.+++.|..-....|.+++.....++-..|. . ...-...+..++-.+-+.-..+.-|+=|......+
T Consensus 188 ~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~L 259 (543)
T PF05536_consen 188 SLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASL 259 (543)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 888899888889999999999999887742 1 11113334444333333445666677665554443
No 126
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=64.06 E-value=4.7e+02 Score=34.78 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 315 L~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
++-|..+.+..+.++.......-|+.-.+.|+.. --++.+|+.|.
T Consensus 547 Lk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~-lrM~~~Le~i~ 591 (1128)
T KOG2051|consen 547 LKMLLNDFTHHNIEMACVLLESCGRFLLRSPETK-LRMRVFLEQIK 591 (1128)
T ss_pred HHHHHHhcccccHHHHHHHHHhcchhhhcChhHH-HHHHHHHHHHH
Confidence 3444445566677777777777777777777654 33455555554
No 127
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=62.25 E-value=1e+02 Score=34.49 Aligned_cols=68 Identities=15% Similarity=0.319 Sum_probs=51.2
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhh
Q 001803 315 FKEFQDYIRDPDRRFAADTVAAIGLCARKLPK--MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (1011)
Q Consensus 315 L~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~--~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~ 391 (1011)
++.|..|+++.|...+.+++..++.+..++|. ....-++.|+++..... .+...+..++..+..|+++
T Consensus 1 V~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl---------~D~~~~~~~l~gl~~L~~~ 70 (262)
T PF14500_consen 1 VQSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL---------DDHACVQPALKGLLALVKM 70 (262)
T ss_pred CcchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh---------ccHhhHHHHHHHHHHHHhC
Confidence 35788999999999999999999999999995 34555677777765421 2344577777788888854
No 128
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=61.65 E-value=39 Score=41.27 Aligned_cols=62 Identities=18% Similarity=0.167 Sum_probs=42.8
Q ss_pred HHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccCh
Q 001803 388 IIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEA 452 (1011)
Q Consensus 388 Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~ 452 (1011)
|.|+.|+..+.-+..|+..+.+-+....+-.|+-.|..|+.. ..|. ..+.+|.+++.|..-.
T Consensus 226 I~Qk~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv--~l~~-~~E~l~e~~~~~p~~~ 287 (851)
T KOG3723|consen 226 IKQKQLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPV--ALNS-FLEMLKEIGERFPYLT 287 (851)
T ss_pred HHhccHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCcc--chhh-HHHHHHHHHHhCCCcc
Confidence 346677777777888888776666667788888888888753 1232 4566777887776543
No 129
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=60.97 E-value=33 Score=42.35 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=69.1
Q ss_pred chhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhH---HHHHHHHHHHhCCCcc
Q 001803 6 LHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGV---VGAAAAAFASICPNNF 82 (1011)
Q Consensus 6 Vp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~V---vgsAv~Af~EIcP~r~ 82 (1011)
-|.+..-.+.|+...+.|.+.-||+.|.-+|+.+++-+| +....+.++|.+||.-.++.. |-+|++.+..+.|..
T Consensus 53 FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~-~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~- 130 (556)
T PF05918_consen 53 FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP-EHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG- 130 (556)
T ss_dssp -GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH-
T ss_pred ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH-HHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH-
Confidence 477888899999999999999999999999999999888 778889999999998656554 444555555554443
Q ss_pred cchHHHHHHHHHhCC---CCChhhHHHHHHHHHHh
Q 001803 83 TLIGRNYRNLCQILP---DVEEWGQILLIEILLRY 114 (1011)
Q Consensus 83 dLihk~yrkLc~~L~---d~dEWgQv~iL~lL~rY 114 (1011)
...-|+..+. .-||--...+|.+|.-.
T Consensus 131 -----tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 131 -----TLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp -----HHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 5566777665 45665566667766543
No 130
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=60.66 E-value=4e+02 Score=32.83 Aligned_cols=193 Identities=11% Similarity=0.118 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCC
Q 001803 292 YQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESG 371 (1011)
Q Consensus 292 ~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~ 371 (1011)
...|..=+|.|....+...+..|.+.+..-- .. ..++.+.+..+....+.-....++.+..|++....
T Consensus 340 ~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~--~~---~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~------- 407 (574)
T smart00638 340 KKARRIFLDAVAQAGTPPALKFIKQWIKNKK--IT---PLEAAQLLAVLPHTARYPTEEILKALFELAESPEV------- 407 (574)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCC--CC---HHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccc-------
Confidence 4588888999999999999999988777631 11 13455556665555556667889999998874211
Q ss_pred CCCCcchhh-HHHHHHHHHhh----CCcch----HHHHHHHHHhhhcc---CchhHHHHhhhhhccccCCCCCccccHHH
Q 001803 372 NGEADVLIQ-SIISIKSIIKQ----DPSCH----EKVIIQLFRSLDSI---KVPEARVMIIWMVGEYSSVGVKIPRMLTT 439 (1011)
Q Consensus 372 ~~~~~vV~E-~V~vIk~Llq~----~P~~~----~~ii~~L~~~Ld~I---~~p~ArAsIiWLIGEY~~~~e~ip~ia~d 439 (1011)
.....+.. ++..+-.++++ .+..+ ...+..|.+.|... .+..-+..+|=-||--| .|.+++-
T Consensus 408 -~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-----~~~~i~~ 481 (574)
T smart00638 408 -QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-----HPSSIKV 481 (574)
T ss_pred -cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-----ChhHHHH
Confidence 11223444 45566666654 23223 44555555555432 22333445566677654 3444433
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCC
Q 001803 440 VLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (1011)
Q Consensus 440 vLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~ 511 (1011)
|..++..=..-+..+|.+.+.++-++-...|.. ++.++--++. ..+.++|||=-|+ ..|+.+.
T Consensus 482 -l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~----v~~~l~~i~~--n~~e~~EvRiaA~--~~lm~t~ 544 (574)
T smart00638 482 -LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK----VQEVLLPIYL--NRAEPPEVRMAAV--LVLMETK 544 (574)
T ss_pred -HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH----HHHHHHHHHc--CCCCChHHHHHHH--HHHHhcC
Confidence 333333222345789999999999887777763 3332222322 1346888887775 4556553
No 131
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=59.26 E-value=17 Score=37.81 Aligned_cols=64 Identities=22% Similarity=0.151 Sum_probs=52.2
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001803 15 VAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 15 ~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~ 80 (1011)
.-+.+-+.+.++|+||+|..+..+.+... ...+.+.+++..++.|.+..|--+..-+|.++.-.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~--~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKE--TDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 36788899999999999999999988762 34567888899999999998888877888887643
No 132
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=58.02 E-value=22 Score=43.66 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=59.0
Q ss_pred CCCccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 1 MssIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~ 80 (1011)
++.+..|.+++.+.+-+. +-...++++|..|+.|+.++-..+|+...+.|.++. +-.+.++-|=.+|+.++.+.-|.
T Consensus 470 LGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~--~n~~e~~EvRiaA~~~lm~t~P~ 546 (574)
T smart00638 470 LGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY--LNRAEPPEVRMAAVLVLMETKPS 546 (574)
T ss_pred hhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCC
Confidence 456778888888887776 567788999999999999888778844445455433 12256788989999999998887
Q ss_pred c
Q 001803 81 N 81 (1011)
Q Consensus 81 r 81 (1011)
.
T Consensus 547 ~ 547 (574)
T smart00638 547 V 547 (574)
T ss_pred H
Confidence 5
No 133
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=57.67 E-value=76 Score=32.35 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=51.1
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhccCCcchHHHHHHHHHHHHhCCccccccc
Q 001803 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1011)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv-~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l 281 (1011)
++-+++.+.+..-|-+++|+++-.+-. . ...-+.++++|. ||-..++++++.+|.-+..++..++..|...+
T Consensus 4 ~iekATse~l~~~dw~~il~icD~I~~-~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 76 (144)
T cd03568 4 LVEKATDEKLTSENWGLILDVCDKVKS-D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEV 76 (144)
T ss_pred HHHHHcCccCCCcCHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 445667777777777888887765432 1 223455666665 44456799999999999999999998887654
No 134
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.52 E-value=5.5e+02 Score=33.41 Aligned_cols=88 Identities=23% Similarity=0.165 Sum_probs=49.8
Q ss_pred CCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhCCCcc-------cchHHH----HH
Q 001803 23 DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPNNF-------TLIGRN----YR 90 (1011)
Q Consensus 23 D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~-dp~VvgsAv~Af~EIcP~r~-------dLihk~----yr 90 (1011)
++.|-|||+|=-|+-.+-. |..--+.++.-+-++. ++..-++|..+|..-|..+| ..++.. ++
T Consensus 16 ~pdps~rk~aEr~L~~~e~-----q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ik 90 (960)
T KOG1992|consen 16 SPDPSVRKPAERALRSLEG-----QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIK 90 (960)
T ss_pred CCCCccCchHHHHHHHhcc-----CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHH
Confidence 3558899999888764322 2222233443223344 67777888899988875433 223222 22
Q ss_pred H-HHHhCCCCChhhHHHHHHHHHHhh
Q 001803 91 N-LCQILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 91 k-Lc~~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
+ ++.++-....=-|+.+=+.|.--+
T Consensus 91 slIv~lMl~s~~~iQ~qlseal~~Ig 116 (960)
T KOG1992|consen 91 SLIVTLMLSSPFNIQKQLSEALSLIG 116 (960)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 2 233334444555777777776665
No 135
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=55.66 E-value=4.2e+02 Score=31.46 Aligned_cols=182 Identities=16% Similarity=0.194 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhcCCC----CHHHHHHHHHHhh-ccCChhHHHHHHHHHHH----HHhhCcccHHHHHHHHHHHHHhh
Q 001803 292 YQSKALKLEILSSIVTES----SISSVFKEFQDYI-RDPDRRFAADTVAAIGL----CARKLPKMANTCVEGLLALIRQE 362 (1011)
Q Consensus 292 ~~IK~lKLeIL~~Lane~----Nv~~IL~EL~~Yv-~~~D~efv~~aI~AIG~----~A~k~p~~a~~cl~~LL~LLs~~ 362 (1011)
..+|.-.+.+|..|+|.- -+..+++.+.... ...+..-...++..+.- +..|..+.+...++.|+.+|...
T Consensus 204 ~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~ 283 (415)
T PF12460_consen 204 EFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSSP 283 (415)
T ss_pred hHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCCh
Confidence 457777777888888762 2344555554444 23333444444433322 23455666777778888877631
Q ss_pred hccccccCCCCCCcchhhHHHHHHHHHhhCCc-----------------chHHHHHHHHHhhhccCc---hhHHHHhhhh
Q 001803 363 LLTSDIESGNGEADVLIQSIISIKSIIKQDPS-----------------CHEKVIIQLFRSLDSIKV---PEARVMIIWM 422 (1011)
Q Consensus 363 ~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~-----------------~~~~ii~~L~~~Ld~I~~---p~ArAsIiWL 422 (1011)
.. ...++.+ +.-|+.-.++ .+..++..|.+.+..-.+ +....++..+
T Consensus 284 ~~----------g~~aA~~---f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~l 350 (415)
T PF12460_consen 284 EL----------GQQAAKA---FGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHL 350 (415)
T ss_pred hh----------HHHHHHH---HhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 00 0123332 2222221111 133445555555544332 2223344455
Q ss_pred hccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 001803 423 VGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLEL 488 (1011)
Q Consensus 423 IGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~L 488 (1011)
+.--... -..++ .+.++..+.+.....+..++...|.+..-+.-..|+-..+-+..++..++++
T Consensus 351 l~~vP~~-vl~~~-l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 351 LKNVPKS-VLLPE-LPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HhhCCHH-HHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 5522110 01222 4677888888888888889999999887777666543333455555555544
No 136
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.30 E-value=1.1e+02 Score=35.77 Aligned_cols=248 Identities=13% Similarity=0.106 Sum_probs=139.5
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHH-----HHHHHHHHhcCCChhHHHHHHHHHHHhCCCcc---cc-
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSA-----IEEIVGILLNDRSPGVVGAAAAAFASICPNNF---TL- 84 (1011)
Q Consensus 14 ~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~-----L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~---dL- 84 (1011)
+.++.|.++..+--||+.|.-|+..+-+... .+.. =++++-.||.-.|+.|---+..|+..|--++. -|
T Consensus 169 L~pltrLakskdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~La 246 (550)
T KOG4224|consen 169 LEPLTRLAKSKDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILA 246 (550)
T ss_pred hhhhHhhcccchhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4456678888999999999999988766533 1112 23566678888999998888888887765531 11
Q ss_pred --hHHHHHHHHHhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchh
Q 001803 85 --IGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE 162 (1011)
Q Consensus 85 --ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~ 162 (1011)
=.|.+++|+.++.+-++-.|+..=..|...+-... |..+-.
T Consensus 247 qaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~--------Yq~eiv----------------------------- 289 (550)
T KOG4224|consen 247 QAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE--------YQREIV----------------------------- 289 (550)
T ss_pred hcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch--------hhhHHH-----------------------------
Confidence 12356677777777776666554444433331100 000000
Q ss_pred hhhhhccccccccccccccCCCcccccccccCccccCCCCChhHHHHHHhhhhhccCCChHHHHHHHHHH--HhcCCHHH
Q 001803 163 LVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVH--WIMSPKED 240 (1011)
Q Consensus 163 ~~~~~~~~~i~~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~--~~lap~~~ 240 (1011)
+. .+ |-....|||+..--.++|-+-|+ +.+.|-.+
T Consensus 290 --------------~a-----------------g~------------lP~lv~Llqs~~~plilasVaCIrnisihplNe 326 (550)
T KOG4224|consen 290 --------------EA-----------------GS------------LPLLVELLQSPMGPLILASVACIRNISIHPLNE 326 (550)
T ss_pred --------------hc-----------------CC------------chHHHHHHhCcchhHHHHHHHHHhhcccccCcc
Confidence 00 00 01123445666555566666666 34445332
Q ss_pred H----HHHHHHHHHHhcc-CC-cchHHHHHHHHHHHHhC---Cc-ccccc-ccceeeccCC-cHHHHHHHHHHHHhhcCC
Q 001803 241 V----KRIVKPLLFILRS-SG-ASKYVVLCNIQVFAKAL---PH-LFVPH-YEDFFVSSSD-SYQSKALKLEILSSIVTE 308 (1011)
Q Consensus 241 l----~~i~~pLv~LL~s-~~-eiqYvvL~~I~~i~~~~---p~-lF~~~-l~~Ffv~~~D-p~~IK~lKLeIL~~Lane 308 (1011)
. ....+||++||+- ++ |+|.-+...+.-++..+ .. +|..- +....++.-| |-.++..-=--+..|+-.
T Consensus 327 ~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~ 406 (550)
T KOG4224|consen 327 VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN 406 (550)
T ss_pred cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc
Confidence 1 3467899999984 55 49988888777776532 22 33321 2223333333 556666555555556555
Q ss_pred CCHHH------HHHHHHHhhccCChhHHHHHHHHHHHHHhh
Q 001803 309 SSISS------VFKEFQDYIRDPDRRFAADTVAAIGLCARK 343 (1011)
Q Consensus 309 ~Nv~~------IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k 343 (1011)
+|.+. |+.=|..+.-+...++.-.+..|++.+...
T Consensus 407 d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 407 DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 55543 222334444455667777777777765544
No 137
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=54.62 E-value=2.6e+02 Score=33.91 Aligned_cols=80 Identities=14% Similarity=0.177 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHHHHhCC-ccccccccc-----eeeccC-CcHHHHHHHHHHHHhhcCCC------CHHHHHHHHHHhhc
Q 001803 257 ASKYVVLCNIQVFAKALP-HLFVPHYED-----FFVSSS-DSYQSKALKLEILSSIVTES------SISSVFKEFQDYIR 323 (1011)
Q Consensus 257 eiqYvvL~~I~~i~~~~p-~lF~~~l~~-----Ffv~~~-Dp~~IK~lKLeIL~~Lane~------Nv~~IL~EL~~Yv~ 323 (1011)
+-+--+|..|..|..... .+.+.|+.. |-++.+ ....+|.+.|.+|..+++.. ..+..+..+.+-..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ 381 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAK 381 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHh
Confidence 345678888888876553 455555543 223332 34569999999999988753 44556666666666
Q ss_pred cCChhHHHHHHHH
Q 001803 324 DPDRRFAADTVAA 336 (1011)
Q Consensus 324 ~~D~efv~~aI~A 336 (1011)
+.+++.++.|..+
T Consensus 382 ds~~~v~~~Aeed 394 (516)
T KOG2956|consen 382 DSQDEVMRVAEED 394 (516)
T ss_pred CCchhHHHHHHHH
Confidence 6666666655543
No 138
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=53.32 E-value=1.3e+02 Score=37.37 Aligned_cols=195 Identities=12% Similarity=0.173 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccC
Q 001803 291 SYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIES 370 (1011)
Q Consensus 291 p~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~ 370 (1011)
...+|..=+|+|....|...+..|.+.+.. .... -.++++.|..++.....-....|+.+..|++.....
T Consensus 377 ~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~---~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~----- 446 (618)
T PF01347_consen 377 KEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLT---DDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVK----- 446 (618)
T ss_dssp -HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S----HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCC---HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCcccc-----
Confidence 367899999999999999988888887765 1222 233556666666555456677888888888642111
Q ss_pred CCCCCcchhh-HHHHHHHHHhh---C-----------CcchHHHHHHHHHhhhcc---CchhHHHHhhhhhccccCCCCC
Q 001803 371 GNGEADVLIQ-SIISIKSIIKQ---D-----------PSCHEKVIIQLFRSLDSI---KVPEARVMIIWMVGEYSSVGVK 432 (1011)
Q Consensus 371 ~~~~~~vV~E-~V~vIk~Llq~---~-----------P~~~~~ii~~L~~~Ld~I---~~p~ArAsIiWLIGEY~~~~e~ 432 (1011)
....+.+ ++..+-.++.+ + .....+++..|.+.+... .+..-+..++=-||--|
T Consensus 447 ---~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----- 518 (618)
T PF01347_consen 447 ---NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----- 518 (618)
T ss_dssp ---T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----
T ss_pred ---CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC-----
Confidence 1123444 45566666643 2 122334455555555421 22344445555666544
Q ss_pred ccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCC
Q 001803 433 IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNL 512 (1011)
Q Consensus 433 ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~~ 512 (1011)
.|.+++.+..++ ..-...+..+|.+.+.++-++-...|. .+..++--|+.- ...++|||==| |..|+.+.+
T Consensus 519 ~~~~i~~l~~~i-~~~~~~~~~~R~~Ai~Alr~~~~~~~~----~v~~~l~~I~~n--~~e~~EvRiaA--~~~lm~~~P 589 (618)
T PF01347_consen 519 HPESIPVLLPYI-EGKEEVPHFIRVAAIQALRRLAKHCPE----KVREILLPIFMN--TTEDPEVRIAA--YLILMRCNP 589 (618)
T ss_dssp -GGGHHHHHTTS-TTSS-S-HHHHHHHHHTTTTGGGT-HH----HHHHHHHHHHH---TTS-HHHHHHH--HHHHHHT--
T ss_pred CchhhHHHHhHh-hhccccchHHHHHHHHHHHHHhhcCcH----HHHHHHHHHhcC--CCCChhHHHHH--HHHHHhcCC
Confidence 345555444333 233355778999999998888555554 333333333321 33578888888 466776643
No 139
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=52.72 E-value=36 Score=37.89 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHhhcCCC--ChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhc----CCChhHHHHHHHHHHHhCCCcc-cchHH
Q 001803 15 VAVGKCARDP--SVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN----DRSPGVVGAAAAAFASICPNNF-TLIGR 87 (1011)
Q Consensus 15 ~aIkk~l~D~--SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~----D~dp~VvgsAv~Af~EIcP~r~-dLihk 87 (1011)
..|++.+.|+ ..|||-.|.-|+..+....| ..++.++..+..++. .+...|.|+=+.....++|..+ ..|.+
T Consensus 114 ~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~-~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~ 192 (249)
T PF06685_consen 114 EPLKELIEDPDADEYVRMAAISALAFLVHEGP-ISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRK 192 (249)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHH
Confidence 3667777765 47899999999999999988 667777777666654 3334466887888889998873 44555
Q ss_pred HHH
Q 001803 88 NYR 90 (1011)
Q Consensus 88 ~yr 90 (1011)
.|.
T Consensus 193 ~f~ 195 (249)
T PF06685_consen 193 AFE 195 (249)
T ss_pred HHH
Confidence 554
No 140
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.32 E-value=57 Score=37.87 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=70.6
Q ss_pred hcCCCChhhHHHHHHHHHHHhccChhhhH-----HHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc------ccchHHH
Q 001803 20 CARDPSVFVRKCAANALPKLHELRQEEIT-----SAIEEIVGILLNDRSPGVVGAAAAAFASICPNN------FTLIGRN 88 (1011)
Q Consensus 20 ~l~D~SPYVRKtAA~AI~Kly~ldpe~~~-----~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r------~dLihk~ 88 (1011)
.+.+.++-||+.||--|..+.+-+|..|. ..+-.++..|-.|.+-.|...|+.|+....-+. +-.++.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G- 210 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG- 210 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-
Confidence 89999999999999999999999994322 223334444444666677789999988775432 222333
Q ss_pred HHHHHHhCCC--CChhhHHHHHHHHHHhhh
Q 001803 89 YRNLCQILPD--VEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 89 yrkLc~~L~d--~dEWgQv~iL~lL~rY~r 116 (1011)
|.-|.+.|.. .+-=.|++++.++..+..
T Consensus 211 ~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 211 YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 7788888876 788889999999988863
No 141
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=52.06 E-value=3.8e+02 Score=29.91 Aligned_cols=151 Identities=17% Similarity=0.118 Sum_probs=86.8
Q ss_pred HHHHHHhhhhhccCCChHHHHHHHHHHHhcCC-----H----HH---HHHHHHHH---HHHhccC---CcchHHHHHHHH
Q 001803 206 VKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP-----K----ED---VKRIVKPL---LFILRSS---GASKYVVLCNIQ 267 (1011)
Q Consensus 206 l~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap-----~----~~---l~~i~~pL---v~LL~s~---~eiqYvvL~~I~ 267 (1011)
...++..+++++....|-.+...++++|.++- . .. ++++...+ ......+ .+.|+.+|+.+.
T Consensus 12 A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La 91 (278)
T PF08631_consen 12 AEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLA 91 (278)
T ss_pred HHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHH
Confidence 35677788888878888888888888887642 1 11 23332222 2222222 367888888776
Q ss_pred HHHHh--CCccccc---cccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 001803 268 VFAKA--LPHLFVP---HYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCAR 342 (1011)
Q Consensus 268 ~i~~~--~p~lF~~---~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~ 342 (1011)
..... .++-+.. .++..---+.++..+..+||++|....+..-+..+|..+..-+.-.+ .-...++..|..++.
T Consensus 92 ~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e-~~~~~~l~~i~~l~~ 170 (278)
T PF08631_consen 92 NAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE-SNFDSILHHIKQLAE 170 (278)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc-chHHHHHHHHHHHHh
Confidence 65432 1222211 11111112345667999999999995555555555555444432222 233345677788888
Q ss_pred hCcccHHHHHHHHHH
Q 001803 343 KLPKMANTCVEGLLA 357 (1011)
Q Consensus 343 k~p~~a~~cl~~LL~ 357 (1011)
+-+..+-.|++-++.
T Consensus 171 ~~~~~a~~~ld~~l~ 185 (278)
T PF08631_consen 171 KSPELAAFCLDYLLL 185 (278)
T ss_pred hCcHHHHHHHHHHHH
Confidence 888877777766554
No 142
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.93 E-value=6.5e+02 Score=32.93 Aligned_cols=208 Identities=17% Similarity=0.122 Sum_probs=122.1
Q ss_pred ccccceeeccCCcHHHHHHHHHHHHhhcCC------C---CHH-HHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcc--
Q 001803 279 PHYEDFFVSSSDSYQSKALKLEILSSIVTE------S---SIS-SVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK-- 346 (1011)
Q Consensus 279 ~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane------~---Nv~-~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~-- 346 (1011)
|+...-|-..+++. -+.+++.|-..++|. + |+. +.+.|-..++.+.-..++..+++-+.+++++-.+
T Consensus 684 ~~~eQ~~n~~t~e~-~~Ll~~~I~~~lvn~ptt~rsd~~~s~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~ 762 (982)
T KOG4653|consen 684 PLKEQLFNLGTREI-NPLLQQSIDSLLVNIPTTRRSDRRYSVDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKAT 762 (982)
T ss_pred chHHHHhhcccccc-chHHhccchhhhccCCCCccccccccccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhh
Confidence 34444444444442 233335666666662 1 222 3577888888888888999999999999985432
Q ss_pred --cHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhcc----------Cchh
Q 001803 347 --MANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSI----------KVPE 414 (1011)
Q Consensus 347 --~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I----------~~p~ 414 (1011)
.-..+++..++.|+. .+.+|---+|..+..|-..||+ .++..|.+..++- .+.+
T Consensus 763 ~~~~ekvl~i~ld~Lkd-----------edsyvyLnaI~gv~~Lcevy~e---~il~dL~e~Y~s~k~k~~~d~~lkVGE 828 (982)
T KOG4653|consen 763 LIQGEKVLAIALDTLKD-----------EDSYVYLNAIRGVVSLCEVYPE---DILPDLSEEYLSEKKKLQTDYRLKVGE 828 (982)
T ss_pred hhhHHHHHHHHHHHhcc-----------cCceeeHHHHHHHHHHHHhcch---hhHHHHHHHHHhcccCCCccceehHHH
Confidence 235678888888873 3445433344333344445886 5677777755432 2223
Q ss_pred HHHHhhhhhccccCCCCCccccHHHHHHHHHHhh----ccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHc
Q 001803 415 ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCF----KSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAE 490 (1011)
Q Consensus 415 ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F----~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~ 490 (1011)
|.-.++-=.||-+ ..++..++..| .+-+.+-|+.-+..+.-+........++.+..+++-|+.+++
T Consensus 829 ai~k~~qa~Gel~----------~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~ 898 (982)
T KOG4653|consen 829 AILKVAQALGELV----------FKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLET 898 (982)
T ss_pred HHHHHHHHhccHH----------HHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHc
Confidence 3333333344432 22222333333 222345677777666666555443334467788999999999
Q ss_pred cCCChHHHhHHHHHHHHccCC
Q 001803 491 CDLNYDVRDRARFFKKLFSHN 511 (1011)
Q Consensus 491 ~D~n~DVRDRAr~y~~LL~~~ 511 (1011)
-|-.+=+|--|.-..+.+-.+
T Consensus 899 ~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 899 TDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred cCCchhhHHHHHHHHHHHHhc
Confidence 999999998887666665443
No 143
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=51.27 E-value=4e+02 Score=29.90 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=43.9
Q ss_pred ceeeccCCcHH--HHHHHHHHHHhhcC-CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcc
Q 001803 283 DFFVSSSDSYQ--SKALKLEILSSIVT-ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (1011)
Q Consensus 283 ~Ffv~~~Dp~~--IK~lKLeIL~~Lan-e~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~ 346 (1011)
.|-...+||.- -..+|..+...|+. +.=.+..+.=|.+=+.+.....+.++.+++..|+.+|+.
T Consensus 175 ~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 175 TFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred eeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 34445688843 34667777777775 333345555555555566777899999999999999975
No 144
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.82 E-value=55 Score=40.14 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=54.2
Q ss_pred CCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccCh
Q 001803 373 GEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEA 452 (1011)
Q Consensus 373 ~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~ 452 (1011)
+++.|-.-+|+.|--+.-.+|+..- ..++.|-+-..+..|++.+..+|=.|.- .-.+.+-|+|..+.. +-.
T Consensus 564 ~nDDVrRAAViAlGfvc~~D~~~lv----~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~~---D~~ 634 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCDDRDLLV----GTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALMY---DTN 634 (926)
T ss_pred CchHHHHHHHHheeeeEecCcchhh----HHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHhh---CcH
Confidence 3344445555555444445665433 3334444445688999999999998852 123457788887763 344
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 001803 453 VETKLQILNTTIKVLLCA 470 (1011)
Q Consensus 453 ~~VKlqILta~aKL~~~~ 470 (1011)
+.||...+.+.+-+.+..
T Consensus 635 dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 635 DFVRQSAMIAVGMILMQC 652 (926)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 678877777666665554
No 145
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.81 E-value=2.7e+02 Score=35.44 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHh
Q 001803 440 VLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRD 499 (1011)
Q Consensus 440 vLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRD 499 (1011)
+..++..+..+-.+.||.|.+-+..|+-= .|.+..-.+..++..++ .+|.+++||-
T Consensus 127 l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~dee~~v~n~l~~li---qnDpS~EVRR 182 (892)
T KOG2025|consen 127 LNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKDEECPVVNLLKDLI---QNDPSDEVRR 182 (892)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHH---hcCCcHHHHH
Confidence 34455667778888999999999998752 23222223445555444 4899999984
No 146
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian). Lilliputian is a Drosophila AF4 protein homologue which contains an AT-hook domain. It represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila []. These proteins have been linked to Homo sapiens diseases such as acute lymphoblastic leukemia and mental retardation [].
Probab=49.80 E-value=19 Score=48.00 Aligned_cols=14 Identities=43% Similarity=0.937 Sum_probs=7.6
Q ss_pred hCCCcccchHHHHH
Q 001803 77 ICPNNFTLIGRNYR 90 (1011)
Q Consensus 77 IcP~r~dLihk~yr 90 (1011)
.+|..+.|+..-|.
T Consensus 26 ~f~~~~pLF~ePYK 39 (1191)
T PF05110_consen 26 AFPENFPLFGEPYK 39 (1191)
T ss_pred ccCcCCccccCccc
Confidence 34555556555554
No 147
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=49.66 E-value=42 Score=34.49 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=62.2
Q ss_pred CCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHH------HHHHHHHhC
Q 001803 23 DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGR------NYRNLCQIL 96 (1011)
Q Consensus 23 D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk------~yrkLc~~L 96 (1011)
...+-||-.|..++.|+++..++.-.+.+.+.+..++.+.+..-...|+.++..+.|--+++-.. ....|..+.
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~ 95 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLA 95 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHH
Confidence 56788999999999999876665566778888888887666666777888888888876543211 112222222
Q ss_pred C--CCChhhHHHHHHHHHHhh
Q 001803 97 P--DVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 97 ~--d~dEWgQv~iL~lL~rY~ 115 (1011)
. .-++=-|..++++|..=+
T Consensus 96 ~~~~~~~~~~~~~lell~aAc 116 (157)
T PF11701_consen 96 SRKSKDRKVQKAALELLSAAC 116 (157)
T ss_dssp H-CTS-HHHHHHHHHHHHHHT
T ss_pred hcccCCHHHHHHHHHHHHHHH
Confidence 2 244445777777776544
No 148
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=49.37 E-value=1.1e+02 Score=34.23 Aligned_cols=80 Identities=16% Similarity=0.253 Sum_probs=53.6
Q ss_pred HHHHHHhhccCCh-hHH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhC
Q 001803 315 FKEFQDYIRDPDR-RFA-ADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1011)
Q Consensus 315 L~EL~~Yv~~~D~-efv-~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~ 392 (1011)
+..|+.|+.+.+. +|+ ..+++|++.++..-|...+.|++++..++... ++++..++|-.++ ..++..+
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~--------l~~~~~~~~~~Lv--~~~~dL~ 182 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYF--------LERNPSFLWGSLV--ADICDLY 182 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--------hccCchHHHHHHH--HHHHhcC
Confidence 4456667777655 344 46779999999999999999999999999742 1334445665543 4566667
Q ss_pred CcchHHHHHHHH
Q 001803 393 PSCHEKVIIQLF 404 (1011)
Q Consensus 393 P~~~~~ii~~L~ 404 (1011)
|..-...|+++.
T Consensus 183 ~~EL~~~I~~~f 194 (249)
T PF06685_consen 183 PEELLPEIRKAF 194 (249)
T ss_pred HHHhHHHHHHHH
Confidence 765444444443
No 149
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=49.13 E-value=1e+02 Score=34.59 Aligned_cols=73 Identities=22% Similarity=0.116 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhh---------HHHHHHHHHHHhc--------CCChhHHHH
Q 001803 7 HVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEI---------TSAIEEIVGILLN--------DRSPGVVGA 69 (1011)
Q Consensus 7 p~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~---------~~~L~eil~~LL~--------D~dp~Vvgs 69 (1011)
..-.|.++++|-..+.|.+|.+|..++.++..+....|... .+.+.+.+..+|. |.+..++..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ 193 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA 193 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence 45578899999999999999999999999999988655333 3446666777776 778888888
Q ss_pred HHHHHHHhCC
Q 001803 70 AAAAFASICP 79 (1011)
Q Consensus 70 Av~Af~EIcP 79 (1011)
|.-++..+++
T Consensus 194 ay~~L~~L~~ 203 (282)
T PF10521_consen 194 AYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHH
Confidence 8888777743
No 150
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=49.10 E-value=3.8e+02 Score=35.02 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=50.8
Q ss_pred hhcCCCChhhHHHHHHHHHHHhccC-hhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 19 KCARDPSVFVRKCAANALPKLHELR-QEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 19 k~l~D~SPYVRKtAA~AI~Kly~ld-pe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
+++.|.+--+|+.+|+||.-+-..| | ++-+++..++.++|.+.|..-+-+|+.++.|+.
T Consensus 97 ~~l~~sn~ki~~~vay~is~Ia~~D~P-d~WpElv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 97 NLLDDSNSKIRSAVAYAISSIAAVDYP-DEWPELVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred hhhhccccccchHHHHHHHHHHhccCc-hhhHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 4555999999999999999998874 7 778889999999999999888889998887764
No 151
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.78 E-value=9.4e+02 Score=33.55 Aligned_cols=148 Identities=15% Similarity=0.199 Sum_probs=87.9
Q ss_pred CCChhHHHHHHhhhhhccCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHH-HhccCCcchHHHHHHHHHHHHhCCcc
Q 001803 201 KTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PKEDVKRIVKPLLF-ILRSSGASKYVVLCNIQVFAKALPHL 276 (1011)
Q Consensus 201 ~~D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~~~l~~i~~pLv~-LL~s~~eiqYvvL~~I~~i~~~~p~l 276 (1011)
+|-|-...||+.+.|-+.-||++|--+.+...-|++ .++...+++.-++. ++......+-++...+..|....+++
T Consensus 1270 emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~ 1349 (1702)
T KOG0915|consen 1270 EMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEM 1349 (1702)
T ss_pred ccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHH
Confidence 466677899999999999999999999888877764 34556666666654 44433333345555554477777777
Q ss_pred ccccccc-----eeeccCCcHHHHHHHHHHHHhhcCC--CCHH----HHHHHHHHhhccCC-hhHHHHHHHHHHHHHhhC
Q 001803 277 FVPHYED-----FFVSSSDSYQSKALKLEILSSIVTE--SSIS----SVFKEFQDYIRDPD-RRFAADTVAAIGLCARKL 344 (1011)
Q Consensus 277 F~~~l~~-----Ffv~~~Dp~~IK~lKLeIL~~Lane--~Nv~----~IL~EL~~Yv~~~D-~efv~~aI~AIG~~A~k~ 344 (1011)
|..|... |+.+..+......+==|+...++.- ..+. .||.-+-.-+.+.+ -.++..++++|...|...
T Consensus 1350 Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1350 LKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence 7766443 3333333233444444455544432 2332 23333333333333 256667788888888877
Q ss_pred cccH
Q 001803 345 PKMA 348 (1011)
Q Consensus 345 p~~a 348 (1011)
...+
T Consensus 1430 sss~ 1433 (1702)
T KOG0915|consen 1430 SSSA 1433 (1702)
T ss_pred cccC
Confidence 6544
No 152
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=48.25 E-value=1.1e+02 Score=35.88 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=9.3
Q ss_pred HhccCCcchHHHHHHHHHH
Q 001803 251 ILRSSGASKYVVLCNIQVF 269 (1011)
Q Consensus 251 LL~s~~eiqYvvL~~I~~i 269 (1011)
+|..+++++-.+++.+..+
T Consensus 34 lL~~~~~vraa~yRilRy~ 52 (371)
T PF14664_consen 34 LLSDSKEVRAAGYRILRYL 52 (371)
T ss_pred HCCCcHHHHHHHHHHHHHH
Confidence 4444455555555544333
No 153
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=47.87 E-value=17 Score=45.57 Aligned_cols=11 Identities=9% Similarity=0.447 Sum_probs=5.2
Q ss_pred HHHHHHHHhcC
Q 001803 51 IEEIVGILLND 61 (1011)
Q Consensus 51 L~eil~~LL~D 61 (1011)
|-+.++..+.|
T Consensus 180 LsD~~e~~I~~ 190 (960)
T KOG1189|consen 180 LSDLMESAIED 190 (960)
T ss_pred HHHHHHHHhhc
Confidence 44444444444
No 154
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=47.67 E-value=1.2e+02 Score=30.84 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=49.2
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhccCCcchHHHHHHHHHHHHhCCccccccc
Q 001803 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1011)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~-LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l 281 (1011)
++-+++.+.+..-+=+.+++.+-.+-. . +..-+.++++|.+ |-..++++++.+|.-+..++..+...|...+
T Consensus 8 ~I~kATs~~l~~~dw~~ileicD~In~-~-~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 80 (142)
T cd03569 8 LIEKATSELLGEPDLASILEICDMIRS-K-DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEV 80 (142)
T ss_pred HHHHHcCcccCccCHHHHHHHHHHHhC-C-CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 455666677777777777777766422 1 1223456667764 4456799999999999999998887776554
No 155
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.32 E-value=91 Score=33.24 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=56.1
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc-Chhh---hHHHHHHHHHHHhcCCChhHHHHHHHHHHHh---CCCc
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASI---CPNN 81 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l-dpe~---~~~~L~eil~~LL~D~dp~VvgsAv~Af~EI---cP~r 81 (1011)
.+|+.+..+++ -.+|| |=-|..++-.+... .++. -.++|+.-|+.-|+-+++.|+.+++.++..+ .+--
T Consensus 39 ~Lpif~dGL~E---t~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 39 YLPIFFDGLRE---TEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred HHHHHHhhhhc---cCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 34444444433 34555 34555566666555 4321 4577888889999999999999999999988 4433
Q ss_pred ccchHHHHHHHHHhC
Q 001803 82 FTLIGRNYRNLCQIL 96 (1011)
Q Consensus 82 ~dLihk~yrkLc~~L 96 (1011)
-.-+-++||+|+..|
T Consensus 115 G~aLvPyyrqLLp~l 129 (183)
T PF10274_consen 115 GEALVPYYRQLLPVL 129 (183)
T ss_pred hHHHHHHHHHHHHHH
Confidence 355778999986544
No 156
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=47.13 E-value=60 Score=34.30 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=65.9
Q ss_pred CCCeeEEEEecC-----CCCCCCCCeEEEEEEEEeCCCCce---eeeEeecccc----chhhhhhhhhhhccccc-----
Q 001803 739 GNGLKVYYSFSS-----EASTISPQLVCLETFFENCSSETM---SEVTLVDEES----HKALDLADLTLATTASS----- 801 (1011)
Q Consensus 739 g~GL~v~Y~F~r-----~p~~~~~~mv~v~l~f~N~s~~~i---~~i~i~~~~~----~~~~~g~~~~~~~~~~~----- 801 (1011)
..=|.|.+.|.- +-.++.|+ |.|+|+|+.+| .+|...=..+ .|-+.|+..+..+..|+
T Consensus 33 ~~~ldv~v~~~gf~~GD~NYPI~Pk-----l~iTNns~~~iPGGt~~~FD~ptSa~~~~kdqSG~g~~vi~sght~~g~N 107 (180)
T PF06483_consen 33 TEALDVSVSFTGFKLGDSNYPINPK-----LTITNNSGQTIPGGTEFEFDYPTSAPDNAKDQSGFGLKVISSGHTAAGNN 107 (180)
T ss_pred CceEEEEEEeCCcccCCCCCCcCCc-----EEEEcCCCcccCCccEEEEccccCCccccccccCCcEEEEecCCcccCCc
Confidence 344666666663 34566765 57999999999 3444321111 12233433222221111
Q ss_pred ccC-CCCCCCc-ccCCCCcccCCCCeeEEEEEEecCCCCccceEEEEEcCCeeeeEEe
Q 001803 802 LTS-QSDLPTL-VPMEEITSLEPGQTMKRILEVRFHHHLLPLKLALHCNGKKLPVKLR 857 (1011)
Q Consensus 802 ~~~-~~~~~~~-~~f~~I~~L~pg~s~~~~lgidF~~~~~~~~~~l~~~~~~~~v~i~ 857 (1011)
--+ ..+..++ ...+.-.+|+||++++..|=.--+=+. |.+|.+..++..|-.+-.
T Consensus 108 iGGL~gdfHrvs~tlp~wqslapG~s~~~~~~YyLPiSg-PsN~tv~~~g~~Yal~~d 164 (180)
T PF06483_consen 108 IGGLKGDFHRVSFTLPAWQSLAPGASVELDMVYYLPISG-PSNFTVNIGGKTYALKFD 164 (180)
T ss_pred ccccCCceEEEEEECCCccccCCCCEEEEeEEEEeccCC-CceEEEEECCEEEEEecc
Confidence 000 0111111 013566799999999999888887777 999999999999866543
No 157
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.06 E-value=1e+03 Score=33.33 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=54.9
Q ss_pred ChhhHHHHHHHHHHHhccChhh---hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHhCC---C
Q 001803 25 SVFVRKCAANALPKLHELRQEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILP---D 98 (1011)
Q Consensus 25 SPYVRKtAA~AI~Kly~ldpe~---~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L~---d 98 (1011)
.+--||-||++..++-...-+. ...+|++.|.+-=-|.++.|-+|-..-..-+.+|+-..+-++|..++.-|. .
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence 4556999999999988754322 334556555555559999998777777778889976666666666555442 2
Q ss_pred CChhh
Q 001803 99 VEEWG 103 (1011)
Q Consensus 99 ~dEWg 103 (1011)
..||-
T Consensus 1050 ~kewR 1054 (1702)
T KOG0915|consen 1050 SKEWR 1054 (1702)
T ss_pred chhHH
Confidence 78997
No 158
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=45.37 E-value=38 Score=35.99 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=43.0
Q ss_pred cchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHh
Q 001803 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL 59 (1011)
Q Consensus 5 RVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL 59 (1011)
++--++|-++.+||+++..++|-|.+.+..++.+|-...+ .--+.|...+.+||
T Consensus 73 kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~-~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 73 KILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD-MVGEALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 4445678889999999999999999999999999955554 44466777777664
No 159
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=45.26 E-value=67 Score=42.09 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=61.5
Q ss_pred cchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHhCCCcc
Q 001803 5 RLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDR-SPGVVGAAAAAFASICPNNF 82 (1011)
Q Consensus 5 RVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~-dp~VvgsAv~Af~EIcP~r~ 82 (1011)
-||+|++.++.-+-.+++|..-.||=.||-++.|+..-.|-+..++.++-+-.+++-- ++.+--.|..||.|+.-..+
T Consensus 334 dv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl 412 (1133)
T KOG1943|consen 334 DVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL 412 (1133)
T ss_pred ccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC
Confidence 3899999999999999999999999999999999999888555555443333366633 36777788899999864443
No 160
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=45.19 E-value=28 Score=25.30 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcC
Q 001803 26 VFVRKCAANALPKLHELRQEEITSAIEEIVGILLND 61 (1011)
Q Consensus 26 PYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D 61 (1011)
+.||+.||.++.++ -+| .-++.|..+|+|
T Consensus 1 ~~vR~~aa~aLg~~--~~~-----~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQL--GDE-----EAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHc--CCH-----hHHHHHHHHhcC
Confidence 47999999999987 233 223445556665
No 161
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=44.57 E-value=8.8e+02 Score=31.98 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=52.6
Q ss_pred cChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc--ccchHHHHHHHHHhCCCCChhhHHHHHHHHHHhh
Q 001803 42 LRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN--FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 42 ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r--~dLihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
..|.-....+...+..+..|..|.|..+|+.+|+-.|... ..+..+..+-|..+..+..+=.-..+|+.|..-+
T Consensus 483 ~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv 558 (1005)
T KOG2274|consen 483 INPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVV 558 (1005)
T ss_pred cchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHh
Confidence 3442233445556666777888888888999998888433 3456667888888888887777777888887665
No 162
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=44.09 E-value=5.5e+02 Score=29.45 Aligned_cols=89 Identities=16% Similarity=0.062 Sum_probs=56.8
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhcc--Chhh---hHHHHHHHHHHHhcCCC--hhHHHHHHHHHHHhC----CCcc
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHEL--RQEE---ITSAIEEIVGILLNDRS--PGVVGAAAAAFASIC----PNNF 82 (1011)
Q Consensus 14 ~~aIkk~l~D~SPYVRKtAA~AI~Kly~l--dpe~---~~~~L~eil~~LL~D~d--p~VvgsAv~Af~EIc----P~r~ 82 (1011)
+...-..+.|++.-.|-.|..+|.+++.. -++. ....|.+.+.+.++-.. -.++++-+.++.-|. .+.-
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 34455667889999999999999998853 3422 45667777777776333 345554555555444 2333
Q ss_pred cchHHHHHHHHHhCCCCChh
Q 001803 83 TLIGRNYRNLCQILPDVEEW 102 (1011)
Q Consensus 83 dLihk~yrkLc~~L~d~dEW 102 (1011)
+++......|.+++.|-..=
T Consensus 125 ei~~~~~~~L~~~l~d~s~~ 144 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSAS 144 (309)
T ss_pred HHHHHHHHHHHHHHhCCccc
Confidence 45555666777777776443
No 163
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=43.27 E-value=24 Score=44.93 Aligned_cols=13 Identities=15% Similarity=-0.228 Sum_probs=6.0
Q ss_pred CcchHHHHHHHHH
Q 001803 256 GASKYVVLCNIQV 268 (1011)
Q Consensus 256 ~eiqYvvL~~I~~ 268 (1011)
|+++--+|..|+.
T Consensus 676 pei~~~AL~vIin 688 (1516)
T KOG1832|consen 676 PEIIQPALNVIIN 688 (1516)
T ss_pred HHHHHHHHhhhhe
Confidence 4444444444443
No 164
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=42.90 E-value=41 Score=33.38 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=49.2
Q ss_pred CcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHH------HHHHhhccChHHHHHHHHHHHHHH
Q 001803 393 PSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLK------YLAWCFKSEAVETKLQILNTTIKV 466 (1011)
Q Consensus 393 P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR------~l~k~F~~E~~~VKlqILta~aKL 466 (1011)
.+...++++.|++.|+.-.+|...|..+.=||||+.. .|.. -.+++ .+..-...+.++||.+.|.+.-|+
T Consensus 38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~---~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRH---YPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH----GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHH---ChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3444578889999987777888888888999999853 3432 12221 122234568899999999999988
Q ss_pred hhh
Q 001803 467 LLC 469 (1011)
Q Consensus 467 ~~~ 469 (1011)
.+.
T Consensus 114 m~~ 116 (119)
T PF11698_consen 114 MVN 116 (119)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 165
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=42.82 E-value=65 Score=32.32 Aligned_cols=73 Identities=15% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhccCCcchHHHHHHHHHHHHhCCccccccc
Q 001803 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1011)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv-~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l 281 (1011)
.++-+++.+.+.+-+-+.++..+-..-.- ....+.+++.|. +|-..+|++++.+|.-+..++...+..|...+
T Consensus 8 ~li~kATs~~~~~~Dw~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev 81 (140)
T PF00790_consen 8 ELIEKATSESLPSPDWSLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREV 81 (140)
T ss_dssp HHHHHHT-TTSSS--HHHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCcCCCCCCHHHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46667777877777778888777653322 233455666665 45567899999999999999998877776554
No 166
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=42.00 E-value=5.1e+02 Score=30.57 Aligned_cols=220 Identities=15% Similarity=0.203 Sum_probs=115.3
Q ss_pred hHHHHHHhhhhhccCCChHHHHHHHHHHHhc-CCHHHHHHHHH----HH-HH-HhccC-Cc-chHHHHHHHHHHHHhC--
Q 001803 205 DVKLLLQCTSPLLWSHNSAVVLAAAGVHWIM-SPKEDVKRIVK----PL-LF-ILRSS-GA-SKYVVLCNIQVFAKAL-- 273 (1011)
Q Consensus 205 Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~~l-ap~~~l~~i~~----pL-v~-LL~s~-~e-iqYvvL~~I~~i~~~~-- 273 (1011)
+...+...+.+.+-+.+.-|+.|+-|+.-|+ .....++.+.+ .+ ++ |-+.. .+ =|--+|+-+..+....
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 3455666666655555588999998887554 33333444332 11 12 21111 11 1334455454444431
Q ss_pred CccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHH--
Q 001803 274 PHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC-- 351 (1011)
Q Consensus 274 p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~c-- 351 (1011)
++.| | ..|++-+-.-+.+.++.++..++..+..+|...|+..-+|
T Consensus 102 ~~~~-------------~--------------------~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG 148 (371)
T PF14664_consen 102 PKEI-------------P--------------------RGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGG 148 (371)
T ss_pred cccC-------------C--------------------HHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCC
Confidence 1111 1 2345555555555777888888888888888888876555
Q ss_pred HHHHHHHHHhhhccccccCCCCCCcchhhHHH-HHHHHHhhCCcchHHH-----HHHHHHhhhcc-----C-------ch
Q 001803 352 VEGLLALIRQELLTSDIESGNGEADVLIQSII-SIKSIIKQDPSCHEKV-----IIQLFRSLDSI-----K-------VP 413 (1011)
Q Consensus 352 l~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~-vIk~Llq~~P~~~~~i-----i~~L~~~Ld~I-----~-------~p 413 (1011)
+.+|++.+-. + .+-+.|++. +|-.++ ..|..+..+ +..+..-+-+. . -.
T Consensus 149 ~~~L~~~l~d-----------~-~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~ 215 (371)
T PF14664_consen 149 IRVLLRALID-----------G-SFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQ 215 (371)
T ss_pred HHHHHHHHHh-----------c-cHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHH
Confidence 5566655541 1 112555443 344444 334332211 22233222222 1 11
Q ss_pred hHHHHhhhhhccccCCCCC-ccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCC
Q 001803 414 EARVMIIWMVGEYSSVGVK-IPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (1011)
Q Consensus 414 ~ArAsIiWLIGEY~~~~e~-ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~ 472 (1011)
.++.+|+-++--+..+.-. .++. .-+|-++..+.-...++|-.||.++..++-..+.
T Consensus 216 ~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p 273 (371)
T PF14664_consen 216 ASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPP 273 (371)
T ss_pred HHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCC
Confidence 2344555555555432110 1111 3467777777777888999999999998865543
No 167
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=41.42 E-value=1.7e+02 Score=29.61 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=51.0
Q ss_pred HHHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-Hhcc-CCcchHHHHHHHHHHHHhCCccccccc
Q 001803 207 KLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLF-ILRS-SGASKYVVLCNIQVFAKALPHLFVPHY 281 (1011)
Q Consensus 207 ~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~-LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l 281 (1011)
.++-+++.+.+..-|-+.+++.+-.+-. +...-+.++++|.. |..+ ++++++.+|.-+..++..+...|..++
T Consensus 4 ~~IekATse~l~~~dw~~ileicD~In~--~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~ei 78 (141)
T cd03565 4 QLIEKATDGSLQSEDWGLNMEICDIINE--TEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLV 78 (141)
T ss_pred HHHHHHcCcCCCCcCHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 3566777888888888888888876532 22234456666654 4333 577889899999999999987776543
No 168
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=41.02 E-value=35 Score=28.74 Aligned_cols=31 Identities=10% Similarity=0.034 Sum_probs=27.0
Q ss_pred CeEEEEEEEEeCCCCceeeeEeeccccchhhhhhh
Q 001803 758 QLVCLETFFENCSSETMSEVTLVDEESHKALDLAD 792 (1011)
Q Consensus 758 ~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~ 792 (1011)
.-|...|+++|.++.+..+|.|.+. +|+|+.
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~----lP~g~~ 42 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDI----LPSGTT 42 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEc----CCCCCE
Confidence 4567889999999999999999986 888873
No 169
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=40.41 E-value=3.2e+02 Score=35.62 Aligned_cols=71 Identities=21% Similarity=0.085 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCh---hh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ---EE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldp---e~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
.|.+=+...+...+.|+.+==||.|+-.+.+...-.. .. ..+.+.-.+...+.|.+..|++.|+.-+..||
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia 323 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIA 323 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 4556667788899999999999999999999876433 11 22334445566678999999999999999997
No 170
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=40.34 E-value=4.6e+02 Score=33.54 Aligned_cols=167 Identities=12% Similarity=0.115 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhhcCCCCH----HHHHHHHHHhhccCChhHHH-HHH-HHHHHHHhhCcccHHHHHHHHHHHHHhhhccc
Q 001803 293 QSKALKLEILSSIVTESSI----SSVFKEFQDYIRDPDRRFAA-DTV-AAIGLCARKLPKMANTCVEGLLALIRQELLTS 366 (1011)
Q Consensus 293 ~IK~lKLeIL~~Lane~Nv----~~IL~EL~~Yv~~~D~efv~-~aI-~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~ 366 (1011)
++.-...|++-.+.++=|- +.|+++|..-.-. +++... +.| .-+-++..-.|...-+-++.+..||..+
T Consensus 237 hls~~~aeli~~isde~n~~~l~edi~~~l~~l~fn-~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdse---- 311 (1128)
T COG5098 237 HLSGLIAELIPSISDELNRCALKEDIPVLLKNLSFN-LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSE---- 311 (1128)
T ss_pred HHHHHHHHHHHHhHHHhhhhhhhcccHHHHhhceee-cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhccc----
Confidence 4556667777777766665 3466666654321 122211 222 3344567777887777778888888643
Q ss_pred cccCCCCCCcchhhHHHHHH-HHHh---hCCcc---hHHHHHHHHHhhh-cc--CchhHHHHhhhhhccccCCCCCcccc
Q 001803 367 DIESGNGEADVLIQSIISIK-SIIK---QDPSC---HEKVIIQLFRSLD-SI--KVPEARVMIIWMVGEYSSVGVKIPRM 436 (1011)
Q Consensus 367 ~~~~~~~~~~vV~E~V~vIk-~Llq---~~P~~---~~~ii~~L~~~Ld-~I--~~p~ArAsIiWLIGEY~~~~e~ip~i 436 (1011)
.+.+.-+++-++ +++. ++|+. +...+..|+..+. .+ ..|-.|..++-.+-.-+++-.+.|.-
T Consensus 312 --------s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~ 383 (1128)
T COG5098 312 --------SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR 383 (1128)
T ss_pred --------chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch
Confidence 233444443222 3332 23322 2223444444332 22 24777777777766666553344555
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcCC
Q 001803 437 LTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKG 472 (1011)
Q Consensus 437 a~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p~ 472 (1011)
-.++.|....+..+-+..||--.+.++.||+.+.|-
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 567777777788888999999999999999999883
No 171
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=40.08 E-value=2.5e+02 Score=35.71 Aligned_cols=124 Identities=19% Similarity=0.339 Sum_probs=78.8
Q ss_pred cccccceeeccCCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHH-----H
Q 001803 278 VPHYEDFFVSSSDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTC-----V 352 (1011)
Q Consensus 278 ~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~c-----l 352 (1011)
..++-++|...+- ...++||+.+ -+-+-+.++..|.+|+.. ...+..++.-+|.+..+-|.+.-.+ +
T Consensus 41 ~~~l~~y~~~t~s-----~~~~~il~~~-~~P~~K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf 112 (668)
T PF04388_consen 41 VNGLVDYYLSTNS-----QRALEILVGV-QEPHDKHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLF 112 (668)
T ss_pred HHHHHHHHhhcCc-----HHHHHHHHhc-CCccHHHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhH
Confidence 3444445554432 3467788864 455668889999999884 4688889999999999998877655 4
Q ss_pred HHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhcccc
Q 001803 353 EGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYS 427 (1011)
Q Consensus 353 ~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~ 427 (1011)
..|+++|.. +.+..+|.-++.+|.-||=.-|..-...+..|.. --+|.+ .|-....+
T Consensus 113 ~~LLk~L~~----------D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~-------If~Rl~-~W~~~~~~ 169 (668)
T PF04388_consen 113 KSLLKCLQF----------DTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFN-------IFGRLL-SWERKNPG 169 (668)
T ss_pred HHHHHHHhh----------cccHHHHHHHHHHHHHHhccccchhhHHHHHHHH-------HHHHHH-HcccCCCC
Confidence 466666664 2344566677778888776666543333333332 334443 67665433
No 172
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=39.90 E-value=23 Score=45.51 Aligned_cols=27 Identities=15% Similarity=-0.042 Sum_probs=11.3
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHHHhc
Q 001803 15 VAVGKCARDPSVFVRKCAANALPKLHE 41 (1011)
Q Consensus 15 ~aIkk~l~D~SPYVRKtAA~AI~Kly~ 41 (1011)
.-+-+++..+..--|=--++|+.-+-+
T Consensus 6 ~RLirGl~S~r~~aR~Gfs~~Lte~l~ 32 (784)
T PF04931_consen 6 KRLIRGLASSRESARLGFSLALTELLS 32 (784)
T ss_pred HHHhcccCCChHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443
No 173
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=39.64 E-value=3e+02 Score=33.88 Aligned_cols=115 Identities=16% Similarity=0.205 Sum_probs=78.6
Q ss_pred HHHHHHhc-cCCcchHHHHHHHHHHHHh-------------CC-------------ccccccccceee--------ccCC
Q 001803 246 KPLLFILR-SSGASKYVVLCNIQVFAKA-------------LP-------------HLFVPHYEDFFV--------SSSD 290 (1011)
Q Consensus 246 ~pLv~LL~-s~~eiqYvvL~~I~~i~~~-------------~p-------------~lF~~~l~~Ffv--------~~~D 290 (1011)
..|+.+.. .++|+.|-+|.+|--+... .| .+|+.|++.||. ++.|
T Consensus 123 etLls~C~kksrn~a~q~l~~lKDLfi~gllp~rklry~k~q~~lsk~v~~k~l~~~~fesflk~l~fr~levle~ls~d 202 (821)
T COG5593 123 ETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNRKLRYFKNQPGLSKEVQNKYLKQRIFESFLKNLRFRVLEVLEVLSHD 202 (821)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhcccCcchhhHhhhcCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445544 3577778788777554332 12 257777776654 5689
Q ss_pred c-HHHHHHHHHHHHhhcCCC--CHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 291 S-YQSKALKLEILSSIVTES--SISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 291 p-~~IK~lKLeIL~~Lane~--Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
| .|||..-+...|.|.... --..+|+=+..=+.+.+..+..+|--.|-.+-...|.+-.-+++.+.++.-
T Consensus 203 ~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f 275 (821)
T COG5593 203 PIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYF 275 (821)
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHhee
Confidence 8 599999999999887644 334566666666666666777777777888888888888888887777653
No 174
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=39.57 E-value=3.9e+02 Score=26.50 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=47.6
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHHHhCCccccccc
Q 001803 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFIL-RSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1011)
Q Consensus 209 LL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~LL-~s~~eiqYvvL~~I~~i~~~~p~lF~~~l 281 (1011)
+-+++.+.+...+-+.+++.+-.+-.- ...-+.+++.|..-| .+++++++.+|.-+..++...+..|..++
T Consensus 5 I~kATs~~~~~~D~~~il~icd~I~~~--~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i 76 (133)
T cd03561 5 IERATSPSLEEPDWALNLELCDLINLK--PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQV 76 (133)
T ss_pred HHHHcCcccCCccHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 334555556666667777776654322 222345666776444 56799999999999999999887776554
No 175
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=39.34 E-value=1.2e+02 Score=32.17 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHHh-CCccccccccceeecc----------------CCc-HHHHHHHHHHHHhhcCC
Q 001803 258 SKYVVLCNIQVFAKA-LPHLFVPHYEDFFVSS----------------SDS-YQSKALKLEILSSIVTE 308 (1011)
Q Consensus 258 iqYvvL~~I~~i~~~-~p~lF~~~l~~Ffv~~----------------~Dp-~~IK~lKLeIL~~Lane 308 (1011)
+|.-+|..+..|++. .|..|-.|...||.-. .|| .-+|...+..|..|-..
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g 70 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG 70 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc
Confidence 567788889999888 6776666666665433 555 46777777777776544
No 176
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=38.86 E-value=4e+02 Score=29.32 Aligned_cols=111 Identities=13% Similarity=0.190 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCC-ccc-----cccccce---eeccCCcHHHHHHHHHHHHhhcCCCC
Q 001803 241 VKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP-HLF-----VPHYEDF---FVSSSDSYQSKALKLEILSSIVTESS 310 (1011)
Q Consensus 241 l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p-~lF-----~~~l~~F---fv~~~Dp~~IK~lKLeIL~~Lane~N 310 (1011)
+..+...++.++.+ ++.++..++.-+..++...- ..- ...-..| .|..+.| .++..+|+-=.
T Consensus 41 ~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp-~l~~~~Le~Ea------- 112 (239)
T PF11935_consen 41 MNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHP-LLNPQQLEAEA------- 112 (239)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-S-SS-HHHHHHHH-------
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCC-cCCHHHHHHHH-------
Confidence 56677777888776 46699999998887775431 111 0111122 2233334 46666665433
Q ss_pred HHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 311 ISSVFKEFQDYIRDPD--RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 311 v~~IL~EL~~Yv~~~D--~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
..+++.|..++.+.. ..+...++.+++.+|.+=|.....++..|+.+-.
T Consensus 113 -~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 113 -NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILPALLSFNP 163 (239)
T ss_dssp -HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc
Confidence 468888889887655 6788899999999999999999999999998754
No 177
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.67 E-value=2.3e+02 Score=36.66 Aligned_cols=129 Identities=15% Similarity=0.209 Sum_probs=78.6
Q ss_pred hhhccCCChHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHhccCCcchHHHHHHHH---HHHHhCCccccccccceeecc
Q 001803 214 SPLLWSHNSAVVLAAAGVHW--IMSPKEDVKRIVKPLLFILRSSGASKYVVLCNIQ---VFAKALPHLFVPHYEDFFVSS 288 (1011)
Q Consensus 214 ~pLLqS~NsAVVlaaa~l~~--~lap~~~l~~i~~pLv~LL~s~~eiqYvvL~~I~---~i~~~~p~lF~~~l~~Ffv~~ 288 (1011)
.|+.--++.|+ +.-++++= +=++.....++....+..|.. +-.||-|++|. .+|..+|+-.-|.+..||-..
T Consensus 738 d~qvpik~~gL-~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd--edsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~s~ 814 (982)
T KOG4653|consen 738 DDQVPIKGYGL-QMLRHLIEKRKKATLIQGEKVLAIALDTLKD--EDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYLSE 814 (982)
T ss_pred CCcccchHHHH-HHHHHHHHhcchhhhhhHHHHHHHHHHHhcc--cCceeeHHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 44444444444 34456665 333444456677777777764 33466666665 888889987777777777654
Q ss_pred CCcH--HHHHHHHHHHHhhcCCCC------HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCc
Q 001803 289 SDSY--QSKALKLEILSSIVTESS------ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLP 345 (1011)
Q Consensus 289 ~Dp~--~IK~lKLeIL~~Lane~N------v~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p 345 (1011)
++-. .-+.+-=|.+.+++-..+ ...|+.-+..=++++|.+|+.-+...+|.|.+...
T Consensus 815 k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 815 KKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred ccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 3321 122222255555544332 13566666667788888899999999999887654
No 178
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.06 E-value=1e+02 Score=38.91 Aligned_cols=105 Identities=20% Similarity=0.168 Sum_probs=74.7
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc----Chhh-hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCccc
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL----RQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFT 83 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l----dpe~-~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~d 83 (1011)
|++-..--+.+.+.|+-|-||.+|..++.|++.. -|.. .++-+-.++..+-.|....|-.+++-.+.++.-+.
T Consensus 217 i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np-- 294 (1005)
T KOG1949|consen 217 IIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP-- 294 (1005)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--
Confidence 4555566778999999999999999999998764 5522 33334444555556888888888888888886332
Q ss_pred chHHHHHHHHH----hCCCCChhhHHHHHHHHHHhh
Q 001803 84 LIGRNYRNLCQ----ILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 84 Lihk~yrkLc~----~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
+-|+.+..++. .|.|-.|=-.+...+||.+..
T Consensus 295 ~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 295 LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 23444444444 446788888899999998765
No 179
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=37.59 E-value=79 Score=36.93 Aligned_cols=65 Identities=22% Similarity=0.419 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 289 SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPD-RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 289 ~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D-~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
.|+.+....+++++-.--..+.++.|+++|++|-.+.+ .+|+.++++.|.. .+..-|.+-+++++
T Consensus 256 ~~~~~~~~~~~~~i~~~Fs~~tVeeIie~lk~~q~~~~~~ewak~tlk~L~k-------~SPtSLkvT~r~i~ 321 (401)
T KOG1684|consen 256 KDESFSLSLKLDVINKCFSANTVEEIIEALKNYQQSADGSEWAKETLKTLKK-------MSPTSLKVTLRQIR 321 (401)
T ss_pred CCccccchhhHHHHHHhhccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh-------cCCchHHHHHHHHH
Confidence 34445666799999998889999999999999975444 3788888887764 23334555555555
No 180
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.57 E-value=40 Score=32.95 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc
Q 001803 48 TSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1011)
Q Consensus 48 ~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r 81 (1011)
....+++|-+-|.|.++.|+..|+.+|.|.|++.
T Consensus 6 ~~w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 6 EDWGIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 3455676667789999999999999999999987
No 181
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=37.21 E-value=2.4e+02 Score=26.19 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=42.9
Q ss_pred EEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEecC--CC
Q 001803 760 VCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH--HH 837 (1011)
Q Consensus 760 v~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgidF~--~~ 837 (1011)
.+..|+++|.|..+. +.++...+. ...- +.--+.=..|+||++++.. |.|+ +.
T Consensus 22 ~~~~v~l~N~s~~p~-~f~v~~~~~--~~~~--------------------~~v~~~~g~l~PG~~~~~~--V~~~~~~~ 76 (102)
T PF14874_consen 22 YSRTVTLTNTSSIPA-RFRVRQPES--LSSF--------------------FSVEPPSGFLAPGESVELE--VTFSPTKP 76 (102)
T ss_pred EEEEEEEEECCCCCE-EEEEEeCCc--CCCC--------------------EEEECCCCEECCCCEEEEE--EEEEeCCC
Confidence 357889999998885 455533210 0001 1111122469999976554 5555 22
Q ss_pred C--ccceEEEEEcCCeeeeEEec
Q 001803 838 L--LPLKLALHCNGKKLPVKLRP 858 (1011)
Q Consensus 838 ~--~~~~~~l~~~~~~~~v~i~p 858 (1011)
. .-.++.+.+.++.|.|.|+.
T Consensus 77 ~g~~~~~l~i~~e~~~~~i~v~a 99 (102)
T PF14874_consen 77 LGDYEGSLVITTEGGSFEIPVKA 99 (102)
T ss_pred CceEEEEEEEEECCeEEEEEEEE
Confidence 2 34556667788888888775
No 182
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=36.98 E-value=63 Score=36.33 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=16.0
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHH
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKL 39 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kl 39 (1011)
.+.||-+++.|.|+.-|-.+|+++..+
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl 214 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQL 214 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhc
Confidence 445566666666666666666665544
No 183
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=36.79 E-value=1.2e+03 Score=31.47 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=118.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHhhccCChhHHHHHHHHHH-HHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCc
Q 001803 298 KLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIG-LCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (1011)
Q Consensus 298 KLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG-~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~ 376 (1011)
+.+=+..=.-+.|-...+.-+..|+.+-+.-..++.|...+ ....+ -.+..|-+-|++.+-. +.. .+ -.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~d~Fl~~L~~~vsrdliD~~a~ef~~n--lNtKa~RkrLvKal~~------vpr-t~-ld 476 (1128)
T KOG2051|consen 407 QEQDLLESEGDLNTSQVVSNVDCFLLDLPNCVSRDLIDQAAIEFCSN--LNTKANRKRLVKALFV------VPR-TR-LD 476 (1128)
T ss_pred hHHHHhhhhhhcchhhHHHHHHHHHccCcchHHHHHHHHHHHHHHHH--hccHHHHHHHHHhhhc------ccc-hh-hh
Confidence 33334443444555667777777877766666666663222 22222 2333444555555421 000 00 01
Q ss_pred chhhHHHHHHHHHhhCCcchHHHHHHHHHhhhc------cCchhHHHHhhhhhccccCCCCCcc-ccHHHHHHHHHHhhc
Q 001803 377 VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS------IKVPEARVMIIWMVGEYSSVGVKIP-RMLTTVLKYLAWCFK 449 (1011)
Q Consensus 377 vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~------I~~p~ArAsIiWLIGEY~~~~e~ip-~ia~dvLR~l~k~F~ 449 (1011)
++.-.+..+..|....|+....+|.+|-+-+.. ...-..|-.++-+|||-|...- +| ..+-..|+.++..|.
T Consensus 477 llPyYsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~l-v~~~~if~cLk~ll~dF~ 555 (1128)
T KOG2051|consen 477 LLPYYSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQL-VPKFEIFSCLKMLLNDFT 555 (1128)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCc-cChHHHHHHHHHHHHhcc
Confidence 122122223333444566666666666554432 1233466667889999886532 33 345677899998999
Q ss_pred cChHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccCCCC
Q 001803 450 SEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLC 513 (1011)
Q Consensus 450 ~E~~~VKlqILta~aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~~~~ 513 (1011)
.-..++=+-+|..+.+.+++.|+.. .++..+++.+..+ +.+..-|-|+-+..=..+..+.++
T Consensus 556 ~hnIEm~c~lLE~~GrfLlr~pEt~-lrM~~~Le~i~rk-K~a~~lDsr~~~~iENay~~~~PP 617 (1128)
T KOG2051|consen 556 HHNIEMACVLLESCGRFLLRSPETK-LRMRVFLEQIKRK-KRASALDSRQATLIENAYYLCNPP 617 (1128)
T ss_pred cccHHHHHHHHHhcchhhhcChhHH-HHHHHHHHHHHHH-HHHhhhchHHHHHHHHhHHhccCh
Confidence 8889999999999999999998633 3566777766543 456677788777765555555443
No 184
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.70 E-value=1.2e+02 Score=34.93 Aligned_cols=65 Identities=26% Similarity=0.241 Sum_probs=45.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhccChh----hhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCc
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQE----EITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNN 81 (1011)
Q Consensus 14 ~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe----~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r 81 (1011)
...|-+.+.+.+|-|||.|+.-+.-+--- +- .....+++.+.+|+.|..+ +.-|+.|+.++..+.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~ 73 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE 73 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH
Confidence 34677889999999999998555443322 10 0224566667889999998 677888888886553
No 185
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=36.43 E-value=2.6e+02 Score=28.84 Aligned_cols=43 Identities=16% Similarity=0.325 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHHHHHhCCccccccccce
Q 001803 241 VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDF 284 (1011)
Q Consensus 241 l~~i~~pLv~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~F 284 (1011)
+.+++.+++.++.. ....-.+|..+..+...+|..|.||...+
T Consensus 114 l~~~i~~ll~l~~~-~~~~~~~l~~L~~ll~~~ptt~rp~~~ki 156 (165)
T PF08167_consen 114 LPKFIQSLLQLLQD-SSCPETALDALATLLPHHPTTFRPFANKI 156 (165)
T ss_pred HHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHCCccccchHHHH
Confidence 56677777887765 56677899999999999999999997543
No 186
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=36.09 E-value=1.2e+02 Score=29.19 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=59.4
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhccCCcchHHHHHHHHHHHHhCCccccccccc--ee
Q 001803 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHYED--FF 285 (1011)
Q Consensus 209 LL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv-~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~--Ff 285 (1011)
+-+++.+-++..+...+++.+.+...- +...+.++..|. ||-..++.++|-+|..|..++.....-|..++.. |.
T Consensus 5 v~~AT~~~~~~p~~~~i~~i~d~~~~~--~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~ 82 (115)
T cd00197 5 VEKATSNENMGPDWPLIMEICDLINET--NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFA 82 (115)
T ss_pred HHHHcCCCCCCCCHHHHHHHHHHHHCC--CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHH
Confidence 445555666666777777777665321 234556677775 4444578899999999999998888766654321 11
Q ss_pred --------ecc--CC-cHHHHHHHHHHHHhhc
Q 001803 286 --------VSS--SD-SYQSKALKLEILSSIV 306 (1011)
Q Consensus 286 --------v~~--~D-p~~IK~lKLeIL~~La 306 (1011)
... .| +..||.+.++++...+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 83 VELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 111 12 3567777777766544
No 187
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=35.70 E-value=1.2e+02 Score=30.83 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=62.0
Q ss_pred HHHHHHHhhh--ccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccC-------hHHHHHHHHHHHHHHhhh
Q 001803 399 VIIQLFRSLD--SIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE-------AVETKLQILNTTIKVLLC 469 (1011)
Q Consensus 399 ii~~L~~~Ld--~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E-------~~~VKlqILta~aKL~~~ 469 (1011)
.+.+|++.|+ .+.....+.++.-++++.+=..+ |.| ...++.+.++|..- ......++|+++.+.|-+
T Consensus 7 l~~qLi~sL~~~~~~~~~~~~sL~~i~s~~pYi~d--~~I-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~F~r 83 (135)
T PF13981_consen 7 LAKQLIKSLDQGDVDISNVALSLNDILSKPPYIND--PEI-ASWLQKLCENFFDNFNLQLMNKDKLNQAILNFFIDRFSR 83 (135)
T ss_dssp HHHHHHCCCHTTTTSCHHHHHHHHHHHTSTTTTC---HHH-HHHHHHHHHHHHHHHHHHC---HHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccccchhhHhhHhHHHHHhccCcccCC--HHH-HHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHh
Confidence 4555555552 33333355667778887654322 333 35555555554422 223445899999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 001803 470 AKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (1011)
Q Consensus 470 ~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL 508 (1011)
+|+-+..--+.+.|- +-.|.+..+..++..|+.+|.-.
T Consensus 84 ~pelm~~~N~~FIQ~-i~~~~~~~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 84 QPELMISNNGAFIQL-IAQAMTHGDDEIKQKARDLYKKY 121 (135)
T ss_dssp TTTHHHHTHHHHHHH-HHHHCC-TSCCCHHHHHHHHHHH
T ss_pred CHhHHHHcccHHHHH-HHHHHHhccHHHHHHHHHHHHHH
Confidence 997543222334453 34567777889999998766544
No 188
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=35.11 E-value=1.2e+02 Score=28.90 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=39.0
Q ss_pred CCCeEEEEEEEEeCCCCcee----eeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEE
Q 001803 756 SPQLVCLETFFENCSSETMS----EVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILE 831 (1011)
Q Consensus 756 ~~~mv~v~l~f~N~s~~~i~----~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lg 831 (1011)
.-+.+.|+++++|.+++++. +..+.+. +|-.-.....+. .. .. -.....|.||+++++.|.
T Consensus 34 g~~fv~v~v~v~N~~~~~~~~~~~~f~l~d~------~g~~~~~~~~~~-----~~---~~-~~~~~~i~pG~~~~g~l~ 98 (123)
T PF11611_consen 34 GNKFVVVDVTVKNNGDEPLDFSPSDFKLYDS------DGNKYDPDFSAS-----SN---DN-DLFSETIKPGESVTGKLV 98 (123)
T ss_dssp -SEEEEEEEEEEE-SSS-EEEEGGGEEEE-T------T--B--EEE-CC-----CT---TT-B--EEEE-TT-EEEEEEE
T ss_pred CCEEEEEEEEEEECCCCcEEecccceEEEeC------CCCEEcccccch-----hc---cc-cccccEECCCCEEEEEEE
Confidence 35789999999999999884 2344322 121100000000 00 00 023458999999999999
Q ss_pred EecCCCCccceEEE
Q 001803 832 VRFHHHLLPLKLAL 845 (1011)
Q Consensus 832 idF~~~~~~~~~~l 845 (1011)
.+=....++..|+.
T Consensus 99 F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 99 FEVPKDDKPYTLEY 112 (123)
T ss_dssp EEESTT-GG-EEEE
T ss_pred EEECCCCccEEEEE
Confidence 88888888866665
No 189
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.57 E-value=73 Score=40.07 Aligned_cols=67 Identities=21% Similarity=0.114 Sum_probs=50.2
Q ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHHhcc-ChhhhH---HHHH----HHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 12 LVLVAVGKCARDPSVFVRKCAANALPKLHEL-RQEEIT---SAIE----EIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 12 iv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l-dpe~~~---~~L~----eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
+.-+.|-+++.=++--||-.||+-..-+|-+ ||+.++ +.++ +.+..||.|.-|+|-+-|+--...+.
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~ 248 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKIT 248 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 3345677888999999999999999999987 775322 2222 35788999999999988876655443
No 190
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=34.19 E-value=1.2e+02 Score=30.91 Aligned_cols=72 Identities=15% Similarity=0.098 Sum_probs=53.4
Q ss_pred HHHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHhCCccccccc
Q 001803 208 LLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1011)
Q Consensus 208 lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv~LL~-s~~eiqYvvL~~I~~i~~~~p~lF~~~l 281 (1011)
++-+++.|.+..-|-+.+++.+-.+- -.| ..-+.++.+|.+-|. .++++++.+|.-+-.+++.+...|...+
T Consensus 5 ~iekAT~~~l~~~dw~~ileicD~In-~~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev 77 (139)
T cd03567 5 WLNKATNPSNREEDWEAIQAFCEQIN-KEP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV 77 (139)
T ss_pred HHHHHcCccCCCCCHHHHHHHHHHHH-cCC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 45677888888888888888887753 233 234556777765554 4689999999999999999987776554
No 191
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.93 E-value=59 Score=25.32 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCCChhhHHHHHHHHHHH
Q 001803 13 VLVAVGKCARDPSVFVRKCAANALPKL 39 (1011)
Q Consensus 13 v~~aIkk~l~D~SPYVRKtAA~AI~Kl 39 (1011)
+++.+-+++.+.++-||+.|+-|+..|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 455666777788888888888777654
No 192
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=33.64 E-value=2.3e+02 Score=31.87 Aligned_cols=121 Identities=13% Similarity=0.194 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHhCC----------cccccccccee-ecc--------CCcHHHHHHHH
Q 001803 240 DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALP----------HLFVPHYEDFF-VSS--------SDSYQSKALKL 299 (1011)
Q Consensus 240 ~l~~i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p----------~lF~~~l~~Ff-v~~--------~Dp~~IK~lKL 299 (1011)
.+..++.+++.|+-. .+++|.-++..+..|..+.| +++.-+...++ +++ ++...+-....
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay 195 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAY 195 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHH
Confidence 466788888999975 68999999999998886544 22333332222 222 33455666667
Q ss_pred HHHHhhc----------CCCCHHHHHHH--HHHhhccCC---hhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 300 EILSSIV----------TESSISSVFKE--FQDYIRDPD---RRFAADTVAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 300 eIL~~La----------ne~Nv~~IL~E--L~~Yv~~~D---~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
..|..|+ ...+...+++| |..|....+ ...+....+.+..+...+.-..-.+++-++.+|.
T Consensus 196 ~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 196 PALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7777772 22345667777 344444444 5666666677766666655555556565555554
No 193
>PHA02664 hypothetical protein; Provisional
Probab=33.17 E-value=31 Score=39.15 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCcccHHHHHHHHHHHHH
Q 001803 334 VAAIGLCARKLPKMANTCVEGLLALIR 360 (1011)
Q Consensus 334 I~AIG~~A~k~p~~a~~cl~~LL~LLs 360 (1011)
|..=.+|.+.-|.++.+.+-.|..+-+
T Consensus 242 iddecvcce~rphvartavwtlaeicr 268 (534)
T PHA02664 242 IDDECVCCELRPHVARTAVWTLAEICR 268 (534)
T ss_pred cccceeeecccCCchhhhhhhHHHHhC
Confidence 444456777778887777766766543
No 194
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=32.97 E-value=1.5e+02 Score=31.24 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=61.4
Q ss_pred hhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc---ChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccc
Q 001803 8 VISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL---RQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTL 84 (1011)
Q Consensus 8 ~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l---dpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dL 84 (1011)
.|++--+..|-+++.+.++-||..|..-+.-+-+. .| .+-++.+-.|..|.++.+-.-|...+.+++...-++
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 46667778888999999999999999999888875 56 334555557889999999999999999998655555
Q ss_pred hHHHH
Q 001803 85 IGRNY 89 (1011)
Q Consensus 85 ihk~y 89 (1011)
++..|
T Consensus 80 v~~~~ 84 (187)
T PF12830_consen 80 VESRY 84 (187)
T ss_pred HHHHH
Confidence 55443
No 195
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=32.52 E-value=86 Score=32.58 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=31.4
Q ss_pred hHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCh
Q 001803 10 SPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (1011)
Q Consensus 10 ~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldp 44 (1011)
.+.++..+..++.|.+.||||..+-++.-++..+|
T Consensus 139 ~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 139 FDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 45667778899999999999999999999999998
No 196
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.11 E-value=6e+02 Score=32.98 Aligned_cols=128 Identities=16% Similarity=0.226 Sum_probs=75.6
Q ss_pred HHHHHHHHhc---cCCcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhh-cCCCCHHHHHHHHH
Q 001803 244 IVKPLLFILR---SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSI-VTESSISSVFKEFQ 319 (1011)
Q Consensus 244 i~~pLv~LL~---s~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~L-ane~Nv~~IL~EL~ 319 (1011)
-.+||+.-|. .++|+--++|..+..+....- |=.-..|+...-.+-+.|--.+ -+++||..++.=+.
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd---------~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e 132 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD---------SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE 132 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc---------chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH
Confidence 3468887664 368888888998887765432 0001123333333333333222 36788888776444
Q ss_pred HhhccCChhHHHHHHHHHHHHHhhCcccHHHH-------HHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhC
Q 001803 320 DYIRDPDRRFAADTVAAIGLCARKLPKMANTC-------VEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQD 392 (1011)
Q Consensus 320 ~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~c-------l~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~ 392 (1011)
+| |..++..+|+-|..+-..-|.-...| +..|+++|.. ..+.+-.++|.-|+.+++-+
T Consensus 133 ~~----DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-----------srE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 133 EF----DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-----------SREPIRNEAILLLSELVKDN 197 (970)
T ss_pred hh----chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-----------hhhhhchhHHHHHHHHHccC
Confidence 44 77788888888776655555444333 4566777762 23445566777777777777
Q ss_pred Ccc
Q 001803 393 PSC 395 (1011)
Q Consensus 393 P~~ 395 (1011)
+..
T Consensus 198 ~~I 200 (970)
T KOG0946|consen 198 SSI 200 (970)
T ss_pred chH
Confidence 764
No 197
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=32.01 E-value=2.1e+02 Score=35.88 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=24.6
Q ss_pred HHHHHHHHhcc-CCcchHHHHHHHHHHHHhCCccccccccceeeccC
Q 001803 244 IVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSS 289 (1011)
Q Consensus 244 i~~pLv~LL~s-~~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~ 289 (1011)
++.||+.+|.. +.-|+-.+|-.|.-++..+.. ++.+|++++
T Consensus 420 v~~plvqll~dp~~~i~~~~lgai~NlVmefs~-----~kskfl~~n 461 (678)
T KOG1293|consen 420 VAQPLVQLLMDPEIMIMGITLGAICNLVMEFSN-----LKSKFLRNN 461 (678)
T ss_pred hHHHHHHHhhCcchhHHHHHHHHHHHHHhhccc-----HHHHHHHcC
Confidence 45677777643 234677777777777766653 355554443
No 198
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.76 E-value=1.5e+03 Score=30.85 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=73.3
Q ss_pred hhhHHHHHHHHHhhCCcchH----HHHHHHHHhhhccCchhHHH---Hhhhhhc---cccCCC-CCccccHHHHHHHHHH
Q 001803 378 LIQSIISIKSIIKQDPSCHE----KVIIQLFRSLDSIKVPEARV---MIIWMVG---EYSSVG-VKIPRMLTTVLKYLAW 446 (1011)
Q Consensus 378 V~E~V~vIk~Llq~~P~~~~----~ii~~L~~~Ld~I~~p~ArA---sIiWLIG---EY~~~~-e~ip~ia~dvLR~l~k 446 (1011)
-......++.|++..|.-|. +.|..++-.+... +..+|. ..+..|| -|-+.+ +..+.++.+++-.+..
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isa 792 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISA 792 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHh
Confidence 34455667777777773333 3333333333222 223332 3345555 111111 2234467888888888
Q ss_pred hhccChHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 001803 447 CFKSEAVETKLQILNTTIKVLLCAKGG-DMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 447 ~F~~E~~~VKlqILta~aKL~~~~p~e-~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~ 510 (1011)
.+..+..-++..-|.++.-++...... +.+.+.++++.| .+.--..+.+|+-=|.=+.+.+-.
T Consensus 793 gl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V-~~~L~s~sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 793 GLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV-CLYLASNSREIAKAAIGFIKVLVY 856 (1176)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 988888888877566666666655433 223455556544 333456789999888755555543
No 199
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=31.73 E-value=1.1e+02 Score=32.77 Aligned_cols=62 Identities=18% Similarity=0.083 Sum_probs=43.7
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 14 ~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
...+.+-+.|.+.++||.|+.+-.+.-+. .+.+.+.+++..++.|+.-.|==+.-=+|.|+.
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~---~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~ 178 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEK---TDTDLLFEIILANLGSKEFFIRKAIGWALREYS 178 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 45688899999999999999876653221 234567777788888877666555555666664
No 200
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=31.69 E-value=97 Score=39.95 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=41.0
Q ss_pred CCeEEEEEEEEeCCCCceee---eEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEe
Q 001803 757 PQLVCLETFFENCSSETMSE---VTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 833 (1011)
Q Consensus 757 ~~mv~v~l~f~N~s~~~i~~---i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgid 833 (1011)
...+.|.++++|+++.+=++ +-+..+.. +.. .....+..|..| .|+||++.++.+-|+
T Consensus 666 ~~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-----~~~-------------~P~k~L~gF~Kv-~L~pGes~~V~~~l~ 726 (765)
T PRK15098 666 DGKVTASVTVTNTGKREGATVVQLYLQDVTA-----SMS-------------RPVKELKGFEKI-MLKPGETQTVSFPID 726 (765)
T ss_pred CCeEEEEEEEEECCCCCccEEEEEeccCCCC-----CCC-------------CHHHhccCceeE-eECCCCeEEEEEeec
Confidence 34688999999999754333 34433311 110 112258899999 699999999999988
Q ss_pred cCC
Q 001803 834 FHH 836 (1011)
Q Consensus 834 F~~ 836 (1011)
..+
T Consensus 727 ~~~ 729 (765)
T PRK15098 727 IEA 729 (765)
T ss_pred HHH
Confidence 643
No 201
>PF14837 INTS5_N: Integrator complex subunit 5 N-terminus
Probab=31.38 E-value=3.7e+02 Score=29.40 Aligned_cols=47 Identities=19% Similarity=0.386 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHhh----CcccHHHHHHHHHHH
Q 001803 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARK----LPKMANTCVEGLLAL 358 (1011)
Q Consensus 312 ~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k----~p~~a~~cl~~LL~L 358 (1011)
+.++.||+.|+++.+..+....++.+.+||.. +|..-+.+++-+-.+
T Consensus 2 q~~l~~L~~fi~~~~~~~~~~~~~~lvk~al~lL~~lPaaR~AVley~~~v 52 (213)
T PF14837_consen 2 QNLLDELKSFIRGVRPCYSNKSVEDLVKCALSLLRSLPAARDAVLEYFGLV 52 (213)
T ss_pred chHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35789999999998886666677777777764 577776666654433
No 202
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=31.04 E-value=7e+02 Score=26.84 Aligned_cols=32 Identities=13% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Q 001803 239 EDVKRIVKPLLFILRSSGASKYVVLCNIQVFA 270 (1011)
Q Consensus 239 ~~l~~i~~pLv~LL~s~~eiqYvvL~~I~~i~ 270 (1011)
+.++.+++-|..+|++.+++|-.+.+.+..++
T Consensus 167 ~~F~~~a~~L~~~L~~~~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 167 ESFPSFAKLLGNALYDQPDLRPIICQALRRLV 198 (198)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 45778888899999999999999999887763
No 203
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.01 E-value=1.3e+03 Score=29.89 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=104.1
Q ss_pred CCCChhhHHHHHHHHHHHhccChh-hhHHHHHHHHHH-Hh---cCCChhHHHHHHHHHHHhCCC---cccchHHHHHHHH
Q 001803 22 RDPSVFVRKCAANALPKLHELRQE-EITSAIEEIVGI-LL---NDRSPGVVGAAAAAFASICPN---NFTLIGRNYRNLC 93 (1011)
Q Consensus 22 ~D~SPYVRKtAA~AI~Kly~ldpe-~~~~~L~eil~~-LL---~D~dp~VvgsAv~Af~EIcP~---r~dLihk~yrkLc 93 (1011)
.--.+.+||- ..|++.++-. ...++++.++.. |+ +...+.-+..=+.+|.+-.|+ ..|++.+.|++|+
T Consensus 16 ~s~agh~~kl----~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlL 91 (892)
T KOG2025|consen 16 QSDAGHYSKL----LAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLL 91 (892)
T ss_pred hhhcchHHHH----HHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHH
Confidence 3344557776 4455555432 344566666663 33 244455555666666666654 3578888888888
Q ss_pred HhCCCCChhhHHHHHHHHHHhhhhcccccchhhhhhhhhcccCCCcccccccccccccCCCCCCccchhhhhhhcccccc
Q 001803 94 QILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIE 173 (1011)
Q Consensus 94 ~~L~d~dEWgQv~iL~lL~rY~r~~~~~~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~i~ 173 (1011)
+-...-+-=-.-..+.+|.+..- .
T Consensus 92 Rg~Eskdk~VRfrvlqila~l~d--------------~------------------------------------------ 115 (892)
T KOG2025|consen 92 RGTESKDKKVRFRVLQILALLSD--------------E------------------------------------------ 115 (892)
T ss_pred hcccCcchhHHHHHHHHHHHHhc--------------c------------------------------------------
Confidence 87765554334444444444320 0
Q ss_pred ccccccccCCCcccccccccCccccCCCCChhH-HHHHHhhhhhccCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 001803 174 GLGEYLTRSSDTNARSSDLNGARFTSGKTNDDV-KLLLQCTSPLLWSHNSAVVLAAAGVHWIMS--PKEDVKRIVKPLLF 250 (1011)
Q Consensus 174 ~~de~~~~~~~~~~~~~~~~~~~~~~~~~D~Dl-~lLL~~~~pLLqS~NsAVVlaaa~l~~~la--p~~~l~~i~~pLv~ 250 (1011)
..++|+|+ ..|+..+...|.-|-++|=.+|+.+..++. |.+.=-.+++.|..
T Consensus 116 -------------------------~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~ 170 (892)
T KOG2025|consen 116 -------------------------NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECPVVNLLKD 170 (892)
T ss_pred -------------------------ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 01245554 456667777888999999999988866653 44444567888999
Q ss_pred Hhcc--CCcchHHHHHHHHHHHHhCC
Q 001803 251 ILRS--SGASKYVVLCNIQVFAKALP 274 (1011)
Q Consensus 251 LL~s--~~eiqYvvL~~I~~i~~~~p 274 (1011)
++.+ ++|+|-.||.+|..=...+|
T Consensus 171 liqnDpS~EVRRaaLsnI~vdnsTlp 196 (892)
T KOG2025|consen 171 LIQNDPSDEVRRAALSNISVDNSTLP 196 (892)
T ss_pred HHhcCCcHHHHHHHHHhhccCcccch
Confidence 9976 47899999999865333333
No 204
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.65 E-value=1.5e+03 Score=30.70 Aligned_cols=271 Identities=14% Similarity=0.178 Sum_probs=129.1
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHHHHHhccC-----CcchHHHHHHHHHHHHhCC-----ccccccccceeeccCCcHH
Q 001803 225 VLAAAG-VHWIMSPKEDVKRIVKPLLFILRSS-----GASKYVVLCNIQVFAKALP-----HLFVPHYEDFFVSSSDSYQ 293 (1011)
Q Consensus 225 Vlaaa~-l~~~lap~~~l~~i~~pLv~LL~s~-----~eiqYvvL~~I~~i~~~~p-----~lF~~~l~~Ffv~~~Dp~~ 293 (1011)
|+.+++ .|++..|.+....+...+.-+.... +-.++-.|+-+..++...+ .+| -+..-|. .++..-
T Consensus 593 ~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~--~v~~~~e-~~~~~~ 669 (1176)
T KOG1248|consen 593 VLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLF--TVDPEFE-NSSSTK 669 (1176)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHH--HhhHHhh-ccccHH
Confidence 445555 7888888776666666665554432 3345555555555554333 233 1111122 233456
Q ss_pred HHHHHHHHHHhhcCC--------CCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhcc
Q 001803 294 SKALKLEILSSIVTE--------SSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLT 365 (1011)
Q Consensus 294 IK~lKLeIL~~Lane--------~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~ 365 (1011)
|+++.-+||..|..- +++..|.+.|..=+.+.+.-..+....++.++-...+. |..+.+.+++-.-.+.
T Consensus 670 vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~---e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSA---EHCDLIPKLIPEVILS 746 (1176)
T ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHh
Confidence 899999999988765 56666777776666666666666667777777766662 2222333322210000
Q ss_pred ccccCCCCCCcchhhHHHHHHHH--Hh---hCCcchHHHHHHHHHhhhc--cC-chhHH----HHhhhhhccccCCCCCc
Q 001803 366 SDIESGNGEADVLIQSIISIKSI--IK---QDPSCHEKVIIQLFRSLDS--IK-VPEAR----VMIIWMVGEYSSVGVKI 433 (1011)
Q Consensus 366 ~~~~~~~~~~~vV~E~V~vIk~L--lq---~~P~~~~~ii~~L~~~Ld~--I~-~p~Ar----AsIiWLIGEY~~~~e~i 433 (1011)
....+ +......-+++..|..| .. +.| ...+|......|.. +. .+.-+ .++--++-||...++.
T Consensus 747 ~Ke~n-~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~- 822 (1176)
T KOG1248|consen 747 LKEVN-VKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDD- 822 (1176)
T ss_pred ccccc-HHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccH-
Confidence 11100 01111234455555531 11 122 12233332222211 11 12222 2333566677654331
Q ss_pred cccHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHhhhcCCCCh-HHHHHHHHHHHHHHccCCChHHHhHHHHHHHHc
Q 001803 434 PRMLTTVLKYLAWCFK-SEAVETKLQILNTTIKVLLCAKGGDM-WTITRLFSYLLELAECDLNYDVRDRARFFKKLF 508 (1011)
Q Consensus 434 p~ia~dvLR~l~k~F~-~E~~~VKlqILta~aKL~~~~p~e~~-~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL 508 (1011)
+ .++.++..+. .|. ....++.-..+-+..-+....|.++. ..+..|+--+|.+ ..|..-.+|-..|.+..-|
T Consensus 823 ~-~l~~li~~V~-~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~l-s~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 823 E-TLEKLISMVC-LYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLAL-SHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred H-HHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHH
Confidence 2 3566666544 443 44444444444433333333454321 1233355555555 3455666777776554333
No 205
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.95 E-value=60 Score=28.77 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=26.3
Q ss_pred CeEEEEEEEEeCCCCceeeeEeeccccchhhhhh
Q 001803 758 QLVCLETFFENCSSETMSEVTLVDEESHKALDLA 791 (1011)
Q Consensus 758 ~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~ 791 (1011)
.-+...|+++|.+..+..+|.|.+. +|+|+
T Consensus 41 d~v~ytitvtN~G~~~a~nv~v~D~----lp~g~ 70 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPATNVVVTDT----LPAGL 70 (76)
T ss_pred CEEEEEEEEEECCCCeeEeEEEEEc----CCCCC
Confidence 4566789999999999999999986 78886
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.35 E-value=1.1e+02 Score=40.34 Aligned_cols=64 Identities=25% Similarity=0.290 Sum_probs=49.5
Q ss_pred HHHhhcCCCChhhHHHHHHHHHHHhccChhh----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCC
Q 001803 16 AVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1011)
Q Consensus 16 aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP 79 (1011)
++...-.|+.|.-|.-+++|+.+|++-.++. ..+.-.+.|..+|.|.-|.|-+|||.||-...-
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 3333333368999999999999999876632 344566788889999999999999999876653
No 207
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=29.26 E-value=6.5e+02 Score=33.19 Aligned_cols=147 Identities=12% Similarity=0.250 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccH--HHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHH-
Q 001803 308 ESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMA--NTCVEGLLALIRQELLTSDIESGNGEADVLIQSIIS- 384 (1011)
Q Consensus 308 e~Nv~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a--~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~v- 384 (1011)
.-.+-+++.++.+|+.+.+...++++|+-+...+...|... ..-+..|+.+-... -.+...+.+++..
T Consensus 38 s~tl~dlV~sl~~yl~s~n~~~Rakai~llsqvl~~~p~d~L~k~EVs~Ll~fyq~r---------ldd~~la~~~~l~~ 108 (1030)
T KOG1967|consen 38 STTLLDLVTSLGTYLTSDNPEERAKAIELLSQVLSEFPKDLLQKKEVSVLLQFYQNR---------LDDSALAKEAVLGG 108 (1030)
T ss_pred cccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHHHHhH---------HHHhhhhHHHHHHH
Confidence 44677899999999999999999999999999988888732 33345555554321 1223445666554
Q ss_pred HHHHHhh--CCcchHHHHHHHHHh-hhccCchh--------HHHHhhhhhccccCCCCCccccHHHHHHH-HHHhhccCh
Q 001803 385 IKSIIKQ--DPSCHEKVIIQLFRS-LDSIKVPE--------ARVMIIWMVGEYSSVGVKIPRMLTTVLKY-LAWCFKSEA 452 (1011)
Q Consensus 385 Ik~Llq~--~P~~~~~ii~~L~~~-Ld~I~~p~--------ArAsIiWLIGEY~~~~e~ip~ia~dvLR~-l~k~F~~E~ 452 (1011)
++.++-+ -|+. -+..+++. +++.+.+. +---+.|++-.|-.. +-...+|++=. |.+.+..|-
T Consensus 109 l~aL~~~~~~p~~---~ivsllkalfq~~~vqs~aq~~R~~~~~Il~~~l~~~~~~---l~s~~~D~~~~~f~~~~~GEK 182 (1030)
T KOG1967|consen 109 LKALILMSKLPDN---FIVSLLKALFQEVQVQSLAQKERLLQYEILEWFLDYRLEF---LKSLGPDFLFTAFCKVVDGEK 182 (1030)
T ss_pred HHHHHHhhcCCch---HHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHHHHHH---HhcccchHHHHHHHHHhcCCC
Confidence 6665533 3443 23333433 33333321 112344777666421 11223455544 667777776
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001803 453 VETKLQILNTTIKVLLC 469 (1011)
Q Consensus 453 ~~VKlqILta~aKL~~~ 469 (1011)
+.==+.+.-.+.|....
T Consensus 183 DPRnLml~F~l~~~i~s 199 (1030)
T KOG1967|consen 183 DPRNLMLVFSLVKEISS 199 (1030)
T ss_pred CchhhHHHHHHHHHHhh
Confidence 65556666666665554
No 208
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=28.94 E-value=2.4e+02 Score=30.79 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHh-cCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHhC
Q 001803 26 VFVRKCAANALPKLHELRQEEITSAIEEIVGILL-NDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQIL 96 (1011)
Q Consensus 26 PYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL-~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L 96 (1011)
..+.-..|.++.-+...+| +.-.+++..|..+| .+.++.+.+.|+-++..+|+..+-=+.+..+-+-..|
T Consensus 98 ~~~~i~~a~s~~~ic~~~p-~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l 168 (234)
T PF12530_consen 98 WECLISIAASIRDICCSRP-DHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKL 168 (234)
T ss_pred HHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 3334444566666777788 46677888888999 7889999999999999999865333444555555555
No 209
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=28.79 E-value=48 Score=40.92 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=12.8
Q ss_pred cCCCChhhHHHHHHHHHHHhc
Q 001803 21 ARDPSVFVRKCAANALPKLHE 41 (1011)
Q Consensus 21 l~D~SPYVRKtAA~AI~Kly~ 41 (1011)
..|.+||-.-+|.|-..==|.
T Consensus 39 s~d~npyqk~taLh~wLLgYE 59 (1001)
T COG5406 39 SQDVNPYQKNTALHIWLLGYE 59 (1001)
T ss_pred ccccChhhhhhHHHHHHHhcc
Confidence 356778877776665554443
No 210
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=28.54 E-value=3.1e+02 Score=33.38 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=69.5
Q ss_pred HHHHHHhhcCC-CChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHh---cCCChhHHHHHHHH----HHHhCCCcccc
Q 001803 13 VLVAVGKCARD-PSVFVRKCAANALPKLHELRQEEITSAIEEIVGILL---NDRSPGVVGAAAAA----FASICPNNFTL 84 (1011)
Q Consensus 13 v~~aIkk~l~D-~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL---~D~dp~VvgsAv~A----f~EIcP~r~dL 84 (1011)
++..+-..+.| .++-.||-|.--|-|+..--|.-..+.-...+.+.| +|.++.|++.|.-+ +..+.|..
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--- 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--- 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh---
Confidence 34567778888 777788888888888988777433333333455556 59999999988765 44445654
Q ss_pred hHHHHHHHHHhCCCCChhhHHHHHHHHHHhh
Q 001803 85 IGRNYRNLCQILPDVEEWGQILLIEILLRYV 115 (1011)
Q Consensus 85 ihk~yrkLc~~L~d~dEWgQv~iL~lL~rY~ 115 (1011)
.+-.+|.+|...|+=--+.+|+|++|..
T Consensus 407 ---~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~ 434 (516)
T KOG2956|consen 407 ---CIVNISPLILTADEPRAVAVIKMLTKLF 434 (516)
T ss_pred ---HHHHHhhHHhcCcchHHHHHHHHHHHHH
Confidence 4556777777788888899999999986
No 211
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=28.43 E-value=90 Score=33.10 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=39.1
Q ss_pred CeEEEEEEEEeCCCCceeeeEeeccccchhh-hhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEe
Q 001803 758 QLVCLETFFENCSSETMSEVTLVDEESHKAL-DLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVR 833 (1011)
Q Consensus 758 ~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgid 833 (1011)
.=+.|++++-|.++.+..+|.|.|.. .| ++.. +.+ ...--.+++|+||++++...-+.
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~---fp~~~F~--lvs-------------G~~s~~~~~i~pg~~vsh~~vv~ 96 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDS---FPPEDFE--LVS-------------GSLSASWERIPPGENVSHSYVVR 96 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCC---CCccccE--ecc-------------CceEEEEEEECCCCeEEEEEEEe
Confidence 44568899999999999999999842 22 2211 000 01112467999999998877665
No 212
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=28.30 E-value=9.4e+02 Score=27.50 Aligned_cols=66 Identities=14% Similarity=0.210 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Q 001803 295 KALKLEILSSIVTESSISSVFKEFQDYI-RDPDRRFAADTVAAIGLCARKL-PKMANTCVEGLLALIR 360 (1011)
Q Consensus 295 K~lKLeIL~~Lane~Nv~~IL~EL~~Yv-~~~D~efv~~aI~AIG~~A~k~-p~~a~~cl~~LL~LLs 360 (1011)
|.+-.++|..+-.......|+..|..|+ ++.+..-...++.+++.-..++ .+..+.+++++.+=++
T Consensus 4 r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~ 71 (339)
T PF12074_consen 4 RVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLK 71 (339)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhc
Confidence 5566778888888556678999998888 4566667777888888888777 6666777777776554
No 213
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=28.01 E-value=3.5e+02 Score=30.27 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=35.4
Q ss_pred HHHHHHHHhccC-CcchHHHHHHHHHHHHhCCccccccccceeeccCCcHHHHHHHHHHHHhhcCCCCH
Q 001803 244 IVKPLLFILRSS-GASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSIVTESSI 311 (1011)
Q Consensus 244 i~~pLv~LL~s~-~eiqYvvL~~I~~i~~~~p~lF~~~l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~Nv 311 (1011)
+.+=|.|.|+.+ ++.+ -+-+.+.. -++++.++--..+.+.+...|-...|++|..|+.+-.+
T Consensus 14 ~LkdL~r~lr~dd~~~~-~v~r~lg~-----~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~ 76 (266)
T PF04821_consen 14 CLKDLKRFLRRDDEDQR-DVRRQLGE-----WNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIEL 76 (266)
T ss_pred HHHHHHHHHHHhCcchH-HHHHHHHH-----hchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHH
Confidence 445567777653 3333 33333322 23555555445555554556888889999999875443
No 214
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=27.81 E-value=58 Score=36.25 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=4.1
Q ss_pred cHHHHhhccC
Q 001803 559 SLSQIVLHAA 568 (1011)
Q Consensus 559 SLS~~~~~~~ 568 (1011)
+=+|-+|...
T Consensus 229 tR~hkyGRQ~ 238 (314)
T PF06524_consen 229 TRSHKYGRQG 238 (314)
T ss_pred eecchhcccc
Confidence 3334444433
No 215
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=27.77 E-value=72 Score=35.55 Aligned_cols=7 Identities=29% Similarity=0.339 Sum_probs=3.4
Q ss_pred CCcHHHH
Q 001803 557 PGSLSQI 563 (1011)
Q Consensus 557 lGSLS~~ 563 (1011)
+|.-|-+
T Consensus 180 lGq~sCL 186 (314)
T PF06524_consen 180 LGQYSCL 186 (314)
T ss_pred ccchhhh
Confidence 4555544
No 216
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.64 E-value=63 Score=38.68 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=8.8
Q ss_pred CcHHHHhhccC-CCCccCCC
Q 001803 558 GSLSQIVLHAA-PGYEPLPK 576 (1011)
Q Consensus 558 GSLS~~~~~~~-~gY~~Lp~ 576 (1011)
-+|+..++..+ .|-.+.|+
T Consensus 71 ~~l~~~i~~~~e~~~~~~~~ 90 (483)
T KOG2236|consen 71 PPLAAKIEMKAEDGSVDQPD 90 (483)
T ss_pred ccchhhhccccccCcccccc
Confidence 34555554444 44344444
No 217
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.27 E-value=57 Score=41.17 Aligned_cols=56 Identities=25% Similarity=0.214 Sum_probs=32.4
Q ss_pred cCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCC
Q 001803 21 ARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 21 l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~ 80 (1011)
++|.+--|||+|+.||.=+.-.|| +++..+++-|-..-||-|-..|.+|+-=.|..
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp----~~~~s~V~lLses~N~HVRyGaA~ALGIaCAG 619 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDP----EQLPSTVSLLSESYNPHVRYGAAMALGIACAG 619 (929)
T ss_pred ccccchHHHHHHHHHheeeEecCh----hhchHHHHHHhhhcChhhhhhHHHHHhhhhcC
Confidence 457777777777777775444566 23333443222345677776676776666643
No 218
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=27.25 E-value=1.9e+02 Score=27.21 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=43.5
Q ss_pred CCCChhhHHHHHHHHHHHhcc----ChhhhHHHHHHHHHHHhc--CCChhHHHHHHHHHHHhCCC
Q 001803 22 RDPSVFVRKCAANALPKLHEL----RQEEITSAIEEIVGILLN--DRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 22 ~D~SPYVRKtAA~AI~Kly~l----dpe~~~~~L~eil~~LL~--D~dp~VvgsAv~Af~EIcP~ 80 (1011)
.|.+..+|.-||.-+..+++. .| ..++.+...+.+.|. .++..+.-.|++.+.++-|+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~-~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYP-TLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 466889999999999999875 23 455666666666565 45566888999999998554
No 219
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=26.28 E-value=1.6e+03 Score=32.15 Aligned_cols=126 Identities=17% Similarity=0.330 Sum_probs=78.3
Q ss_pred CCChHHHHHHHHHHHhcC----CHHH------HHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHhCCccccccccc-ee
Q 001803 219 SHNSAVVLAAAGVHWIMS----PKED------VKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLFVPHYED-FF 285 (1011)
Q Consensus 219 S~NsAVVlaaa~l~~~la----p~~~------l~~i~~pLv~LL~s--~~eiqYvvL~~I~~i~~~~p~lF~~~l~~-Ff 285 (1011)
++|..|.+-|+..+-.++ ..++ .+.+.+|+..++.+ +.++|=.+|+++..|+..+.+-+..=-+. |-
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 557676665555432222 2222 34677999887753 57899999999999988765433322221 22
Q ss_pred ec---cCC-cHHHHHHHHHHHHhhcCC----------CCHHHHHHHHHHhhccC-ChhHHHHHHHHHHHHHhhC
Q 001803 286 VS---SSD-SYQSKALKLEILSSIVTE----------SSISSVFKEFQDYIRDP-DRRFAADTVAAIGLCARKL 344 (1011)
Q Consensus 286 v~---~~D-p~~IK~lKLeIL~~Lane----------~Nv~~IL~EL~~Yv~~~-D~efv~~aI~AIG~~A~k~ 344 (1011)
+. ..| -..|-.+.-+++..++++ .++...+.=|..|+... +.++.-.||.-+..|+.++
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 21 123 256778888888766543 56777777788888643 4567777777777665554
No 220
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=6.9e+02 Score=32.71 Aligned_cols=116 Identities=15% Similarity=0.155 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcc--CCcchHHHHHHHHHHHHhCCccc----cccc------cceeeccCCcHHHHHHHHHHHHhhcCC
Q 001803 241 VKRIVKPLLFILRS--SGASKYVVLCNIQVFAKALPHLF----VPHY------EDFFVSSSDSYQSKALKLEILSSIVTE 308 (1011)
Q Consensus 241 l~~i~~pLv~LL~s--~~eiqYvvL~~I~~i~~~~p~lF----~~~l------~~Ffv~~~Dp~~IK~lKLeIL~~Lane 308 (1011)
++.++..|+.||+- +.+|...+-++|.-|+...|.-. ..|. |..-|-|-| +..-.|+-|-.|.-.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiD---vAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYID---VAEQSLQALEKISRR 285 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhH---HHHHHHHHHHHHHhh
Confidence 56788889999974 57889999999999998888421 1111 112223444 344444444444333
Q ss_pred CCHHHHHH--HHHH---hhccCChhHHHHHHHHHHHHHhhCcccHHHH----HHHHHHHHH
Q 001803 309 SSISSVFK--EFQD---YIRDPDRRFAADTVAAIGLCARKLPKMANTC----VEGLLALIR 360 (1011)
Q Consensus 309 ~Nv~~IL~--EL~~---Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~c----l~~LL~LLs 360 (1011)
.+. .||+ -|.. |+.-...-..+.|+...+.|+.+++...-.. |-.|-.||+
T Consensus 286 H~~-AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs 345 (1051)
T KOG0168|consen 286 HPK-AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLS 345 (1051)
T ss_pred ccH-HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHh
Confidence 332 2222 1222 2222223456667777778888887654333 334445554
No 221
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=25.76 E-value=5.9e+02 Score=24.59 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=62.6
Q ss_pred hhhHHHHHHHHhhcC-CCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhcCCChhHH-HHHHHHHHHhCCCc--cc
Q 001803 8 VISPLVLVAVGKCAR-DPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVV-GAAAAAFASICPNN--FT 83 (1011)
Q Consensus 8 ~I~piv~~aIkk~l~-D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~D~dp~Vv-gsAv~Af~EIcP~r--~d 83 (1011)
.+++.+++.+-+++. ...+-.|=+|-+-+..+-..-| -..+.+..+++.++..-.+.-. ..++.++.-+|... .+
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~~ 80 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQENVD 80 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcccccc
Confidence 467888999999999 8888888888888888888766 5556677777777876655544 88999988888543 44
Q ss_pred ch-HHHHHHHH
Q 001803 84 LI-GRNYRNLC 93 (1011)
Q Consensus 84 Li-hk~yrkLc 93 (1011)
.+ .+.+++|+
T Consensus 81 ~lp~~~~~~l~ 91 (121)
T PF12397_consen 81 SLPRKVFKALL 91 (121)
T ss_pred cCCHHHHHHHH
Confidence 33 34555554
No 222
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=25.44 E-value=2.8e+02 Score=34.93 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=73.3
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHHHhc-c-Chhh--hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC---CCc--ccc
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHE-L-RQEE--ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC---PNN--FTL 84 (1011)
Q Consensus 14 ~~aIkk~l~D~SPYVRKtAA~AI~Kly~-l-dpe~--~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc---P~r--~dL 84 (1011)
+..+-+.+.|++-.|-+++.-||..+-- . ++.. -....++++..++.|.++.+..+++-++..+. -+. ..+
T Consensus 421 ~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~ 500 (678)
T KOG1293|consen 421 AQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQL 500 (678)
T ss_pred HHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3344456699999999999999998753 2 2211 34557888999999999999999999998873 222 345
Q ss_pred hHHHHHHHHHhCCCCChhh-HHHHHHHHHHhh
Q 001803 85 IGRNYRNLCQILPDVEEWG-QILLIEILLRYV 115 (1011)
Q Consensus 85 ihk~yrkLc~~L~d~dEWg-Qv~iL~lL~rY~ 115 (1011)
..+...+++-.+-.=.+|+ |-..+++|+.+.
T Consensus 501 ~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 501 LAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 5666555555555556677 888888888764
No 223
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.19 E-value=3.9e+02 Score=28.42 Aligned_cols=51 Identities=31% Similarity=0.391 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHhcc-C------------hhh---hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhC
Q 001803 28 VRKCAANALPKLHEL-R------------QEE---ITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 28 VRKtAA~AI~Kly~l-d------------pe~---~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIc 78 (1011)
||-.|..|+.-+.+. + |+. ....=..++.-++.|.++-|-.+|+.++..+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL 68 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALL 68 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHH
Confidence 677777777666654 2 322 11222334566788999999999998887774
No 224
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=25.13 E-value=7.8e+02 Score=30.64 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhh
Q 001803 329 FAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLD 408 (1011)
Q Consensus 329 fv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld 408 (1011)
-....++++..|+..+.......|+.++++. |- ..++.++..-+..+..|+-.++.-...++..|++.+-
T Consensus 52 ~l~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~---------W~-~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~ 121 (563)
T PF05327_consen 52 QLIRWLKALSSCVSLLDSSCKQLVEAILSLN---------WL-GRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFI 121 (563)
T ss_dssp HHHHHHHHHHHGGGGG-SCCHHHHHHHHT-T---------GG-GS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCC---------CC-CCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3445556777777666665555555554431 10 1233344444445666766777666667777776654
No 225
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=25.04 E-value=9.2e+02 Score=30.04 Aligned_cols=131 Identities=10% Similarity=0.122 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccc----cccCCCCCCcchhhHHHHH
Q 001803 311 ISSVFKEFQDYI-RDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTS----DIESGNGEADVLIQSIISI 385 (1011)
Q Consensus 311 v~~IL~EL~~Yv-~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~----~~~~~~~~~~vV~E~V~vI 385 (1011)
.+.+|+.+..+- ...+.+++.+-++=++.++...+.....|++.|++.+.-..... +...... ..+....-..|
T Consensus 71 ~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~-~~~~~~vH~~L 149 (563)
T PF05327_consen 71 CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQPKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKR-REIYERVHDAL 149 (563)
T ss_dssp CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH-GGGHHHHHHHHHHGGGS-HHHHHH----------------HHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCccccccchhhhhhh-hhhHHHHHHHH
Confidence 888888887763 24677899999999999999999999999999998775311000 0000000 11112233578
Q ss_pred HHHHhhCCcchHHHHHHHHHhhhccCchhH-----HHHhhhhhccccCCCCCccccHHHHHHHHHHhhc
Q 001803 386 KSIIKQDPSCHEKVIIQLFRSLDSIKVPEA-----RVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFK 449 (1011)
Q Consensus 386 k~Llq~~P~~~~~ii~~L~~~Ld~I~~p~A-----rAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~ 449 (1011)
+.|++..|.....+...|.+.+.....+.. ...++|+. +|+ |.+..+++..++++-.
T Consensus 150 ~~Il~lvP~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~-~Y~------P~L~~~Il~lIi~rLi 211 (563)
T PF05327_consen 150 QKILRLVPTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLT-EYC------PELRSDILSLIIERLI 211 (563)
T ss_dssp HHHHHH-GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHH-CC-------GGGHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHH-cch------HHHHHHHHHHHHHHHH
Confidence 999999999988888888888876654421 12345554 454 4455666666665543
No 226
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.03 E-value=2.4e+02 Score=28.17 Aligned_cols=71 Identities=15% Similarity=0.122 Sum_probs=46.0
Q ss_pred HHHhhhhhccCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhccCCcchHHHHHHHHHHHHhCCccccccc
Q 001803 209 LLQCTSPLLWSHNSAVVLAAAGVHWIMSPKEDVKRIVKPLL-FILRSSGASKYVVLCNIQVFAKALPHLFVPHY 281 (1011)
Q Consensus 209 LL~~~~pLLqS~NsAVVlaaa~l~~~lap~~~l~~i~~pLv-~LL~s~~eiqYvvL~~I~~i~~~~p~lF~~~l 281 (1011)
+-+++.+.+..-+-+.+++.+-.+-. . ...-+.++..|. ||-..+|++++.+|.-+-.++..+...|..++
T Consensus 5 i~kATs~~l~~~dw~~~l~icD~i~~-~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev 76 (133)
T smart00288 5 IDKATSPSLLEEDWELILEICDLINS-T-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEV 76 (133)
T ss_pred HHHHcCcCCCCcCHHHHHHHHHHHhC-C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 44555566666666666666554311 1 122344555665 45556799999999999999999887776554
No 227
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=24.33 E-value=7.3e+02 Score=31.25 Aligned_cols=70 Identities=13% Similarity=0.256 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHH
Q 001803 311 ISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKS 387 (1011)
Q Consensus 311 v~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~ 387 (1011)
+..+++.+...+.+.|+.++....+-|+++...+.+.-+...++|+.=|....+ +++..|-.|+|.+++.
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-------DRE~~VR~eAv~~L~~ 158 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-------DREKAVRREAVKVLCY 158 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHH
Confidence 455666666666677778888888888888887777777777777765554322 3445566667666654
No 228
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=24.22 E-value=2.8e+02 Score=32.94 Aligned_cols=87 Identities=14% Similarity=0.053 Sum_probs=64.3
Q ss_pred HHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhh----hHHHHHHHHHHHhcCCChhHHHHHHHHHHHhCCCcccchH
Q 001803 11 PLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE----ITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIG 86 (1011)
Q Consensus 11 piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~----~~~~L~eil~~LL~D~dp~VvgsAv~Af~EIcP~r~dLih 86 (1011)
..+++.+.+.....+.-+|-.-..|+..+.+--|.. +.+.|.+++-+-|.=.|+.|..+++..+..+..+.-+++.
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 344444445555544447777788999888877743 4566777777777767778999999999999988888888
Q ss_pred HHHHHHHHhCC
Q 001803 87 RNYRNLCQILP 97 (1011)
Q Consensus 87 k~yrkLc~~L~ 97 (1011)
+|...|+..|-
T Consensus 402 ~hl~sLI~~LL 412 (415)
T PF12460_consen 402 EHLSSLIPRLL 412 (415)
T ss_pred HHHHHHHHHHH
Confidence 89888877653
No 229
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=24.01 E-value=8.6e+02 Score=25.57 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhh
Q 001803 312 SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQ 391 (1011)
Q Consensus 312 ~~IL~EL~~Yv~~~D~efv~~aI~AIG~~A~k~p~~a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~ 391 (1011)
+.-++.+.+.+.+.+..++..|++-|+.+...==-.-..|+-.|+.|... .+..+-.-+...++.|-++
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts-----------~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETS-----------PNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCC-----------CChHHHHHHHHHHHHHHHH
Confidence 44566666677788888898898888877654323334799999998652 1222333355566777777
Q ss_pred CCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccChHHHHHHHHHHHHHHhhhcC
Q 001803 392 DPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAK 471 (1011)
Q Consensus 392 ~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E~~~VKlqILta~aKL~~~~p 471 (1011)
+|..... ++.+ ..+.+.-+-..-+++...........++..++.-.. .....|...|+..+|.|-...
T Consensus 76 ~~s~v~~---~~~~--------gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 76 HESLVES---RYSE--------GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred hHHHHHH---HHHH--------HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhc
Confidence 7764211 1111 122222221111111000000002345666654444 566788888888888887764
No 230
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=23.97 E-value=1.1e+02 Score=32.32 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=30.8
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccCh
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQ 44 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldp 44 (1011)
-.+.++..+...+.|...||||..+-++.-++..+|
T Consensus 152 ~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 152 DFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 346778888999999999999999999999999999
No 231
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=23.59 E-value=49 Score=42.81 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=69.8
Q ss_pred CChhhHHHHHHHHHHHhccChhhhHHHHHHHH-HHHhcCCChhHHHHHHHHHHHhCCCcccchHHHHHHHHHhCCCCChh
Q 001803 24 PSVFVRKCAANALPKLHELRQEEITSAIEEIV-GILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQILPDVEEW 102 (1011)
Q Consensus 24 ~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil-~~LL~D~dp~VvgsAv~Af~EIcP~r~dLihk~yrkLc~~L~d~dEW 102 (1011)
++|.||.-+.+.++|++--+. .....+++.+ +.|=.-....|-.|.+.|+..+|-.--.++-+++-++-..|.|.+++
T Consensus 943 ~~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~i 1021 (1529)
T KOG0413|consen 943 FSDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVI 1021 (1529)
T ss_pred cchHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHH
Confidence 488999999999999987655 3333333333 33333456677778888999999655456677778888899999999
Q ss_pred hHHHHHHHHHHhhhhccccc
Q 001803 103 GQILLIEILLRYVVASHGLV 122 (1011)
Q Consensus 103 gQv~iL~lL~rY~r~~~~~~ 122 (1011)
-.-..+.+|+|.- ++.|+
T Consensus 1022 VRrqt~ilL~rLL--q~~~v 1039 (1529)
T KOG0413|consen 1022 VRRQTIILLARLL--QFGIV 1039 (1529)
T ss_pred HHHHHHHHHHHHH--hhhhh
Confidence 9888888888876 34444
No 232
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.57 E-value=1.3e+02 Score=39.80 Aligned_cols=126 Identities=22% Similarity=0.354 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhhCCcchHHHHHHHHHhh--hccC--chhHHHHhhhhhccccCCCCCcccc--HHHHHHHHHHhhccChH
Q 001803 380 QSIISIKSIIKQDPSCHEKVIIQLFRSL--DSIK--VPEARVMIIWMVGEYSSVGVKIPRM--LTTVLKYLAWCFKSEAV 453 (1011)
Q Consensus 380 E~V~vIk~Llq~~P~~~~~ii~~L~~~L--d~I~--~p~ArAsIiWLIGEY~~~~e~ip~i--a~dvLR~l~k~F~~E~~ 453 (1011)
+.+...+..+|.+-+....++..+++.+ .... .|..|+..+=-||.++.. .|.+ -.-+||++-|...+-..
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~---yP~~Fl~dsYLKYiGWtLsDk~~ 340 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKS---YPEIFLSDSYLKYIGWTLSDKNG 340 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHh---ccHHHhcchHHHHhcceeecCcc
Confidence 3344445555544444344444444422 2233 378888777777776642 3321 23468999888899999
Q ss_pred HHHHHHHHHHHHHhhhcCCCChH----HHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 001803 454 ETKLQILNTTIKVLLCAKGGDMW----TITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 454 ~VKlqILta~aKL~~~~p~e~~~----~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~ 510 (1011)
.||++.|.++-|||-+. +... .+.++=..++++|-.|.+..||.=+....-++..
T Consensus 341 ~VRl~~lkaL~~L~e~~--~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~ 399 (1048)
T KOG2011|consen 341 TVRLRCLKALIKLYEKD--EDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS 399 (1048)
T ss_pred HHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc
Confidence 99999999999999884 2222 2344556788998777888888877666655543
No 233
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=22.90 E-value=77 Score=35.96 Aligned_cols=92 Identities=20% Similarity=0.250 Sum_probs=59.9
Q ss_pred ChhhHH--HHHHHHH---HHhccChhhhHHHHHHHHHHHhcCCC-hhHH--------HHHHHHHHHhCCCc-ccchHH-H
Q 001803 25 SVFVRK--CAANALP---KLHELRQEEITSAIEEIVGILLNDRS-PGVV--------GAAAAAFASICPNN-FTLIGR-N 88 (1011)
Q Consensus 25 SPYVRK--tAA~AI~---Kly~ldpe~~~~~L~eil~~LL~D~d-p~Vv--------gsAv~Af~EIcP~r-~dLihk-~ 88 (1011)
.-|||. .+|..+. +.|++..+...++|.+.|.+|-.|.+ .+++ ..+-..+..|+|+. .|=+|+ +
T Consensus 45 ~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N 124 (283)
T COG0190 45 QVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYN 124 (283)
T ss_pred HHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhH
Confidence 469984 4555555 67777664467789999999877765 1111 13345688889875 777887 7
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHhhh
Q 001803 89 YRNLCQILPDVEEWGQILLIEILLRYVV 116 (1011)
Q Consensus 89 yrkLc~~L~d~dEWgQv~iL~lL~rY~r 116 (1011)
..+|+..-..+=+-.---||.+|.+|..
T Consensus 125 ~g~L~~~~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 125 LGKLAQGEPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred hcchhcCCCCCCCCCHHHHHHHHHHhCC
Confidence 8899855222223333557778888864
No 234
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=22.74 E-value=73 Score=22.99 Aligned_cols=13 Identities=46% Similarity=0.618 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHh
Q 001803 28 VRKCAANALPKLH 40 (1011)
Q Consensus 28 VRKtAA~AI~Kly 40 (1011)
||..||.|+.++-
T Consensus 1 VR~~Aa~aLg~ig 13 (27)
T PF03130_consen 1 VRRAAARALGQIG 13 (27)
T ss_dssp HHHHHHHHHGGG-
T ss_pred CHHHHHHHHHHcC
Confidence 8999999998763
No 235
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=22.64 E-value=60 Score=40.11 Aligned_cols=6 Identities=33% Similarity=0.622 Sum_probs=2.4
Q ss_pred CCcccc
Q 001803 273 LPHLFV 278 (1011)
Q Consensus 273 ~p~lF~ 278 (1011)
.|-+|.
T Consensus 411 ~p~~~t 416 (1001)
T COG5406 411 NPIVFT 416 (1001)
T ss_pred Cceecc
Confidence 343443
No 236
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=22.48 E-value=2.1e+02 Score=28.45 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=42.6
Q ss_pred HHHHHHHHHhh-ccCChhHHHHHHHHHHHHHhhCcccHHHH-----HHHHHHHHHhhhccccccCCCCCCcchhhHHHHH
Q 001803 312 SSVFKEFQDYI-RDPDRRFAADTVAAIGLCARKLPKMANTC-----VEGLLALIRQELLTSDIESGNGEADVLIQSIISI 385 (1011)
Q Consensus 312 ~~IL~EL~~Yv-~~~D~efv~~aI~AIG~~A~k~p~~a~~c-----l~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vI 385 (1011)
-.+++.|..++ .+.|....+-|..-||.++..+|.-..-+ -..++.||+. .++.|-.||+..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h-----------~d~eVr~eAL~av 110 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH-----------EDPEVRYEALLAV 110 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS------------SSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC-----------CCHHHHHHHHHHH
Confidence 34566666666 33355566667777888888887643222 2345666652 3456788888888
Q ss_pred HHHHhhC
Q 001803 386 KSIIKQD 392 (1011)
Q Consensus 386 k~Llq~~ 392 (1011)
+.|+.++
T Consensus 111 Qklm~~~ 117 (119)
T PF11698_consen 111 QKLMVNN 117 (119)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 8887654
No 237
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.25 E-value=2.5e+03 Score=30.54 Aligned_cols=72 Identities=21% Similarity=0.125 Sum_probs=47.9
Q ss_pred hhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhcc----ChhhhHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHh-CCC
Q 001803 9 ISPLVLVAVGKCARDPSVFVRKCAANALPKLHEL----RQEEITSAIEEIVGILLNDRSP-GVVGAAAAAFASI-CPN 80 (1011)
Q Consensus 9 I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~l----dpe~~~~~L~eil~~LL~D~dp-~VvgsAv~Af~EI-cP~ 80 (1011)
+..++--.++|.+.-..||-|---.+|+.-+|+. .+..+...=+-++..|-.|+.+ .|...++.|+.-+ |+.
T Consensus 913 ~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 913 VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSS 990 (2067)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCC
Confidence 3445555678888888888888778888888875 2312222222356666678775 8899999998766 443
No 238
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.18 E-value=7e+02 Score=29.74 Aligned_cols=120 Identities=18% Similarity=0.259 Sum_probs=61.1
Q ss_pred HHHHHHhhCCcchHHHHHHHHHhhhccCchhHHHHhhhhhccccCCCCCc-----cccHHHHHHHHHHhhccChHHHHHH
Q 001803 384 SIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKI-----PRMLTTVLKYLAWCFKSEAVETKLQ 458 (1011)
Q Consensus 384 vIk~Llq~~P~~~~~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~~~e~i-----p~ia~dvLR~l~k~F~~E~~~VKlq 458 (1011)
.+...+.++|.....++..|.++.... .+. |. +..++|.....+.. ..+...+++.+++....+.-.|=-.
T Consensus 241 ~~~~f~~kdp~l~~~~i~~llk~WP~t-~s~-Ke--v~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAEr 316 (409)
T PF01603_consen 241 CVVQFLEKDPSLAEPVIKGLLKHWPKT-NSQ-KE--VLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAER 316 (409)
T ss_dssp HHHHHHHH-GGGHHHHHHHHHHHS-SS--HH-HH--HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHhCCCC-Cch-hH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 455666777777777777777766532 221 11 22333332222211 2345566777777777666655444
Q ss_pred HHHHH-----HHHhhhcCCCChHHHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 001803 459 ILNTT-----IKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 459 ILta~-----aKL~~~~p~e~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~ 510 (1011)
.|... ..++..+. ...+..++..+.+.++..=|..||+.|.-..++|..
T Consensus 317 Al~~w~n~~~~~li~~~~---~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 317 ALYFWNNEYFLSLISQNS---RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HHGGGGSHHHHHHHHCTH---HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHHhCh---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 43322 11221111 112333444433334444488999999999988864
No 239
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=22.16 E-value=1.4e+02 Score=24.02 Aligned_cols=39 Identities=28% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHHHHhccChhh-hHHHHHHHHHHHhcCCChhHHHHHHHH
Q 001803 35 ALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAA 73 (1011)
Q Consensus 35 AI~Kly~ldpe~-~~~~L~eil~~LL~D~dp~VvgsAv~A 73 (1011)
||..+-..||.- ..+.+...+..-|.|.+|.|=-+|+-+
T Consensus 2 ~l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 466677778842 556788888889999999998888754
No 240
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=22.01 E-value=1.2e+02 Score=40.14 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=8.1
Q ss_pred HHHhHHHHHHHHc
Q 001803 496 DVRDRARFFKKLF 508 (1011)
Q Consensus 496 DVRDRAr~y~~LL 508 (1011)
-+-||.||..+..
T Consensus 1524 ~~adr~Rf~qat~ 1536 (3015)
T KOG0943|consen 1524 AIADRMRFLQATA 1536 (3015)
T ss_pred hHHHHHHHHHHHH
Confidence 4667777766543
No 241
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=21.63 E-value=9.7e+02 Score=31.49 Aligned_cols=91 Identities=19% Similarity=0.247 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHHHHhhCcccHHHHHH-----HHH-HHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcch--H
Q 001803 326 DRRFAADTVAAIGLCARKLPKMANTCVE-----GLL-ALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH--E 397 (1011)
Q Consensus 326 D~efv~~aI~AIG~~A~k~p~~a~~cl~-----~LL-~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~--~ 397 (1011)
+.++--.|+|||..+.+-+|.....+|+ .|+ +|+.. .|++ |.-|++..+..|-|.+|... .
T Consensus 225 n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I-------eyiD----vAEQ~LqALE~iSR~H~~AiL~A 293 (1051)
T KOG0168|consen 225 NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI-------EYID----VAEQSLQALEKISRRHPKAILQA 293 (1051)
T ss_pred cHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhh-------hhhH----HHHHHHHHHHHHHhhccHHHHhc
Confidence 3567777899999999999987666655 333 33332 2221 34446678888888888642 2
Q ss_pred HHHHHHHHhhhccCchhHHHHhhhhhccccC
Q 001803 398 KVIIQLFRSLDSIKVPEARVMIIWMVGEYSS 428 (1011)
Q Consensus 398 ~ii~~L~~~Ld~I~~p~ArAsIiWLIGEY~~ 428 (1011)
..+.....+||-.....=|++ |-+..-.|.
T Consensus 294 G~l~a~LsylDFFSi~aQR~A-laiaaN~Ck 323 (1051)
T KOG0168|consen 294 GALSAVLSYLDFFSIHAQRVA-LAIAANCCK 323 (1051)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 223344445554333322333 444444443
No 242
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=21.47 E-value=74 Score=41.45 Aligned_cols=26 Identities=12% Similarity=0.552 Sum_probs=16.1
Q ss_pred CCCCeEEEEEEEEeCCCCceeeeEee
Q 001803 755 ISPQLVCLETFFENCSSETMSEVTLV 780 (1011)
Q Consensus 755 ~~~~mv~v~l~f~N~s~~~i~~i~i~ 780 (1011)
++|.|+.+-=+++.|-=..+.+|..|
T Consensus 563 VTPalllm~~~L~q~~v~s~~di~~G 588 (840)
T PF04147_consen 563 VTPALLLMSEYLSQCRVRSLRDIASG 588 (840)
T ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 36666666666666665566655554
No 243
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=21.46 E-value=1.4e+03 Score=27.61 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcc--CCcchHHHHHHHHHHHHhCCc---ccccc-------ccceee-ccCCcHHHHHHHHHHHHhhcCCC
Q 001803 243 RIVKPLLFILRS--SGASKYVVLCNIQVFAKALPH---LFVPH-------YEDFFV-SSSDSYQSKALKLEILSSIVTES 309 (1011)
Q Consensus 243 ~i~~pLv~LL~s--~~eiqYvvL~~I~~i~~~~p~---lF~~~-------l~~Ffv-~~~Dp~~IK~lKLeIL~~Lane~ 309 (1011)
..+..++.||+. ..++.--+|.-|..|+...|. +|..+ +..|+- +.++..+|..+...+|+.|+...
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 444455555542 233333345555555555542 33222 223332 23566789999999999987543
No 244
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=21.23 E-value=2.9e+03 Score=30.72 Aligned_cols=155 Identities=17% Similarity=0.170 Sum_probs=90.4
Q ss_pred HHHHHHHhhCccc-HHHHHHHHHHHHHhhhccccccCCCCCCcchhhHHHHHHHHHhhCCcchHHHHHHHHHhhhcc---
Q 001803 335 AAIGLCARKLPKM-ANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSI--- 410 (1011)
Q Consensus 335 ~AIG~~A~k~p~~-a~~cl~~LL~LLs~~~~~~~~~~~~~~~~vV~E~V~vIk~Llq~~P~~~~~ii~~L~~~Ld~I--- 410 (1011)
..|+++|..+... .....+.++..+... ... .-..| ++..+.++.|..-..+..++...++.+
T Consensus 363 ~~~~~~~~a~~~~~~~~~~~~il~~~~~~---------~~~-~~l~e---~l~~l~~rl~~l~~~i~~rll~~~~~vl~~ 429 (2341)
T KOG0891|consen 363 TCIGLLASALGPADQKDLNKDILEQMFKC---------TLS-DSLLE---RLFILSQRIPKLGQSIQDRLLNMTSQVLSG 429 (2341)
T ss_pred HHHHHHhhccCHHHHHhHHHHHHHHHhcC---------Cch-HHHHH---HHHHHHHhccchhhHHHHHHHHHHHHHHhC
Confidence 4566666655443 333336666666531 010 11223 455566666766666666665544321
Q ss_pred ---------------Cchh-----------HHHHhhhhhccccCCCCCccccHHHHHHHHHHhhccC-hHHHHHHHHHHH
Q 001803 411 ---------------KVPE-----------ARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSE-AVETKLQILNTT 463 (1011)
Q Consensus 411 ---------------~~p~-----------ArAsIiWLIGEY~~~~e~ip~ia~dvLR~l~k~F~~E-~~~VKlqILta~ 463 (1011)
..|. --.-..|++|.+...+ ......++..+..|.+. ..+++..-.-.+
T Consensus 430 ~a~~~~~~~~vl~~~~~p~~~~~~~~~~~~~~~~a~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~ 505 (2341)
T KOG0891|consen 430 KAFIQPGQFTVLPKLAIPKAILQKTGDSTDDIQLAFKTLGGFKFSG----YSLTLFVQQCVDSYLEADDSEIRKNAALTC 505 (2341)
T ss_pred ccccCccccCccchhcccchhhhhcccccHHHHHHHHHHhhhhhhh----hhHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 0111 0111358888875421 23567778888888654 567777666666
Q ss_pred HHHhhhcCCC------ChHHHHHHHHHHHHHHccCCChHHHhHHHHHHH
Q 001803 464 IKVLLCAKGG------DMWTITRLFSYLLELAECDLNYDVRDRARFFKK 506 (1011)
Q Consensus 464 aKL~~~~p~e------~~~~l~~L~qyVL~La~~D~n~DVRDRAr~y~~ 506 (1011)
+-++...+.. ..+.++.++++.+.+|..|.++++|-|.++|..
T Consensus 506 ~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~ 554 (2341)
T KOG0891|consen 506 CELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN 554 (2341)
T ss_pred HHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc
Confidence 6665544320 012377789999999999999999999998875
No 245
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=20.91 E-value=2.9e+02 Score=24.90 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=35.0
Q ss_pred CCeEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCCCcccCCCCcccCCCCeeEEEEEEecC
Q 001803 757 PQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLPTLVPMEEITSLEPGQTMKRILEVRFH 835 (1011)
Q Consensus 757 ~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~f~~I~~L~pg~s~~~~lgidF~ 835 (1011)
..=+.|.++++|.+.....++.+.=- .+|-. ..-..|..|+||++.+..+-+.+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~-----~~~~~-------------------~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLY-----LDGNS-------------------VSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEE-----ETTEE-------------------EEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEE-----ECCce-------------------eccEEECCcCCCcEEEEEEEEEeC
Confidence 45567888999999998888777532 12210 012256899999999988877776
No 246
>PRK10941 hypothetical protein; Provisional
Probab=20.83 E-value=2.1e+02 Score=32.18 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHccCCChHHHhHHHHHHHHccC
Q 001803 477 TITRLFSYLLELAECDLNYDVRDRARFFKKLFSH 510 (1011)
Q Consensus 477 ~l~~L~qyVL~La~~D~n~DVRDRAr~y~~LL~~ 510 (1011)
..-+..+.++.+.- |.-+++|||+..|.+|=-.
T Consensus 199 ~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~ 231 (269)
T PRK10941 199 LALRASEALLQFDP-EDPYEIRDRGLIYAQLDCE 231 (269)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCc
Confidence 33355666666533 3358999999999988543
No 247
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.63 E-value=82 Score=27.67 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=14.9
Q ss_pred ccCCCCeeEE-EEEEecC
Q 001803 819 SLEPGQTMKR-ILEVRFH 835 (1011)
Q Consensus 819 ~L~pg~s~~~-~lgidF~ 835 (1011)
.|.|||.+++ +|+|||-
T Consensus 40 nl~pGqK~kaviLhvD~l 57 (65)
T cd05700 40 NVTPGCKLKAVILHVDFV 57 (65)
T ss_pred ecCCCceeEEEEEEEeeE
Confidence 5889999988 8999984
No 248
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=20.61 E-value=76 Score=39.31 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=43.4
Q ss_pred CccchhhhHHHHHHHHhhcCCCChhhHHHHHHHHHHHhccChhhhHHHHHHHHHHHhc--CCChhHHHHHHHHHHHhCCC
Q 001803 3 GIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLN--DRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 3 sIRVp~I~piv~~aIkk~l~D~SPYVRKtAA~AI~Kly~ldpe~~~~~L~eil~~LL~--D~dp~VvgsAv~Af~EIcP~ 80 (1011)
.+..|.+++.++.-|...- +.+.+||-.|+.|+-++-...|+.-.+ ++..++. ..++-|=.+|+.++.+.-|.
T Consensus 516 N~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~----~l~~I~~n~~e~~EvRiaA~~~lm~~~P~ 590 (618)
T PF01347_consen 516 NLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVRE----ILLPIFMNTTEDPEVRIAAYLILMRCNPS 590 (618)
T ss_dssp HHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHH----HHHHHHH-TTS-HHHHHHHHHHHHHT---
T ss_pred ccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHH----HHHHHhcCCCCChhHHHHHHHHHHhcCCC
Confidence 4556666666554333333 558999999999999886667733333 3333443 34577888888888887787
Q ss_pred c
Q 001803 81 N 81 (1011)
Q Consensus 81 r 81 (1011)
.
T Consensus 591 ~ 591 (618)
T PF01347_consen 591 P 591 (618)
T ss_dssp H
T ss_pred H
Confidence 5
No 249
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=20.38 E-value=89 Score=39.33 Aligned_cols=12 Identities=8% Similarity=-0.136 Sum_probs=6.0
Q ss_pred EEEec--CCCCCCC
Q 001803 745 YYSFS--SEASTIS 756 (1011)
Q Consensus 745 ~Y~F~--r~p~~~~ 756 (1011)
+|+|+ |.=++|.
T Consensus 303 e~rl~LlRHWSLyd 316 (622)
T PF02724_consen 303 ELRLMLLRHWSLYD 316 (622)
T ss_pred ccceeeeccCcHHH
Confidence 45555 5544443
No 250
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=20.27 E-value=83 Score=29.80 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=36.3
Q ss_pred eEEEEEEEEeCCCCceeeeEeeccccchhhhhhhhhhhcccccccCCCCCC--CcccCCCCcccCCCCeeEEEEEEecCC
Q 001803 759 LVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTSQSDLP--TLVPMEEITSLEPGQTMKRILEVRFHH 836 (1011)
Q Consensus 759 mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~f~~I~~L~pg~s~~~~lgidF~~ 836 (1011)
=+.|.+.|+|.+++++++|.+.=-... -.| .+++ .+..-.....|+||++.+..+-|.+.+
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~--v~y---------------tG~~~~~~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFT--VEY---------------TGLTRDQFKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEE--EEC---------------TTTEEEEEEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEE--EEE---------------CCcccccEeEEEcceeeCCCCEEEEEEEEEcee
Confidence 356899999999999999776531100 001 1111 011122445899999999999998777
Q ss_pred C
Q 001803 837 H 837 (1011)
Q Consensus 837 ~ 837 (1011)
-
T Consensus 79 y 79 (107)
T PF00927_consen 79 Y 79 (107)
T ss_dssp H
T ss_pred E
Confidence 5
No 251
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=20.25 E-value=1.7e+02 Score=28.30 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhhCcccHHHHH--HHHHHHHHhhhccccccCCCCCCcchhh-HHHHHHHHHhhCCcchHH
Q 001803 329 FAADTVAAIGLCARKLPKMANTCV--EGLLALIRQELLTSDIESGNGEADVLIQ-SIISIKSIIKQDPSCHEK 398 (1011)
Q Consensus 329 fv~~aI~AIG~~A~k~p~~a~~cl--~~LL~LLs~~~~~~~~~~~~~~~~vV~E-~V~vIk~Llq~~P~~~~~ 398 (1011)
|+...|+.||.++-+-+.+-+.+. .++--+|+...+ +....++.| +|..||.|+..+++.+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~i-------D~~nP~irEwai~aiRnL~e~n~eNQ~~ 67 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNI-------DDHNPFIREWAIFAIRNLCEGNPENQEF 67 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCC-------CcccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 677888999999988887766553 455555554211 223345666 788999999999986543
No 252
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=20.09 E-value=1.1e+03 Score=27.75 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=75.9
Q ss_pred ChhHHHHHHhhhhhccCCChHHHHHHHHHHH-hcCCH--HH-HHHHHHHHHHHhcc--CCc-chHHHHHHHHHHHHhCCc
Q 001803 203 NDDVKLLLQCTSPLLWSHNSAVVLAAAGVHW-IMSPK--ED-VKRIVKPLLFILRS--SGA-SKYVVLCNIQVFAKALPH 275 (1011)
Q Consensus 203 D~Dl~lLL~~~~pLLqS~NsAVVlaaa~l~~-~lap~--~~-l~~i~~pLv~LL~s--~~e-iqYvvL~~I~~i~~~~p~ 275 (1011)
++|+...|+++..|++..++-=+.+.+..|+ .+++. .. -+...+.|-.|.+. .+. +||-++.++.+++..+.-
T Consensus 60 ekdle~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~ 139 (378)
T KOG2753|consen 60 EKDLECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKL 139 (378)
T ss_pred cchHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcce
Confidence 4678888888888888777644444444333 22221 11 11223333344432 333 999999999999987752
Q ss_pred --ccccc---ccceeeccCCcHHHHHHHHHHHHhhcCCCC----HHHHHHHHHHhhccCCh-hHHHHHHHHHHHHHhhCc
Q 001803 276 --LFVPH---YEDFFVSSSDSYQSKALKLEILSSIVTESS----ISSVFKEFQDYIRDPDR-RFAADTVAAIGLCARKLP 345 (1011)
Q Consensus 276 --lF~~~---l~~Ffv~~~Dp~~IK~lKLeIL~~Lane~N----v~~IL~EL~~Yv~~~D~-efv~~aI~AIG~~A~k~p 345 (1011)
...+. ++.||--.+=+..=.+.=+..+..-.-+.+ ...++-||+.-.+..|. +-+.+|.++|-+ |.+-|
T Consensus 140 ~~~i~~~lk~~~~~lkew~~~vedqrel~r~v~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~-av~dP 218 (378)
T KOG2753|consen 140 IEYIVPNLKQLDDWLKEWNISVEDQRELLRAVHKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVE-AVKDP 218 (378)
T ss_pred eeeecccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHH-HHcCC
Confidence 23333 344543333333233333344444333444 45566676654444443 344455566554 55666
Q ss_pred cc
Q 001803 346 KM 347 (1011)
Q Consensus 346 ~~ 347 (1011)
..
T Consensus 219 ~~ 220 (378)
T KOG2753|consen 219 KI 220 (378)
T ss_pred ce
Confidence 54
Done!