Query 001803
Match_columns 1011
No_of_seqs 256 out of 841
Neff 5.8
Searched_HMMs 29240
Date Tue Mar 26 16:57:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001803.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1098-1102//hhsearch_pdb/001803hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_A Adaptor protein complex 1.0 1 1 535.0 19.6 432 1-546 135-607 (621)
2 2vgl_B AP-2 complex subunit be 1.0 1 1 533.9 40.4 447 1-568 110-578 (591)
3 1w63_A Adapter-related protein 1.0 1 1 479.1 32.8 442 1-569 131-609 (618)
4 3tjz_B Coatomer subunit gamma; 1.0 1 1 222.7 8.7 220 1-308 128-354 (355)
5 2g30_A AP-2 complex subunit be 1.0 1 1 174.7 21.8 222 725-1005 28-257 (258)
6 2vgl_B AP-2 complex subunit be 1.0 1 1 109.3 22.9 389 14-511 51-456 (591)
7 1b3u_A Protein (protein phosph 1.0 1 1 108.7 22.8 286 14-346 12-314 (588)
8 1w63_A Adapter-related protein 1.0 1 1 104.8 22.7 353 16-472 74-455 (618)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 100.3 31.9 377 21-488 57-491 (852)
10 4fdd_A Transportin-1; heat rep 1.0 1 1 97.9 31.8 67 12-78 90-156 (852)
No 1
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=534.99 Aligned_cols=432 Identities=17% Similarity=0.224 Sum_probs=361.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 987451021588999998621--8999015799999999974037034387--899999988228991379999999998
Q 001803 1 MAGIRLHVISPLVLVAVGKCA--RDPSVFVRKCAANALPKLHELRQEEITS--AIEEIVGILLNDRSPGVVGAAAAAFAS 76 (1011)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l--~D~sPYVRK~AA~AI~Kly~ldP~~~~~--~L~eil~~LL~D~dp~VvgsAi~Al~E 76 (1011)
||+|+.|++++.++.+|++++ .|++|||||+||+|+.|+|+++| +..+ .+.+.+..||+|+||+|+++|+.++.+
T Consensus 135 L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~ 213 (621)
T 2vgl_A 135 IANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITT 213 (621)
T ss_dssp HHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCH-HHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 6655979999999999999981799977999999999999997491-005712399999998479980299999999999
Q ss_pred HCCCCC----CCHHHHHHHHHHHCC--CC-----------CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 598961----214899999997589--99-----------9114999999999733211466420101121110257774
Q 001803 77 ICPNNF----TLIGRNYRNLCQILP--DV-----------EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSE 139 (1011)
Q Consensus 77 IcPdr~----dLihk~yrkLc~lL~--d~-----------dEWgQv~iL~lL~rY~r~~~~f~~ps~mf~~~~~~~~~~~ 139 (1011)
+|+++. .++++.++.|++++. ++ +||+|+.+|++|.+|++... |..
T Consensus 214 i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d----~~~------------- 276 (621)
T 2vgl_A 214 LAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPED----PAV------------- 276 (621)
T ss_dssp HHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSS----HHH-------------
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCC----HHH-------------
T ss_conf 999696989988899999999998678998620011589996399999999987288888----899-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HH--
Q ss_conf 21000000011389999766401232100000024432113577755556666576446898874699999953--11--
Q 001803 140 KDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCT--SP-- 215 (1011)
Q Consensus 140 e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~--~p-- 215 (1011)
.. .+.+.+..+++.+ .|
T Consensus 277 ----------------------------~~-------------------------------~l~~~L~~il~~~~~~~ks 297 (621)
T 2vgl_A 277 ----------------------------RG-------------------------------RLTECLETILNKAQEPPKS 297 (621)
T ss_dssp ----------------------------HH-------------------------------HHHHHHHHHHHHHHSCCSC
T ss_pred ----------------------------HH-------------------------------HHHHHHHHHHHHHCCCCCC
T ss_conf ----------------------------99-------------------------------9999999999861347643
Q ss_pred -HCCCCCH--HHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCC--CCCCCCCCCEEE-C
Q ss_conf -0048995--9999999999936997-889998999999731-688615889999999997699--620001031042-2
Q 001803 216 -LLWSHNS--AVVLAAAGVHWIMSPK-EDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALP--HLFVPHYEDFFV-S 287 (1011)
Q Consensus 216 -LLqS~Ns--AVVlaaa~l~~~lap~-~~l~~i~~pLirLL~-S~~eiqYvvL~~I~~l~~~~p--~lF~~~lk~Ffv-~ 287 (1011)
.|+|+|+ ||+++|+++++++.+. ..+..++.+|.++|. +++|+||++|++|..|+..+| .+|.+|...|+. .
T Consensus 298 ~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L 377 (621)
T 2vgl_A 298 KKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINAL 377 (621)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 45343423888999999999964884999999999999985489932599999999999843685799999999999996
Q ss_pred C-CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 5-894779999999998513887799999999982205972389999999999996296117999999999987321026
Q 001803 288 S-SDSYQSKALKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTS 366 (1011)
Q Consensus 288 ~-~Dp~~IK~lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~~f~~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~~ 366 (1011)
. +++.+||++||++|+.|+|++|+..|++||..|+.+.|.+|+.++|++||+||.+|+..+.||+++|+++++..
T Consensus 378 ~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~---- 453 (621)
T 2vgl_A 378 KTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIA---- 453 (621)
T ss_dssp TTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH----
T ss_pred CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----
T ss_conf 5699875999999999998085359999999999998668888999999999999866896899999999999860----
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH----HHHCCCCCCCCCCCCCHH-HHH
Q ss_conf 656789987403648999999996099644999999999630047034788766----421344578787622089-999
Q 001803 367 DIESGNGEADVLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMII----WMVGEYSSVGVKIPRMLT-TVL 441 (1011)
Q Consensus 367 ~~~~~~~~~~vV~EsV~vIk~Liq~~p~~~~~ii~~L~~~ld~I~~p~ArAsIi----WLIGEY~~~~e~ip~ia~-dvL 441 (1011)
++++..|++.++++|++++|+.+..++.+|+..+. +|.++++++ |++||||+.++..+++.| +++
T Consensus 454 -------~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~---~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l 523 (621)
T 2vgl_A 454 -------GDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQ---APACHENLVKVGGYILGEFGNLIAGDPRSSPLIQF 523 (621)
T ss_dssp -------GGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHT---SSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHCCHHHHHCCCCCCCHHHHH
T ss_conf -------42136999999999973876699999999999873---85334999999999964448774146777778999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99997410370999999999999886625798848999999999998702--9995798689999997068978988631
Q 001803 442 KYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAEC--DLNYDVRDRARFFKKLFSHNLCSQVPEE 519 (1011)
Q Consensus 442 r~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~i~~L~qyvL~La~~--D~n~DVRDRAr~y~~LL~~~~~~~~~~~ 519 (1011)
|.+.++|..|+..||+++||+++|++.+.|+ +...++++|+.+++ |.|+||||||++||+|+..+..
T Consensus 524 ~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~~~------ 592 (621)
T 2vgl_A 524 NLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----VKATIQDVLRSDSQLKNADVELQQRAVEYLRLSTVAST------ 592 (621)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSSCS------
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHH------
T ss_conf 9999875348877999999999999987747-----89999999999705899897999999999999856999------
Q ss_pred HHHHHCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 001001686038878854026888788
Q 001803 520 TNALQENKDLPLVLVECIFRKQENLAA 546 (1011)
Q Consensus 520 ~~~~~~~~d~~~~la~~if~~~~p~~~ 546 (1011)
.+.+.++.++||++.
T Consensus 593 ------------~~~~~vl~~~P~~~~ 607 (621)
T 2vgl_A 593 ------------DILATVLEEMPPFPE 607 (621)
T ss_dssp ------------TTTTTTSSSCCCCCC
T ss_pred ------------HHHHHHHHCCCCCCC
T ss_conf ------------999888513898997
No 2
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=533.86 Aligned_cols=447 Identities=28% Similarity=0.464 Sum_probs=390.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9874510215889999986218999015799999999974037034-387899999988228991379999999998598
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEE-ITSAIEEIVGILLNDRSPGVVGAAAAAFASICP 79 (1011)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldP~~-~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcP 79 (1011)
|++|+.+++.+.++.+|++++.|++|||||+||.|+.|+|+.+|+. ..+.+.+.+..+|.|+++.|..+|+.+|.++|+
T Consensus 110 L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 110 MGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 87589077899999999998179985899999999999985192414463589999999679984399999999999976
Q ss_pred CC-----CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96-----1214899999997589999114999999999733211466420101121110257774210000000113899
Q 001803 80 NN-----FTLIGRNYRNLCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGI 154 (1011)
Q Consensus 80 dr-----~dLihk~yrkLc~lL~d~dEWgQv~iL~lL~rY~r~~~~f~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~ 154 (1011)
+. +++.+..+++|++.+.+++||+|+.+|++|.+|++..
T Consensus 190 ~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~------------------------------------ 233 (591)
T 2vgl_B 190 SHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD------------------------------------ 233 (591)
T ss_dssp SCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS------------------------------------
T ss_pred HCCCCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC------------------------------------
T ss_conf 37875404426999999987488788257899999999867998------------------------------------
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 99766401232100000024432113577755556666576446898874699999953110048995999999999993
Q 001803 155 PSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWI 234 (1011)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~ 234 (1011)
+.+...+++.+.++|++.|++|+++|++++.+
T Consensus 234 ------------------------------------------------~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 234 ------------------------------------------------DREAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp ------------------------------------------------HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf ------------------------------------------------59999999999998758984999999999999
Q ss_pred CCC-----HHH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 699-----788----99989999997316886158899999999976996200010310422589477999999999851
Q 001803 235 MSP-----KED----VKRIVKPLLFILRSSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDSYQSKALKLEILSSI 305 (1011)
Q Consensus 235 lap-----~~~----l~~i~~pLirLL~S~~eiqYvvL~~I~~l~~~~p~lF~~~lk~Ffv~~~Dp~~IK~lKLeIL~~L 305 (1011)
+.+ ++. +.+++.+|++|+++++|+||++|.++..++..+|..|.++++.|+|+++||.+||++||++|+.+
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l 345 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRL 345 (591)
T ss_dssp SCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHH
T ss_conf 74024788799999999999999999669920899999999999986969899988755003699399999999999987
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 38877999999999822059723899999999999962961179999999999873210266567899874036489999
Q 001803 306 VTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISI 385 (1011)
Q Consensus 306 ane~Nv~~IL~EL~~Yv~~~D~~f~~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~~~~~~~~~~~~vV~EsV~vI 385 (1011)
++++|+..|++||.+|+.+.|.+|+.+++++||.||.+++..+.||++.|+++++. .+++++.+++.++
T Consensus 346 ~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~-----------~~~~v~~e~i~~l 414 (591)
T 2vgl_B 346 ASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT-----------KVNYVVQEAIVVI 414 (591)
T ss_dssp CCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-----------CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHHH
T ss_conf 78623999999999998657999999999999999985746799999999999835-----------5168999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99996099644999999999630047034788766421344578787622089999999974103709999999999998
Q 001803 386 KSIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIK 465 (1011)
Q Consensus 386 k~Liq~~p~~~~~ii~~L~~~ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILta~aK 465 (1011)
++|++++|+.++.++.+|++.++.+.+|.++++++|++||||+. ++. ++++++.++++|..|+..||+++|++++|
T Consensus 415 ~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~---~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~K 490 (591)
T 2vgl_B 415 RDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVGEYAER---IDN-ADELLESFLEGFHDESTQVQLTLLTAIVK 490 (591)
T ss_dssp HHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT---CTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC---CCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99999792057899999998887423789999999999703121---367-89999999986645988899999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 866257988489999999999987029-9957986899999970689789886310010016860388788540268887
Q 001803 466 VLLCAKGGDMWTITRLFSYLLELAECD-LNYDVRDRARFFKKLFSHNLCSQVPEETNALQENKDLPLVLVECIFRKQENL 544 (1011)
Q Consensus 466 L~~~~p~e~~~~i~~L~qyvL~La~~D-~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~~~~~d~~~~la~~if~~~~p~ 544 (1011)
++.+.|++. ..+++++|+.+.+| .|+||||||++|++|+..+. ....+.++.++|++
T Consensus 491 l~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~------------------~~~~~~v~~~~p~~ 548 (591)
T 2vgl_B 491 LFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDP------------------VTAKEVVLSEKPLI 548 (591)
T ss_dssp HHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCT------------------THHHHHHTSCCCCC
T ss_pred HHHCCCHHH----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH------------------HHHHHHHCCCCCCC
T ss_conf 996196579----99999999986535899679999999999977498------------------99999874899999
Q ss_pred CCCCCC-CC-----CCCCCCCHHHHHHCCC
Q ss_conf 888997-76-----5767875789842118
Q 001803 545 AASEPI-ND-----RFYLPGSLSQIVLHAA 568 (1011)
Q Consensus 545 ~~~~~~-~~-----r~~~lGSLS~~~~~~~ 568 (1011)
+..++. .. -..++||||++++++.
T Consensus 549 ~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~ 578 (591)
T 2vgl_B 549 SEETDLIEPTLLDELICHIGSLASVYHKPP 578 (591)
T ss_dssp CSCSSCCCHHHHHHHHTTTTSSHHHHTSCG
T ss_pred CCCCCCCCHHHHHHHHHHHCCCHHHHCCCH
T ss_conf 978432477899999987385155525789
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=479.08 Aligned_cols=442 Identities=14% Similarity=0.176 Sum_probs=359.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98745102158899999862189990157999999999740370343878999999882289913799999999985989
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldP~~~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcPd 80 (1011)
||+|+.+++++.++..|++++.|++|||||+||+|+.|+|+.+| +..+.+.+.+..||+|+|+.|+++|+.+|.++|+.
T Consensus 131 L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p-~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 131 LGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP-ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 88629899999999999999759987999999999999998795-87999999999982799773999999999999983
Q ss_pred CCCCHHHHHH----HHHHHCCC---------------CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 6121489999----99975899---------------9911499999999973321146642010112111025777421
Q 001803 81 NFTLIGRNYR----NLCQILPD---------------VEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKD 141 (1011)
Q Consensus 81 r~dLihk~yr----kLc~lL~d---------------~dEWgQv~iL~lL~rY~r~~~~f~~ps~mf~~~~~~~~~~~e~ 141 (1011)
..++ +.+|+ .|+++|.+ .+||+|+.++++|.+|++.. |.. .
T Consensus 210 ~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-----~~~------~-------- 269 (618)
T 1w63_A 210 SPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-----DDS------S-------- 269 (618)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-----HHH------H--------
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-----HHH------H--------
T ss_conf 9588-9999998999999999987279995432268898709999999998738999-----799------9--------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCC
Q ss_conf 000000011389999766401232100000024432113577755556666576446898874699999953110--048
Q 001803 142 VFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPL--LWS 219 (1011)
Q Consensus 142 ~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pL--LqS 219 (1011)
+ .-...|.+.+.+. +++
T Consensus 270 ---------------------------~----------------------------------~~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 270 ---------------------------E----------------------------------AMNDILAQVATNTETSKN 288 (618)
T ss_dssp ---------------------------H----------------------------------TTHHHHHHHHHTSCCSST
T ss_pred ---------------------------H----------------------------------HHHHHHHHHHHCCCCCCC
T ss_conf ---------------------------9----------------------------------999999999735645554
Q ss_pred CCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCC-EEECCCCCHHHHH
Q ss_conf 99599999999999369978-899989999997316-88615889999999997699620001031-0422589477999
Q 001803 220 HNSAVVLAAAGVHWIMSPKE-DVKRIVKPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYED-FFVSSSDSYQSKA 296 (1011)
Q Consensus 220 ~NsAVVlaaa~l~~~lap~~-~l~~i~~pLirLL~S-~~eiqYvvL~~I~~l~~~~p~lF~~~lk~-Ffv~~~Dp~~IK~ 296 (1011)
.|.+|+++|+++++++.+.. ....++.+|++++.+ ++|+||++|.+|..++..+|.+|.+|+.. |+|.++++.+||+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~ 368 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKR 368 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 47899999999999548877999999999999974799743799999999998608899999999999871599966999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999985138877999999999822059723899999999999962961179999999999873210266567899874
Q 001803 297 LKLEILSSIVTESSISSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEAD 376 (1011)
Q Consensus 297 lKLeIL~~Lane~Nv~~IL~EL~~Yv~~~D~~f~~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~~~~~~~~~~~~ 376 (1011)
+||++|+.|++++|+..|++||..|+.+.|.+|+.+++++||+||.+++....||++.|+++++.. +.+
T Consensus 369 ~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~-----------~~~ 437 (618)
T 1w63_A 369 RAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA-----------GSY 437 (618)
T ss_dssp HHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHT-----------GGG
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCH
T ss_conf 999999997164119999999999987288999999999999999985750889999999999863-----------531
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHCCCCCCCC-----------CCCCCHHHHHHH
Q ss_conf 036489999999960996449999999996300-4-703478876642134457878-----------762208999999
Q 001803 377 VLIQSIISIKSIIKQDPSCHEKVIIQLFRSLDS-I-KVPEARVMIIWMVGEYSSVGV-----------KIPRMLTTVLKY 443 (1011)
Q Consensus 377 vV~EsV~vIk~Liq~~p~~~~~ii~~L~~~ld~-I-~~p~ArAsIiWLIGEY~~~~e-----------~ip~ia~dvLr~ 443 (1011)
+..+++.++++|++++|+.+..++.+|++.++. + .++.+++ ++|+|||||+.+. ..|..++++++.
T Consensus 438 v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~-~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~ 516 (618)
T 1w63_A 438 VRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQV-AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILES 516 (618)
T ss_dssp SCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHH-HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 4799999999999568568999999999997452332899999-999982358775146544212457788999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
Q ss_conf 99741037099999999999988662579884899999999999870299957986899999970689789886310010
Q 001803 444 LAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLELAECDLNYDVRDRARFFKKLFSHNLCSQVPEETNAL 523 (1011)
Q Consensus 444 l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~i~~L~qyvL~La~~D~n~DVRDRAr~y~~LL~~~~~~~~~~~~~~~ 523 (1011)
+.++| .++..||.++|++++|++.+.|+. . ..++.+|+.+..|.|+||||||++||+|+....
T Consensus 517 ~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-~----~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~~~----------- 579 (618)
T 1w63_A 517 VLISN-MSTSVTRGYALTAIMKLSTRFTCT-V----NRIKKVVSIYGSSIDVELQQRAVEYNALFKKYD----------- 579 (618)
T ss_dssp HHHST-TCCHHHHHHHHHHHHHHHTTCSSC-H----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTT-----------
T ss_pred HHHCC-CCCHHHHHHHHHHHHHHHHHCCCH-H----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH-----------
T ss_conf 97444-797999999999999999858446-9----999999998358999899999999999980749-----------
Q ss_pred HCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 0168603887885402688878889977657678757898421189
Q 001803 524 QENKDLPLVLVECIFRKQENLAASEPINDRFYLPGSLSQIVLHAAP 569 (1011)
Q Consensus 524 ~~~~d~~~~la~~if~~~~p~~~~~~~~~r~~~lGSLS~~~~~~~~ 569 (1011)
.+.+.++.++||++.. ..|.+|++++|.-.
T Consensus 580 --------~~~~~vl~~~P~~~~~--------~~~~~~~~~~~~~~ 609 (618)
T 1w63_A 580 --------HMRSALLERMPVMEKV--------TTNGPSEIVQTNGE 609 (618)
T ss_dssp --------THHHHHHSCCCCCCC-----------------------
T ss_pred --------HHHHHHHHCCCCCCCC--------CCCCCCCCCCCCCC
T ss_conf --------9998773238999856--------66886533577788
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=1.00 E-value=1 Score=222.66 Aligned_cols=220 Identities=12% Similarity=0.058 Sum_probs=180.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98745102158899999862189990157999999999740370343878999999882289913799999999985989
Q 001803 1 MAGIRLHVISPLVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN 80 (1011)
Q Consensus 1 MssIRvp~I~piv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldP~~~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcPd 80 (1011)
||+||.+++++.+...+++|+.|++|||||+|++|+.|+|..+| +..+.|.+.+..+++|+||+|+.+|+.++.++|..
T Consensus 128 L~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 128 LCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp HHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 86579789999999999998589989999999999999933689-99999999999996499810899999999999862
Q ss_pred CCCCHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6121489999999758999---9114999999999733211466420101121110257774210000000113899997
Q 001803 81 NFTLIGRNYRNLCQILPDV---EEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSR 157 (1011)
Q Consensus 81 r~dLihk~yrkLc~lL~d~---dEWgQv~iL~lL~rY~r~~~~f~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~ 157 (1011)
.. ..+.+|...+.+. +||+|+.+|+++.+|++.+. |
T Consensus 207 d~----~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~----~--------------------------------- 245 (355)
T 3tjz_B 207 DR----LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED----G--------------------------------- 245 (355)
T ss_dssp CH----HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred CH----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC----H---------------------------------
T ss_conf 66----889999999766787582899999999998664463----6---------------------------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 66401232100000024432113577755556666576446898874699999953110048995999999999993699
Q 001803 158 TYDSELVNLVSRSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP 237 (1011)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap 237 (1011)
.....+++.+.+.|++.|+||||+|+++++.+..
T Consensus 246 ----------------------------------------------~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 246 ----------------------------------------------SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ---------------------------------------------------------CCCCCSSHHHHHHHHHHHTC---
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf ----------------------------------------------5689999999999828981999999999993658
Q ss_pred --HHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCC-HHHHHHHHHHHHHHCCC
Q ss_conf --7889998999999731-68861588999999999769962000103104225894-77999999999851388
Q 001803 238 --KEDVKRIVKPLLFILR-SSGASKYVVLCNIQVFAKALPHLFVPHYEDFFVSSSDS-YQSKALKLEILSSIVTE 308 (1011)
Q Consensus 238 --~~~l~~i~~pLirLL~-S~~eiqYvvL~~I~~l~~~~p~lF~~~lk~Ffv~~~Dp-~~IK~lKLeIL~~Lane 308 (1011)
...+..++.+|.++|. +++|+||++|++|..++..+|++++.+-....-+-+|+ ..|..+++..|.+-.+|
T Consensus 280 ~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 280 CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC-------------------------------------------
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 889999999999999976999148999999999999879499999999999870698676999999986313689
No 5
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=1.00 E-value=1 Score=174.71 Aligned_cols=222 Identities=15% Similarity=0.186 Sum_probs=177.0
Q ss_pred CCCCCCEECCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 44685100134557898049998407988899971899999895798751114951143200023454432101244567
Q 001803 725 QVKAKSYTLLDPANGNGLKVYYSFSSEASTISPQLVCLETFFENCSSETMSEVTLVDEESHKALDLADLTLATTASSLTS 804 (1011)
Q Consensus 725 ~~~~k~~~LL~~~~g~GL~v~Y~F~r~p~~~~~~mv~v~l~f~N~s~~~i~~i~i~~~~~~~~~~g~~~~~~~~~~~~~~ 804 (1011)
+++|+ +.||.+..|+||.|.|+|.|+ ..+++++++|+|++.++|.++.|.-. |-.-|+.
T Consensus 28 ~~~p~-~~~l~~~~g~GLeI~g~f~r~-----~g~i~l~l~~~N~s~~~is~faIQfN---kNsFGL~------------ 86 (258)
T 2g30_A 28 YVAPK-AVWLPAVKAKGLEISGTFTHR-----QGHIYMEMNFTNKALQHMTDFAIQFN---KNSFGVI------------ 86 (258)
T ss_dssp CCCCC-EEEECGGGTTTEEEEEEEEEE-----TTEEEEEEEEEECSSSCBCCCEEEEC---CBTTCCE------------
T ss_pred CCCCH-HHCCCCCCCCCEEEEEEEEEE-----CCEEEEEEEEECCCCCCEEEEEEEEC---CCCCCCC------------
T ss_conf 77832-212465578968999999970-----99899999986277453001589973---6654755------------
Q ss_pred CCCCCCCCCCCCC-CCCCCCCEEEEEEEEECCCCCCCC----EEE--EEECCCEEEEEEECCCCCCCCC-CCCCHHHHHH
Q ss_conf 8999976567877-546999736899988627997531----089--9975971226871596322344-2389889999
Q 001803 805 QSDLPTLVPMEEI-TSLEPGQTMKRILEVRFHHHLLPL----KLA--LHCNGKKLPVKLRPDIGYFIKP-VPMDMETFIE 876 (1011)
Q Consensus 805 ~~~~~~~~~f~~I-~~L~pg~s~~~~lgidF~~~~~~~----~~~--l~~~~~~~~v~i~p~vgel~~p-~~ms~~~f~~ 876 (1011)
...+.++ ..|+||+++++.+.|.|++..+.+ ++| |+++.+.|++.+.+|+++|+.| ..|+..+|.+
T Consensus 87 ------p~~~~~~~~~L~pgqs~~v~lpl~~~~~~~~~~p~~~LQVAIKtn~~vfYF~~~ipl~~l~~e~g~m~~~~F~~ 160 (258)
T 2g30_A 87 ------PSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLA 160 (258)
T ss_dssp ------ESSCCCCCSCBCTTCEEEEEEEEESCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGGGBCSCCCCCHHHHHH
T ss_pred ------CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHEEEEECCCCEEEEEEECCHHHHCCCCCCCCHHHHHH
T ss_conf ------17412488753899847999866148855678877311033315896499971058899337767669999999
Q ss_pred HHHCCCCCCCCCCEEECCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCEEEEE
Q ss_conf 86048997443210000467676666653010000013566778998765203411220476323446898997014300
Q 001803 877 MESRLPGMFEYARSCTFTDHLGEVDKDTDESSLLKDKYLVICESLASKMLSNANIFLVSVDMPVAAKFDDASGLSLRFSS 956 (1011)
Q Consensus 877 ~~~~L~GM~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~an~~~v~~~~~~~~~~~~~~~~~~rfa~ 956 (1011)
....+++|||. +.+++.- ..+ .....+-+...|+..|.-- ..++ ...++|++
T Consensus 161 ~Wk~ip~~nE~--~~~i~~~--~~~-----------------~~~i~~kL~~~nif~Va~r-----~~~~--q~~ly~S~ 212 (258)
T 2g30_A 161 TWKDIPNENEL--QFQIKEC--HLN-----------------ADTVSSKLQNNNVYTIAKR-----NVEG--QDMLYQSL 212 (258)
T ss_dssp HHHHSCGGGCE--EEEETTC--CCC-----------------HHHHHHHHHHTTCEEEEEE-----EETT--EEEEEEEE
T ss_pred HHHHCCCCCCE--EEECCCC--CCC-----------------HHHHHHHHHHCCEEEEEEE-----CCCC--CCEEEEEE
T ss_conf 98648886613--6854667--679-----------------8999999987784999710-----1788--70699999
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 0236885089999832666899620789705405689888999998720
Q 001803 957 EILGNSVPCLITITVEGKCSEPLKVSAKVNCEETVFGLNLLNRIVNFLV 1005 (1011)
Q Consensus 957 ~t~~~~~~~lit~~~~~~~~~~~~~~~~vn~e~~v~g~~l~~~~~~~~~ 1005 (1011)
+| .++.++|++|++..+ ++ ++++.++||+++++.++.+.+..+|.
T Consensus 213 kt-~n~i~vL~el~~~~~--~~-~v~l~vks~~~~i~~li~~~~~~~l~ 257 (258)
T 2g30_A 213 KL-TNGIWILAELRIQPG--NP-NYTLSLKCRAPEVSQYIYQVYDSILK 257 (258)
T ss_dssp EB-TTSCEEEEEEEECSS--CS-SEEEEEEESSGGGHHHHHHHHHHHHH
T ss_pred EC-CCCCEEEEEEEECCC--CC-CEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 92-599589999998069--98-27999966982078999999999962
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=109.27 Aligned_cols=389 Identities=11% Similarity=0.054 Sum_probs=232.6
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 99998621899901579999999997403703438789999998822899137999999999859896121489999999
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLC 93 (1011)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldP~~~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcPdr~dLihk~yrkLc 93 (1011)
...|-+++.+.++.+||.+.+++..+.+.+| +....++..+.+.|+|.|+.+.+.|+.++..+.... +.......+.
T Consensus 51 ~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~-e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~--~~~~l~~~l~ 127 (591)
T 2vgl_B 51 FPDVVNCMQTDNLELKKLVYLYLMNYAKSQP-DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDK--ITEYLCEPLR 127 (591)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH-HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGG--GHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH--HHHHHHHHHH
T ss_conf 9999988179989999999999999866580-689999999997769999999999999987589077--8999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 75899991149999999997332114664201011211102577742100000001138999976640123210000002
Q 001803 94 QILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIE 173 (1011)
Q Consensus 94 ~lL~d~dEWgQv~iL~lL~rY~r~~~~f~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 173 (1011)
+.|.+-++.-+-.....|.+..+.. |..
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~-----p~~----------------------------------------------- 155 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDIN-----AQM----------------------------------------------- 155 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSS-----CCC-----------------------------------------------
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHC-----HHH-----------------------------------------------
T ss_conf 9817998589999999999998519-----241-----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH-------HHHHHHH
Q ss_conf 443211357775555666657644689887469999995311004899599999999999369978-------8999899
Q 001803 174 GLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-------DVKRIVK 246 (1011)
Q Consensus 174 ~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~-------~l~~i~~ 246 (1011)
+ ++ .-++..+..+|...|+.|+.+|+.++..+++.. .......
T Consensus 156 ----------------------------~-~~-~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~ 205 (591)
T 2vgl_B 156 ----------------------------V-ED-QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNIN 205 (591)
T ss_dssp ----------------------------H-HH-HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHH
T ss_pred ----------------------------C-CC-CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHCCHHHHH
T ss_conf ----------------------------4-46-35899999996799843999999999999763787540442699999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEE-ECCCCCHHHHHHHHHHHHHHCC-----CCCHHHHHHHHH
Q ss_conf 99997316-8861588999999999769962000103104-2258947799999999985138-----877999999999
Q 001803 247 PLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFF-VSSSDSYQSKALKLEILSSIVT-----ESSISSVFKEFQ 319 (1011)
Q Consensus 247 pLirLL~S-~~eiqYvvL~~I~~l~~~~p~lF~~~lk~Ff-v~~~Dp~~IK~lKLeIL~~Lan-----e~Nv~~IL~EL~ 319 (1011)
.|+..+.. ++-.|-.+|+.+..+....+......+..+. +..+....|+......+..+.+ ++-+..++..+.
T Consensus 206 ~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~ 285 (591)
T 2vgl_B 206 KLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLA 285 (591)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTH
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99874887882578999999998679985999999999999875898499999999999974024788799999999999
Q ss_pred H---HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 8---2205972389999999999996296117999999999987321026656789987403648999999996099644
Q 001803 320 D---YIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIKSIIKQDPSCH 396 (1011)
Q Consensus 320 ~---Yv~~~D~~f~~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~~~~~~~~~~~~vV~EsV~vIk~Liq~~p~~~ 396 (1011)
. .+.+.|.+.+..++++++.++.+.|......+..++.+. +.+..+-.+++..+-.+. ++...
T Consensus 286 ~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~------------~d~~~Ir~~al~~L~~l~--~~~nv 351 (591)
T 2vgl_B 286 PPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKY------------NDPIYVKLEKLDIMIRLA--SQANI 351 (591)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT------------TSCHHHHHHHHHHHHHTC--CSSTH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHEECC------------CCHHHHHHHHHHHHHHHC--CHHHH
T ss_conf 9999996699208999999999999869698999887550036------------993999999999999877--86239
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999999963004703478876642134457878762208999999997410370999999999999886625798848
Q 001803 397 EKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMW 476 (1011)
Q Consensus 397 ~~ii~~L~~~ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~ 476 (1011)
..++..|..++.+. ++..|..++|-||..+. +.|.....++..+.+-+......++..++.....+.-..|.....
T Consensus 352 ~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~---~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~ 427 (591)
T 2vgl_B 352 AQVLAELKEYATEV-DVDFVRKAVRAIGRCAI---KVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYES 427 (591)
T ss_dssp HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCT
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999998657-99999999999999998---574679999999999983551689999999999999979205789
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999870299957986899999970689
Q 001803 477 TITRLFSYLLELAECDLNYDVRDRARFFKKLFSHN 511 (1011)
Q Consensus 477 ~i~~L~qyvL~La~~D~n~DVRDRAr~y~~LL~~~ 511 (1011)
.+..+++. -..+.++++| +...|-|-..+
T Consensus 428 ~v~~L~~~----l~~~~~~~~~--~~~~wilGey~ 456 (591)
T 2vgl_B 428 IIATLCEN----LDSLDEPDAR--AAMIWIVGEYA 456 (591)
T ss_dssp THHHHHHT----TTTCCSHHHH--HHHHHHHHTTC
T ss_pred HHHHHHHH----HHHCCCHHHH--HHHHHHHHCCC
T ss_conf 99999988----8742378999--99999997031
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=108.67 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=121.6
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--CCCCHHHHHH
Q ss_conf 9999862189990157999999999740-370343878999999882289913799999999985989--6121489999
Q 001803 14 LVAVGKCARDPSVFVRKCAANALPKLHE-LRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPN--NFTLIGRNYR 90 (1011)
Q Consensus 14 ~~aIkk~l~D~sPYVRK~AA~AI~Kly~-ldP~~~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcPd--r~dLihk~yr 90 (1011)
+..+.+.+.+.++.+|+.|+.++.++.. +.|+.....+++.+...+ |.++.|...++.++..+++. ..+..+....
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999985062199999999719999998697989998998898755-78589999999999778760585989999899
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHC
Q ss_conf 999758999911499999999973321146642010-112111025777421000000011389999766401-232100
Q 001803 91 NLCQILPDVEEWGQILLIEILLRYVVASHGLVKESI-MSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSE-LVNLVS 168 (1011)
Q Consensus 91 kLc~lL~d~dEWgQv~iL~lL~rY~r~~~~f~~ps~-mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~-~~~~~~ 168 (1011)
-|+.++.+-++--+...++.|...+..- .++.. .+..+.. ..+.. +...... .+..+.
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l-------------~~l~~----~~~~~~R~~a~~~l 150 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLV-------------KRLAG----GDWFTSRTSACGLF 150 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHH-------------HHHHT----CSSHHHHHHHGGGH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHH-------------HHHHC----CCCCHHHHHHHHHH
T ss_conf 9999874760799999999999999979---9999999999999-------------99850----77717999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CH-HHHHHH
Q ss_conf 00002443211357775555666657644689887469999995311004899599999999999369---97-889998
Q 001803 169 RSYIEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMS---PK-EDVKRI 244 (1011)
Q Consensus 169 ~~~~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~la---p~-~~l~~i 244 (1011)
..++. ...+.....++..+..+++..++.|-.++++.+-.++ +. .....+
T Consensus 151 ~~~~~--------------------------~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l 204 (588)
T 1b3u_A 151 SVCYP--------------------------RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI 204 (588)
T ss_dssp HHHTT--------------------------TSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH
T ss_pred HHHHH--------------------------HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 99998--------------------------5699999999999999848997889999999899999981677679999
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHHHCCC-CCCCCCCCEEE-CCCCC-HHHHHHHHHHHHHHCCC---CC-HHHHHH
Q ss_conf 9999997316-886158899999999976996-20001031042-25894-77999999999851388---77-999999
Q 001803 245 VKPLLFILRS-SGASKYVVLCNIQVFAKALPH-LFVPHYEDFFV-SSSDS-YQSKALKLEILSSIVTE---SS-ISSVFK 316 (1011)
Q Consensus 245 ~~pLirLL~S-~~eiqYvvL~~I~~l~~~~p~-lF~~~lk~Ffv-~~~Dp-~~IK~lKLeIL~~Lane---~N-v~~IL~ 316 (1011)
...|..++.. +.++|..++..+..++...+. .+.+++..++. ...|+ ..+|....+.|..++.. .. ...++.
T Consensus 205 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~ 284 (588)
T 1b3u_A 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVP 284 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999882499288999899999999985798888878999999980699778999999999999998195210558999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999822059723899999999999962961
Q 001803 317 EFQDYIRDPDRRFAADTVAAIGLCARKLPK 346 (1011)
Q Consensus 317 EL~~Yv~~~D~~f~~~aI~AIG~lA~k~p~ 346 (1011)
-|...+.+.+.+.+..+..++|.++...+.
T Consensus 285 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 285 AFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHCH
T ss_conf 999985899589999999879999997274
No 8
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=1.00 E-value=1 Score=104.76 Aligned_cols=353 Identities=10% Similarity=0.058 Sum_probs=154.1
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99862189990157999999999740370343878999999882289913799999999985989612148999999975
Q 001803 16 AVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASICPNNFTLIGRNYRNLCQI 95 (1011)
Q Consensus 16 aIkk~l~D~sPYVRK~AA~AI~Kly~ldP~~~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIcPdr~dLihk~yrkLc~l 95 (1011)
.+-+++.+.+.-+||.+-+++..+.+-+| +..-..+..+.+-|+|+|+.|.+.|+.++..|... +++...+..+.+.
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~-e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~ 150 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQ-DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSS--EMCRDLAGEVEKL 150 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHH
T ss_conf 99999818866888879999999817891-89999999998766898784899999998862989--9999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCC
Q ss_conf 89999114999999999733211466420101121110257774210000000113899997664012321000000244
Q 001803 96 LPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSYIEGL 175 (1011)
Q Consensus 96 L~d~dEWgQv~iL~lL~rY~r~~~~f~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~ 175 (1011)
|.+-+++-.-..+-.+.+..+.. |..
T Consensus 151 L~~~~~~VRk~A~~al~~l~~~~-----p~~------------------------------------------------- 176 (618)
T 1w63_A 151 LKTSNSYLRKKAALCAVHVIRKV-----PEL------------------------------------------------- 176 (618)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHC-----GGG-------------------------------------------------
T ss_pred HCCCCHHHHHHHHHHHHHHHHHC-----HHH-------------------------------------------------
T ss_conf 75998799999999999999879-----587-------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHH
Q ss_conf 3211357775555666657644689887469999995311004899599999999999369978-----89998999999
Q 001803 176 GEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSPKE-----DVKRIVKPLLF 250 (1011)
Q Consensus 176 de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap~~-----~l~~i~~pLir 250 (1011)
...++..+..+|...|+.|+.+|+.++..+.+.. .+..++..|+.
T Consensus 177 ------------------------------v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~ 226 (618)
T 1w63_A 177 ------------------------------MEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVR 226 (618)
T ss_dssp ------------------------------GGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf ------------------------------99999999998279977399999999999998395889999998999999
Q ss_pred HHCC----------------CCCCHHHHHHHHHHHHHHCCCCCCC---CCCCEE----ECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 7316----------------8861588999999999769962000---103104----2258947799999999985138
Q 001803 251 ILRS----------------SGASKYVVLCNIQVFAKALPHLFVP---HYEDFF----VSSSDSYQSKALKLEILSSIVT 307 (1011)
Q Consensus 251 LL~S----------------~~eiqYvvL~~I~~l~~~~p~lF~~---~lk~Ff----v~~~Dp~~IK~lKLeIL~~Lan 307 (1011)
+|.. ++-.|-.+|+.+..+....|..-.. .+..+. ...+....+.......+..+.+
T Consensus 227 ~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~ 306 (618)
T 1w63_A 227 ILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS 306 (618)
T ss_dssp HHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99998727999543226889870999999999873899979999999999999735645554478999999999995488
Q ss_pred CCCH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8779-999999998220597238999999999999629611799999999998732102665678998740364899999
Q 001803 308 ESSI-SSVFKEFQDYIRDPDRRFAADTVAAIGLCARKLPKMANTCVEGLLALIRQELLTSDIESGNGEADVLIQSIISIK 386 (1011)
Q Consensus 308 e~Nv-~~IL~EL~~Yv~~~D~~f~~~aI~AIG~lA~k~p~~a~~cL~~Ll~LLs~~~~~~~~~~~~~~~~vV~EsV~vIk 386 (1011)
.... ...+.-|..++.+.|..++..++.+++.++.+.|.....+...++.++.. .+..+-..++..+.
T Consensus 307 ~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d-----------~d~~Ir~~alelL~ 375 (618)
T 1w63_A 307 ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKD-----------LDVSIKRRAMELSF 375 (618)
T ss_dssp CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGS-----------SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC-----------CCHHHHHHHHHHHH
T ss_conf 7799999999999997479974379999999999860889999999999987159-----------99669999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99960996449999999996300470347887664213445787876220899999999741037099999999999988
Q 001803 387 SIIKQDPSCHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGVKIPRMLTTVLKYLAWCFKSEAVETKLQILNTTIKV 466 (1011)
Q Consensus 387 ~Liq~~p~~~~~ii~~L~~~ld~I~~p~ArAsIiWLIGEY~~~~e~ip~ia~dvLr~l~k~F~~E~~~VKlqILta~aKL 466 (1011)
.+. ++.....++..|..++... ++.-|..++.-||..+... +.....++..+.+-+......++..++.....+
T Consensus 376 ~l~--~~~nv~~iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~---~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~i 449 (618)
T 1w63_A 376 ALV--NGNNIRGMMKELLYFLDSC-EPEFKADCASGIFLAAEKY---APSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQL 449 (618)
T ss_dssp HHC--CSSSTHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSS---CCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHH
T ss_pred HHC--CCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 971--6411999999999998728-8999999999999999985---750889999999999863531479999999999
Q ss_pred HHHCCC
Q ss_conf 662579
Q 001803 467 LLCAKG 472 (1011)
Q Consensus 467 ~~~~p~ 472 (1011)
..+.|+
T Consensus 450 i~~~p~ 455 (618)
T 1w63_A 450 ITNSVE 455 (618)
T ss_dssp HHHSCS
T ss_pred HHCCHH
T ss_conf 956856
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=100.33 Aligned_cols=377 Identities=12% Similarity=0.081 Sum_probs=220.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----CCCCCCCHHHHHHH
Q ss_conf 189990157999999999740-----370343878999999882289913799999999985----98961214899999
Q 001803 21 ARDPSVFVRKCAANALPKLHE-----LRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASI----CPNNFTLIGRNYRN 91 (1011)
Q Consensus 21 l~D~sPYVRK~AA~AI~Kly~-----ldP~~~~~~L~eil~~LL~D~dp~VvgsAi~Al~EI----cPdr~dLihk~yrk 91 (1011)
..+.++.||..|+..+-+... +++ +.+..+.+.+-.+|.|.++.|-..+..++.+| .|+.|.- ....
T Consensus 57 ~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~-~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~---ll~~ 132 (852)
T 4fdd_A 57 LKSEDEPTRSLSGLILKNNVKAHFQNFPN-GVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD---LLPK 132 (852)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTTSGGGCCH-HHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTT---HHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHH---HHHH
T ss_conf 68898679999999999989874477999-9999999999998749989999999999999998648135689---9999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
Q ss_conf 99758999911499999999973321146642010112111025777421000000011389999766401232100000
Q 001803 92 LCQILPDVEEWGQILLIEILLRYVVASHGLVKESIMSSLLCIESSHSEKDVFDVNVALEDNGIPSRTYDSELVNLVSRSY 171 (1011)
Q Consensus 92 Lc~lL~d~dEWgQv~iL~lL~rY~r~~~~f~~ps~mf~~~~~~~~~~~e~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~ 171 (1011)
|+..+.+-++..+-..+..|...+... +.
T Consensus 133 L~~~l~~~~~~~r~~al~~L~~i~~~~-----~~---------------------------------------------- 161 (852)
T 4fdd_A 133 LCSLLDSEDYNTCEGAFGALQKICEDS-----AE---------------------------------------------- 161 (852)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHHHHH-----TT----------------------------------------------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHH-----HH----------------------------------------------
T ss_conf 999870999899999999999999985-----78----------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC---HH---HHHHHH
Q ss_conf 024432113577755556666576446898874699999953110048995999999999993699---78---899989
Q 001803 172 IEGLGEYLTRSSDTNARSSDLNGARFTSGKTNDDVKLLLQCTSPLLWSHNSAVVLAAAGVHWIMSP---KE---DVKRIV 245 (1011)
Q Consensus 172 ~~~~de~l~~~~~~~~~~~~~~~~~~~~~~~d~D~~lLL~~~~pLLqS~NsAVVlaaa~l~~~lap---~~---~l~~i~ 245 (1011)
.+. ...+......++..+..++++.++.|-.+|++++..+.. .. .+..+.
T Consensus 162 ------~~~------------------~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l 217 (852)
T 4fdd_A 162 ------ILD------------------SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFI 217 (852)
T ss_dssp ------HHH------------------HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHH
T ss_pred ------HHC------------------HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ------756------------------34313329999999999856797899999999999998646387998899999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEE-----CCCCCHHHHHHHHHHHHHHCCCC--------CH
Q ss_conf 999997316-88615889999999997699620001031042-----25894779999999998513887--------79
Q 001803 246 KPLLFILRS-SGASKYVVLCNIQVFAKALPHLFVPHYEDFFV-----SSSDSYQSKALKLEILSSIVTES--------SI 311 (1011)
Q Consensus 246 ~pLirLL~S-~~eiqYvvL~~I~~l~~~~p~lF~~~lk~Ffv-----~~~Dp~~IK~lKLeIL~~Lane~--------Nv 311 (1011)
..|+.++.. +.+++..++..+..++..+|..+.+|+..++- ..++...+|...++.+..++... .+
T Consensus 218 ~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~ 297 (852)
T 4fdd_A 218 ENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 297 (852)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99998717997789999999999999857798998899999999987069968999999999999860365798878889
Q ss_pred HHHHHHHHHHH-----------CC-----------CCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999822-----------05-----------97238999999999999629611-799999999998732102665
Q 001803 312 SSVFKEFQDYI-----------RD-----------PDRRFAADTVAAIGLCARKLPKM-ANTCVEGLLALIRQELLTSDI 368 (1011)
Q Consensus 312 ~~IL~EL~~Yv-----------~~-----------~D~~f~~~aI~AIG~lA~k~p~~-a~~cL~~Ll~LLs~~~~~~~~ 368 (1011)
..++.-+.... .+ .+...+..+..++++++...+.. ....+..+..++..
T Consensus 298 ~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~------- 370 (852)
T 4fdd_A 298 PKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH------- 370 (852)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-------
T ss_conf 8899999987578676799866984432224564011169999999999998746187899999999998559-------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC--CCCCCHHHHHH
Q ss_conf 67899874036489999999960996----4499999999963004703478876642134457878--76220899999
Q 001803 369 ESGNGEADVLIQSIISIKSIIKQDPS----CHEKVIIQLFRSLDSIKVPEARVMIIWMVGEYSSVGV--KIPRMLTTVLK 442 (1011)
Q Consensus 369 ~~~~~~~~vV~EsV~vIk~Liq~~p~----~~~~ii~~L~~~ld~I~~p~ArAsIiWLIGEY~~~~e--~ip~ia~dvLr 442 (1011)
.+..+-..++..+..|....+. ....++..+...+.+ ..+..|.+.+|.+|.++.... ........++.
T Consensus 371 ----~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 445 (852)
T 4fdd_A 371 ----HEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445 (852)
T ss_dssp ----SSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ----98899999999999998635688998799999999987179-9889999999999999988611047899999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 9997410370999999999999886625798848999999999998
Q 001803 443 YLAWCFKSEAVETKLQILNTTIKVLLCAKGGDMWTITRLFSYLLEL 488 (1011)
Q Consensus 443 ~l~k~F~~E~~~VKlqILta~aKL~~~~p~e~~~~i~~L~qyvL~L 488 (1011)
.+.+...+....||.....+...+.-..+....+.+..++..++.+
T Consensus 446 ~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~ 491 (852)
T 4fdd_A 446 ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFA 491 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999985898889999999999999973676676799999999999
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=97.91 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 8999998621899901579999999997403703438789999998822899137999999999859
Q 001803 12 LVLVAVGKCARDPSVFVRKCAANALPKLHELRQEEITSAIEEIVGILLNDRSPGVVGAAAAAFASIC 78 (1011)
Q Consensus 12 iv~~aIkk~l~D~sPYVRK~AA~AI~Kly~ldP~~~~~~L~eil~~LL~D~dp~VvgsAi~Al~EIc 78 (1011)
.+-..+-+++.|.++.||+.||.++.++.+.++...-+++.+.+..++.+.++.+.-+|+.++..+|
T Consensus 90 ~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 90 FIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKIC 156 (852)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999987499899999999999999986481356899999999870999899999999999999
Done!