Query 001804
Match_columns 1011
No_of_seqs 279 out of 1540
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001804.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001804hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1993 Nuclear transport rece 100.0 2E-144 5E-149 1191.8 85.1 953 11-1011 2-978 (978)
2 KOG1991 Nuclear transport rece 100.0 7E-100 2E-104 864.2 74.0 905 6-1008 1-998 (1010)
3 KOG2023 Nuclear transport rece 100.0 1.2E-88 2.7E-93 736.2 47.5 823 1-1009 3-884 (885)
4 COG5656 SXM1 Importin, protein 100.0 3.3E-77 7.1E-82 654.4 65.3 894 8-1008 2-968 (970)
5 KOG1992 Nuclear export recepto 100.0 5.9E-64 1.3E-68 557.5 72.1 914 6-1009 2-958 (960)
6 COG5657 CSE1 CAS/CSE protein i 100.0 4.1E-64 8.9E-69 567.6 60.2 911 6-1008 1-947 (947)
7 KOG2274 Predicted importin 9 [ 100.0 1.8E-55 3.8E-60 495.1 67.3 894 7-1008 2-1004(1005)
8 KOG2171 Karyopherin (importin) 100.0 6.2E-50 1.3E-54 466.1 68.3 539 6-670 1-554 (1075)
9 KOG1241 Karyopherin (importin) 100.0 9.3E-34 2E-38 315.0 51.5 602 10-731 2-691 (859)
10 COG5215 KAP95 Karyopherin (imp 100.0 6.2E-28 1.3E-32 259.5 52.3 637 7-770 2-732 (858)
11 PF08506 Cse1: Cse1; InterPro 100.0 3.7E-29 8.1E-34 276.2 26.8 311 219-573 50-370 (370)
12 PF03378 CAS_CSE1: CAS/CSE pro 99.9 2.8E-21 6.1E-26 218.0 34.2 397 581-1007 14-435 (435)
13 KOG2022 Nuclear transport rece 99.7 1E-10 2.2E-15 134.5 62.7 601 5-670 3-675 (982)
14 COG5101 CRM1 Importin beta-rel 99.6 7.1E-10 1.5E-14 122.4 58.6 594 6-644 11-672 (1053)
15 KOG2171 Karyopherin (importin) 99.6 5.6E-11 1.2E-15 141.4 42.4 523 19-687 47-616 (1075)
16 KOG2021 Nuclear mRNA export fa 99.4 3E-08 6.5E-13 112.3 43.5 126 11-144 5-141 (980)
17 PF03810 IBN_N: Importin-beta 99.3 2.8E-12 6.1E-17 110.1 7.9 73 29-103 1-76 (77)
18 KOG1824 TATA-binding protein-i 99.1 9E-05 2E-09 86.9 62.5 173 526-713 535-726 (1233)
19 KOG1241 Karyopherin (importin) 99.1 1.1E-06 2.4E-11 100.5 39.2 121 564-687 612-733 (859)
20 KOG2023 Nuclear transport rece 99.0 1.3E-06 2.9E-11 98.1 34.4 348 437-811 106-526 (885)
21 KOG2081 Nuclear transport regu 99.0 8.1E-06 1.8E-10 91.3 39.5 120 27-159 2-124 (559)
22 COG5215 KAP95 Karyopherin (imp 98.8 0.0005 1.1E-08 76.6 49.5 316 484-809 424-834 (858)
23 KOG2020 Nuclear transport rece 98.6 0.0073 1.6E-07 75.0 49.7 145 9-163 10-165 (1041)
24 PF08389 Xpo1: Exportin 1-like 98.2 1.7E-05 3.6E-10 77.6 13.6 58 106-164 1-58 (148)
25 KOG1824 TATA-binding protein-i 98.1 0.056 1.2E-06 64.5 68.2 136 504-645 561-704 (1233)
26 KOG0213 Splicing factor 3b, su 98.1 0.019 4.1E-07 66.4 34.5 284 437-756 815-1116(1172)
27 KOG1242 Protein containing ada 98.0 0.012 2.6E-07 67.5 31.6 290 437-750 33-326 (569)
28 KOG0915 Uncharacterized conser 98.0 0.026 5.6E-07 70.6 36.0 326 478-839 967-1307(1702)
29 KOG1242 Protein containing ada 97.8 0.012 2.6E-07 67.6 26.8 259 513-791 179-445 (569)
30 PTZ00429 beta-adaptin; Provisi 97.8 0.23 4.9E-06 60.9 39.3 149 8-161 34-209 (746)
31 PF10508 Proteasom_PSMB: Prote 97.7 0.016 3.4E-07 68.6 28.6 150 507-665 76-231 (503)
32 KOG0213 Splicing factor 3b, su 97.7 0.031 6.7E-07 64.7 27.7 228 437-687 492-745 (1172)
33 KOG0212 Uncharacterized conser 97.7 0.054 1.2E-06 61.2 28.8 330 485-838 60-406 (675)
34 PF01602 Adaptin_N: Adaptin N 97.4 0.029 6.2E-07 67.5 25.9 219 456-711 76-298 (526)
35 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0009 2E-08 59.3 7.7 76 528-606 3-81 (97)
36 PF05918 API5: Apoptosis inhib 97.3 0.24 5.2E-06 57.8 29.3 294 526-847 37-354 (556)
37 PF10508 Proteasom_PSMB: Prote 97.3 0.69 1.5E-05 54.9 38.2 203 511-732 41-255 (503)
38 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00086 1.9E-08 52.9 5.2 51 526-576 2-55 (55)
39 COG5181 HSH155 U2 snRNP splice 97.1 0.061 1.3E-06 61.1 20.8 265 456-756 643-921 (975)
40 PRK09687 putative lyase; Provi 97.1 0.075 1.6E-06 57.6 21.1 84 480-577 35-119 (280)
41 PF12348 CLASP_N: CLASP N term 96.9 0.017 3.7E-07 60.9 14.6 192 479-684 18-225 (228)
42 KOG0915 Uncharacterized conser 96.9 0.52 1.1E-05 59.6 28.4 142 454-605 1031-1184(1702)
43 KOG2274 Predicted importin 9 [ 96.9 0.6 1.3E-05 56.1 27.0 269 487-770 469-756 (1005)
44 PF01602 Adaptin_N: Adaptin N 96.7 1.4 3.1E-05 52.9 31.0 258 453-748 108-369 (526)
45 PRK09687 putative lyase; Provi 96.7 0.025 5.4E-07 61.3 14.1 139 480-661 140-278 (280)
46 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0066 1.4E-07 53.8 7.8 87 484-576 2-94 (97)
47 KOG0166 Karyopherin (importin) 96.7 0.044 9.6E-07 62.6 16.2 233 511-753 155-398 (514)
48 KOG1240 Protein kinase contain 96.7 0.11 2.3E-06 63.9 19.6 243 483-738 438-714 (1431)
49 COG5181 HSH155 U2 snRNP splice 96.6 0.74 1.6E-05 52.8 24.0 186 437-645 297-494 (975)
50 KOG0212 Uncharacterized conser 96.5 0.52 1.1E-05 53.6 22.3 265 509-792 209-482 (675)
51 PLN03200 cellulose synthase-in 96.5 0.19 4.2E-06 66.9 22.0 330 483-841 419-767 (2102)
52 COG5656 SXM1 Importin, protein 96.4 3.1 6.7E-05 49.2 27.9 287 488-791 480-799 (970)
53 PF13646 HEAT_2: HEAT repeats; 96.3 0.029 6.4E-07 48.9 9.5 76 480-574 12-88 (88)
54 PTZ00429 beta-adaptin; Provisi 96.2 5 0.00011 49.5 35.6 352 437-843 156-512 (746)
55 cd00020 ARM Armadillo/beta-cat 96.1 0.017 3.8E-07 53.5 7.4 95 481-578 20-120 (120)
56 KOG1059 Vesicle coat complex A 96.0 4.7 0.0001 47.6 35.8 198 509-730 145-381 (877)
57 PF13646 HEAT_2: HEAT repeats; 95.9 0.033 7.2E-07 48.6 7.9 72 511-605 2-74 (88)
58 KOG1060 Vesicle coat complex A 95.9 5 0.00011 47.9 26.7 86 480-578 120-209 (968)
59 PF13513 HEAT_EZ: HEAT-like re 95.8 0.007 1.5E-07 47.6 2.8 53 482-537 1-54 (55)
60 PF08167 RIX1: rRNA processing 95.7 0.17 3.7E-06 50.1 12.8 127 510-642 27-163 (165)
61 PF12717 Cnd1: non-SMC mitotic 95.6 0.24 5.3E-06 49.8 13.8 110 483-600 3-112 (178)
62 KOG0166 Karyopherin (importin) 95.5 1.4 3.1E-05 50.7 20.7 313 511-902 112-438 (514)
63 PF03378 CAS_CSE1: CAS/CSE pro 95.5 0.23 5.1E-06 57.1 14.7 157 628-794 20-192 (435)
64 PF12348 CLASP_N: CLASP N term 95.5 0.22 4.9E-06 52.4 13.7 170 559-738 17-195 (228)
65 PF12719 Cnd3: Nuclear condens 95.3 1.9 4.1E-05 47.4 20.6 177 499-688 18-208 (298)
66 KOG1991 Nuclear transport rece 95.3 10 0.00023 46.6 47.0 270 484-771 478-780 (1010)
67 cd00020 ARM Armadillo/beta-cat 95.1 0.048 1E-06 50.5 6.3 105 510-621 9-118 (120)
68 PF10274 ParcG: Parkin co-regu 95.1 0.1 2.2E-06 51.6 8.5 121 547-670 36-169 (183)
69 PF14500 MMS19_N: Dos2-interac 94.9 1.4 3.1E-05 47.1 17.5 224 514-755 5-245 (262)
70 PF12460 MMS19_C: RNAPII trans 94.8 8.6 0.00019 44.5 25.0 194 547-752 187-398 (415)
71 PF02985 HEAT: HEAT repeat; I 94.8 0.047 1E-06 37.1 3.7 30 550-579 1-30 (31)
72 PF05004 IFRD: Interferon-rela 94.2 2.1 4.5E-05 47.2 17.1 179 551-731 45-239 (309)
73 PF14500 MMS19_N: Dos2-interac 93.8 2.4 5.1E-05 45.4 16.2 213 480-712 11-240 (262)
74 COG5096 Vesicle coat complex, 93.5 5.9 0.00013 48.1 20.2 143 481-641 68-211 (757)
75 PLN03200 cellulose synthase-in 93.4 1.9 4.1E-05 58.1 17.3 219 483-713 624-864 (2102)
76 KOG1943 Beta-tubulin folding c 93.3 29 0.00063 43.4 28.4 222 436-687 356-593 (1133)
77 KOG1062 Vesicle coat complex A 92.9 25 0.00054 42.5 23.4 103 456-577 104-207 (866)
78 KOG1410 Nuclear transport rece 92.6 26 0.00057 41.3 45.8 147 9-165 5-162 (1082)
79 KOG1062 Vesicle coat complex A 92.6 30 0.00064 41.9 32.3 92 480-580 82-173 (866)
80 PF10521 DUF2454: Protein of u 92.5 1.8 3.8E-05 47.2 13.2 160 480-645 87-276 (282)
81 KOG1058 Vesicle coat complex C 92.4 21 0.00046 42.7 21.7 188 454-666 129-347 (948)
82 PF13251 DUF4042: Domain of un 92.4 0.88 1.9E-05 45.5 9.6 110 558-669 49-178 (182)
83 KOG4653 Uncharacterized conser 92.3 12 0.00026 45.4 20.0 184 514-712 733-921 (982)
84 PF04826 Arm_2: Armadillo-like 92.0 1.5 3.3E-05 46.6 11.4 143 512-664 16-162 (254)
85 KOG1059 Vesicle coat complex A 91.2 39 0.00085 40.4 23.0 180 482-687 86-266 (877)
86 KOG1061 Vesicle coat complex A 91.0 43 0.00094 40.4 23.2 128 480-618 98-226 (734)
87 smart00802 UME Domain in UVSB 90.6 1.1 2.5E-05 40.4 7.5 89 550-644 12-106 (107)
88 PF08064 UME: UME (NUC010) dom 90.4 1.4 3E-05 40.0 8.1 78 561-644 27-106 (107)
89 PF08167 RIX1: rRNA processing 90.4 5.7 0.00012 39.3 13.1 119 545-669 21-147 (165)
90 PF10521 DUF2454: Protein of u 89.9 2.4 5.2E-05 46.1 11.0 158 529-688 98-276 (282)
91 KOG1020 Sister chromatid cohes 89.8 77 0.0017 41.4 35.1 112 480-607 828-942 (1692)
92 KOG1993 Nuclear transport rece 89.4 58 0.0013 39.5 30.8 271 485-771 504-792 (978)
93 PF05004 IFRD: Interferon-rela 89.2 15 0.00032 40.6 16.4 144 454-604 124-284 (309)
94 KOG1992 Nuclear export recepto 88.7 66 0.0014 39.2 26.7 126 613-749 658-794 (960)
95 PF04826 Arm_2: Armadillo-like 88.5 10 0.00022 40.4 14.0 176 480-670 25-210 (254)
96 KOG4653 Uncharacterized conser 88.4 6 0.00013 47.8 13.1 138 440-591 787-928 (982)
97 PF12717 Cnd1: non-SMC mitotic 88.4 6.4 0.00014 39.5 12.0 91 526-624 3-93 (178)
98 KOG2160 Armadillo/beta-catenin 87.9 10 0.00023 41.4 13.7 142 479-626 94-243 (342)
99 PRK13800 putative oxidoreducta 87.1 1.9 4.1E-05 55.2 9.0 79 480-576 787-865 (897)
100 PF10363 DUF2435: Protein of u 86.8 6 0.00013 34.7 9.2 73 549-626 3-75 (92)
101 KOG2956 CLIP-associating prote 86.7 15 0.00032 41.6 14.1 170 482-669 301-481 (516)
102 PF10274 ParcG: Parkin co-regu 86.3 3 6.5E-05 41.5 7.8 91 586-683 35-130 (183)
103 COG5064 SRP1 Karyopherin (impo 86.3 0.43 9.3E-06 50.8 2.1 135 483-622 300-442 (526)
104 KOG1248 Uncharacterized conser 85.8 1.2E+02 0.0025 38.9 55.2 334 546-920 515-877 (1176)
105 KOG4224 Armadillo repeat prote 85.7 7 0.00015 42.4 10.7 148 511-670 211-368 (550)
106 PF10363 DUF2435: Protein of u 85.4 5.8 0.00013 34.8 8.4 65 513-580 8-74 (92)
107 KOG2160 Armadillo/beta-catenin 85.0 7.5 0.00016 42.5 10.8 155 551-709 126-282 (342)
108 PF11865 DUF3385: Domain of un 84.9 17 0.00037 35.7 12.5 72 592-665 85-157 (160)
109 KOG1943 Beta-tubulin folding c 84.7 1.2E+02 0.0027 38.2 36.7 68 89-160 337-409 (1133)
110 PRK13800 putative oxidoreducta 84.6 6 0.00013 50.7 11.8 81 480-576 754-834 (897)
111 KOG2956 CLIP-associating prote 84.2 21 0.00046 40.4 13.9 150 480-638 342-494 (516)
112 PF02985 HEAT: HEAT repeat; I 83.9 1.4 2.9E-05 29.9 3.0 29 510-541 2-30 (31)
113 PF08161 NUC173: NUC173 domain 83.8 7.6 0.00016 39.6 9.7 94 611-708 17-126 (198)
114 KOG1967 DNA repair/transcripti 83.8 10 0.00023 46.2 12.1 114 484-605 887-1007(1030)
115 KOG0211 Protein phosphatase 2A 82.6 7.6 0.00016 47.6 10.7 132 435-578 532-664 (759)
116 PF12460 MMS19_C: RNAPII trans 81.9 1.1E+02 0.0023 35.5 34.5 365 513-919 4-413 (415)
117 KOG2025 Chromosome condensatio 81.6 1.3E+02 0.0028 36.3 29.9 106 511-626 88-203 (892)
118 smart00802 UME Domain in UVSB 81.4 7 0.00015 35.4 7.5 81 586-670 4-88 (107)
119 KOG2021 Nuclear mRNA export fa 81.3 1.4E+02 0.003 36.3 21.9 96 527-627 209-309 (980)
120 COG5064 SRP1 Karyopherin (impo 79.5 8.2 0.00018 41.5 8.3 96 483-580 172-274 (526)
121 PF11865 DUF3385: Domain of un 79.4 25 0.00055 34.5 11.4 76 544-623 80-157 (160)
122 KOG2213 Apoptosis inhibitor 5/ 78.8 1.2E+02 0.0025 34.0 17.2 52 527-579 40-91 (460)
123 COG5240 SEC21 Vesicle coat com 78.5 17 0.00037 42.0 10.8 126 437-578 429-555 (898)
124 PF08767 CRM1_C: CRM1 C termin 78.4 1.2E+02 0.0025 33.8 20.0 96 614-712 92-197 (319)
125 COG5096 Vesicle coat complex, 78.0 77 0.0017 39.0 16.8 106 480-600 104-211 (757)
126 KOG1240 Protein kinase contain 77.9 13 0.00029 46.7 10.5 139 445-596 602-745 (1431)
127 KOG2022 Nuclear transport rece 77.8 1.9E+02 0.0041 35.9 28.9 110 568-686 528-638 (982)
128 PF12231 Rif1_N: Rap1-interact 77.8 1.3E+02 0.0029 34.1 20.6 241 457-709 37-303 (372)
129 PF08064 UME: UME (NUC010) dom 77.6 16 0.00035 33.1 8.8 91 628-725 5-97 (107)
130 PF00514 Arm: Armadillo/beta-c 77.6 3.9 8.4E-05 29.6 3.9 28 550-577 13-40 (41)
131 KOG1061 Vesicle coat complex A 76.7 1.9E+02 0.0041 35.3 19.5 147 480-641 61-213 (734)
132 KOG1248 Uncharacterized conser 75.0 2.6E+02 0.0055 36.0 56.1 278 526-809 631-918 (1176)
133 PF08767 CRM1_C: CRM1 C termin 74.9 1.4E+02 0.0031 33.0 19.4 129 614-744 47-190 (319)
134 PF11864 DUF3384: Domain of un 74.7 1.8E+02 0.0039 34.2 22.1 253 561-840 2-287 (464)
135 KOG2137 Protein kinase [Signal 73.4 53 0.0011 39.5 13.5 116 502-626 343-461 (700)
136 KOG0168 Putative ubiquitin fus 73.1 1.3E+02 0.0028 37.0 16.4 151 547-710 209-365 (1051)
137 KOG0414 Chromosome condensatio 72.7 65 0.0014 40.9 14.4 129 443-584 297-434 (1251)
138 PF13251 DUF4042: Domain of un 72.5 42 0.00092 33.7 10.9 133 484-624 2-175 (182)
139 PF05804 KAP: Kinesin-associat 72.3 2.5E+02 0.0054 34.7 25.7 382 487-922 268-675 (708)
140 KOG3961 Uncharacterized conser 71.6 23 0.0005 35.8 8.5 135 548-686 113-260 (262)
141 KOG0392 SNF2 family DNA-depend 71.5 26 0.00057 44.4 10.8 108 513-626 821-928 (1549)
142 PF12719 Cnd3: Nuclear condens 71.5 1.5E+02 0.0032 32.5 16.2 143 17-166 35-187 (298)
143 COG5116 RPN2 26S proteasome re 70.9 16 0.00036 42.0 8.3 109 483-606 567-675 (926)
144 COG5240 SEC21 Vesicle coat com 70.9 2.2E+02 0.0048 33.5 29.0 190 482-687 238-442 (898)
145 KOG0567 HEAT repeat-containing 70.6 1.3E+02 0.0028 31.9 13.9 150 518-687 79-261 (289)
146 PF01347 Vitellogenin_N: Lipop 70.3 26 0.00057 43.0 11.1 100 455-574 486-585 (618)
147 KOG2933 Uncharacterized conser 69.6 43 0.00093 36.1 10.5 90 486-580 147-236 (334)
148 KOG0392 SNF2 family DNA-depend 69.5 57 0.0012 41.7 13.0 174 482-668 747-928 (1549)
149 KOG1967 DNA repair/transcripti 69.3 44 0.00096 41.2 11.8 197 549-750 815-1026(1030)
150 KOG0946 ER-Golgi vesicle-tethe 67.7 41 0.00089 40.7 10.9 151 566-730 40-218 (970)
151 PF04118 Dopey_N: Dopey, N-ter 67.2 2E+02 0.0043 31.6 17.2 130 656-792 28-169 (307)
152 KOG1058 Vesicle coat complex C 67.2 3E+02 0.0065 33.6 24.7 77 514-600 105-181 (948)
153 KOG2933 Uncharacterized conser 66.8 83 0.0018 34.0 12.0 175 479-669 99-288 (334)
154 KOG2032 Uncharacterized conser 66.6 59 0.0013 37.3 11.4 121 545-670 254-376 (533)
155 KOG2062 26S proteasome regulat 66.3 45 0.00098 40.0 10.8 153 481-656 532-687 (929)
156 PF14225 MOR2-PAG1_C: Cell mor 66.0 1.9E+02 0.0042 31.0 16.1 143 550-713 112-258 (262)
157 PF01603 B56: Protein phosphat 65.8 1.3E+02 0.0028 34.7 14.7 257 480-754 102-376 (409)
158 COG5218 YCG1 Chromosome conden 65.4 35 0.00077 39.7 9.5 65 512-579 95-162 (885)
159 cd08050 TAF6 TATA Binding Prot 65.1 1.1E+02 0.0023 34.4 13.5 132 549-686 178-318 (343)
160 PF07571 DUF1546: Protein of u 64.6 20 0.00043 31.5 6.0 57 435-498 20-79 (92)
161 KOG0946 ER-Golgi vesicle-tethe 63.9 3.5E+02 0.0076 33.3 30.6 295 438-750 40-401 (970)
162 KOG0414 Chromosome condensatio 61.0 88 0.0019 39.8 12.5 164 480-670 935-1104(1251)
163 PF01603 B56: Protein phosphat 59.6 3.3E+02 0.0071 31.4 19.8 259 546-848 106-380 (409)
164 KOG4500 Rho/Rac GTPase guanine 58.0 1.3E+02 0.0028 34.0 11.8 150 509-666 316-476 (604)
165 PLN03076 ARF guanine nucleotid 57.9 6.9E+02 0.015 34.7 26.0 229 526-757 1198-1498(1780)
166 TIGR02270 conserved hypothetic 57.9 65 0.0014 37.0 10.3 77 480-576 129-205 (410)
167 PF01465 GRIP: GRIP domain; I 57.8 20 0.00044 26.9 4.1 36 89-124 3-38 (46)
168 PF04388 Hamartin: Hamartin pr 56.3 1.3E+02 0.0029 37.0 13.3 73 527-602 84-161 (668)
169 PF13001 Ecm29: Proteasome sta 56.0 1.2E+02 0.0026 36.0 12.6 82 11-104 25-113 (501)
170 KOG1820 Microtubule-associated 55.9 3.7E+02 0.008 33.8 16.7 177 479-670 264-448 (815)
171 smart00638 LPD_N Lipoprotein N 55.1 29 0.00063 42.1 7.5 81 483-574 461-541 (574)
172 PF13001 Ecm29: Proteasome sta 54.0 32 0.00069 40.9 7.3 142 523-671 295-449 (501)
173 smart00185 ARM Armadillo/beta- 53.2 16 0.00035 25.9 3.0 28 550-577 13-40 (41)
174 PF08713 DNA_alkylation: DNA a 53.2 88 0.0019 32.1 9.8 111 459-593 85-196 (213)
175 KOG2549 Transcription initiati 52.6 74 0.0016 37.1 9.3 80 393-497 288-370 (576)
176 PF03224 V-ATPase_H_N: V-ATPas 52.2 3.6E+02 0.0078 29.7 15.7 188 550-779 106-302 (312)
177 PF08506 Cse1: Cse1; InterPro 51.9 2.1E+02 0.0045 32.5 13.0 119 612-736 229-362 (370)
178 TIGR02270 conserved hypothetic 50.8 2.1E+02 0.0046 32.9 12.9 107 19-155 96-202 (410)
179 KOG0211 Protein phosphatase 2A 50.0 6.1E+02 0.013 31.7 30.9 344 416-792 273-627 (759)
180 PF13925 Katanin_con80: con80 49.8 65 0.0014 31.8 7.6 51 113-163 46-101 (164)
181 PF12830 Nipped-B_C: Sister ch 49.5 62 0.0013 32.7 7.6 67 96-163 11-77 (187)
182 PF14664 RICTOR_N: Rapamycin-i 49.1 78 0.0017 35.9 9.1 112 550-665 26-137 (371)
183 KOG4224 Armadillo repeat prote 47.3 2.6E+02 0.0056 30.9 11.8 173 482-665 222-405 (550)
184 smart00755 Grip golgin-97, Ran 47.1 28 0.00062 26.1 3.4 34 90-124 3-36 (46)
185 PF04510 DUF577: Family of unk 47.1 3E+02 0.0065 27.3 16.4 63 93-163 3-70 (174)
186 PF09324 DUF1981: Domain of un 47.1 90 0.0019 27.0 7.1 53 104-156 29-84 (86)
187 KOG0168 Putative ubiquitin fus 46.8 4.2E+02 0.0091 32.9 14.4 153 554-712 172-348 (1051)
188 PF08389 Xpo1: Exportin 1-like 45.7 80 0.0017 30.0 7.6 101 525-626 2-118 (148)
189 KOG1820 Microtubule-associated 45.0 6.6E+02 0.014 31.7 16.5 180 545-738 249-432 (815)
190 KOG4500 Rho/Rac GTPase guanine 44.6 2E+02 0.0043 32.6 10.7 153 548-712 314-478 (604)
191 COG1413 FOG: HEAT repeat [Ener 44.5 1E+02 0.0022 34.3 9.3 80 480-578 55-135 (335)
192 PF12530 DUF3730: Protein of u 44.0 3.9E+02 0.0086 28.0 12.9 130 20-161 12-152 (234)
193 KOG4413 26S proteasome regulat 43.6 4.7E+02 0.01 28.6 13.0 64 511-577 81-156 (524)
194 KOG2137 Protein kinase [Signal 43.5 2.8E+02 0.0061 33.7 12.5 112 485-609 364-480 (700)
195 KOG1020 Sister chromatid cohes 43.2 9.8E+02 0.021 32.1 35.7 112 41-163 813-924 (1692)
196 PF12054 DUF3535: Domain of un 42.0 6.2E+02 0.013 29.5 18.4 199 482-688 101-324 (441)
197 KOG1077 Vesicle coat complex A 41.7 7.4E+02 0.016 30.3 24.3 311 444-807 96-413 (938)
198 PF08146 BP28CT: BP28CT (NUC21 41.4 2E+02 0.0044 27.9 9.5 79 565-645 37-119 (153)
199 KOG2259 Uncharacterized conser 41.2 5.1E+02 0.011 31.3 13.7 64 514-581 379-442 (823)
200 PF10304 DUF2411: Domain of un 41.1 53 0.0011 23.2 3.8 30 547-576 3-33 (36)
201 PF03130 HEAT_PBS: PBS lyase H 40.8 35 0.00075 22.2 2.8 14 527-540 1-14 (27)
202 PF05804 KAP: Kinesin-associat 40.8 8.1E+02 0.017 30.5 21.2 245 483-750 346-609 (708)
203 KOG2259 Uncharacterized conser 39.8 7.6E+02 0.017 29.9 16.2 139 482-640 387-525 (823)
204 KOG1517 Guanine nucleotide bin 39.8 64 0.0014 40.4 6.7 64 514-580 605-673 (1387)
205 KOG1060 Vesicle coat complex A 39.4 8.4E+02 0.018 30.2 26.4 113 513-642 113-229 (968)
206 PF00514 Arm: Armadillo/beta-c 39.2 78 0.0017 22.6 4.8 19 103-121 22-40 (41)
207 PF08569 Mo25: Mo25-like; Int 39.2 1.5E+02 0.0033 33.0 9.2 72 505-580 207-285 (335)
208 KOG4535 HEAT and armadillo rep 39.0 1.4E+02 0.0031 34.1 8.7 119 482-605 498-625 (728)
209 KOG2256 Predicted protein invo 38.6 4.4E+02 0.0096 31.7 12.9 76 695-770 395-477 (661)
210 COG5098 Chromosome condensatio 38.6 5.5E+02 0.012 31.1 13.4 101 479-582 310-419 (1128)
211 COG5101 CRM1 Importin beta-rel 37.9 7.9E+02 0.017 29.5 23.3 110 528-642 500-627 (1053)
212 COG5116 RPN2 26S proteasome re 37.7 2.5E+02 0.0054 33.0 10.4 151 480-653 528-681 (926)
213 cd03568 VHS_STAM VHS domain fa 36.6 2.5E+02 0.0054 27.0 9.1 78 546-626 34-113 (144)
214 PF00790 VHS: VHS domain; Int 35.8 3.4E+02 0.0075 25.8 10.1 80 544-626 37-121 (140)
215 KOG4535 HEAT and armadillo rep 35.7 6.4E+02 0.014 29.2 12.9 143 482-626 447-606 (728)
216 PF11698 V-ATPase_H_C: V-ATPas 35.0 74 0.0016 29.4 4.9 67 509-578 44-115 (119)
217 PF05918 API5: Apoptosis inhib 33.7 7.9E+02 0.017 29.5 14.2 137 8-161 22-163 (556)
218 PF14631 FancD2: Fanconi anaem 32.7 1.3E+03 0.028 31.4 17.5 134 544-687 430-564 (1426)
219 KOG2549 Transcription initiati 32.5 6E+02 0.013 30.0 12.4 128 548-687 206-349 (576)
220 cd03569 VHS_Hrs_Vps27p VHS dom 32.5 3.3E+02 0.0072 26.1 9.2 78 546-626 38-117 (142)
221 KOG2062 26S proteasome regulat 32.3 2.8E+02 0.006 33.8 10.0 109 483-606 570-678 (929)
222 smart00288 VHS Domain present 31.9 3.7E+02 0.0081 25.3 9.4 79 545-626 33-114 (133)
223 PF12765 Cohesin_HEAT: HEAT re 31.2 57 0.0012 23.9 2.9 26 547-572 16-41 (42)
224 PF12333 Ipi1_N: Rix1 complex 31.1 1.8E+02 0.0039 26.1 6.7 56 548-605 10-65 (102)
225 cd03561 VHS VHS domain family; 30.9 3.3E+02 0.0072 25.6 8.9 80 544-626 32-115 (133)
226 KOG1243 Protein kinase [Genera 30.8 93 0.002 37.4 6.0 77 501-580 323-400 (690)
227 KOG1078 Vesicle coat complex C 30.4 3.2E+02 0.007 33.5 10.2 140 431-590 402-541 (865)
228 KOG2032 Uncharacterized conser 30.1 9.4E+02 0.02 28.1 23.1 98 526-626 273-374 (533)
229 PF14225 MOR2-PAG1_C: Cell mor 29.7 5.3E+02 0.012 27.6 11.1 121 490-626 137-257 (262)
230 KOG3961 Uncharacterized conser 28.9 2.6E+02 0.0057 28.5 7.8 92 586-684 111-206 (262)
231 KOG1525 Sister chromatid cohes 28.0 1.6E+03 0.034 30.0 26.3 180 656-847 70-260 (1266)
232 PF12074 DUF3554: Domain of un 27.8 3.7E+02 0.0081 30.0 10.3 112 485-606 4-116 (339)
233 PF04118 Dopey_N: Dopey, N-ter 26.6 8.9E+02 0.019 26.6 17.9 120 586-710 47-168 (307)
234 smart00567 EZ_HEAT E-Z type HE 26.6 91 0.002 20.5 3.1 14 526-539 2-15 (30)
235 smart00638 LPD_N Lipoprotein N 26.2 4.4E+02 0.0096 31.9 11.3 91 480-579 409-510 (574)
236 KOG1822 Uncharacterized conser 24.8 1.1E+03 0.024 32.4 14.3 147 480-632 888-1048(2067)
237 cd08050 TAF6 TATA Binding Prot 24.8 7.9E+02 0.017 27.5 12.0 79 654-732 231-321 (343)
238 KOG0413 Uncharacterized conser 23.5 1E+03 0.023 30.2 12.8 52 527-578 593-645 (1529)
239 cd06561 AlkD_like A new struct 23.5 1.5E+02 0.0033 29.9 5.6 87 480-579 84-171 (197)
240 PF04388 Hamartin: Hamartin pr 23.2 1.2E+03 0.027 28.7 14.1 139 11-184 6-156 (668)
241 COG1413 FOG: HEAT repeat [Ener 22.8 2.6E+02 0.0056 31.0 7.8 80 480-576 161-240 (335)
242 cd03567 VHS_GGA VHS domain fam 22.3 4E+02 0.0087 25.4 7.7 78 546-626 35-119 (139)
243 KOG2256 Predicted protein invo 22.3 9.7E+02 0.021 29.0 12.0 157 436-596 297-471 (661)
244 PF11707 Npa1: Ribosome 60S bi 22.2 7.7E+02 0.017 27.4 11.3 103 649-751 69-190 (330)
245 KOG1949 Uncharacterized conser 21.6 1.1E+03 0.024 28.9 12.1 68 509-579 175-250 (1005)
246 KOG0889 Histone acetyltransfer 21.5 7.3E+02 0.016 36.3 12.3 110 556-669 12-130 (3550)
247 PF13348 Y_phosphatase3C: Tyro 21.3 2.5E+02 0.0054 22.7 5.4 37 971-1008 28-67 (68)
248 KOG1837 Uncharacterized conser 21.0 6.7E+02 0.015 33.6 11.2 104 94-206 1503-1608(1621)
249 cd00870 PI3Ka_III Phosphoinosi 20.8 96 0.0021 30.6 3.3 58 527-598 62-121 (166)
250 PF08146 BP28CT: BP28CT (NUC21 20.4 7.9E+02 0.017 23.8 11.9 25 613-637 40-66 (153)
251 smart00145 PI3Ka Phosphoinosit 20.3 3.1E+02 0.0067 27.6 6.8 59 526-598 59-119 (184)
No 1
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-144 Score=1191.79 Aligned_cols=953 Identities=38% Similarity=0.581 Sum_probs=836.0
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCCHHH
Q 001804 11 IYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGISNEE 90 (1011)
Q Consensus 11 l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~~e~ 90 (1011)
++++|+++.|||+.++|.||+||++||++|||+..|..|+.+.+. +.+|||+|+|||||+|+||||+ +...++++|+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~--dv~vRWmAviyfKNgIdryWR~-~~~~sl~~EE 78 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTN--DVSVRWMAVIYFKNGIDRYWRR-NTKMSLPPEE 78 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccCCcHHHHHHHHHhcccc--ceeeeeehhhhHhcchhHHhhc-CCcccCCHHH
Confidence 678999999999999999999999999999999999999999985 6999999999999999999995 4457799999
Q ss_pred HHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccC----CHHHHhHHHHHHHHHHHHhhccc
Q 001804 91 KVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAA----DVLTSHRIFMILFRTLKELSTKR 166 (1011)
Q Consensus 91 K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~----~~~~~~~al~~L~~v~k~~~~~r 166 (1011)
|++||.+++..+.|++++++.|+|.++++|||.|||.+||+|+|+|++.+++. |...++|.|.++++|+|.++++|
T Consensus 79 K~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~Lat~R 158 (978)
T KOG1993|consen 79 KDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALATKR 158 (978)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999875 88999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHH-HHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCCCCc
Q 001804 167 LTADQRNFAEISSHLFDY-SWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDA 245 (1011)
Q Consensus 167 l~~~~~~l~~i~~~lf~~-l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~~~~ 245 (1011)
+.++|+.|++.++.++++ .+.+|.+++..+++..+ +. .+ + ++--.++++++++|++|+++++|+.++.
T Consensus 159 L~a~rk~F~el~~~I~~~l~~~l~s~lt~~~lq~~s----s~-----~e-a-~~LsalQ~s~~~lk~lRrlvv~G~~~P~ 227 (978)
T KOG1993|consen 159 LLADRKAFYELAPEILTILAPILWSSLTMMFLQSVS----SI-----KE-A-TLLSALQRSYLTLKVLRRLVVFGFQNPS 227 (978)
T ss_pred HhhhhHHHHHHhHHHHHHHHHHHhcchHHHHHHHhh----cc-----hh-H-HHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999995 58888887765554433 21 11 1 2223688899999999999999999887
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCccchhHHHHHhhh
Q 001804 246 KCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNKI 325 (1011)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~~ 325 (1011)
++. -++.+..++..-...+...+....+ ....+.++|.|.+++|++..++++||.+|+..+..+..++|+.+++
T Consensus 228 kse-~~eRl~~F~e~~~~~~~~~~s~~~~-----~vk~di~ek~~i~l~K~l~~l~~rhpfsF~~~~~~~~~l~f~~~yI 301 (978)
T KOG1993|consen 228 KSE-FFERLLQFLELHQRKLLSSLSTGTQ-----SVKSDILEKFCIKLMKVLAFLFNRHPFSFSFYSPCPVKLEFSIDYI 301 (978)
T ss_pred hhh-HHHHHHHHHHHHHHHHHhhcccccc-----hhhhHHHHHHHHHHHHHHHHHhcCCCcccccccccceeeehhhhhh
Confidence 652 1222333333222222222222111 1234567789999999999999999999997656778899999998
Q ss_pred cCC-------CCCccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhhhhhhhhhhhcCCCHHHHHHH
Q 001804 326 TAP-------EPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILL 398 (1011)
Q Consensus 326 ~~~-------~~~~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l 398 (1011)
.+. +++..+|++|++||++.+|.++-+..|++..+.+...+ .++.....++++..+|++.+++..+
T Consensus 302 f~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d-------~~~~~~~~a~~i~~sFl~~~rIt~l 374 (978)
T KOG1993|consen 302 FDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCD-------TKDEHLETAQKIYNSFLTDNRITNL 374 (978)
T ss_pred hcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhccc-------CccccHHHHHHHHHHhcchHHHHHH
Confidence 776 56678999999999999999988777877655554432 3444445578899999999999999
Q ss_pred HHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCC
Q 001804 399 CNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEI 478 (1011)
Q Consensus 399 ~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 478 (1011)
|+.+|.+|+.++++|+|+|.+|||+|+.|+++.+|+|++|||||+++.++++.|++.++|+++.++++..+.++|..+++
T Consensus 375 cd~Lvt~YflLt~~eLEeW~~dPE~~~~Eq~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~ 454 (978)
T KOG1993|consen 375 CDLLVTHYFLLTEEELEEWTQDPEGWVLEQSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTED 454 (978)
T ss_pred HHHHHHHHHhcCHHHHHHHhcChHHhhhhcccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccch
Confidence 99999999999999999999999999999987779999999999999999999999999999999998887654544556
Q ss_pred CchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhc-cCCcchHHHHHHHHHhh
Q 001804 479 TPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS-EIKDDTKRAVYCALIKL 557 (1011)
Q Consensus 479 ~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~-~~~~~~~~~~~~~ll~~ 557 (1011)
.++...|||+|.|+|.+|+.+++.+||+.||.+.++|++...+++++++|||++|++|+|++ +++.+.++.+|.+++++
T Consensus 455 l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnL 534 (978)
T KOG1993|consen 455 LTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNL 534 (978)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHh
Confidence 77899999999999999999999999999999999999999999999999999999999999 68889999999999999
Q ss_pred ccCC-ChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHH
Q 001804 558 LMDK-DLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKL 635 (1011)
Q Consensus 558 L~d~-~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L 635 (1011)
++|+ |++||++|+++++..+|||+|+++.|.||++.+...++++++.++++|+|+.++.+++++|+++++ |.||+..+
T Consensus 535 L~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~i 614 (978)
T KOG1993|consen 535 LQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTI 614 (978)
T ss_pred cCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9986 999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCC
Q 001804 636 VQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMV 715 (1011)
Q Consensus 636 ~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~ 715 (1011)
+++|+.+|+++++++++|++++.++.++|.++|..|..++++++|+|+.|+++++|+|+++.|||++||.+++.+.+.++
T Consensus 615 vq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~ 694 (978)
T KOG1993|consen 615 VQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLT 694 (978)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHhHHHHHHHhchhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHhCCCC
Q 001804 716 PQLLAYFPCLVEIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQ 795 (1011)
Q Consensus 716 ~~l~~lf~~l~~~l~~~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~~~~~ 795 (1011)
|++..|||++.++++.++++++.++.|+++|++++...|++.|+..+++.+..+++++++++...+++++|++++..|-.
T Consensus 695 p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il 774 (978)
T KOG1993|consen 695 PELLLLFPHLLYIIEQSTENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPIL 774 (978)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886533
Q ss_pred chhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChHHHHHHhccchhhHHHhhcCCcchHHHHHHHHHH
Q 001804 796 VPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDI 875 (1011)
Q Consensus 796 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 875 (1011)
...+..++|.+++..+..+ +++| .++..|+.|+||+.+.||+.|..++.. .. +-+.....+++.
T Consensus 775 ~~~~~~~~L~~lf~~I~~~--~~yP---~~~~~yl~vvaRi~l~n~~~~msvlqt---------~~--~~d~~~~~li~~ 838 (978)
T KOG1993|consen 775 GSLLFSPLLSRLFLSIAEN--DKYP---YVMGEYLLVVARISLRNPSLFMSVLQT---------KN--TYDILIAMLIGN 838 (978)
T ss_pred HhhhcchhhHHHHHHHHhC--CCCc---hhHHHHHHHHHHHHhcChHHHHHHHHh---------hh--hHHHHHHHHHHH
Confidence 3455566777777766543 4566 689999999999999999999998743 11 123456789999
Q ss_pred HHHcCCCCCch-hhHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcCCccccccccCCCccccCC-C----C--CCC
Q 001804 876 WLDKVDHVSSV-QKKIFALALSIILTMRLPQVLDKLDQILSVCTSVILGGNDDLAEEESSGDNMSSSK-Y----H--GEG 947 (1011)
Q Consensus 876 W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~l~~l~~i~~~~~~~l~~~~~~~~~~~~~~d~~~~~~-~----~--~~~ 947 (1011)
|...++++.+. +||+.++|++||+++++|.++..|++|++.|.++|.+ ++.| +.||+-.+.. + + .|+
T Consensus 839 WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~~~I~nl~~e~L~e---V~ed--~~g~~~~~~~~d~~~e~~~~~d 913 (978)
T KOG1993|consen 839 WILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVLDSIMNLWFEVLSE---VMED--ANGDATDYHLNDDLSEQGVYED 913 (978)
T ss_pred HHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHHhHHHHHHHHHHHH---Hhhh--ccCchHHHHhhhhhhccccCCc
Confidence 99999999999 9999999999999999999999999999999999955 4422 4454321110 1 1 122
Q ss_pred CCChHHHHHHhhhhCCCccccChHHHHHHHHHHHHHHhCcc-HHHHHhhcCHHHHHHHHHHhhcC
Q 001804 948 TIPSKELRRRQIKFSDPVNQLSLENSVRENLQTCATLHGDS-FNSTMSRMHSSALMQLKQALKMQ 1011 (1011)
Q Consensus 948 ~~~~~~~r~~~~~~~dpv~~~~l~~~~~~~l~~~~~~~g~~-f~~~~~~~~~~~~~~l~~~l~~~ 1011 (1011)
..|.++.|+|++..+||||+|++++|+.++|+.++.++|.+ |+++|++++|++++++|.+|.+|
T Consensus 914 ~tteq~~r~k~l~lkDPVh~vsl~~fi~~~l~~~q~~lG~q~yqq~l~tVnp~lleqlq~fl~~~ 978 (978)
T KOG1993|consen 914 ETTEQDTRHKQLLLKDPVHSVSLRSFIISVLMFLQDALGEQRYQQYLSTVNPELLEQLQMFLSIQ 978 (978)
T ss_pred hhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHHHHHHccC
Confidence 23556888899999999999999999999999999999987 99999999999999999999875
No 2
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-100 Score=864.20 Aligned_cols=905 Identities=18% Similarity=0.287 Sum_probs=714.0
Q ss_pred CCHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccC---
Q 001804 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRD--- 82 (1011)
Q Consensus 6 ~d~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~--- 82 (1011)
||.+.+.+++.+++.+|++.|++||++|++++++|||...|++|+.+.+. +.+|||+|+|||||.|.++|+.+..
T Consensus 1 md~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~--~l~vrqaaaIYlKN~I~~~W~~~~~~g~ 78 (1010)
T KOG1991|consen 1 MDLQSLLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGV--PLPVRQAAAIYLKNKITKSWSSHEAPGR 78 (1010)
T ss_pred CChHHHHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCC--chhHHHHHHHHHHHHHHhcCCccCCCCC
Confidence 78999999999999999999999999999999999999999999999986 6899999999999999999997632
Q ss_pred CCCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHh
Q 001804 83 SVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKEL 162 (1011)
Q Consensus 83 ~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~ 162 (1011)
+..|.+++|+.||++|+.++...+..+|.|+..++..|...|||++||++++.+..++++++....++||.+|++++|.+
T Consensus 79 ~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~y 158 (1010)
T KOG1991|consen 79 PFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTY 158 (1010)
T ss_pred cCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHH
Confidence 45599999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCC
Q 001804 163 STKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFP 242 (1011)
Q Consensus 163 ~~~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~ 242 (1011)
..++ .+.|+++..++..+|| .+++.+.+++..++ .+.++..++ .+|+|++++.+.+|
T Consensus 159 e~k~-~eeR~~l~~~v~~~fP-----------~il~~~~~ll~~~s----~~s~el~kl-------IlKifks~~~~~LP 215 (1010)
T KOG1991|consen 159 EWKK-DEERQPLGEAVEELFP-----------DILQIFNGLLSQES----YQSVELQKL-------ILKIFKSLIYYELP 215 (1010)
T ss_pred hhcc-ccccccHHHHHHHHHH-----------HHHHHHHhhccccc----hHHHHHHHH-------HHHHHHHHHHHhCC
Confidence 8754 5678899999999999 44556665554542 222344444 48999999999999
Q ss_pred CCchhhhhhhhhhhhhHHHHHHHHhhccCcc---cccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCc-cchhH
Q 001804 243 SDAKCIQEVRPVKEVSPLLLNAIQSFLPYYS---SFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCV-LPSVV 318 (1011)
Q Consensus 243 ~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~-l~~~~ 318 (1011)
.... ..+.+..|+..++.++++++|... +++.+...+||++|| |...++.+...||+.++. .+..-
T Consensus 216 ~~L~---~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KK-------Wa~~~L~Rlf~Ryg~~~~~~~~y~ 285 (1010)
T KOG1991|consen 216 LELS---APETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKK-------WALHILNRLFERYGSPSLVVPEYK 285 (1010)
T ss_pred HHhh---CchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHH-------HHHHHHHHHHHHhCCccccchhhH
Confidence 6442 346799999999999999999643 445677789999887 344444444446776542 23455
Q ss_pred HHHHhhhcCCCCCccchHHHHHHHHH-HHHHHhh--cccccCC----CCcccccCcc---ccHHHhhhhhhhhhhhhhhc
Q 001804 319 DFCLNKITAPEPDIFSFEQFLIQCMV-LVKSVLE--CKEYKPS----LTGRVMDDSG---VTLEQMKKNISNVVGGVVSS 388 (1011)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~l~-ll~~~l~--~~~y~~~----~~~~~~~~~~---~~~~~~k~~~~~~~~~~~~~ 388 (1011)
+|...+..+ ++...++ +++.+-. ...|-+. .+..|.++|+ .+|+.+|||+..
T Consensus 286 ~Fa~~f~~n----------~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~-------- 347 (1010)
T KOG1991|consen 286 EFAQMFLKN----------FAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQV-------- 347 (1010)
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHH--------
Confidence 555544433 2222221 2222111 1234432 2334455555 678999998743
Q ss_pred CCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHH-HHH-HHHHcccc----hHHHHHH
Q 001804 389 LLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEAL-YIV-LFENHSQL----LGPVVVS 462 (1011)
Q Consensus 389 ~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~-l~~-l~~~~~~~----l~~~l~~ 462 (1011)
++..+|+|.||+|++|.|.||+||+||+|+. .|.|++..+|..++. |+. ++.+.|+. +++++.+
T Consensus 348 ---------ii~~vIFPlmc~~d~deelwe~DP~EYiR~~-~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~ 417 (1010)
T KOG1991|consen 348 ---------IIQDVIFPLMCFNDEDEELWEEDPYEYIRKK-FDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVD 417 (1010)
T ss_pred ---------HHHHhhhhhcCCCcccHHHHhcCHHHHHHhc-CchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHH
Confidence 5566789999999999999999999999988 677888888888883 444 44445333 3466666
Q ss_pred HHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHH----HHHHhhHhhhccCCCchhHHHHHHHHHHhh
Q 001804 463 ILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDW----FNGALSLDLSNDHPNMHIIHRKVAIILGQW 538 (1011)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~----l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~ 538 (1011)
+++++..+.+ ...+.++||||++++|++++.+.+..+|++. +.+++.|+++++.+ ++|+||||++|+|
T Consensus 418 Il~~~~~~~~-----~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g---~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 418 ILTRYKEASP-----PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYG---YLRARACWVLSQF 489 (1010)
T ss_pred HHHhhcccCC-----CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchh---HHHHHHHHHHHHH
Confidence 6776665322 2467899999999999999988888886554 55666899999988 8999999999999
Q ss_pred hc-cCC-cchHHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHH
Q 001804 539 VS-EIK-DDTKRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVL 615 (1011)
Q Consensus 539 ~~-~~~-~~~~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~ 615 (1011)
++ .++ +..+..+|+++.++|. |+++|||++|+-||+.|+.+.++.++.+.|+++++|+.|++++++++.++ +.
T Consensus 490 ~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~----Lt 565 (1010)
T KOG1991|consen 490 SSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD----LT 565 (1010)
T ss_pred HhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH----HH
Confidence 97 564 6789999999999998 99999999999999999998877778899999999999999999997766 89
Q ss_pred HHHHHHHHhhc-cccchHHHHHHHHHH-HH---hh-------ccccchHHHHHHHHHHHHHHHcCCCCc---chhhhHHH
Q 001804 616 NLISILIGHVS-EVIPYANKLVQFFQK-VW---EE-------SSGESLLQIQLLIALRNFVVALGYQSH---NCYSMLLP 680 (1011)
Q Consensus 616 ~~l~~ii~~~~-ei~p~~~~L~~~L~~-lw---~~-------~~~~~~~~~~~l~~l~~l~~a~~~~~~---~~~~~~~P 680 (1011)
.+|+.+|.+++ |+.||+..|++.|.. .| +. ++|+.+.+.|+|+|+++++.++++.|. .+++.++|
T Consensus 566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l~ 645 (1010)
T KOG1991|consen 566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVLP 645 (1010)
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999 599999999999876 33 32 134689999999999999999999874 46789999
Q ss_pred HHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHh-chhhHHHHHHHHHHHHhcchhhhhhh--
Q 001804 681 ILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMER-SFDHLQVAINIIEGYIILGGTDFLNM-- 757 (1011)
Q Consensus 681 vi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~-~~~~l~~~~~il~~yi~lg~~~~l~~-- 757 (1011)
++..++++ +..+|+++.+++..+++..++.++|.||+++|.++.++.+ +.||+..+++.++||+.+|...++..
T Consensus 646 vi~~iL~~---~i~dfyeE~~ei~~~~t~~~~~Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~~ 722 (1010)
T KOG1991|consen 646 VIGFILKN---DITDFYEELLEIVSSLTFLSKEISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNPD 722 (1010)
T ss_pred HHHHHHHH---hhHHHHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccch
Confidence 99999986 6779999999999999999999999999999999999986 79999999999999999999998863
Q ss_pred hHHHHHHHHHHhhcC--ccchhHhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHH
Q 001804 758 HASCVAKLLDLVVGN--VNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILAR 835 (1011)
Q Consensus 758 ~~~~l~~~~~~~l~~--~~~~~~~~~~~l~e~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~r 835 (1011)
|+..+..++.+++.+ ..+++...+|+++|.++++|++.+.++++.+++..+.++..+ ++.+.+++.++.|+..
T Consensus 723 y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~-----~e~s~~~~~~leVvin 797 (1010)
T KOG1991|consen 723 YLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLTRE-----VETSELRVMLLEVVIN 797 (1010)
T ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhcc-----ccchHHHHHHHHHHHH
Confidence 678889999999854 557778889999999999998877777777777666665332 2234688999999999
Q ss_pred HHHhChHHHHHHhccchhhHHHhhcCCcchHHHHHHHHHHHHHcCCCCCch-hhHHHHHHHHHHhcc-CchHHH-HHHHH
Q 001804 836 ILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTM-RLPQVL-DKLDQ 912 (1011)
Q Consensus 836 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~-~~p~~l-~~l~~ 912 (1011)
++++||..+++.|. +.|. +..||..|+......... +||++++||++|+.+ +.|++. +.+++
T Consensus 798 alyynP~ltL~iLe---------~~~~------~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~ 862 (1010)
T KOG1991|consen 798 ALYYNPKLTLGILE---------NQGF------LNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQ 862 (1010)
T ss_pred HHHcCcHHHHHHHH---------HcCC------cccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHH
Confidence 99999999998764 4553 567999999998888778 999999999999999 455544 56667
Q ss_pred HHHHHHHHhhcCC----------cc--ccccccCCC---ccccCCCC-CC------------------------CCCChH
Q 001804 913 ILSVCTSVILGGN----------DD--LAEEESSGD---NMSSSKYH-GE------------------------GTIPSK 952 (1011)
Q Consensus 913 i~~~~~~~l~~~~----------~~--~~~~~~~~d---~~~~~~~~-~~------------------------~~~~~~ 952 (1011)
++++.+.++.+.- ++ ..++++++| ....+.++ ++ +++..+
T Consensus 863 l~~~lv~L~~~Lp~ala~ra~~~ee~~~e~~~~~~~~~e~~~~d~dD~d~~d~d~~~~~~~~~~~~~~~~~~ddd~d~~~ 942 (1010)
T KOG1991|consen 863 LGPALVELLLSLPEALAERAQVEEEDSEEGEEEDDDEEEDFIDDEDDIDEDDQDYLDEYGELALEKEDSLDDDDDFDEDE 942 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCcchhhccCccccccccchhHHHhhccccccccccccccccccchh
Confidence 7777777664331 11 000000000 01111000 00 000000
Q ss_pred HHHHHhhhhCCCccccChHHHHHHHHHHHHHHhCccHHHHHhhcCHHHHHHHHHHh
Q 001804 953 ELRRRQIKFSDPVNQLSLENSVRENLQTCATLHGDSFNSTMSRMHSSALMQLKQAL 1008 (1011)
Q Consensus 953 ~~r~~~~~~~dpv~~~~l~~~~~~~l~~~~~~~g~~f~~~~~~~~~~~~~~l~~~l 1008 (1011)
..-...-....|+.+++...+|++.+..+++.-.+.|+.++++++|+-++.|+..+
T Consensus 943 ~~~~ed~~f~t~LD~VD~f~~f~~~i~~lq~~d~~~yq~l~~~L~~~q~~~lq~I~ 998 (1010)
T KOG1991|consen 943 LDLEEDELFETPLDQVDPFQLFKEAITNLQSSDAVRYQKLISTLTPEQQDSLQTIL 998 (1010)
T ss_pred ccccccccccCcccccchHHHHHHHHHhhhccChHHHHHHHhcCCHHHHHHHHHHH
Confidence 00011124466889999999999999999875444499999999999999999876
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-88 Score=736.24 Aligned_cols=823 Identities=17% Similarity=0.224 Sum_probs=650.9
Q ss_pred CCCCC--CCHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccc
Q 001804 1 MALSA--SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWR 78 (1011)
Q Consensus 1 m~~~~--~d~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~ 78 (1011)
|.|.| ..++|+.++|+++.|||+++|+.+..+|.++...|+|.+||..|+..... .+..+|++|++.|||+|+-+|.
T Consensus 3 ~~w~p~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~-~d~~~Rs~aGLlLKNnvr~~~~ 81 (885)
T KOG2023|consen 3 MTWQPDEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKS-EDVPTRSLAGLLLKNNVRGHYN 81 (885)
T ss_pred CCCcccHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccchhceeeEEEecccc-cchhHHHHhhhhHhcccccccc
Confidence 67888 34899999999999999999999999999999999999999999998763 4789999999999999999999
Q ss_pred cccCCCCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHH
Q 001804 79 NRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRT 158 (1011)
Q Consensus 79 ~~~~~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v 158 (1011)
+ ++.+.+.+||+.++.++.++++.||...+.+|++|+...+-..||+++|.|.++|.++|.+..+||+.+|.||
T Consensus 82 ~------~~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KI 155 (885)
T KOG2023|consen 82 S------IPSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKI 155 (885)
T ss_pred C------CChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 8 8889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccchhh--HHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHH
Q 001804 159 LKELSTKRLTAD--QRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQL 236 (1011)
Q Consensus 159 ~k~~~~~rl~~~--~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~ 236 (1011)
|++.+. .+..+ .++++.++|.++ ++++ +++| . ++.. +++|++.+
T Consensus 156 cEDsa~-~lds~~~~rpl~~mipkfl---------------~f~~----h~sp-------k----iRs~---A~~cvNq~ 201 (885)
T KOG2023|consen 156 CEDSAQ-FLDSDVLTRPLNIMIPKFL---------------QFFK----HPSP-------K----IRSH---AVGCVNQF 201 (885)
T ss_pred HhhhHH-HHhhhcccCchHHhHHHHH---------------HHHh----CCCh-------h----HHHH---HHhhhhhe
Confidence 998653 33321 356777777554 4454 4432 1 3333 46777766
Q ss_pred HHhcCCCCchhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCccch
Q 001804 237 IISGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPS 316 (1011)
Q Consensus 237 i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~ 316 (1011)
+... -+.+..++++++......+. +....+||.+| +.|+-+++.+|.+..| |+++
T Consensus 202 i~~~-----------------~qal~~~iD~Fle~lFalan---D~~~eVRk~vC---~alv~Llevr~dkl~p--hl~~ 256 (885)
T KOG2023|consen 202 IIIQ-----------------TQALYVHIDKFLEILFALAN---DEDPEVRKNVC---RALVFLLEVRPDKLVP--HLDN 256 (885)
T ss_pred eecC-----------------cHHHHHHHHHHHHHHHHHcc---CCCHHHHHHHH---HHHHHHHHhcHHhccc--chHH
Confidence 5421 12345666666665443332 23456888776 5688889999999998 9999
Q ss_pred hHHHHHhhhcCCCCC-----ccchHHHHHHH----------HHHHHHHhhcccccCCCCcccc-cCccccHHHhhhhhhh
Q 001804 317 VVDFCLNKITAPEPD-----IFSFEQFLIQC----------MVLVKSVLECKEYKPSLTGRVM-DDSGVTLEQMKKNISN 380 (1011)
Q Consensus 317 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------l~ll~~~l~~~~y~~~~~~~~~-~~~~~~~~~~k~~~~~ 380 (1011)
+++||.+..++.+++ |+||..++.+. -.+++.+++.|+|+..+..-.. ++...+.++.
T Consensus 257 IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr------ 330 (885)
T KOG2023|consen 257 IVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR------ 330 (885)
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch------
Confidence 999999988877654 67887665432 1388888999999987654333 2222222221
Q ss_pred hhhhhhhcCCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHH
Q 001804 381 VVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVV 460 (1011)
Q Consensus 381 ~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l 460 (1011)
-+.++..|.+.. . .-+.++.+ ++|.+|...+||+....|++|+|+++.++.++..||+.++|.+
T Consensus 331 -eeDIkPRfhksk----------~---~~~~~~~~--~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l 394 (885)
T KOG2023|consen 331 -EEDIKPRFHKSK----------E---HGNGEDAD--DEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPIL 394 (885)
T ss_pred -hhhccchhhhch----------h---ccCccccc--cccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHH
Confidence 112222222211 0 11111111 1121111112222223469999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh----hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHH
Q 001804 461 VSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE----LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILG 536 (1011)
Q Consensus 461 ~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~----l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg 536 (1011)
+|++++.+. ++.|..|||+++|+|++|+| +.+|++ -+.+++++.|.|..| .||+.+||++|
T Consensus 395 ~PlLk~~L~---------~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp---eLip~l~~~L~DKkp---lVRsITCWTLs 459 (885)
T KOG2023|consen 395 LPLLKEHLS---------SEEWKVREAGVLALGAIAEGCMQGFVPHLP---ELIPFLLSLLDDKKP---LVRSITCWTLS 459 (885)
T ss_pred HHHHHHHcC---------cchhhhhhhhHHHHHHHHHHHhhhcccchH---HHHHHHHHHhccCcc---ceeeeeeeeHh
Confidence 999999986 47899999999999999998 444554 489999999999988 89999999999
Q ss_pred hhhcc-CC---cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHH
Q 001804 537 QWVSE-IK---DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKV 612 (1011)
Q Consensus 537 ~~~~~-~~---~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~ 612 (1011)
||+.. ++ .+++.+++++++..+.|+++.||++||+|+..+.++. .+.+.||++.|+++|..+++.|+.++ ..
T Consensus 460 Rys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A---~~eLVp~l~~IL~~l~~af~kYQ~KN-Ll 535 (885)
T KOG2023|consen 460 RYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEA---GEELVPYLEYILDQLVFAFGKYQKKN-LL 535 (885)
T ss_pred hhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHHhhcc-ee
Confidence 99993 32 3678999999999999999999999999999999985 78999999999999999999999877 45
Q ss_pred HHHHHHHHHHHhhc-cc-cc-hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCC-
Q 001804 613 QVLNLISILIGHVS-EV-IP-YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDI- 688 (1011)
Q Consensus 613 ~l~~~l~~ii~~~~-ei-~p-~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~- 688 (1011)
.+|++|+++++++| .+ .| |.+.|||+|.+.|+.-.|+.---..+|+|+++++.|+|.. |.|+..|++++|++.
T Consensus 536 ILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~g---F~P~~~~Vy~Rc~~il 612 (885)
T KOG2023|consen 536 ILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVG---FLPYAQPVYQRCFRIL 612 (885)
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhcc---ccccCHHHHHHHHHHH
Confidence 59999999999999 55 56 8999999999999975443333345999999999999984 888888998888751
Q ss_pred -----------CCCC----cchhhhhHHHHHHHHHhcCCCCCHHHH---hhHhHHHHHHHhchhhHHHHHHHHHHHHhcc
Q 001804 689 -----------NSPD----ELNLLEDSMLLWEATISHAPVMVPQLL---AYFPCLVEIMERSFDHLQVAINIIEGYIILG 750 (1011)
Q Consensus 689 -----------~~~~----~~~l~e~~l~L~~~l~~~~~~~~~~l~---~lf~~l~~~l~~~~~~l~~~~~il~~yi~lg 750 (1011)
.+|. ..+|+..+|||++++.++.++-.+.|. .+...++.|+++....+|+ ++|+++|
T Consensus 613 ~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQ-----S~FALLG 687 (885)
T KOG2023|consen 613 QKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQ-----SAFALLG 687 (885)
T ss_pred HHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHH-----HHHHHHH
Confidence 1122 168999999999999999887555554 4999999999999999999 9999999
Q ss_pred hhhhhh--hhHHHHHHHHHHhhcCccchhHh----hHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHH
Q 001804 751 GTDFLN--MHASCVAKLLDLVVGNVNDKGLL----IILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTA 824 (1011)
Q Consensus 751 ~~~~l~--~~~~~l~~~~~~~l~~~~~~~~~----~~~~l~e~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 824 (1011)
+-.... ...+++..++..+..+++.+... +.|.++|+.++.. ..+.+++..++..++.++ +. +..+ +.
T Consensus 688 Dltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g-~~~~~~v~~vl~~L~~ii-n~--~~~~--~t 761 (885)
T KOG2023|consen 688 DLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMG-LKMKQYVSPVLEDLITII-NR--QNTP--KT 761 (885)
T ss_pred HHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhc-hhhhhHHHHHHHHHHHHh-cc--cCch--HH
Confidence 987653 23455666665555565554432 3599999999885 557899999999998766 32 2333 46
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHhccchhhHHHhhcCCcchHHHHHHHHHHHHHcCCCCCch-hhHHHHHHHHHHhccCc
Q 001804 825 VKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMRL 903 (1011)
Q Consensus 825 ~~~~~~~vl~rl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~ 903 (1011)
+.+|.++++||+++.+|+.+++ +++.|+..||..+.+++++ ||..++.|+|.++.. |
T Consensus 762 llENtAITIGrLg~~~Pe~vAp---------------------~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~v-N 819 (885)
T KOG2023|consen 762 LLENTAITIGRLGYICPEEVAP---------------------HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINV-N 819 (885)
T ss_pred HHHhhhhhhhhhhccCHHhcch---------------------hHHHHHHHHHHHhcccccchhHHHHHHHHHHheee-C
Confidence 8999999999999999999887 5778999999999999999 999999999999999 8
Q ss_pred hHHH-HHHHHHHHHHHHHhhcCCccccccccCCCccccCCCCCCCCCChHHHHHHhhhhCCCccccChHHHHHHHHHHHH
Q 001804 904 PQVL-DKLDQILSVCTSVILGGNDDLAEEESSGDNMSSSKYHGEGTIPSKELRRRQIKFSDPVNQLSLENSVRENLQTCA 982 (1011)
Q Consensus 904 p~~l-~~l~~i~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~r~~~~~~~dpv~~~~l~~~~~~~l~~~~ 982 (1011)
|... ..+..||.++++ |.++ + -++++.|+..|++++
T Consensus 820 p~~vv~~~~f~c~aiAs---------------------w~np-------~---------------~~l~~~f~kiL~g~k 856 (885)
T KOG2023|consen 820 PSGVVSSFIFICDAIAS---------------------WSNP-------E---------------DDLRDEFYKILQGFK 856 (885)
T ss_pred chhhhhhhHHHHHHHhc---------------------ccCh-------H---------------HHHHHHHHHHHHHHH
Confidence 8765 778888887555 4322 0 259999999999999
Q ss_pred HHhCcc-HHHHHhhcCHHHHHHHHHHhh
Q 001804 983 TLHGDS-FNSTMSRMHSSALMQLKQALK 1009 (1011)
Q Consensus 983 ~~~g~~-f~~~~~~~~~~~~~~l~~~l~ 1009 (1011)
++.|.. |+++..++||...++|+.+-+
T Consensus 857 ~qvg~~nW~~~~~qf~P~~~erl~a~y~ 884 (885)
T KOG2023|consen 857 NQVGKINWQRFSEQFPPPLKERLQAFYG 884 (885)
T ss_pred HHhhhhhHHHHhhcCChhHHHHHHHHhC
Confidence 999975 999999999999999998643
No 4
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-77 Score=654.45 Aligned_cols=894 Identities=16% Similarity=0.227 Sum_probs=658.0
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccC---CC
Q 001804 8 LPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRD---SV 84 (1011)
Q Consensus 8 ~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~---~~ 84 (1011)
.+++++++.++++.|+++|+.||++|++++++|||..+|++|+++++. +.+||+.|+|||||.|.|.|++..+ ..
T Consensus 2 ~~ellqcf~qTldada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~--~lnvklsAaIYfKNkI~rsWss~~d~~i~~ 79 (970)
T COG5656 2 REELLQCFLQTLDADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEG--DLNVKLSAAIYFKNKIIRSWSSKRDDGIKA 79 (970)
T ss_pred hHHHHHHHHHHhccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccC--CchhhHHHHHHHhhhhhhhhhhcccCCCCC
Confidence 468999999999999999999999999999999999999999999986 6899999999999999999997432 12
Q ss_pred CCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhh
Q 001804 85 GISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYP-REWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELS 163 (1011)
Q Consensus 85 ~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P-~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~ 163 (1011)
-..++.|++++++++..+..++...|+++-.+...|...||| +.|| ++|...+++.+++..+++.+|.++++++|.+.
T Consensus 80 Dek~e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg-l~p~~~nll~s~ea~~vy~gLlcl~elfkayR 158 (970)
T COG5656 80 DEKSEAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG-LFPKAANLLRSSEANHVYTGLLCLEELFKAYR 158 (970)
T ss_pred cccHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc-cchHHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence 244555666666666666668889999999999999999999 9999 99999999999999999999999999999977
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCCC
Q 001804 164 TKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPS 243 (1011)
Q Consensus 164 ~~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~~ 243 (1011)
. +....|+....++.++||.+.++. +.+....+ ...+++++ +.+|++++.+.+.+|.
T Consensus 159 w-k~ndeq~di~~li~alfpile~~g-----------~nl~s~~n----y~s~e~l~-------LILk~fKsvcy~~LP~ 215 (970)
T COG5656 159 W-KYNDEQVDILMLITALFPILEKVG-----------GNLESQGN----YGSVETLM-------LILKSFKSVCYYSLPD 215 (970)
T ss_pred h-hccchHhhHHHHHHHhhHHHHHHh-----------hccccCCc----hhHHHHHH-------HHHHHHHHHHHhhCCH
Confidence 5 455667778889999999654433 32221111 11233444 4599999999999997
Q ss_pred CchhhhhhhhhhhhhHHHHHHHHhhccCcc---cccCCChhhHHHHHH-HHHHHHHHHHHHHhcCCCcccccCccchhHH
Q 001804 244 DAKCIQEVRPVKEVSPLLLNAIQSFLPYYS---SFQKGHPKFWEFTKR-ACTKLMKVLVAIQGRHPYTFGDKCVLPSVVD 319 (1011)
Q Consensus 244 ~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~k-~~~~~~k~~~~~~~~~p~~f~~~~~l~~~~~ 319 (1011)
.. ...+.+.+|++.++.++++++|... +++.+..++|-++|| +...+.|.+.+ |+.+++......
T Consensus 216 ~l---sa~e~f~sw~ql~l~i~qkplp~evlsldpevRs~~~wvKckKWa~ynLyR~fqR--------y~k~s~~~~y~~ 284 (970)
T COG5656 216 FL---SAIETFSSWFQLSLRILQKPLPNEVLSLDPEVRSLSKWVKCKKWAAYNLYRSFQR--------YIKKSYKKSYLS 284 (970)
T ss_pred HH---ccchhhHHHHHHHHHHHcCCCCHHHhccChhhccccchhhhhHHHHHHHHHHHHH--------hcchhHHHHHHH
Confidence 54 3457899999999999999998743 344556678888888 56666665553 332211111112
Q ss_pred HHHhhhcCCCCCccchHHHHHHHH-HHHHHHhhccc---ccCC----CCcccccCcc---ccHHHhhhhhhhhhhhhhhc
Q 001804 320 FCLNKITAPEPDIFSFEQFLIQCM-VLVKSVLECKE---YKPS----LTGRVMDDSG---VTLEQMKKNISNVVGGVVSS 388 (1011)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~l-~ll~~~l~~~~---y~~~----~~~~~~~~~~---~~~~~~k~~~~~~~~~~~~~ 388 (1011)
|...+++ +..+.+ .+++.+-.... |-.+ .+..+..+|+ .+|+.++||..
T Consensus 285 f~~~f~t-----------~vp~il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l~ePhlq--------- 344 (970)
T COG5656 285 FYITFMT-----------RVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRLMEPHLQ--------- 344 (970)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhhHhhHhhhccHHH---------
Confidence 2111110 000100 02222211000 1110 0111222333 36777777754
Q ss_pred CCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHH-HHHHHHH-cccc----hHHHHHH
Q 001804 389 LLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEAL-YIVLFEN-HSQL----LGPVVVS 462 (1011)
Q Consensus 389 ~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~-l~~l~~~-~~~~----l~~~l~~ 462 (1011)
-+++.+|+|.+|++++++|.||+||+||+|+. .|.|....||..+++ |+.++.. .++. +++++..
T Consensus 345 --------~ii~~vIfPllc~see~eElfEnDp~eyirry-~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~s 415 (970)
T COG5656 345 --------YIISGVIFPLLCLSEEEEELFENDPDEYIRRY-YDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLS 415 (970)
T ss_pred --------HHHHhhhhhhcCCChhhHHHHhcCHHHHHHHh-cchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHH
Confidence 35666889999999999999999999999987 677888899998884 5554433 3443 4566666
Q ss_pred HHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChH----HHHHHHhhHhhhccCCCchhHHHHHHHHHHhh
Q 001804 463 ILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFK----DWFNGALSLDLSNDHPNMHIIHRKVAIILGQW 538 (1011)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~----~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~ 538 (1011)
++.++..+ | .+..+.+++|||++.++++..-+.+..++. .++.++++|.++++.. +||+|||.+++++
T Consensus 416 il~qsaa~-p----sn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~yg---fL~Srace~is~~ 487 (970)
T COG5656 416 ILGQSAAT-P----SNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYG---FLKSRACEFISTI 487 (970)
T ss_pred HHhcccCC-C----CccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCccc---chHHHHHHHHHHH
Confidence 66665542 2 123568999999999999998666666654 4456667899999887 9999999999999
Q ss_pred hccCC-cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 001804 539 VSEIK-DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNL 617 (1011)
Q Consensus 539 ~~~~~-~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~ 617 (1011)
...++ +.....+|+++.+||+++++||+++||.|++.|+-+.. ..+.+..++|++|+.|+.|.+.++.+- +..+
T Consensus 488 eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sahVp~tmekLLsLSn~feiD~----LS~v 562 (970)
T COG5656 488 EEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSAHVPETMEKLLSLSNTFEIDP----LSMV 562 (970)
T ss_pred HHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHhhhhHHHHHHHHhcccccchH----HHHH
Confidence 76665 56789999999999999999999999999999997654 456899999999999999999995433 7899
Q ss_pred HHHHHHhhc-cccchHHHHHHHHHH----HH----hhc-------cccchHHHHHHHHHHHHHHHcCCCCcc---hhhhH
Q 001804 618 ISILIGHVS-EVIPYANKLVQFFQK----VW----EES-------SGESLLQIQLLIALRNFVVALGYQSHN---CYSML 678 (1011)
Q Consensus 618 l~~ii~~~~-ei~p~~~~L~~~L~~----lw----~~~-------~~~~~~~~~~l~~l~~l~~a~~~~~~~---~~~~~ 678 (1011)
|+.+|+++. |+.||+.+|+..|.+ +. +++ +|+.|.+.|+|+++++++.++++.|.. ++..+
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sl 642 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSL 642 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999 599999999988766 22 222 467899999999999999999998743 45679
Q ss_pred HHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHhc--hhhHHHHHHHHHHHHhcchhhhhh
Q 001804 679 LPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMERS--FDHLQVAINIIEGYIILGGTDFLN 756 (1011)
Q Consensus 679 ~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~~--~~~l~~~~~il~~yi~lg~~~~l~ 756 (1011)
.|++.+++.+ +..+|+.+++|++.+.+..++.++|-+|.+|+.+.+++.+. .+|+......+++++.+|..+|.+
T Consensus 643 ypvi~Filkn---~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~ 719 (970)
T COG5656 643 YPVISFILKN---EISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMD 719 (970)
T ss_pred HHHHHHHHhh---hHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccc
Confidence 9999999986 67899999999999999999999999999999999999763 399999999999999999999986
Q ss_pred h--hHHHHHHHHHHhhcCcc--chhHhhHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 001804 757 M--HASCVAKLLDLVVGNVN--DKGLLIILPVIDMLIQCFPIQ-VPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAA 831 (1011)
Q Consensus 757 ~--~~~~l~~~~~~~l~~~~--~~~~~~~~~l~e~ll~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1011)
. ++.-+..+....+..-. -+++..+|+++|.++.+.+++ ..++++.+....-.++.. .++.. ...+.++.
T Consensus 720 ~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~-~dElg----~~sv~ale 794 (970)
T COG5656 720 AGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKM-IDELG----PASVYALE 794 (970)
T ss_pred ccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhc-ccccc----chhhhHHH
Confidence 3 66667777777775322 267889999999999998763 356666433333323322 12222 34567788
Q ss_pred HHHHHHHhChHHHHHHhccchhhHHHhhcCCcchHHHHHHHHHHHHHcCCCCCch-hhHHHHHHHHHHhccC----chHH
Q 001804 832 ILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMR----LPQV 906 (1011)
Q Consensus 832 vl~rl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~----~p~~ 906 (1011)
++...++++|-..+++|. +.| .+..||..|++..++|+++ +||++.+|+.+++..+ +|+.
T Consensus 795 liinnli~~P~eTLqiLe---------~qg------~l~~FF~~wf~~ipkfkrvhdkKLsvlaIltii~l~~v~~~~e~ 859 (970)
T COG5656 795 LIINNLILRPKETLQILE---------EQG------YLQSFFEKWFSQIPKFKRVHDKKLSVLAILTIIRLQEVGALPEL 859 (970)
T ss_pred HHHHHHhcChHHHHHHHH---------HcC------cHHHHHHHHHhcCcchhhhhhhHhHHHHHHHHHHhcccccchhh
Confidence 888999999998888764 455 5888999999999999999 9999999999999886 2332
Q ss_pred H-HHHHHHHHHHHHHh----hcCCccccccc-cCCCccccCCC-CCCCCCChHHHHHHhhhhCCCc-----cccChHHHH
Q 001804 907 L-DKLDQILSVCTSVI----LGGNDDLAEEE-SSGDNMSSSKY-HGEGTIPSKELRRRQIKFSDPV-----NQLSLENSV 974 (1011)
Q Consensus 907 l-~~l~~i~~~~~~~l----~~~~~~~~~~~-~~~d~~~~~~~-~~~~~~~~~~~r~~~~~~~dpv-----~~~~l~~~~ 974 (1011)
+ .+++.++...+.-| ....++-++++ ..+|...-+.+ -|.+... ..-....||. .+++...+|
T Consensus 860 lv~nLg~vlv~l~~sLPeAir~rake~d~e~f~e~dlt~ey~e~vD~~D~~-----etfileEDplfeT~LDqvdpf~~f 934 (970)
T COG5656 860 LVHNLGEVLVALVTSLPEAIRLRAKEKDDEDFPEPDLTTEYDECVDASDIS-----ETFILEEDPLFETELDQVDPFGYF 934 (970)
T ss_pred hhhHHHHHHHHHHHhhHHHHHHHHhhcccCCCCCcccchhhhccccccchh-----hhhhhcccchhhhhhhhcchHHHH
Confidence 2 34443333332222 11111111111 01121000000 0000001 1111445565 577899999
Q ss_pred HHHHHHHHHHhCccHHHHHhhcCHHHHHHHHHHh
Q 001804 975 RENLQTCATLHGDSFNSTMSRMHSSALMQLKQAL 1008 (1011)
Q Consensus 975 ~~~l~~~~~~~g~~f~~~~~~~~~~~~~~l~~~l 1008 (1011)
++.+..++..-|+.++.++++++++-++.|+..|
T Consensus 935 ~ef~~nLq~~s~~~yekIi~~Lt~s~qdslq~il 968 (970)
T COG5656 935 SEFLSNLQPASGTYYEKIISTLTDSQQDSLQTIL 968 (970)
T ss_pred HHHHHhCCCCCchhHHHHHHhcCHHHHHHHHHHh
Confidence 9999999987777799999999999999999876
No 5
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-64 Score=557.52 Aligned_cols=914 Identities=17% Similarity=0.236 Sum_probs=684.6
Q ss_pred CCHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCC-C
Q 001804 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDS-V 84 (1011)
Q Consensus 6 ~d~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~-~ 84 (1011)
.|.++|.+.|.++++||+++||.||..|++++.++||...|++++.+.+. |..+|-+|+++|||+|+|+|....+. .
T Consensus 2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~--d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQ--DPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCc--ChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 36788999999999999999999999999999999999999999999985 79999999999999999999976554 6
Q ss_pred CCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhhc
Q 001804 85 GISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELST 164 (1011)
Q Consensus 85 ~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~ 164 (1011)
.+.+++|+.||+.++.++.+.+..|..|++++++.|+++|||+.||+|+|+|+..++++|.++..+.|.+.+.++|.++.
T Consensus 80 ~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ 159 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRP 159 (960)
T ss_pred ccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCc
Confidence 79999999999999999999999999999999999999999999999999999999999999889999999999998764
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q 001804 165 KRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSD 244 (1011)
Q Consensus 165 ~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~~~ 244 (1011)
..++...+.+|.-.+-.+. ..+..+|.+...-.... ...+..++.++...+++.|+++++...++|++
T Consensus 160 --efrSdaL~~EIK~vLd~f~--------~Plt~Lf~~t~~l~~~~--~~~~~~l~~lf~vlll~~klfysLn~QDiPEF 227 (960)
T KOG1992|consen 160 --EFRSDALWLEIKLVLDRFA--------EPLTDLFRKTMELIQRH--ANDAAALNILFGVLLLICKLFYSLNFQDIPEF 227 (960)
T ss_pred --ccccHHHHHHHHHHHHhhH--------hHHHHHHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 3355556666655443211 12222222211110000 11223566677777889999999999999998
Q ss_pred chhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCccchhHHHHHhh
Q 001804 245 AKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNK 324 (1011)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~ 324 (1011)
+++ .+..||+.|+..++.--|.... ++.+...-.++|..||.+..++. .+++.-|.+ ++++++...++.
T Consensus 228 FEd-----nm~~wM~~F~k~l~~~~p~le~-~~ee~~~l~~lka~ICEi~~LY~---~kYeEef~~--fl~~fv~~~W~L 296 (960)
T KOG1992|consen 228 FED-----NMKTWMGAFHKLLTYDNPLLES-DEEEATVLDKLKAQICEIFNLYA---TKYEEEFQP--FLPDFVTATWNL 296 (960)
T ss_pred HHh-----hHHHHHHHHHHHHhccCccccc-CcccccHHHHHHHHHHHHHHHHH---HhhHHHHHh--hHHHHHHHHHHH
Confidence 875 5789999999999876666554 34455667777777776655544 577888887 888888877777
Q ss_pred hcCCCCCccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhhhhhhhhhhhcCCCHHHHHHHHHHHHH
Q 001804 325 ITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIR 404 (1011)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~ 404 (1011)
..+..+ ..-|+.+...++.|+.++.+...|.. -|-.++.+.++|+.++.
T Consensus 297 L~~~s~-~~kyD~Lvs~Al~FLt~V~~r~~y~~------------------------------~F~~~~vl~~i~e~Vvl 345 (960)
T KOG1992|consen 297 LVSTSP-DTKYDYLVSKALQFLTSVSRRPHYAE------------------------------LFEGENVLAQICEKVVL 345 (960)
T ss_pred HHhcCC-CccHHHHHHHHHHHHHHHHhhhhhHh------------------------------hhcchHHHHHHHHhhcc
Confidence 655332 24678888899999999876332211 13446788899999999
Q ss_pred hcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHH
Q 001804 405 RYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLL 484 (1011)
Q Consensus 405 ~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 484 (1011)
|.++++++|.|.+||||.||+|+|-.++.-++.|..+..++..|+++|...+.+++-..++..+.+.. ++.+.+|+.
T Consensus 346 pN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~---~nPS~nWk~ 422 (960)
T KOG1992|consen 346 PNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYS---KNPSGNWKK 422 (960)
T ss_pred cccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc---cCCCccccc
Confidence 99999999999999999999987733333345566666688889999987666665555444433111 022468999
Q ss_pred HHHHHHHHHhhhHh----------hcCCCChHHHHHHHhhHhhhccC-CCchhHHHHHHHHHHhhhccCCcchHHHHHHH
Q 001804 485 KDAAYGAAAYVYYE----------LSNYLSFKDWFNGALSLDLSNDH-PNMHIIHRKVAIILGQWVSEIKDDTKRAVYCA 553 (1011)
Q Consensus 485 keA~l~alg~~a~~----------l~~~~~~~~~l~~~ll~~l~~~~-~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ 553 (1011)
||.+++.+-++|-. ..+.+|..+|+...++|+|.+++ ..+|+||+.++-.+--|.+.++++..-.+++.
T Consensus 423 kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~ 502 (960)
T KOG1992|consen 423 KDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPR 502 (960)
T ss_pred cchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHH
Confidence 99999888877633 23457888889999999999843 34569999999999999888899999999999
Q ss_pred HHhhccCCChHHHHHHHHHHHHhh--hhc----CCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc
Q 001804 554 LIKLLMDKDLSVRLAACRSLCSHI--EDA----NFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE 627 (1011)
Q Consensus 554 ll~~L~d~~~~Vr~~A~~aL~~~~--~~~----~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e 627 (1011)
++..|..+..+|..+||.|+..+. ++. -|.++.+.||+..++.+|++.++.-+..|+.. ++.+|-.++.-..+
T Consensus 503 li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Eney-lmKaImRii~i~~~ 581 (960)
T KOG1992|consen 503 LIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEY-LMKAIMRIISILQS 581 (960)
T ss_pred HHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHH-HHHHHHHHHHhCHH
Confidence 999999889999999999999874 222 46788999999999999998887665555444 88888888877775
Q ss_pred -ccchHHHHHHHHHH-HHhhcc--ccchHHHHHHHHHHHHHHHcCCCC----cchhhhHHHHHHhhcCCCCCCcchhhhh
Q 001804 628 -VIPYANKLVQFFQK-VWEESS--GESLLQIQLLIALRNFVVALGYQS----HNCYSMLLPILRRGIDINSPDELNLLED 699 (1011)
Q Consensus 628 -i~p~~~~L~~~L~~-lw~~~~--~~~~~~~~~l~~l~~l~~a~~~~~----~~~~~~~~Pvi~~~l~~~~~~~~~l~e~ 699 (1011)
+.|++..+++.|.+ +|+.+. .++..-.-++|+++-++...+... ..+...++|+++.++.. +..+|+..
T Consensus 582 ~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~e---DI~EfiPY 658 (960)
T KOG1992|consen 582 AIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSE---DIQEFIPY 658 (960)
T ss_pred hhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 88999999999988 454433 244555557899999988887754 34678899999999975 78899999
Q ss_pred HHHHHHHHHhcCC-CCCHHHHhhHhHHH-HHHHhchhhHHHHHHHHHHHHhcchhhhhhh-hHHHHHHHHHHhhcC-ccc
Q 001804 700 SMLLWEATISHAP-VMVPQLLAYFPCLV-EIMERSFDHLQVAINIIEGYIILGGTDFLNM-HASCVAKLLDLVVGN-VND 775 (1011)
Q Consensus 700 ~l~L~~~l~~~~~-~~~~~l~~lf~~l~-~~l~~~~~~l~~~~~il~~yi~lg~~~~l~~-~~~~l~~~~~~~l~~-~~~ 775 (1011)
++.+++.++..+. ++++..+.+||.++ +-+++...+++.+.+.+++|+..|++.+-+. ...++..++.+++.. .+|
T Consensus 659 vfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D 738 (960)
T KOG1992|consen 659 VFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND 738 (960)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc
Confidence 9999999999875 58889999998765 6678889999999999999999999998753 578999999999863 222
Q ss_pred hhHhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChH-HHHHHhccchh
Q 001804 776 KGLLIILPVIDMLIQCFPI-QVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNAN-YLAQLTSEPSL 853 (1011)
Q Consensus 776 ~~~~~~~~l~e~ll~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~-~~~~~l~~~~~ 853 (1011)
. ....+++.++...+. .+.|++..++..++.++.+ .+.+ -+...+...+++..+.... .+++...+.
T Consensus 739 h---~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqn---skT~---kf~k~~~vF~~~~~ik~~~~~l~e~~d~I-- 807 (960)
T KOG1992|consen 739 H---HGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQN---SKTE---KFVKSFIVFFSLFTIKKGGLMLAEVIDGI-- 807 (960)
T ss_pred h---hHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhc---cCcH---HHHHHHHHHHHHHHHHhhhHHHHHHHhhc--
Confidence 1 133478888888753 5678888887777777633 2333 2444555566666654433 445544332
Q ss_pred hHHHhhcCCcchHHHHHHHH-HHHHHcCCCCCch-hhHHHHHHHHHHhccCchHHH-----HHHHHHHHHHHHHhhcCCc
Q 001804 854 SLLLQQAGIPIEENMLLSLV-DIWLDKVDHVSSV-QKKIFALALSIILTMRLPQVL-----DKLDQILSVCTSVILGGND 926 (1011)
Q Consensus 854 ~~~~~~~~~~~~~~~l~~~~-~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~l-----~~l~~i~~~~~~~l~~~~~ 926 (1011)
+.+.+..++ .-|+..+..+... +||+.++|.+.++.. .|..+ ..++.++..++.++....+
T Consensus 808 -----------Q~~~fg~l~e~~ii~~l~~i~~~~~rk~~avg~~~l~~e-~~~~~d~~y~~l~~~ll~sii~lfe~p~~ 875 (960)
T KOG1992|consen 808 -----------QPGMFGMLLENFIIPELPKIILRVDRKIMAVGATGLLTE-TPELLDQKYAKLWGPLLFSIIVLFELPSE 875 (960)
T ss_pred -----------chhHHHHHHHHhccccchhhhhhhhHHHHHHHHhhhhhh-cHHhhhHHHHhhhhhHHHHHHHHHhCChh
Confidence 133556665 4577788888777 999999999999986 56544 3345666666665522111
Q ss_pred ccc-ccc-cCCCccccCCCCCCCCCChHHHHHHhhhhCCCcccc-ChHHHHHHHHHHHHHHhCccHHHHHhh-cCHHHHH
Q 001804 927 DLA-EEE-SSGDNMSSSKYHGEGTIPSKELRRRQIKFSDPVNQL-SLENSVRENLQTCATLHGDSFNSTMSR-MHSSALM 1002 (1011)
Q Consensus 927 ~~~-~~~-~~~d~~~~~~~~~~~~~~~~~~r~~~~~~~dpv~~~-~l~~~~~~~l~~~~~~~g~~f~~~~~~-~~~~~~~ 1002 (1011)
... +++ +..+ + .+.++|....-..-...-...||+-.+ +.+.|+.+-++.+.+..||+|.+.+++ ++|+.+.
T Consensus 876 ~~~~~e~~e~~~-i---~e~~~f~~~F~~L~~a~~k~~Dpl~~i~~~k~y~a~sl~~~~~~~~g~~~~~i~~~l~~e~q~ 951 (960)
T KOG1992|consen 876 RTVLDEEEEMAE-I---EEDPGFQAAFSRLAYAGKKPHDPLAQIKDPKQYLAQSLNKLSTASPGRFPQTISTSLPPENQT 951 (960)
T ss_pred hhccCchhhhhh-h---hcccchhHHHHHHHcCCCCCCCchhhhhhHHHHHHHHHHHHhhcCCCCchhhhcccCCHHHHH
Confidence 111 010 1000 0 000011000001111223568999644 799999999999999988899999987 9999999
Q ss_pred HHHHHhh
Q 001804 1003 QLKQALK 1009 (1011)
Q Consensus 1003 ~l~~~l~ 1009 (1011)
.|++++.
T Consensus 952 ~Lq~~~~ 958 (960)
T KOG1992|consen 952 YLQSYLQ 958 (960)
T ss_pred HHHHHhh
Confidence 9999874
No 6
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=100.00 E-value=4.1e-64 Score=567.55 Aligned_cols=911 Identities=19% Similarity=0.246 Sum_probs=637.1
Q ss_pred CCHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCC
Q 001804 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVG 85 (1011)
Q Consensus 6 ~d~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~ 85 (1011)
|+.-.+...+..+.|+|+..+|.||++|++|++++||..-|.+|+.+.+. +.++||.|+|+|||+|++||++.. ...
T Consensus 1 M~~~~vv~~~~~aqs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~--~m~lR~~a~i~fkn~I~~~W~~~~-~~~ 77 (947)
T COG5657 1 MEDLPVVKQLDLAQSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFN--SMSLRWAALIQFKNYIDKHWREEN-GNS 77 (947)
T ss_pred CCchHHHHHHHhhcCCCCchHhhHHHHHHhhhccccHHHHHHHHHhcccc--chhHHHHHHHHHHhhHHHHhhhhc-ccC
Confidence 34445666678889999999999999999999999999999999999875 799999999999999999999644 345
Q ss_pred CCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhhcc
Q 001804 86 ISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTK 165 (1011)
Q Consensus 86 i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~~ 165 (1011)
+.++++..||..++.++.+.++.+..|+|.+++.|||.|||.+||+|+|+|...+++.|..+..+.+.++++|+|++.
T Consensus 78 i~p~e~v~IR~~l~~lii~s~n~l~iq~a~avs~IA~~DfPdeWpTL~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~~r-- 155 (947)
T COG5657 78 ILPDENVLIRDELFSLIISSSNQLQIQNALAVSRIARLDFPDEWPTLVPDLLSLLSEKDMVTNENSLRVLHHIFKRLR-- 155 (947)
T ss_pred CCCccchHHHHHHHHHHHcccchHHHHHHHHHHHHHhccCcccchhHHHHHHhhhcccchHHHHHHHHHHHHHHHHHh--
Confidence 888888899999999999999999999999999999999999999999999999999998889999999999999987
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCCCCc
Q 001804 166 RLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDA 245 (1011)
Q Consensus 166 rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~~~~ 245 (1011)
|+.+.+..|.+++|.+.+++.....+..+.+.... + . ++ ..+. .++ .|+|.+|+....|+.+..
T Consensus 156 ~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~-----~-~----~~--~lls-lfq---v~L~~~r~~~~~~~qdi~ 219 (947)
T COG5657 156 RLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSE-----N-L----DE--SLLS-LFQ---VCLKLIRRYYDLGFQDIP 219 (947)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhh-----c-c----hh--hHHH-HHH---HHHHHHHHHHHhcCCChh
Confidence 78889999999999999887765554433221111 0 0 11 1111 122 379999999988887643
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCccchhHHHHHhhh
Q 001804 246 KCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNKI 325 (1011)
Q Consensus 246 ~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~~ 325 (1011)
+... +.+..|+..|...+.-.-+.... +..+....-+++..+| ..+..+-.++|..+.+ ++-+.++..++..
T Consensus 220 eFfE--d~l~~~m~~F~klls~~~~~lq~-~~le~~~~~~l~~~i~---e~f~ly~t~yp~~it~--li~dfv~~vw~~l 291 (947)
T COG5657 220 EFFE--DNLDKFMEHFCKLLSYSNPVLQK-DCLEDCVYFKLKGSIC---EIFNLYTTKYPEVITY--LIYDFVEIVWNLL 291 (947)
T ss_pred HHHH--HHHHHHHHHHHHHHhhcchhhhh-hhcccceeeeecccHH---HHHHHHhhccHHHhhH--HHHHHHHHHHHHH
Confidence 2211 23455555555544422121111 1000011112222223 3333334566666654 3334444444444
Q ss_pred cCCCCCccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhhhhhhhhhhhcCCCHHHHHHHHHHHHHh
Q 001804 326 TAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRR 405 (1011)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~~ 405 (1011)
++-.+ ...++.+....+.++-.+.+ |- ++++.. -+...+ .+++..+++.++.+
T Consensus 292 ttit~-~~~~d~Lv~k~l~~l~~v~k---~~-----------------irk~~e----~l~n~~--~~~~~~lvd~l~l~ 344 (947)
T COG5657 292 TTITR-PYIRDYLVSKSLTVLINVIK---YP-----------------IRKTAE----VLSNVS--ENLINNLVDLLILP 344 (947)
T ss_pred HhhcC-ccccchhhhhHHHHHHHhhc---cc-----------------cHHHHH----HHHHHH--HHHHHHHHHHHhhh
Confidence 33221 22344455455444433322 10 011111 111001 56778899999999
Q ss_pred cccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHH
Q 001804 406 YFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLK 485 (1011)
Q Consensus 406 ~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~k 485 (1011)
++++.++|+|+|++||.||++++...++++++|||+++.|.+++..|++.+++.+...++++.+ +| +.....+++
T Consensus 345 n~~lreed~E~~~ddp~eyire~s~~dye~~vr~~~~~~l~~~f~~~~~i~~~~~~~~ie~~~t-~P----~~~d~~~~~ 419 (947)
T COG5657 345 NLILREEDLEEWEDDPLEYIREQSKTDYEVNVRPCIENELKDLFDVFGRIAVGHELTVIESEAT-TP----NILDEARQL 419 (947)
T ss_pred ccccCcccccccccCHHHHHHhhccccchhhhhHHHHHHHHHHHHHHhhHhHHHHHHHHHHHhc-Cc----hHHHHHHHH
Confidence 9999999999999999999998755668889999999999999999998888999999999886 33 224567999
Q ss_pred HHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhcc--CCCchhHHHHHHHHHHhhhcc-CCc--chHHHHHHHHHhhccC
Q 001804 486 DAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSND--HPNMHIIHRKVAIILGQWVSE-IKD--DTKRAVYCALIKLLMD 560 (1011)
Q Consensus 486 eA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~--~~~~~~lR~ra~~~lg~~~~~-~~~--~~~~~~~~~ll~~L~d 560 (1011)
+|+|...|...+.+...+|+..|+.....|++.++ .++.+++|+|+..++..|... .+. +..--.++..+..+.+
T Consensus 420 ~a~~a~~g~g~~av~~~~~~v~~~~~~~~pd~~s~~~~~~~ri~~~~i~~i~~~r~~l~~~~~~~~~fl~~~~F~~yt~~ 499 (947)
T COG5657 420 FAAYASFGLGVEAVNRMVDFVKFLGSIIYPDLLSPNEIIHLRILRSRIAYILTFRNQLDSSELSESKFLASQFFVNYTTA 499 (947)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhcCccccCcccCceeEEehhccchheechhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999888888889999999999999999875 234568999999999999874 333 3444455556677763
Q ss_pred -CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHH
Q 001804 561 -KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQF 638 (1011)
Q Consensus 561 -~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~ 638 (1011)
.|.+|-++...|....++++.|.+....+-+++++-.+++++...+..+.+..++.+++.++..-++ +.|....+++.
T Consensus 500 ~id~~~lLT~~~a~~t~~~~~n~~~~~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~ 579 (947)
T COG5657 500 CIDAVVLLTTREAYSTIFDDWNFSVCSKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQL 579 (947)
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHH
Confidence 4666777778888889999998887777778888888888888888888888899999999999996 99999999999
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHH
Q 001804 639 FQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQL 718 (1011)
Q Consensus 639 L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l 718 (1011)
|.++|+....++..+. +..-.-.-+.|++.....+.+..+|....++.+.+ +.-+-||+.|+|+.++++.....+..
T Consensus 580 L~~lv~~~~knps~p~-~~h~~fe~I~al~~~~~~~~~~~ip~l~~~l~p~~--~~l~~ed~~El~~~~lq~~s~l~e~f 656 (947)
T COG5657 580 LDNLVEINAKNPSNPQ-FAHYTFEDIGALVFLKSGMCEITIPTLVLALVPEF--PVLLSEDATELWSYVLQLLSILPEHF 656 (947)
T ss_pred HHHHHHHHccCCccHH-HHHHHHHHHHHHHHhhhcccccchHHHHHhhCccc--hhhhhhhHHHHHHHHHHHHhhcchhh
Confidence 9999986543333221 33333333444444444567788898888887643 45677999999999999876665555
Q ss_pred Hh-hHhHHHHHHHh---chhhHHHHHHHHHHHHhcchhhhhhhh--H----HHHHHHHHHhhcC-ccchhHhhHHHHHHH
Q 001804 719 LA-YFPCLVEIMER---SFDHLQVAINIIEGYIILGGTDFLNMH--A----SCVAKLLDLVVGN-VNDKGLLIILPVIDM 787 (1011)
Q Consensus 719 ~~-lf~~l~~~l~~---~~~~l~~~~~il~~yi~lg~~~~l~~~--~----~~l~~~~~~~l~~-~~~~~~~~~~~l~e~ 787 (1011)
-. .+|.++..+.. +++.++....|+..|.++....+..++ + ..+..++..+++. ..+.-....+..++.
T Consensus 657 ~~~~lp~v~~~l~q~~~~t~ll~~~~~I~~~~~Ll~~~~~~~~~if~~s~~~~vL~i~~~ll~~e~~~~~~f~~~~~v~~ 736 (947)
T COG5657 657 SGDVLPSVVKILRQPSLATELLPTKLEILKSYRLLDNPILTTGYIFKSSGFQPVLGILQYLLGSEPHDALCFLNLTVVET 736 (947)
T ss_pred cCCcCchHHHHHhcccCchHHHHHHHHHHHHHHHHHhhhhcccccccccchhhhHHHHHHHHhcchHHHHHHhhHHHHHH
Confidence 54 37888887776 678899999999999988776554321 2 3556666666653 222112223334443
Q ss_pred HHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHh------ChHHHHHHhccchhhHHHhhcC
Q 001804 788 LIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVM------NANYLAQLTSEPSLSLLLQQAG 861 (1011)
Q Consensus 788 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~------~~~~~~~~l~~~~~~~~~~~~~ 861 (1011)
+.... ...+++..+.--++.++.+ .+.+ .+...++.+|+++... +|+.+ ... .+..
T Consensus 737 l~~~~--i~~~~v~~i~~lll~rl~n---s~~~---r~v~~~i~~fs~v~~k~~~t~~~dnlI-~ki--------~q~k- 798 (947)
T COG5657 737 LYLEN--IYEPYVNLIFVLLLSRLKN---SKTE---RFVIKIIHVFSLVSFKDSLTVGCDNLI-SKI--------NQTK- 798 (947)
T ss_pred hHHHH--HHhhcHHHHHHHHHHHhhc---ccch---HHHHHhheeeEEechhhccccCChHHH-HHH--------HHHH-
Confidence 32221 1245555443334443322 2333 4566667777776654 33322 221 1111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCch-hhHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcCCccccccccCCCcccc
Q 001804 862 IPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMRLPQVLDKLDQILSVCTSVILGGNDDLAEEESSGDNMSS 940 (1011)
Q Consensus 862 ~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~l~~l~~i~~~~~~~l~~~~~~~~~~~~~~d~~~~ 940 (1011)
+-....+...|.-.++.+.+. +||+..+|+++++++.+|++++ +..+.+.|.+++.+..+. ..||+.++
T Consensus 799 ----~i~i~~l~g~~Il~~~~i~~~~drKi~~ig~snllrt~~~~vls-~~sv~~li~~lLsei~et-----~~~da~i~ 868 (947)
T COG5657 799 ----NILIVQLYGNWILGFDEIHDSKDRKIHLIGLSNLLRTLHPEVLS-YVSVTNLIISLLSEIFET-----ASGDAIIY 868 (947)
T ss_pred ----HHHHHHHHhceeeccchhccHHHHHHHHHhHHhhhhhcCchhhh-HHHHHHHHHHHHHHHHHh-----ccCcceeh
Confidence 225678889999999999888 9999999999999999999998 889999999998653222 12332221
Q ss_pred C-----CCC--CCCCCChHHHHHHhhhhC-CCccccChHHHHHHHHHHHHHHhCc--c-HHHHHhhcCHHHHHHHHHHh
Q 001804 941 S-----KYH--GEGTIPSKELRRRQIKFS-DPVNQLSLENSVRENLQTCATLHGD--S-FNSTMSRMHSSALMQLKQAL 1008 (1011)
Q Consensus 941 ~-----~~~--~~~~~~~~~~r~~~~~~~-dpv~~~~l~~~~~~~l~~~~~~~g~--~-f~~~~~~~~~~~~~~l~~~l 1008 (1011)
. .++ +++..+.+..|.+++..+ ||+|.++...++.+...++.+.++| + ....+.+..|+.++|++..+
T Consensus 869 ~~~dd~~d~~~~~~is~~~f~r~~~~~~k~Dp~~~i~~~~~~is~~m~~~~sn~g~~n~~~~~L~~~nq~~L~q~~~~l 947 (947)
T COG5657 869 ELNDDYADDWFDGEISAEEFSRLAQLEFKVDPVHDIDNTKYFISFFMEAMNSNLGNENEIVFRLPTENQSLLEQLQEKL 947 (947)
T ss_pred hhccchhhhccccCccHHHHHHHHHhhccCCCccccchHHHHHHHHHHHHHhcccchhHHHHhcCCcCHHHHHHHhccC
Confidence 1 010 112224557788888555 9999999855555555666655655 2 56788899999999998753
No 7
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=100.00 E-value=1.8e-55 Score=495.12 Aligned_cols=894 Identities=17% Similarity=0.204 Sum_probs=607.0
Q ss_pred CHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccC----
Q 001804 7 DLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRD---- 82 (1011)
Q Consensus 7 d~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~---- 82 (1011)
+-+.+.++|.+++|+|+++|.+||.+|++|+..+||..+|.+++.++.. +.+.||.|.|+||++|.+||+...+
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~--sl~lRQ~A~v~L~~yie~hW~~~~E~fr~ 79 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDA--SLPLRQIALVLLKRYIEKHWSPNFEAFRY 79 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhccccchHHHHHHHHHHhCccc--CchHHHHHHHHHHHHHHHhCCChHhhccC
Confidence 4567999999999999999999999999999999999999999999865 5889999999999999999996432
Q ss_pred CCCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHh
Q 001804 83 SVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKEL 162 (1011)
Q Consensus 83 ~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~ 162 (1011)
+...+++.|..||..++.++.+++.+||+..+.+|+.||+.|||++||+++|.+..+++++|.+..++|+.+|..+..++
T Consensus 80 ~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 80 PLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred CCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 34488999999999999999999999999999999999999999999999999999999999999999999998887764
Q ss_pred hcccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCC
Q 001804 163 STKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFP 242 (1011)
Q Consensus 163 ~~~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~ 242 (1011)
.... +..+.+..++-+ ...|. .++..+. . .++..+ .+|.++++.... .
T Consensus 160 ~~ee-------~~~~~~~~l~~m-----------~~~f~-~~~~~s~---~---~~~~aa------~~~lf~sc~~li-~ 207 (1005)
T KOG2274|consen 160 DVEE-------MFFVGPVSLAEM-----------YRIFA-LTIVYSI---I---TRLGAA------RGKLFTSCLTLI-T 207 (1005)
T ss_pred HHHH-------Hhcccccchhhh-----------hhhhh-hccccch---h---HHHHhh------hhHHHHHHHHHH-h
Confidence 3211 111122122211 11111 1111110 0 011000 145555544321 1
Q ss_pred CCchhh--hhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCccccc--CccchhH
Q 001804 243 SDAKCI--QEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDK--CVLPSVV 318 (1011)
Q Consensus 243 ~~~~~~--~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~--~~l~~~~ 318 (1011)
.+.+.- .....+.+.++.++..+...+.... + ..+..+. ...|.+.++.+.+|....+. .+++..+
T Consensus 208 ~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~---g----~~~~~~~---eilk~~t~l~~nfp~~~~~~~~~~~~~vw 277 (1005)
T KOG2274|consen 208 NVEEVWAEHVKVFLSQILNQFMDILEHPLQRND---G----SDFSLRM---EILKCLTQLVENFPSLINPFMMGMFSIVW 277 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc---c----chHHHHH---HHHHHHHHHHHhhHHhhhHHHHhhhhHHH
Confidence 110000 0001233334444444444333211 1 1122222 24455666666666443320 0333333
Q ss_pred HHHHhh----h--------------cCCCCCccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhhhh
Q 001804 319 DFCLNK----I--------------TAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISN 380 (1011)
Q Consensus 319 ~~~~~~----~--------------~~~~~~~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~ 380 (1011)
...... + .+.+++...++.+.++.++|+..++.+...+. .+++
T Consensus 278 ~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~---------------ti~~---- 338 (1005)
T KOG2274|consen 278 QTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSK---------------TIKK---- 338 (1005)
T ss_pred HHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHH---------------Hhhh----
Confidence 322211 1 11223345667888899999998887532211 1111
Q ss_pred hhhhhhhcCCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHH
Q 001804 381 VVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVV 460 (1011)
Q Consensus 381 ~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l 460 (1011)
.+..++..+ .-|++++++.++.|..||++|+.+++++ |+.|-|+-.++..+...|+..-+..+
T Consensus 339 -------------~l~~lI~~~-v~y~Qlseeqie~w~sD~~~fV~dEd~~---~~~~~~~rd~~~~v~~~f~~~~i~~i 401 (1005)
T KOG2274|consen 339 -------------NLPELIYQL-VAYLQLSEEQIEVWTSDVNQFVADEDDG---YTARISVRDLLLEVITTFGNEGINPI 401 (1005)
T ss_pred -------------hhHHHHHHH-HHHHHhhHHHHHHHhccHHHhhccCCCC---chhhhhHHHHHHHHHHhccchhhhHH
Confidence 122233322 4567999999999999999999877544 57888888888888889986554555
Q ss_pred HHHHHHHHhcCC-CCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhh
Q 001804 461 VSILQEAMNGCS-TSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWV 539 (1011)
Q Consensus 461 ~~~l~~~~~~~~-~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~ 539 (1011)
........+... +...++..+|+..+|.+.+.+....+- -+.+.-..+..++...+..+ ..|++-.|+.|++++|+
T Consensus 402 ~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~-~~dd~l~~l~~~~~~~l~~~--e~P~Ll~Ra~~~i~~fs 478 (1005)
T KOG2274|consen 402 QDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD-ANDDKLIELTIMIDNGLVYQ--ESPFLLLRAFLTISKFS 478 (1005)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc-chHHHHHHHHHHHHhhcccc--cCHHHHHHHHHHHHHHH
Confidence 555333222100 001234578999999999998877331 01222223444555555544 33477789999999999
Q ss_pred cc--CCcchHHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHH
Q 001804 540 SE--IKDDTKRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLN 616 (1011)
Q Consensus 540 ~~--~~~~~~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~ 616 (1011)
+. ..++....++...++.+. |...+||+.|++++..++ ....+.|++|.+++.|.++..+.+ .|....+++
T Consensus 479 ~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild~L~qlas~~s-~evl~llmE 552 (1005)
T KOG2274|consen 479 SSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILDGLLQLASKSS-DEVLVLLME 552 (1005)
T ss_pred hhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHHHHHHHccccc-HHHHHHHHH
Confidence 85 678888889999999887 778899999999999988 356899999999999999999885 466777889
Q ss_pred HHHHHHHhhcccc-chHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCC-CCcc
Q 001804 617 LISILIGHVSEVI-PYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINS-PDEL 694 (1011)
Q Consensus 617 ~l~~ii~~~~ei~-p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~-~~~~ 694 (1011)
+|+.++.--.+.+ --...|+|...++.....+++-+.....+++..++...... ..+....+|-+-.+++.+. ..+.
T Consensus 553 ~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~m~e~~iPslisil~~~~~~~~~ 631 (1005)
T KOG2274|consen 553 ALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GPMQERLIPSLISVLQLNADKAPA 631 (1005)
T ss_pred HHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHcCcccccCc
Confidence 9998885333432 23456777777877777677666555556666655543332 2355666676666665322 3456
Q ss_pred hhhhhHHHHHHHHHhcCCC-CCHHHH-hhHhHHHHHHHh--chhhHHHHHHHHHHHHhcchhhhhhhhH------HHHHH
Q 001804 695 NLLEDSMLLWEATISHAPV-MVPQLL-AYFPCLVEIMER--SFDHLQVAINIIEGYIILGGTDFLNMHA------SCVAK 764 (1011)
Q Consensus 695 ~l~e~~l~L~~~l~~~~~~-~~~~l~-~lf~~l~~~l~~--~~~~l~~~~~il~~yi~lg~~~~l~~~~------~~l~~ 764 (1011)
.+..-|+|++.++++++|+ .+..+. ..||.++.|.-+ +.+.++...+||++||..+.+++.+++. -++.+
T Consensus 632 ~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImq 711 (1005)
T KOG2274|consen 632 GLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQ 711 (1005)
T ss_pred hhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHH
Confidence 7889999999999999976 555555 499999999865 4567999999999999999999988642 38889
Q ss_pred HHHHhhc-CccchhHhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChHH
Q 001804 765 LLDLVVG-NVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANY 843 (1011)
Q Consensus 765 ~~~~~l~-~~~~~~~~~~~~l~e~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~~ 843 (1011)
++.++++ +.++.+...+++++-.++..++.++.+.+..+|.+++..+.. .+. .+++++++.||+.+.+.+++.
T Consensus 712 V~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~---ae~---lsviQsLi~VfahL~~t~~~~ 785 (1005)
T KOG2274|consen 712 VLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQ---AET---LSVIQSLIMVFAHLVHTDLDQ 785 (1005)
T ss_pred HHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH---hhh---HHHHHHHHHHHHHHhhCCHHH
Confidence 9999886 455667777899998888888877888777777777776643 123 368999999999999999999
Q ss_pred HHHHhccchhhHHHhhcCCcchHHHHHHHHHHHHHcCCCCCch-hhHHHHHHHHHHhccC----chHH------------
Q 001804 844 LAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMR----LPQV------------ 906 (1011)
Q Consensus 844 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~----~p~~------------ 906 (1011)
++++|++.. + +++..+++.++..|++++.-+... ++|+++.++|++++.+ .+..
T Consensus 786 ~l~FL~Slp-----~----~~g~~AlefVMteW~srqhl~~g~ye~kv~i~alc~al~~~~~~ddkrLq~V~VkGelI~s 856 (1005)
T KOG2274|consen 786 LLNFLSSLP-----G----PTGEPALEFVMTEWTSRQHLYFGEYEGKVSIKALCKALQHLISTDDKRLQKVRVKGELIYS 856 (1005)
T ss_pred HHHHHHhCC-----C----CCCCcHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHhhhccCChhhceeeECCeeccc
Confidence 999998721 1 222458999999999999777555 9899988888887643 1100
Q ss_pred --------------------HHHHHHHHHHHHHHhhcCCcc-----c--cc-cccCC-CccccCCCCCCCCC--------
Q 001804 907 --------------------LDKLDQILSVCTSVILGGNDD-----L--AE-EESSG-DNMSSSKYHGEGTI-------- 949 (1011)
Q Consensus 907 --------------------l~~l~~i~~~~~~~l~~~~~~-----~--~~-~~~~~-d~~~~~~~~~~~~~-------- 949 (1011)
+.-+..|+..+++-+....+. . .+ .++++ | .|.+.++..+
T Consensus 857 ~d~~I~TRSka~k~Perwt~IPl~vKIlkLli~Els~~~e~~~~~qa~p~e~sqdd~nD---~wdD~~~~~e~~d~l~g~ 933 (1005)
T KOG2274|consen 857 MDEGIITRSKAKKNPERWTNIPLLVKILKLLISELSNVSEQNAARQAIPSEWSQDDGND---MWDDQPEEEEEEDGLAGQ 933 (1005)
T ss_pred CCCCeeehhhhccCchheeeccHHHHHHHHHHHHHHHHhhcccccccCCchhhhhcccc---ccccCCcCcccccchhhh
Confidence 012346676666655432211 0 00 00111 1 0111110000
Q ss_pred -------Ch----H-HHHHHhhhhCCCccccChHHHHHHHHHHHHHHhCccHHHHHhhcCHHHHHHHHHHh
Q 001804 950 -------PS----K-ELRRRQIKFSDPVNQLSLENSVRENLQTCATLHGDSFNSTMSRMHSSALMQLKQAL 1008 (1011)
Q Consensus 950 -------~~----~-~~r~~~~~~~dpv~~~~l~~~~~~~l~~~~~~~g~~f~~~~~~~~~~~~~~l~~~l 1008 (1011)
+. + +.-.......||.++++|..|+..+|.++.+..-+.|.-+.++++...+.-|++++
T Consensus 934 ~lsD~l~~d~D~~eDDe~dd~~~lkd~~yq~dlq~yL~dFl~efa~~d~~~f~~~~~~L~d~ER~VL~~i~ 1004 (1005)
T KOG2274|consen 934 LLSDILETDVDEYEDDEEDDPDLLKDPLYQIDLQAYLTDFLKEFASQDRPCFIMFYEHLTDNERRVLQTIL 1004 (1005)
T ss_pred hHHHHHhccccccccccccchhhccCcchhhhHHHHHHHHHHHHHhcCCcchhHHHhccCHHHHHHHHHhh
Confidence 00 0 01112235579999999999999999999987544599999999999999998865
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.2e-50 Score=466.07 Aligned_cols=539 Identities=19% Similarity=0.268 Sum_probs=409.9
Q ss_pred CCHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCC
Q 001804 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVG 85 (1011)
Q Consensus 6 ~d~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~ 85 (1011)
||.+.+.+++++.+|||+.+|++||++|+.....+.....|.+|+.+.+ ++++||+|+|.+|+.+.|+|++
T Consensus 1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~---~p~~Rq~aaVl~Rkl~~~~w~~------ 71 (1075)
T KOG2171|consen 1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEPLLPALAHILATSA---DPQVRQLAAVLLRKLLTKHWSR------ 71 (1075)
T ss_pred CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccchHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHhhc------
Confidence 5778999999999999999999999999966665558889999988775 6899999999999999999998
Q ss_pred CCHHHHHHHHHHHHhHH-hhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhhc
Q 001804 86 ISNEEKVHLRQKLLTHL-REENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELST 164 (1011)
Q Consensus 86 i~~e~K~~Ir~~ll~~L-~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~ 164 (1011)
|+++.|+.||+.+|.++ .|+.+.||+.+|.+|+.|||.++|++||+|++.|.++.+|+|+..++.|+.+|..+.+.+..
T Consensus 72 l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~ 151 (1075)
T KOG2171|consen 72 LSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN 151 (1075)
T ss_pred CCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence 99999999999999875 68899999999999999999999999999999999999999999999999998877765432
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhcCCCC
Q 001804 165 KRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSD 244 (1011)
Q Consensus 165 ~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~~~~~ 244 (1011)
+ +...+. .++.+|++.++.++. .++. .+++.+..++... ++
T Consensus 152 -~-------~~~~~~---------------~l~~lf~q~~~d~s~--------~vr~------~a~rA~~a~~~~~-~~- 192 (1075)
T KOG2171|consen 152 -T-------LQPHLD---------------DLLRLFSQTMTDPSS--------PVRV------AAVRALGAFAEYL-EN- 192 (1075)
T ss_pred -c-------cchhHH---------------HHHHHHHHhccCCcc--------hHHH------HHHHHHHHHHHHh-cc-
Confidence 1 111222 223344444434321 1221 2567666666432 11
Q ss_pred chhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCccchhHHHHHhh
Q 001804 245 AKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNK 324 (1011)
Q Consensus 245 ~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~ 324 (1011)
+..++..+...+|.++.+++..++...+ +.-+.+++.|.++++..|.-+++ ++..+++|+...
T Consensus 193 --~~~~~~~~~~llP~~l~vl~~~i~~~d~-------------~~a~~~l~~l~El~e~~pk~l~~--~l~~ii~~~l~I 255 (1075)
T KOG2171|consen 193 --NKSEVDKFRDLLPSLLNVLQEVIQDGDD-------------DAAKSALEALIELLESEPKLLRP--HLSQIIQFSLEI 255 (1075)
T ss_pred --chHHHHHHHHHhHHHHHHhHhhhhccch-------------HHHHHHHHHHHHHHhhchHHHHH--HHHHHHHHHHHH
Confidence 2234567888899999999887765321 11234668899999999988888 899999999988
Q ss_pred hcCCCCCccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhhhhhhhhhhhcCCCHHHHHHHHHHHHH
Q 001804 325 ITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIR 404 (1011)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~ 404 (1011)
..|.+-+ +..+..+++++-.+. +|.|... |.. .+ +.+..+..+ .
T Consensus 256 a~n~~l~----~~~R~~ALe~ivs~~---e~Ap~~~--------------k~~---------~~-~~~~lv~~~-----l 299 (1075)
T KOG2171|consen 256 AKNKELE----NSIRHLALEFLVSLS---EYAPAMC--------------KKL---------AL-LGHTLVPVL-----L 299 (1075)
T ss_pred hhccccc----HHHHHHHHHHHHHHH---HhhHHHh--------------hhc---------hh-hhccHHHHH-----H
Confidence 8775422 344555666665553 3333210 110 01 111122222 2
Q ss_pred hcccCChhhHHHHhcCHHhhhhhcccccc-cccccccHHHHHHHHHHHcc-cchHHHHHHHHHHHHhcCCCCCCCCCchh
Q 001804 405 RYFVLTASDLEEWYQNPEAFHHEQDMVQW-TEKLRPCAEALYIVLFENHS-QLLGPVVVSILQEAMNGCSTSVTEITPGL 482 (1011)
Q Consensus 405 ~~l~l~~~dle~we~Dpee~~~~~~~~~~-~~~~r~~a~~~l~~l~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 482 (1011)
. .+++.+ +| +||.++|+.|+. +.+....|+..++.++.+.+ +.++|++++++.++++ +++|
T Consensus 300 ~--~mte~~-----~D-~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~---------S~~w 362 (1075)
T KOG2171|consen 300 A--MMTEEE-----DD-DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQ---------STEW 362 (1075)
T ss_pred H--hcCCcc-----cc-hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhc---------CCCH
Confidence 2 333332 22 566654422211 22334456667888988866 8899999999999996 4789
Q ss_pred HHHHHHHHHHHhhhHhhc----CCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcc----hHHHHHHHH
Q 001804 483 LLKDAAYGAAAYVYYELS----NYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDD----TKRAVYCAL 554 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~----~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~----~~~~~~~~l 554 (1011)
++|.|+++|+|.+++|-. .++|- +.+++++.++|||| .||..||.++||+++.+.|+ ....+.+++
T Consensus 363 ~~R~AaL~Als~i~EGc~~~m~~~l~~---Il~~Vl~~l~Dphp---rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL 436 (1075)
T KOG2171|consen 363 KERHAALLALSVIAEGCSDVMIGNLPK---ILPIVLNGLNDPHP---RVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL 436 (1075)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHH---HHHHHHhhcCCCCH---HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH
Confidence 999999999999998843 34443 66788999999999 79999999999999987764 356666777
Q ss_pred HhhccCC-ChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchH
Q 001804 555 IKLLMDK-DLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYA 632 (1011)
Q Consensus 555 l~~L~d~-~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~ 632 (1011)
+..+.|. +.+|+.+||.|+-+|.+++ .++.+.||++.+|+.++.++.+-.....+..++++|+++++..+ ++.||.
T Consensus 437 ~~~ld~~~~~rV~ahAa~al~nf~E~~--~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~ 514 (1075)
T KOG2171|consen 437 IALLDSTQNVRVQAHAAAALVNFSEEC--DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYF 514 (1075)
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 8878764 6799999999999999887 48899999999999888777776666778889999999999999 599999
Q ss_pred HHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHcCCC
Q 001804 633 NKLVQFFQKVWEESS--GESLLQIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 633 ~~L~~~L~~lw~~~~--~~~~~~~~~l~~l~~l~~a~~~~ 670 (1011)
+.+||.|.+..++.+ |...+|...++|++.+..|+|+.
T Consensus 515 d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 515 DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 999999999888765 55789999999999999999964
No 9
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-34 Score=315.03 Aligned_cols=602 Identities=16% Similarity=0.210 Sum_probs=379.5
Q ss_pred HHHHHHHHhcCCChhhhHHHHHHHHHhhcC--CChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccC-----
Q 001804 10 AIYTLLANSMSRDESIRKPAEAALSQSESR--PGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRD----- 82 (1011)
Q Consensus 10 ~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~--pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~----- 82 (1011)
++.++|..++|||+++|+.||.+|+++..+ |+|...|.+++.+.+- ...+|.+|++.|||.+..+=..+..
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~--~~~~R~~AGL~LKN~L~akd~~~k~~~~qR 79 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNS--SDVARMAAGLQLKNSLTAKDPERKQQYQQR 79 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCC--cHHHHHHHhHHHhhhhccCCHHHHHHHHHH
Confidence 367888899999999999999999999876 8999999999999874 6899999999999999643221110
Q ss_pred CCCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhccCCHH-HHhHHHHHHHHHHH
Q 001804 83 SVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYP-REWPQLFSVLAQQLQAADVL-TSHRIFMILFRTLK 160 (1011)
Q Consensus 83 ~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P-~~WP~Ll~~L~~~l~s~~~~-~~~~al~~L~~v~k 160 (1011)
|..++.|.|++||.+++..|..+.+..++..|.+|+.||+.+.| +.||+|++.++..+.++.+. ..+++|.++..+|+
T Consensus 80 Wl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice 159 (859)
T KOG1241|consen 80 WLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICE 159 (859)
T ss_pred HHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHc
Confidence 34599999999999999999999999999999999999999999 89999999999999876543 55688999999998
Q ss_pred HhhcccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhc
Q 001804 161 ELSTKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISG 240 (1011)
Q Consensus 161 ~~~~~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~ 240 (1011)
+.... .+.+-...++ ..+++.... .+.+..+++. +++++..+..+.
T Consensus 160 ~i~pe-------vl~~~sN~iL------------------taIv~gmrk---~e~s~~vRLa------a~~aL~nsLef~ 205 (859)
T KOG1241|consen 160 DIDPE-------VLEQQSNDIL------------------TAIVQGMRK---EETSAAVRLA------ALNALYNSLEFT 205 (859)
T ss_pred cCCHH-------HHHHHHhHHH------------------HHHHhhccc---cCCchhHHHH------HHHHHHHHHHHH
Confidence 75431 2222222221 111112211 1112234332 577776665421
Q ss_pred CCCCchhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHH-HHHHHHHHHHHHHHhcCCCcccccCccch-hH
Q 001804 241 FPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTK-RACTKLMKVLVAIQGRHPYTFGDKCVLPS-VV 318 (1011)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-k~~~~~~k~~~~~~~~~p~~f~~~~~l~~-~~ 318 (1011)
-. .++.-.+... +|+..+..-+ .+...++ +++.+ |+++...+.....+ ++.. ..
T Consensus 206 ~~-nF~~E~ern~---iMqvvcEatq--------------~~d~~i~~aa~~C----lvkIm~LyY~~m~~--yM~~alf 261 (859)
T KOG1241|consen 206 KA-NFNNEMERNY---IMQVVCEATQ--------------SPDEEIQVAAFQC----LVKIMSLYYEFMEP--YMEQALF 261 (859)
T ss_pred HH-hhccHhhhce---eeeeeeeccc--------------CCcHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHH
Confidence 10 1111111111 1111111111 1112233 22222 33332222211111 2221 12
Q ss_pred HHHHhhhcCCCCCccchHHHHHHHHHHHHHHhhc-----ccccCCCCcccccCccccHHHhhhhhh-hhhhhhhhcCCCH
Q 001804 319 DFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLEC-----KEYKPSLTGRVMDDSGVTLEQMKKNIS-NVVGGVVSSLLPK 392 (1011)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~-----~~y~~~~~~~~~~~~~~~~~~~k~~~~-~~~~~~~~~~~~~ 392 (1011)
.....-..+ .-+..+.|+++|+..+... ++|.+. .+.+.. + ...++. .+. +
T Consensus 262 aitl~amks------~~deValQaiEFWsticeEEiD~~~e~~e~-----~d~~~~--p-~~~~fa~~a~---------~ 318 (859)
T KOG1241|consen 262 AITLAAMKS------DNDEVALQAIEFWSTICEEEIDLAIEYGEA-----VDQGLP--P-SSKYFARQAL---------Q 318 (859)
T ss_pred HHHHHHHcC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCCC--c-hhhHHHHHHH---------h
Confidence 222111122 1257899999999987642 111110 000000 0 000111 111 1
Q ss_pred HHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCC
Q 001804 393 ERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCS 472 (1011)
Q Consensus 393 ~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~ 472 (1011)
..++.+++.+ +.. ++|+ |+|+| +..++|...|.-+++..++.++|.+++++++.++
T Consensus 319 ~v~P~Ll~~L-------~kq-----de~~-------d~DdW--np~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~--- 374 (859)
T KOG1241|consen 319 DVVPVLLELL-------TKQ-----DEDD-------DDDDW--NPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQ--- 374 (859)
T ss_pred HhhHHHHHHH-------HhC-----CCCc-------ccccC--cHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcC---
Confidence 1222232211 111 1121 23545 6776777777778888899999999999999986
Q ss_pred CCCCCCCchhHHHHHHHHHHHhhhHhhcCC--CChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccC-----Ccc
Q 001804 473 TSVTEITPGLLLKDAAYGAAAYVYYELSNY--LSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEI-----KDD 545 (1011)
Q Consensus 473 ~~~~~~~~~~~~keA~l~alg~~a~~l~~~--~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~-----~~~ 545 (1011)
+++|+.|||+.+|+|++=++-.+. .+......+.++..+.|+.- ++|+.+.|++||.++.+ +.+
T Consensus 375 ------~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl---~VkdTaAwtlgrI~d~l~e~~~n~~ 445 (859)
T KOG1241|consen 375 ------NPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL---WVKDTAAWTLGRIADFLPEAIINQE 445 (859)
T ss_pred ------CcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh---hhcchHHHHHHHHHhhchhhcccHh
Confidence 478999999999999998772211 12222344556677777765 79999999999999853 456
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCC------CccccccchHHHHHHHHHHHhHhh-------------
Q 001804 546 TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANF------SERDFTDLLPICWDSCFKLVEEVQ------------- 606 (1011)
Q Consensus 546 ~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~------~~~~l~p~l~~il~~L~~ll~~~~------------- 606 (1011)
+...+.+.++..|+| +++|-..+|.|+.+|.+.... ..+...||.+.|+..|++.-.+.+
T Consensus 446 ~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeA 524 (859)
T KOG1241|consen 446 LLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEA 524 (859)
T ss_pred hhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHH
Confidence 678888888888876 678899999999999875421 112344788888887776433311
Q ss_pred -------------------------------------------hhhhHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHH
Q 001804 607 -------------------------------------------EFDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKV 642 (1011)
Q Consensus 607 -------------------------------------------~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~l 642 (1011)
..+..-.+..+|+.|+.+++ ++.+++++||..|..+
T Consensus 525 LmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri 604 (859)
T KOG1241|consen 525 LMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI 604 (859)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 12223346677788888888 5778888888888888
Q ss_pred HhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC-CCHHHHhh
Q 001804 643 WEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV-MVPQLLAY 721 (1011)
Q Consensus 643 w~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~-~~~~l~~l 721 (1011)
++. .+........+-.+++++.++|+....|.+.+.|.+...+++.. .....-.+.-|..-+.+.... +-|-.-.+
T Consensus 605 ~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~--e~qVc~~aVglVgdl~raL~~~i~py~d~~ 681 (859)
T KOG1241|consen 605 FES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ--EYQVCAAAVGLVGDLARALEDDILPYCDEL 681 (859)
T ss_pred HcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 876 33444555667778889999999988899999999999996421 123444555566555555432 44444455
Q ss_pred HhHHHHHHHh
Q 001804 722 FPCLVEIMER 731 (1011)
Q Consensus 722 f~~l~~~l~~ 731 (1011)
...|+.|+..
T Consensus 682 mt~Lvq~Lss 691 (859)
T KOG1241|consen 682 MTVLVQCLSS 691 (859)
T ss_pred HHHHHHHccC
Confidence 5666666654
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=100.00 E-value=6.2e-28 Score=259.46 Aligned_cols=637 Identities=14% Similarity=0.152 Sum_probs=374.2
Q ss_pred CHHHHHHHHHH-hcCCChhhhHHHHHHHHHhhcCC--ChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcccccccccc--
Q 001804 7 DLPAIYTLLAN-SMSRDESIRKPAEAALSQSESRP--GFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRR-- 81 (1011)
Q Consensus 7 d~~~l~~~L~~-s~s~d~~~r~~Ae~~L~~~~~~p--gf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~-- 81 (1011)
...++..+.++ .+|||+++|+.||.||+++.... .|...|.+++.+.+. .+..|.+|++.|||.+..+=..+.
T Consensus 2 ~~~ef~~l~~n~vLspD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns--~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 2 KKSEFRCLGKNHVLSPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNS--NDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred chHHHHHHHhcccCCCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCC--cHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 34455555555 48999999999999999998864 899999999999874 689999999999999864321110
Q ss_pred ---CCCCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCC-CCchhhHHHHHHHhccCCHHH-HhHHHHHHH
Q 001804 82 ---DSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYP-REWPQLFSVLAQQLQAADVLT-SHRIFMILF 156 (1011)
Q Consensus 82 ---~~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P-~~WP~Ll~~L~~~l~s~~~~~-~~~al~~L~ 156 (1011)
-|-.++.|.|++||...+++|.++.+.+.+..|.+++.||+++.| +.||+|+..++.....+.+.. ...++.++.
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~g 159 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICG 159 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHH
Confidence 033499999999999999999999999999999999999999999 889999999999998766543 345688888
Q ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHH
Q 001804 157 RTLKELSTKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQL 236 (1011)
Q Consensus 157 ~v~k~~~~~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~ 236 (1011)
..|+.-+. ..+-+....+ +..+.....+++ ....+++ .++|++...
T Consensus 160 y~ces~~P-------e~li~~sN~i--------------l~aiv~ga~k~e-------t~~avRL------aaL~aL~ds 205 (858)
T COG5215 160 YHCESEAP-------EDLIQMSNVI--------------LFAIVMGALKNE-------TTSAVRL------AALKALMDS 205 (858)
T ss_pred HHhhccCH-------HHHHHHhhHH--------------HHHHHHhhcccC-------chHHHHH------HHHHHHHHH
Confidence 88875321 1111111111 111122111121 1223333 368887764
Q ss_pred HHhcCCCCchhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHHHHhcCCCcccccCccch
Q 001804 237 IISGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPS 316 (1011)
Q Consensus 237 i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~ 316 (1011)
..+- ...+....+.. -+++..+...+. .+.......--+++++..++++ |.++ ++..
T Consensus 206 l~fv-~~nf~~E~erN---y~mqvvceatq~----------~d~e~q~aafgCl~kim~LyY~--------fm~~-ymE~ 262 (858)
T COG5215 206 LMFV-QGNFCYEEERN---YFMQVVCEATQG----------NDEELQHAAFGCLNKIMMLYYK--------FMQS-YMEN 262 (858)
T ss_pred HHHH-HHhhcchhhhc---hhheeeehhccC----------CcHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHH
Confidence 3210 00000000111 111212211111 0111111111123333333332 1110 2222
Q ss_pred hH-HHHHhhhcCCCCCccchHHHHHHHHHHHHHHhhcc-------cccCCCCcccccCccccHHHhhhh-hhhhhhhhhh
Q 001804 317 VV-DFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECK-------EYKPSLTGRVMDDSGVTLEQMKKN-ISNVVGGVVS 387 (1011)
Q Consensus 317 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~-------~y~~~~~~~~~~~~~~~~~~~k~~-~~~~~~~~~~ 387 (1011)
.+ .+...+..+. -++..+|+.+|+..++... .|-|+ .+. ..| ++.++ +
T Consensus 263 aL~alt~~~mks~------nd~va~qavEfWsticeEeid~~~e~~~~pe------------~p~-qn~~fa~aa--v-- 319 (858)
T COG5215 263 ALAALTGRFMKSQ------NDEVAIQAVEFWSTICEEEIDGEMEDKYLPE------------VPA-QNHGFARAA--V-- 319 (858)
T ss_pred HHHHHHHHHhcCc------chHHHHHHHHHHHHHHHHHhhhHHHHhhccc------------Cch-hhcchHHHH--H--
Confidence 11 1111222222 2578889999998776421 01110 000 000 11100 0
Q ss_pred cCCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHHHHHHHHHHH
Q 001804 388 SLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEA 467 (1011)
Q Consensus 388 ~~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~ 467 (1011)
.+.++.++..+ +.-.+||+ +|+| ++..+|.+.+.-+++..++.++.+++.++++.
T Consensus 320 ----~dvlP~lL~LL------------~~q~ed~~-------~DdW--n~smaA~sCLqlfaq~~gd~i~~pVl~FvEqn 374 (858)
T COG5215 320 ----ADVLPELLSLL------------EKQGEDYY-------GDDW--NPSMAASSCLQLFAQLKGDKIMRPVLGFVEQN 374 (858)
T ss_pred ----HHHHHHHHHHH------------HhcCCCcc-------cccc--chhhhHHHHHHHHHHHhhhHhHHHHHHHHHHh
Confidence 12333343211 11123332 4556 77877777777777778888988899999998
Q ss_pred HhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHH----HHhhHhhhccCCCchhHHHHHHHHHHhhhcc--
Q 001804 468 MNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFN----GALSLDLSNDHPNMHIIHRKVAIILGQWVSE-- 541 (1011)
Q Consensus 468 ~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~----~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~-- 541 (1011)
++ +++|+.|||+.+|+|.+-++ +..+.-..+. +-+..++.|+.- +++.+++|++|+.++.
T Consensus 375 i~---------~~~w~nreaavmAfGSvm~g--p~~~~lT~~V~qalp~i~n~m~D~~l---~vk~ttAwc~g~iad~va 440 (858)
T COG5215 375 IR---------SESWANREAAVMAFGSVMHG--PCEDCLTKIVPQALPGIENEMSDSCL---WVKSTTAWCFGAIADHVA 440 (858)
T ss_pred cc---------CchhhhHHHHHHHhhhhhcC--ccHHHHHhhHHhhhHHHHHhccccee---ehhhHHHHHHHHHHHHHH
Confidence 86 47899999999999998776 1112111222 333445555554 8999999999999984
Q ss_pred --CCcc-hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCC----CccccccchHHHHHHHHHHHhHhhh-------
Q 001804 542 --IKDD-TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANF----SERDFTDLLPICWDSCFKLVEEVQE------- 607 (1011)
Q Consensus 542 --~~~~-~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~----~~~~l~p~l~~il~~L~~ll~~~~~------- 607 (1011)
++|+ ..+......+..|.| ++.+-..++.++.+|+++..- .++.+.|+-+.|+..|++.-+....
T Consensus 441 ~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s 519 (858)
T COG5215 441 MIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVS 519 (858)
T ss_pred HhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 4554 456666666666766 345556777899999987531 1345778888888888765433211
Q ss_pred --------------------------------------------------hhhHHHHHHHHHHHHHhhc-cccchHHHHH
Q 001804 608 --------------------------------------------------FDSKVQVLNLISILIGHVS-EVIPYANKLV 636 (1011)
Q Consensus 608 --------------------------------------------------~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~ 636 (1011)
+|....++.+|..||.+.+ +|.|..++||
T Consensus 520 ~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm 599 (858)
T COG5215 520 LFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLM 599 (858)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 1222223445555555555 3566666666
Q ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC-CC
Q 001804 637 QFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV-MV 715 (1011)
Q Consensus 637 ~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~-~~ 715 (1011)
..+.++.+.. +.......++..++.+..++|+..+.|.+.++|.+.+.++. ....+...+..|..-+.....+ +.
T Consensus 600 ~Lf~r~les~-~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~---~d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 600 ELFIRILEST-KPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC---TDRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHhcc-CCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc---hhHHHHHHHHHHHHHHHHHhhhhHH
Confidence 6666655543 34455566788888999999988778888899999999853 2234566777777777665443 33
Q ss_pred HHHHhhHhHHHHHHHhc---hhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhh
Q 001804 716 PQLLAYFPCLVEIMERS---FDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVV 770 (1011)
Q Consensus 716 ~~l~~lf~~l~~~l~~~---~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l 770 (1011)
+---.+...|.+|+..+ -+.-+.++.++.-.++-=...|- .|...+..+|...-
T Consensus 676 ~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~-~YL~~im~L~qqas 732 (858)
T COG5215 676 IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFE-SYLDMIMMLFQQAS 732 (858)
T ss_pred HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHh
Confidence 33334566666777642 23334444443322221111122 24555555555544
No 11
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.97 E-value=3.7e-29 Score=276.19 Aligned_cols=311 Identities=15% Similarity=0.163 Sum_probs=224.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHH
Q 001804 219 LYLTCERWLLCLKIIRQLIISGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLV 298 (1011)
Q Consensus 219 l~~~~~~~~~~lk~l~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~ 298 (1011)
+....+..++++|+|+.++..++|+.+++ .+..||+.|...+....|.....++.+...++++|+.+|.+...+.
T Consensus 50 l~~~~~~l~lilKiF~sL~~~DLPe~fed-----~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~ 124 (370)
T PF08506_consen 50 LKVLFEMLKLILKIFYSLNCQDLPEFFED-----NLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYA 124 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS--HHHHH-----THHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcCcHHHHH-----HHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 44456666678999999999999987753 5889999999999987776554445566788999998887766654
Q ss_pred HHHhcCCCcccccCccchhHHHHHhhhcCCCCCccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhh
Q 001804 299 AIQGRHPYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNI 378 (1011)
Q Consensus 299 ~~~~~~p~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~ 378 (1011)
+ ++-..|.+ +++.+++-+++.+.+... ..-++.++.+++.|+..+.+...|+
T Consensus 125 ~---kY~e~f~~--~l~~fv~~vw~lL~~~~~-~~~~D~lv~~al~FL~~v~~~~~~~---------------------- 176 (370)
T PF08506_consen 125 E---KYEEEFEP--FLPTFVQAVWNLLTKISQ-QPKYDILVSKALQFLSSVAESPHHK---------------------- 176 (370)
T ss_dssp H---H-HHHHHH--HHHHHHHHHHHHHTC--S-SGGGHHHHHHHHHHHHHHHTSHHHH----------------------
T ss_pred H---HHHHHHHH--HHHHHHHHHHHHHHHhhh-cccccHHHHHHHHHHHHHHcchhHH----------------------
Confidence 4 44445555 777777777766655332 3456888999999999876532221
Q ss_pred hhhhhhhhhcCCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccchHH
Q 001804 379 SNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGP 458 (1011)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~ 458 (1011)
..|-+++.+.++|+.+|+|+|+++++|+|+||+||+||+|++-+.+..++.|.+|..++..++++|++.+.+
T Consensus 177 --------~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~ 248 (370)
T PF08506_consen 177 --------NLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTS 248 (370)
T ss_dssp --------TTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHH
Confidence 112345678889999999999999999999999999999876322222566777777888999999887777
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh----------hcCCCChHHHHHHHhhHhhhccCCCchhHH
Q 001804 459 VVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE----------LSNYLSFKDWFNGALSLDLSNDHPNMHIIH 528 (1011)
Q Consensus 459 ~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~----------l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR 528 (1011)
.+..+++++++.... +...+|+.||+|++.+|++|.. ..+.+|+.+++.++++|+|+......|+||
T Consensus 249 i~~~~i~~~l~~y~~---~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 249 ILMQYIQQLLQQYAS---NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHH----TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHhh---CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Confidence 766666665542110 1246899999999999999854 235679999999999999993334456999
Q ss_pred HHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHH
Q 001804 529 RKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSL 573 (1011)
Q Consensus 529 ~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL 573 (1011)
+||||++..|.+.++++....+++.++++|.+++.+|+..||.|+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 999999999999999999999999999999999999999999885
No 12
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=99.90 E-value=2.8e-21 Score=218.01 Aligned_cols=397 Identities=14% Similarity=0.226 Sum_probs=274.8
Q ss_pred CCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhc---cccchHHHHH
Q 001804 581 NFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEES---SGESLLQIQL 656 (1011)
Q Consensus 581 ~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~---~~~~~~~~~~ 656 (1011)
-|+.+++.|++++++++|++++......|+.. ++.|+-.++-.+++ +.|++..+++.|....... ..++.+-.-+
T Consensus 14 ~~~~~di~p~~~~ll~~Lf~~i~~~~s~ENey-lMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHyl 92 (435)
T PF03378_consen 14 RFSKADIQPFAQQLLQNLFALIEKPGSAENEY-LMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYL 92 (435)
T ss_dssp SS-GGGTTCCHHHHHHHHHHHHHTT-STC-HH-HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHH
T ss_pred eECHHHhhhhHHHHHHHHHHHHhcCCCccchH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhH
Confidence 36788999999999999999998865555444 88999999988885 9999999999988866532 3456777778
Q ss_pred HHHHHHHHHHcCCCC-c---chhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCC--CCCHHHHhhHhHHH-HHH
Q 001804 657 LIALRNFVVALGYQS-H---NCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAP--VMVPQLLAYFPCLV-EIM 729 (1011)
Q Consensus 657 l~~l~~l~~a~~~~~-~---~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~--~~~~~l~~lf~~l~-~~l 729 (1011)
+|+++.+++...+.. . .+.+.++|++..++++ +..+|...++++++.++...+ .+++..++|||.++ +.+
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~---dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~l 169 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ---DVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPAL 169 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT---T-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGG
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcch
Confidence 999999999877543 3 5889999999999987 677999999999999999987 57778889998775 445
Q ss_pred HhchhhHHHHHHHHHHHHhcchhhhhh-hhHHHHHHHHHHhhcC-ccchhHhhHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 001804 730 ERSFDHLQVAINIIEGYIILGGTDFLN-MHASCVAKLLDLVVGN-VNDKGLLIILPVIDMLIQCFPI-QVPPLISCSLQK 806 (1011)
Q Consensus 730 ~~~~~~l~~~~~il~~yi~lg~~~~l~-~~~~~l~~~~~~~l~~-~~~~~~~~~~~l~e~ll~~~~~-~~~~~~~~~l~~ 806 (1011)
+....+++.+.+.|.+|+..++..+.+ ++.+.++.++.+++.. .+| ..+..+++.++..+|. .+.+|+..++.-
T Consensus 170 We~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D---~~gF~LL~~iv~~~p~~~l~~yl~~I~~l 246 (435)
T PF03378_consen 170 WERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND---HYGFDLLESIVENLPPEALEPYLKQIFTL 246 (435)
T ss_dssp GGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH---HHHHHHHHHHHHHS-HHHHGGGHHHHHHH
T ss_pred hccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 667899999999999999999999875 3678999999999963 222 1355799999999986 358888888888
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHH-HhChHHHHHHhccchhhHHHhhcCCcchHHHHHHHH-HHHHHcCCCCC
Q 001804 807 LIVICLSGGDDHEPSKTAVKASSAAILARIL-VMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLV-DIWLDKVDHVS 884 (1011)
Q Consensus 807 l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~W~~~~~~~~ 884 (1011)
++.++.+. +. +.++...+..++.++ .++|+.+++.+.+.+ .| ....++ ..|+...+++.
T Consensus 247 ll~RLq~s---kT---~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ-------~g------lF~~il~~v~lp~~~k~~ 307 (435)
T PF03378_consen 247 LLTRLQSS---KT---EKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQ-------PG------LFGMILEKVWLPDLQKVS 307 (435)
T ss_dssp HHHHHHHC--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTS-------TT------HHHHHHHHTHHHHGGG--
T ss_pred HHHHHhhC---Cc---HHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc-------CC------cHHHHHHHHhcCchhhcC
Confidence 87777442 22 234445455555554 357888888775532 22 455555 56999999998
Q ss_pred ch-hhHHHHHHHHHHhccCchHH---H-HHHHHHHHHHHHHhhcCCccccccccCCCccccCCCC--CCCCCChHHHHHH
Q 001804 885 SV-QKKIFALALSIILTMRLPQV---L-DKLDQILSVCTSVILGGNDDLAEEESSGDNMSSSKYH--GEGTIPSKELRRR 957 (1011)
Q Consensus 885 ~~-~rKl~~laL~~Ll~~~~p~~---l-~~l~~i~~~~~~~l~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~r~~ 957 (1011)
+. |||++++|+++||+. .|.. . +.|+..+..+++++....+....++++ .....+. .+|..+.....-.
T Consensus 308 ~~~erKi~~vGltkLL~e-s~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~~~~e~---~~~~~d~~~~gy~~~fs~L~~a 383 (435)
T PF03378_consen 308 GPIERKICAVGLTKLLCE-SPAFLSEYSQLWPPLLEALLKLLERPPEASAADEED---FIDEEDVEDIGYQVSFSKLAFA 383 (435)
T ss_dssp SHHHHHHHHHHHHHHHHS-STTHHHH-CHHHHHHHHHHHHHHHTTSTT-S----S--------------TT-GGG--GGG
T ss_pred CcchhhHHHHHHHHHHhc-cHhhhhHHHHHHHHHHHHHHHHHcCCcccccccccc---ccccccchhcccchhhHHHHhC
Confidence 88 999999999999975 3322 2 578889999999886543332211111 0000111 1222222222222
Q ss_pred hhhhCCCcccc-ChHHHHHHHHHHHHHHhCccHHHHHhh-cCHHHHHHHHHH
Q 001804 958 QIKFSDPVNQL-SLENSVRENLQTCATLHGDSFNSTMSR-MHSSALMQLKQA 1007 (1011)
Q Consensus 958 ~~~~~dpv~~~-~l~~~~~~~l~~~~~~~g~~f~~~~~~-~~~~~~~~l~~~ 1007 (1011)
+....||+-.+ |.+.|+.+.|+++.+.+||.+.+++++ ++|+.++.|++|
T Consensus 384 ~~~~~Dp~~~i~d~~~~~~~~L~~~~~~~~G~~~~~i~~~l~~~~~~~L~~y 435 (435)
T PF03378_consen 384 GKKPRDPLPEIPDPKQYLAQSLSKLSQAHPGKIPPLIQQQLPPEAQQALQQY 435 (435)
T ss_dssp ------S-TTTTCHHHHHHHHHHHHHHHTTSSHHHHHGGGS-HHHHHHHHH-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCchHHHHHhhCCHHHHHHhccC
Confidence 23456999766 899999999999999999999999997 999999999875
No 13
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1e-10 Score=134.47 Aligned_cols=601 Identities=14% Similarity=0.172 Sum_probs=343.5
Q ss_pred CCCHHHHHHHHHHhcCC-ChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCC
Q 001804 5 ASDLPAIYTLLANSMSR-DESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDS 83 (1011)
Q Consensus 5 ~~d~~~l~~~L~~s~s~-d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~ 83 (1011)
+.+++++.+++....++ +.+....+++.|++++..|.-+..-.+++..+.. ..||.++|+.|.-.|.++|..
T Consensus 3 ~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~---~evqyFGAltL~~ki~~~~e~---- 75 (982)
T KOG2022|consen 3 SDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS---SEVQYFGALTLHDKINTRWEE---- 75 (982)
T ss_pred chHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch---hHHHHHhHHHHHHHHHhhhcc----
Confidence 44688899999998877 7788888999999999999877888888887764 678999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhHHh---hchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCC-H--HHHhHHHHHHHH
Q 001804 84 VGISNEEKVHLRQKLLTHLR---EENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAAD-V--LTSHRIFMILFR 157 (1011)
Q Consensus 84 ~~i~~e~K~~Ir~~ll~~L~---~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~-~--~~~~~al~~L~~ 157 (1011)
+++++...+|..++..+. ..++.|-+.++..++..+-+--|+.||+-+.+++.+++.++ + +...++..+|..
T Consensus 76 --~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~ 153 (982)
T KOG2022|consen 76 --CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEV 153 (982)
T ss_pred --CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHH
Confidence 899999999999997764 24567777777777777777789999999999999998642 2 223334333322
Q ss_pred H---HHHhhcccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHH
Q 001804 158 T---LKELSTKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIR 234 (1011)
Q Consensus 158 v---~k~~~~~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~ 234 (1011)
. -.+....+++-.++. .+..++--+.. ...+++....+.+.. . ....+..+... .++||+.
T Consensus 154 Ls~~p~e~q~~~l~~t~~~--~l~~eLak~~~--------~v~~l~e~vlr~~~n---~-t~s~~~~i~~~--~a~dCv~ 217 (982)
T KOG2022|consen 154 LSFMPAEFQHVTLPLTRRS--VLRGELAKFSE--------NVISLLEVVLRGGSN---S-TSSLINLIFKQ--AAVDCVE 217 (982)
T ss_pred hccCcHhhhhccchhHHHH--HHHHHHHHHHH--------HHhHHHHHHHhcccc---c-cHHHHHHHhhh--HHHHHHH
Confidence 1 233333334322211 11111111110 111112222222210 0 00111112212 2577777
Q ss_pred HHHH-hcCCCCchhhhhhhhhhhhhHHHHHHHHhhccCc-c-----------cccCCC---------hhhHHHHHHHHHH
Q 001804 235 QLII-SGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYY-S-----------SFQKGH---------PKFWEFTKRACTK 292 (1011)
Q Consensus 235 ~~i~-~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~-~-----------~~~~~~---------~~~~~~~~k~~~~ 292 (1011)
..+. .+++. .....|.+..+.++....... . ...+.. ++-....++.+..
T Consensus 218 ~Wi~~i~~~~--------~~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~ 289 (982)
T KOG2022|consen 218 QWIRYISLTG--------MDCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITL 289 (982)
T ss_pred HHHHHhcccc--------ccHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHH
Confidence 7765 23332 123455666666655322110 0 000000 0000001110111
Q ss_pred HHHHHHH-HHhcCC--CcccccC-ccchhHHHHHhhhcCCC----------CCccchHHHHHHHHHHHHHHhhccc---c
Q 001804 293 LMKVLVA-IQGRHP--YTFGDKC-VLPSVVDFCLNKITAPE----------PDIFSFEQFLIQCMVLVKSVLECKE---Y 355 (1011)
Q Consensus 293 ~~k~~~~-~~~~~p--~~f~~~~-~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~ll~~~l~~~~---y 355 (1011)
+.+.+.. +.+.+- ..+.++. ....+..|+.-.+...+ ..++.++. ..++++.++.|.. +
T Consensus 290 li~i~~~~l~e~~~~~~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~----v~rlv~vll~~t~~PG~ 365 (982)
T KOG2022|consen 290 LISICLGILQEVSGKIQEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSEL----VIRLVQVLLVLTNFPGQ 365 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHH----HHHHHHHHHHHhCCCCC
Confidence 1111111 111100 0000000 01111222111000000 00011111 1224444444322 2
Q ss_pred cCCCCcccccCcc-----ccHHHhhhh---hhhhhhhhhhcCCCHHHHHHHHHHHHHhcccCChhhHHHHhcCH-Hhhhh
Q 001804 356 KPSLTGRVMDDSG-----VTLEQMKKN---ISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNP-EAFHH 426 (1011)
Q Consensus 356 ~~~~~~~~~~~~~-----~~~~~~k~~---~~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dp-ee~~~ 426 (1011)
.|. +|.. .-|-.+.+. +.+..++.+.+.+......++++.++.+...-+++....|+.|. |+|
T Consensus 366 ypv------eE~~S~~~l~FW~tL~dei~~~~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F-- 437 (982)
T KOG2022|consen 366 YPV------EEIVSDRTLIFWYTLQDEIMQTINETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQF-- 437 (982)
T ss_pred ccH------HHHHhHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHH--
Confidence 221 1111 112222222 11222333444455556667888777777666777777787654 333
Q ss_pred hcccccccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChH
Q 001804 427 EQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFK 506 (1011)
Q Consensus 427 ~~~~~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~ 506 (1011)
+ +.|..-..++...-.-+++.+..++...+.+..+.. .+++..|-.-||+++.+..+++.+.. ..+
T Consensus 438 ----~----~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~----d~~p~s~~~tEaci~~~~sva~~~~~--t~~ 503 (982)
T KOG2022|consen 438 ----E----SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAG----DEDPDSLNRTEACIFQFQSVAEYLGE--TES 503 (982)
T ss_pred ----H----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcc----CCCchHHHHHHHHHHHHHHHHhhcCc--chh
Confidence 1 346666677776666677888888888888887632 23456799999999999999998764 345
Q ss_pred HHHHHHh--hHhhhccCCCchhHHHHHHHHHHhhhccC--CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCC
Q 001804 507 DWFNGAL--SLDLSNDHPNMHIIHRKVAIILGQWVSEI--KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANF 582 (1011)
Q Consensus 507 ~~l~~~l--l~~l~~~~~~~~~lR~ra~~~lg~~~~~~--~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~ 582 (1011)
+|+...+ .+..+-..++ |-+-+.+..++|-++..+ .|.+..+.++.+++.|..+.. -..|...++.+|+++
T Consensus 504 ~~i~rl~~~~asik~S~~n-~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C-- 578 (982)
T KOG2022|consen 504 TWIPRLFETSASIKLSAPN-PQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETC-- 578 (982)
T ss_pred HHHHHHHHhccccccccCC-hhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhh--
Confidence 6766544 3344433332 246677899999999854 466788888999998864333 456777799999997
Q ss_pred CccccccchHHHHHHHHHHHhHhhhhh-hHHHHHHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhh-----ccc-cchH-
Q 001804 583 SERDFTDLLPICWDSCFKLVEEVQEFD-SKVQVLNLISILIGHVS-E-VIPYANKLVQFFQKVWEE-----SSG-ESLL- 652 (1011)
Q Consensus 583 ~~~~l~p~l~~il~~L~~ll~~~~~~e-~~~~l~~~l~~ii~~~~-e-i~p~~~~L~~~L~~lw~~-----~~~-~~~~- 652 (1011)
++++.||+.+++..+-..++.....+ ..+.++.+||-+..+.. | +..|...|+.++..-.+. .++ ++-+
T Consensus 579 -~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~ 657 (982)
T KOG2022|consen 579 -PESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLR 657 (982)
T ss_pred -hhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHH
Confidence 78999999999999888776543223 35569999999999998 6 555888777765542222 122 1222
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 001804 653 QIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 653 ~~~~l~~l~~l~~a~~~~ 670 (1011)
-+-.+.|++.+..++...
T Consensus 658 ~~~~l~~iS~LftSL~~~ 675 (982)
T KOG2022|consen 658 IAFQLNTISALFTSLINK 675 (982)
T ss_pred HHHHHHHHHHHHhccCCC
Confidence 233468888888887654
No 14
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=99.65 E-value=7.1e-10 Score=122.40 Aligned_cols=594 Identities=12% Similarity=0.142 Sum_probs=297.2
Q ss_pred CCHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCC
Q 001804 6 SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVG 85 (1011)
Q Consensus 6 ~d~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~ 85 (1011)
.|++-+-++.+....+|...+++|++-|.+++..|+.+.---+|+.+... ++-+..|.-.|-..|.+.|.-
T Consensus 11 LdiallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~---pqskyiALs~LdklIttkWkl------ 81 (1053)
T COG5101 11 LDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKL---PQSKYIALSLLDKLITTKWKL------ 81 (1053)
T ss_pred cCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccC---cchhhhHHHHHHHHHHhhhhh------
Confidence 57788888888999999999999999999999999999999999998875 578999999999999999997
Q ss_pred CCHHHHHHHHHHHHhHHhh--chHHHH-------HHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHH
Q 001804 86 ISNEEKVHLRQKLLTHLRE--ENNQVA-------QMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILF 156 (1011)
Q Consensus 86 i~~e~K~~Ir~~ll~~L~~--~~~~ir-------~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~ 156 (1011)
+|++.|.-||.-+++.+.+ .+.++| +.+-.++-.|++.|||.+||+++|.+++.-+. +...-++.+.+|.
T Consensus 82 lp~~~r~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~~-s~~vCeNnmivLk 160 (1053)
T COG5101 82 LPEGMRQGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQI-SMEVCENNMIVLK 160 (1053)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhccc-hHHHHhccHHHHH
Confidence 9999999999999999754 455555 44555667799999999999999999987653 3333344455555
Q ss_pred HHHHHh---hcccchhhH-----HHHHHHHHHHHHHHHHhhHHh---------HHHHHhhhhHhhhhccccccccchHHH
Q 001804 157 RTLKEL---STKRLTADQ-----RNFAEISSHLFDYSWHLWQSD---------VQTILHGFSTVAQAYNSNALEQDHDEL 219 (1011)
Q Consensus 157 ~v~k~~---~~~rl~~~~-----~~l~~i~~~lf~~l~~~~~~~---------~~~ll~~~~~~~~~~~~~~~~~~~~~l 219 (1011)
..-++. +...+..-+ ..+..=.+++|.++.++.... .+.++.++... .-. . .-..+.+
T Consensus 161 lLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wi-Pl~---y-IfeTnIi 235 (1053)
T COG5101 161 LLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWI-PLD---Y-IFETNII 235 (1053)
T ss_pred HhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhC-chh---H-HHHHHHH
Confidence 444432 211111111 112222345555554443321 11122111100 000 0 0000111
Q ss_pred HHhHHHH-------HHHHHHHHHHHHhc-CCCCchhhhhhhhhhhhhHHHHHHHH-hhccCccc----ccCCChhhHHHH
Q 001804 220 YLTCERW-------LLCLKIIRQLIISG-FPSDAKCIQEVRPVKEVSPLLLNAIQ-SFLPYYSS----FQKGHPKFWEFT 286 (1011)
Q Consensus 220 ~~~~~~~-------~~~lk~l~~~i~~~-~~~~~~~~~~~~~l~~~~~~~~~~l~-~~l~~~~~----~~~~~~~~~~~~ 286 (1011)
.++.++. ..+++|+.-....| .|... ...+ ..+.-.++....... ...|...+ ..+....-..++
T Consensus 236 eLv~~~f~s~pd~r~~tl~CLtEi~~L~~~pq~n-~~~~-r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fv 313 (1053)
T COG5101 236 ELVLEHFNSMPDTRVATLSCLTEIVDLGRHPQEN-AEKE-RILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFV 313 (1053)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhccCcccc-hhhh-hHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHH
Confidence 1111111 12566666655544 23211 1000 111211221111111 11111110 011111111222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccccCccchhHHHHHhhh---cCCCCC------ccchHHHHHHHHHHHHHHhhcccccC
Q 001804 287 KRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNKI---TAPEPD------IFSFEQFLIQCMVLVKSVLECKEYKP 357 (1011)
Q Consensus 287 ~k~~~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~~---~~~~~~------~~~~~~~~~~~l~ll~~~l~~~~y~~ 357 (1011)
. ++...+..+.+.|-..+-.+. +...+--...|+ +...+. -+.|.++..+.+.=+..+ -..+-+|
T Consensus 314 q----~LA~fL~s~~~~~~~lLE~~e-~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~l-p~tem~P 387 (1053)
T COG5101 314 Q----KLAQFLSSLYEVYISLLEARE-MAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRL-PATEMSP 387 (1053)
T ss_pred H----HHHHHHHHHHHHHHHHhcChh-HHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhC-cccccCc
Confidence 2 222233333333222111110 001111111111 111000 112333333322211111 0011112
Q ss_pred CCCcccccCccccHHHh---hhhhhhhhhhhhhcCCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhc--cccc
Q 001804 358 SLTGRVMDDSGVTLEQM---KKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQ--DMVQ 432 (1011)
Q Consensus 358 ~~~~~~~~~~~~~~~~~---k~~~~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~--~~~~ 432 (1011)
-.-....+..+.+.+.. +|-.. +++ .+.+.++.-.+|.+. .++|+.---++|..|-+|+- +.|.
T Consensus 388 li~ls~~s~~istnpn~~~~~pLrk----hiY-----~~ilsqLrlvlienM--vrPEEVliVendegEivRefvketDt 456 (1053)
T COG5101 388 LIQLSVGSQAISTNPNQDSTKPLRK----HIY-----IGILSQLRLVLIENM--VRPEEVLIVENDEGEIVREFVKETDT 456 (1053)
T ss_pred chhccccchhccCCcchhcccchHH----HHH-----HHHHHHHHHHHHHcC--CCcceEEEEECCCcHHHHHHhccccH
Confidence 11011111111222211 11110 011 123344444444442 23444333345555555543 1222
Q ss_pred ccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHH
Q 001804 433 WTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGA 512 (1011)
Q Consensus 433 ~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ 512 (1011)
- .+-++....+..+..---...-.+...-+...+- +..=+|..--...-|+|+++..+.+ ..-..|+.+.
T Consensus 457 I--~lYksmRevLvyLthL~v~Dte~~mi~Klarq~d-------g~EWsw~nlNtLcWAIGSISGamsE-~~EkrF~Vnv 526 (1053)
T COG5101 457 I--ELYKSMREVLVYLTHLIVDDTEKYMIGKLARQLD-------GKEWSWNNLNTLCWAIGSISGAMSE-VNEKRFFVNV 526 (1053)
T ss_pred h--HHHHHHhhHHHHHhhhhhhhHHHHHHHHHHHHhc-------CCccchhhHhHHHHHHhcccchhhh-HHHHHHHHHH
Confidence 1 1111222222222211111222333333333331 2223488888888999999877653 3445566665
Q ss_pred h-----hHhhhccCCCchhHHHHHHHHHHhhhccC--CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCC---
Q 001804 513 L-----SLDLSNDHPNMHIIHRKVAIILGQWVSEI--KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANF--- 582 (1011)
Q Consensus 513 l-----l~~l~~~~~~~~~lR~ra~~~lg~~~~~~--~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~--- 582 (1011)
+ +-+++....+-.++.+-+...+|||-..+ .-.++..+..-+...|...+--|+-.||..+-.+++.+..
T Consensus 527 iKdLL~LcemKrgKdnKAVvASnIMyvvGQYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv 606 (1053)
T COG5101 527 IKDLLALCEMKRGKDNKAVVASNIMYVVGQYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFV 606 (1053)
T ss_pred HHHHHHHHHHhhcCCcchhhecceeeeeccchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHh
Confidence 4 33444433333378888999999997643 2356777777788888767778999999999888876631
Q ss_pred --CccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHh
Q 001804 583 --SERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEV---IPYANKLVQFFQKVWE 644 (1011)
Q Consensus 583 --~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei---~p~~~~L~~~L~~lw~ 644 (1011)
...+-.||+..|+..|-+.-...+... +...+++.+-+|...... ......+|+....-|.
T Consensus 607 ~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ-~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~ 672 (1053)
T COG5101 607 TQQEGESEPFIVYIIRNLPKTTGDLEPQQ-KHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWL 672 (1053)
T ss_pred hcCCCCCCcHHHHHHHhhhhhcccCChHH-HhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHH
Confidence 223457888888888877665554322 334778888777655532 2234456665555664
No 15
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.6e-11 Score=141.36 Aligned_cols=523 Identities=16% Similarity=0.204 Sum_probs=305.4
Q ss_pred cCCChhhhHHHHHHHHHh-----hcC-----CChHHHHHHHHHhcCCCCCHHHHH----HHHHHHhhccccccccccCCC
Q 001804 19 MSRDESIRKPAEAALSQS-----ESR-----PGFCSCLMEVITAKDLASQVDVRL----MASVYFKNSINRYWRNRRDSV 84 (1011)
Q Consensus 19 ~s~d~~~r~~Ae~~L~~~-----~~~-----pgf~~~L~~i~~~~~~~~~~~vR~----~AaI~lKN~I~~~W~~~~~~~ 84 (1011)
.++|+++|+-|-=.++.+ .+- ...-+.|+.++.+.. ...||. ..+-..||-+.-.|..
T Consensus 47 ~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~---~~~vr~k~~dviAeia~~~l~e~WPe----- 118 (1075)
T KOG2171|consen 47 TSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSET---EPSVRHKLADVIAEIARNDLPEKWPE----- 118 (1075)
T ss_pred cCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHhccccchHH-----
Confidence 467888888876666543 332 234566777777765 367774 5677889988888864
Q ss_pred CCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCc----hhhHHHHHHHhccCCHHHHhHHHHHHHHHHH
Q 001804 85 GISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREW----PQLFSVLAQQLQAADVLTSHRIFMILFRTLK 160 (1011)
Q Consensus 85 ~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~W----P~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k 160 (1011)
+-+.++++..+++.+.|-..-.+++.+... +++.- +++.+-+.+.++.++....-.++.++..+.+
T Consensus 119 ---------ll~~L~q~~~S~~~~~rE~al~il~s~~~~-~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 119 ---------LLQFLFQSTKSPNPSLRESALLILSSLPET-FGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAE 188 (1075)
T ss_pred ---------HHHHHHHHhcCCCcchhHHHHHHHHhhhhh-hccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 777888888899999999988888888765 34333 4777777888877654455567788887877
Q ss_pred HhhcccchhhHHHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhhccccccccchHHHHHhHHHHHHHHHHHHHHHHhc
Q 001804 161 ELSTKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISG 240 (1011)
Q Consensus 161 ~~~~~rl~~~~~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lk~l~~~i~~~ 240 (1011)
.+..+. ...+.|..++|.++. .+...++.++. +.++ .+++++--++..
T Consensus 189 ~~~~~~--~~~~~~~~llP~~l~---------------vl~~~i~~~d~-------~~a~-------~~l~~l~El~e~- 236 (1075)
T KOG2171|consen 189 YLENNK--SEVDKFRDLLPSLLN---------------VLQEVIQDGDD-------DAAK-------SALEALIELLES- 236 (1075)
T ss_pred Hhccch--HHHHHHHHHhHHHHH---------------HhHhhhhccch-------HHHH-------HHHHHHHHHHhh-
Confidence 654111 233456666665543 33433334321 1111 235555554432
Q ss_pred CCCCchhhhhhhhhhhhhHHHHHHHHhhccCcccccCCChhhHHHHHHHHHHHHHHHHH----HHhcCCCcccccCccch
Q 001804 241 FPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVA----IQGRHPYTFGDKCVLPS 316 (1011)
Q Consensus 241 ~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~~~k~~~~----~~~~~p~~f~~~~~l~~ 316 (1011)
.|+... ..+...++..+.+... .+ ..+.+|.....+.-++.+ +..+++. ++++ +++.
T Consensus 237 ~pk~l~-----~~l~~ii~~~l~Ia~n-----~~-------l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~~-lv~~ 297 (1075)
T KOG2171|consen 237 EPKLLR-----PHLSQIIQFSLEIAKN-----KE-------LENSIRHLALEFLVSLSEYAPAMCKKLAL-LGHT-LVPV 297 (1075)
T ss_pred chHHHH-----HHHHHHHHHHHHHhhc-----cc-------ccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhcc-HHHH
Confidence 111111 1223333333333322 11 122333211112112222 2223333 3332 3333
Q ss_pred hHHHHHhhhcC-----CC---CC-ccchHHHHHHHHHHHHHHhhcccccCCCCcccccCccccHHHhhhhhhhhhhhhhh
Q 001804 317 VVDFCLNKITA-----PE---PD-IFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVS 387 (1011)
Q Consensus 317 ~~~~~~~~~~~-----~~---~~-~~~~~~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 387 (1011)
.+..+.....+ .+ ++ ......++.+++..+..-+.. ..
T Consensus 298 ~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g-----~~---------------------------- 344 (1075)
T KOG2171|consen 298 LLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG-----KQ---------------------------- 344 (1075)
T ss_pred HHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-----hh----------------------------
Confidence 33332211111 11 01 122345566666555443321 00
Q ss_pred cCCCHHHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccc---hHHHHHHHH
Q 001804 388 SLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQL---LGPVVVSIL 464 (1011)
Q Consensus 388 ~~~~~~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---l~~~l~~~l 464 (1011)
.+..+ ++++ +.+.+ ...| .-|.++--.+-.+..-.++. .+|-+++++
T Consensus 345 ------v~p~~-----~~~l--------------~~~l~---S~~w--~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V 394 (1075)
T KOG2171|consen 345 ------VLPPL-----FEAL--------------EAMLQ---STEW--KERHAALLALSVIAEGCSDVMIGNLPKILPIV 394 (1075)
T ss_pred ------ehHHH-----HHHH--------------HHHhc---CCCH--HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 00011 1111 00110 2234 33544433344444333322 235566665
Q ss_pred HHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCC--hHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccC
Q 001804 465 QEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLS--FKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEI 542 (1011)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~--~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~ 542 (1011)
-..++ .+..+.|.||+.|+|.++..+.+.+. +.+.+.+.|+..+.++. .+-+..-|+-.+=.|++.+
T Consensus 395 l~~l~---------DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~--~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 395 LNGLN---------DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ--NVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HhhcC---------CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC--chHHHHHHHHHHHHHHHhC
Confidence 55553 24579999999999999988765432 12223333444444442 2357777777777777766
Q ss_pred CcchHHHHHHHHHh----hc-cCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhH---HHH
Q 001804 543 KDDTKRAVYCALIK----LL-MDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSK---VQV 614 (1011)
Q Consensus 543 ~~~~~~~~~~~ll~----~L-~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~---~~l 614 (1011)
+.+...+.++.++. .| +.....||..|++||.+..+.. .+.|.||.+.+|..|.+.++....+|.+ ...
T Consensus 464 ~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA---~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~Lrgkt 540 (1075)
T KOG2171|consen 464 DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA---QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKT 540 (1075)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH---hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhH
Confidence 65555444444444 33 4567789999999999999885 6899999999999999999887644433 346
Q ss_pred HHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcC
Q 001804 615 LNLISILIGHVS-E-VIPYANKLVQFFQKVWEES-SGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 615 ~~~l~~ii~~~~-e-i~p~~~~L~~~L~~lw~~~-~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~ 687 (1011)
++|++.+.-.+| + +.|++.++|+.+..+-.+. +++...+.-.+...+.++..+|++...|.+.++|.+-...+
T Consensus 541 mEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~ 616 (1075)
T KOG2171|consen 541 MECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTAR 616 (1075)
T ss_pred HHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhc
Confidence 899999999999 5 9999999999988765322 35667777888999999999999988888877776665554
No 16
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3e-08 Score=112.32 Aligned_cols=126 Identities=16% Similarity=0.244 Sum_probs=104.2
Q ss_pred HHHHHHHhcC--CChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCCH
Q 001804 11 IYTLLANSMS--RDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGISN 88 (1011)
Q Consensus 11 l~~~L~~s~s--~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~~ 88 (1011)
+.+++.++.. .|.+.+++|-+.+.+++..|.-+....+++.+.+. .+.+|...-=.|-..++..+.. .+.
T Consensus 5 iEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts--~d~vkf~clqtL~e~vrekyne------~nl 76 (980)
T KOG2021|consen 5 IEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETS--NDLVKFYCLQTLIELVREKYNE------ANL 76 (980)
T ss_pred HHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcc--cchhhhhhHHHHHHHHHHhhcc------CCH
Confidence 4555555554 59999999999999999999999999999998862 5789988877777666555444 678
Q ss_pred HHHHHHHHHHHhHHh-----hc----hHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCC
Q 001804 89 EEKVHLRQKLLTHLR-----EE----NNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAAD 144 (1011)
Q Consensus 89 e~K~~Ir~~ll~~L~-----~~----~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~ 144 (1011)
.+.+.||..+..-+. .. +.-|++.++.+++.+.-.+||..||+++..++..++-+.
T Consensus 77 ~elqlvR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~WnsfF~dlmsv~~~~s 141 (980)
T KOG2021|consen 77 NELQLVRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNSFFDDLMSVFQVDS 141 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhccc
Confidence 899999999886653 22 678999999999999999999999999999999987553
No 17
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.34 E-value=2.8e-12 Score=110.06 Aligned_cols=73 Identities=29% Similarity=0.546 Sum_probs=64.3
Q ss_pred HHHHHHHhhcC-CChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcccccccccc--CCCCCCHHHHHHHHHHHHhHHh
Q 001804 29 AEAALSQSESR-PGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRR--DSVGISNEEKVHLRQKLLTHLR 103 (1011)
Q Consensus 29 Ae~~L~~~~~~-pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~--~~~~i~~e~K~~Ir~~ll~~L~ 103 (1011)
||++|++++++ |||..+|++|+.+.+. +..+|++|+++|||.|.++|+... .+..+++++|..||+.++++|.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~--~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQ--DPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTS--CHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 89999999999 9999999999988764 799999999999999999999211 1233999999999999999875
No 18
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.10 E-value=9e-05 Score=86.92 Aligned_cols=173 Identities=13% Similarity=0.164 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHhhhccC---C-------cchHHHHHHHHHhhcc--CCChHHHHHHHHHHHHhhhhcCCCccccccchHH
Q 001804 526 IIHRKVAIILGQWVSEI---K-------DDTKRAVYCALIKLLM--DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPI 593 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~---~-------~~~~~~~~~~ll~~L~--d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~ 593 (1011)
-+-+-|..+.++|+..+ . ..+..++|...++.|. |.|.-||+.|.+++..++-.+ ++.+...++.
T Consensus 535 KisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~f---gD~l~~eL~~ 611 (1233)
T KOG1824|consen 535 KISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANF---GDFLGNELPR 611 (1233)
T ss_pred hhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH---hhhhhhhhHH
Confidence 47888899999998842 1 2567899999999996 889999999999999999887 4677778888
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCC
Q 001804 594 CWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE--VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQS 671 (1011)
Q Consensus 594 il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e--i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~ 671 (1011)
++..++.-+++ +-++.....++..|+.+.-. ..|....+.+.|...... ...-++.+.+.++-.++...+..-
T Consensus 612 ~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK--~~r~lr~~~l~a~~~L~~~~~~~~ 686 (1233)
T KOG1824|consen 612 TLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRK--NQRALRLATLTALDKLVKNYSDSI 686 (1233)
T ss_pred HHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccc
Confidence 88877765543 34555566777777765444 467777777766654432 245678889999999999987653
Q ss_pred cc-hh----hhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC
Q 001804 672 HN-CY----SMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV 713 (1011)
Q Consensus 672 ~~-~~----~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~ 713 (1011)
+. .. .-+.|+|..+- ...-+-++.++.++....++
T Consensus 687 ~~~~~e~vL~el~~Lisesd-------lhvt~~a~~~L~tl~~~~ps 726 (1233)
T KOG1824|consen 687 PAELLEAVLVELPPLISESD-------LHVTQLAVAFLTTLAIIQPS 726 (1233)
T ss_pred cHHHHHHHHHHhhhhhhHHH-------HHHHHHHHHHHHHHHhcccH
Confidence 21 11 23344443322 24557788888888776553
No 19
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-06 Score=100.47 Aligned_cols=121 Identities=15% Similarity=0.294 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHH
Q 001804 564 SVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKV 642 (1011)
Q Consensus 564 ~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~l 642 (1011)
.|+.+|-.|+..+++.. +..|..|++.+..=|..-++..++.-.-...+..++.+...++ +|.||++.+|+.|.+-
T Consensus 612 ~v~e~a~laV~tl~~~L---g~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~ 688 (859)
T KOG1241|consen 612 VVHEEAFLAVSTLAESL---GKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQC 688 (859)
T ss_pred cchHHHHHHHHHHHHHH---hHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555555555555554 3456666666666666656444332333346677888888888 5999999999999998
Q ss_pred HhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcC
Q 001804 643 WEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 643 w~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~ 687 (1011)
.++..-+.-++-.+|+|++.|+.|+|.+...|...++|+++.+-+
T Consensus 689 Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~ 733 (859)
T KOG1241|consen 689 LSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASS 733 (859)
T ss_pred ccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 877666777888999999999999999988899999999998873
No 20
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.3e-06 Score=98.14 Aligned_cols=348 Identities=16% Similarity=0.206 Sum_probs=228.3
Q ss_pred ccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCC-------CChHHHH
Q 001804 437 LRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNY-------LSFKDWF 509 (1011)
Q Consensus 437 ~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~-------~~~~~~l 509 (1011)
+|....-+.-+++..++-.--|-+++.+-+.+. +++....|+|+-|+..+++.-.+. -|. +.+
T Consensus 106 Ir~tvGivITTI~s~~~~~~wpelLp~L~~~L~---------s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl-~~m 175 (885)
T KOG2023|consen 106 IRATVGIVITTIASTGGLQHWPELLPQLCELLD---------SPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPL-NIM 175 (885)
T ss_pred HHhhhhheeeeeecccccccchhHHHHHHHHhc---------CCcccccchhHHHHHHHHhhhHHHHhhhcccCch-HHh
Confidence 454443344445544443333677777777775 234456899999999998762221 122 224
Q ss_pred HHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcch---HHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccc
Q 001804 510 NGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDT---KRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERD 586 (1011)
Q Consensus 510 ~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~---~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~ 586 (1011)
.+.++.-++.++| .+|+-|.-++.+|.-..++.. ....++.+.++=+|++.-||-.-|+||..+.|- ..+.
T Consensus 176 ipkfl~f~~h~sp---kiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev---r~dk 249 (885)
T KOG2023|consen 176 IPKFLQFFKHPSP---KIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV---RPDK 249 (885)
T ss_pred HHHHHHHHhCCCh---hHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh---cHHh
Confidence 4455566677766 799999999999988655433 566778887777899999999999999998874 5789
Q ss_pred cccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc--c-ccchHHHHHHHHHH----------HHhhc-------
Q 001804 587 FTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS--E-VIPYANKLVQFFQK----------VWEES------- 646 (1011)
Q Consensus 587 l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~--e-i~p~~~~L~~~L~~----------lw~~~------- 646 (1011)
+.|+++.|++=.+...+...+. .-+-..+..-++++.-- + +.||...|+|.|.+ +..+.
T Consensus 250 l~phl~~IveyML~~tqd~dE~-VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vp 328 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDEN-VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVP 328 (885)
T ss_pred cccchHHHHHHHHHHccCcchh-HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCC
Confidence 9999999999988888776542 22234555666666544 3 68999999998876 22200
Q ss_pred --------------------------------cc-----cchHH---HHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhc
Q 001804 647 --------------------------------SG-----ESLLQ---IQLLIALRNFVVALGYQSHNCYSMLLPILRRGI 686 (1011)
Q Consensus 647 --------------------------------~~-----~~~~~---~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l 686 (1011)
+| ++-+| .+.++.++++ .|. .+.+.++|+++..+
T Consensus 329 DreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~~---elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 329 DREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FGD---ELLPILLPLLKEHL 402 (885)
T ss_pred chhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh---hHH---HHHHHHHHHHHHHc
Confidence 00 12232 3445555554 333 58899999999999
Q ss_pred CCCCCCcchhhhhHHHHHHHHHhcC-CCCCHHHHhhHhHHHHHHHhchhhHHHHH-HHHHHHHhcchhhhhhh-hHHHHH
Q 001804 687 DINSPDELNLLEDSMLLWEATISHA-PVMVPQLLAYFPCLVEIMERSFDHLQVAI-NIIEGYIILGGTDFLNM-HASCVA 763 (1011)
Q Consensus 687 ~~~~~~~~~l~e~~l~L~~~l~~~~-~~~~~~l~~lf~~l~~~l~~~~~~l~~~~-~il~~yi~lg~~~~l~~-~~~~l~ 763 (1011)
.. +. =-.-|.|.--+.++..++ .-+.|.|-.|.|.++.++.+-...+|.+. -.|+.|...--++=-+. ..+-+.
T Consensus 403 ~~--~~-W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~ 479 (885)
T KOG2023|consen 403 SS--EE-WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLE 479 (885)
T ss_pred Cc--ch-hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHH
Confidence 64 12 124466777788888886 34778888999999999988666665432 34444433211110111 123445
Q ss_pred HHHHHhhcCccchhHhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q 001804 764 KLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVIC 811 (1011)
Q Consensus 764 ~~~~~~l~~~~~~~~~~~~~l~e~ll~~~~~~~~~~~~~~l~~l~~~~ 811 (1011)
.++.++++. +-.-..++|+..-++...+..+..|+++.+|+.++...
T Consensus 480 ~ll~~llD~-NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af 526 (885)
T KOG2023|consen 480 GLLRRLLDS-NKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAF 526 (885)
T ss_pred HHHHHHhcc-cHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 566666653 12223456777788888887788899999999888765
No 21
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=8.1e-06 Score=91.32 Aligned_cols=120 Identities=22% Similarity=0.335 Sum_probs=96.7
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHhHHh---
Q 001804 27 KPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLR--- 103 (1011)
Q Consensus 27 ~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~~e~K~~Ir~~ll~~L~--- 103 (1011)
..|-..|.++++.+.-+...-+|+.... +...-..|+-.+||+|+..... +++.+-...|+.++..+.
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~~~---~~~~~~FaaqTlr~Ki~~~F~~------Lp~~~~~slrdsl~thl~~l~ 72 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQKC---DVEALLFAAQTLRNKIQYDFSE------LPPLTHASLRDSLITHLKELH 72 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHhhHHh------cCcchhHHHHHHHHHHHHHHH
Confidence 3678899999999999999999988763 6899999999999999999987 888888889997776654
Q ss_pred hchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHH
Q 001804 104 EENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTL 159 (1011)
Q Consensus 104 ~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~ 159 (1011)
+.++.|++|++.+|+.+|-+ +| +|-+-++++++.+.+..+. -.+++.+.+|.
T Consensus 73 ~~~~~i~tQL~vavA~Lal~-~~-~W~n~I~e~v~~~~~~~~~--~~~lLeiL~Vl 124 (559)
T KOG2081|consen 73 DHPDVIRTQLAVAVAALALH-MP-EWVNPIFELVRALSNKHPA--VPILLEILKVL 124 (559)
T ss_pred hCCchHHHHHHHHHHHHHHH-hH-hhcchHHHHHHHhhcCCcc--HHHHHHHHHhC
Confidence 34449999999999999966 34 8999888888888766543 23455555554
No 22
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.83 E-value=0.0005 Score=76.63 Aligned_cols=316 Identities=13% Similarity=0.142 Sum_probs=183.7
Q ss_pred HHHHHHHHHHhhhHhhcCCCChHHHHHHH---hhHhhhccCCCchhHHHHHHHHHHhhhccCC------cchHHHHHHHH
Q 001804 484 LKDAAYGAAAYVYYELSNYLSFKDWFNGA---LSLDLSNDHPNMHIIHRKVAIILGQWVSEIK------DDTKRAVYCAL 554 (1011)
Q Consensus 484 ~keA~l~alg~~a~~l~~~~~~~~~l~~~---ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~------~~~~~~~~~~l 554 (1011)
.|+..--++|++|+.+...++-...+... .+..+.| +| ++-.-+||..-.++..+. +...-+.|..+
T Consensus 424 vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p---~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai 499 (858)
T COG5215 424 VKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CP---FRSINCSWRKENLVDHIAKAVREVESFLAKFYLAI 499 (858)
T ss_pred hhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cc---hHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHH
Confidence 34444444999998865544433223222 2334443 45 677888999888887643 23445556666
Q ss_pred Hhhcc------CCChHHHHHHHHHHHHhhhhcCC----------------------------------------------
Q 001804 555 IKLLM------DKDLSVRLAACRSLCSHIEDANF---------------------------------------------- 582 (1011)
Q Consensus 555 l~~L~------d~~~~Vr~~A~~aL~~~~~~~~~---------------------------------------------- 582 (1011)
++.|- +++--.|.++-+||.+++.-+.-
T Consensus 500 ~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~v 579 (858)
T COG5215 500 LNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGV 579 (858)
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55542 56677788888888776632210
Q ss_pred -------CccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHH
Q 001804 583 -------SERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQI 654 (1011)
Q Consensus 583 -------~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~ 654 (1011)
.+..+.|.-.++|+-++++++..+..-.-.-++.+|+.+..++++ +..|+..++|+|..-.+. .+..+..
T Consensus 580 l~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~--~d~~v~~ 657 (858)
T COG5215 580 LEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNC--TDRFVLN 657 (858)
T ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc--hhHHHHH
Confidence 112333444556666677776553222223388999999999996 889999999998875543 3455666
Q ss_pred HHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHhc--
Q 001804 655 QLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMERS-- 732 (1011)
Q Consensus 655 ~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~~-- 732 (1011)
..+..++.+..++|.+.-.|...++..+-+|+.++ -.+.++-.-.|...+-+.-+.. ......+..++.+++..
T Consensus 658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~-~~~R~lKPaiLSvFgDIAlaig---a~F~~YL~~im~L~qqas~ 733 (858)
T COG5215 658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE-ATHRDLKPAILSVFGDIALAIG---ANFESYLDMIMMLFQQASE 733 (858)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh-hhccccchHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhc
Confidence 78889999999999987777788888888888642 2334555555555554444322 22333333333333321
Q ss_pred ----------hhhHHHHH-HHHHHHHhcchhhh--hhhhHHHHHHHHHH---hhcCccc-hhHh-hHHHHHHHHHHhCCC
Q 001804 733 ----------FDHLQVAI-NIIEGYIILGGTDF--LNMHASCVAKLLDL---VVGNVND-KGLL-IILPVIDMLIQCFPI 794 (1011)
Q Consensus 733 ----------~~~l~~~~-~il~~yi~lg~~~~--l~~~~~~l~~~~~~---~l~~~~~-~~~~-~~~~l~e~ll~~~~~ 794 (1011)
.||...+. -++++|+-.|+..- +....||+.+++.. +-.+.+- ++.. .+..++.-+...+|+
T Consensus 734 ~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla~mfpk 813 (858)
T COG5215 734 LDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLAGMFPK 813 (858)
T ss_pred cCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHHHhCCC
Confidence 24544433 56779988876654 22234666555544 4443221 2222 334455555555554
Q ss_pred C------chhHHHHHHHHHHH
Q 001804 795 Q------VPPLISCSLQKLIV 809 (1011)
Q Consensus 795 ~------~~~~~~~~l~~l~~ 809 (1011)
. ...++..++.+...
T Consensus 814 gelk~~~~~dWv~d~l~~~~~ 834 (858)
T COG5215 814 GELKFGLDEDWVKDFLYGMMK 834 (858)
T ss_pred cchhhccchHHHHHHHHHHHH
Confidence 2 24566665554443
No 23
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.0073 Score=74.97 Aligned_cols=145 Identities=18% Similarity=0.330 Sum_probs=119.8
Q ss_pred HHHHHHHHHhcCC--ChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCC
Q 001804 9 PAIYTLLANSMSR--DESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGI 86 (1011)
Q Consensus 9 ~~l~~~L~~s~s~--d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i 86 (1011)
.++++++...++| +++.|..|.+-|.+++..|.-+.---.|+...+ ...+|..|-=+|-|.|+.+|.. +
T Consensus 10 ~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~s~---~~~~k~f~Lqlle~vik~~W~~------~ 80 (1041)
T KOG2020|consen 10 SELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKLST---NPILKYFALQLLENVIKFRWNS------L 80 (1041)
T ss_pred HHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhccC---CchhheeeHHHHHHHHHHhccc------C
Confidence 5677777777776 678999999999999999998888788887765 3689999999999999999998 9
Q ss_pred CHHHHHHHHHHHHhHHhh---------chHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHH
Q 001804 87 SNEEKVHLRQKLLTHLRE---------ENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFR 157 (1011)
Q Consensus 87 ~~e~K~~Ir~~ll~~L~~---------~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~ 157 (1011)
|.++|..+|.-++....+ ..+.++..++.++-.|++.|||+.||+++|++.+....+.. ..+.++.++..
T Consensus 81 ~~~~r~glk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~~i~dl~~~s~~s~~-~~el~m~Il~l 159 (1041)
T KOG2020|consen 81 PVEERVGLKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPTFIPDLAQSSKTSET-VCELSMIILLL 159 (1041)
T ss_pred CccccHHHHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcchhhhhHHHHhhcCcc-cchHHHHHHHH
Confidence 999999999999977542 24678999999999999999999999999999999875432 23455666666
Q ss_pred HHHHhh
Q 001804 158 TLKELS 163 (1011)
Q Consensus 158 v~k~~~ 163 (1011)
+.+++-
T Consensus 160 LsEdvf 165 (1041)
T KOG2020|consen 160 LSEEVF 165 (1041)
T ss_pred HHHHHh
Confidence 666643
No 24
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=98.24 E-value=1.7e-05 Score=77.58 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhhc
Q 001804 106 NNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELST 164 (1011)
Q Consensus 106 ~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~ 164 (1011)
++.|++++|.+++.|+++|||++||++++.+++.+++ ++.....++.+|..+.+++..
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~ 58 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITD 58 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999987 466677889999999999874
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.08 E-value=0.056 Score=64.50 Aligned_cols=136 Identities=12% Similarity=0.133 Sum_probs=96.7
Q ss_pred ChHHHHHHHh---hHhhhccCCCchhHHHHHHHHHHhhhccCC---cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhh
Q 001804 504 SFKDWFNGAL---SLDLSNDHPNMHIIHRKVAIILGQWVSEIK---DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 504 ~~~~~l~~~l---l~~l~~~~~~~~~lR~ra~~~lg~~~~~~~---~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~ 577 (1011)
|+.+++.+++ +..|...+... =||-||+-+.|++...+. ....+.+++.++..|+ +-+-|++|++|+.-+.
T Consensus 561 d~~~~v~~m~~~tl~rL~a~d~Dq-eVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia 637 (1233)
T KOG1824|consen 561 DASPYVKTMYDCTLQRLKATDSDQ-EVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIA 637 (1233)
T ss_pred CCChhHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHH
Confidence 3444444443 44554433222 399999999999988543 3457888888888887 4566999999998776
Q ss_pred hhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccch-HHHHHHHHHHHHhh
Q 001804 578 EDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPY-ANKLVQFFQKVWEE 645 (1011)
Q Consensus 578 ~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~-~~~L~~~L~~lw~~ 645 (1011)
... -.-.+.|.+..++..+...+.+.. +..++..+.++..+++.++. +.++ +..+...++.+..+
T Consensus 638 ~S~--l~i~l~~~l~~il~~l~~flrK~~-r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise 704 (1233)
T KOG1824|consen 638 MSP--LDIDLSPVLTEILPELASFLRKNQ-RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE 704 (1233)
T ss_pred hcc--ceeehhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence 542 123567889999999988888774 35566788999999999995 7665 56677777776654
No 26
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.07 E-value=0.019 Score=66.38 Aligned_cols=284 Identities=15% Similarity=0.134 Sum_probs=175.1
Q ss_pred ccccHHHHHHHHH---HHcc-cchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh--hcCCCChHHHHH
Q 001804 437 LRPCAEALYIVLF---ENHS-QLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE--LSNYLSFKDWFN 510 (1011)
Q Consensus 437 ~r~~a~~~l~~l~---~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~--l~~~~~~~~~l~ 510 (1011)
+|-.++.+.-.++ +..+ +.++..+-.++.+++.. +..-.--+.+-|+.++... +.+..+--.-+.
T Consensus 815 vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylge---------eypEvLgsILgAikaI~nvigm~km~pPi~dll 885 (1172)
T KOG0213|consen 815 VRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGE---------EYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLL 885 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCc---------ccHHHHHHHHHHHHHHHHhccccccCCChhhhc
Confidence 4555555544433 3333 44556666667777751 2223345566666666644 444444333456
Q ss_pred HHhhHhhhccCCCchhHHHHHHHHHHhhhcc----CCc-chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcc
Q 001804 511 GALSLDLSNDHPNMHIIHRKVAIILGQWVSE----IKD-DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSER 585 (1011)
Q Consensus 511 ~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~----~~~-~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~ 585 (1011)
+.|.|-|++.|. -+..-+.-++|+.+.. ++. +...-.|+ ++.+|..-++.+|-+|..++..+...
T Consensus 886 PrltPILknrhe---KVqen~IdLvg~IadrgpE~v~aREWMRIcfe-LlelLkahkK~iRRaa~nTfG~Iaka------ 955 (1172)
T KOG0213|consen 886 PRLTPILKNRHE---KVQENCIDLVGTIADRGPEYVSAREWMRICFE-LLELLKAHKKEIRRAAVNTFGYIAKA------ 955 (1172)
T ss_pred ccchHhhhhhHH---HHHHHHHHHHHHHHhcCcccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhHHHHh------
Confidence 678888988876 5888899999999874 232 44444454 56667677889999998888765443
Q ss_pred ccccchHHHHHHHHHHHhHhhhhhhHHHHHHHH--HHHHHhhccccchHHHHHHHHHHHHhhccc-cchHHHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLI--SILIGHVSEVIPYANKLVQFFQKVWEESSG-ESLLQIQLLIALRN 662 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l--~~ii~~~~ei~p~~~~L~~~L~~lw~~~~~-~~~~~~~~l~~l~~ 662 (1011)
+.| ..++..|++=+ +..|...++.+++ +.+.+.++ ||. .||.++++..- +..+..++|..|+.
T Consensus 956 -IGP--qdVLatLlnnL---kvqeRq~RvcTtvaIaIVaE~c~---pFt-----VLPalmneYrtPe~nVQnGVLkalsf 1021 (1172)
T KOG0213|consen 956 -IGP--QDVLATLLNNL---KVQERQNRVCTTVAIAIVAETCG---PFT-----VLPALMNEYRTPEANVQNGVLKALSF 1021 (1172)
T ss_pred -cCH--HHHHHHHHhcc---hHHHHHhchhhhhhhhhhhhhcC---chh-----hhHHHHhhccCchhHHHHhHHHHHHH
Confidence 333 34455544433 3334455565554 34445444 554 36666666543 45688999999999
Q ss_pred HHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC--CCHHHHhhHhHHHHHHHh-chhhHHHH
Q 001804 663 FVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV--MVPQLLAYFPCLVEIMER-SFDHLQVA 739 (1011)
Q Consensus 663 l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~--~~~~l~~lf~~l~~~l~~-~~~~l~~~ 739 (1011)
+..-+|+.+-.|.-.+.|+++.++...++.|. ..|..++.-+.-+.+. .-+.+.+|+..+-+-+-+ +.-.+..+
T Consensus 1022 ~FeyigemskdYiyav~PlleDAlmDrD~vhR---qta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1022 MFEYIGEMSKDYIYAVTPLLEDALMDRDLVHR---QTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred HHHHHHHHhhhHHHHhhHHHHHhhccccHHHH---HHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence 99999988777888999999999975444432 4566666666555432 234456666665443333 33344556
Q ss_pred HHHHHHHH-hcchhhhhh
Q 001804 740 INIIEGYI-ILGGTDFLN 756 (1011)
Q Consensus 740 ~~il~~yi-~lg~~~~l~ 756 (1011)
.++++++- .+|+..+++
T Consensus 1099 ~e~~eg~r~~Lg~~~~~~ 1116 (1172)
T KOG0213|consen 1099 DEAMEGLRVALGPQAMLK 1116 (1172)
T ss_pred HHHHHHHHHHhchHHHHH
Confidence 67777664 458877766
No 27
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=0.012 Score=67.53 Aligned_cols=290 Identities=13% Similarity=0.073 Sum_probs=179.6
Q ss_pred ccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHh
Q 001804 437 LRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLD 516 (1011)
Q Consensus 437 ~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~ 516 (1011)
+|.+............+++-+.-+.+.+.++++. ..+-..|++.+.-.|..+..+...-+----+...++..
T Consensus 33 v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~--------~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~ 104 (569)
T KOG1242|consen 33 VRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNS--------LHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEE 104 (569)
T ss_pred hHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc--------chhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHh
Confidence 4444444334444455655667788888888863 23557899999999999988643222101133445667
Q ss_pred hhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHH
Q 001804 517 LSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWD 596 (1011)
Q Consensus 517 l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~ 596 (1011)
+..|.+ -+|+...-++.-+........-..+.+.+..++...+..=|..|+.++..++.+.. .+.+.+ ..++.
T Consensus 105 ~~tps~---~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~~~--~~~l~ 177 (569)
T KOG1242|consen 105 LDTPSK---SVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESLKE--FGFLD 177 (569)
T ss_pred cCCCcH---HHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhhhh--hhHHH
Confidence 777766 78888888887766544434455666777777876677778999999999998753 344554 34677
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHcCCCCcch
Q 001804 597 SCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSG-ESLLQIQLLIALRNFVVALGYQSHNC 674 (1011)
Q Consensus 597 ~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~-~~~~~~~~l~~l~~l~~a~~~~~~~~ 674 (1011)
.+....+.-+....+....-+.......+|. ..||...+.| .+.....| ..-+|.+..++...+..++... ..
T Consensus 178 ~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp---~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~--aV 252 (569)
T KOG1242|consen 178 NLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILP---SILTNFGDKINKVREAAVEAAKAIMRCLSAY--AV 252 (569)
T ss_pred HHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHH---HHHHHhhccchhhhHHHHHHHHHHHHhcCcc--hh
Confidence 7776665433222222123334445556663 6777665544 44444433 4677888888888888887664 23
Q ss_pred hhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC-CCHHHHhhHhHHHHHHHhch-hhHHHHHHHHHHHHhcc
Q 001804 675 YSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV-MVPQLLAYFPCLVEIMERSF-DHLQVAINIIEGYIILG 750 (1011)
Q Consensus 675 ~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~-~~~~l~~lf~~l~~~l~~~~-~~l~~~~~il~~yi~lg 750 (1011)
..++.|++....+..-.. -.-+++++.++.+.+|. .+-.+-++.|.+...+.++- +.-++...++..|-..-
T Consensus 253 K~llpsll~~l~~~kWrt----K~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 253 KLLLPSLLGSLLEAKWRT----KMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred hHhhhhhHHHHHHHhhhh----HHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 334444444443321111 14688899999888764 55555667777777777753 44455666776666553
No 28
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.026 Score=70.59 Aligned_cols=326 Identities=14% Similarity=0.161 Sum_probs=189.6
Q ss_pred CCchhHHHHHHHHHHHhhhHhhcCC-CChHHHHHHHhhHhhh----ccCCCchhHHHHHHHHHHhhhcc---CCcchHHH
Q 001804 478 ITPGLLLKDAAYGAAAYVYYELSNY-LSFKDWFNGALSLDLS----NDHPNMHIIHRKVAIILGQWVSE---IKDDTKRA 549 (1011)
Q Consensus 478 ~~~~~~~keA~l~alg~~a~~l~~~-~~~~~~l~~~ll~~l~----~~~~~~~~lR~ra~~~lg~~~~~---~~~~~~~~ 549 (1011)
.+.-|--|-||-..+|+++..-.+. -|+ + ..|+|.|- ||++ -|++.-.-.=+..... .-++++..
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~kl~p~---l-~kLIPrLyRY~yDP~~---~Vq~aM~sIW~~Li~D~k~~vd~y~ne 1039 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEKLEPY---L-KKLIPRLYRYQYDPDK---KVQDAMTSIWNALITDSKKVVDEYLNE 1039 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHhhhhH---H-HHhhHHHhhhccCCcH---HHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 4567999999999999998763222 122 2 22455542 5555 3665433322333322 22467888
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHHHHhhcc
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFD--SKVQVLNLISILIGHVSE 627 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e--~~~~l~~~l~~ii~~~~e 627 (1011)
+++-++..|.++.-+||+++|.||..++..-+ -+.+...+|.+...+|+.++++++.- .-....++++.++-|..+
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~--~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRP--FDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88888999999999999999999999998643 45788889999999999999885322 112467888888888885
Q ss_pred -ccc-hHHHHHH-HHHHHHhhcc--ccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHH
Q 001804 628 -VIP-YANKLVQ-FFQKVWEESS--GESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSML 702 (1011)
Q Consensus 628 -i~p-~~~~L~~-~L~~lw~~~~--~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~ 702 (1011)
..+ -+.+.+. .||-+|.+.- +-.-.|--.+.++..++.+.|..--.+.+-+.|.+-.++..-.|...
T Consensus 1118 ~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vL-------- 1189 (1702)
T KOG0915|consen 1118 VTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVL-------- 1189 (1702)
T ss_pred cCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHH--------
Confidence 344 2344444 4677887542 23456667889999999998875344556777887777765333321
Q ss_pred HHHHHHhcCCCCCHHHHhhHhHHHHHHHhchhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCccchhHhhHH
Q 001804 703 LWEATISHAPVMVPQLLAYFPCLVEIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLIIL 782 (1011)
Q Consensus 703 L~~~l~~~~~~~~~~l~~lf~~l~~~l~~~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~ 782 (1011)
.++.-++..... .-...+=.....+..-+++ ++-.+-+-+..++...-+.+.+.+..-++ -..-+.+.
T Consensus 1190 --nYls~r~~~~e~---ealDt~R~s~aksspmmeT----i~~ci~~iD~~vLeelip~l~el~R~sVg---l~Tkvg~A 1257 (1702)
T KOG0915|consen 1190 --NYLSLRLINIET---EALDTLRASAAKSSPMMET----INKCINYIDISVLEELIPRLTELVRGSVG---LGTKVGCA 1257 (1702)
T ss_pred --HHHHHhhhhhHH---HHHHHHHHhhhcCCcHHHH----HHHHHHhhhHHHHHHHHHHHHHHHhccCC---CCcchhHH
Confidence 111111100000 0000000000111112222 22222222223333334444444443333 22223344
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHh
Q 001804 783 PVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVM 839 (1011)
Q Consensus 783 ~l~e~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~ 839 (1011)
+.+..+.+.++.++.||...++..++... +++. .+++..+....|.++-+
T Consensus 1258 ~fI~~L~~r~~~emtP~sgKll~al~~g~----~dRN---esv~kafAsAmG~L~k~ 1307 (1702)
T KOG0915|consen 1258 SFISLLVQRLGSEMTPYSGKLLRALFPGA----KDRN---ESVRKAFASAMGYLAKF 1307 (1702)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHhhcc----cccc---HHHHHHHHHHHHHHHhc
Confidence 45666666678889999888877776543 2232 35666666667766654
No 29
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.012 Score=67.59 Aligned_cols=259 Identities=15% Similarity=0.141 Sum_probs=168.7
Q ss_pred hhHhhhccCCCchhHHHH-HHHHHHhhhccC---CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccc
Q 001804 513 LSLDLSNDHPNMHIIHRK-VAIILGQWVSEI---KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFT 588 (1011)
Q Consensus 513 ll~~l~~~~~~~~~lR~r-a~~~lg~~~~~~---~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~ 588 (1011)
+-...++..+ ..||. +....-.++..+ .+.+..++++.++.+..|....||.+|..|.+.+.+.. .....+
T Consensus 179 l~~ai~dk~~---~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~--~~~aVK 253 (569)
T KOG1242|consen 179 LSKAIIDKKS---ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCL--SAYAVK 253 (569)
T ss_pred HHHHhcccch---hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhc--Ccchhh
Confidence 3444555544 45554 333333333332 34678889999999999999999999999999887764 355666
Q ss_pred cchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHH-HHhhccccchHHHHHHHHHHHHHHH
Q 001804 589 DLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQK-VWEESSGESLLQIQLLIALRNFVVA 666 (1011)
Q Consensus 589 p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~-lw~~~~~~~~~~~~~l~~l~~l~~a 666 (1011)
-++++++..+..- .-.+|+..++.++.+++.... +.-+...++|.+.. +|+ .+..++-+-.+||..+..-
T Consensus 254 ~llpsll~~l~~~-----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D---T~~evr~a~~~~l~~~~sv 325 (569)
T KOG1242|consen 254 LLLPSLLGSLLEA-----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD---TKPEVRKAGIETLLKFGSV 325 (569)
T ss_pred HhhhhhHHHHHHH-----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc---CCHHHHHHHHHHHHHHHHh
Confidence 6777777776554 235688889999988877764 66677888888877 554 4788888899999998887
Q ss_pred cCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHh-chhhHHHHHHHHHH
Q 001804 667 LGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMER-SFDHLQVAINIIEG 745 (1011)
Q Consensus 667 ~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~-~~~~l~~~~~il~~ 745 (1011)
+.+. -...++|.+-.|+.. |. ...+++++.+.....-.-.-.|.+--+.|.+-..+.+ +++.-+....|++|
T Consensus 326 idN~---dI~~~ip~Lld~l~d--p~--~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidN 398 (569)
T KOG1242|consen 326 IDNP---DIQKIIPTLLDALAD--PS--CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDN 398 (569)
T ss_pred hccH---HHHHHHHHHHHHhcC--cc--cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHH
Confidence 7763 245567777777753 22 1335666666655544332345666677888877765 66777888889988
Q ss_pred HHhcc-hhhhhhhhHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHh
Q 001804 746 YIILG-GTDFLNMHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQC 791 (1011)
Q Consensus 746 yi~lg-~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~ 791 (1011)
...+= +..-+..+.+.+..-++..+.+..++....+.+.+..+++.
T Consensus 399 m~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 399 MCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 77764 33334445555555555555444333333334444444433
No 30
>PTZ00429 beta-adaptin; Provisional
Probab=97.76 E-value=0.23 Score=60.89 Aligned_cols=149 Identities=10% Similarity=0.048 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHhhc-CCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccc--------
Q 001804 8 LPAIYTLLANSMSRDESIRKPAEAALSQSES-RPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWR-------- 78 (1011)
Q Consensus 8 ~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~-~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~-------- 78 (1011)
.++|.+.| .|+|...++.|=..+-.... --+......+++..-+. .+..+|.+.-+|+.|+-+.+=.
T Consensus 34 ~~ELr~~L---~s~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S-~d~elKKLvYLYL~~ya~~~pelalLaINt 109 (746)
T PTZ00429 34 GAELQNDL---NGTDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPS-TDLELKKLVYLYVLSTARLQPEKALLAVNT 109 (746)
T ss_pred HHHHHHHH---HCCCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcccChHHHHHHHHH
Confidence 45565555 36677777777776665543 22333333333332221 2688999999999988654321
Q ss_pred --cc-cCC-------------CCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCch--hhHHHHHHHh
Q 001804 79 --NR-RDS-------------VGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWP--QLFSVLAQQL 140 (1011)
Q Consensus 79 --~~-~~~-------------~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP--~Ll~~L~~~l 140 (1011)
++ .++ .--.++--+++-..+..++.++++-||+..+.++.+|.+.+ |+--+ ++++.|.+++
T Consensus 110 l~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~~~~~L~~LL 188 (746)
T PTZ00429 110 FLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQDFKKDLVELL 188 (746)
T ss_pred HHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccchHHHHHHHh
Confidence 00 000 11123333444445556677789999999999999998764 43332 4577888888
Q ss_pred ccCCHHHHhHHHHHHHHHHHH
Q 001804 141 QAADVLTSHRIFMILFRTLKE 161 (1011)
Q Consensus 141 ~s~~~~~~~~al~~L~~v~k~ 161 (1011)
...|+..+.+|+.+|+.|.+.
T Consensus 189 ~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 189 NDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred cCCCccHHHHHHHHHHHHHHh
Confidence 888988889999999999764
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.75 E-value=0.016 Score=68.60 Aligned_cols=150 Identities=21% Similarity=0.223 Sum_probs=102.4
Q ss_pred HHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc--c--hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCC
Q 001804 507 DWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD--D--TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANF 582 (1011)
Q Consensus 507 ~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~--~--~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~ 582 (1011)
+.+.++|...|..++| .||+-+|+.+++....-+. + .-..++..++.++.|+|..|...|+.+|+.+......
T Consensus 76 ~~~~~~L~~gL~h~~~---~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSP---KVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHHHhcCCCH---HHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 4466677888888877 7999999999998764211 1 1256899999999999999999999999999875321
Q ss_pred CccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchHHH--HHHHHHHHHhhccccchHHHHHHHHH
Q 001804 583 SERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYANK--LVQFFQKVWEESSGESLLQIQLLIAL 660 (1011)
Q Consensus 583 ~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~~~--L~~~L~~lw~~~~~~~~~~~~~l~~l 660 (1011)
-...|.+.+ +..|-.++.+. ....+.++++++..+...-.+...+... +++.+..... +||.+++..+++++
T Consensus 153 ~~~l~~~~~---~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~--~dDiLvqlnalell 226 (503)
T PF10508_consen 153 LEQLFDSNL---LSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD--SDDILVQLNALELL 226 (503)
T ss_pred HHHHhCcch---HHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc--CccHHHHHHHHHHH
Confidence 111223222 66666777663 2345777888777765433333333332 4444444333 36788999999999
Q ss_pred HHHHH
Q 001804 661 RNFVV 665 (1011)
Q Consensus 661 ~~l~~ 665 (1011)
+.++.
T Consensus 227 ~~La~ 231 (503)
T PF10508_consen 227 SELAE 231 (503)
T ss_pred HHHHc
Confidence 99988
No 32
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.68 E-value=0.031 Score=64.70 Aligned_cols=228 Identities=13% Similarity=0.149 Sum_probs=123.2
Q ss_pred ccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcC-CCChHHHHHHHhhH
Q 001804 437 LRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSN-YLSFKDWFNGALSL 515 (1011)
Q Consensus 437 ~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~-~~~~~~~l~~~ll~ 515 (1011)
+|...+..|-.++.+++ +|.++++++..-. +..+|..|..++..+..+|.-+.- .++.-.-+...+-.
T Consensus 492 VRnttarafavvasalg---ip~llpfLkavc~--------SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~ 560 (1172)
T KOG0213|consen 492 VRNTTARAFAVVASALG---IPALLPFLKAVCG--------SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH 560 (1172)
T ss_pred HHHHHHHHHHHHHHHhC---cHHHHHHHHHHhc--------cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence 66677777777777776 3455555555432 235799999999999888854321 12221124444556
Q ss_pred hhhccCCCchhHHHHHHHHHHhhhccCCc---chHHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCcccccc-c
Q 001804 516 DLSNDHPNMHIIHRKVAIILGQWVSEIKD---DTKRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTD-L 590 (1011)
Q Consensus 516 ~l~~~~~~~~~lR~ra~~~lg~~~~~~~~---~~~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p-~ 590 (1011)
.+.|.+. .+|..++.+++..++...| +.+..++..+-.-.. +..+. =.+=..|+..+|-.. ..+... |
T Consensus 561 gl~De~q---kVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~-laafLkAigyliplm---d~eya~yy 633 (1172)
T KOG0213|consen 561 GLKDEQQ---KVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKE-LAAFLKAIGYLIPLM---DAEYASYY 633 (1172)
T ss_pred hhcccch---hhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChH-HHHHHHHHhhccccc---cHHHHHHh
Confidence 6777765 7999999999999885433 344444444433332 22221 111123334343322 112222 2
Q ss_pred hHHHHHHHHHHHhHhhh--hhhHHHHHHHHHHHHHhhccccc-h--HHHHHHHHHHHHhhc--cccchHHHHHHHHHHHH
Q 001804 591 LPICWDSCFKLVEEVQE--FDSKVQVLNLISILIGHVSEVIP-Y--ANKLVQFFQKVWEES--SGESLLQIQLLIALRNF 663 (1011)
Q Consensus 591 l~~il~~L~~ll~~~~~--~e~~~~l~~~l~~ii~~~~ei~p-~--~~~L~~~L~~lw~~~--~~~~~~~~~~l~~l~~l 663 (1011)
-..+| +.++.+.+. +|.|..++.++..++...| +.| | .+.+-..+...|..- .|...-+ ++.++-..+
T Consensus 634 Trevm---lil~rEf~sPDeemkkivLKVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~rrmA~drr~yk-qlv~ttv~i 708 (1172)
T KOG0213|consen 634 TREVM---LILIREFGSPDEEMKKIVLKVVKQCCATDG-VEPAYIRFDILPEFFFSFWGRRMALDRRNYK-QLVDTTVEI 708 (1172)
T ss_pred HHHHH---HHHHHhhCCChHHHHHHHHHHHHHHhcccC-CCHHHHhhhhhHHHHhhhhhhhhhccccchh-hHHHHHHHH
Confidence 22333 344555543 3456667887777766665 444 3 334444566789752 2222222 345555555
Q ss_pred HHHcCC-------------CCcchhhhHHHHHHhhcC
Q 001804 664 VVALGY-------------QSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 664 ~~a~~~-------------~~~~~~~~~~Pvi~~~l~ 687 (1011)
+.-+|. +++.|..+..-.+.+++.
T Consensus 709 a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~ 745 (1172)
T KOG0213|consen 709 AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVG 745 (1172)
T ss_pred HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHh
Confidence 555554 445555556666666654
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.67 E-value=0.054 Score=61.22 Aligned_cols=330 Identities=14% Similarity=0.128 Sum_probs=187.2
Q ss_pred HHHHHHHHHhhhHhhcCCCChHHHHHHHh---hHhhhccCCCchhHHHHHHHHHHhhhccCC---cchHHHHHHHHHhhc
Q 001804 485 KDAAYGAAAYVYYELSNYLSFKDWFNGAL---SLDLSNDHPNMHIIHRKVAIILGQWVSEIK---DDTKRAVYCALIKLL 558 (1011)
Q Consensus 485 keA~l~alg~~a~~l~~~~~~~~~l~~~l---l~~l~~~~~~~~~lR~ra~~~lg~~~~~~~---~~~~~~~~~~ll~~L 558 (1011)
|.|++.++.+++-++..... .++...+ ++.+.|++. -+|.-||-.+-..+.... ..++..++..+-.+.
T Consensus 60 rkGgLiGlAA~~iaLg~~~~--~Y~~~iv~Pv~~cf~D~d~---~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls 134 (675)
T KOG0212|consen 60 RKGGLIGLAAVAIALGIKDA--GYLEKIVPPVLNCFSDQDS---QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS 134 (675)
T ss_pred ccchHHHHHHHHHHhccccH--HHHHHhhHHHHHhccCccc---eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh
Confidence 44999999998888764322 2455555 445667765 489999999887777432 246889999999999
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCCCcc-ccccchHHHHHHHHHHHhH---hhhhhhHHHHHHHHHHHHHhhc-cccchHH
Q 001804 559 MDKDLSVRLAACRSLCSHIEDANFSER-DFTDLLPICWDSCFKLVEE---VQEFDSKVQVLNLISILIGHVS-EVIPYAN 633 (1011)
Q Consensus 559 ~d~~~~Vr~~A~~aL~~~~~~~~~~~~-~l~p~l~~il~~L~~ll~~---~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~ 633 (1011)
.|.|.-||-.| .-+..++.+..-... .| . ++.++.++++ +....++..+++=+..+-..-+ ++.-|..
T Consensus 135 aDsd~~V~~~a-eLLdRLikdIVte~~~tF--s----L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~ 207 (675)
T KOG0212|consen 135 ADSDQNVRGGA-ELLDRLIKDIVTESASTF--S----LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLP 207 (675)
T ss_pred cCCccccccHH-HHHHHHHHHhcccccccc--C----HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcch
Confidence 99999999655 556666654311111 12 1 2222233322 1234556677777776654444 4555666
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcch-hhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCC
Q 001804 634 KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNC-YSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAP 712 (1011)
Q Consensus 634 ~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~-~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~ 712 (1011)
.+.+.|.+.... ...-++.-+=.+++.++..+.++|..+ ++-+.|++-.-+.. ....+-.-|+--+...++-.+
T Consensus 208 ~~ldGLf~~LsD--~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~s---s~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 208 SLLDGLFNMLSD--SSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQS---SEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred HHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccC---CcHHHHHHHHHHHHHHhcCCC
Confidence 776666665442 233444445577889999998887653 33444444333322 122344455544444554443
Q ss_pred C-CCHHHHhhHhHHHHHHHhchh-hHHHHHHHHHH-HHhcchhhhh-hh-hHHHHHHHHHHhhcCccchhHhhHHHHHHH
Q 001804 713 V-MVPQLLAYFPCLVEIMERSFD-HLQVAINIIEG-YIILGGTDFL-NM-HASCVAKLLDLVVGNVNDKGLLIILPVIDM 787 (1011)
Q Consensus 713 ~-~~~~l~~lf~~l~~~l~~~~~-~l~~~~~il~~-yi~lg~~~~l-~~-~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ 787 (1011)
. +-+.+-.++..+++|+.++.+ +...+-..+.. ...+-.+... +. --..+..++.+.+.+-..+..+++..-+-.
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 2 444455677778888866433 23332222221 1111111111 11 112455566666655556666777777777
Q ss_pred HHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHH
Q 001804 788 LIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILV 838 (1011)
Q Consensus 788 ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~ 838 (1011)
+..+.|+++--...+++..++..+.+ ++ ..+..-.+.+++.+.-
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd------~s-d~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSD------RS-DEVVLLALSLLASICS 406 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcC------ch-hHHHHHHHHHHHHHhc
Confidence 88888887766666667777665522 11 2355555677776653
No 34
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.45 E-value=0.029 Score=67.51 Aligned_cols=219 Identities=17% Similarity=0.199 Sum_probs=127.7
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHH
Q 001804 456 LGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIIL 535 (1011)
Q Consensus 456 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~l 535 (1011)
+...+.+.+..-++ +++...|-.|+.++|.++.. +.-+-+.+.+.+.+.+++| .||+.|+-++
T Consensus 76 ~~~l~~n~l~kdl~---------~~n~~~~~lAL~~l~~i~~~-----~~~~~l~~~v~~ll~~~~~---~VRk~A~~~l 138 (526)
T PF01602_consen 76 LLILIINSLQKDLN---------SPNPYIRGLALRTLSNIRTP-----EMAEPLIPDVIKLLSDPSP---YVRKKAALAL 138 (526)
T ss_dssp HHHHHHHHHHHHHC---------SSSHHHHHHHHHHHHHH-SH-----HHHHHHHHHHHHHHHSSSH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---------CCCHHHHHHHHhhhhhhccc-----chhhHHHHHHHHHhcCCch---HHHHHHHHHH
Confidence 44556666766664 24568899999999998733 1122356667778888887 9999999999
Q ss_pred HhhhccCCcchHHH-HHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHH
Q 001804 536 GQWVSEIKDDTKRA-VYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQV 614 (1011)
Q Consensus 536 g~~~~~~~~~~~~~-~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l 614 (1011)
.++... .|+..+. +.+.+..+|.|+|..|+.+|+.++..+ +. .++...+.++.++..|.+++..... ...
T Consensus 139 ~~i~~~-~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~---~~~~~~~~~~~~~~~L~~~l~~~~~----~~q 209 (526)
T PF01602_consen 139 LKIYRK-DPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KC---NDDSYKSLIPKLIRILCQLLSDPDP----WLQ 209 (526)
T ss_dssp HHHHHH-CHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HC---THHHHTTHHHHHHHHHHHHHTCCSH----HHH
T ss_pred HHHhcc-CHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-cc---CcchhhhhHHHHHHHhhhcccccch----HHH
Confidence 999875 3444444 788899999999999999999999988 21 1223336667777777776644422 112
Q ss_pred HHHHHHHHHhhccccc-hH--HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCC
Q 001804 615 LNLISILIGHVSEVIP-YA--NKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSP 691 (1011)
Q Consensus 615 ~~~l~~ii~~~~ei~p-~~--~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~ 691 (1011)
...++.+. ++....| .. ..+++.+..+.++. ...+ +++|+..+.. +.+.+. +...+.+.+...+...++
T Consensus 210 ~~il~~l~-~~~~~~~~~~~~~~~i~~l~~~l~s~--~~~V---~~e~~~~i~~-l~~~~~-~~~~~~~~L~~lL~s~~~ 281 (526)
T PF01602_consen 210 IKILRLLR-RYAPMEPEDADKNRIIEPLLNLLQSS--SPSV---VYEAIRLIIK-LSPSPE-LLQKAINPLIKLLSSSDP 281 (526)
T ss_dssp HHHHHHHT-TSTSSSHHHHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHH-HSSSHH-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHH-hcccCChhhhhHHHHHHHHHHHhhcc--ccHH---HHHHHHHHHH-hhcchH-HHHhhHHHHHHHhhcccc
Confidence 22232222 2221111 22 34666665555421 2223 3455555443 333322 444455555555543222
Q ss_pred CcchhhhhHHHHHHHHHhcC
Q 001804 692 DELNLLEDSMLLWEATISHA 711 (1011)
Q Consensus 692 ~~~~l~e~~l~L~~~l~~~~ 711 (1011)
. .---+++.+..+....
T Consensus 282 n---vr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 282 N---VRYIALDSLSQLAQSN 298 (526)
T ss_dssp H---HHHHHHHHHHHHCCHC
T ss_pred h---hehhHHHHHHHhhccc
Confidence 2 2233566666565443
No 35
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.30 E-value=0.0009 Score=59.31 Aligned_cols=76 Identities=18% Similarity=0.202 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhccCC---cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhH
Q 001804 528 HRKVAIILGQWVSEIK---DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEE 604 (1011)
Q Consensus 528 R~ra~~~lg~~~~~~~---~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 604 (1011)
|..+.+.++..+..++ .+++..+++.++.++.|+|.+||.+||.||-++.... .+.+.||.+.|+..|++++..
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcC
Confidence 5667777777765432 4678999999999999999999999999999999875 568889999999999999988
Q ss_pred hh
Q 001804 605 VQ 606 (1011)
Q Consensus 605 ~~ 606 (1011)
.+
T Consensus 80 ~d 81 (97)
T PF12755_consen 80 PD 81 (97)
T ss_pred Cc
Confidence 74
No 36
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.30 E-value=0.24 Score=57.81 Aligned_cols=294 Identities=13% Similarity=0.150 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHh
Q 001804 526 IIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEV 605 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 605 (1011)
-.++=|+-+|.+|...| |+.....+.+++.+..|.|..||..|.++|..+|.+- + .+++.+...|.+|++.-
T Consensus 37 k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~---~----~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN---P----EHVSKVADVLVQLLQTD 108 (556)
T ss_dssp HHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---------T-HHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH---H----HHHhHHHHHHHHHHhcc
Confidence 58999999999998877 4678889999999999999999999999999999762 1 25577777777777754
Q ss_pred hhhhhHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCC----cchhhhHH
Q 001804 606 QEFDSKVQVLNLISILIGHVSE--VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQS----HNCYSMLL 679 (1011)
Q Consensus 606 ~~~e~~~~l~~~l~~ii~~~~e--i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~----~~~~~~~~ 679 (1011)
+..|... |-.+|.++...-.. +...+.+|.+ ...++..+|..++..|..=+..++.+- .....++.
T Consensus 109 d~~E~~~-v~~sL~~ll~~d~k~tL~~lf~~i~~-------~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~ 180 (556)
T PF05918_consen 109 DPVELDA-VKNSLMSLLKQDPKGTLTGLFSQIES-------SKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIV 180 (556)
T ss_dssp -HHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHH----------HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHh-------cccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHH
Confidence 4444333 55566555543331 3333333332 122355678888888877777776542 34667888
Q ss_pred HHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC-----CCHHHHhhHhHHHHHHH--h-----chhhHHHHHHHHHHHH
Q 001804 680 PILRRGIDINSPDELNLLEDSMLLWEATISHAPV-----MVPQLLAYFPCLVEIME--R-----SFDHLQVAINIIEGYI 747 (1011)
Q Consensus 680 Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~-----~~~~l~~lf~~l~~~l~--~-----~~~~l~~~~~il~~yi 747 (1011)
-.|..+++. +-.+=++++-.++.+.+. ..+..-.|++.+..-.+ . +.+.+..++.|+..=+
T Consensus 181 ~~ikkvL~D-------VTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Al 253 (556)
T PF05918_consen 181 DEIKKVLQD-------VTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQAL 253 (556)
T ss_dssp HHHHHHCTT---------HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHh-------ccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhh
Confidence 889988852 223445566666666553 23345567777765432 1 2356766666665422
Q ss_pred hcchhhhhhhhHHHHHH-HHHHhhc---CccchhHhhHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHhcCCCCCCch-
Q 001804 748 ILGGTDFLNMHASCVAK-LLDLVVG---NVNDKGLLIILPVIDMLIQCF-PIQVPPLISCSLQKLIVICLSGGDDHEPS- 821 (1011)
Q Consensus 748 ~lg~~~~l~~~~~~l~~-~~~~~l~---~~~~~~~~~~~~l~e~ll~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~- 821 (1011)
-+-.. ......++. ++.+++. ++.++.-...++++--+...+ +.+...+++.+++.+...+-. + ...|+
T Consensus 254 p~fs~---~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~-~-~~~~~l 328 (556)
T PF05918_consen 254 PFFSR---GVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPS-K-KTEPKL 328 (556)
T ss_dssp GG-BT---TB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-----------
T ss_pred HHhcC---CCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCC-C-CCCCcc
Confidence 22110 013344433 4445554 343333333333332222222 223466777666666433211 1 11222
Q ss_pred hHHHHHHHHHHHHHHHHhChHHHHHH
Q 001804 822 KTAVKASSAAILARILVMNANYLAQL 847 (1011)
Q Consensus 822 ~~~~~~~~~~vl~rl~~~~~~~~~~~ 847 (1011)
.-+..+-++.+|-+++...|+.+..+
T Consensus 329 ~fs~vEcLL~afh~La~k~p~~~~~l 354 (556)
T PF05918_consen 329 QFSYVECLLYAFHQLARKSPNSLNFL 354 (556)
T ss_dssp -HHHHHHHHHHHHHHHTT-THHHH--
T ss_pred cchHhhHHHHHHHHHhhhCcchhhhH
Confidence 13466778888999999999866543
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.29 E-value=0.69 Score=54.87 Aligned_cols=203 Identities=14% Similarity=0.108 Sum_probs=120.2
Q ss_pred HHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc-chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcccccc
Q 001804 511 GALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD-DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTD 589 (1011)
Q Consensus 511 ~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~-~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p 589 (1011)
+.++..+++.+.. .+ .-+|-+++++.+...+ ...+.+.+.+...|.+++..||.-|+.++..++++.+ ....
T Consensus 41 ~~lf~~L~~~~~e--~v-~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~----~~~~ 113 (503)
T PF10508_consen 41 PVLFDCLNTSNRE--QV-ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE----GAAQ 113 (503)
T ss_pred HHHHHHHhhcChH--HH-HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH----HHHH
Confidence 3466667655432 23 5678889998886543 4578888888999999999999999999999887631 2111
Q ss_pred ch--HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchHHHH-----HHHHHHHHhhccccchHHHHHHHHHHH
Q 001804 590 LL--PICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKL-----VQFFQKVWEESSGESLLQIQLLIALRN 662 (1011)
Q Consensus 590 ~l--~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~~~L-----~~~L~~lw~~~~~~~~~~~~~l~~l~~ 662 (1011)
-+ ..++..++.++...+. +.......+|..++. ..+....+ ...|.++..+. +...|..+++++..
T Consensus 114 ~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~----~~~~~~~l~~~~~~~~L~~l~~~~--~~~vR~Rv~el~v~ 186 (503)
T PF10508_consen 114 LLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLAS----HPEGLEQLFDSNLLSKLKSLMSQS--SDIVRCRVYELLVE 186 (503)
T ss_pred HhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhC----CchhHHHHhCcchHHHHHHHHhcc--CHHHHHHHHHHHHH
Confidence 11 4466777777766532 212223444444442 22223333 55555555432 45778788888877
Q ss_pred HHHHcCCCCcchhh--hHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHH--hhHhHHHHHHHhc
Q 001804 663 FVVALGYQSHNCYS--MLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLL--AYFPCLVEIMERS 732 (1011)
Q Consensus 663 l~~a~~~~~~~~~~--~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~--~lf~~l~~~l~~~ 732 (1011)
+...-... ..+.. =+++.+-..++. +-.-+--++++++..+.. .+.-..-|. .+++.|...+.+.
T Consensus 187 i~~~S~~~-~~~~~~sgll~~ll~eL~~---dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 187 IASHSPEA-AEAVVNSGLLDLLLKELDS---DDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHhcCHHH-HHHHHhccHHHHHHHHhcC---ccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 64422111 11111 144444445543 222355689999999987 332222333 4889998888763
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.13 E-value=0.00086 Score=52.86 Aligned_cols=51 Identities=33% Similarity=0.304 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhhccCC---cchHHHHHHHHHhhccCCChHHHHHHHHHHHHh
Q 001804 526 IIHRKVAIILGQWVSEIK---DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSH 576 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~~---~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~ 576 (1011)
-+|..|+|.+|+.+...+ ..+.+.+++.++.+|.|++..||.+||.||.++
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 589999999999776432 357889999999999988889999999999753
No 39
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.09 E-value=0.061 Score=61.11 Aligned_cols=265 Identities=14% Similarity=0.115 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh--hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHH
Q 001804 456 LGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE--LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAI 533 (1011)
Q Consensus 456 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~--l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~ 533 (1011)
.+..+-.++.+++.. ...-.--+.+.|+.++... +...-|--+.+.+.|.|-|++.|. -+..-+.-
T Consensus 643 ~l~klg~iLyE~lge---------~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~---Kv~~nti~ 710 (975)
T COG5181 643 ELAKLGNILYENLGE---------DYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQ---KVVANTIA 710 (975)
T ss_pred HHHHHhHHHHHhcCc---------ccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhH---HHhhhHHH
Confidence 345555566666641 2223344566677666543 332222223355677888888776 46777888
Q ss_pred HHHhhhcc----CCc-chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhh
Q 001804 534 ILGQWVSE----IKD-DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEF 608 (1011)
Q Consensus 534 ~lg~~~~~----~~~-~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~ 608 (1011)
++|..+.. +++ +...-.|+ ++..|..-++-+|-.|..++..+-+ .+.| ..++..|++=++ ..
T Consensus 711 lvg~I~~~~peyi~~rEWMRIcfe-Lvd~Lks~nKeiRR~A~~tfG~Is~-------aiGP--qdvL~~LlnnLk---vq 777 (975)
T COG5181 711 LVGTICMNSPEYIGVREWMRICFE-LVDSLKSWNKEIRRNATETFGCISR-------AIGP--QDVLDILLNNLK---VQ 777 (975)
T ss_pred HHHHHHhcCcccCCHHHHHHHHHH-HHHHHHHhhHHHHHhhhhhhhhHHh-------hcCH--HHHHHHHHhcch---HH
Confidence 88888764 232 34444444 5666777789999999888775544 3333 345555544443 33
Q ss_pred hhHHHHHHH--HHHHHHhhccccchHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhh
Q 001804 609 DSKVQVLNL--ISILIGHVSEVIPYANKLVQFFQKVWEESSG-ESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRG 685 (1011)
Q Consensus 609 e~~~~l~~~--l~~ii~~~~ei~p~~~~L~~~L~~lw~~~~~-~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~ 685 (1011)
|...++.++ |+.+++.+| ||. .||.+..+.+. +..+..++|.+|..+..-+|+.+-.|.-.+.|+++.+
T Consensus 778 eRq~RvctsvaI~iVae~cg---pfs-----VlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDA 849 (975)
T COG5181 778 ERQQRVCTSVAISIVAEYCG---PFS-----VLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDA 849 (975)
T ss_pred HHHhhhhhhhhhhhhHhhcC---chh-----hHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 444445544 445555555 553 24555555543 4668899999999999999998878888999999999
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHhcCCC-CC-HHHHhhHhHHHHHHHhchh-hHHHHHHHHHHHHh-cchhhhhh
Q 001804 686 IDINSPDELNLLEDSMLLWEATISHAPV-MV-PQLLAYFPCLVEIMERSFD-HLQVAINIIEGYII-LGGTDFLN 756 (1011)
Q Consensus 686 l~~~~~~~~~l~e~~l~L~~~l~~~~~~-~~-~~l~~lf~~l~~~l~~~~~-~l~~~~~il~~yi~-lg~~~~l~ 756 (1011)
+...+|.|. ..|..++.-+.-+++. .. +.+.+|+.+|.+-+-+... ....+.+.++++.. +|+..++.
T Consensus 850 ltDrD~vhR---qta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~ 921 (975)
T COG5181 850 LTDRDPVHR---QTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMK 921 (975)
T ss_pred hcccchHHH---HHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHH
Confidence 976555543 5677777777777653 22 3456666666544443333 33444566666553 35555544
No 40
>PRK09687 putative lyase; Provisional
Probab=97.06 E-value=0.075 Score=57.60 Aligned_cols=84 Identities=20% Similarity=0.059 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhh-c
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKL-L 558 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~-L 558 (1011)
++...|.++..+++...+. . ..+.+...++++++ .+|+-++|.+|++... +.....+++.+..+ +
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-----~----~~~~l~~ll~~~d~---~vR~~A~~aLg~lg~~--~~~~~~a~~~L~~l~~ 100 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-----D----VFRLAIELCSSKNP---IERDIGADILSQLGMA--KRCQDNVFNILNNLAL 100 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-----h----HHHHHHHHHhCCCH---HHHHHHHHHHHhcCCC--ccchHHHHHHHHHHHh
Confidence 3456777777777665421 0 11223444556555 6777777777776431 11134555666555 4
Q ss_pred cCCChHHHHHHHHHHHHhh
Q 001804 559 MDKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 559 ~d~~~~Vr~~A~~aL~~~~ 577 (1011)
.|++..||..|+.+|..+.
T Consensus 101 ~D~d~~VR~~A~~aLG~~~ 119 (280)
T PRK09687 101 EDKSACVRASAINATGHRC 119 (280)
T ss_pred cCCCHHHHHHHHHHHhccc
Confidence 5777777777777777654
No 41
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.93 E-value=0.017 Score=60.94 Aligned_cols=192 Identities=14% Similarity=0.113 Sum_probs=107.0
Q ss_pred CchhHHHHHHHHHHHhhhHhhcCCCChHHH---HH---HHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc---chHHH
Q 001804 479 TPGLLLKDAAYGAAAYVYYELSNYLSFKDW---FN---GALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD---DTKRA 549 (1011)
Q Consensus 479 ~~~~~~keA~l~alg~~a~~l~~~~~~~~~---l~---~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~---~~~~~ 549 (1011)
..+|..|..++.-+-.+..+-.+....+.+ +. ..+...+.+... -|-+-||-+++..+..+.. .+...
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs---~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS---KVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 468999999998887776553122222222 22 233445555533 3777899999999885443 34677
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc--
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPIC-WDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-- 626 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~i-l~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-- 626 (1011)
+++.++..+.|....||.+|..+|..+++... +.+.+ +..+...++ -.....+..++..+..++++.+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--------~~~~~~~~~l~~~~~-~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS--------YSPKILLEILSQGLK-SKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS---------H--HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--------cHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHccch
Confidence 88889999999999999999999999998752 22344 333333333 2334556678889999998888
Q ss_pred -c-ccch--HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHh
Q 001804 627 -E-VIPY--ANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRR 684 (1011)
Q Consensus 627 -e-i~p~--~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~ 684 (1011)
. +.+. ...+.+.+....++ .++-+|...-+++..+-...++....+...+-|-++.
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D--~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk 225 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSD--ADPEVREAARECLWALYSHFPERAESILSMLDPNIQK 225 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTS--S-HHHHHHHHHHHHHHHHHH-HHH-------------
T ss_pred HhhhcccchHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccc
Confidence 2 3332 35677777665542 3567787788888888777776544444444444443
No 42
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.52 Score=59.64 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHH---hhHhhhccCCCchhHHHH
Q 001804 454 QLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGA---LSLDLSNDHPNMHIIHRK 530 (1011)
Q Consensus 454 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~---ll~~l~~~~~~~~~lR~r 530 (1011)
..+-.++.+++++.+-+. .+..||.|||+.+|+.-+-.+ .+..++.+.+..+ +..-+.|=+..-+-.--+
T Consensus 1031 ~~vd~y~neIl~eLL~~l------t~kewRVReasclAL~dLl~g-~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~ 1103 (1702)
T KOG0915|consen 1031 KVVDEYLNEILDELLVNL------TSKEWRVREASCLALADLLQG-RPFDQVKEKLPELWEAAFRVMDDIKESVREAADK 1103 (1702)
T ss_pred HHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666677766433 236799999999998765433 1111111111111 121112212221234456
Q ss_pred HHHHHHhhhcc-CCc---chHHHHHHHHHhhccCC-----ChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHH
Q 001804 531 VAIILGQWVSE-IKD---DTKRAVYCALIKLLMDK-----DLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKL 601 (1011)
Q Consensus 531 a~~~lg~~~~~-~~~---~~~~~~~~~ll~~L~d~-----~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~l 601 (1011)
+|-++|..+-+ ++. .--..++..++.+|-|+ -.-||-.+...+-.+++. ++..++||++.++-.|+.+
T Consensus 1104 ~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks---sg~~lkP~~~~LIp~ll~~ 1180 (1702)
T KOG0915|consen 1104 AARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS---SGKELKPHFPKLIPLLLNA 1180 (1702)
T ss_pred HHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh---chhhhcchhhHHHHHHHHH
Confidence 77788877664 332 22455666666666543 345776666665555554 5779999999999988887
Q ss_pred HhHh
Q 001804 602 VEEV 605 (1011)
Q Consensus 602 l~~~ 605 (1011)
+.+.
T Consensus 1181 ~s~l 1184 (1702)
T KOG0915|consen 1181 YSEL 1184 (1702)
T ss_pred cccc
Confidence 7654
No 43
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.85 E-value=0.6 Score=56.08 Aligned_cols=269 Identities=14% Similarity=0.117 Sum_probs=149.3
Q ss_pred HHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhc-cCCcchHHHHHHHHHhhccCCChHH
Q 001804 487 AAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS-EIKDDTKRAVYCALIKLLMDKDLSV 565 (1011)
Q Consensus 487 A~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~-~~~~~~~~~~~~~ll~~L~d~~~~V 565 (1011)
-++.+++..++.......+-+.+....+..+.-..| +.+|.+||-.+.-|++ ..-.+..+.++.+++++..+..--|
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~--~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~ev 546 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVP--PPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEV 546 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCC--CchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHH
Confidence 566777766655322223211122222444433322 2689999998888886 3445678889999999887554444
Q ss_pred HHHHHHHHHHhhh-hcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc----cccchHHHHHHHHH
Q 001804 566 RLAACRSLCSHIE-DANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS----EVIPYANKLVQFFQ 640 (1011)
Q Consensus 566 r~~A~~aL~~~~~-~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~----ei~p~~~~L~~~L~ 640 (1011)
-..-..||...|. |++|.. ....- |...++.++-.+.++. ++.+..+.+++..- .-.|+...++|.|.
T Consensus 547 l~llmE~Ls~vv~~dpef~a-s~~sk---I~P~~i~lF~k~s~DP---~V~~~~qd~f~el~q~~~~~g~m~e~~iPsli 619 (1005)
T KOG2274|consen 547 LVLLMEALSSVVKLDPEFAA-SMESK---ICPLTINLFLKYSEDP---QVASLAQDLFEELLQIAANYGPMQERLIPSLI 619 (1005)
T ss_pred HHHHHHHHHHHhccChhhhh-hhhcc---hhHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 4444455665553 222222 12211 1222334444443222 23443333333333 25688888889888
Q ss_pred HHHhhcccc--chHHHHHHHHHHHHHHHcCCC-CcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC----
Q 001804 641 KVWEESSGE--SLLQIQLLIALRNFVVALGYQ-SHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV---- 713 (1011)
Q Consensus 641 ~lw~~~~~~--~~~~~~~l~~l~~l~~a~~~~-~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~---- 713 (1011)
+..+...+. ..+..-.++.++++++.-.+. +..+..+++|.+.+|+ ..+.++ ..+..|=|.+.+++...+.
T Consensus 620 sil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~t-lHsdD~-~tlQ~~~EcLra~Is~~~eq~~t 697 (1005)
T KOG2274|consen 620 SVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKIT-LHSDDH-ETLQNATECLRALISVTLEQLLT 697 (1005)
T ss_pred HHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhhe-eecCCh-HHHHhHHHHHHHHHhcCHHHHHh
Confidence 887765432 334444678888888876654 4567788888888888 333343 5678888899988887431
Q ss_pred --CCH--HHHhhHhHHHHHHHhchhhH--HHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhh
Q 001804 714 --MVP--QLLAYFPCLVEIMERSFDHL--QVAINIIEGYIILGGTDFLNMHASCVAKLLDLVV 770 (1011)
Q Consensus 714 --~~~--~l~~lf~~l~~~l~~~~~~l--~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l 770 (1011)
..| .+|.++..+..++.-.++.. -.+.+++...|...+.. .++.+-+++..++
T Consensus 698 ~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e----l~~n~d~IL~Avi 756 (1005)
T KOG2274|consen 698 WHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE----LGPNLDQILRAVI 756 (1005)
T ss_pred hccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH----hchhHHHHHHHHH
Confidence 222 36777777776665322211 13445555555544333 3334444444444
No 44
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.73 E-value=1.4 Score=52.87 Aligned_cols=258 Identities=14% Similarity=0.109 Sum_probs=155.3
Q ss_pred ccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHH
Q 001804 453 SQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVA 532 (1011)
Q Consensus 453 ~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~ 532 (1011)
...+.+.+.+.+.+.+. ++++..|.+|+.++..+...-.+.++-. +.+.+...+.+++| .++..|+
T Consensus 108 ~~~~~~~l~~~v~~ll~---------~~~~~VRk~A~~~l~~i~~~~p~~~~~~--~~~~l~~lL~d~~~---~V~~~a~ 173 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLS---------DPSPYVRKKAALALLKIYRKDPDLVEDE--LIPKLKQLLSDKDP---SVVSAAL 173 (526)
T ss_dssp SHHHHHHHHHHHHHHHH---------SSSHHHHHHHHHHHHHHHHHCHCCHHGG--HHHHHHHHTTHSSH---HHHHHHH
T ss_pred ccchhhHHHHHHHHHhc---------CCchHHHHHHHHHHHHHhccCHHHHHHH--HHHHHhhhccCCcc---hhHHHHH
Confidence 34566777787877775 2456889999999988876533322211 45566777788876 7899999
Q ss_pred HHHHhh-hc-cCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhh
Q 001804 533 IILGQW-VS-EIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDS 610 (1011)
Q Consensus 533 ~~lg~~-~~-~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~ 610 (1011)
-++... .. .......+.+++.+.+.+.+.+.-++....+.+..++... ...-.. ..+++.+..+++.. +
T Consensus 174 ~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~---~~~~~~--~~~i~~l~~~l~s~----~ 244 (526)
T PF01602_consen 174 SLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME---PEDADK--NRIIEPLLNLLQSS----S 244 (526)
T ss_dssp HHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS---HHHHHH--HHHHHHHHHHHHHH----H
T ss_pred HHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC---hhhhhH--HHHHHHHHHHhhcc----c
Confidence 999888 21 1111567888888888888888889998888888776532 111100 45666666666633 2
Q ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCC
Q 001804 611 KVQVLNLISILIGHVSEVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINS 690 (1011)
Q Consensus 611 ~~~l~~~l~~ii~~~~ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~ 690 (1011)
...+++++..++.-... .+....+++.|..+.. ..+.-++...++++..++..- ++.+. .....+..+. .+
T Consensus 245 ~~V~~e~~~~i~~l~~~-~~~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~~---~~~v~-~~~~~~~~l~-~~- 315 (526)
T PF01602_consen 245 PSVVYEAIRLIIKLSPS-PELLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQSN---PPAVF-NQSLILFFLL-YD- 315 (526)
T ss_dssp HHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCHC---HHHHG-THHHHHHHHH-CS-
T ss_pred cHHHHHHHHHHHHhhcc-hHHHHhhHHHHHHHhh--cccchhehhHHHHHHHhhccc---chhhh-hhhhhhheec-CC-
Confidence 34478888888843332 1245677777777776 234556777888888877664 12222 2222333333 21
Q ss_pred CCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHH-h-chhhHHHHHHHHHHHHh
Q 001804 691 PDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIME-R-SFDHLQVAINIIEGYII 748 (1011)
Q Consensus 691 ~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~-~-~~~~l~~~~~il~~yi~ 748 (1011)
+..+.--.+++++..++.. .....+++.+...+. . +.++.+.+...+...+.
T Consensus 316 -~d~~Ir~~~l~lL~~l~~~-----~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 316 -DDPSIRKKALDLLYKLANE-----SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp -SSHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred -CChhHHHHHHHHHhhcccc-----cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 2235667888888887632 233346666666663 2 33444444444444433
No 45
>PRK09687 putative lyase; Provisional
Probab=96.73 E-value=0.025 Score=61.29 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
++|..|.++..|+|.+... --.+.|++.++++++ .||..|++.+|+.... -+.+.+.++..|.
T Consensus 140 ~~~~VR~~a~~aLg~~~~~---------~ai~~L~~~L~d~~~---~VR~~A~~aLg~~~~~-----~~~~~~~L~~~L~ 202 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDE---------AAIPLLINLLKDPNG---DVRNWAAFALNSNKYD-----NPDIREAFVAMLQ 202 (280)
T ss_pred CCHHHHHHHHHHHhccCCH---------HHHHHHHHHhcCCCH---HHHHHHHHHHhcCCCC-----CHHHHHHHHHHhc
Confidence 5789999999999876532 134567888888877 7999999999998221 2356677888889
Q ss_pred CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchHHHHHHHH
Q 001804 560 DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKLVQFF 639 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~~~L~~~L 639 (1011)
|.+..||..|+.+|..+-+ +..+..|++.++.- +... ..++.+|++.. ...++.|
T Consensus 203 D~~~~VR~~A~~aLg~~~~-------------~~av~~Li~~L~~~---~~~~-------~a~~ALg~ig~--~~a~p~L 257 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKD-------------KRVLSVLIKELKKG---TVGD-------LIIEAAGELGD--KTLLPVL 257 (280)
T ss_pred CCChHHHHHHHHHHHccCC-------------hhHHHHHHHHHcCC---chHH-------HHHHHHHhcCC--HhHHHHH
Confidence 9999999999999986422 23344444444432 2121 34444554421 2566667
Q ss_pred HHHHhhccccchHHHHHHHHHH
Q 001804 640 QKVWEESSGESLLQIQLLIALR 661 (1011)
Q Consensus 640 ~~lw~~~~~~~~~~~~~l~~l~ 661 (1011)
.++.+... +..++....+++.
T Consensus 258 ~~l~~~~~-d~~v~~~a~~a~~ 278 (280)
T PRK09687 258 DTLLYKFD-DNEIITKAIDKLK 278 (280)
T ss_pred HHHHhhCC-ChhHHHHHHHHHh
Confidence 77766444 4445445555543
No 46
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.72 E-value=0.0066 Score=53.84 Aligned_cols=87 Identities=17% Similarity=0.095 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhhHhhcCCCChHHHHHHH---hhHhhhccCCCchhHHHHHHHHHHhhhccCCc---chHHHHHHHHHhh
Q 001804 484 LKDAAYGAAAYVYYELSNYLSFKDWFNGA---LSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD---DTKRAVYCALIKL 557 (1011)
Q Consensus 484 ~keA~l~alg~~a~~l~~~~~~~~~l~~~---ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~---~~~~~~~~~ll~~ 557 (1011)
.|.|++.++++++-++.+. ...++... ++..+.|+++ -||.-||-.+...+..... .++..+|.++.++
T Consensus 2 ~R~ggli~Laa~ai~l~~~--~~~~l~~Il~pVL~~~~D~d~---rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD--ISKYLDEILPPVLKCFDDQDS---RVRYYACEALYNISKVARGEILPYFNEIFDALCKL 76 (97)
T ss_pred chhHHHHHHHHHHHHchHh--HHHHHHHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999887655 33344433 4566777776 5999999999999875443 3579999999999
Q ss_pred ccCCChHHHHHHHHHHHHh
Q 001804 558 LMDKDLSVRLAACRSLCSH 576 (1011)
Q Consensus 558 L~d~~~~Vr~~A~~aL~~~ 576 (1011)
+.|+|..||-+|. -|-.+
T Consensus 77 ~~D~d~~Vr~~a~-~Ld~l 94 (97)
T PF12755_consen 77 SADPDENVRSAAE-LLDRL 94 (97)
T ss_pred HcCCchhHHHHHH-HHHHH
Confidence 9999999998774 34433
No 47
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.044 Score=62.63 Aligned_cols=233 Identities=17% Similarity=0.179 Sum_probs=144.3
Q ss_pred HHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc--ch--HHHHHHHHHhhccCCC-hHHHHHHHHHHHHhhhhcCCCcc
Q 001804 511 GALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD--DT--KRAVYCALIKLLMDKD-LSVRLAACRSLCSHIEDANFSER 585 (1011)
Q Consensus 511 ~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~--~~--~~~~~~~ll~~L~d~~-~~Vr~~A~~aL~~~~~~~~~~~~ 585 (1011)
+.++..+.+++. -||..|.|.+|..+...+. ++ ...+++.+++++..++ ....-.+..+|.++|...+ +.
T Consensus 155 p~fi~Ll~s~~~---~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~--P~ 229 (514)
T KOG0166|consen 155 PIFIQLLSSPSA---DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN--PS 229 (514)
T ss_pred HHHHHHhcCCcH---HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC--CC
Confidence 456778888887 6999999999999986321 11 2335666777776444 3566689999999998753 11
Q ss_pred ccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchH-HHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYA-NKLVQFFQKVWEESSGESLLQIQLLIALRNF 663 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~-~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l 663 (1011)
.=.--+.+++..|..++...+. +...-.+-+++-+.+--.+ +.-.. ..+++.|..+..+.+. -+..+.|++++.|
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~-~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDE-EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNI 306 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccce
Confidence 1112456778888888877632 2222233444444433333 32222 2466677777665433 3345578888886
Q ss_pred HHHcCCCCcc-hhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHH--hhHhHHHHHHHh-chhhHHHH
Q 001804 664 VVALGYQSHN-CYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLL--AYFPCLVEIMER-SFDHLQVA 739 (1011)
Q Consensus 664 ~~a~~~~~~~-~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~--~lf~~l~~~l~~-~~~~l~~~ 739 (1011)
+..-+..... +-.-++|.+..++.+...+ ..-.+|.=.++.++.+.+.--.... .++|.|+.+++. .++.=+++
T Consensus 307 vtG~d~QTq~vi~~~~L~~l~~ll~~s~~~--~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 307 VTGSDEQTQVVINSGALPVLSNLLSSSPKE--SIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA 384 (514)
T ss_pred eeccHHHHHHHHhcChHHHHHHHhccCcch--hHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence 5543321111 2245778888888642222 2556788788888776543112333 599999999987 46667788
Q ss_pred HHHHHHHHhcchhh
Q 001804 740 INIIEGYIILGGTD 753 (1011)
Q Consensus 740 ~~il~~yi~lg~~~ 753 (1011)
.-.|.|...-|...
T Consensus 385 awaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 385 AWAISNLTSSGTPE 398 (514)
T ss_pred HHHHHhhcccCCHH
Confidence 88888888877644
No 48
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.66 E-value=0.11 Score=63.89 Aligned_cols=243 Identities=13% Similarity=0.109 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc---CCc---chH-HHHHHHHH
Q 001804 483 LLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE---IKD---DTK-RAVYCALI 555 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~---~~~---~~~-~~~~~~ll 555 (1011)
..|-+|+..+..++..+.+..-.+. +.|+++..+.|+.+ .||..|.-++.+.-.- +++ ..+ +-+++.+-
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDR-VlPY~v~l~~Ds~a---~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDR-VLPYFVHLLMDSEA---DVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhh-hHHHHHHHhcCchH---HHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 3477888888888877665544443 55788889999888 7999999999988762 333 234 44789999
Q ss_pred hhccC-CChHHHHHHHHHHHHhhhhc----------------CCCcc------ccccchHHHHHHHH----HHHhHhhhh
Q 001804 556 KLLMD-KDLSVRLAACRSLCSHIEDA----------------NFSER------DFTDLLPICWDSCF----KLVEEVQEF 608 (1011)
Q Consensus 556 ~~L~d-~~~~Vr~~A~~aL~~~~~~~----------------~~~~~------~l~p~l~~il~~L~----~ll~~~~~~ 608 (1011)
+++.| ....||++=|++|..+.+.. ++..+ ...-++..+.+..- .|+..-+ .
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~-~ 592 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP-P 592 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc-h
Confidence 99988 67789988777777654321 00000 11122222222221 2222211 2
Q ss_pred hhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCC
Q 001804 609 DSKVQVLNLISILIGHVSEVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDI 688 (1011)
Q Consensus 609 e~~~~l~~~l~~ii~~~~ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~ 688 (1011)
-.|+.+++.|.-++--||+.+- -+-|+.+|+-..+ +.++.+|++.++.+..+..-+|.. ...++++|++++.+..
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk~ks-ND~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGKEKS-NDVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhhccc-ccchHHHHHHHhc--CccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccC
Confidence 3455566666666666662110 1234455555443 237899999999999988888874 4778999999999974
Q ss_pred CCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHhchhhHHH
Q 001804 689 NSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMERSFDHLQV 738 (1011)
Q Consensus 689 ~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~~~~~l~~ 738 (1011)
.....++.+|.-++.+++..--=-+.+.++....++.+-....++|.
T Consensus 668 ---~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~ 714 (1431)
T KOG1240|consen 668 ---GEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRR 714 (1431)
T ss_pred ---cchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHH
Confidence 22357889999999998863211245556666666666655555543
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.57 E-value=0.74 Score=52.79 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=106.3
Q ss_pred ccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcC-CCChHHHHHHHhhH
Q 001804 437 LRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSN-YLSFKDWFNGALSL 515 (1011)
Q Consensus 437 ~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~-~~~~~~~l~~~ll~ 515 (1011)
+|......+-..+.+++ ++.++++++..-. +-.+|..|..++..+..++.-+.- .++.-.-+...+-.
T Consensus 297 VRnvt~ra~~vva~alg---v~~llpfl~a~c~--------SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~ 365 (975)
T COG5181 297 VRNVTGRAVGVVADALG---VEELLPFLEALCG--------SRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISK 365 (975)
T ss_pred HHHHHHHHHHHHHHhhC---cHHHHHHHHHHhc--------CccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHH
Confidence 44445555556666776 2334444444332 235799999999999988865431 11221113333445
Q ss_pred hhhccCCCchhHHHHHHHHHHhhhccCCc---chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCC-----cccc
Q 001804 516 DLSNDHPNMHIIHRKVAIILGQWVSEIKD---DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFS-----ERDF 587 (1011)
Q Consensus 516 ~l~~~~~~~~~lR~ra~~~lg~~~~~~~~---~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~-----~~~l 587 (1011)
.+.|.+- ++|--++..++..++...| +.+..++..+-.-. +-+....|.+|+...+|- ++..
T Consensus 366 ~l~D~~~---~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~-------~~hrgk~l~sfLkA~g~iiplm~peYa 435 (975)
T COG5181 366 LLKDRSR---FVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGA-------SQHRGKELVSFLKAMGFIIPLMSPEYA 435 (975)
T ss_pred Hhhccce---eeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHH-------HhcCCchHHHHHHHhccccccCChHhh
Confidence 6667655 7999999999998885432 33333333332222 222233445555544332 3333
Q ss_pred ccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccc--hHHHHHHHHH-HHHhh
Q 001804 588 TDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIP--YANKLVQFFQ-KVWEE 645 (1011)
Q Consensus 588 ~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p--~~~~L~~~L~-~lw~~ 645 (1011)
--|-..+++-++..++..++ +.+- .+-.+..++++++.++| +-+++.+.+. ..|..
T Consensus 436 ~h~tre~m~iv~ref~spde-emkk-~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~r 494 (975)
T COG5181 436 CHDTREHMEIVFREFKSPDE-EMKK-DLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRR 494 (975)
T ss_pred hhhHHHHHHHHHHHhCCchh-hcch-hHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHh
Confidence 33556788888888887643 3233 34455566677776777 4678877664 48875
No 50
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.52 Score=53.61 Aligned_cols=265 Identities=13% Similarity=0.130 Sum_probs=157.0
Q ss_pred HHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc--CCcch--HHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCc
Q 001804 509 FNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE--IKDDT--KRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSE 584 (1011)
Q Consensus 509 l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~--~~~~~--~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~ 584 (1011)
+-+-|+..|.|+++ =+|.-+=-++|.|-.. -+|+. ...+.+.++..++.++.-+|..|..=+..|+.-. +
T Consensus 209 ~ldGLf~~LsD~s~---eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~---g 282 (675)
T KOG0212|consen 209 LLDGLFNMLSDSSD---EVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP---G 282 (675)
T ss_pred HHHHHHHHhcCCcH---HHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCC---C
Confidence 33445667778777 5888777889999763 23433 6778888899999899999999988788887754 7
Q ss_pred cccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c-cc-ch-HHHHHHHHHHHHhhccccchHHHHHHHHH
Q 001804 585 RDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E-VI-PY-ANKLVQFFQKVWEESSGESLLQIQLLIAL 660 (1011)
Q Consensus 585 ~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e-i~-p~-~~~L~~~L~~lw~~~~~~~~~~~~~l~~l 660 (1011)
..+.||+..|+..++.++.+.++..++..-..+-+.+...++ + .. .. ...++..|.+.... |..-.|..+|+-+
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~--~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD--DREETRIAVLNWI 360 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc--chHHHHHHHHHHH
Confidence 899999999999999999887544333322222223444444 2 21 11 23566666655443 2233566688888
Q ss_pred HHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHhchhhHHHHH
Q 001804 661 RNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMERSFDHLQVAI 740 (1011)
Q Consensus 661 ~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~~~~~l~~~~ 740 (1011)
..+-...++.--....-+.+.+-..+.. ...+...-+|+++..+.....+ +.+..+...++..+....-.++.
T Consensus 361 ~~l~~~~p~ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~lla~i~~s~~~--~~~~~fl~sLL~~f~e~~~~l~~-- 433 (675)
T KOG0212|consen 361 ILLYHKAPGQLLVHNDSIFLTLLKTLSD---RSDEVVLLALSLLASICSSSNS--PNLRKFLLSLLEMFKEDTKLLEV-- 433 (675)
T ss_pred HHHHhhCcchhhhhccHHHHHHHHhhcC---chhHHHHHHHHHHHHHhcCccc--ccHHHHHHHHHHHHhhhhHHHHh--
Confidence 8888877764222334455555555543 3345778889999888765443 34444444444444432222221
Q ss_pred HHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCccchhHhh-HHHHHHHHHHhC
Q 001804 741 NIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLI-ILPVIDMLIQCF 792 (1011)
Q Consensus 741 ~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~-~~~l~e~ll~~~ 792 (1011)
=-++|..--+-.+ .+++++..+..++..-++-.+.. +.+++..++...
T Consensus 434 --Rg~lIIRqlC~lL--~aE~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTS 482 (675)
T KOG0212|consen 434 --RGNLIIRQLCLLL--NAERIYRSIADILEREENLKFASTMVQALNTILLTS 482 (675)
T ss_pred --hhhHHHHHHHHHh--CHHHHHHHHHHHHhccccchHHHHHHHHHHhhhccc
Confidence 0133333222222 35677777777776532222222 234445544443
No 51
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.49 E-value=0.19 Score=66.94 Aligned_cols=330 Identities=10% Similarity=-0.003 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHhhhHh---hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchH-----HHHHHHH
Q 001804 483 LLKDAAYGAAAYVYYE---LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTK-----RAVYCAL 554 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~---l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~-----~~~~~~l 554 (1011)
-.++.+..++..++.+ ....+ .+.-..+.|+..|.++++ -+|..++|++|..+..- ++.+ ...++.+
T Consensus 419 evQ~~Av~aL~~L~~~~~e~~~aI-i~~ggIp~LV~LL~s~s~---~iQ~~A~~~L~nLa~~n-denr~aIieaGaIP~L 493 (2102)
T PLN03200 419 DVQEELIRALSSLCCGKGGLWEAL-GGREGVQLLISLLGLSSE---QQQEYAVALLAILTDEV-DESKWAITAAGGIPPL 493 (2102)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHH-HHcCcHHHHHHHHcCCCH---HHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHH
Confidence 4455566666555533 10000 001123566777777665 68999999999987632 1222 3357888
Q ss_pred HhhccCCChHHHHHHHHHHHHhhhhcCCCccccccch--HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchH
Q 001804 555 IKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLL--PICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYA 632 (1011)
Q Consensus 555 l~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~ 632 (1011)
+++|.+++..+|..|+.||.++.-+ .+..+..+ ...+..|+.+++.. ..+.+.....+|..++..-..
T Consensus 494 V~LL~s~~~~iqeeAawAL~NLa~~----~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~----- 563 (2102)
T PLN03200 494 VQLLETGSQKAKEDSATVLWNLCCH----SEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADA----- 563 (2102)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCC----cHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccch-----
Confidence 8889888999999999999999764 22333333 13556667777654 335566677888888764331
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcc----hhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHH
Q 001804 633 NKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHN----CYSMLLPILRRGIDINSPDELNLLEDSMLLWEATI 708 (1011)
Q Consensus 633 ~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~----~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~ 708 (1011)
..++.|..++.. ++...+..+++++..++......... -..-.+|.+...++.++ ....++|...+..+.
T Consensus 564 -~~I~~Lv~LLls--dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs---~~ikk~Aa~iLsnL~ 637 (2102)
T PLN03200 564 -ATISQLTALLLG--DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK---EETQEKAASVLADIF 637 (2102)
T ss_pred -hHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC---HHHHHHHHHHHHHHh
Confidence 111334444433 23344555788888877755442100 01235677777776532 356788988888888
Q ss_pred hcCCCCCHHHH--hhHhHHHHHHHh-chhhHHHHHHHHHHHHhcchhhh-hhhhHHHHHHHHHHhhcCccchhHhhHHHH
Q 001804 709 SHAPVMVPQLL--AYFPCLVEIMER-SFDHLQVAINIIEGYIILGGTDF-LNMHASCVAKLLDLVVGNVNDKGLLIILPV 784 (1011)
Q Consensus 709 ~~~~~~~~~l~--~lf~~l~~~l~~-~~~~l~~~~~il~~yi~lg~~~~-l~~~~~~l~~~~~~~l~~~~~~~~~~~~~l 784 (1011)
.+.+.....+. ..+|.++..+.. +++--++....|.+...-+.+.- ..-........+..++..-+.+-...+...
T Consensus 638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 76554433333 478888888876 45666677777766554333221 100011122223333332222222233444
Q ss_pred HHHHHHhCCCCchhHH-HHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhCh
Q 001804 785 IDMLIQCFPIQVPPLI-SCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNA 841 (1011)
Q Consensus 785 ~e~ll~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~ 841 (1011)
+..++...+ ....+. ...+..++..+-+|. ...+.+...++.++.-.+|
T Consensus 718 LanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~-------~~~k~~Aa~AL~~L~~~~~ 767 (2102)
T PLN03200 718 LANLLSDPE-VAAEALAEDIILPLTRVLREGT-------LEGKRNAARALAQLLKHFP 767 (2102)
T ss_pred HHHHHcCch-HHHHHHhcCcHHHHHHHHHhCC-------hHHHHHHHHHHHHHHhCCC
Confidence 555554432 122222 223444554443332 1356777777777776555
No 52
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=3.1 Score=49.19 Aligned_cols=287 Identities=12% Similarity=0.092 Sum_probs=154.1
Q ss_pred HHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc--CCc---chHHHHHHHHHhhccCCC
Q 001804 488 AYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE--IKD---DTKRAVYCALIKLLMDKD 562 (1011)
Q Consensus 488 ~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~--~~~---~~~~~~~~~ll~~L~d~~ 562 (1011)
+...+....+.+.+..-..+.++ .....+++.+ . -|+-.|+..+.-|... +.+ ++.+..++-++.+=++-+
T Consensus 480 ace~is~~eeDfkd~~ill~aye-~t~ncl~nn~--l-pv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~fe 555 (970)
T COG5656 480 ACEFISTIEEDFKDNGILLEAYE-NTHNCLKNNH--L-PVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFE 555 (970)
T ss_pred HHHHHHHHHHhcccchHHHHHHH-HHHHHHhcCC--c-chhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccccc
Confidence 34445555555554322211122 2345666643 2 3888999999988763 333 334556666655444333
Q ss_pred hHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHH----HHhHhhh---------hhhHHH---HHHHHHHHHHhhc
Q 001804 563 LSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFK----LVEEVQE---------FDSKVQ---VLNLISILIGHVS 626 (1011)
Q Consensus 563 ~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~----ll~~~~~---------~e~~~~---l~~~l~~ii~~~~ 626 (1011)
.-+= ...+..|++.+ .+++.||.+.++..|.+ +.++.-+ +|-.+. ++.++.+++-++.
T Consensus 556 iD~L---S~vMe~fVe~f---seELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSle 629 (970)
T COG5656 556 IDPL---SMVMESFVEYF---SEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLE 629 (970)
T ss_pred chHH---HHHHHHHHHHh---HHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcc
Confidence 2211 13566778776 57999999988877765 5443211 122333 4667777776666
Q ss_pred c---ccchHHH-HHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCC-CCCCcchhhhhHH
Q 001804 627 E---VIPYANK-LVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDI-NSPDELNLLEDSM 701 (1011)
Q Consensus 627 e---i~p~~~~-L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~-~~~~~~~l~e~~l 701 (1011)
. +-.|... +.|...=+..+. ..-+-..+++.+-...-+... ++|.+.|+++...+. .++...++.++.-
T Consensus 630 n~p~vLk~le~slypvi~Filkn~--i~dfy~Ea~dildg~tf~ske----I~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 630 NRPLVLKYLEVSLYPVISFILKNE--ISDFYQEALDILDGYTFMSKE----IEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhhhHHHHH----hhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 2 2233322 222211122211 111222233433333333322 446666666655542 1223258889999
Q ss_pred HHHHHHHhcCCC--CC-HHHHh-hHhHHHHHHHh---chhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCcc
Q 001804 702 LLWEATISHAPV--MV-PQLLA-YFPCLVEIMER---SFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVN 774 (1011)
Q Consensus 702 ~L~~~l~~~~~~--~~-~~l~~-lf~~l~~~l~~---~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~ 774 (1011)
+.++.++-+.+. .+ +...+ ++..+-.|+.. ..+.+.-++++++.+++-=...+++.+.+-+.++.+..+...+
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi~vags~l~~~d 783 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFISVAGSGLKMID 783 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHHHHHhhhhhccc
Confidence 999988877643 22 22333 45555555543 3477888999999988875666776677766677775554444
Q ss_pred chhHhhHHHHHHHHHHh
Q 001804 775 DKGLLIILPVIDMLIQC 791 (1011)
Q Consensus 775 ~~~~~~~~~l~e~ll~~ 791 (1011)
+.+...++ +++.++-+
T Consensus 784 Elg~~sv~-aleliinn 799 (970)
T COG5656 784 ELGPASVY-ALELIINN 799 (970)
T ss_pred cccchhhh-HHHHHHHH
Confidence 55533333 34555444
No 53
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.32 E-value=0.029 Score=48.92 Aligned_cols=76 Identities=32% Similarity=0.256 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
++|..|..++.++|..... -..+.|...++++++ .+|+.|++.+|++. -+...+.+..++.
T Consensus 12 ~~~~vr~~a~~~L~~~~~~---------~~~~~L~~~l~d~~~---~vr~~a~~aL~~i~-------~~~~~~~L~~~l~ 72 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDP---------EAIPALIELLKDEDP---MVRRAAARALGRIG-------DPEAIPALIKLLQ 72 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHH---------HHHHHHHHHHTSSSH---HHHHHHHHHHHCCH-------HHHTHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCH---------hHHHHHHHHHcCCCH---HHHHHHHHHHHHhC-------CHHHHHHHHHHHc
Confidence 6789999999999954422 256677788888776 79999999999984 3456777778786
Q ss_pred -CCChHHHHHHHHHHH
Q 001804 560 -DKDLSVRLAACRSLC 574 (1011)
Q Consensus 560 -d~~~~Vr~~A~~aL~ 574 (1011)
|++..||.+|+.||.
T Consensus 73 ~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 73 DDDDEVVREAAAEALG 88 (88)
T ss_dssp C-SSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhcC
Confidence 467889999999874
No 54
>PTZ00429 beta-adaptin; Provisional
Probab=96.20 E-value=5 Score=49.54 Aligned_cols=352 Identities=11% Similarity=0.074 Sum_probs=189.3
Q ss_pred ccccHHHHHHHHHHHcccchH-HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhH
Q 001804 437 LRPCAEALYIVLFENHSQLLG-PVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSL 515 (1011)
Q Consensus 437 ~r~~a~~~l~~l~~~~~~~l~-~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~ 515 (1011)
+|++|+-.+..+....++.+. .-+.+.+.+.+. + .+....-+|+.++-.+...-.+.++...-....++.
T Consensus 156 VRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~-------D--~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~ 226 (746)
T PTZ00429 156 VRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN-------D--NNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVY 226 (746)
T ss_pred HHHHHHHHHHHHHhhCcccccccchHHHHHHHhc-------C--CCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 677777766667666665432 113344555553 1 234556667776666654321212211111122333
Q ss_pred hhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHH
Q 001804 516 DLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICW 595 (1011)
Q Consensus 516 ~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il 595 (1011)
.+.+-++ +.+-.+.-++.+|...- .+....+++.+...|++.+..|.++|++++-.+.... ..+.+...+..+-
T Consensus 227 ~L~e~~E---W~Qi~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~--~~~~~~~~~~rl~ 300 (746)
T PTZ00429 227 HLPECNE---WGQLYILELLAAQRPSD-KESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRC--SQELIERCTVRVN 300 (746)
T ss_pred HhhcCCh---HHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC--CHHHHHHHHHHHH
Confidence 4433334 77878888887775432 2335678888889898888999999999988776532 1222222222333
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcch
Q 001804 596 DSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNC 674 (1011)
Q Consensus 596 ~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~ 674 (1011)
..|+.|.+ ...+.+..++..|..++.+..+ +.++. ....-...|...++..-|++|..++.. ...
T Consensus 301 ~pLv~L~s--s~~eiqyvaLr~I~~i~~~~P~lf~~~~-------~~Ff~~~~Dp~yIK~~KLeIL~~Lane-----~Nv 366 (746)
T PTZ00429 301 TALLTLSR--RDAETQYIVCKNIHALLVIFPNLLRTNL-------DSFYVRYSDPPFVKLEKLRLLLKLVTP-----SVA 366 (746)
T ss_pred HHHHHhhC--CCccHHHHHHHHHHHHHHHCHHHHHHHH-------HhhhcccCCcHHHHHHHHHHHHHHcCc-----ccH
Confidence 44455543 2357788888888888876653 33332 222233445556787778888776543 234
Q ss_pred hhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHhchhhHHHHHHHHHHHHhcchhhh
Q 001804 675 YSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMERSFDHLQVAINIIEGYIILGGTDF 754 (1011)
Q Consensus 675 ~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~~~~~l~~~~~il~~yi~lg~~~~ 754 (1011)
..++--+.+++.+. ..+|...++.-+..+....+ ...-.....|+..+..+.+++.+++..+...+-.-|..+
T Consensus 367 ~~IL~EL~eYa~d~----D~ef~r~aIrAIg~lA~k~~---~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~~ 439 (746)
T PTZ00429 367 PEILKELAEYASGV----DMVFVVEVVRAIASLAIKVD---SVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPELL 439 (746)
T ss_pred HHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccHH
Confidence 44555555565542 23566777777776654433 334456666666676666677676666665544444321
Q ss_pred hhhhHHHHHHHHHHh-hcCccchhH--hhHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q 001804 755 LNMHASCVAKLLDLV-VGNVNDKGL--LIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAA 831 (1011)
Q Consensus 755 l~~~~~~l~~~~~~~-l~~~~~~~~--~~~~~l~e~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1011)
.+..++... .+.+.+... ..+|=++|..-.. + ..+. ++.+++.... ++. ..++-.++.
T Consensus 440 ------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I-~-~a~~----~L~~~i~~f~----~E~---~~VqlqlLt 500 (746)
T PTZ00429 440 ------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI-E-NGKD----IIQRFIDTIM----EHE---QRVQLAILS 500 (746)
T ss_pred ------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-h-hHHH----HHHHHHhhhc----cCC---HHHHHHHHH
Confidence 111222211 123333222 2245555542111 1 1122 3333333221 122 357778889
Q ss_pred HHHHHHHhChHH
Q 001804 832 ILARILVMNANY 843 (1011)
Q Consensus 832 vl~rl~~~~~~~ 843 (1011)
..+++.+.+|..
T Consensus 501 a~vKlfl~~p~~ 512 (746)
T PTZ00429 501 AAVKMFLRDPQG 512 (746)
T ss_pred HHHHHHhcCcHH
Confidence 999999988864
No 55
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.11 E-value=0.017 Score=53.55 Aligned_cols=95 Identities=13% Similarity=-0.007 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHhhhHhhcCCCC--hHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc--c-hH-HHHHHHH
Q 001804 481 GLLLKDAAYGAAAYVYYELSNYLS--FKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD--D-TK-RAVYCAL 554 (1011)
Q Consensus 481 ~~~~keA~l~alg~~a~~l~~~~~--~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~--~-~~-~~~~~~l 554 (1011)
+|..|+.++.+++.++..-.+... .+.-..+.+++.++++++ -+|..++|++++++...++ . .. ..+.+.+
T Consensus 20 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~---~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l 96 (120)
T cd00020 20 DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE---EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL 96 (120)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCH---HHHHHHHHHHHHHccCcHHHHHHHHHCCChHHH
Confidence 488999999999998854111000 011133456667777655 6999999999999885322 1 11 2368888
Q ss_pred HhhccCCChHHHHHHHHHHHHhhh
Q 001804 555 IKLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 555 l~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
+++|.+.+..||..|+.+|.++++
T Consensus 97 ~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 97 VNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999998763
No 56
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=4.7 Score=47.61 Aligned_cols=198 Identities=17% Similarity=0.244 Sum_probs=118.8
Q ss_pred HHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccc
Q 001804 509 FNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFT 588 (1011)
Q Consensus 509 l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~ 588 (1011)
+.+-++..|++..| ++|-||.-++-+..-+. |+...+.|+-+...|.|+|+-|+-+|...++.+.... +..+.
T Consensus 145 La~Dv~tLL~sskp---YvRKkAIl~lykvFLkY-PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn---PknyL 217 (877)
T KOG1059|consen 145 LADDVFTLLNSSKP---YVRKKAILLLYKVFLKY-PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN---PQNYL 217 (877)
T ss_pred HHHHHHHHHhcCch---HHHHHHHHHHHHHHHhh-hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC---Ccccc
Confidence 55556778888888 99999999987766544 4667788999999999999999999999999988653 33333
Q ss_pred cchHHHHH----------------------------------HHHHHHhHhhhhhhHHHHHHHHHHHHHh-hcc-ccchH
Q 001804 589 DLLPICWD----------------------------------SCFKLVEEVQEFDSKVQVLNLISILIGH-VSE-VIPYA 632 (1011)
Q Consensus 589 p~l~~il~----------------------------------~L~~ll~~~~~~e~~~~l~~~l~~ii~~-~~e-i~p~~ 632 (1011)
|..|..+. -+..++..+ -.+-.+|+|+.++|.. +.. .-.+.
T Consensus 218 ~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT---~AmSLlYECvNTVVa~s~s~g~~d~~ 294 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMEST---VAMSLLYECVNTVVAVSMSSGMSDHS 294 (877)
T ss_pred cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhh---HHHHHHHHHHHHheeehhccCCCCcH
Confidence 33333222 222233222 3455688999998865 111 21232
Q ss_pred HHH---HHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHh
Q 001804 633 NKL---VQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATIS 709 (1011)
Q Consensus 633 ~~L---~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~ 709 (1011)
..+ ++.|.-+.+. .| +-++---|-+|+.++. ..+.....---+|-+|++..++. .--.||||+.+++.
T Consensus 295 asiqLCvqKLr~fied-sD-qNLKYlgLlam~KI~k----tHp~~Vqa~kdlIlrcL~DkD~S---IRlrALdLl~gmVs 365 (877)
T KOG1059|consen 295 ASIQLCVQKLRIFIED-SD-QNLKYLGLLAMSKILK----THPKAVQAHKDLILRCLDDKDES---IRLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHhhhhhc-CC-ccHHHHHHHHHHHHhh----hCHHHHHHhHHHHHHHhccCCch---hHHHHHHHHHHHhh
Confidence 222 2333334332 23 3333222334554433 22334455567788899754433 44689999999874
Q ss_pred cCCCCCHHHHhhHhHHHHHHH
Q 001804 710 HAPVMVPQLLAYFPCLVEIME 730 (1011)
Q Consensus 710 ~~~~~~~~l~~lf~~l~~~l~ 730 (1011)
- ..+..+...|+.-+.
T Consensus 366 k-----kNl~eIVk~LM~~~~ 381 (877)
T KOG1059|consen 366 K-----KNLMEIVKTLMKHVE 381 (877)
T ss_pred h-----hhHHHHHHHHHHHHH
Confidence 3 234444444444443
No 57
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.93 E-value=0.033 Score=48.55 Aligned_cols=72 Identities=32% Similarity=0.332 Sum_probs=53.0
Q ss_pred HHhhHhh-hccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcccccc
Q 001804 511 GALSLDL-SNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTD 589 (1011)
Q Consensus 511 ~~ll~~l-~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p 589 (1011)
+.|+..+ +++++ .+|..+++++|++. .+.+.+.+..++.|++..||.+|+.||..+=+
T Consensus 2 ~~L~~~l~~~~~~---~vr~~a~~~L~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------- 60 (88)
T PF13646_consen 2 PALLQLLQNDPDP---QVRAEAARALGELG-------DPEAIPALIELLKDEDPMVRRAAARALGRIGD----------- 60 (88)
T ss_dssp HHHHHHHHTSSSH---HHHHHHHHHHHCCT-------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-----------
T ss_pred HHHHHHHhcCCCH---HHHHHHHHHHHHcC-------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------
Confidence 3456666 55555 89999999999663 33667888888899999999999999997521
Q ss_pred chHHHHHHHHHHHhHh
Q 001804 590 LLPICWDSCFKLVEEV 605 (1011)
Q Consensus 590 ~l~~il~~L~~ll~~~ 605 (1011)
+..++.|.+++++-
T Consensus 61 --~~~~~~L~~~l~~~ 74 (88)
T PF13646_consen 61 --PEAIPALIKLLQDD 74 (88)
T ss_dssp --HHTHHHHHHHHTC-
T ss_pred --HHHHHHHHHHHcCC
Confidence 34566666666654
No 58
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=5 Score=47.88 Aligned_cols=86 Identities=15% Similarity=0.197 Sum_probs=62.7
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhh----HhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHH
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS----LDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALI 555 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll----~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll 555 (1011)
++-..|-.|++++..+--.+ +.+.++ ....|+.| +||.-|+..|-+.-+ +.++...++.+.+-
T Consensus 120 pN~LiRasALRvlSsIRvp~---------IaPI~llAIk~~~~D~s~---yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSIRVPM---------IAPIMLLAIKKAVTDPSP---YVRKTAAHAIPKLYS-LDPEQKDQLEEVIK 186 (968)
T ss_pred CcHHHHHHHHHHHHhcchhh---------HHHHHHHHHHHHhcCCcH---HHHHHHHHhhHHHhc-CChhhHHHHHHHHH
Confidence 45688999999888654221 334433 23456666 899999999877655 45566668888888
Q ss_pred hhccCCChHHHHHHHHHHHHhhh
Q 001804 556 KLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 556 ~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
.+|.|.+.-|--+|+.|+...|-
T Consensus 187 ~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhch
Confidence 88899998888899999888763
No 59
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.84 E-value=0.007 Score=47.61 Aligned_cols=53 Identities=19% Similarity=0.062 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHhhhHhhcCC-CChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHh
Q 001804 482 LLLKDAAYGAAAYVYYELSNY-LSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQ 537 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~l~~~-~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~ 537 (1011)
|..|++++.++|.++....+. .++.+-+.+.|++.++|+++ -||..|||++|+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~---~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDD---SVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSH---HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHhc
Confidence 789999999999877442211 12333455667778888766 689999999997
No 60
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=95.73 E-value=0.17 Score=50.09 Aligned_cols=127 Identities=18% Similarity=0.151 Sum_probs=93.0
Q ss_pred HHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcch----HHHHHHHHHhhccC-CChHHHHHHHHHHHHhhhhc----
Q 001804 510 NGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDT----KRAVYCALIKLLMD-KDLSVRLAACRSLCSHIEDA---- 580 (1011)
Q Consensus 510 ~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~----~~~~~~~ll~~L~d-~~~~Vr~~A~~aL~~~~~~~---- 580 (1011)
...+...++++++ .-|-.++-+++-.++..+.+. ...-++.+++.|+. .+..+...|+.++..+++..
T Consensus 27 ~~ri~~LL~s~~~---~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 27 VTRINSLLQSKSA---YSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHhCCCCh---hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445667777666 456677777777777654443 35667788888874 45678899999999987643
Q ss_pred CCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHH
Q 001804 581 NFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKV 642 (1011)
Q Consensus 581 ~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~l 642 (1011)
++..+...|.++.+++.++++++.. .....+++++..++.++.. +.||..++-..+..+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~~---~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQDS---SCPETALDALATLLPHHPTTFRPFANKIESALLSL 163 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHH
Confidence 3345678899999999999999841 2233489999999999994 999999887665543
No 61
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.63 E-value=0.24 Score=49.81 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCC
Q 001804 483 LLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKD 562 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~ 562 (1011)
..|--++.++|-++..-.+.++ + ..+.+...|+|++| .||+.|+-++.+....---...+.++..++.++.|+|
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve--~-~~~~l~~~L~D~~~---~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVE--P-YLPNLYKCLRDEDP---LVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHH--h-HHHHHHHHHCCCCH---HHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 4566778888866654322222 2 44567788999988 8999999999998763112345667677778889999
Q ss_pred hHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHH
Q 001804 563 LSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFK 600 (1011)
Q Consensus 563 ~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ 600 (1011)
..||..|...+..+.... .++.+..++++++..|-.
T Consensus 77 ~~Ir~~A~~~~~e~~~~~--~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKR--NPNIIYNNFPELISSLNN 112 (178)
T ss_pred HHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHhC
Confidence 999999999999887653 245566666666555443
No 62
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=1.4 Score=50.70 Aligned_cols=313 Identities=17% Similarity=0.181 Sum_probs=165.5
Q ss_pred HHhhHhhh-ccCCCchhHHHHHHHHHHhhhccCCcch----HHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcc
Q 001804 511 GALSLDLS-NDHPNMHIIHRKVAIILGQWVSEIKDDT----KRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSER 585 (1011)
Q Consensus 511 ~~ll~~l~-~~~~~~~~lR~ra~~~lg~~~~~~~~~~----~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~ 585 (1011)
+.++..+. +.+| -++.-|+|++-..++.-++.+ -....+.+++++.+++..|+..|+.||.+++.+. .
T Consensus 112 ~~lV~~l~~~~~~---~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds----~ 184 (514)
T KOG0166|consen 112 PRLVEFLSRDDNP---TLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDS----P 184 (514)
T ss_pred HHHHHHHccCCCh---hHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCC----h
Confidence 33444554 3344 689999999999988533222 1234666899999999999999999999998763 1
Q ss_pred ccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVV 665 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~ 665 (1011)
.++-| +++ + .++++|..+.+......++| .+.=+++.++.
T Consensus 185 ~~Rd~-----------------------vl~--------~--------g~l~pLl~~l~~~~~~~~lR-n~tW~LsNlcr 224 (514)
T KOG0166|consen 185 DCRDY-----------------------VLS--------C--------GALDPLLRLLNKSDKLSMLR-NATWTLSNLCR 224 (514)
T ss_pred HHHHH-----------------------HHh--------h--------cchHHHHHHhccccchHHHH-HHHHHHHHHHc
Confidence 22111 110 1 11222222222211112333 34556677666
Q ss_pred HcCCCCc-chhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHH--hhHhHHHHHHHhchhhHH-HHHH
Q 001804 666 ALGYQSH-NCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLL--AYFPCLVEIMERSFDHLQ-VAIN 741 (1011)
Q Consensus 666 a~~~~~~-~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~--~lf~~l~~~l~~~~~~l~-~~~~ 741 (1011)
.-.+.|+ .-..-++|++...+...++ +.+.|++=.+++++-+.......+. ...|.|+.++......+. -+++
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~D~---~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR 301 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHSTDE---EVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR 301 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence 5544332 2235688888888875333 5668888888888766554333333 488999999987554433 2333
Q ss_pred HHHHHHhcchhhhhhh-hHHHHHHHHHHhhcCccchh--HhhHHHHHHHHHHhCCCCchhHHHH-HHHHHHHHHhcCCCC
Q 001804 742 IIEGYIILGGTDFLNM-HASCVAKLLDLVVGNVNDKG--LLIILPVIDMLIQCFPIQVPPLISC-SLQKLIVICLSGGDD 817 (1011)
Q Consensus 742 il~~yi~lg~~~~l~~-~~~~l~~~~~~~l~~~~~~~--~~~~~~l~e~ll~~~~~~~~~~~~~-~l~~l~~~~~~~~~~ 817 (1011)
.+=| |.-|.+..-+. ........+..++.+...+. -.++|-+..+ ..-.+.++..++.. +++.++..+.++.
T Consensus 302 aiGN-IvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI-tAG~~~qiqaVida~l~p~Li~~l~~~e-- 377 (514)
T KOG0166|consen 302 AIGN-IVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNI-TAGNQEQIQAVIDANLIPVLINLLQTAE-- 377 (514)
T ss_pred hccc-eeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh-hcCCHHHHHHHHHcccHHHHHHHHhccc--
Confidence 3323 55566554332 12334445555554322222 1123433333 22222334445544 5566666553331
Q ss_pred CCchhHHHHHHHHHHHHHHHHhChHHHHHHhccchhhHHHhhcCCcchHHHHHHHHHHHHHcCCCCCch-hhHHHHHHHH
Q 001804 818 HEPSKTAVKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALS 896 (1011)
Q Consensus 818 ~~~~~~~~~~~~~~vl~rl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~ 896 (1011)
. ..+..++-+++.+.......-..+| -+.| ++...|+.+ ...+. -.+.+.-||.
T Consensus 378 -f----~~rKEAawaIsN~ts~g~~~qi~yL---------v~~g----------iI~plcdlL-~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 378 -F----DIRKEAAWAISNLTSSGTPEQIKYL---------VEQG----------IIKPLCDLL-TCPDVKIILVALDGLE 432 (514)
T ss_pred -h----HHHHHHHHHHHhhcccCCHHHHHHH---------HHcC----------Cchhhhhcc-cCCChHHHHHHHHHHH
Confidence 1 1334445556665543322222221 1122 455666655 33444 4566677777
Q ss_pred HHhccC
Q 001804 897 IILTMR 902 (1011)
Q Consensus 897 ~Ll~~~ 902 (1011)
.++..+
T Consensus 433 nil~~~ 438 (514)
T KOG0166|consen 433 NILKVG 438 (514)
T ss_pred HHHHHH
Confidence 777763
No 63
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.52 E-value=0.23 Score=57.10 Aligned_cols=157 Identities=16% Similarity=0.208 Sum_probs=88.5
Q ss_pred ccchHHHHHHHHHHHHhhc---cccchHHHHHHHHHHHHHHHcCCCCc----chhhhHHHHHHhhcCCCCCCcchhhhhH
Q 001804 628 VIPYANKLVQFFQKVWEES---SGESLLQIQLLIALRNFVVALGYQSH----NCYSMLLPILRRGIDINSPDELNLLEDS 700 (1011)
Q Consensus 628 i~p~~~~L~~~L~~lw~~~---~~~~~~~~~~l~~l~~l~~a~~~~~~----~~~~~~~Pvi~~~l~~~~~~~~~l~e~~ 700 (1011)
+.|++..|+..|..+.+.. +++.++ .|+-.++.-+++.-. .+.+.+..++..+.++ |.-..|--..
T Consensus 20 i~p~~~~ll~~Lf~~i~~~~s~ENeylM-----k~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kN--PsnP~FnHyl 92 (435)
T PF03378_consen 20 IQPFAQQLLQNLFALIEKPGSAENEYLM-----KCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKN--PSNPRFNHYL 92 (435)
T ss_dssp TTCCHHHHHHHHHHHHHTT-STC-HHHH-----HHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-----HHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhcCCCccchHHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC--CCCcchhhhH
Confidence 8899999999999988753 344443 455555555555422 2334555666666654 2222333344
Q ss_pred HHHHHHHHhcCCCCCHH----HH-hhHhHHHHHHHhc-hhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCc-
Q 001804 701 MLLWEATISHAPVMVPQ----LL-AYFPCLVEIMERS-FDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNV- 773 (1011)
Q Consensus 701 l~L~~~l~~~~~~~~~~----l~-~lf~~l~~~l~~~-~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~- 773 (1011)
+|-++.++++...-.|+ +- .+||.+..+++++ .|+++-++.++.-.+-..+.. ...+....++..++...
T Consensus 93 FEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~---~~p~~y~~L~~~Ll~p~l 169 (435)
T PF03378_consen 93 FESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSS---PLPDAYKQLFPPLLSPAL 169 (435)
T ss_dssp HHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS-----S--TTTGGGHHHHTSGGG
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCcHHHHHHHHHHcCcch
Confidence 55677778875544444 32 4889888888865 789998888887666666511 11222233444444311
Q ss_pred --cchhHhhHHHHHHHHHHhCCC
Q 001804 774 --NDKGLLIILPVIDMLIQCFPI 794 (1011)
Q Consensus 774 --~~~~~~~~~~l~e~ll~~~~~ 794 (1011)
....+-...+++...++..+.
T Consensus 170 We~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 170 WERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp GGSTTTHHHHHHHHHHHHHHHGG
T ss_pred hccCCCcCcHHHHHHHHHHhCch
Confidence 111233345677777777654
No 64
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.51 E-value=0.22 Score=52.37 Aligned_cols=170 Identities=20% Similarity=0.255 Sum_probs=105.4
Q ss_pred cCCChHHHHHHHHHHHHhhhhc--CCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchHHHH
Q 001804 559 MDKDLSVRLAACRSLCSHIEDA--NFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYANKL 635 (1011)
Q Consensus 559 ~d~~~~Vr~~A~~aL~~~~~~~--~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L 635 (1011)
.+.|=-.|..|...|+.++... ....+.+.+++..++..+...++.....=++. .+.+++.++..++ ++.||+..+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~-A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKT-ACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHH-HHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHhHhHHHHHHHH
Confidence 3567788999999999998764 11233455555555566666666553322232 6789999999999 599999999
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC--
Q 001804 636 VQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV-- 713 (1011)
Q Consensus 636 ~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~-- 713 (1011)
+|.|.....+ ....++..+-+|+..++..++. ....+.+++...++..+| ..-..+++.+..++...+.
T Consensus 96 l~~Ll~~~~~--~~~~i~~~a~~~L~~i~~~~~~----~~~~~~~~l~~~~~~Kn~---~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 96 LPPLLKKLGD--SKKFIREAANNALDAIIESCSY----SPKILLEILSQGLKSKNP---QVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H------HHHHHHHHHHTT-S-H---HHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHcc--ccHHHHHHHHHHHHHHHHHCCc----HHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHccchH
Confidence 9988876543 2467888889999999887661 112347888887765433 4556777888888777651
Q ss_pred --CCHH--HHhhHhHHHHHHHhchhhHHH
Q 001804 714 --MVPQ--LLAYFPCLVEIMERSFDHLQV 738 (1011)
Q Consensus 714 --~~~~--l~~lf~~l~~~l~~~~~~l~~ 738 (1011)
+... +-.+.+.+..++.++...+|.
T Consensus 167 ~~l~~~~~~~~l~~~l~~~l~D~~~~VR~ 195 (228)
T PF12348_consen 167 SVLQKSAFLKQLVKALVKLLSDADPEVRE 195 (228)
T ss_dssp GGG--HHHHHHHHHHHHHHHTSS-HHHHH
T ss_pred hhhcccchHHHHHHHHHHHCCCCCHHHHH
Confidence 2222 345788888888887766665
No 65
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.32 E-value=1.9 Score=47.45 Aligned_cols=177 Identities=14% Similarity=0.155 Sum_probs=108.3
Q ss_pred hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhh
Q 001804 499 LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 499 l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
+.++....+++.+.++|.++++++ -+|.++.-++|-++- ++.+.....+..+.+.+...+..||..|..++-.++-
T Consensus 18 ~~~~~~l~~ll~~lI~P~v~~~~~---~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~ 93 (298)
T PF12719_consen 18 LSPNISLESLLDSLILPAVQSSDP---AVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLL 93 (298)
T ss_pred CCCcchHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 444455567788889999999988 799999999999986 2345556666667777754588999999999988775
Q ss_pred hcCCCcccc--------ccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhcc--c
Q 001804 579 DANFSERDF--------TDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKLVQFFQKVWEESS--G 648 (1011)
Q Consensus 579 ~~~~~~~~l--------~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~~~L~~~L~~lw~~~~--~ 648 (1011)
.++. +.+ ......+++.+.+.+... ..+.+..+.+.+..+.- .|.+.+ ...++..|.-+|=+.. +
T Consensus 94 ~~g~--~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL-~~~i~~-~~~vL~~Lll~yF~p~t~~ 168 (298)
T PF12719_consen 94 THGI--DIFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLL-SGRISD-PPKVLSRLLLLYFNPSTED 168 (298)
T ss_pred HcCc--hhccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHh-cCCCCc-HHHHHHHHHHHHcCcccCC
Confidence 5431 122 223456777777777665 33433333344433331 112333 2455566666665432 2
Q ss_pred cchHHHHHHHHHHHHHHHcCCCC----cchhhhHHHHHHhhcCC
Q 001804 649 ESLLQIQLLIALRNFVVALGYQS----HNCYSMLLPILRRGIDI 688 (1011)
Q Consensus 649 ~~~~~~~~l~~l~~l~~a~~~~~----~~~~~~~~Pvi~~~l~~ 688 (1011)
+..++ .|++.........+ ..+...++|.++...+.
T Consensus 169 ~~~Lr----Q~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 169 NQRLR----QCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred cHHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 33333 56666666555433 23446667777776654
No 66
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=10 Score=46.59 Aligned_cols=270 Identities=12% Similarity=0.117 Sum_probs=146.7
Q ss_pred HHHHHHHHHHhhh-HhhcCCCChHHHHHHHhhHhhh-ccCCCchhHHHHHHHHHHhhhccC--Cc----chHHHHHHHHH
Q 001804 484 LKDAAYGAAAYVY-YELSNYLSFKDWFNGALSLDLS-NDHPNMHIIHRKVAIILGQWVSEI--KD----DTKRAVYCALI 555 (1011)
Q Consensus 484 ~keA~l~alg~~a-~~l~~~~~~~~~l~~~ll~~l~-~~~~~~~~lR~ra~~~lg~~~~~~--~~----~~~~~~~~~ll 555 (1011)
.|-=|.-.+|..+ ..+++...+.+-+.. ....|. |. ..| ||--|+..+.-|.+.. .+ +..+++++-++
T Consensus 478 Lrarac~vl~~~~~~df~d~~~l~~ale~-t~~~l~~d~--~lP-V~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL 553 (1010)
T KOG1991|consen 478 LRARACWVLSQFSSIDFKDPNNLSEALEL-THNCLLNDN--ELP-VRVEAALALQSFISNQEQADEKVSAHVPPIMQELL 553 (1010)
T ss_pred HHHHHHHHHHHHHhccCCChHHHHHHHHH-HHHHhccCC--cCc-hhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHH
Confidence 3333444555555 335554444333332 245565 43 334 9999999999998842 22 35688888888
Q ss_pred hhccC--CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHh--------hhhhhHH----HHHHHHHHH
Q 001804 556 KLLMD--KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEV--------QEFDSKV----QVLNLISIL 621 (1011)
Q Consensus 556 ~~L~d--~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~--------~~~e~~~----~l~~~l~~i 621 (1011)
++.++ +|.. ...+..++..+ .+++.||...+.++|...+.++ +..+-|. -++.+|+++
T Consensus 554 ~L~ne~End~L-----t~vme~iV~~f---seElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Ti 625 (1010)
T KOG1991|consen 554 KLSNEVENDDL-----TNVMEKIVCKF---SEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTI 625 (1010)
T ss_pred HHHHhcchhHH-----HHHHHHHHHHH---HHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHH
Confidence 88874 3321 24577788776 5799999999988886554332 1112122 267888888
Q ss_pred HHhhcc---ccchHH-HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhh
Q 001804 622 IGHVSE---VIPYAN-KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLL 697 (1011)
Q Consensus 622 i~~~~e---i~p~~~-~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~ 697 (1011)
+.++++ +..+.. .+.+....+.++.. .-+-..+++.+..+.-..++-++.+. -++|++..++.. ...+|+
T Consensus 626 l~s~e~~p~vl~~le~~~l~vi~~iL~~~i--~dfyeE~~ei~~~~t~~~~~Isp~mW-~ll~li~e~~~~---~~~dyf 699 (1010)
T KOG1991|consen 626 LLSLENHPEVLKQLEPIVLPVIGFILKNDI--TDFYEELLEIVSSLTFLSKEISPIMW-GLLELILEVFQD---DGIDYF 699 (1010)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHhhhhhhhcccCHHHH-HHHHHHHHHHhh---hhHHHH
Confidence 888873 322222 22222222222211 11222344444444333333333343 366777777764 457888
Q ss_pred hhHHHHHHHHHh-cCCC-C-CHHHH-hhHhHHHHHHHh---chhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhh
Q 001804 698 EDSMLLWEATIS-HAPV-M-VPQLL-AYFPCLVEIMER---SFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVV 770 (1011)
Q Consensus 698 e~~l~L~~~l~~-~~~~-~-~~~l~-~lf~~l~~~l~~---~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l 770 (1011)
++...++...+. +.++ . .|... -++..+-.++.. ..+...-+..+++..++--...+=|.....+--++..+.
T Consensus 700 ~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~ 779 (1010)
T KOG1991|consen 700 TDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPLFLELALSRLT 779 (1010)
T ss_pred HHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHh
Confidence 899988885544 4443 2 22222 355555556654 234566677888776665333222322333344444444
Q ss_pred c
Q 001804 771 G 771 (1011)
Q Consensus 771 ~ 771 (1011)
.
T Consensus 780 ~ 780 (1010)
T KOG1991|consen 780 R 780 (1010)
T ss_pred c
Confidence 3
No 67
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.10 E-value=0.048 Score=50.51 Aligned_cols=105 Identities=21% Similarity=0.094 Sum_probs=69.6
Q ss_pred HHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc---chH-HHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcc
Q 001804 510 NGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD---DTK-RAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSER 585 (1011)
Q Consensus 510 ~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~---~~~-~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~ 585 (1011)
.+.++..++++++ -+|..++|+++..+...++ ... ..+++.++.+|.|++..||..|+.+|.+++.+.+ +
T Consensus 9 i~~l~~~l~~~~~---~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~---~ 82 (120)
T cd00020 9 LPALVSLLSSSDE---NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE---D 82 (120)
T ss_pred hHHHHHHHHcCCH---HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH---H
Confidence 3456666777665 6999999999999875322 222 3678888999999999999999999999987632 1
Q ss_pred cccc-chHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 001804 586 DFTD-LLPICWDSCFKLVEEVQEFDSKVQVLNLISIL 621 (1011)
Q Consensus 586 ~l~p-~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~i 621 (1011)
...- .-..++..+.++++..+ .+.+.....++..+
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l 118 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHh
Confidence 1111 11235666777776653 23344455555544
No 68
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.09 E-value=0.1 Score=51.61 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=91.0
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH---HH
Q 001804 547 KRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISIL---IG 623 (1011)
Q Consensus 547 ~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~i---i~ 623 (1011)
....++.+...|...+-|-|.-|...+..+++.- .++.+.|.+|+++.-+-+.++.-+ .+.....+.+|+.+ -+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~--~~~kilPvlPqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERG--GGEKILPVLPQLIIPLKRALNTRD-PEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhh
Confidence 4667777788888788888999999999999872 467899999999999999998653 35566688999988 56
Q ss_pred hhcc-ccchHHHHHHHHHHHHhhc---c------ccchHHHHHHHHHHHHHHHcCCC
Q 001804 624 HVSE-VIPYANKLVQFFQKVWEES---S------GESLLQIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 624 ~~~e-i~p~~~~L~~~L~~lw~~~---~------~~~~~~~~~l~~l~~l~~a~~~~ 670 (1011)
.+|+ +.||..+|+|.+.-.-+.. + .+..+...+-+||..+-..-|++
T Consensus 113 ~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 6775 8999999999887433322 1 22345556667777777766665
No 69
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.93 E-value=1.4 Score=47.06 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=120.9
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhccCC-----cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccc
Q 001804 514 SLDLSNDHPNMHIIHRKVAIILGQWVSEIK-----DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFT 588 (1011)
Q Consensus 514 l~~l~~~~~~~~~lR~ra~~~lg~~~~~~~-----~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~ 588 (1011)
-+.|.++++ .+|.|+..+++...+.++ .+....+.+...+.|.|.. .|+ .|..++..++....+..+.
T Consensus 5 g~~Ltsed~---~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~-~~l~gl~~L~~~~~~~~~~-- 77 (262)
T PF14500_consen 5 GEYLTSEDP---IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQ-PALKGLLALVKMKNFSPES-- 77 (262)
T ss_pred hhhhCCCCH---HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHH-HHHHHHHHHHhCcCCChhh--
Confidence 356677776 899999999998887654 3445667777777775432 233 3467777777544444444
Q ss_pred cchHHHHHHHHHHHh-HhhhhhhHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Q 001804 589 DLLPICWDSCFKLVE-EVQEFDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVA 666 (1011)
Q Consensus 589 p~l~~il~~L~~ll~-~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a 666 (1011)
...+++.+++-.. +......+..++..+..++++.. ++.......+..+.+..+...| +.--.-+++.+..++..
T Consensus 78 --~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkD-PRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 78 --AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKD-PRNLLLSFKLLKVILQE 154 (262)
T ss_pred --HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHh
Confidence 4555555553211 11122346679999999999988 4766666666666666553323 22112244555555554
Q ss_pred cCCC--CcchhhhHHHHHHhhcCC--CCCCcchhhhhHHHHHHHHHhcCCCCCHHHH-hhHhHHHHHHHhc-----hhhH
Q 001804 667 LGYQ--SHNCYSMLLPILRRGIDI--NSPDELNLLEDSMLLWEATISHAPVMVPQLL-AYFPCLVEIMERS-----FDHL 736 (1011)
Q Consensus 667 ~~~~--~~~~~~~~~Pvi~~~l~~--~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~-~lf~~l~~~l~~~-----~~~l 736 (1011)
..-. .+.+...+..-+=-.+.+ ++|.. ...=||-.++..... -+|.+- ..||.++.-+..+ .|-+
T Consensus 155 ~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~----IT~edLk~~L~~cl~-s~~~fa~~~~p~LleKL~s~~~~~K~D~L 229 (262)
T PF14500_consen 155 FDISEFAEDLFDVFSCYFPITFRPPPNDPYG----ITREDLKRALRNCLS-STPLFAPFAFPLLLEKLDSTSPSVKLDSL 229 (262)
T ss_pred cccchhHHHHHHHhhheeeeeeeCCCCCCCC----CCHHHHHHHHHHHhc-CcHhhHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4321 111222111111111222 23321 223334443333322 234443 4788888888653 3666
Q ss_pred HHHHHHHHHHHhcchhhhh
Q 001804 737 QVAINIIEGYIILGGTDFL 755 (1011)
Q Consensus 737 ~~~~~il~~yi~lg~~~~l 755 (1011)
+.+..|+++| |+..+.
T Consensus 230 ~tL~~c~~~y---~~~~~~ 245 (262)
T PF14500_consen 230 QTLKACIENY---GADSLS 245 (262)
T ss_pred HHHHHHHHHC---CHHHHH
Confidence 7777777766 555443
No 70
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.80 E-value=8.6 Score=44.49 Aligned_cols=194 Identities=16% Similarity=0.231 Sum_probs=109.7
Q ss_pred HHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhh
Q 001804 547 KRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHV 625 (1011)
Q Consensus 547 ~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~ 625 (1011)
...+++.+++... ..+..+|..++.++..+++.+. .++ .+..+++.+..-.......+.+...++.+.-+.+..
T Consensus 187 ~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~-~~~----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaL 261 (415)
T PF12460_consen 187 LEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWP-DDD----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKAL 261 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC-Chh----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHH
Confidence 4446677776654 4568899999999999999864 233 445555555544411112222333344443333332
Q ss_pred c-cccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH----cCCC---------CcchhhhHHHHHHhhcCCCCC
Q 001804 626 S-EVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVA----LGYQ---------SHNCYSMLLPILRRGIDINSP 691 (1011)
Q Consensus 626 ~-ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a----~~~~---------~~~~~~~~~Pvi~~~l~~~~~ 691 (1011)
= .-.|.+..+...|..++.+.+ +...+-+.+.-++.- +... .++++..++|.+-...+..+.
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~~~----~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~ 337 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSSPE----LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD 337 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCChh----hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh
Confidence 2 234667777777777665421 111112222222221 1111 135567778877777664332
Q ss_pred CcchhhhhHHHHHHHHHhcCCC--CCHHHHhhHhHHHHHHHhc-hhhHHHHHHHHHHHHhcchh
Q 001804 692 DELNLLEDSMLLWEATISHAPV--MVPQLLAYFPCLVEIMERS-FDHLQVAINIIEGYIILGGT 752 (1011)
Q Consensus 692 ~~~~l~e~~l~L~~~l~~~~~~--~~~~l~~lf~~l~~~l~~~-~~~l~~~~~il~~yi~lg~~ 752 (1011)
.. -..-+--++.++++.|. +-+++-.++|.++.++..+ .+.....+.++...+.=.++
T Consensus 338 ~~---k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 338 EI---KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred hh---HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 21 12334568888888874 5677888999999999753 44556677777776665543
No 71
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.76 E-value=0.047 Score=37.08 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=25.9
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhhhh
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHIED 579 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~ 579 (1011)
+++.++++++|++..||.+|+.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 468889999999999999999999998764
No 72
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.20 E-value=2.1 Score=47.16 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=114.5
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc--c-
Q 001804 551 YCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS--E- 627 (1011)
Q Consensus 551 ~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~--e- 627 (1011)
+...+..+.+.....|..|..++..++... +..+.+......++..+.+.+++-...| ....+.+++.++-.+| +
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~~~d~v~~~~~tL~~~~~k~lkkg~~~E-~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR-YLPDFVEDRRETLLDALLKSLKKGKSEE-QALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHhccCCHHH-HHHHHHHHHHHhhhcCCCcc
Confidence 455566667777889999999988877542 2455677778889999999998776545 3446788899988876 3
Q ss_pred ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchh---hhHHHHHHhhcCCCC--------CCcchh
Q 001804 628 VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCY---SMLLPILRRGIDINS--------PDELNL 696 (1011)
Q Consensus 628 i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~---~~~~Pvi~~~l~~~~--------~~~~~l 696 (1011)
..-.+..+.|.|.+.........-.|.+++.||+-+.--.+.+...+. ..+--++....-..+ ++...+
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 455778888888888776544556778888888776665555543333 222223332221111 112358
Q ss_pred hhhHHHHHHHHHhcCCC--CCHHHHhhHhHHHHHHHh
Q 001804 697 LEDSMLLWEATISHAPV--MVPQLLAYFPCLVEIMER 731 (1011)
Q Consensus 697 ~e~~l~L~~~l~~~~~~--~~~~l~~lf~~l~~~l~~ 731 (1011)
...||.=|..++...+. +...+-..+|.+..+++.
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDS 239 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 88999999888755442 222222345555554443
No 73
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.82 E-value=2.4 Score=45.41 Aligned_cols=213 Identities=15% Similarity=0.155 Sum_probs=137.0
Q ss_pred chhHHHHHHHHHHHhhhHhhcCC-CCh--HHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhc--cCCcchHHHHHHHH
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNY-LSF--KDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS--EIKDDTKRAVYCAL 554 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~-~~~--~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~--~~~~~~~~~~~~~l 554 (1011)
++...|.-|+..++.+-..+.+. ++- -+.+..++...+.|... ++.. +-.+..... .++++....+.+.+
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~----~~~~-l~gl~~L~~~~~~~~~~~~~i~~~l 85 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHAC----VQPA-LKGLLALVKMKNFSPESAVKILRSL 85 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhh----HHHH-HHHHHHHHhCcCCChhhHHHHHHHH
Confidence 56788999999988877665422 221 23466677777766543 3222 333333332 35666677777777
Q ss_pred Hhhcc--CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchH
Q 001804 555 IKLLM--DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYA 632 (1011)
Q Consensus 555 l~~L~--d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~ 632 (1011)
.+... .....+|..+-.-+..++++. .+.+...-+..+..++++++.-......+.+.+.+..++..+. +.+++
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~-~~~~~ 161 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD-ISEFA 161 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc-cchhH
Confidence 76554 335568888888888888874 4566666778888888888766666667777888888887777 35555
Q ss_pred HHHHHHHHH----HHhhccccc------hHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHH
Q 001804 633 NKLVQFFQK----VWEESSGES------LLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSML 702 (1011)
Q Consensus 633 ~~L~~~L~~----lw~~~~~~~------~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~ 702 (1011)
+.+...+.- -.....+++ -++.++.+|++ . .+.|.++++|.+-.-++.+++. .-.|+|+
T Consensus 162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-------s-~~~fa~~~~p~LleKL~s~~~~---~K~D~L~ 230 (262)
T PF14500_consen 162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-------S-TPLFAPFAFPLLLEKLDSTSPS---VKLDSLQ 230 (262)
T ss_pred HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-------C-cHhhHHHHHHHHHHHHcCCCcH---HHHHHHH
Confidence 555444333 223333322 34444444442 1 2468899999999999875554 4478888
Q ss_pred HHHHHHhcCC
Q 001804 703 LWEATISHAP 712 (1011)
Q Consensus 703 L~~~l~~~~~ 712 (1011)
.+...+...+
T Consensus 231 tL~~c~~~y~ 240 (262)
T PF14500_consen 231 TLKACIENYG 240 (262)
T ss_pred HHHHHHHHCC
Confidence 8888877654
No 74
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.52 E-value=5.9 Score=48.14 Aligned_cols=143 Identities=17% Similarity=0.089 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccC
Q 001804 481 GLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMD 560 (1011)
Q Consensus 481 ~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d 560 (1011)
|...|.=+|+=+-..+.. .+ +.--.-.+.+..++++++| .+|.-|.-++|..- .++..+.++..+..++.|
T Consensus 68 d~ElKrL~ylYl~~yak~-~P--~~~lLavNti~kDl~d~N~---~iR~~AlR~ls~l~---~~el~~~~~~~ik~~l~d 138 (757)
T COG5096 68 DVELKRLLYLYLERYAKL-KP--ELALLAVNTIQKDLQDPNE---EIRGFALRTLSLLR---VKELLGNIIDPIKKLLTD 138 (757)
T ss_pred CHHHHHHHHHHHHHHhcc-CH--HHHHHHHHHHHhhccCCCH---HHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccC
Confidence 445666666655555432 11 1111234667889999988 89999888887653 257789999999999999
Q ss_pred CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHH
Q 001804 561 KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFF 639 (1011)
Q Consensus 561 ~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L 639 (1011)
++..||-+|+-|+..+.+- ++ .+.+=++ ....+-.++.+. +... +-.++.++.+-..+ ..||...+...+
T Consensus 139 ~~ayVRk~Aalav~kly~l---d~-~l~~~~g-~~~~l~~l~~D~---dP~V-i~nAl~sl~~i~~e~a~~~~~~~~~~i 209 (757)
T COG5096 139 PHAYVRKTAALAVAKLYRL---DK-DLYHELG-LIDILKELVADS---DPIV-IANALASLAEIDPELAHGYSLEVILRI 209 (757)
T ss_pred CcHHHHHHHHHHHHHHHhc---CH-hhhhccc-HHHHHHHHhhCC---CchH-HHHHHHHHHHhchhhhhhHHHHHHHHh
Confidence 9999999999999988653 12 2221111 222223333333 2222 56778888877776 788888777777
Q ss_pred HH
Q 001804 640 QK 641 (1011)
Q Consensus 640 ~~ 641 (1011)
++
T Consensus 210 ~~ 211 (757)
T COG5096 210 PQ 211 (757)
T ss_pred hh
Confidence 76
No 75
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.43 E-value=1.9 Score=58.06 Aligned_cols=219 Identities=15% Similarity=0.125 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhhhHhhcCCCC---hHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchH-----HHHHHHH
Q 001804 483 LLKDAAYGAAAYVYYELSNYLS---FKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTK-----RAVYCAL 554 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~~~~~---~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~-----~~~~~~l 554 (1011)
..|+-|..+++.++.+=.+..+ ... ..+-++..+++.+. -+|.-++|.++.......++.+ .-+.+.+
T Consensus 624 ~ikk~Aa~iLsnL~a~~~d~~~avv~ag-aIpPLV~LLss~~~---~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL 699 (2102)
T PLN03200 624 ETQEKAASVLADIFSSRQDLCESLATDE-IINPCIKLLTNNTE---AVATQSARALAALSRSIKENRKVSYAAEDAIKPL 699 (2102)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcC-CHHHHHHHHhcCCh---HHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHH
Confidence 4555555777666543111100 000 11223445555543 4899999999999864333322 2357778
Q ss_pred HhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc--c-ccch
Q 001804 555 IKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS--E-VIPY 631 (1011)
Q Consensus 555 l~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~--e-i~p~ 631 (1011)
+.+|.+++..|+..|+.||.+++.+.+... .+.. ...+..|+.++++-. .+.|.....+|..+..+.. + +..+
T Consensus 700 ~~LL~~~d~~v~e~Al~ALanLl~~~e~~~-ei~~--~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~~~~~~~~~~~~ 775 (2102)
T PLN03200 700 IKLAKSSSIEVAEQAVCALANLLSDPEVAA-EALA--EDIILPLTRVLREGT-LEGKRNAARALAQLLKHFPVDDVLKDS 775 (2102)
T ss_pred HHHHhCCChHHHHHHHHHHHHHHcCchHHH-HHHh--cCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 888989999999999999999998754222 2221 345778888888764 4567778888888887776 2 3344
Q ss_pred HH--HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC---Ccchh------hhHHHHHHhhcCCCCCCcchhhhhH
Q 001804 632 AN--KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ---SHNCY------SMLLPILRRGIDINSPDELNLLEDS 700 (1011)
Q Consensus 632 ~~--~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~---~~~~~------~~~~Pvi~~~l~~~~~~~~~l~e~~ 700 (1011)
+. -.+.+|..+.+..+-+...-...++.+..+++.=+.. ++.++ .-+-|+++.. .. ....+.+-+
T Consensus 776 ~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~---~~p~~~~ka 851 (2102)
T PLN03200 776 VQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AE---GHPLVQDKA 851 (2102)
T ss_pred HHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH-Hc---CChHHHHHH
Confidence 33 2344556666655555555556788888888853222 22333 2355665544 43 334688999
Q ss_pred HHHHHHHHhcCCC
Q 001804 701 MLLWEATISHAPV 713 (1011)
Q Consensus 701 l~L~~~l~~~~~~ 713 (1011)
+++++.+.+-.|.
T Consensus 852 i~il~~~~~~~~~ 864 (2102)
T PLN03200 852 IEILSRLCRDQPV 864 (2102)
T ss_pred HHHHHHHhccChh
Confidence 9999999876554
No 76
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=29 Score=43.40 Aligned_cols=222 Identities=15% Similarity=0.093 Sum_probs=118.3
Q ss_pred cccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh-h-cCCCChHHHHHHHh
Q 001804 436 KLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE-L-SNYLSFKDWFNGAL 513 (1011)
Q Consensus 436 ~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~-l-~~~~~~~~~l~~~l 513 (1011)
.+|=+++..+..+..+.+-.+...++.-+-+..+ |. ++...|. ++.+|++-+|.. + .++. ++ -+.+.+
T Consensus 356 ~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~--p~---e~~~aWH---gacLaLAELA~rGlLlps~-l~-dVvplI 425 (1133)
T KOG1943|consen 356 VVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFN--PA---EDDSAWH---GACLALAELALRGLLLPSL-LE-DVVPLI 425 (1133)
T ss_pred hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcC--cC---CchhHHH---HHHHHHHHHHhcCCcchHH-HH-HHHHHH
Confidence 4677788877777777664333322222222222 21 2345686 999999988854 2 1110 11 134444
Q ss_pred hHhhhc-----cCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc-----CCChHHHHHHHHHHHHhhhhcCCC
Q 001804 514 SLDLSN-----DHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM-----DKDLSVRLAACRSLCSHIEDANFS 583 (1011)
Q Consensus 514 l~~l~~-----~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~-----d~~~~Vr~~A~~aL~~~~~~~~~~ 583 (1011)
+..+.- ++.....+|-.||.++-.|+...++....++.+.+.++|- |++.-+|-+|..||...+....
T Consensus 426 ~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~-- 503 (1133)
T KOG1943|consen 426 LKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQG-- 503 (1133)
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCC--
Confidence 444432 2222236999999998888876666655566665555542 9999999999999998886521
Q ss_pred ccccccchHHHHHH--HHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 001804 584 ERDFTDLLPICWDS--CFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIAL 660 (1011)
Q Consensus 584 ~~~l~p~l~~il~~--L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l 660 (1011)
=.|+--+++.. .+.+-+.. ..+..+..-+..++. ..|..+.+...=..-|.. ..+...-.++
T Consensus 504 ---n~p~Gi~Lis~~dy~sV~~rs-------Ncy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~-----~irelaa~aL 568 (1133)
T KOG1943|consen 504 ---NFPHGISLISTIDYFSVTNRS-------NCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDV-----KIRELAAYAL 568 (1133)
T ss_pred ---CCCCchhhhhhcchhhhhhhh-------hHHHHHhHHHHhhhhHHHHHHHHHHhcccccccH-----HHHHHHHHHH
Confidence 11333333332 22322222 244555555555554 455555554442334642 2333333344
Q ss_pred HHHHHHcCCCCcchh-hhHHHHHHhhcC
Q 001804 661 RNFVVALGYQSHNCY-SMLLPILRRGID 687 (1011)
Q Consensus 661 ~~l~~a~~~~~~~~~-~~~~Pvi~~~l~ 687 (1011)
..+..-- |.-+. .+++|++...+.
T Consensus 569 ~~Ls~~~---pk~~a~~~L~~lld~~ls 593 (1133)
T KOG1943|consen 569 HKLSLTE---PKYLADYVLPPLLDSTLS 593 (1133)
T ss_pred HHHHHhh---HHhhcccchhhhhhhhcC
Confidence 4422211 11222 356777777665
No 77
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=25 Score=42.46 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh-hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHH
Q 001804 456 LGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE-LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAII 534 (1011)
Q Consensus 456 l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~-l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~ 534 (1011)
+.-.+.+.+++-++ +.+-...=.|++++|.++.. +... +-+-+-..++.++| ++|..|..|
T Consensus 104 vllLltNslknDL~---------s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~---~irKKA~Lc 165 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLN---------SSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDP---YIRKKAALC 165 (866)
T ss_pred HHHHHHHHHHhhcc---------CCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCH---HHHHHHHHH
Confidence 34456777777664 23345566789999988743 3221 33334445666777 999999999
Q ss_pred HHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhh
Q 001804 535 LGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 535 lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~ 577 (1011)
.-|+..+. |+....+......+|.+.+.-|=.++..=+-.+|
T Consensus 166 a~r~irK~-P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 166 AVRFIRKV-PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred HHHHHHcC-chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 99998864 3445555566666666666555444443333333
No 78
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=26 Score=41.28 Aligned_cols=147 Identities=18% Similarity=0.205 Sum_probs=115.7
Q ss_pred HHHHHHHHHh-cCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCC
Q 001804 9 PAIYTLLANS-MSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGIS 87 (1011)
Q Consensus 9 ~~l~~~L~~s-~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~ 87 (1011)
.+|..+-+.. -|.|++.|.+||..|.++...|++.+-.+-++...+. +.-..+|+-.|-..|.++= ++|
T Consensus 5 aqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~gs~---pYs~mlAst~L~Klvs~~t-------~lp 74 (1082)
T KOG1410|consen 5 AQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLERGSY---PYSQMLASTCLMKLVSRKT-------PLP 74 (1082)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHHcCCC-------CCc
Confidence 3444444443 3789999999999999999999999999999988763 4567778887777776653 299
Q ss_pred HHHHHHHHHHHHhHHhhc----hHHHHHHHHHHHHHHHhhhCCC------CchhhHHHHHHHhccCCHHHHhHHHHHHHH
Q 001804 88 NEEKVHLRQKLLTHLREE----NNQVAQMLAVLISKIARFDYPR------EWPQLFSVLAQQLQAADVLTSHRIFMILFR 157 (1011)
Q Consensus 88 ~e~K~~Ir~~ll~~L~~~----~~~ir~~~a~~i~~Ia~~d~P~------~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~ 157 (1011)
-+.|-.||.-++.-|... .+-|-..+..++++|-+.+|-+ -+-+.+..+...++.++..+-.-++.+|..
T Consensus 75 l~qrldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 75 LEQRLDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKLGWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhccccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Confidence 999999999999999762 3557778888999998887752 245788999999998887777778888888
Q ss_pred HHHHhhcc
Q 001804 158 TLKELSTK 165 (1011)
Q Consensus 158 v~k~~~~~ 165 (1011)
.+.++...
T Consensus 155 LvqemN~~ 162 (1082)
T KOG1410|consen 155 LVQEMNQA 162 (1082)
T ss_pred HHHHhhCC
Confidence 88887543
No 79
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.62 E-value=30 Score=41.88 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=71.0
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
++...|.-+|+|.-..=+. .-|.--.+++.+.++|++++. ++-.-|.-++|+. +++|..+.+++-+-.+|+
T Consensus 82 ~~f~dKRiGYLaamLlLdE---~qdvllLltNslknDL~s~nq---~vVglAL~alg~i---~s~EmardlapeVe~Ll~ 152 (866)
T KOG1062|consen 82 DNFLDKRIGYLAAMLLLDE---RQDLLLLLTNSLKNDLNSSNQ---YVVGLALCALGNI---CSPEMARDLAPEVERLLQ 152 (866)
T ss_pred CCchHHHHHHHHHHHHhcc---chHHHHHHHHHHHhhccCCCe---eehHHHHHHhhcc---CCHHHhHHhhHHHHHHHh
Confidence 4677888888887765433 224444577888889988765 6777777777766 567888889999999999
Q ss_pred CCChHHHHHHHHHHHHhhhhc
Q 001804 560 DKDLSVRLAACRSLCSHIEDA 580 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~~~~~ 580 (1011)
.++.-||-.|+.|.-.++...
T Consensus 153 ~~~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 153 HRDPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred CCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999998888763
No 80
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=92.52 E-value=1.8 Score=47.15 Aligned_cols=160 Identities=13% Similarity=0.118 Sum_probs=99.5
Q ss_pred chhHHHHHHH-HHHHhhhH-h-----hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcch------
Q 001804 480 PGLLLKDAAY-GAAAYVYY-E-----LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDT------ 546 (1011)
Q Consensus 480 ~~~~~keA~l-~alg~~a~-~-----l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~------ 546 (1011)
+.|+...+.. .++..+.. . +.++.+ ++.+.++..+.|..+ -+|.+.|.++..+...+++..
T Consensus 87 ~~WK~~~~~~~~~l~w~v~~~~~~~~i~~~~~---liiP~iL~llDD~~~---~~K~~G~~lL~~ll~~~~~~~~~~L~~ 160 (282)
T PF10521_consen 87 QPWKSNPGLASHVLSWIVLSQLDRPWISQHWP---LIIPPILNLLDDYSP---EIKIQGCQLLHHLLEKVPAAEWDILRR 160 (282)
T ss_pred CCcccCCcccHHHHHHHHHhcCCcchHHHhhh---HHHhhHHHHhcCCCH---HHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 3688887543 44444443 2 333343 366666666666655 699999999999998654333
Q ss_pred ---HHHHHHHHHhhcc--------CCChHHHHHHHHHHHHhhhhc-CCCccccccchHHHHHH-HHHHHhHhhh---hhh
Q 001804 547 ---KRAVYCALIKLLM--------DKDLSVRLAACRSLCSHIEDA-NFSERDFTDLLPICWDS-CFKLVEEVQE---FDS 610 (1011)
Q Consensus 547 ---~~~~~~~ll~~L~--------d~~~~Vr~~A~~aL~~~~~~~-~~~~~~l~p~l~~il~~-L~~ll~~~~~---~e~ 610 (1011)
...+++++.+++. +....+=..|..|+..++.-- ......-...+..++.. ++.-+..... .+.
T Consensus 161 tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l 240 (282)
T PF10521_consen 161 TGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRL 240 (282)
T ss_pred cChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhH
Confidence 5667777777776 455666667777888775431 10112222333333333 4443332222 343
Q ss_pred HHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhh
Q 001804 611 KVQVLNLISILIGHVS-EVIPYANKLVQFFQKVWEE 645 (1011)
Q Consensus 611 ~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~lw~~ 645 (1011)
...+++.+..+++.+| ....|...|++.|.+..++
T Consensus 241 ~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 241 RTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence 4457899999999999 5788999999988886554
No 81
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=21 Score=42.70 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=101.7
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh---hcCCCChHHHHHHHhhHhhhccCCCchhH---
Q 001804 454 QLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE---LSNYLSFKDWFNGALSLDLSNDHPNMHII--- 527 (1011)
Q Consensus 454 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~---l~~~~~~~~~l~~~ll~~l~~~~~~~~~l--- 527 (1011)
..++.++++.+.+.++ +..-..|.-|++|++.+... |.+ |-.+.+..+|..+......+..|+
T Consensus 129 ~ELlepl~p~Iracle---------HrhsYVRrNAilaifsIyk~~~~L~p--DapeLi~~fL~~e~DpsCkRNAFi~L~ 197 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLE---------HRHSYVRRNAILAIFSIYKNFEHLIP--DAPELIESFLLTEQDPSCKRNAFLMLF 197 (948)
T ss_pred HHHhhhhHHHHHHHHh---------CcchhhhhhhheeehhHHhhhhhhcC--ChHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3466677888887775 23446677778888877644 322 333445555543322111000011
Q ss_pred ---HHHHHHHHHhhhccC---------------------CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCC
Q 001804 528 ---HRKVAIILGQWVSEI---------------------KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFS 583 (1011)
Q Consensus 528 ---R~ra~~~lg~~~~~~---------------------~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~ 583 (1011)
+.||..-++.....+ .|+.....++.+.++|...+..|+..|+.+|-++-.+
T Consensus 198 ~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~---- 273 (948)
T KOG1058|consen 198 TTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND---- 273 (948)
T ss_pred hcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC----
Confidence 223332222222211 2344556677788888888889999999988776654
Q ss_pred ccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Q 001804 584 ERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRN 662 (1011)
Q Consensus 584 ~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~ 662 (1011)
+..+++ .-+.++.|+-+...++.|.++++-|..+-..-.. +..++..++..|. ..+--++...++..-.
T Consensus 274 p~alk~----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLs------s~dldvr~Ktldi~ld 343 (948)
T KOG1058|consen 274 PTALKA----AASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLS------SPDLDVRSKTLDIALD 343 (948)
T ss_pred HHHHHH----HHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcC------cccccHHHHHHHHHHh
Confidence 344544 4555566665555567788888888887743333 3334444433322 1223344455555444
Q ss_pred HHHH
Q 001804 663 FVVA 666 (1011)
Q Consensus 663 l~~a 666 (1011)
++.+
T Consensus 344 Lvss 347 (948)
T KOG1058|consen 344 LVSS 347 (948)
T ss_pred hhhh
Confidence 4443
No 82
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.38 E-value=0.88 Score=45.48 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=67.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhhc----------CCCccccccchHHH---HH----HHHHHHhHhhhhhhHHHHHHHHHH
Q 001804 558 LMDKDLSVRLAACRSLCSHIEDA----------NFSERDFTDLLPIC---WD----SCFKLVEEVQEFDSKVQVLNLISI 620 (1011)
Q Consensus 558 L~d~~~~Vr~~A~~aL~~~~~~~----------~~~~~~l~p~l~~i---l~----~L~~ll~~~~~~e~~~~l~~~l~~ 620 (1011)
+.|++..||.+|+.++..+++.. +...-.|.|+-..+ +. .|+..++.-.......+++.++..
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~ 128 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAV 128 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 45999999999999999988642 11122566654433 22 233334333233445568888888
Q ss_pred HHHhhc-c-ccc-hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCC
Q 001804 621 LIGHVS-E-VIP-YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGY 669 (1011)
Q Consensus 621 ii~~~~-e-i~p-~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~ 669 (1011)
+|.... + +.+ +...++..+..+..+ .|+-.+.+.+.|++.++..-..
T Consensus 129 Lv~~tPY~rL~~~ll~~~v~~v~~~l~~--~d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 129 LVQATPYHRLPPGLLTEVVTQVRPLLRH--RDPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred HHccCChhhcCHhHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCCC
Confidence 887665 3 433 455555555555544 3555667778888887776554
No 83
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=12 Score=45.36 Aligned_cols=184 Identities=18% Similarity=0.144 Sum_probs=117.1
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhcc---CCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccc
Q 001804 514 SLDLSNDHPNMHIIHRKVAIILGQWVSE---IKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDL 590 (1011)
Q Consensus 514 l~~l~~~~~~~~~lR~ra~~~lg~~~~~---~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~ 590 (1011)
+..+.++.+ -+|+-+.-.+.+|.++ .+-.....++.+.+..|.|.|.-|-+.|.+++..+|+-+ ++.+.
T Consensus 733 i~sl~d~qv---pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy---~e~il-- 804 (982)
T KOG4653|consen 733 ISSLHDDQV---PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVY---PEDIL-- 804 (982)
T ss_pred HHHhcCCcc---cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhc---chhhH--
Confidence 446677665 4899999999999993 223456779999999999999999999999999999875 33332
Q ss_pred hHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCC
Q 001804 591 LPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGY 669 (1011)
Q Consensus 591 l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~ 669 (1011)
|.+.+....--+..+ .|..+.|=+++..++.+.|+ ...|...|......-.. +.+...|++.+..++.++....-
T Consensus 805 -~dL~e~Y~s~k~k~~-~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvr--epd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 805 -PDLSEEYLSEKKKLQ-TDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVR--EPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred -HHHHHHHHhcccCCC-ccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CchHHHHHhHHHHHHHHHHHHhh
Confidence 333333333333332 24455677999999999998 56677777766555443 33667788888888888877642
Q ss_pred C-CcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCC
Q 001804 670 Q-SHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAP 712 (1011)
Q Consensus 670 ~-~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~ 712 (1011)
. +.-+++.+.-++...... +..-.--.|..++..++++++
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d---~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTD---GSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred hhhHHHHHHHHHHHHHHccC---CchhhHHHHHHHHHHHHhccc
Confidence 1 112333332222222211 222334455556555555543
No 84
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=91.96 E-value=1.5 Score=46.57 Aligned_cols=143 Identities=18% Similarity=0.196 Sum_probs=84.9
Q ss_pred HhhHhhhc-cCCCchhHHHHHHHHHHhhhcc-CCcchHH--HHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcccc
Q 001804 512 ALSLDLSN-DHPNMHIIHRKVAIILGQWVSE-IKDDTKR--AVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDF 587 (1011)
Q Consensus 512 ~ll~~l~~-~~~~~~~lR~ra~~~lg~~~~~-~~~~~~~--~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l 587 (1011)
.|+..|+. .+| +++.++++++|..+.. ++.+... .....+..+|.+++..||..|..|+.++..+.+ ....+
T Consensus 16 ~Ll~lL~~t~dp---~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-n~~~I 91 (254)
T PF04826_consen 16 KLLCLLESTEDP---FIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-NQEQI 91 (254)
T ss_pred HHHHHHhcCCCh---HHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-hHHHH
Confidence 45566764 455 8999999999997663 4444432 357888888999999999999999999876543 23467
Q ss_pred ccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 001804 588 TDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFV 664 (1011)
Q Consensus 588 ~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~ 664 (1011)
+-|++.+.+..+.. .. +.+..+..+..|..+.-.- +.......-++.|..+|... ..-.+..++.++..+.
T Consensus 92 k~~i~~Vc~~~~s~--~l-ns~~Q~agLrlL~nLtv~~-~~~~~l~~~i~~ll~LL~~G--~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 92 KMYIPQVCEETVSS--PL-NSEVQLAGLRLLTNLTVTN-DYHHMLANYIPDLLSLLSSG--SEKTKVQVLKVLVNLS 162 (254)
T ss_pred HHHHHHHHHHHhcC--CC-CCHHHHHHHHHHHccCCCc-chhhhHHhhHHHHHHHHHcC--ChHHHHHHHHHHHHhc
Confidence 77877777766542 11 1122222334444332110 11111222344455677653 3345666676665543
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=39 Score=40.36 Aligned_cols=180 Identities=18% Similarity=0.114 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCC
Q 001804 482 LLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDK 561 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~ 561 (1011)
..+|.-+|.|.......-+ |.--..++.+-.++++++. +=-..|.-.+++| ..|+....++.-++.+|++.
T Consensus 86 ~~~krigylaa~qSf~~~t---dvlmL~tn~~rkdl~S~n~---ye~giAL~GLS~f---vTpdLARDLa~Dv~tLL~ss 156 (877)
T KOG1059|consen 86 FQQKRIGYLAASQSFHDDT---DVLMLTTNLLRKDLNSSNV---YEVGLALSGLSCI---VTPDLARDLADDVFTLLNSS 156 (877)
T ss_pred hHHHHHhHHHHHHhhcCCc---cHHHHHHHHHHHHhccCcc---chhhheecccccc---cCchhhHHHHHHHHHHHhcC
Confidence 4556667776665543322 3222233344456665543 2234455555555 45677778888888999988
Q ss_pred ChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHH
Q 001804 562 DLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQ 640 (1011)
Q Consensus 562 ~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~ 640 (1011)
-.-||-.|...+-..+-.+ ++.++|..|.+.+.| +..|.-. +-.+++.|+|-..+ =.+| -++.|.+.
T Consensus 157 kpYvRKkAIl~lykvFLkY---PeAlr~~FprL~EkL-------eDpDp~V-~SAAV~VICELArKnPkny-L~LAP~ff 224 (877)
T KOG1059|consen 157 KPYVRKKAILLLYKVFLKY---PEALRPCFPRLVEKL-------EDPDPSV-VSAAVSVICELARKNPQNY-LQLAPLFY 224 (877)
T ss_pred chHHHHHHHHHHHHHHHhh---hHhHhhhHHHHHHhc-------cCCCchH-HHHHHHHHHHHHhhCCccc-ccccHHHH
Confidence 8899999999887766655 678888887766553 3334322 45566666654443 2333 35777788
Q ss_pred HHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcC
Q 001804 641 KVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 641 ~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~ 687 (1011)
.+...+.+.+++. .++..++. +.+-.+.+..-++|-+-..++
T Consensus 225 kllttSsNNWmLI-KiiKLF~a----LtplEPRLgKKLieplt~li~ 266 (877)
T KOG1059|consen 225 KLLVTSSNNWVLI-KLLKLFAA----LTPLEPRLGKKLIEPITELME 266 (877)
T ss_pred HHHhccCCCeehH-HHHHHHhh----ccccCchhhhhhhhHHHHHHH
Confidence 8888887887762 34444433 333333455445544444443
No 86
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.01 E-value=43 Score=40.43 Aligned_cols=128 Identities=17% Similarity=0.251 Sum_probs=80.5
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc-CCcchHHHHHHHHHhhc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE-IKDDTKRAVYCALIKLL 558 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~-~~~~~~~~~~~~ll~~L 558 (1011)
++|..|--|+..+|++--. .+-..+..-+...+++.+| ++|+.+..++..+-.. ..-..-..+...+-.++
T Consensus 98 ~np~iR~lAlrtm~~l~v~-----~i~ey~~~Pl~~~l~d~~~---yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll 169 (734)
T KOG1061|consen 98 PNPLIRALALRTMGCLRVD-----KITEYLCDPLLKCLKDDDP---YVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLL 169 (734)
T ss_pred CCHHHHHHHhhceeeEeeh-----HHHHHHHHHHHHhccCCCh---hHHHHHHHHHHHhhcCChhhccccchhHHHHHHh
Confidence 6799998888888876532 1111233334556777777 9999999999888663 11112233455555566
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 001804 559 MDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLI 618 (1011)
Q Consensus 559 ~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l 618 (1011)
.|++..|-..|..||..+.+.-. .....-...+++..++..+++..+-. +..+++++
T Consensus 170 ~D~~p~VVAnAlaaL~eI~e~~~--~~~~~~l~~~~~~~lL~al~ec~EW~-qi~IL~~l 226 (734)
T KOG1061|consen 170 SDSNPMVVANALAALSEIHESHP--SVNLLELNPQLINKLLEALNECTEWG-QIFILDCL 226 (734)
T ss_pred cCCCchHHHHHHHHHHHHHHhCC--CCCcccccHHHHHHHHHHHHHhhhhh-HHHHHHHH
Confidence 68898888889999998877531 12333345677788888777764322 33344444
No 87
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=90.65 E-value=1.1 Score=40.43 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=68.7
Q ss_pred HHHHHHhhccCCC--hH--HHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhh
Q 001804 550 VYCALIKLLMDKD--LS--VRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHV 625 (1011)
Q Consensus 550 ~~~~ll~~L~d~~--~~--Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~ 625 (1011)
+++-+-+.+.|.+ ++ -|..|.+|+..+++-. +..+..++|+|+..|...++.- +-....+++-..++..+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~---g~~i~~a~pQI~acL~saL~~~---eL~~~al~~W~~~i~~L 85 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM---GKHISSALPQIMACLQSALEIP---ELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhC
Confidence 3444444455543 44 4889999999999854 5688889999999888887643 45556889999999999
Q ss_pred c-c-ccchHHHHHHHHHHHHh
Q 001804 626 S-E-VIPYANKLVQFFQKVWE 644 (1011)
Q Consensus 626 ~-e-i~p~~~~L~~~L~~lw~ 644 (1011)
+ + +.|..++++..+.+.|+
T Consensus 86 ~~~~l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 86 KEEELGPLLDQIFAAILPLWP 106 (107)
T ss_pred CHHHHHHHHHHHHHHHHHhcc
Confidence 9 4 99999999999999886
No 88
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.44 E-value=1.4 Score=40.01 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c-ccchHHHHHHH
Q 001804 561 KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E-VIPYANKLVQF 638 (1011)
Q Consensus 561 ~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e-i~p~~~~L~~~ 638 (1011)
.+..-|..|.+++..+++.. ++.+.++.|+|+..|-..+..- +-....+++-..++..++ + +.|+.+++...
T Consensus 27 ~~~~ek~~~l~si~~lI~~~---~~~i~~~~pQI~a~L~sal~~~---~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~ 100 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLG---GSHISSARPQIMACLQSALEIP---ELREEALSCWNCFIKTLDEEDLGPLLDQIFAI 100 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 56677899999999999843 6788889999988888777544 444457899999999999 4 99999999999
Q ss_pred HHHHHh
Q 001804 639 FQKVWE 644 (1011)
Q Consensus 639 L~~lw~ 644 (1011)
+.+.|+
T Consensus 101 l~~~~~ 106 (107)
T PF08064_consen 101 LLPLWD 106 (107)
T ss_pred HHHhcc
Confidence 999996
No 89
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.37 E-value=5.7 Score=39.32 Aligned_cols=119 Identities=14% Similarity=0.079 Sum_probs=91.2
Q ss_pred chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHh
Q 001804 545 DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGH 624 (1011)
Q Consensus 545 ~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~ 624 (1011)
........-+.++|++++..-|-.|+.-++..++..+ .+.|..+...-++.+++.+++.+...++...+.++..+.++
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4456667778888888888899999999999998752 56888899999999999999976666677788888888877
Q ss_pred hc-------c-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCC
Q 001804 625 VS-------E-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGY 669 (1011)
Q Consensus 625 ~~-------e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~ 669 (1011)
.. | .+|....+++.+.++-+. ......+++++..++.....
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPT 147 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCc
Confidence 76 2 256677777777766543 44556788888888886554
No 90
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.92 E-value=2.4 Score=46.11 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=99.4
Q ss_pred HHHHHHHHhhhcc-CCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccc---ccc--chHHHHHHHHHHH
Q 001804 529 RKVAIILGQWVSE-IKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERD---FTD--LLPICWDSCFKLV 602 (1011)
Q Consensus 529 ~ra~~~lg~~~~~-~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~---l~p--~l~~il~~L~~ll 602 (1011)
.-.+|++.+-.+. --.+..+-+.+.++.++.|.+..+|..+|..|..+++... ... +.- ..+-+-+.+..++
T Consensus 98 ~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~--~~~~~~L~~tGl~~v~~~al~~~L 175 (282)
T PF10521_consen 98 HVLSWIVLSQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVP--AAEWDILRRTGLFSVFEDALFPCL 175 (282)
T ss_pred HHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCC--hhhhHHHHHcChHHHHHHHHHHHh
Confidence 4568888833332 1135678899999999999999999999999999998753 222 221 1233333333333
Q ss_pred h-------HhhhhhhHHHHHHHHHHHHHhhc-c-ccc----hHHHHHHHHH-HHHhhcc-ccchHHHHHHHHHHHHHHHc
Q 001804 603 E-------EVQEFDSKVQVLNLISILIGHVS-E-VIP----YANKLVQFFQ-KVWEESS-GESLLQIQLLIALRNFVVAL 667 (1011)
Q Consensus 603 ~-------~~~~~e~~~~l~~~l~~ii~~~~-e-i~p----~~~~L~~~L~-~lw~~~~-~~~~~~~~~l~~l~~l~~a~ 667 (1011)
- +-++......++.|+-.++.... + -.+ +...+-..+. .++...+ ....++..+++.+..++..+
T Consensus 176 ~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~l 255 (282)
T PF10521_consen 176 YYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDEL 255 (282)
T ss_pred hcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHh
Confidence 3 12222223345777777766542 1 222 2333434233 3333222 25677788999999999999
Q ss_pred CCCCcchhhhHHHHHHhhcCC
Q 001804 668 GYQSHNCYSMLLPILRRGIDI 688 (1011)
Q Consensus 668 ~~~~~~~~~~~~Pvi~~~l~~ 688 (1011)
|-....+-..++|++...+.+
T Consensus 256 Gi~~~~hL~rii~~l~~~l~n 276 (282)
T PF10521_consen 256 GISSVKHLQRIIPVLSQILEN 276 (282)
T ss_pred ccHHHHHHHHHHHHHHHHhcC
Confidence 998777778899999888764
No 91
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.76 E-value=77 Score=41.39 Aligned_cols=112 Identities=16% Similarity=0.224 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHHHhhhHh---hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHh
Q 001804 480 PGLLLKDAAYGAAAYVYYE---LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIK 556 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~---l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~ 556 (1011)
+....|--|+.++..+.+. +-.+.+ +...+-..+.|++. .||-.|.-++|||+-. .+++..+.|+.+..
T Consensus 828 ~~ialRtkAlKclS~ive~Dp~vL~~~d----vq~~Vh~R~~Dssa---sVREAaldLvGrfvl~-~~e~~~qyY~~i~e 899 (1692)
T KOG1020|consen 828 NAIALRTKALKCLSMIVEADPSVLSRPD----VQEAVHGRLNDSSA---SVREAALDLVGRFVLS-IPELIFQYYDQIIE 899 (1692)
T ss_pred chHHHHHHHHHHHHHHHhcChHhhcCHH----HHHHHHHhhccchh---HHHHHHHHHHhhhhhc-cHHHHHHHHHHHHh
Confidence 3456777788888887754 222223 33334566777776 7999999999999752 46789999999999
Q ss_pred hccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhh
Q 001804 557 LLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQE 607 (1011)
Q Consensus 557 ~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~ 607 (1011)
...|....||-.+.+-++.+|+.. |-++.+...+.+++.++..
T Consensus 900 rIlDtgvsVRKRvIKIlrdic~e~--------pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 900 RILDTGVSVRKRVIKILRDICEET--------PDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred hcCCCchhHHHHHHHHHHHHHHhC--------CChhhHHHHHHHHHHHhcc
Confidence 999999999999999999988764 2234455555555555543
No 92
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.42 E-value=58 Score=39.49 Aligned_cols=271 Identities=14% Similarity=0.126 Sum_probs=150.7
Q ss_pred HHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc--CCcch----HHHHHHHHHhhc
Q 001804 485 KDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE--IKDDT----KRAVYCALIKLL 558 (1011)
Q Consensus 485 keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~--~~~~~----~~~~~~~ll~~L 558 (1011)
|.=+...+|.-... .-..+....+--.+++.+++++.. .+|-.++-++.--.+. ++++. ++.++..+..++
T Consensus 504 RRRVa~ilg~Wvsv-q~~~e~k~l~Y~a~lnLL~d~~D~--vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll 580 (978)
T KOG1993|consen 504 RRRVAWILGQWVSV-QQKLELKPLLYCAFLNLLQDQNDL--VVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLL 580 (978)
T ss_pred HHHHHHHHhhhhhe-echHhHHHHHHHHHHHhcCccccc--eeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHH
Confidence 33344455544331 112233333434456777776432 6888888888777774 56554 455566666666
Q ss_pred cC-CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhh-HHHHHHHHHHHHHhhc-cccchHHHH
Q 001804 559 MD-KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDS-KVQVLNLISILIGHVS-EVIPYANKL 635 (1011)
Q Consensus 559 ~d-~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~-~~~l~~~l~~ii~~~~-ei~p~~~~L 635 (1011)
.. ...--|+.-...+..+++.. .+.+.||...+++-+=.+=.+.++.+. +..++.++..+|...| .-.++..-+
T Consensus 581 ~~~~e~Dtk~~VL~~ls~lI~r~---~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL 657 (978)
T KOG1993|consen 581 KAVEECDTKTSVLNLLSTLIERV---SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFL 657 (978)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence 42 12222444456677788774 678889999998888777777754332 2357899999999999 333344433
Q ss_pred HHHHHHHHh-hccccchHHHHHHHHHHHHHHHcCCCC---cchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcC
Q 001804 636 VQFFQKVWE-ESSGESLLQIQLLIALRNFVVALGYQS---HNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHA 711 (1011)
Q Consensus 636 ~~~L~~lw~-~~~~~~~~~~~~l~~l~~l~~a~~~~~---~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~ 711 (1011)
.|.+.---+ ++.++-.+-..-++.-.+.++-...-. ..+.|++.|+|+.+.++ +..++.++++.+--.
T Consensus 658 ~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~--------L~t~l~Ii~sYilLd 729 (978)
T KOG1993|consen 658 YPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTEN--------LPTVLMIISSYILLD 729 (978)
T ss_pred HHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHhhc
Confidence 333221111 111222222222232222222222212 23457888888887753 345556665554332
Q ss_pred CC-C-CHHHHhhHhHHHHHHHh-chhhHHHHHHHHHHHHhcchhhhhhh--hHHHHHHHHHHhhc
Q 001804 712 PV-M-VPQLLAYFPCLVEIMER-SFDHLQVAINIIEGYIILGGTDFLNM--HASCVAKLLDLVVG 771 (1011)
Q Consensus 712 ~~-~-~~~l~~lf~~l~~~l~~-~~~~l~~~~~il~~yi~lg~~~~l~~--~~~~l~~~~~~~l~ 771 (1011)
.+ + ...-..+|..+-..+.+ ..+-+..++++++..+.-.+ +++. ..+.+..++..+..
T Consensus 730 ~~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~--il~~~~~~~~L~~lf~~I~~ 792 (978)
T KOG1993|consen 730 NTVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP--ILGSLLFSPLLSRLFLSIAE 792 (978)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH--HHHhhhcchhhHHHHHHHHh
Confidence 21 1 11223577777777776 57889999999999888766 4432 23444555555554
No 93
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=89.22 E-value=15 Score=40.57 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=78.5
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcC-CCChH---HHHHHHhh---Hhhhcc-----C
Q 001804 454 QLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSN-YLSFK---DWFNGALS---LDLSND-----H 521 (1011)
Q Consensus 454 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~-~~~~~---~~l~~~ll---~~l~~~-----~ 521 (1011)
+.+..-+.+.+.+.+. +.......|-+++.|+|.++..... .-+.. +.|...+. +..... .
T Consensus 124 ~ei~~~~~~~L~~~l~-------d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 124 EEIFEELKPVLKRILT-------DSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred HHHHHHHHHHHHHHHh-------CCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccC
Confidence 3445556666666664 1234467789999999998765322 12222 22332221 111111 0
Q ss_pred CCchhHHHHHHHHHHhhhccCCc----chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCc-cccccchHHHHH
Q 001804 522 PNMHIIHRKVAIILGQWVSEIKD----DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSE-RDFTDLLPICWD 596 (1011)
Q Consensus 522 ~~~~~lR~ra~~~lg~~~~~~~~----~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~-~~l~p~l~~il~ 596 (1011)
+..+-|...|+-.-|-....++. ......++.+..+|...|.-||++|..+|.-+.+...-.. +...+..+.+++
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~ 276 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLE 276 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHH
Confidence 11123544444333333344443 2345567788888888899999999999998876543112 223455555655
Q ss_pred HHHHHHhH
Q 001804 597 SCFKLVEE 604 (1011)
Q Consensus 597 ~L~~ll~~ 604 (1011)
.+-.|..+
T Consensus 277 ~l~~La~d 284 (309)
T PF05004_consen 277 QLRELATD 284 (309)
T ss_pred HHHHHHHh
Confidence 55555544
No 94
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.73 E-value=66 Score=39.22 Aligned_cols=126 Identities=21% Similarity=0.300 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhhc-cccchHHHHHHHH--HHHHhhccccc-hHHHHHHHHHHHHHHHcCCCC---cchhhhHHHHHHhh
Q 001804 613 QVLNLISILIGHVS-EVIPYANKLVQFF--QKVWEESSGES-LLQIQLLIALRNFVVALGYQS---HNCYSMLLPILRRG 685 (1011)
Q Consensus 613 ~l~~~l~~ii~~~~-ei~p~~~~L~~~L--~~lw~~~~~~~-~~~~~~l~~l~~l~~a~~~~~---~~~~~~~~Pvi~~~ 685 (1011)
.++..++.+++..+ .+-+....+.|+| +.+|...++=+ +++ +++++-. .|+.. ....+.++-+++..
T Consensus 658 YvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvr--Ll~aflk----~g~~~~~~~~~l~~iLGifqkL 731 (960)
T KOG1992|consen 658 YVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVR--LLQAFLK----TGSQIVEAADKLSGILGIFQKL 731 (960)
T ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHH--HHHHHHh----cCchhhcccccchhHHHHHHHH
Confidence 47788888999888 4766777888877 56999876532 222 2332221 22211 12234566777777
Q ss_pred cCCCCCCcchhhhhHHHHHHHHHhcCCC--CCHHHHhhHhHHHHHHHhc--hhhHHHHHHHHHHHHhc
Q 001804 686 IDINSPDELNLLEDSMLLWEATISHAPV--MVPQLLAYFPCLVEIMERS--FDHLQVAINIIEGYIIL 749 (1011)
Q Consensus 686 l~~~~~~~~~l~e~~l~L~~~l~~~~~~--~~~~l~~lf~~l~~~l~~~--~~~l~~~~~il~~yi~l 749 (1011)
+.... .-..|+.|+..++.+.+. +.|.+.++|-.++.=++++ ..++..+...+..|...
T Consensus 732 iaSka-----~Dh~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~ik 794 (960)
T KOG1992|consen 732 IASKA-----NDHHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFTIK 794 (960)
T ss_pred hcCcc-----cchhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH
Confidence 75322 235789999999998764 6888999999988888863 56788777777777665
No 95
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.50 E-value=10 Score=40.38 Aligned_cols=176 Identities=14% Similarity=0.113 Sum_probs=101.6
Q ss_pred chhHHHHHHHHHHHhhhHhhc-----CCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccC-CcchHHHHHHH
Q 001804 480 PGLLLKDAAYGAAAYVYYELS-----NYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEI-KDDTKRAVYCA 553 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~-----~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~-~~~~~~~~~~~ 553 (1011)
.+...++.++.++|..+..-. .+.. -.+.+...+.+++| -+|.+|+|++...+... ...........
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~G----gi~lI~~lL~~p~~---~vr~~AL~aL~Nls~~~en~~~Ik~~i~~ 97 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDLG----GISLIGSLLNDPNP---SVREKALNALNNLSVNDENQEQIKMYIPQ 97 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHcC----CHHHHHHHcCCCCh---HHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 456889999999998764311 1111 12334566677777 69999999999887742 12222222333
Q ss_pred HHhhcc--CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccc-
Q 001804 554 LIKLLM--DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIP- 630 (1011)
Q Consensus 554 ll~~L~--d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p- 630 (1011)
+...+. .-|-.||.+|.++|.++.-..+ ....+.+| +..++.++..- ...++.+++.++..+.+.-. .++
T Consensus 98 Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l~~~----i~~ll~LL~~G-~~~~k~~vLk~L~nLS~np~-~~~~ 170 (254)
T PF04826_consen 98 VCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHMLANY----IPDLLSLLSSG-SEKTKVQVLKVLVNLSENPD-MTRE 170 (254)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhHHhh----HHHHHHHHHcC-ChHHHHHHHHHHHHhccCHH-HHHH
Confidence 333222 2377899999999999842211 13345455 44556677664 33567677777766654322 112
Q ss_pred -hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC
Q 001804 631 -YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 631 -~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~ 670 (1011)
...+....|..+.+..++...+ ..++..+..|-..+++.
T Consensus 171 Ll~~q~~~~~~~Lf~~~~~~~~l-~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 171 LLSAQVLSSFLSLFNSSESKENL-LRVLTFFENINENIKKE 210 (254)
T ss_pred HHhccchhHHHHHHccCCccHHH-HHHHHHHHHHHHhhCcc
Confidence 1223444555666655443322 23677777777777765
No 96
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.42 E-value=6 Score=47.79 Aligned_cols=138 Identities=17% Similarity=0.085 Sum_probs=92.4
Q ss_pred cHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhc
Q 001804 440 CAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSN 519 (1011)
Q Consensus 440 ~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~ 519 (1011)
.+-..+..|+..|++.++|-+.+.+.+.... + .++ .-.+.=||.+..+.+.++-..++.+ .+.+.++....+
T Consensus 787 naI~gv~~Lcevy~e~il~dL~e~Y~s~k~k-~--~~d--~~lkVGEai~k~~qa~Gel~~~y~~---~Li~tfl~gvre 858 (982)
T KOG4653|consen 787 NAIRGVVSLCEVYPEDILPDLSEEYLSEKKK-L--QTD--YRLKVGEAILKVAQALGELVFKYKA---VLINTFLSGVRE 858 (982)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcccC-C--Ccc--ceehHHHHHHHHHHHhccHHHHHHH---HHHHHHHHhcCC
Confidence 4445566778889999988877654433221 1 011 1234446666655555544433332 366667778887
Q ss_pred cCCCchhHHHHHHHHHHhhhccCC---cchHHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccch
Q 001804 520 DHPNMHIIHRKVAIILGQWVSEIK---DDTKRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLL 591 (1011)
Q Consensus 520 ~~~~~~~lR~ra~~~lg~~~~~~~---~~~~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l 591 (1011)
|+. ..|..+|-.+|+.+.... .+.+..++..++.... |....||-+|+.-+..+.... +..+.|++
T Consensus 859 pd~---~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~t---g~dlLpil 928 (982)
T KOG4653|consen 859 PDH---EFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGT---GEDLLPIL 928 (982)
T ss_pred chH---HHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhcc---chhhHHHH
Confidence 765 689999999999987421 3478888888888876 888999999999999888764 45666644
No 97
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=88.38 E-value=6.4 Score=39.54 Aligned_cols=91 Identities=20% Similarity=0.191 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHh
Q 001804 526 IIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEV 605 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 605 (1011)
.+|.-++-++|-++-.. +....+..+.+..+|.|++..||.+|...|..++.. .+...=+.++..++.++.+.
T Consensus 3 ~vR~n~i~~l~DL~~r~-~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~------d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRY-PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE------DMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred HHHHHHHHHHHHHHHhC-cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc------CceeehhhhhHHHHHHHcCC
Confidence 79999999999887755 356778888889999999999999999999999864 22223355566666766543
Q ss_pred hhhhhHHHHHHHHHHHHHh
Q 001804 606 QEFDSKVQVLNLISILIGH 624 (1011)
Q Consensus 606 ~~~e~~~~l~~~l~~ii~~ 624 (1011)
. .+.+.....++..+..+
T Consensus 76 ~-~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 N-PEIRSLARSFFSELLKK 93 (178)
T ss_pred C-HHHHHHHHHHHHHHHHh
Confidence 2 23333344444444444
No 98
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.92 E-value=10 Score=41.43 Aligned_cols=142 Identities=18% Similarity=0.169 Sum_probs=86.4
Q ss_pred CchhHHHHHHHHHHHhhhHhhcCCCChHH--HHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccC--Cc-chH-HHHHH
Q 001804 479 TPGLLLKDAAYGAAAYVYYELSNYLSFKD--WFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEI--KD-DTK-RAVYC 552 (1011)
Q Consensus 479 ~~~~~~keA~l~alg~~a~~l~~~~~~~~--~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~--~~-~~~-~~~~~ 552 (1011)
..+...|++++--+--..+.+....|+-+ .+.+ ++..++++++ -||.+|+|++|..+..= .+ ... ...++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~-ll~~l~~~~~---~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVP-LLGYLENSDA---ELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHH-HHHHhcCCcH---HHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 34578899998888877776644444321 1222 3346777766 69999999999988731 11 111 11455
Q ss_pred HHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHh-hhhhhHHHHHHHHHHHHHhhc
Q 001804 553 ALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEV-QEFDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 553 ~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~-~~~e~~~~l~~~l~~ii~~~~ 626 (1011)
.++..+. |.+.-||..|-.|+.+++.+..-....|.+.=. .+.|..+++.- .....+..++..++.+++...
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G--~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG--YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC--HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 5555564 677889999999999999875322223332211 45555555552 122345556677777765544
No 99
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=87.08 E-value=1.9 Score=55.21 Aligned_cols=79 Identities=25% Similarity=0.154 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
+++..|.+++.++|.+... + .....++..+.++++ .||..|++.+|+... +..++.++.+|.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~--~------~~~~~l~~aL~d~d~---~VR~~Aa~aL~~l~~-------~~a~~~L~~~L~ 848 (897)
T PRK13800 787 PDPLVRAAALAALAELGCP--P------DDVAAATAALRASAW---QVRQGAARALAGAAA-------DVAVPALVEALT 848 (897)
T ss_pred CCHHHHHHHHHHHHhcCCc--c------hhHHHHHHHhcCCCh---HHHHHHHHHHHhccc-------cchHHHHHHHhc
Confidence 4578888888888876532 0 122346667777766 788888888887532 224477777788
Q ss_pred CCChHHHHHHHHHHHHh
Q 001804 560 DKDLSVRLAACRSLCSH 576 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~ 576 (1011)
|++..||..|+.||..+
T Consensus 849 D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 849 DPHLDVRKAAVLALTRW 865 (897)
T ss_pred CCCHHHHHHHHHHHhcc
Confidence 88888888888888876
No 100
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=86.76 E-value=6 Score=34.73 Aligned_cols=73 Identities=14% Similarity=0.053 Sum_probs=50.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc
Q 001804 549 AVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 549 ~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ 626 (1011)
..|+-.+..+.|+.+|||..|..-|+.++..-. .-...++.++.-++..+++-++ -.-+.++.++..+++.+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~----~~~~~~~~il~l~l~~L~d~Ds-yVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS----EPVIDIPKILDLFLSQLKDEDS-YVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC----cchhhHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHCh
Confidence 356777888899999999999999999998742 2334567777777776665421 223334566666666555
No 101
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=86.74 E-value=15 Score=41.62 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=101.3
Q ss_pred hHHHHHHHH-HHHhhhHhhcCCCChHHHHHHHh---hHhhhc-cCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHh
Q 001804 482 LLLKDAAYG-AAAYVYYELSNYLSFKDWFNGAL---SLDLSN-DHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIK 556 (1011)
Q Consensus 482 ~~~keA~l~-alg~~a~~l~~~~~~~~~l~~~l---l~~l~~-~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~ 556 (1011)
.-.|++|+. ..+..+++=... .++.|...| +.-+.+ .++ ..|.-|.-+++..+...+..++...--++..
T Consensus 301 a~~~k~alsel~~m~~e~sfsv--Weq~f~~iL~~l~EvL~d~~~~---~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K 375 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSV--WEQHFAEILLLLLEVLSDSEDE---IIKKLALRVLREMLTNQPARLFDSTEIAICK 375 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhH--HHHHHHHHHHHHHHHHccchhh---HHHHHHHHHHHHHHHhchHhhhchHHHHHHH
Confidence 344555544 666666551110 122333333 344455 333 7888899999988875433333333333333
Q ss_pred hc---cC-CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c-ccc
Q 001804 557 LL---MD-KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E-VIP 630 (1011)
Q Consensus 557 ~L---~d-~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e-i~p 630 (1011)
.| .| .+.++|+++-.|++.+..+.++ ..+..+..++...++ .....++..+..+++++. | +.+
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~----------~~I~~i~~~Ilt~D~-~~~~~~iKm~Tkl~e~l~~EeL~~ 444 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPL----------QCIVNISPLILTADE-PRAVAVIKMLTKLFERLSAEELLN 444 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCch----------hHHHHHhhHHhcCcc-hHHHHHHHHHHHHHhhcCHHHHHH
Confidence 33 34 5678888877777776655321 123333333333322 334457788999999999 5 888
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCC
Q 001804 631 YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGY 669 (1011)
Q Consensus 631 ~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~ 669 (1011)
..+.|+|.+.+-+++. ...+|-.++=||..++.-+|.
T Consensus 445 ll~diaP~~iqay~S~--SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 445 LLPDIAPCVIQAYDST--SSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred hhhhhhhHHHHHhcCc--hHHhhhhHHHhHHHHHHHHhH
Confidence 8889999888766543 456676777888888888884
No 102
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=86.28 E-value=3 Score=41.49 Aligned_cols=91 Identities=23% Similarity=0.345 Sum_probs=62.0
Q ss_pred ccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHh-hcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGH-VSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNF 663 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~-~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l 663 (1011)
++.+||+-.++.|. |.++.- .......+..++++ .++ +.|...+|+.+|..-.+.. +.-+.+.+|.+|..+
T Consensus 35 dy~~~Lpif~dGL~----Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr--~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 35 DYHHYLPIFFDGLR----ETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR--DPEVFCATLKALQQL 107 (183)
T ss_pred chhhHHHHHHhhhh----ccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHH
Confidence 56688888877754 443322 34466777788888 444 8999999999998766543 345566789999998
Q ss_pred HHH---cCCCCcchhhhHHHHHH
Q 001804 664 VVA---LGYQSHNCYSMLLPILR 683 (1011)
Q Consensus 664 ~~a---~~~~~~~~~~~~~Pvi~ 683 (1011)
+.+ +|+.=..++..++|++.
T Consensus 108 v~~~~~vG~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 108 VTSSDMVGEALVPYYRQLLPVLN 130 (183)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHH
Confidence 655 44432345667788887
No 103
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=86.27 E-value=0.43 Score=50.77 Aligned_cols=135 Identities=13% Similarity=0.113 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhhHhhc--CCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc-C---CcchHHHHHHHHHh
Q 001804 483 LLKDAAYGAAAYVYYELS--NYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE-I---KDDTKRAVYCALIK 556 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~--~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~-~---~~~~~~~~~~~ll~ 556 (1011)
...--+++++|.+..+-. ..+=.+--.-+.+.+.|.++.. -+|.-|||+++....- . ..-.-..+.+.++|
T Consensus 300 ~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke---~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ 376 (526)
T COG5064 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKE---NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIH 376 (526)
T ss_pred cccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhh---hhhhhhheeecccccCCHHHHHHHHhcccchHHHH
Confidence 445667888998765511 1110000122345556777765 3899999999987542 1 11112335667888
Q ss_pred hccCCChHHHHHHHHHHHHhhhhcCCCccccccchH--HHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 001804 557 LLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLP--ICWDSCFKLVEEVQEFDSKVQVLNLISILI 622 (1011)
Q Consensus 557 ~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~--~il~~L~~ll~~~~~~e~~~~l~~~l~~ii 622 (1011)
+|...+...|-.||.|+.+......-.+ ++.-|+- ..+.-|+.++.-....-..+ .+++++.+.
T Consensus 377 lls~ae~k~kKEACWAisNatsgg~~~P-D~iryLv~qG~IkpLc~~L~~~dNkiiev-~LD~~eniL 442 (526)
T COG5064 377 LLSSAEYKIKKEACWAISNATSGGLNRP-DIIRYLVSQGFIKPLCDLLDVVDNKIIEV-ALDAIENIL 442 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCc-hHHHHHHHccchhHHHHHHhccCccchhh-hHHHHHHHH
Confidence 8988899999999999999876543223 3333442 35566666766553322222 466666665
No 104
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.77 E-value=1.2e+02 Score=38.87 Aligned_cols=334 Identities=13% Similarity=0.130 Sum_probs=164.2
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhc------CCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 001804 546 TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDA------NFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLIS 619 (1011)
Q Consensus 546 ~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~------~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~ 619 (1011)
.+..+.+.+...+.-+. -.|.+-|.||+.+++.. .-..+.+..|..+.|..+|+...+..... + .++.+..
T Consensus 515 sF~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~-~-~~l~~~~ 591 (1176)
T KOG1248|consen 515 SFTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAG-R-KILASRS 591 (1176)
T ss_pred HHHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccc-c-ccHHHHH
Confidence 37778888888776433 67888899999998753 11234577788889999998887653322 1 3455555
Q ss_pred HHHHhhc-c-ccchHHHHHHHHHHHHh----hccc--cchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCC
Q 001804 620 ILIGHVS-E-VIPYANKLVQFFQKVWE----ESSG--ESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSP 691 (1011)
Q Consensus 620 ~ii~~~~-e-i~p~~~~L~~~L~~lw~----~~~~--~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~ 691 (1011)
+.++... + +.--...+...|..-.+ ..++ ......++|+.+..++.+...++..-.-.+.|-...+-.
T Consensus 592 ~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~---- 667 (1176)
T KOG1248|consen 592 TVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSS---- 667 (1176)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhcccc----
Confidence 5554444 3 22222334443433222 1111 234455677776666666555421111134444444321
Q ss_pred CcchhhhhHHHHHHHHHhcCCC----CCHHHHhhHhHHHHHHHhchh-hHHHHHHHHHHHHhcchhhhhhhhHHHHHHHH
Q 001804 692 DELNLLEDSMLLWEATISHAPV----MVPQLLAYFPCLVEIMERSFD-HLQVAINIIEGYIILGGTDFLNMHASCVAKLL 766 (1011)
Q Consensus 692 ~~~~l~e~~l~L~~~l~~~~~~----~~~~l~~lf~~l~~~l~~~~~-~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~ 766 (1011)
.-.---+++++..++.. ++ ....+-.+|..+.+.++.... .-..-+.+|..-+-+-+..+..-+...+..++
T Consensus 668 --~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvI 744 (1176)
T KOG1248|consen 668 --TKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVI 744 (1176)
T ss_pred --HHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 12335677788877766 32 222334577777777776332 23334444544333333222211222333333
Q ss_pred HHhhcCccchhHhhHHHHHHHHH--HhCCCCc----hhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH-HHHHHHHHHh
Q 001804 767 DLVVGNVNDKGLLIILPVIDMLI--QCFPIQV----PPLISCSLQKLIVICLSGGDDHEPSKTAVKASS-AAILARILVM 839 (1011)
Q Consensus 767 ~~~l~~~~~~~~~~~~~l~e~ll--~~~~~~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~vl~rl~~~ 839 (1011)
-.. .+.++...-.+..++-.+. +..-+.+ ...++.++..+..++. | + .+ .+..+ +..+.+++..
T Consensus 745 L~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~-g---d---~~-~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 745 LSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLV-G---D---ST-RVVASDIVAITHILQE 815 (1176)
T ss_pred Hhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhc-c---c---HH-HHHHHHHHHHHHHHHH
Confidence 333 3333333333333333333 3321111 2344444444443321 2 1 11 22222 3334443321
Q ss_pred ChHHHHHHhccchhhHHHhhcCCcchHHHHHHHHHHHHHcCCCCCch-hhHHHHHHHHHHhccCchHHH--HHHHHHHHH
Q 001804 840 NANYLAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMRLPQVL--DKLDQILSV 916 (1011)
Q Consensus 840 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~l--~~l~~i~~~ 916 (1011)
+-.++ .+..+..+++.-+..+. ++. +..-+++|+.+.+-..-|... ..++.++..
T Consensus 816 ----~~~~l----------------d~~~l~~li~~V~~~L~--s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 816 ----FKNIL----------------DDETLEKLISMVCLYLA--SNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred ----Hhccc----------------cHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 11111 13356666666554322 333 556677888887777677654 666777776
Q ss_pred HHHH
Q 001804 917 CTSV 920 (1011)
Q Consensus 917 ~~~~ 920 (1011)
+...
T Consensus 874 ll~l 877 (1176)
T KOG1248|consen 874 LLAL 877 (1176)
T ss_pred HHHH
Confidence 5553
No 105
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.74 E-value=7 Score=42.41 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=86.4
Q ss_pred HHhhHhhhccCCCchhHHHHHHHHHHhhhcc-C----CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcc
Q 001804 511 GALSLDLSNDHPNMHIIHRKVAIILGQWVSE-I----KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSER 585 (1011)
Q Consensus 511 ~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~-~----~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~ 585 (1011)
++|+..+++.++ =+|.++|-.+|..+-. . =.+.-+.+.+.++.+|.|.+..|+..|..||+++..+-++..+
T Consensus 211 pvLVsll~s~d~---dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~e 287 (550)
T KOG4224|consen 211 PVLVSLLKSGDL---DVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQRE 287 (550)
T ss_pred hhhhhhhccCCh---hHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhH
Confidence 346777787777 5999999999988642 1 1234567889999999999999999999999999866432221
Q ss_pred ccccchHHHHHHHHHHHhHhhhhhhHHHHHH---HHHHHHHhhc-cccchHHH-HHHHHHHHHhhccccchHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLN---LISILIGHVS-EVIPYANK-LVQFFQKVWEESSGESLLQIQLLIAL 660 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~---~l~~ii~~~~-ei~p~~~~-L~~~L~~lw~~~~~~~~~~~~~l~~l 660 (1011)
... ..-+..+++|++.- -.+. ++. ||..+.-.-+ + .+.+++ .+.+|..+.. ..|..-.++...+++
T Consensus 288 iv~---ag~lP~lv~Llqs~---~~pl-ilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~-~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 288 IVE---AGSLPLLVELLQSP---MGPL-ILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLR-AGDNEEIQCHAVSTL 358 (550)
T ss_pred HHh---cCCchHHHHHHhCc---chhH-HHHHHHHHhhcccccCcc-cceecccchhHHHHHHh-cCCchhhhhhHHHHH
Confidence 111 11233455555432 1122 333 3322222212 2 111111 2223333332 234444677788999
Q ss_pred HHHHHHcCCC
Q 001804 661 RNFVVALGYQ 670 (1011)
Q Consensus 661 ~~l~~a~~~~ 670 (1011)
..++.+.+.+
T Consensus 359 rnLAasse~n 368 (550)
T KOG4224|consen 359 RNLAASSEHN 368 (550)
T ss_pred HHHhhhhhhh
Confidence 8888876654
No 106
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.35 E-value=5.8 Score=34.82 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=55.2
Q ss_pred hhHhhhccCCCchhHHHHHHHHHHhhhccC--CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhc
Q 001804 513 LSLDLSNDHPNMHIIHRKVAIILGQWVSEI--KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDA 580 (1011)
Q Consensus 513 ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~--~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~ 580 (1011)
.+.+++||.+ -+|+.+...+++....- .....+.++..++..|.|+|.-|-+.|..+|..+++..
T Consensus 8 al~~L~dp~~---PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~ 74 (92)
T PF10363_consen 8 ALSDLNDPLP---PVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH 74 (92)
T ss_pred HHHHccCCCc---chHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC
Confidence 3557788766 49999999999999843 44567899999999999999999999999999999864
No 107
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.03 E-value=7.5 Score=42.51 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=97.0
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-cc
Q 001804 551 YCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VI 629 (1011)
Q Consensus 551 ~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~ 629 (1011)
+..++..+.+.+.-||..|+..+.+.+.+-++..+.+..+- .++.|+..+..-...+.+..++.+++.+|..... +.
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~ 203 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELG--ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQD 203 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHH
Confidence 33445577888999999999999999877543333332222 5777777777655556667789999999987762 22
Q ss_pred chHH-HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHH
Q 001804 630 PYAN-KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATI 708 (1011)
Q Consensus 630 p~~~-~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~ 708 (1011)
.|.. .=...|..+.++.+.+..++..++..++.++.+...+.....+..+|.....+.. ....+.-+.++.-...++
T Consensus 204 ~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~--~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 204 EFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLIS--SLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhh--ccchhhhHHHHHHHHHHH
Confidence 2110 0034455666665567778888899999999987766544444444444433321 122345556555555444
Q ss_pred h
Q 001804 709 S 709 (1011)
Q Consensus 709 ~ 709 (1011)
.
T Consensus 282 ~ 282 (342)
T KOG2160|consen 282 S 282 (342)
T ss_pred H
Confidence 4
No 108
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=84.86 E-value=17 Score=35.71 Aligned_cols=72 Identities=13% Similarity=0.295 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 001804 592 PICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVV 665 (1011)
Q Consensus 592 ~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~ 665 (1011)
.-.+..|++.+++-....-...++.++-.|.+..| +..||..+++|.+.....+.++ .++..++.-++.++.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~--~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD--SLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH--HHHHHHHHHHHHHHH
Confidence 44677888888776444434457888888888888 5789999999999887765544 455556666666554
No 109
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.68 E-value=1.2e+02 Score=38.24 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh----cc-CCHHHHhHHHHHHHHHHH
Q 001804 89 EEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQL----QA-ADVLTSHRIFMILFRTLK 160 (1011)
Q Consensus 89 e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l----~s-~~~~~~~~al~~L~~v~k 160 (1011)
+--+.+-+.|++++.+.+..||-.+|--+++|+... | ++|..++++.+ .- .+....|||+++|..+-+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rl-p---~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRL-P---PELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccC-c---HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 345678888889999999999999999999999886 4 56666665543 22 246678999988775543
No 110
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.63 E-value=6 Score=50.69 Aligned_cols=81 Identities=15% Similarity=0.047 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
+++..|.++..++|.+...-.. -.+.|...++|+++ .+|..|+..+|++... ..+...++..|.
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~-------~~~~L~~ll~D~d~---~VR~aA~~aLg~~g~~------~~~~~~l~~aL~ 817 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAP-------AGDAVRALTGDPDP---LVRAAALAALAELGCP------PDDVAAATAALR 817 (897)
T ss_pred CCHHHHHHHHHHHHHhccccch-------hHHHHHHHhcCCCH---HHHHHHHHHHHhcCCc------chhHHHHHHHhc
Confidence 4678899999999987653111 12345666788876 8999999999998542 123355777888
Q ss_pred CCChHHHHHHHHHHHHh
Q 001804 560 DKDLSVRLAACRSLCSH 576 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~ 576 (1011)
|++..||..|+.||..+
T Consensus 818 d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 818 ASAWQVRQGAARALAGA 834 (897)
T ss_pred CCChHHHHHHHHHHHhc
Confidence 99999999999999865
No 111
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.22 E-value=21 Score=40.40 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=94.8
Q ss_pred chhHHHHHHHHHHHhhhHh-hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhc
Q 001804 480 PGLLLKDAAYGAAAYVYYE-LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLL 558 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~-l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L 558 (1011)
.+-..|.=|+..++-+... -..-+|....-...++..-.+.++. .+|..+=-++--.++..+..-...+-+.++.
T Consensus 342 ~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~--v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt-- 417 (516)
T KOG2956|consen 342 EDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDE--VMRVAEEDCLTTLASHLPLQCIVNISPLILT-- 417 (516)
T ss_pred hhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchh--HHHHHHHHHHHHHHhhCchhHHHHHhhHHhc--
Confidence 4446677788888876643 1111233333444456667777663 4554433322222223332223333333333
Q ss_pred cCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c-ccchHHHHH
Q 001804 559 MDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E-VIPYANKLV 636 (1011)
Q Consensus 559 ~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e-i~p~~~~L~ 636 (1011)
.|-+.-+.+...+..+++.. ..+.+.+.++++...+++..+..+..-.|. ++-||-.++.++| + +.||..+|.
T Consensus 418 --~D~~~~~~~iKm~Tkl~e~l--~~EeL~~ll~diaP~~iqay~S~SS~VRKt-aVfCLVamv~~vG~~~mePhL~~Lt 492 (516)
T KOG2956|consen 418 --ADEPRAVAVIKMLTKLFERL--SAEELLNLLPDIAPCVIQAYDSTSSTVRKT-AVFCLVAMVNRVGMEEMEPHLEQLT 492 (516)
T ss_pred --CcchHHHHHHHHHHHHHhhc--CHHHHHHhhhhhhhHHHHHhcCchHHhhhh-HHHhHHHHHHHHhHHhhhhHhhhcc
Confidence 45555666777888888876 578999999999999999988876544444 7889999999999 6 999998775
Q ss_pred HH
Q 001804 637 QF 638 (1011)
Q Consensus 637 ~~ 638 (1011)
..
T Consensus 493 ~s 494 (516)
T KOG2956|consen 493 SS 494 (516)
T ss_pred HH
Confidence 53
No 112
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.86 E-value=1.4 Score=29.85 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=23.5
Q ss_pred HHHhhHhhhccCCCchhHHHHHHHHHHhhhcc
Q 001804 510 NGALSLDLSNDHPNMHIIHRKVAIILGQWVSE 541 (1011)
Q Consensus 510 ~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~ 541 (1011)
.+.++..++|+++ -||..|++++|++++.
T Consensus 2 lp~l~~~l~D~~~---~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSP---EVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSH---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCH---HHHHHHHHHHHHHHhh
Confidence 4667888899988 7999999999998763
No 113
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=83.79 E-value=7.6 Score=39.61 Aligned_cols=94 Identities=21% Similarity=0.240 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCC---------------cch
Q 001804 611 KVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQS---------------HNC 674 (1011)
Q Consensus 611 ~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~---------------~~~ 674 (1011)
-..++.+++++.+++|+ -.|+...++..|.++-++.+ ...+..+=+|+++-+.++|++. ..-
T Consensus 17 w~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~--f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~~ 94 (198)
T PF08161_consen 17 WPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESED--FSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQPG 94 (198)
T ss_pred HHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCC--cchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCcc
Confidence 33489999999999995 67888888888877655432 4567778899999999999741 011
Q ss_pred hhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHH
Q 001804 675 YSMLLPILRRGIDINSPDELNLLEDSMLLWEATI 708 (1011)
Q Consensus 675 ~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~ 708 (1011)
...++|+++..+.+. ...+|.+.-+-|-..+-
T Consensus 95 raWLLPlLr~~i~~~--~L~fF~~~~lPla~~~~ 126 (198)
T PF08161_consen 95 RAWLLPLLRDHIRNA--SLSFFVEEFLPLARRLR 126 (198)
T ss_pred cchhHHHHHHhccCC--ChHHHHHHHHHHHHHHH
Confidence 246889998887653 33466666665555443
No 114
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=83.76 E-value=10 Score=46.19 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhhHh-hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc---CCcchHHHHHHHHHhhcc
Q 001804 484 LKDAAYGAAAYVYYE-LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE---IKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 484 ~keA~l~alg~~a~~-l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~---~~~~~~~~~~~~ll~~L~ 559 (1011)
.-+|.=+.++.+-.. +.+.+ +.+.|.|++.+.-+++ .+|--+.-++.-.... +.++....+++.++.+=.
T Consensus 887 yl~~LshVl~~vP~~vllp~~---~~LlPLLLq~Ls~~D~---~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~ 960 (1030)
T KOG1967|consen 887 YLEALSHVLTNVPKQVLLPQF---PMLLPLLLQALSMPDV---IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSS 960 (1030)
T ss_pred HHHHHHHHHhcCCHHhhccch---hhHHHHHHHhcCCCcc---chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCC
Confidence 344444444444322 32322 3366777888888888 7888888888777653 446778888888888766
Q ss_pred CCC---hHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHh
Q 001804 560 DKD---LSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEV 605 (1011)
Q Consensus 560 d~~---~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 605 (1011)
|++ .+||+.|..+|..+.+.. ....+.||-+..++.|.+.++.-
T Consensus 961 ~~~n~~~~VR~~ALqcL~aL~~~~--P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 961 DNDNNMMVVREDALQCLNALTRRL--PTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred CCCcchhHHHHHHHHHHHHHhccC--CCcccccccHHHHHHhhhccCcH
Confidence 554 899999999999988744 36789999999999999988754
No 115
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=82.63 E-value=7.6 Score=47.64 Aligned_cols=132 Identities=14% Similarity=0.050 Sum_probs=91.6
Q ss_pred ccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhh
Q 001804 435 EKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALS 514 (1011)
Q Consensus 435 ~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll 514 (1011)
|++|..++..+-.++..||..- .....+.+.+.. ...++|+.|-+.+.++..+++.+.+.+ +...|.+.+.
T Consensus 532 ~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~------~~q~~y~~R~t~l~si~~la~v~g~ei-~~~~Llp~~~ 602 (759)
T KOG0211|consen 532 YSIREAAARNLPALVETFGSEW--ARLEEIPKLLAM------DLQDNYLVRMTTLFSIHELAEVLGQEI-TCEDLLPVFL 602 (759)
T ss_pred HHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHH------hcCcccchhhHHHHHHHHHHHHhccHH-HHHHHhHHHH
Confidence 5788888888888888887211 111112222221 112369999999999999988876543 2233455555
Q ss_pred HhhhccCCCchhHHHHHHHHHHhhhccCCcch-HHHHHHHHHhhccCCChHHHHHHHHHHHHhhh
Q 001804 515 LDLSNDHPNMHIIHRKVAIILGQWVSEIKDDT-KRAVYCALIKLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 515 ~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~-~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
....|+.| -||-.+|..+-.+...+..+. ...+++++..+-.|++.-||..|..|+..+..
T Consensus 603 ~l~~D~va---nVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 603 DLVKDPVA---NVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HhccCCch---hhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 56678887 599999999999998765544 56677777777779999999999988887644
No 116
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.91 E-value=1.1e+02 Score=35.49 Aligned_cols=365 Identities=15% Similarity=0.157 Sum_probs=176.3
Q ss_pred hhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc-----CCChHHHHHHHHHHHHhhhhcCCCc--c
Q 001804 513 LSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM-----DKDLSVRLAACRSLCSHIEDANFSE--R 585 (1011)
Q Consensus 513 ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~-----d~~~~Vr~~A~~aL~~~~~~~~~~~--~ 585 (1011)
++..|.+..++...-..|+.-.+++++.. ++.+..+...+++.+. ..+...-..++.++..+++...-.. .
T Consensus 4 ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~ 81 (415)
T PF12460_consen 4 LLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFE 81 (415)
T ss_pred HHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccc
Confidence 33444444332214567788888888763 3445555555555553 1244455566777777766542111 2
Q ss_pred ccccchHH-HHHHHHHHHhHhhhhhhH--HHHHHHHHHHHHhhc-cccc-hHHHHHHHHHHHHhhc--------ccc--c
Q 001804 586 DFTDLLPI-CWDSCFKLVEEVQEFDSK--VQVLNLISILIGHVS-EVIP-YANKLVQFFQKVWEES--------SGE--S 650 (1011)
Q Consensus 586 ~l~p~l~~-il~~L~~ll~~~~~~e~~--~~l~~~l~~ii~~~~-ei~p-~~~~L~~~L~~lw~~~--------~~~--~ 650 (1011)
...-|... ++..++++.-.....+.. ..+++.++.++...- .+.+ --..++..+..+.-.. +.. .
T Consensus 82 ~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~ 161 (415)
T PF12460_consen 82 DNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTIS 161 (415)
T ss_pred hHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccc
Confidence 33334443 666666665443222211 335555555554443 2322 1223344444333210 000 0
Q ss_pred hHHHHHHHHHHHHHHHcCCCCc--chhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHH
Q 001804 651 LLQIQLLIALRNFVVALGYQSH--NCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEI 728 (1011)
Q Consensus 651 ~~~~~~l~~l~~l~~a~~~~~~--~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~ 728 (1011)
--....+-.++.++.++.++-. ...+++--++..+....+ ...-.-++.++..++.-.+.- +.+-.++..+...
T Consensus 162 ~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~---~~~~~~~~~~la~LvNK~~~~-~~l~~~l~~~~~~ 237 (415)
T PF12460_consen 162 EQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSED---EFSRLAALQLLASLVNKWPDD-DDLDEFLDSLLQS 237 (415)
T ss_pred cccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHHcCCCCh-hhHHHHHHHHHhh
Confidence 1233456667788888877632 233445555555555432 344456777888777664322 2344444444443
Q ss_pred HH-h-----chhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHhCCC--------
Q 001804 729 ME-R-----SFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPI-------- 794 (1011)
Q Consensus 729 l~-~-----~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~~~~-------- 794 (1011)
+. . ....++....+.++.+.+|.... ..+..-+-.++++ ++-...+.+..++++.-.+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~-----~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a 310 (415)
T PF12460_consen 238 ISSSEDSELRPQALEILIWITKALVMRGHPLA-----TELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHA 310 (415)
T ss_pred hcccCCcchhHHHHHHHHHHHHHHHHcCCchH-----HHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccc
Confidence 41 1 12455566666677777765432 2222222223332 21122334455555543211
Q ss_pred Cc-----hhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChHHHHHHhccchhhHHHhhcCCcchHHHH
Q 001804 795 QV-----PPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIEENML 869 (1011)
Q Consensus 795 ~~-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 869 (1011)
.+ +.++..++++++... .+.. ...+.+|+..++.++=.-|..++. ..+
T Consensus 311 ~vklLykQR~F~~~~p~L~~~~----~~~~---~~~k~~yL~ALs~ll~~vP~~vl~--------------------~~l 363 (415)
T PF12460_consen 311 NVKLLYKQRFFTQVLPKLLEGF----KEAD---DEIKSNYLTALSHLLKNVPKSVLL--------------------PEL 363 (415)
T ss_pred hhhhHHhHHHHHHHHHHHHHHH----hhcC---hhhHHHHHHHHHHHHhhCCHHHHH--------------------HHH
Confidence 12 334444444444332 1111 136788888888887666654332 023
Q ss_pred HHHHHHHHHcCCCCCchhhHHHHH-HHHHHhccCchHHH-HHHHHHHHHHHH
Q 001804 870 LSLVDIWLDKVDHVSSVQKKIFAL-ALSIILTMRLPQVL-DKLDQILSVCTS 919 (1011)
Q Consensus 870 ~~~~~~W~~~~~~~~~~~rKl~~l-aL~~Ll~~~~p~~l-~~l~~i~~~~~~ 919 (1011)
..++-.-.+.+ +..+.+-+.+++ .|..++.- .|+++ +++..+++.+.+
T Consensus 364 ~~LlPLLlqsL-~~~~~~v~~s~L~tL~~~l~~-~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 364 PTLLPLLLQSL-SLPDADVLLSSLETLKMILEE-APELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHh
Confidence 34444444444 333444444444 44445554 67776 777777776543
No 117
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.62 E-value=1.3e+02 Score=36.26 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=72.7
Q ss_pred HHhhHhhhccCCCchhHHHHHHHHHHhhhcc---CCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCcccc
Q 001804 511 GALSLDLSNDHPNMHIIHRKVAIILGQWVSE---IKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDF 587 (1011)
Q Consensus 511 ~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~---~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l 587 (1011)
.+++....++.. -||.|+|-++...... +++..+..+.+.++..+.|..+.||+.|..||..+-++.. .+.+
T Consensus 88 ~hlLRg~Eskdk---~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~--dee~ 162 (892)
T KOG2025|consen 88 YHLLRGTESKDK---KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK--DEEC 162 (892)
T ss_pred HHHHhcccCcch---hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC--CCcc
Confidence 344555544443 6999999999999882 5777888888888888889999999999999999986432 1222
Q ss_pred ccchHHHHHHHHHHHhHhhhhhhHHHHHHH-------HHHHHHhhc
Q 001804 588 TDLLPICWDSCFKLVEEVQEFDSKVQVLNL-------ISILIGHVS 626 (1011)
Q Consensus 588 ~p~l~~il~~L~~ll~~~~~~e~~~~l~~~-------l~~ii~~~~ 626 (1011)
++...+..+++.-.+.|.+..++.. +..|++|..
T Consensus 163 -----~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRar 203 (892)
T KOG2025|consen 163 -----PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERAR 203 (892)
T ss_pred -----cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhh
Confidence 2445555555544445555544433 345667766
No 118
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=81.35 E-value=7 Score=35.36 Aligned_cols=81 Identities=14% Similarity=0.142 Sum_probs=60.2
Q ss_pred ccccchHHHHHHHHHHHhHhh---hhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQ---EFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALR 661 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~---~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~ 661 (1011)
-+++++=.+++.+-..++..+ .-.-|.+.+.+|+.+|+.+|. +..+..+||..|..-.+ .+-++...++|..
T Consensus 4 fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~----~~eL~~~al~~W~ 79 (107)
T smart00802 4 FLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE----IPELRSLALRCWH 79 (107)
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----chhHHHHHHHHHH
Confidence 345566667777776666654 223367789999999998884 88888888888876443 3348888999999
Q ss_pred HHHHHcCCC
Q 001804 662 NFVVALGYQ 670 (1011)
Q Consensus 662 ~l~~a~~~~ 670 (1011)
.++..++++
T Consensus 80 ~~i~~L~~~ 88 (107)
T smart00802 80 VLIKTLKEE 88 (107)
T ss_pred HHHHhCCHH
Confidence 999999874
No 119
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=81.30 E-value=1.4e+02 Score=36.32 Aligned_cols=96 Identities=22% Similarity=0.162 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhhhccC--CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHH--HHHHHHHH
Q 001804 527 IHRKVAIILGQWVSEI--KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPIC--WDSCFKLV 602 (1011)
Q Consensus 527 lR~ra~~~lg~~~~~~--~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~i--l~~L~~ll 602 (1011)
+-..+..++|+|.+-+ +-=.-...++.+..+|+ -..+|.+||.++-.++..- ..+-+=.|.+..+ ..+++...
T Consensus 209 l~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKk-MkP~dKL~lln~L~q~l~lfg~~ 285 (980)
T KOG2021|consen 209 LINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKK-MKPMDKLALLNMLNQTLELFGYH 285 (980)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhh
Confidence 6677889999998843 21113445555555565 4678999999999888642 1233333455554 33444444
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhc-c
Q 001804 603 EEVQEFDSKVQVLNLISILIGHVS-E 627 (1011)
Q Consensus 603 ~~~~~~e~~~~l~~~l~~ii~~~~-e 627 (1011)
+.-+.+|.. +.+-++.++..+| |
T Consensus 286 s~dq~~d~d--f~e~vskLitg~gve 309 (980)
T KOG2021|consen 286 SADQMDDLD--FWESVSKLITGFGVE 309 (980)
T ss_pred ccccccCch--HHHHHHHHHhhccee
Confidence 333333322 5677777777777 5
No 120
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=79.48 E-value=8.2 Score=41.49 Aligned_cols=96 Identities=14% Similarity=0.119 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhhHh---hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhc-cC-Cc--chHHHHHHHHH
Q 001804 483 LLKDAAYGAAAYVYYE---LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS-EI-KD--DTKRAVYCALI 555 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~---l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~-~~-~~--~~~~~~~~~ll 555 (1011)
-.||-+.-|+|.+|-. ..+++=.-.-+++ ++..+.+..++..++| -+-|+++..+. +- +| +...+.++.+.
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galep-lL~ll~ss~~~ismlR-n~TWtLSNlcRGknP~P~w~~isqalpiL~ 249 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEP-LLGLLLSSAIHISMLR-NATWTLSNLCRGKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHH-HHHHHHhccchHHHHH-HhHHHHHHhhCCCCCCCchHHHHHHHHHHH
Confidence 5689999999999843 3333211111333 2344555544445555 58899999998 32 33 45788899999
Q ss_pred hhccCCChHHHHHHHHHHHHhhhhc
Q 001804 556 KLLMDKDLSVRLAACRSLCSHIEDA 580 (1011)
Q Consensus 556 ~~L~d~~~~Vr~~A~~aL~~~~~~~ 580 (1011)
.++...|.-|-+.||.|+..+.|..
T Consensus 250 KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 250 KLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred HHHhhcCHHHHHHHHHHHHHhccCc
Confidence 9998888889999999999887753
No 121
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.40 E-value=25 Score=34.52 Aligned_cols=76 Identities=14% Similarity=0.219 Sum_probs=52.7
Q ss_pred cchH-HHHHHHHHhhccCCChHH-HHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 001804 544 DDTK-RAVYCALIKLLMDKDLSV-RLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISIL 621 (1011)
Q Consensus 544 ~~~~-~~~~~~ll~~L~d~~~~V-r~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~i 621 (1011)
+++. ..+...+++.|+|+.+.- +.++..|+-.++... +..-.||++.++..++..+...+. ..+..++.-++.+
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l---~~~cv~~L~~viP~~l~~i~~~~~-~~~e~~~~qL~~l 155 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL---GLKCVPYLPQVIPIFLRVIRTCPD-SLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc---CcCchhHHHHHhHHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 3444 346788888888877664 446677887777654 334589999999999999998754 4444455556665
Q ss_pred HH
Q 001804 622 IG 623 (1011)
Q Consensus 622 i~ 623 (1011)
+.
T Consensus 156 v~ 157 (160)
T PF11865_consen 156 VS 157 (160)
T ss_pred HH
Confidence 54
No 122
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=78.77 E-value=1.2e+02 Score=33.96 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhh
Q 001804 527 IHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIED 579 (1011)
Q Consensus 527 lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~ 579 (1011)
=++-|.-++++|-..++ +.....+.+-+.+..|.|.-||..|.+-|-.||.+
T Consensus 40 ~k~lasq~ip~~fk~fp-~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFP-SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHHHHHHHHHHHHhhCc-hhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 57778888888877653 56667788888888899999999999999998875
No 123
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=78.55 E-value=17 Score=41.96 Aligned_cols=126 Identities=15% Similarity=0.061 Sum_probs=77.7
Q ss_pred ccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHh
Q 001804 437 LRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLD 516 (1011)
Q Consensus 437 ~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~ 516 (1011)
.+..+...+.+.+..-|+.= .-.++.+-.+++.| ...+-++..+|.++..-.....- ..+..++.+.
T Consensus 429 FK~~~Vdaisd~~~~~p~sk-EraLe~LC~fIEDc-----------ey~~I~vrIL~iLG~EgP~a~~P-~~yvrhIyNR 495 (898)
T COG5240 429 FKKYMVDAISDAMENDPDSK-ERALEVLCTFIEDC-----------EYHQITVRILGILGREGPRAKTP-GKYVRHIYNR 495 (898)
T ss_pred HHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHhhc-----------chhHHHHHHHHHhcccCCCCCCc-chHHHHHHHH
Confidence 34455555556555544322 23344455555422 23445566666666543222221 2244455555
Q ss_pred hhccCCCchhHHHHHHHHHHhhhccCC-cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhh
Q 001804 517 LSNDHPNMHIIHRKVAIILGQWVSEIK-DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 517 l~~~~~~~~~lR~ra~~~lg~~~~~~~-~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
+--.+. ++|+.|.-++++|+-..+ +-....+-.++-.|++|.|--||-.|+-+++++-+
T Consensus 496 ~iLEN~---ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 496 LILENN---IVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred HHHhhh---HHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 544444 899999999999987443 34455677778889999999999999999997653
No 124
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=78.43 E-value=1.2e+02 Score=33.77 Aligned_cols=96 Identities=10% Similarity=0.178 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhhcc-ccchHHHHHHHHHH----HHhhcc-ccchHHHHHHHHHHHHHHHcCC----CCcchhhhHHHHHH
Q 001804 614 VLNLISILIGHVSE-VIPYANKLVQFFQK----VWEESS-GESLLQIQLLIALRNFVVALGY----QSHNCYSMLLPILR 683 (1011)
Q Consensus 614 l~~~l~~ii~~~~e-i~p~~~~L~~~L~~----lw~~~~-~~~~~~~~~l~~l~~l~~a~~~----~~~~~~~~~~Pvi~ 683 (1011)
++.++++++.++++ +.|+...++..+.. +..++. +-+-.|.+....+..++...-+ -|+.....++--+.
T Consensus 92 vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~ 171 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIV 171 (319)
T ss_dssp HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999995 88888888776644 333332 3356666666666666665321 11122223334444
Q ss_pred hhcCCCCCCcchhhhhHHHHHHHHHhcCC
Q 001804 684 RGIDINSPDELNLLEDSMLLWEATISHAP 712 (1011)
Q Consensus 684 ~~l~~~~~~~~~l~e~~l~L~~~l~~~~~ 712 (1011)
.+++. ...+..+.||+.+..++.+..
T Consensus 172 wg~kh---~~~~I~~~~L~~l~~ll~~~~ 197 (319)
T PF08767_consen 172 WGFKH---TNREISETGLNILLELLNNVS 197 (319)
T ss_dssp HHHTS---SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCC---CcHHHHHHHHHHHHHHHHHHH
Confidence 44443 335788899999988888754
No 125
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=77.98 E-value=77 Score=38.97 Aligned_cols=106 Identities=13% Similarity=0.054 Sum_probs=69.3
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHH-H-HHHHhh
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAV-Y-CALIKL 557 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~-~-~~ll~~ 557 (1011)
++-..|-.|++.+|.+-.. .+-..+.+-+...+.++++ .||+.|+.+++.+-.. +++..... . ..+..+
T Consensus 104 ~N~~iR~~AlR~ls~l~~~-----el~~~~~~~ik~~l~d~~a---yVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l 174 (757)
T COG5096 104 PNEEIRGFALRTLSLLRVK-----ELLGNIIDPIKKLLTDPHA---YVRKTAALAVAKLYRL-DKDLYHELGLIDILKEL 174 (757)
T ss_pred CCHHHHHHHHHHHHhcChH-----HHHHHHHHHHHHHccCCcH---HHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHH
Confidence 5568899999999987644 1111234445667788888 9999999999987652 33333333 2 333344
Q ss_pred ccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHH
Q 001804 558 LMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFK 600 (1011)
Q Consensus 558 L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ 600 (1011)
+.|+|+.|-..|..+|..+.++ ...+|.......+-+
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~e------~a~~~~~~~~~~i~~ 211 (757)
T COG5096 175 VADSDPIVIANALASLAEIDPE------LAHGYSLEVILRIPQ 211 (757)
T ss_pred hhCCCchHHHHHHHHHHHhchh------hhhhHHHHHHHHhhh
Confidence 4699999999999999877654 344555555444433
No 126
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=77.93 E-value=13 Score=46.71 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=92.9
Q ss_pred HHHHHHHcc-cchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCC
Q 001804 445 YIVLFENHS-QLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPN 523 (1011)
Q Consensus 445 l~~l~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~ 523 (1011)
+..|+.-|+ +.---++++++-.+++ + .||..|-|.+-.|.-++-.+.. -..++.+.|.+.+.|.|+++
T Consensus 602 i~~LC~FFGk~ksND~iLshLiTfLN--------D-kDw~LR~aFfdsI~gvsi~VG~-rs~seyllPLl~Q~ltD~EE- 670 (1431)
T KOG1240|consen 602 IIPLCVFFGKEKSNDVILSHLITFLN--------D-KDWRLRGAFFDSIVGVSIFVGW-RSVSEYLLPLLQQGLTDGEE- 670 (1431)
T ss_pred HHHHHHHhhhcccccchHHHHHHHhc--------C-ccHHHHHHHHhhccceEEEEee-eeHHHHHHHHHHHhccCcch-
Confidence 444554454 1112334555556664 2 5899999988777655544432 23456788888889999988
Q ss_pred chhHHHHHHHHHHhhhc--cCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCC--ccccccchHHHHH
Q 001804 524 MHIIHRKVAIILGQWVS--EIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFS--ERDFTDLLPICWD 596 (1011)
Q Consensus 524 ~~~lR~ra~~~lg~~~~--~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~--~~~l~p~l~~il~ 596 (1011)
.|--+|+-+++-.++ .+..-....+.+.+..+|-.++.=||-++|.-+....+.+.-. .-.+.|++.+.+.
T Consensus 671 --~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 671 --AVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred --hhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 777788888887776 3566667778888888888999999999998887776554211 1134565555555
No 127
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.78 E-value=1.9e+02 Score=35.88 Aligned_cols=110 Identities=12% Similarity=0.168 Sum_probs=68.8
Q ss_pred HHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhhc
Q 001804 568 AACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKVWEES 646 (1011)
Q Consensus 568 ~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~lw~~~ 646 (1011)
++...+..+.+-..-.+-.+-|+++-+++.| ...+ + -.....++.++.+.+. ++.||++.++...-.+...+
T Consensus 528 Tss~~igs~s~~l~e~P~~ln~sl~~L~~~L----h~sk--~-s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~ 600 (982)
T KOG2022|consen 528 TSSDLIGSLSNWLGEHPMYLNPSLPLLFQGL----HNSK--E-SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS 600 (982)
T ss_pred HHHHHHHHHHHHHhcCCcccCchHHHHHHHh----cCch--H-HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc
Confidence 4444444444332212445556666555554 3221 1 1224567999999999 59999999999888777665
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhc
Q 001804 647 SGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGI 686 (1011)
Q Consensus 647 ~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l 686 (1011)
.-.+..+..++.+++.+++.+.. +..-.++.-++..++
T Consensus 601 ~~~~S~~~klm~sIGyvls~~~p--Ee~~kyl~~lin~il 638 (982)
T KOG2022|consen 601 NAKDSDRLKLMKSIGYVLSRLKP--EEIPKYLMKLINPIL 638 (982)
T ss_pred ccCchHHHHHHHHHHHHHHhccH--HhHHHHHHHHHHHHH
Confidence 44567777899999999999983 333344444444333
No 128
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=77.76 E-value=1.3e+02 Score=34.12 Aligned_cols=241 Identities=10% Similarity=0.089 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh--hcCCC--ChHHHHHHHhhHhhhccCCCchhHHHHHH
Q 001804 457 GPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE--LSNYL--SFKDWFNGALSLDLSNDHPNMHIIHRKVA 532 (1011)
Q Consensus 457 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~--l~~~~--~~~~~l~~~ll~~l~~~~~~~~~lR~ra~ 532 (1011)
++.+.+.++..+...++. +++.+-+.--+|+..+|.+-.. +...+ |+..|+..+.+..+.++. ..+-+..+..
T Consensus 37 ~~~l~~~i~rDi~~~~~~--~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~-~~K~i~~~~l 113 (372)
T PF12231_consen 37 MSLLLQFIQRDISSSSSK--GDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPN-SPKSICTHYL 113 (372)
T ss_pred HHHHHHHHHHHHhcccCC--CCCcchHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCC-CCHHHHHHHH
Q ss_pred HHHH--hhhccCCcchHHHHHHHHHhhccC--CChHHHHHHHHHHHHhhhhcCCCccccccchH----HHHHHHHHHHhH
Q 001804 533 IILG--QWVSEIKDDTKRAVYCALIKLLMD--KDLSVRLAACRSLCSHIEDANFSERDFTDLLP----ICWDSCFKLVEE 604 (1011)
Q Consensus 533 ~~lg--~~~~~~~~~~~~~~~~~ll~~L~d--~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~----~il~~L~~ll~~ 604 (1011)
|+++ +|...+-...+...+-.+++.+.+ +...|-..+..+++.++..+ ++.+..... .++..++.-.+.
T Consensus 114 ~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~---p~~M~~~~~~W~~~l~~~l~~~~k~ 190 (372)
T PF12231_consen 114 WCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQF---PQQMIKHADIWFPILFPDLLSSAKD 190 (372)
T ss_pred HHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhcchH
Q ss_pred hhh-------------hhhHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC
Q 001804 605 VQE-------------FDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 605 ~~~-------------~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~ 670 (1011)
+.. ...+. +...+..+.++.- +- .|++.+++.|..+.... ++......+-..+..++..-.-+
T Consensus 191 ir~~a~~l~~~~~~~l~~~~~-~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~ 267 (372)
T PF12231_consen 191 IRTKAISLLLEAKKCLGPNKE-LSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLD 267 (372)
T ss_pred HHHHHHHHHHHHHHHhChhHH-HHHHHHHHhccccccc-cHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhh
Q ss_pred CcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHh
Q 001804 671 SHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATIS 709 (1011)
Q Consensus 671 ~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~ 709 (1011)
.-.+..-.+-+.+.|++.++|... ..|+.-|..+++
T Consensus 268 ~w~~~n~wL~v~e~cFn~~d~~~k---~~A~~aW~~liy 303 (372)
T PF12231_consen 268 SWEHLNEWLKVPEKCFNSSDPQVK---IQAFKAWRRLIY 303 (372)
T ss_pred ccHhHhHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHH
No 129
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=77.60 E-value=16 Score=33.10 Aligned_cols=91 Identities=13% Similarity=0.203 Sum_probs=57.8
Q ss_pred ccchHHHHHHHHHHHHhhc--cccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHH
Q 001804 628 VIPYANKLVQFFQKVWEES--SGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWE 705 (1011)
Q Consensus 628 i~p~~~~L~~~L~~lw~~~--~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~ 705 (1011)
+.|+.-.|++.+....++. ......+-.++..+..++.-.|+.-..+.|-+.-.++.+++. .++-+.+++.|.
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-----~~l~~~al~~W~ 79 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-----PELREEALSCWN 79 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-----hhhHHHHHHHHH
Confidence 3455666666666655542 234556778899999999944443233445555555666543 378899999999
Q ss_pred HHHhcCCCCCHHHHhhHhHH
Q 001804 706 ATISHAPVMVPQLLAYFPCL 725 (1011)
Q Consensus 706 ~l~~~~~~~~~~l~~lf~~l 725 (1011)
.+++..+. +++..+++.+
T Consensus 80 ~fi~~L~~--~~l~~ll~~~ 97 (107)
T PF08064_consen 80 CFIKTLDE--EDLGPLLDQI 97 (107)
T ss_pred HHHHHCCH--HHHHHHHHHH
Confidence 99998763 3444444443
No 130
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=77.59 E-value=3.9 Score=29.63 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=25.0
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhh
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~ 577 (1011)
.++.++++|.+.+..||..|+.||.++.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5778889999999999999999999875
No 131
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.67 E-value=1.9e+02 Score=35.29 Aligned_cols=147 Identities=18% Similarity=0.101 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
.|.-.|.=+|+-++.-|.+ +.+..-...++++.+..+++| .+|.-|.-+.|...- +.....++.-+..++.
T Consensus 61 ~dlelKKlvyLYl~nYa~~---~P~~a~~avnt~~kD~~d~np---~iR~lAlrtm~~l~v---~~i~ey~~~Pl~~~l~ 131 (734)
T KOG1061|consen 61 RDLELKKLVYLYLMNYAKG---KPDLAILAVNTFLKDCEDPNP---LIRALALRTMGCLRV---DKITEYLCDPLLKCLK 131 (734)
T ss_pred CCchHHHHHHHHHHHhhcc---CchHHHhhhhhhhccCCCCCH---HHHHHHhhceeeEee---hHHHHHHHHHHHHhcc
Confidence 4566777777777665533 222233355667788888887 888877766655422 3456777888899999
Q ss_pred CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-----cc-cchHH
Q 001804 560 DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-----EV-IPYAN 633 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-----ei-~p~~~ 633 (1011)
|.+..||.+|+.+.+.+-+.. .+...+ .+++..|-.++..- ....-...+.++..|.+.-. ++ .+++.
T Consensus 132 d~~~yvRktaa~~vakl~~~~---~~~~~~--~gl~~~L~~ll~D~-~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~ 205 (734)
T KOG1061|consen 132 DDDPYVRKTAAVCVAKLFDID---PDLVED--SGLVDALKDLLSDS-NPMVVANALAALSEIHESHPSVNLLELNPQLIN 205 (734)
T ss_pred CCChhHHHHHHHHHHHhhcCC---hhhccc--cchhHHHHHHhcCC-CchHHHHHHHHHHHHHHhCCCCCcccccHHHHH
Confidence 999999999999998886542 222221 33444444444421 11111223444555554432 12 33566
Q ss_pred HHHHHHHH
Q 001804 634 KLVQFFQK 641 (1011)
Q Consensus 634 ~L~~~L~~ 641 (1011)
.++..|..
T Consensus 206 ~lL~al~e 213 (734)
T KOG1061|consen 206 KLLEALNE 213 (734)
T ss_pred HHHHHHHH
Confidence 66666654
No 132
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.96 E-value=2.6e+02 Score=36.00 Aligned_cols=278 Identities=13% Similarity=0.082 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHhhhccCCcchHHHHHHHHHhhc-cCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhH
Q 001804 526 IIHRKVAIILGQWVSEIKDDTKRAVYCALIKLL-MDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEE 604 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L-~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~ 604 (1011)
+.+.+-...+-..+...+.+....+| .+.+.. +..+..||..|.+-|..++.-.. ..-....++..|.+.|+.-++.
T Consensus 631 ~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s-~~~~~~q~i~~I~n~L~ds~qs 708 (1176)
T KOG1248|consen 631 FKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPS-GEGLVEQRIDDIFNSLLDSFQS 708 (1176)
T ss_pred HHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHHHHHHhc
Confidence 56666666665555555556666666 333333 34578899999988888876521 1113445677788888887777
Q ss_pred hhhhhhHHHHHHHHHHHHHhhc-cccchHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHc--CCCC-cchhhhHH
Q 001804 605 VQEFDSKVQVLNLISILIGHVS-EVIPYANKLVQFFQKVWEESSG-ESLLQIQLLIALRNFVVAL--GYQS-HNCYSMLL 679 (1011)
Q Consensus 605 ~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~~~L~~lw~~~~~-~~~~~~~~l~~l~~l~~a~--~~~~-~~~~~~~~ 679 (1011)
+.... +.--+.|+..+++..+ +...+...+++-+.-...+.++ ..--+..+|-+|+.+..++ |+++ ....+-++
T Consensus 709 ~~~~~-~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl 787 (1176)
T KOG1248|consen 709 SSSPA-QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFL 787 (1176)
T ss_pred cchHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 75433 4446899999999888 4444444443332222222221 2234455666666433443 3333 22233455
Q ss_pred HHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC-CC-HHHHhhHhHHHHHHHh-chhhHHHHHHHHHHHHhcchhhhhh
Q 001804 680 PILRRGIDINSPDELNLLEDSMLLWEATISHAPV-MV-PQLLAYFPCLVEIMER-SFDHLQVAINIIEGYIILGGTDFLN 756 (1011)
Q Consensus 680 Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~-~~-~~l~~lf~~l~~~l~~-~~~~l~~~~~il~~yi~lg~~~~l~ 756 (1011)
++|...+-.+++.. ....+--+..+++..+. ++ +.+..++..+-.++.. +-+....+...+..|+..-|+..++
T Consensus 788 ~~Isagl~gd~~~~---~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~ 864 (1176)
T KOG1248|consen 788 SIISAGLVGDSTRV---VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS 864 (1176)
T ss_pred HHHHhhhcccHHHH---HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh
Confidence 55555554322211 11113334445554443 33 4456788888888875 5677888899999999999999888
Q ss_pred hhHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHhCCC-CchhHHHHHHHHHHH
Q 001804 757 MHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPI-QVPPLISCSLQKLIV 809 (1011)
Q Consensus 757 ~~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~~~~-~~~~~~~~~l~~l~~ 809 (1011)
.|.+.+...+..+..+.+..-...+-.++|.+++.++. ++.++++.-..+++.
T Consensus 865 ~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~ 918 (1176)
T KOG1248|consen 865 PHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLT 918 (1176)
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHH
Confidence 77776665555566555554555566789999999853 445666554444443
No 133
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=74.94 E-value=1.4e+02 Score=33.05 Aligned_cols=129 Identities=14% Similarity=0.116 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhhcc---c-cchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcc-----hhhhHHHHHHh
Q 001804 614 VLNLISILIGHVSE---V-IPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHN-----CYSMLLPILRR 684 (1011)
Q Consensus 614 l~~~l~~ii~~~~e---i-~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~-----~~~~~~Pvi~~ 684 (1011)
++..+++.+++..+ + .-++..++..+..-.+++..+... ..+|.++++++..+++.-.. +...+-|.+..
T Consensus 47 IL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~-~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~M 125 (319)
T PF08767_consen 47 ILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDARE-PEVLSLMATIINKLGELIQPQVPQILEAVFECTLPM 125 (319)
T ss_dssp HHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS--HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccC-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 77888888888773 2 123344444333333332211111 35789999999999984221 22333444444
Q ss_pred hcCCCCCCcchhhhhHHHHHHHHHhcCCC----CCHHHH-hhHhHHHHHHHh-chhhHHHHHHHHH
Q 001804 685 GIDINSPDELNLLEDSMLLWEATISHAPV----MVPQLL-AYFPCLVEIMER-SFDHLQVAINIIE 744 (1011)
Q Consensus 685 ~l~~~~~~~~~l~e~~l~L~~~l~~~~~~----~~~~l~-~lf~~l~~~l~~-~~~~l~~~~~il~ 744 (1011)
+.+ +..++.++...=+.|+.++++++.. ++|+.. .++..+.-.+.+ ..+....++.++.
T Consensus 126 I~~-d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~ 190 (319)
T PF08767_consen 126 INK-DFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILL 190 (319)
T ss_dssp HSS-TSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred HHh-hhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 433 2334567777888899999998652 344333 344555555554 2333344444443
No 134
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=74.67 E-value=1.8e+02 Score=34.16 Aligned_cols=253 Identities=17% Similarity=0.171 Sum_probs=133.9
Q ss_pred CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-cc----chHHHH
Q 001804 561 KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VI----PYANKL 635 (1011)
Q Consensus 561 ~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~----p~~~~L 635 (1011)
..+..|+.|+..|+..+..+.. .-++.|...-=.++..-+..+.+...+..+..+|++-.. .. -|+..|
T Consensus 2 ~~l~~R~~a~~~l~~~i~~~~~------~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I 75 (464)
T PF11864_consen 2 QPLSERIKAAEELCESIQKYPL------SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI 75 (464)
T ss_pred CCHHHHHHHHHHHHHHHHhCCc------hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 4567899999998888877632 334555555555555544556677788888888877663 21 134433
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHH----hhcC---------C----CC-CC-----
Q 001804 636 VQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILR----RGID---------I----NS-PD----- 692 (1011)
Q Consensus 636 ~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~----~~l~---------~----~~-~~----- 692 (1011)
..+ ..+++--.+..+|.+|+. =|.+=..+..-+.|++. .+.+ . .. ..
T Consensus 76 ~~~------~~~~d~~~~l~aL~~LT~----~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 145 (464)
T PF11864_consen 76 SDP------SNDDDFDLRLEALIALTD----NGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLD 145 (464)
T ss_pred hcC------CCchhHHHHHHHHHHHHc----CCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 110 111222333333443332 22221112222222222 2220 0 00 00
Q ss_pred -cchhhhhHHHHHHHHHhcCC-CCCH-HHHhhHhHHHHHHHh--chhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHH
Q 001804 693 -ELNLLEDSMLLWEATISHAP-VMVP-QLLAYFPCLVEIMER--SFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLD 767 (1011)
Q Consensus 693 -~~~l~e~~l~L~~~l~~~~~-~~~~-~l~~lf~~l~~~l~~--~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~ 767 (1011)
....+.+-|+++..+++.-. .+++ .+..+...+..+... ..+.+..++.++++-+.+|.-- ......+..++.
T Consensus 146 ~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP--~~sl~~~i~vLC 223 (464)
T PF11864_consen 146 NEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP--SESLSPCIEVLC 223 (464)
T ss_pred chhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC--hHHHHHHHHHHh
Confidence 12345677778888877653 4564 455677777777544 3567899999999999988521 123344445555
Q ss_pred HhhcCccchhHhhHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhC
Q 001804 768 LVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMN 840 (1011)
Q Consensus 768 ~~l~~~~~~~~~~~~~l~e~ll~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~ 840 (1011)
.+.+.. +-...+|+++..+++.. .....+. .|..++.++. ........+....+.++.++++..
T Consensus 224 si~~~~--~l~~~~w~~m~nL~~S~--~g~~~i~----~L~~iL~~~~-~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 224 SIVNSV--SLCKPSWRTMRNLLKSH--LGHSAIR----TLCDILRSPD-PQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred hHhccc--ccchhHHHHHHHHHcCc--cHHHHHH----HHHHHHcccC-ccccccHHHHhhHHHHHHHHHhcc
Confidence 554432 22234788888877542 1233333 3333332111 111112356677788888888766
No 135
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=73.42 E-value=53 Score=39.50 Aligned_cols=116 Identities=18% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHH--hhhccCC-cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhh
Q 001804 502 YLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILG--QWVSEIK-DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 502 ~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg--~~~~~~~-~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
+-+|...+.+.|.|.++.+++ .+.++|.+=- -..++.+ ++....+++.+...+.|.+..+|..+...+.++.+
T Consensus 343 ~~~~~~~~~p~l~pi~~~~~~----~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e 418 (700)
T KOG2137|consen 343 QNEFGPKMLPALKPIYSASDP----KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAE 418 (700)
T ss_pred hhhhhhhhhHHHHHHhccCCc----ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHH
Confidence 345555566777777776655 2333343311 1233444 46678899999999999999999999999988877
Q ss_pred hcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc
Q 001804 579 DANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 579 ~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ 626 (1011)
-.+ ...++. .|+-.+-++.-.......+..++.|++.+++++.
T Consensus 419 ~iD--~~~vk~---~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 419 SID--VPFVKQ---AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred hcc--HHHHHH---HHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 643 222332 2233333332222223446668888888887766
No 136
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.06 E-value=1.3e+02 Score=37.01 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhccC-CChHHHHHHHHHHHHhhhhcCCCcccccc--chHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 001804 547 KRAVYCALIKLLMD-KDLSVRLAACRSLCSHIEDANFSERDFTD--LLPICWDSCFKLVEEVQEFDSKVQVLNLISILIG 623 (1011)
Q Consensus 547 ~~~~~~~ll~~L~d-~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p--~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~ 623 (1011)
...+.+.++.+|++ .+.-+...||+||..++|-++-+.....- -+|-+++.|+ .++.-|.-.+.+.++..|-.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~----~IeyiDvAEQ~LqALE~iSR 284 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLL----TIEYIDVAEQSLQALEKISR 284 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhh----hhhhhHHHHHHHHHHHHHHh
Confidence 45677888888885 46779999999999999987422222222 2344444443 33333444457788877766
Q ss_pred hhcc-ccchHHHHHHHHH--HHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhH
Q 001804 624 HVSE-VIPYANKLVQFFQ--KVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDS 700 (1011)
Q Consensus 624 ~~~e-i~p~~~~L~~~L~--~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~ 700 (1011)
+-+. +- -+..|+..|. ..+. .-+.-..|.+....+.++.++...+.--++|++...++..+.. .+|.+
T Consensus 285 ~H~~AiL-~AG~l~a~LsylDFFS-----i~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k---~ies~ 355 (1051)
T KOG0168|consen 285 RHPKAIL-QAGALSAVLSYLDFFS-----IHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKK---PIESV 355 (1051)
T ss_pred hccHHHH-hcccHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccch---hHHHH
Confidence 5553 31 1334444432 2221 1122235677778888888876666666788888888653322 34555
Q ss_pred HHHHHHHHhc
Q 001804 701 MLLWEATISH 710 (1011)
Q Consensus 701 l~L~~~l~~~ 710 (1011)
+--+..++.+
T Consensus 356 ~ic~~ri~d~ 365 (1051)
T KOG0168|consen 356 CICLTRIADG 365 (1051)
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 137
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=72.69 E-value=65 Score=40.94 Aligned_cols=129 Identities=20% Similarity=0.193 Sum_probs=91.2
Q ss_pred HHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh-hcCC------CChHHHHHHHhhH
Q 001804 443 ALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE-LSNY------LSFKDWFNGALSL 515 (1011)
Q Consensus 443 ~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~-l~~~------~~~~~~l~~~ll~ 515 (1011)
+.|..++..-|..+++.+.-++. .+ +.++...|-|.+-++|.+-.. +.+. ......+...|..
T Consensus 297 ~fL~elS~~~P~l~~~~l~~lv~-ll---------d~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~e 366 (1251)
T KOG0414|consen 297 NFLVELSERVPKLMLRQLTLLVD-LL---------DSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRE 366 (1251)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH-hc---------CCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH
Confidence 34555666666555544433333 22 246788999999999876533 3321 1122224555666
Q ss_pred hhhccCCCchhHHHHHHHHHHhhhcc--CCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCc
Q 001804 516 DLSNDHPNMHIIHRKVAIILGQWVSE--IKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSE 584 (1011)
Q Consensus 516 ~l~~~~~~~~~lR~ra~~~lg~~~~~--~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~ 584 (1011)
.+.|-.+ ++|.++.-...+.+.. .+...+..+...++..|.|.+..||-.|+.=+..+.+.-+|..
T Consensus 367 rl~Dvsa---~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~ 434 (1251)
T KOG0414|consen 367 RLLDVSA---YVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSS 434 (1251)
T ss_pred HhhcccH---HHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchh
Confidence 7777766 8999999999998773 5667789999999999999999999999999999998766654
No 138
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.46 E-value=42 Score=33.65 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhhHhhcCCCChHHHHHHHhhH----------------hhhccCCCchhHHHHHHHHHHhhhcc----C-
Q 001804 484 LKDAAYGAAAYVYYELSNYLSFKDWFNGALSL----------------DLSNDHPNMHIIHRKVAIILGQWVSE----I- 542 (1011)
Q Consensus 484 ~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~----------------~l~~~~~~~~~lR~ra~~~lg~~~~~----~- 542 (1011)
.|-+|+.+++.++....+..=+.-| +.++| .+.|+.+ -+|..|+-+++..-+. +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW--~~llP~~~~~~~~~~~sLlt~il~Dp~~---kvR~aA~~~l~~lL~gsk~~L~ 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYW--PALLPDSVLQGRPATPSLLTCILKDPSP---KVRAAAASALAALLEGSKPFLA 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhH--HHHCCCCCCcCCCCCcchhHHHHcCCch---hHHHHHHHHHHHHHHccHHHHH
Confidence 4678888888887664443322222 22333 3345555 5899999998765442 1
Q ss_pred -----C-c------------chHHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccc-cchHHHHHHHHHHH
Q 001804 543 -----K-D------------DTKRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFT-DLLPICWDSCFKLV 602 (1011)
Q Consensus 543 -----~-~------------~~~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~-p~l~~il~~L~~ll 602 (1011)
. + .....++.+++..|+ .++.++-....+++..++...++. .+. .+++.++..+..++
T Consensus 77 ~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~--rL~~~ll~~~v~~v~~~l 154 (182)
T PF13251_consen 77 QAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYH--RLPPGLLTEVVTQVRPLL 154 (182)
T ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChh--hcCHhHHHHHHHHHHHHH
Confidence 0 1 234667788888887 567888889999999999876543 333 47777888877777
Q ss_pred hHhhhhhhHHHHHHHHHHHHHh
Q 001804 603 EEVQEFDSKVQVLNLISILIGH 624 (1011)
Q Consensus 603 ~~~~~~e~~~~l~~~l~~ii~~ 624 (1011)
.+- +.+.+...+.+++.++..
T Consensus 155 ~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 155 RHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred hcC-CCcHHHHHHHHHHHHHcC
Confidence 774 335566667788877653
No 139
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=72.30 E-value=2.5e+02 Score=34.72 Aligned_cols=382 Identities=14% Similarity=0.158 Sum_probs=171.4
Q ss_pred HHHHHHHhhhHhhcCCCC-hHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc-CCc-c-hHHHHHHHHHhhccCCC
Q 001804 487 AAYGAAAYVYYELSNYLS-FKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE-IKD-D-TKRAVYCALIKLLMDKD 562 (1011)
Q Consensus 487 A~l~alg~~a~~l~~~~~-~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~-~~~-~-~~~~~~~~ll~~L~d~~ 562 (1011)
++++.+..+|+...-... .+.-+.+.|+..|..++. -+.--+..++.+.+-. -+. . ....+.+.+.+++..++
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~---ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENE---ELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 556667777654110000 011144556667766544 2555556666655532 111 1 12346777788888777
Q ss_pred hHHHHHHHHHHHHhhhhcCCCccccccchHH--HHHHHHHHHhHhhhhhhHHHHHHHHHHHHH--hhccccchHHHHHHH
Q 001804 563 LSVRLAACRSLCSHIEDANFSERDFTDLLPI--CWDSCFKLVEEVQEFDSKVQVLNLISILIG--HVSEVIPYANKLVQF 638 (1011)
Q Consensus 563 ~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~--il~~L~~ll~~~~~~e~~~~l~~~l~~ii~--~~~ei~p~~~~L~~~ 638 (1011)
..++..|.+.|.++--+. .+++.+-. ++..|..+++.- +....++..+..+.. +...+-.|.+ -+|.
T Consensus 345 ~~l~~~aLrlL~NLSfd~-----~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~ 415 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFDP-----ELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTD-CIPQ 415 (708)
T ss_pred HHHHHHHHHHHHHhCcCH-----HHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcc-hHHH
Confidence 788888889888876543 22222221 344455555433 222222233322221 1111111222 3344
Q ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchh--hhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCH
Q 001804 639 FQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCY--SMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVP 716 (1011)
Q Consensus 639 L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~--~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~ 716 (1011)
+.++..+..++.. ...++..+..+...-.. ...+. +-+-.+++++++..+|- .+-++..+.++.+..-.
T Consensus 416 L~~~Ll~~~~~~v-~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D~l-------LlKlIRNiS~h~~~~k~ 486 (708)
T PF05804_consen 416 LMQMLLENSEEEV-QLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRDPL-------LLKLIRNISQHDGPLKE 486 (708)
T ss_pred HHHHHHhCCCccc-cHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcccHH-------HHHHHHHHHhcCchHHH
Confidence 4443322222111 11112222111111110 01111 34566777777643221 12244444443322111
Q ss_pred HHHhhHhHHHHHHHh--chhhHHHHHHHHHHHHhcc--hhhhhhhhHHHHHHHHHHhhc-CccchhHhhHHHHHHHHHHh
Q 001804 717 QLLAYFPCLVEIMER--SFDHLQVAINIIEGYIILG--GTDFLNMHASCVAKLLDLVVG-NVNDKGLLIILPVIDMLIQC 791 (1011)
Q Consensus 717 ~l~~lf~~l~~~l~~--~~~~l~~~~~il~~yi~lg--~~~~l~~~~~~l~~~~~~~l~-~~~~~~~~~~~~l~e~ll~~ 791 (1011)
.+......++.++.. +.|.+-+++.+|.|.-.-+ -..+++. ..+...+...+. ...+++.. +|+++..
T Consensus 487 ~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~--~~llp~L~~~L~~g~~~dDl~-----LE~Vi~~ 559 (708)
T PF05804_consen 487 LFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQE--YNLLPWLKDLLKPGASEDDLL-----LEVVILL 559 (708)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHh--CCHHHHHHHHhCCCCCChHHH-----HHHHHHH
Confidence 223344445555543 4567778888888765432 2223321 123334444442 22222311 2222211
Q ss_pred ----CCCCchhHHH--HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChHHHHHHhccchhhHHHhhcCCcch
Q 001804 792 ----FPIQVPPLIS--CSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQLTSEPSLSLLLQQAGIPIE 865 (1011)
Q Consensus 792 ----~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 865 (1011)
.+...++++. .+...++..+.. . .++ ..+...++.+|.|++.. +..--.++. +.+
T Consensus 560 gtla~d~~~A~lL~~sgli~~Li~LL~~-k-qeD---dE~VlQil~~f~~ll~h-~~tr~~ll~---------~~~---- 620 (708)
T PF05804_consen 560 GTLASDPECAPLLAKSGLIPTLIELLNA-K-QED---DEIVLQILYVFYQLLFH-EETREVLLK---------ETE---- 620 (708)
T ss_pred HHHHCCHHHHHHHHhCChHHHHHHHHHh-h-Cch---HHHHHHHHHHHHHHHcC-hHHHHHHHh---------ccc----
Confidence 1223344443 244555554422 1 112 24666778888888765 333233322 222
Q ss_pred HHHHHHHHHHHHHcCCCCCch-hhHHHHHHHHHHhccCchHH--H--HHHHHHHHHHHHHhh
Q 001804 866 ENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMRLPQV--L--DKLDQILSVCTSVIL 922 (1011)
Q Consensus 866 ~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~--l--~~l~~i~~~~~~~l~ 922 (1011)
+...+++..-+ ++. =||++-.+|--+.....-.+ + .+|...=.-|.+++.
T Consensus 621 --~~~ylidL~~d-----~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~ 675 (708)
T PF05804_consen 621 --IPAYLIDLMHD-----KNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVE 675 (708)
T ss_pred --hHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 23344443322 233 57888888777777643222 2 677777778999873
No 140
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.63 E-value=23 Score=35.75 Aligned_cols=135 Identities=10% Similarity=0.116 Sum_probs=87.5
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhh--
Q 001804 548 RAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHV-- 625 (1011)
Q Consensus 548 ~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~-- 625 (1011)
...+..+...|.+-+-+-|.-|-..+..++... ++.+.|.+|+++--|=..+..-+ .+.....+.+|+.++-..
T Consensus 113 ~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~---g~kilpVLPqLI~plK~al~trd-~ev~~~~Lkvlq~lv~~~~~ 188 (262)
T KOG3961|consen 113 CPYLPLFFDGLAETDHPYRFVARQGITDLLLAG---GEKILPVLPQLILPLKAALVTRD-DEVICRTLKVLQQLVVSVGC 188 (262)
T ss_pred hHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhc---ccccccccHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhccc
Confidence 344555555566667777888877777777653 57899999999998888887653 344444566666666544
Q ss_pred -cc-ccchHHHHHHHHHHHHhh----cc----ccch-HHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhc
Q 001804 626 -SE-VIPYANKLVQFFQKVWEE----SS----GESL-LQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGI 686 (1011)
Q Consensus 626 -~e-i~p~~~~L~~~L~~lw~~----~~----~~~~-~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l 686 (1011)
|. +.||.-+|++.+.-.=+. .+ |+.. +-.-+=+++..+-.+=|++.-.-..+++|.++.|.
T Consensus 189 vG~aLVPfYRQlLp~~n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAfINIKY~vPtYESC~ 260 (262)
T KOG3961|consen 189 VGAALVPFYRQLLPVLNTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAFINIKYMVPTYESCC 260 (262)
T ss_pred cchhhhhHHHHhhhhhhhhcccccccccccCccccccHHHHHHHHHHHHHHcCCccceeeEeeccCcchhhc
Confidence 43 899999999987643221 11 1111 21223477777777777765444467888877764
No 141
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=71.49 E-value=26 Score=44.44 Aligned_cols=108 Identities=15% Similarity=0.146 Sum_probs=80.3
Q ss_pred hhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchH
Q 001804 513 LSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLP 592 (1011)
Q Consensus 513 ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~ 592 (1011)
+..-+.+.++ .+|..++-++|-+......+....+++.++.++.+.+..||-.++..+-..+... -...+.||.+
T Consensus 821 l~~~~~s~~~---a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~--l~~~l~~~~~ 895 (1549)
T KOG0392|consen 821 LFFFVRSIHI---AVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAV--LMVGLVPYNP 895 (1549)
T ss_pred HHHhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHh--hcccccccce
Confidence 3344455565 7999999999999887777889999999999999999999887777666555543 2457889999
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc
Q 001804 593 ICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 593 ~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ 626 (1011)
-++.-|+..+....+ ..+.....+...+|--.+
T Consensus 896 Llv~pllr~msd~~d-~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 896 LLVVPLLRRMSDQID-SVREAATKVFAKLIPLLP 928 (1549)
T ss_pred eehhhhhcccccchH-HHHHHHHHHHHHHhcccc
Confidence 888888888876532 223345666777765555
No 142
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=71.48 E-value=1.5e+02 Score=32.51 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=92.8
Q ss_pred HhcCCChhhhHHHHHHHHHhhc-----CCChHHHHHHHHHhcCCCCCHHHHHHHH-----HHHhhccccccccccCCCCC
Q 001804 17 NSMSRDESIRKPAEAALSQSES-----RPGFCSCLMEVITAKDLASQVDVRLMAS-----VYFKNSINRYWRNRRDSVGI 86 (1011)
Q Consensus 17 ~s~s~d~~~r~~Ae~~L~~~~~-----~pgf~~~L~~i~~~~~~~~~~~vR~~Aa-----I~lKN~I~~~W~~~~~~~~i 86 (1011)
+..|+|+.+|..|=.-|--+-- ...+...+.+.+.+. +..+|-.|. +.+..++......... -
T Consensus 35 ~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~----~~~v~~~al~~l~Dll~~~g~~~~~~~~~~---~ 107 (298)
T PF12719_consen 35 AVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD----DEEVKITALKALFDLLLTHGIDIFDSESDN---D 107 (298)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHcCchhccchhcc---C
Confidence 4568899999999988875432 235667777777443 367777664 3444444433332110 1
Q ss_pred CHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhhccc
Q 001804 87 SNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKR 166 (1011)
Q Consensus 87 ~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~~r 166 (1011)
.......+-+.+...+.+.++.++...++.++|+.-.+-...||+++..|+-.-=++......+.-.+|..+++.|++.+
T Consensus 108 ~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~ 187 (298)
T PF12719_consen 108 ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS 187 (298)
T ss_pred ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence 23345567777788888788899999999999999888776689999988766533321111233455666777777543
No 143
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=70.90 E-value=16 Score=42.00 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCC
Q 001804 483 LLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKD 562 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~ 562 (1011)
-.|.||..|+|-++-. + -+ .+...+ ..|.+.|. +.||.-.+..+|-++..-.. ......+-.++.|.+
T Consensus 567 DVrRAAViAlGfvc~~--D-~~---~lv~tv-elLs~shN--~hVR~g~AvaLGiacag~G~---~~a~diL~~L~~D~~ 634 (926)
T COG5116 567 DVRRAAVIALGFVCCD--D-RD---LLVGTV-ELLSESHN--FHVRAGVAVALGIACAGTGD---KVATDILEALMYDTN 634 (926)
T ss_pred HHHHHHHHheeeeEec--C-cc---hhhHHH-HHhhhccc--hhhhhhhHHHhhhhhcCCcc---HHHHHHHHHHhhCcH
Confidence 4588889999877632 1 11 133333 33444332 37999999999998874322 223344445566888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhh
Q 001804 563 LSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQ 606 (1011)
Q Consensus 563 ~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 606 (1011)
--||-.|+.|+.-+.-.+ .+.+.|....|...+.+++.+-.
T Consensus 635 dfVRQ~AmIa~~mIl~Q~---n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 635 DFVRQSAMIAVGMILMQC---NPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHHHHHHHhhc---CcccChhHHHHHHHHHHHHhhhh
Confidence 889999999998776554 46899999999999888887653
No 144
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=70.86 E-value=2.2e+02 Score=33.46 Aligned_cols=190 Identities=12% Similarity=0.018 Sum_probs=113.7
Q ss_pred hHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhc-cCCcchHHHHHHHHHhhccC
Q 001804 482 LLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVS-EIKDDTKRAVYCALIKLLMD 560 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~-~~~~~~~~~~~~~ll~~L~d 560 (1011)
....-|..+.+-...+-+...-++-.++.++|-.-+.+... +|.--++-.+-+++. .++++...+....+-.+|..
T Consensus 238 mknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~e---mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s 314 (898)
T COG5240 238 MKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFE---MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKS 314 (898)
T ss_pred cccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcch---hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 34466777777777777877777666677777666776554 677777888888887 47888899999999999988
Q ss_pred CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHH---------HHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccc
Q 001804 561 KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWD---------SCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIP 630 (1011)
Q Consensus 561 ~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~---------~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p 630 (1011)
...+.|.+|.+.|..+.-..+.....--|-++.++. .+-.|++.- .+++--+++..|-+++.-+++ ++-
T Consensus 315 ~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKi 393 (898)
T COG5240 315 TRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKI 393 (898)
T ss_pred chHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcC-chhhHHHHHHHHHHHHHhhccCceE
Confidence 888899999999998875543222222333443332 122333332 334444466666666655552 322
Q ss_pred ----hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcC
Q 001804 631 ----YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 631 ----~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~ 687 (1011)
-...|.-.+|+.|. ++|+.++.++.-=|. -.|..+++..|..+++
T Consensus 394 I~ida~rsLsl~Fp~k~~----------s~l~FL~~~L~~eGg--~eFK~~~Vdaisd~~~ 442 (898)
T COG5240 394 IAIDALRSLSLLFPSKKL----------SYLDFLGSSLLQEGG--LEFKKYMVDAISDAME 442 (898)
T ss_pred EeHHHHHHHHhhCcHHHH----------HHHHHHHHHHHhccc--chHHHHHHHHHHHHHh
Confidence 22233334444443 234444444433222 2344555555555554
No 145
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=70.65 E-value=1.3e+02 Score=31.90 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=82.5
Q ss_pred hccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCc-cc------cccc
Q 001804 518 SNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSE-RD------FTDL 590 (1011)
Q Consensus 518 ~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~-~~------l~p~ 590 (1011)
.++.| +||--|..++|.... +.+.+.+-+..+|+.+.||.++-.|++.+-..-.... .. .-|-
T Consensus 79 esq~p---mvRhEAaealga~~~-------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa 148 (289)
T KOG0567|consen 79 ESQEP---MVRHEAAEALGAIGD-------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPA 148 (289)
T ss_pred cccch---HHHHHHHHHHHhhcc-------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCC
Confidence 34555 999999999999752 2234444555578999999998899988753221111 11 2222
Q ss_pred hHHH---HHHHH--------HHHhHhhhhhhHHHH--HHHHHHHHHhhc-c---ccc---h-HHH-----HHHHHHHHHh
Q 001804 591 LPIC---WDSCF--------KLVEEVQEFDSKVQV--LNLISILIGHVS-E---VIP---Y-ANK-----LVQFFQKVWE 644 (1011)
Q Consensus 591 l~~i---l~~L~--------~ll~~~~~~e~~~~l--~~~l~~ii~~~~-e---i~p---~-~~~-----L~~~L~~lw~ 644 (1011)
.+.- +..+- .++.++.-.-..... =++|..+++.++ + ++- | ..+ -+|.|.+...
T Consensus 149 ~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~ 228 (289)
T KOG0567|consen 149 PPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLL 228 (289)
T ss_pred CccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHH
Confidence 2211 22221 122222110000011 356777888777 4 221 1 111 1556666666
Q ss_pred hccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcC
Q 001804 645 ESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 645 ~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~ 687 (1011)
...+++|+|..+.++|+.+.. +-.+++++.-+.
T Consensus 229 d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~ 261 (289)
T KOG0567|consen 229 DETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLG 261 (289)
T ss_pred hhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcC
Confidence 667889999988888766432 235555655554
No 146
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=70.32 E-value=26 Score=42.97 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHH
Q 001804 455 LLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAII 534 (1011)
Q Consensus 455 ~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~ 534 (1011)
.+++.+.+.+.+... ..+-..+-.++.|||.++.. . ..+.+.|.+.+..+....+|-.|+|.
T Consensus 486 ~~~~~l~~~l~~~~~---------~~~~~~~~~~LkaLgN~g~~--~-------~i~~l~~~i~~~~~~~~~~R~~Ai~A 547 (618)
T PF01347_consen 486 KYVPYLEQELKEAVS---------RGDEEEKIVYLKALGNLGHP--E-------SIPVLLPYIEGKEEVPHFIRVAAIQA 547 (618)
T ss_dssp GGTHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHT-G--G-------GHHHHHTTSTTSS-S-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------ccCHHHHHHHHHHhhccCCc--h-------hhHHHHhHhhhccccchHHHHHHHHH
Confidence 345666666664443 13346788899999998743 1 22345566655533445899999999
Q ss_pred HHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHH
Q 001804 535 LGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLC 574 (1011)
Q Consensus 535 lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~ 574 (1011)
+.+++...+...+..+++++.+- ..+.-||++|...|-
T Consensus 548 lr~~~~~~~~~v~~~l~~I~~n~--~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 548 LRRLAKHCPEKVREILLPIFMNT--TEDPEVRIAAYLILM 585 (618)
T ss_dssp TTTGGGT-HHHHHHHHHHHHH-T--TS-HHHHHHHHHHHH
T ss_pred HHHHhhcCcHHHHHHHHHHhcCC--CCChhHHHHHHHHHH
Confidence 99986655444444444443332 246679999987664
No 147
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.60 E-value=43 Score=36.07 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=60.9
Q ss_pred HHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHH
Q 001804 486 DAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSV 565 (1011)
Q Consensus 486 eA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~V 565 (1011)
.||..+++-+...+.++++- .+...+...+.......+|||.-|--.+-....... ...+++.++.++.+.+..|
T Consensus 147 raA~~t~~difs~ln~~i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt---p~~~L~~L~~~~~~~n~r~ 221 (334)
T KOG2933|consen 147 RAACMTLADIFSSLNNSIDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT---PQKLLRKLIPILQHSNPRV 221 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC---hHHHHHHHHHHHhhhchhh
Confidence 45566666666666655543 455555555544333445999998888877766443 3456777778888889999
Q ss_pred HHHHHHHHHHhhhhc
Q 001804 566 RLAACRSLCSHIEDA 580 (1011)
Q Consensus 566 r~~A~~aL~~~~~~~ 580 (1011)
|..||.++.+++...
T Consensus 222 r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 222 RAKAALCFSRCVIRL 236 (334)
T ss_pred hhhhhccccccceec
Confidence 999999888877654
No 148
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=69.52 E-value=57 Score=41.70 Aligned_cols=174 Identities=14% Similarity=0.120 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHHhhhHh----hcCCCCh-HHHHHHHhhHhhhccC-CCchhHHHHHHHH-HHhhhccCCcchHHHHHHHH
Q 001804 482 LLLKDAAYGAAAYVYYE----LSNYLSF-KDWFNGALSLDLSNDH-PNMHIIHRKVAII-LGQWVSEIKDDTKRAVYCAL 554 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~----l~~~~~~-~~~l~~~ll~~l~~~~-~~~~~lR~ra~~~-lg~~~~~~~~~~~~~~~~~l 554 (1011)
..+|.+|-.++-.++.. +...++. .+++...+.+.....+ --..+-+-++.|. .|-+. .+ ..+.++.+
T Consensus 747 ~~errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~~vf~s~~~~m~s~l---~~--~~~~l~~l 821 (1549)
T KOG0392|consen 747 SFERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSFEVFNSLAPLMHSFL---HP--LGSLLPRL 821 (1549)
T ss_pred HHHhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhHHHHHHHHHhhhhhh---hh--hhhhhhHH
Confidence 35677777777766644 2223332 1222222222222111 1112445555552 22221 11 44566777
Q ss_pred HhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchHH
Q 001804 555 IKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYAN 633 (1011)
Q Consensus 555 l~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~ 633 (1011)
..++..++..||.+|++|+..+.... ..+. ..-.++.++.+++..+.-..+......+..+..... .+.||..
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~--~~e~----m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~ 895 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSA--TRET----MATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNP 895 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHH--HHHH----HHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccce
Confidence 77788899999999999999887653 1222 233445555555544332323323344444444444 4789988
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcC
Q 001804 634 KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALG 668 (1011)
Q Consensus 634 ~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~ 668 (1011)
-|+++|..... ++....|.+.-++++.++.-++
T Consensus 896 Llv~pllr~ms--d~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 896 LLVVPLLRRMS--DQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred eehhhhhcccc--cchHHHHHHHHHHHHHHhcccc
Confidence 88888776553 3345567777788887777654
No 149
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.28 E-value=44 Score=41.15 Aligned_cols=197 Identities=14% Similarity=0.181 Sum_probs=113.9
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhhcC------CCccc---c-ccchHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 001804 549 AVYCALIKLLMDKDLSVRLAACRSLCSHIEDAN------FSERD---F-TDLLPICWDSCFKLVEEVQEFDSKVQVLNLI 618 (1011)
Q Consensus 549 ~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~------~~~~~---l-~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l 618 (1011)
.+..-++.+|.+++ +--.|+.++.-++.|.+ +..+. . +-+..+|+..|...+. ......|-..+.++
T Consensus 815 ~ia~klld~Ls~~~--~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 815 EIAEKLLDLLSGPS--TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-TAPGSQKHNYLEAL 891 (1030)
T ss_pred hHHHHHHHhcCCcc--ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-cCCccchhHHHHHH
Confidence 34444556665533 23456677776664431 00100 0 1244556666666666 33345566688999
Q ss_pred HHHHHhhc-c-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchh
Q 001804 619 SILIGHVS-E-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNL 696 (1011)
Q Consensus 619 ~~ii~~~~-e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l 696 (1011)
+-++.++. + +.|....|.|.|.+-..- .+...+.+.++|+..++.-.++--......++|.+-..-...+....-.
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~--~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~V 969 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSM--PDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVV 969 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCC--CccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHH
Confidence 99999999 6 789999999988775432 3556677788888887776665433444667776544433222112457
Q ss_pred hhhHHHHHHHHHhcCCC--CCHHHHhhHhHHHHHHHhchhhHHH-HHHHHHHHHhcc
Q 001804 697 LEDSMLLWEATISHAPV--MVPQLLAYFPCLVEIMERSFDHLQV-AINIIEGYIILG 750 (1011)
Q Consensus 697 ~e~~l~L~~~l~~~~~~--~~~~l~~lf~~l~~~l~~~~~~l~~-~~~il~~yi~lg 750 (1011)
.++||..+.++++..|. .-|.--.....|.+++.+.--.+|. +.++=.+|..+|
T Consensus 970 R~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 970 REDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred HHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 89999999999987663 2122223444455555554333332 333334454444
No 150
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.72 E-value=41 Score=40.67 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc--cc-------cchHH---
Q 001804 566 RLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS--EV-------IPYAN--- 633 (1011)
Q Consensus 566 r~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~--ei-------~p~~~--- 633 (1011)
|-.|+++|+.|...+. .+....-++++++.|- ..+...|....+++++-.++.+-. ++ ..+..
T Consensus 40 RR~A~rgLKa~srkYR--~~Vga~Gmk~li~vL~---~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ia 114 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYR--EEVGAQGMKPLIQVLQ---RDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIA 114 (970)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHcccHHHHHHHh---hccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHH
Confidence 7889999999988762 3333344455554432 244445555567777776664442 11 11122
Q ss_pred -------HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcch---hh----hHHHHHHhhcCCCCCCcchhhhh
Q 001804 634 -------KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNC---YS----MLLPILRRGIDINSPDELNLLED 699 (1011)
Q Consensus 634 -------~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~---~~----~~~Pvi~~~l~~~~~~~~~l~e~ 699 (1011)
..++.|...|++. +-.+|...+..++.++..-+..-... .| .++.+++.+-+ -.-.+
T Consensus 115 e~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE-------~IRNe 185 (970)
T KOG0946|consen 115 EQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE-------PIRNE 185 (970)
T ss_pred HHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh-------hhchh
Confidence 2333445566543 45567777888888777766531111 11 22222222221 23456
Q ss_pred HHHHHHHHHhcCCCCCH--HHHhhHhHHHHHHH
Q 001804 700 SMLLWEATISHAPVMVP--QLLAYFPCLVEIME 730 (1011)
Q Consensus 700 ~l~L~~~l~~~~~~~~~--~l~~lf~~l~~~l~ 730 (1011)
++-|+..+++..+.+.. ..-..|..|+.+++
T Consensus 186 ~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 186 AILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred HHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 66666666665554321 11235555555554
No 151
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=67.22 E-value=2e+02 Score=31.60 Aligned_cols=130 Identities=15% Similarity=0.213 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcC-CCC-cchh---hhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCC--CCHHHHhhHhHHHHH
Q 001804 656 LLIALRNFVVALG-YQS-HNCY---SMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV--MVPQLLAYFPCLVEI 728 (1011)
Q Consensus 656 ~l~~l~~l~~a~~-~~~-~~~~---~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~--~~~~l~~lf~~l~~~ 728 (1011)
+..+++.+..++. ..+ ..+. ..+.--+.+|+++.=|.. .-.-|||....+.+..++ ...++.-..|-+++.
T Consensus 28 ~is~L~kL~k~lq~~~~~~~~IP~k~~v~krLaqCL~P~LPsG--VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl 105 (307)
T PF04118_consen 28 YISFLGKLLKALQNSNNQFPYIPHKLQVSKRLAQCLNPALPSG--VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPL 105 (307)
T ss_pred HHHHHHHHHHHHhccCCCCceeCcHHHHHHHHHHhcCCCCChH--HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHH
Confidence 5667777777777 222 1122 356677889998766654 346888888888887653 333433334445555
Q ss_pred HHh-chhhHHHHHHHHHHHHhc-chhhhhhhhHHHHHHHHHHhhcCc---cchhHhhHHHHHHHHHHhC
Q 001804 729 MER-SFDHLQVAINIIEGYIIL-GGTDFLNMHASCVAKLLDLVVGNV---NDKGLLIILPVIDMLIQCF 792 (1011)
Q Consensus 729 l~~-~~~~l~~~~~il~~yi~l-g~~~~l~~~~~~l~~~~~~~l~~~---~~~~~~~~~~l~e~ll~~~ 792 (1011)
+.. +...-+..+.+++.|++- |+ . ..+.+..++..++.-+ +.+.+..+.+++|.+-...
T Consensus 106 ~~~asi~Vkp~lL~i~e~~~lpL~~-~----L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v 169 (307)
T PF04118_consen 106 FSYASIQVKPQLLDIYEKYYLPLGP-A----LRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAV 169 (307)
T ss_pred HHHHHHhhHHHHHHHHHHHhcCccH-H----HHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhc
Confidence 665 345556889999999863 33 2 2233334444444222 2333445666666665544
No 152
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.19 E-value=3e+02 Score=33.61 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=61.8
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHH
Q 001804 514 SLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPI 593 (1011)
Q Consensus 514 l~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~ 593 (1011)
-.+|+.|+. ++|.-+.-++.+.- .++...++++.+..||.+++.-||-.|.-|+-++...+ +.+.|=.|.
T Consensus 105 RkDLQHPNE---yiRG~TLRFLckLk---E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~----~~L~pDape 174 (948)
T KOG1058|consen 105 RKDLQHPNE---YIRGSTLRFLCKLK---EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF----EHLIPDAPE 174 (948)
T ss_pred hhhccCchH---hhcchhhhhhhhcC---cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhh----hhhcCChHH
Confidence 456776766 89998887665543 47899999999999999999999999999998887653 477788888
Q ss_pred HHHHHHH
Q 001804 594 CWDSCFK 600 (1011)
Q Consensus 594 il~~L~~ 600 (1011)
++..++.
T Consensus 175 Li~~fL~ 181 (948)
T KOG1058|consen 175 LIESFLL 181 (948)
T ss_pred HHHHHHH
Confidence 8877653
No 153
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.84 E-value=83 Score=34.00 Aligned_cols=175 Identities=11% Similarity=0.073 Sum_probs=94.2
Q ss_pred CchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHH---hhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHH
Q 001804 479 TPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGA---LSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALI 555 (1011)
Q Consensus 479 ~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~---ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll 555 (1011)
+.+|-.+=-++..+-+++..=.+.+ ...|... ++.+++++.. =|-+.||-+++-..+..+..... .+..++
T Consensus 99 s~dW~~~vdgLn~irrLs~fh~e~l--~~~L~~vii~vvkslKNlRS---~VsraA~~t~~difs~ln~~i~~-~ld~lv 172 (334)
T KOG2933|consen 99 SDDWEDKVDGLNSIRRLSEFHPESL--NPMLHEVIIAVVKSLKNLRS---AVSRAACMTLADIFSSLNNSIDQ-ELDDLV 172 (334)
T ss_pred hHHHHHHhhhHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHhcChHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4689988888998888875411111 1223333 3566766543 37788999988877644332222 333333
Q ss_pred hhc-c---CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c-c-
Q 001804 556 KLL-M---DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E-V- 628 (1011)
Q Consensus 556 ~~L-~---d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e-i- 628 (1011)
..| . +.+.-||..|-.||..++++. .+. .++..|....+.... .....-.-+....+.+.| + +
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~v--tp~-------~~L~~L~~~~~~~n~-r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNHV--TPQ-------KLLRKLIPILQHSNP-RVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhcc--ChH-------HHHHHHHHHHhhhch-hhhhhhhccccccceeccccchh
Confidence 333 2 345569999999999999875 342 334444444444321 112222333444555666 3 3
Q ss_pred cchHHHHHHHHHHHHh-----hccccchHHHHHHHHHHHHHHHcCC
Q 001804 629 IPYANKLVQFFQKVWE-----ESSGESLLQIQLLIALRNFVVALGY 669 (1011)
Q Consensus 629 ~p~~~~L~~~L~~lw~-----~~~~~~~~~~~~l~~l~~l~~a~~~ 669 (1011)
.+|...+.+.+.+-.. ..++....+....+++.+-..++..
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~~~~~~~v~~~~~~lv~~ 288 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFVRLELKEVLKTAQELVED 288 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHHHHhHHHHHHHhhhhcch
Confidence 4566666666544211 1122344555555555554444443
No 154
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.62 E-value=59 Score=37.27 Aligned_cols=121 Identities=10% Similarity=0.163 Sum_probs=85.2
Q ss_pred chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHh
Q 001804 545 DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGH 624 (1011)
Q Consensus 545 ~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~ 624 (1011)
.....+|..+.+...|++..+|-.||+.|.+.... .++...-|-+.++..++.-+-.-...+.....+.++..+.+.
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~---~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~ 330 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASG---APDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK 330 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhcc---CcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHh
Confidence 45677888888888899999999999988887664 356677777777777765443332345555567777777777
Q ss_pred hc-c-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC
Q 001804 625 VS-E-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 625 ~~-e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~ 670 (1011)
.. . +.+|...+.-.+.++|...++ -+|.+.+..++.+..-.|..
T Consensus 331 ~~~~~l~~~~l~ialrlR~l~~se~~--~~R~aa~~Lfg~L~~l~g~~ 376 (533)
T KOG2032|consen 331 ASNDDLESYLLNIALRLRTLFDSEDD--KMRAAAFVLFGALAKLAGGG 376 (533)
T ss_pred hhhcchhhhchhHHHHHHHHHHhcCh--hhhhhHHHHHHHHHHHcCCC
Confidence 77 3 889988888889999975433 34445566666666655553
No 155
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.27 E-value=45 Score=40.00 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHh-hhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 481 GLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLD-LSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 481 ~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~-l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
+...|.+++++++...-+-.+..- ...|++- .+|.+. =|||.|...+|-..-. +|+. ...++.+|.
T Consensus 532 dpilR~~Gm~t~alAy~GTgnnka-----ir~lLh~aVsD~nD---DVrRaAVialGFVl~~-dp~~----~~s~V~lLs 598 (929)
T KOG2062|consen 532 DPILRYGGMYTLALAYVGTGNNKA-----IRRLLHVAVSDVND---DVRRAAVIALGFVLFR-DPEQ----LPSTVSLLS 598 (929)
T ss_pred chhhhhhhHHHHHHHHhccCchhh-----HHHhhcccccccch---HHHHHHHHHheeeEec-Chhh----chHHHHHHh
Confidence 457777777777766544332221 1223332 344443 3888888888865432 2333 344555665
Q ss_pred -CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHH
Q 001804 560 -DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQ 637 (1011)
Q Consensus 560 -d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~ 637 (1011)
+-+.-||..||.||.-+|-.-+ ..+. ...+++++.--.... +.-.+-++..|.-...+ ..|-...+-.
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG-~~eA-i~lLepl~~D~~~fV--------RQgAlIa~amIm~Q~t~~~~pkv~~frk 668 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTG-LKEA-INLLEPLTSDPVDFV--------RQGALIALAMIMIQQTEQLCPKVNGFRK 668 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCC-cHHH-HHHHhhhhcChHHHH--------HHHHHHHHHHHHHhcccccCchHHHHHH
Confidence 4477899999999998875432 1111 112233222211111 11144555556555554 7888888888
Q ss_pred HHHHHHhhccccchHHHHH
Q 001804 638 FFQKVWEESSGESLLQIQL 656 (1011)
Q Consensus 638 ~L~~lw~~~~~~~~~~~~~ 656 (1011)
.|.++..+--++.+.+.+.
T Consensus 669 ~l~kvI~dKhEd~~aK~GA 687 (929)
T KOG2062|consen 669 QLEKVINDKHEDGMAKFGA 687 (929)
T ss_pred HHHHHhhhhhhHHHHHHHH
Confidence 8887776555566666553
No 156
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=66.03 E-value=1.9e+02 Score=30.95 Aligned_cols=143 Identities=14% Similarity=0.156 Sum_probs=84.5
Q ss_pred HHHHHHhhccCCC-h---HHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhh
Q 001804 550 VYCALIKLLMDKD-L---SVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHV 625 (1011)
Q Consensus 550 ~~~~ll~~L~d~~-~---~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~ 625 (1011)
.++-+++.+.+++ . .--..+|.+|...++..+ .|.+..++..+-+ +++ .+.+-.+-.++..+-+.+
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~------~~~La~il~~ya~--~~f--r~~~dfl~~v~~~l~~~f 181 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG------LPNLARILSSYAK--GRF--RDKDDFLSQVVSYLREAF 181 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC------CccHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHHHh
Confidence 3444455554433 1 233466788888886532 2344445444332 233 333333444445554444
Q ss_pred ccccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHH
Q 001804 626 SEVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWE 705 (1011)
Q Consensus 626 ~ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~ 705 (1011)
. -.|..+++..|..+.++. ..-++.+++.++..++..+.-..+.-.+.+.|+.+..-. ++..+|++++.
T Consensus 182 ~--P~~~~~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t-------~~~~eAL~VLd 250 (262)
T PF14225_consen 182 F--PDHEFQILTFLLGLLENG--PPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQT-------DLWMEALEVLD 250 (262)
T ss_pred C--chhHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCC-------ccHHHHHHHHH
Confidence 3 124556666666666542 346788899999999999877655444567777766543 46789999999
Q ss_pred HHHhcCCC
Q 001804 706 ATISHAPV 713 (1011)
Q Consensus 706 ~l~~~~~~ 713 (1011)
.++..+.+
T Consensus 251 ~~v~~s~s 258 (262)
T PF14225_consen 251 EIVTRSGS 258 (262)
T ss_pred HHHhhccc
Confidence 98877653
No 157
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=65.82 E-value=1.3e+02 Score=34.69 Aligned_cols=257 Identities=12% Similarity=0.147 Sum_probs=114.5
Q ss_pred chhHHHHHHHHHHHhhhHh-----hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCC---cchHHHHH
Q 001804 480 PGLLLKDAAYGAAAYVYYE-----LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIK---DDTKRAVY 551 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~-----l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~---~~~~~~~~ 551 (1011)
++|.+-.-+|-.+...-.. ..+++|. -+...|+..+.+++| -=|.....++-++.+++. +-.+..+.
T Consensus 102 ~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~--~fi~~Ll~l~~S~D~---rER~~lk~~l~~iy~k~~~~r~~Ir~~i~ 176 (409)
T PF01603_consen 102 PSWPHLQLVYEILLRFIESPPFDPAKKYIDQ--KFIKKLLELFDSPDP---RERDYLKTILHRIYGKFPNLRSFIRKSIN 176 (409)
T ss_dssp TTHHHHHHHHHHHHHHHTSTT--CCTTTS-H--HHHHHHHHTTTSSTH---HHHHHHHHHHHHHHHH-TTTHHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHHHCccccHHHHHcCH--HHHHHHHHHcCCCCH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3466666666555554322 1123332 344456677777766 355555666666544322 23345555
Q ss_pred HHHHhhccCCChHHHH-HHHHHHHHhhhhcCCCcccccc-chHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcccc
Q 001804 552 CALIKLLMDKDLSVRL-AACRSLCSHIEDANFSERDFTD-LLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVI 629 (1011)
Q Consensus 552 ~~ll~~L~d~~~~Vr~-~A~~aL~~~~~~~~~~~~~l~p-~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~ 629 (1011)
..+.+.+.+.+...-+ ....-+.++++.+ .. .+.+ +..-+...++-|.+.-....---.+..++..++++-..
T Consensus 177 ~~~~~fi~e~~~~~gI~elLeil~sii~gf--~~-plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~-- 251 (409)
T PF01603_consen 177 NIFYRFIYETERHNGIAELLEILGSIINGF--AV-PLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPS-- 251 (409)
T ss_dssp HHHHHHHHTTS--STHHHHHHHHHHHHTT----S-S--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GG--
T ss_pred HHHHHHhcCcccccCHHHHHHHHHHHHhcc--CC-CCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--
Confidence 5555555432222211 2223344444432 11 1111 11112222222222111111112256666666655442
Q ss_pred chHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHcCCC-CcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHH
Q 001804 630 PYANKLVQFFQKVWEESSG-ESLLQIQLLIALRNFVVALGYQ-SHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEAT 707 (1011)
Q Consensus 630 p~~~~L~~~L~~lw~~~~~-~~~~~~~~l~~l~~l~~a~~~~-~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l 707 (1011)
.+..++..|...|-.... +.. -.|.-+..++..+++. ...+...+...+..|++. .+....|.|+.+|..-
T Consensus 252 -l~~~~i~~llk~WP~t~s~Kev---~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S---~h~qVAErAl~~w~n~ 324 (409)
T PF01603_consen 252 -LAEPVIKGLLKHWPKTNSQKEV---LFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISS---PHFQVAERALYFWNNE 324 (409)
T ss_dssp -GHHHHHHHHHHHS-SS-HHHHH---HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTS---SSHHHHHHHHGGGGSH
T ss_pred -hHHHHHHHHHHhCCCCCchhHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHCCH
Confidence 345666777778864321 111 1345555666555532 122334556666777764 5667889999998744
Q ss_pred HhcCCCCCHHHHhhHhHHHHHHHh-c----hhhHH-HHHHHHHHHHhcchhhh
Q 001804 708 ISHAPVMVPQLLAYFPCLVEIMER-S----FDHLQ-VAINIIEGYIILGGTDF 754 (1011)
Q Consensus 708 ~~~~~~~~~~l~~lf~~l~~~l~~-~----~~~l~-~~~~il~~yi~lg~~~~ 754 (1011)
-.. .-++..--.++|.+++.+.. + ...++ .+...+..+.-.++..|
T Consensus 325 ~~~-~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 325 YFL-SLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp HHH-HHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred HHH-HHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 111 00111123366666666643 1 23333 33344444444454443
No 158
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=65.37 E-value=35 Score=39.67 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=48.1
Q ss_pred HhhHhhhccCCCchhHHHHHHHHHHhhhccC---CcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhh
Q 001804 512 ALSLDLSNDHPNMHIIHRKVAIILGQWVSEI---KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIED 579 (1011)
Q Consensus 512 ~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~---~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~ 579 (1011)
+++..+.+++. -||.|+|-.+...+..+ ++.....+..-+...+-|.++.||..|..+|..+-+.
T Consensus 95 h~lRg~eskdk---~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~ 162 (885)
T COG5218 95 HLLRGTESKDK---KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEM 162 (885)
T ss_pred HHHhcccCcch---hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence 44555555554 59999999999998853 3444555555555666699999999999999988754
No 159
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=65.06 E-value=1.1e+02 Score=34.41 Aligned_cols=132 Identities=10% Similarity=0.108 Sum_probs=81.6
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c
Q 001804 549 AVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E 627 (1011)
Q Consensus 549 ~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e 627 (1011)
..|.-+...+.+.+..-|..|...| -.|.+ -..+.||+-..+..-+..--.- .......++..+..++.+=. .
T Consensus 178 ~yf~~It~a~~~~~~~~r~~aL~sL---~tD~g--l~~LlPyf~~fI~~~v~~n~~~-nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 178 LYFEEITEALVGSNEEKRREALQSL---RTDPG--LQQLLPYFVRFIAEGVTVNLDQ-NLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh---ccCCC--chhhhhHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHhcCCCCc
Confidence 3455555555555666666555444 44432 3456666666555443322110 12334446677777777666 5
Q ss_pred ccchHHHHHHHHHHHHh------h--ccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhc
Q 001804 628 VIPYANKLVQFFQKVWE------E--SSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGI 686 (1011)
Q Consensus 628 i~p~~~~L~~~L~~lw~------~--~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l 686 (1011)
+.||..+|+|.+....- . .++++-+|.-.-++|..++...++.-..+.+.+.-.+..++
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l 318 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKAL 318 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Confidence 89999999998775331 1 24567888888899999999999876667777765555444
No 160
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=64.64 E-value=20 Score=31.52 Aligned_cols=57 Identities=21% Similarity=0.108 Sum_probs=42.9
Q ss_pred ccccccHHHHHHHHHHHccc---chHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHh
Q 001804 435 EKLRPCAEALYIVLFENHSQ---LLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYE 498 (1011)
Q Consensus 435 ~~~r~~a~~~l~~l~~~~~~---~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~ 498 (1011)
|.+|--|+.++..++.+|++ .+-|-+...+.+... +....+..+.||+.+++.++..
T Consensus 20 ~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~-------d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 20 WALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALL-------DPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999899998873 455667776666664 1234678999999999988654
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.92 E-value=3.5e+02 Score=33.25 Aligned_cols=295 Identities=16% Similarity=0.159 Sum_probs=152.7
Q ss_pred cccHHHHHHHHHHHcccchH----HHHHHHHHHHHhcCCCCCCCCCchhHHHHH---HHHHHHhhh-Hh-hc---CCCCh
Q 001804 438 RPCAEALYIVLFENHSQLLG----PVVVSILQEAMNGCSTSVTEITPGLLLKDA---AYGAAAYVY-YE-LS---NYLSF 505 (1011)
Q Consensus 438 r~~a~~~l~~l~~~~~~~l~----~~l~~~l~~~~~~~~~~~~~~~~~~~~keA---~l~alg~~a-~~-l~---~~~~~ 505 (1011)
|..|...+-.++..||..+. +.+++.++.--. + ++ ..+.+ .+..+..-- +. +. ...++
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~--------D-~E-~ik~~LdTl~il~~~dd~~~v~dds~qsdd~ 109 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYM--------D-PE-IIKYALDTLLILTSHDDSPEVMDDSTQSDDL 109 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccC--------C-HH-HHHHHHHHHHHHHhcCcchhhcccchhhhHH
Confidence 66777788899999996554 444444443111 1 11 12222 222221110 00 11 12356
Q ss_pred HHHHHHHhh----------HhhhccCCCchhHHHHHHHHHHhhhccCCcchH------HHHHHHHHhhccCCChHHHHHH
Q 001804 506 KDWFNGALS----------LDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTK------RAVYCALIKLLMDKDLSVRLAA 569 (1011)
Q Consensus 506 ~~~l~~~ll----------~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~------~~~~~~ll~~L~d~~~~Vr~~A 569 (1011)
..|+...++ ..+..- ++ .||+-+.-+++.....-+++.. |.-..-++.+|.|+.-|||=.|
T Consensus 110 g~~iae~fik~qd~I~lll~~~e~~--DF-~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~ 186 (970)
T KOG0946|consen 110 GLWIAEQFIKNQDNITLLLQSLEEF--DF-HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEA 186 (970)
T ss_pred HHHHHHHHHcCchhHHHHHHHHHhh--ch-hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhH
Confidence 667666542 222212 22 4899999999888775554433 3345556777789999999999
Q ss_pred HHHHHHhhhhcCCCcccccc--chHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cc--cchH--HHHHHHHHHH
Q 001804 570 CRSLCSHIEDANFSERDFTD--LLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EV--IPYA--NKLVQFFQKV 642 (1011)
Q Consensus 570 ~~aL~~~~~~~~~~~~~l~p--~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei--~p~~--~~L~~~L~~l 642 (1011)
..-|..++.+.. .++- -.+.+++.||.++.+-...+.-..+.+||..+-.-+. .+ ..|+ ..-+|.|.++
T Consensus 187 iLlL~eL~k~n~----~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~kl 262 (970)
T KOG0946|consen 187 ILLLSELVKDNS----SIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKL 262 (970)
T ss_pred HHHHHHHHccCc----hHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhh
Confidence 999999988742 3222 2378899999999876544554556777776665444 21 1122 1223333322
Q ss_pred Hh--hccc-c----chHHHHHHHHHHHHHHHcC---CCCcchh--------hhHHHHHHhhcCCCCCCcchhhhhHHHHH
Q 001804 643 WE--ESSG-E----SLLQIQLLIALRNFVVALG---YQSHNCY--------SMLLPILRRGIDINSPDELNLLEDSMLLW 704 (1011)
Q Consensus 643 w~--~~~~-~----~~~~~~~l~~l~~l~~a~~---~~~~~~~--------~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~ 704 (1011)
.. ...| + +--|...+-++-.+++++- ..+..-+ ..++-++..++-.+. ...+..-+++--.
T Consensus 263 L~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~-vp~dIltesiitv 341 (970)
T KOG0946|consen 263 LSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG-VPADILTESIITV 341 (970)
T ss_pred cCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC-CcHhHHHHHHHHH
Confidence 21 1111 1 1233344444445555532 2221111 234444444443211 3346666666666
Q ss_pred HHHHhcC------------CCCCHHHHhhHhHHHHHHHh--chhhHHHHHHHHHHHHhcc
Q 001804 705 EATISHA------------PVMVPQLLAYFPCLVEIMER--SFDHLQVAINIIEGYIILG 750 (1011)
Q Consensus 705 ~~l~~~~------------~~~~~~l~~lf~~l~~~l~~--~~~~l~~~~~il~~yi~lg 750 (1011)
..++++. |.+.|+-..+.-++...+.. .++.--.++.|+.+|..-.
T Consensus 342 AevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 342 AEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 6666652 11221222222223333322 4555557778888888764
No 162
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.02 E-value=88 Score=39.81 Aligned_cols=164 Identities=18% Similarity=0.100 Sum_probs=99.4
Q ss_pred chhHHHHHHHHHHHhhh---Hh-hcCCCChHHHHHHHhhHhhh-ccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHH
Q 001804 480 PGLLLKDAAYGAAAYVY---YE-LSNYLSFKDWFNGALSLDLS-NDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCAL 554 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a---~~-l~~~~~~~~~l~~~ll~~l~-~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~l 554 (1011)
.+.-.+-||..|+|..- .. ...+. +.|+.-+. +|.| ++|.-+.-.+|-++-.+ |....+.-+.+
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa~fces~l-------~llftimeksp~p---~IRsN~VvalgDlav~f-pnlie~~T~~L 1003 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISAEFCESHL-------PLLFTIMEKSPSP---RIRSNLVVALGDLAVRF-PNLIEPWTEHL 1003 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHH-------HHHHHHHhcCCCc---eeeecchheccchhhhc-ccccchhhHHH
Confidence 44578899999999753 22 22222 23444554 5666 79988888888877644 34455556666
Q ss_pred HhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchHH
Q 001804 555 IKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYAN 633 (1011)
Q Consensus 555 l~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~ 633 (1011)
...|.|.+.-||.+|...|..++=+. --..+.|++..--. +..- + ..|+.+++.|= |+.--.+
T Consensus 1004 y~rL~D~~~~vRkta~lvlshLILnd---miKVKGql~eMA~c----l~D~---~------~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1004 YRRLRDESPSVRKTALLVLSHLILND---MIKVKGQLSEMALC----LEDP---N------AEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHhh---hhHhcccHHHHHHH----hcCC---c------HHHHHHHHHHHHHhhhccc
Confidence 67789999999999999999987431 11334444433222 2111 1 23555665554 5544456
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC
Q 001804 634 KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 634 ~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~ 670 (1011)
.|.+.||.+..+-.|..+-..+.-..|..++..+.++
T Consensus 1068 ~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1068 TIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred chhhhchHHHHhhccCcccchhhHHHHHHHHHHhccc
Confidence 7777777766554444444444556666666666665
No 163
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=59.62 E-value=3.3e+02 Score=31.44 Aligned_cols=259 Identities=12% Similarity=0.160 Sum_probs=125.4
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchH-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHh
Q 001804 546 TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLP-ICWDSCFKLVEEVQEFDSKVQVLNLISILIGH 624 (1011)
Q Consensus 546 ~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~-~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~ 624 (1011)
.+.-+|+.++..+.+.+.. . .+.|+. ..+..|+.+++.-+..| +..+-+++-.+..+
T Consensus 106 HL~~vY~il~~~i~~~~~~-------------------~--~~~~i~~~fi~~Ll~l~~S~D~rE-R~~lk~~l~~iy~k 163 (409)
T PF01603_consen 106 HLQLVYEILLRFIESPPFD-------------------P--AKKYIDQKFIKKLLELFDSPDPRE-RDYLKTILHRIYGK 163 (409)
T ss_dssp HHHHHHHHHHHHHTSTT---------------------C--CTTTS-HHHHHHHHHTTTSSTHHH-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCcccc-------------------H--HHHHcCHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHH
Confidence 4567888888877654421 1 223333 56788888888776666 33477777777777
Q ss_pred hccccchHH-HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC-Ccc----hhhhHHHHHHhhcCCCCCCcchhhh
Q 001804 625 VSEVIPYAN-KLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ-SHN----CYSMLLPILRRGIDINSPDELNLLE 698 (1011)
Q Consensus 625 ~~ei~p~~~-~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~-~~~----~~~~~~Pvi~~~l~~~~~~~~~l~e 698 (1011)
+....++.- .+...|.+...+.+ .+.-...+|+.+++++.+.... .+. +...++|+... +....|..
T Consensus 164 ~~~~r~~Ir~~i~~~~~~fi~e~~-~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~------~~~~~y~~ 236 (409)
T PF01603_consen 164 FPNLRSFIRKSINNIFYRFIYETE-RHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKS------PHLSSYHQ 236 (409)
T ss_dssp -TTTHHHHHHHHHHHHHHHHHTTS---STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGS------TGGGGTHH
T ss_pred hhhhHHHHHHHHHHHHHHHhcCcc-cccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcC------CcHHHHHH
Confidence 765555543 34444555444333 3334467899999999876531 111 22344454321 12233444
Q ss_pred hHHHHHHHHHhcCCCCCHH----HHhhHhHHHHHHHhchhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCcc
Q 001804 699 DSMLLWEATISHAPVMVPQ----LLAYFPCLVEIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVN 774 (1011)
Q Consensus 699 ~~l~L~~~l~~~~~~~~~~----l~~lf~~l~~~l~~~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~ 774 (1011)
.-..+....+..-++.+.. +...+|.- .-....-++..+..+++. .++.+|.. ....++..+...+....
T Consensus 237 ~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t--~s~Kev~FL~el~~il~~---~~~~~f~~-i~~~lf~~la~ci~S~h 310 (409)
T PF01603_consen 237 QLSYCVVQFLEKDPSLAEPVIKGLLKHWPKT--NSQKEVLFLNELEEILEV---LPPEEFQK-IMVPLFKRLAKCISSPH 310 (409)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS---HHHHHHHHHHHHHHHTT-----HHHHHH-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHhCCCC--CchhHHHHHHHHHHHHHh---cCHHHHHH-HHHHHHHHHHHHhCCCC
Confidence 4444444444444433322 22334420 001123355554445442 34454443 56677777777665422
Q ss_pred chhHhhHHHHHHHHHHhCCCC-c----hhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChHHHHHHh
Q 001804 775 DKGLLIILPVIDMLIQCFPIQ-V----PPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQLT 848 (1011)
Q Consensus 775 ~~~~~~~~~l~e~ll~~~~~~-~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~~~~~~l 848 (1011)
- ++.|.++...... . ...-..+++.++..+....+.+.. ..++.....++.-+.=.||..|-+..
T Consensus 311 ~-------qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn--~~Vr~~a~~vl~~l~~~d~~lf~~~~ 380 (409)
T PF01603_consen 311 F-------QVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWN--QTVRNLAQNVLKILMEMDPKLFDKCA 380 (409)
T ss_dssp H-------HHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SS--TTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred H-------HHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 2 1233333332211 1 111222344444444333334554 24565666666666667888887643
No 164
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=57.97 E-value=1.3e+02 Score=34.00 Aligned_cols=150 Identities=12% Similarity=0.108 Sum_probs=81.3
Q ss_pred HHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCC---cchHHHHHHHHHhhcc-----CCChHHHHHHHHHHHHhhhhc
Q 001804 509 FNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIK---DDTKRAVYCALIKLLM-----DKDLSVRLAACRSLCSHIEDA 580 (1011)
Q Consensus 509 l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~---~~~~~~~~~~ll~~L~-----d~~~~Vr~~A~~aL~~~~~~~ 580 (1011)
+-.++..-+.+.+. =+.......+|.|+..-+ .=.-..+++-++.+|. |-|..++-++++||+++.--.
T Consensus 316 ~l~~~~sw~~S~d~---~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv 392 (604)
T KOG4500|consen 316 FLDFLESWFRSDDS---NLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV 392 (604)
T ss_pred HHHHHHHHhcCCch---hHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC
Confidence 33445556665544 266778889999987311 1112345555555553 567888889999999986321
Q ss_pred CCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcccc-chH--HHHHHHHHHHHhhccccchHHHHHH
Q 001804 581 NFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVI-PYA--NKLVQFFQKVWEESSGESLLQIQLL 657 (1011)
Q Consensus 581 ~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~-p~~--~~L~~~L~~lw~~~~~~~~~~~~~l 657 (1011)
.+...+.| ..+.+..+..++-.+ ......++.+++-+++..+.+. ..+ ..++..|. -|..+.|..-+...-.
T Consensus 393 -~nka~~~~--aGvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv-~Wsks~D~aGv~gESn 467 (604)
T KOG4500|consen 393 -SNKAHFAP--AGVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLV-DWSKSPDFAGVAGESN 467 (604)
T ss_pred -Cchhhccc--cchHHHHHHHHHhcC-CcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHH-HhhhCCccchhhhhhh
Confidence 12334544 223444444333322 2333347777877776544110 111 12222222 3887777766666666
Q ss_pred HHHHHHHHH
Q 001804 658 IALRNFVVA 666 (1011)
Q Consensus 658 ~~l~~l~~a 666 (1011)
+.+..++.-
T Consensus 468 Rll~~lIkH 476 (604)
T KOG4500|consen 468 RLLLGLIKH 476 (604)
T ss_pred HHHHHHHHh
Confidence 666666654
No 165
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=57.92 E-value=6.9e+02 Score=34.68 Aligned_cols=229 Identities=14% Similarity=0.135 Sum_probs=116.7
Q ss_pred hHHHHHHHHHHhhhccCCc---chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccc----cchHHHHHHH
Q 001804 526 IIHRKVAIILGQWVSEIKD---DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFT----DLLPICWDSC 598 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~~~---~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~----p~l~~il~~L 598 (1011)
=+|..+.-++.+....... .-...++..+-....+++..+-..|-.++..+++++ | ..+. .....++..|
T Consensus 1198 eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~-f--~~l~~~~~~~F~DlV~cL 1274 (1780)
T PLN03076 1198 EIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREY-F--PYITETETTTFTDCVNCL 1274 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhh-h--hhccccchhHHHHHHHHH
Confidence 4899999999888663221 234667776665556666655556777777666653 1 1111 2333444444
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHhhcc--cc-----------------------------ch---HHHHHHHHHHHHh
Q 001804 599 FKLVEEVQEFDSKVQVLNLISILIGHVSE--VI-----------------------------PY---ANKLVQFFQKVWE 644 (1011)
Q Consensus 599 ~~ll~~~~~~e~~~~l~~~l~~ii~~~~e--i~-----------------------------p~---~~~L~~~L~~lw~ 644 (1011)
....+.-...+.-+..++.+..++..+-+ +. .. ..--++.|..+-.
T Consensus 1275 ~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~ 1354 (1780)
T PLN03076 1275 IAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSE 1354 (1780)
T ss_pred HHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHH
Confidence 43333221122222234445544343310 10 00 0001111111111
Q ss_pred -hccccchHHHHHHHHHHHHHHHcCCCCcc------hhhhHHHHHHhhcC---C---C---------CC---C-cchhhh
Q 001804 645 -ESSGESLLQIQLLIALRNFVVALGYQSHN------CYSMLLPILRRGID---I---N---------SP---D-ELNLLE 698 (1011)
Q Consensus 645 -~~~~~~~~~~~~l~~l~~l~~a~~~~~~~------~~~~~~Pvi~~~l~---~---~---------~~---~-~~~l~e 698 (1011)
-.+++.-+|.+.+++|-.++.+.|..... +...+.|+++..-. . . +. + ...+.+
T Consensus 1355 l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~e 1434 (1780)
T PLN03076 1355 LSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYE 1434 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHH
Confidence 12456778999999999999999987432 44689999876421 1 0 00 0 112222
Q ss_pred hHHHHHHHHHhc----CCCCCHHHHhhHhHHHHHHHhchh-hHHHHHHHHHHHHhcchhhhhhh
Q 001804 699 DSMLLWEATISH----APVMVPQLLAYFPCLVEIMERSFD-HLQVAINIIEGYIILGGTDFLNM 757 (1011)
Q Consensus 699 ~~l~L~~~l~~~----~~~~~~~l~~lf~~l~~~l~~~~~-~l~~~~~il~~yi~lg~~~~l~~ 757 (1011)
.....+..++.- ...+.+-|-.++.++..|+.+..+ ..+....+|...+..+...|-..
T Consensus 1435 T~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~ 1498 (1780)
T PLN03076 1435 TCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDE 1498 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 222222222221 122344344566667777766554 34566778888888777766543
No 166
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=57.91 E-value=65 Score=37.04 Aligned_cols=77 Identities=18% Similarity=0.076 Sum_probs=54.5
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
++...|.+++.++|.-. .-++ +.+.+.++++++ .||+.|+.++|..... +..+ .+...+.
T Consensus 129 ~~p~vR~aal~al~~r~-----~~~~-----~~L~~~L~d~d~---~Vra~A~raLG~l~~~---~a~~----~L~~al~ 188 (410)
T TIGR02270 129 SEPPGRAIGLAALGAHR-----HDPG-----PALEAALTHEDA---LVRAAALRALGELPRR---LSES----TLRLYLR 188 (410)
T ss_pred CChHHHHHHHHHHHhhc-----cChH-----HHHHHHhcCCCH---HHHHHHHHHHHhhccc---cchH----HHHHHHc
Confidence 34577888888887622 1122 246677888877 8999999999997642 2222 2445588
Q ss_pred CCChHHHHHHHHHHHHh
Q 001804 560 DKDLSVRLAACRSLCSH 576 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~ 576 (1011)
|.+..||..|+.++..+
T Consensus 189 d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 189 DSDPEVRFAALEAGLLA 205 (410)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 99999999999998654
No 167
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=57.79 E-value=20 Score=26.85 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhh
Q 001804 89 EEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFD 124 (1011)
Q Consensus 89 e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d 124 (1011)
.+.+|+|+-+++.|..++...|.++..+|+.|.+.+
T Consensus 3 ~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs 38 (46)
T PF01465_consen 3 INLEYLKNVLLQFLESREPSEREQLLPVIATLLKFS 38 (46)
T ss_dssp HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--
T ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCC
Confidence 467899999999999888889999999999988754
No 168
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=56.31 E-value=1.3e+02 Score=36.96 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhccCCcc----hHHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHH
Q 001804 527 IHRKVAIILGQWVSEIKDD----TKRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKL 601 (1011)
Q Consensus 527 lR~ra~~~lg~~~~~~~~~----~~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~l 601 (1011)
=|-.++-++|.|+..-++- ...++|..+++||. |.+..|-..|..+|..++-.. +..+.|||+.++..+..+
T Consensus 84 ~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i---p~~l~~~L~~Lf~If~Rl 160 (668)
T PF04388_consen 84 YRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI---PSSLGPHLPDLFNIFGRL 160 (668)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHH
Confidence 5778999999998853332 23578899999997 999999999999999998875 568899999999988888
Q ss_pred H
Q 001804 602 V 602 (1011)
Q Consensus 602 l 602 (1011)
+
T Consensus 161 ~ 161 (668)
T PF04388_consen 161 L 161 (668)
T ss_pred H
Confidence 7
No 169
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=55.98 E-value=1.2e+02 Score=36.02 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHhhc----CCCh---HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCC
Q 001804 11 IYTLLANSMSRDESIRKPAEAALSQSES----RPGF---CSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDS 83 (1011)
Q Consensus 11 l~~~L~~s~s~d~~~r~~Ae~~L~~~~~----~pgf---~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~ 83 (1011)
|.-+|....|++..+|+..-+-|+++.+ .|.. ...|++.+.+++. ..-||.++.||++.++.|
T Consensus 25 L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~--s~~vrnfsliyi~~g~~R-------- 94 (501)
T PF13001_consen 25 LPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSD--SSFVRNFSLIYIEMGFDR-------- 94 (501)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCC--chHHHHHHHHHHHHhhhc--------
Confidence 4456666678999999999999998876 2443 6788999888763 478999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhHHhh
Q 001804 84 VGISNEEKVHLRQKLLTHLRE 104 (1011)
Q Consensus 84 ~~i~~e~K~~Ir~~ll~~L~~ 104 (1011)
++.++|..+=-.++.++..
T Consensus 95 --l~~~e~~~llP~ll~~is~ 113 (501)
T PF13001_consen 95 --LDDEERRELLPSLLKGISK 113 (501)
T ss_pred --CCHHHHHHHHHHHHHhhcc
Confidence 7889999999999988874
No 170
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=55.89 E-value=3.7e+02 Score=33.84 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=103.4
Q ss_pred CchhHHHHHHHHHHHhhhHhhc--CCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc---chHHHHHHH
Q 001804 479 TPGLLLKDAAYGAAAYVYYELS--NYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD---DTKRAVYCA 553 (1011)
Q Consensus 479 ~~~~~~keA~l~alg~~a~~l~--~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~---~~~~~~~~~ 553 (1011)
+.+|+.|-.++-.+...-+.-. ...++...+...+--.+.|.+- .+-.-++-++...+..+.+ .+...+++.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~---~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~ 340 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANI---NVVMLAAQILELIAKKLRPLFRKYAKNVFPS 340 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcch---hHHHHHHHHHHHHHHhcchhhHHHHHhhcch
Confidence 4789998888888776554322 1222222222222223344443 3667788888888776543 456778889
Q ss_pred HHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccc---
Q 001804 554 LIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIP--- 630 (1011)
Q Consensus 554 ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p--- 630 (1011)
+++.+.+.-.-+|-.+..++..+++.. . +..++......++.- ..-.+..+...++......+...+
T Consensus 341 lld~lkekk~~l~d~l~~~~d~~~ns~-----~----l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~ 410 (815)
T KOG1820|consen 341 LLDRLKEKKSELRDALLKALDAILNST-----P----LSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKE 410 (815)
T ss_pred HHHHhhhccHHHHHHHHHHHHHHHhcc-----c----HHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchh
Confidence 999998888888888777777776632 1 222333333333322 112233345555555555552222
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC
Q 001804 631 YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ 670 (1011)
Q Consensus 631 ~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~ 670 (1011)
-...+++.+...-+ +-+.-+|.+.++++..+....|..
T Consensus 411 t~~~l~p~~~~~~~--D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 411 TVKTLVPHLIKHIN--DTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hHHHHhHHHhhhcc--CCcHHHHHHHHHHHHHHHHHhhHH
Confidence 23455555544322 235668888999999999998874
No 171
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.05 E-value=29 Score=42.14 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCC
Q 001804 483 LLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKD 562 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~ 562 (1011)
..+-..+.|+|.++..- .++. +.+++ ....+..+.+|..|+|.+.+.+...+...+..+++...+- +.+
T Consensus 461 ~~~~~~LkaLGN~g~~~--~i~~---l~~~l----~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~--~e~ 529 (574)
T smart00638 461 EEIQLYLKALGNAGHPS--SIKV---LEPYL----EGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNR--AEP 529 (574)
T ss_pred hheeeHHHhhhccCChh--HHHH---HHHhc----CCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCC--CCC
Confidence 45677899999877431 1111 33333 2222233489999999999988766666666666655332 346
Q ss_pred hHHHHHHHHHHH
Q 001804 563 LSVRLAACRSLC 574 (1011)
Q Consensus 563 ~~Vr~~A~~aL~ 574 (1011)
.-||++|+.+|-
T Consensus 530 ~EvRiaA~~~lm 541 (574)
T smart00638 530 PEVRMAAVLVLM 541 (574)
T ss_pred hHHHHHHHHHHH
Confidence 669999988764
No 172
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=54.04 E-value=32 Score=40.87 Aligned_cols=142 Identities=11% Similarity=0.141 Sum_probs=92.4
Q ss_pred CchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCC--ChHHHHHHHHHH---HHhhhhcCCCccccccchHHHHHH
Q 001804 523 NMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDK--DLSVRLAACRSL---CSHIEDANFSERDFTDLLPICWDS 597 (1011)
Q Consensus 523 ~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~--~~~Vr~~A~~aL---~~~~~~~~~~~~~l~p~l~~il~~ 597 (1011)
-.+.+|.|+.-.+++= .......+.+.+.+...|.+. +.++|..|..-+ ...+.+. ....+.+.-+.|+.+
T Consensus 295 a~~~lq~kIL~~L~kS--~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~--~~~~l~~l~~~i~~~ 370 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKS--VIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHI--SPQILKLLRPVILSQ 370 (501)
T ss_pred CCHHHHHHHHHHHHHh--HHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhc--CHHHHHHHHHHHHhc
Confidence 3447898888888772 222344567778888888755 667787776666 4445543 345566666777777
Q ss_pred HHHHHh------H-hhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCC
Q 001804 598 CFKLVE------E-VQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGY 669 (1011)
Q Consensus 598 L~~ll~------~-~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~ 669 (1011)
+..+++ . ....+.+...|++|+.++.+... +..- -.++..|..-. .++..-++.++-+|+++++.++..
T Consensus 371 g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL--~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 371 GWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSL--EDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred CccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHh--hCcchHHHHHHHHHHHHHHHHHhc
Confidence 777773 1 12234455689999999999885 4221 23333333222 334677888899999999999887
Q ss_pred CC
Q 001804 670 QS 671 (1011)
Q Consensus 670 ~~ 671 (1011)
.+
T Consensus 448 ~~ 449 (501)
T PF13001_consen 448 LP 449 (501)
T ss_pred cc
Confidence 54
No 173
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=53.18 E-value=16 Score=25.87 Aligned_cols=28 Identities=29% Similarity=0.213 Sum_probs=23.3
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhh
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~ 577 (1011)
..+.++++|.+++..++..|+.+|+++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4667788888788999999999999875
No 174
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=53.16 E-value=88 Score=32.13 Aligned_cols=111 Identities=12% Similarity=0.054 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCchhHHHHHH-HHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHh
Q 001804 459 VVVSILQEAMNGCSTSVTEITPGLLLKDAA-YGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQ 537 (1011)
Q Consensus 459 ~l~~~l~~~~~~~~~~~~~~~~~~~~keA~-l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~ 537 (1011)
..++.+..... .-++|-.-|.. ...+|.....- + .+.+.+..-+.++++ +.||.++-++-.
T Consensus 85 ~~~~~~~~~~~--------~~~~W~~~D~~~~~~~~~~~~~~----~---~~~~~~~~W~~s~~~---w~rR~~~v~~~~ 146 (213)
T PF08713_consen 85 EDLELLEKWLP--------DIDNWATCDSLCSKLLGPLLKKH----P---EALELLEKWAKSDNE---WVRRAAIVMLLR 146 (213)
T ss_dssp HHHHHHHHCCC--------CCCCHHHHHHHTHHHHHHHHHHH----G---GHHHHHHHHHHCSSH---HHHHHHHHCTTT
T ss_pred HHHHHHHHHhc--------cCCcchhhhHHHHHHHHHHHHhh----H---HHHHHHHHHHhCCcH---HHHHHHHHHHHH
Confidence 34556666653 24679888986 66666653221 1 145566677778776 677666656555
Q ss_pred hhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHH
Q 001804 538 WVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPI 593 (1011)
Q Consensus 538 ~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~ 593 (1011)
|... .....++..+...+.|++.-||.+.+.+|+.+.... ++...+|+..
T Consensus 147 ~~~~---~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~---~~~v~~~l~~ 196 (213)
T PF08713_consen 147 YIRK---EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD---PDEVLEFLQK 196 (213)
T ss_dssp HGGG---CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT----HHHHHHHHHH
T ss_pred HHHh---cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC---HHHHHHHHHH
Confidence 5444 667889999999999999999999999999886542 4444444443
No 175
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=52.56 E-value=74 Score=37.05 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcccCChhhHHHHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccc---hHHHHHHHHHHHHh
Q 001804 393 ERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQL---LGPVVVSILQEAMN 469 (1011)
Q Consensus 393 ~~~~~l~~~li~~~l~l~~~dle~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---l~~~l~~~l~~~~~ 469 (1011)
..+..++.++|.+.||..++. ++- |.+|--|+.++..++.+|++. +-+-++..+.....
T Consensus 288 ~L~PSvlTCvVsk~l~~~p~~----------------dnh--waLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 288 QLVPSVLTCVVSKNLCLRPEL----------------DNH--WALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALL 349 (576)
T ss_pred HHhhHHHHhhhhhhccCCccc----------------cch--HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 356678888999999887632 232 368878888888888888743 44555555555554
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHhhhH
Q 001804 470 GCSTSVTEITPGLLLKDAAYGAAAYVYY 497 (1011)
Q Consensus 470 ~~~~~~~~~~~~~~~keA~l~alg~~a~ 497 (1011)
+....|-..++++..+.....
T Consensus 350 -------D~~~~~st~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 350 -------DNKKPLSTHYGAIAGLSELGH 370 (576)
T ss_pred -------CCCCCchhhhhHHHHHHHhhh
Confidence 234568889998888777664
No 176
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=52.18 E-value=3.6e+02 Score=29.68 Aligned_cols=188 Identities=17% Similarity=0.206 Sum_probs=90.1
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhh-hh--HHHHHHHHHHHHHhhc
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEF-DS--KVQVLNLISILIGHVS 626 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~-e~--~~~l~~~l~~ii~~~~ 626 (1011)
.|..+++++..+|..++..|+..+..++...+ .........++..++..+...-.. ++ ....+.+++.+.. ..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~---~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~ 181 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGP---KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SK 181 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTT---T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC---ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cc
Confidence 56667777777899999999999999986532 122222245666666666552111 11 1112333333321 00
Q ss_pred cccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHH
Q 001804 627 EVIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEA 706 (1011)
Q Consensus 627 ei~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~ 706 (1011)
+.+. . .|+ .+.+..+..++...+. ..+.....-.++-.+=+|.
T Consensus 182 ~~R~---~-------f~~---------~~~v~~l~~iL~~~~~-----------------~~~~~~~Ql~Y~~ll~lWl- 224 (312)
T PF03224_consen 182 EYRQ---V-------FWK---------SNGVSPLFDILRKQAT-----------------NSNSSGIQLQYQALLCLWL- 224 (312)
T ss_dssp HHHH---H-------HHT---------HHHHHHHHHHHH--------------------------HHHHHHHHHHHHHH-
T ss_pred hhHH---H-------HHh---------cCcHHHHHHHHHhhcc-----------------cCCCCchhHHHHHHHHHHH-
Confidence 0111 0 222 1222222222221110 0001111234445555665
Q ss_pred HHhcCCCCCHHHH--hhHhHHHHHHHhc--hhhHHHHHHHHHHHHhcchhhhhhh-hHHHHHHHHHHhhc-CccchhHh
Q 001804 707 TISHAPVMVPQLL--AYFPCLVEIMERS--FDHLQVAINIIEGYIILGGTDFLNM-HASCVAKLLDLVVG-NVNDKGLL 779 (1011)
Q Consensus 707 l~~~~~~~~~~l~--~lf~~l~~~l~~~--~~~l~~~~~il~~yi~lg~~~~l~~-~~~~l~~~~~~~l~-~~~~~~~~ 779 (1011)
+.+. +.+.+.+. .++|.+..++..+ .-.+|-++.++.|++..++..+... ....+..++..+.. ...|++..
T Consensus 225 LSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ 302 (312)
T PF03224_consen 225 LSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLT 302 (312)
T ss_dssp HTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred HhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence 2211 21222332 2888888888864 4578999999999999988765432 34556666666653 34555543
No 177
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=51.89 E-value=2.1e+02 Score=32.46 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhcc-ccchHHHHHHH-HHHHHhhccccchHHHHHHHHHHHHHHHcCCCC------------cc-hhh
Q 001804 612 VQVLNLISILIGHVSE-VIPYANKLVQF-FQKVWEESSGESLLQIQLLIALRNFVVALGYQS------------HN-CYS 676 (1011)
Q Consensus 612 ~~l~~~l~~ii~~~~e-i~p~~~~L~~~-L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~------------~~-~~~ 676 (1011)
....+.+..+++++++ +.+-....++. |.+.-++...++..+.+.+-.++++........ .. |..
T Consensus 229 ~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~ 308 (370)
T PF08506_consen 229 RAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQ 308 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHH
Confidence 3466777778877773 54433333332 332222333456667777777766655442211 01 124
Q ss_pred hHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHhchhhH
Q 001804 677 MLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMERSFDHL 736 (1011)
Q Consensus 677 ~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~~~~~l 736 (1011)
.+.|-++ . +...+..+-.+|+..+...-...+ .+.+.++||.+..++..+..-+
T Consensus 309 ~v~peL~-~---~~~~~piLka~aik~~~~Fr~~l~--~~~l~~~~~~l~~~L~~~~~vv 362 (370)
T PF08506_consen 309 HVLPELQ-P---DVNSHPILKADAIKFLYTFRNQLP--KEQLLQIFPLLVNHLQSSSYVV 362 (370)
T ss_dssp HTCHHHH-----SS-S-HHHHHHHHHHHHHHGGGS---HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HhHHHhc-c---cCCCCcchHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHhCCCCcch
Confidence 5566665 1 122455788888888876654433 2456689999999998654333
No 178
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=50.84 E-value=2.1e+02 Score=32.92 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=61.5
Q ss_pred cCCChhhhHHHHHHHHHhhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHH
Q 001804 19 MSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGISNEEKVHLRQKL 98 (1011)
Q Consensus 19 ~s~d~~~r~~Ae~~L~~~~~~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~~e~K~~Ir~~l 98 (1011)
.+++.++|..+=+.|. +-+.|+....|...+.+. ++.+|..+.=.+.+ +. ..+ -..+
T Consensus 96 ~d~~~~vr~aaa~ALg-~i~~~~a~~~L~~~L~~~----~p~vR~aal~al~~------r~------~~~------~~~L 152 (410)
T TIGR02270 96 QAGPEGLCAGIQAALG-WLGGRQAEPWLEPLLAAS----EPPGRAIGLAALGA------HR------HDP------GPAL 152 (410)
T ss_pred cCCCHHHHHHHHHHHh-cCCchHHHHHHHHHhcCC----ChHHHHHHHHHHHh------hc------cCh------HHHH
Confidence 3455556666666663 334455566666666443 24566544433322 10 000 1145
Q ss_pred HhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHH
Q 001804 99 LTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMIL 155 (1011)
Q Consensus 99 l~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L 155 (1011)
..+|.+++..||.....+++.|. +++..+.|...+++.|+.....|...+
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~-------~~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELP-------RRLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhc-------cccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 55566777888877777777765 345677777777777776666666555
No 179
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=50.01 E-value=6.1e+02 Score=31.70 Aligned_cols=344 Identities=12% Similarity=0.068 Sum_probs=165.7
Q ss_pred HHhcCHHhhhhhcccccccccccccHHHHHHHHHHHcccc--hHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHH
Q 001804 416 EWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQL--LGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAA 493 (1011)
Q Consensus 416 ~we~Dpee~~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~--l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg 493 (1011)
.+...+..|..-..+|. +++|-.|...+..+...|... +...+.+.+-+.. ...+|+.+..+-...-
T Consensus 273 ~~s~v~~~~~~L~~Ddq--dsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~---------~d~~~~v~~~~~~~~~ 341 (759)
T KOG0211|consen 273 VKSEVLPTLIQLLRDDQ--DSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAV---------EDGSWRVSYMVADKFS 341 (759)
T ss_pred HHhhccHHHhhhhhcch--hhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHh---------cChhHHHHHHHhhhhh
Confidence 34555555553211121 367777777677777666633 2222222222222 2357888887665555
Q ss_pred hhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCC----cch-HHHHHHHHHhhccCCChHHHHH
Q 001804 494 YVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIK----DDT-KRAVYCALIKLLMDKDLSVRLA 568 (1011)
Q Consensus 494 ~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~----~~~-~~~~~~~ll~~L~d~~~~Vr~~ 568 (1011)
-++..+.+.. ....+.+.....++++.. -.|..++-=.+.+....+ ++. ...+++.+..+..|++..||.+
T Consensus 342 ~L~~~~~~~~-~~~~~~~~~~~l~~~~~~---e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a 417 (759)
T KOG0211|consen 342 ELSSAVGPSA-TRTQLVPPVSNLLKDEEW---EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSA 417 (759)
T ss_pred hHHHHhcccc-CcccchhhHHHHhcchhh---hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHH
Confidence 5444444311 111123334445555543 245555555555555333 222 4556888888888999999988
Q ss_pred HHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhhc
Q 001804 569 ACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E-VIPYANKLVQFFQKVWEES 646 (1011)
Q Consensus 569 A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e-i~p~~~~L~~~L~~lw~~~ 646 (1011)
.+.-.-......+ .+..+.+.+|..+..+-.... +.+..+.+.+..+....+ . +.-+.+.+.+.+..+-..
T Consensus 418 ~a~~~~~~~p~~~-k~~ti~~llp~~~~~l~de~~-----~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d- 490 (759)
T KOG0211|consen 418 LASVITGLSPILP-KERTISELLPLLIGNLKDEDP-----IVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED- 490 (759)
T ss_pred HhccccccCccCC-cCcCccccChhhhhhcchhhH-----HHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc-
Confidence 8776665555443 123444455544444333222 223334444444444333 2 444566666666554221
Q ss_pred cccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcch-hhhhHHHHHHHHHhcCCCCCHHHHhhHhHH
Q 001804 647 SGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELN-LLEDSMLLWEATISHAPVMVPQLLAYFPCL 725 (1011)
Q Consensus 647 ~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~-l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l 725 (1011)
..+..+.++++.+-.++.-.|.. -+-+...++...-+ ++++| ..+-+.--+..+++..++ .-....+.|.+
T Consensus 491 -~~wRvr~ail~~ip~la~q~~~~--~~~~~~~~l~~~~l----~d~v~~Ir~~aa~~l~~l~~~~G~-~w~~~~~i~k~ 562 (759)
T KOG0211|consen 491 -LLWRVRLAILEYIPQLALQLGVE--FFDEKLAELLRTWL----PDHVYSIREAAARNLPALVETFGS-EWARLEEIPKL 562 (759)
T ss_pred -hhHHHHHHHHHHHHHHHHhhhhH--HhhHHHHHHHHhhh----hhhHHHHHHHHHHHhHHHHHHhCc-chhHHHhhHHH
Confidence 14677888888888888777632 12233333333322 23322 333333334444433331 11111233333
Q ss_pred HHHHHh-chhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHhC
Q 001804 726 VEIMER-SFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCF 792 (1011)
Q Consensus 726 ~~~l~~-~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~~ 792 (1011)
+....+ +.-+=.+++..+..++-.....+. ...+.-++..+..+....-...+++.+..++...
T Consensus 563 L~~~~q~~y~~R~t~l~si~~la~v~g~ei~---~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L 627 (759)
T KOG0211|consen 563 LAMDLQDNYLVRMTTLFSIHELAEVLGQEIT---CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLL 627 (759)
T ss_pred HHHhcCcccchhhHHHHHHHHHHHHhccHHH---HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhc
Confidence 333222 233334445555544444333322 2344444555544433333445667777766554
No 180
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=49.84 E-value=65 Score=31.78 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhCCCCc-----hhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhh
Q 001804 113 LAVLISKIARFDYPREW-----PQLFSVLAQQLQAADVLTSHRIFMILFRTLKELS 163 (1011)
Q Consensus 113 ~a~~i~~Ia~~d~P~~W-----P~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~ 163 (1011)
++.+++.+....=|+.| ++++|.+..+++|....+...|+..|..+++.+.
T Consensus 46 lvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 46 LVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred HHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 46666667655567778 6899999999999988888899999998888654
No 181
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.46 E-value=62 Score=32.73 Aligned_cols=67 Identities=12% Similarity=0.080 Sum_probs=54.8
Q ss_pred HHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhh
Q 001804 96 QKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELS 163 (1011)
Q Consensus 96 ~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~ 163 (1011)
..+++....++..+|.....+++.|.|..+-+=| +.+|.++.+..++++.....|...+..+.+.+.
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELILRQGLVNPK-QCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 3456666679999999999999999999985544 689999999988888888889887777776543
No 182
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=49.09 E-value=78 Score=35.86 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=63.6
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcccc
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVI 629 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~ 629 (1011)
.++-+...+-+.+..||.+|.+.++.++.+..+-.....=+++-++-.-+.--++. ..| +.+.+..+..+++.-+...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~-~~E-R~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKN-DVE-REQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCC-hHH-HHHHHHHHHHHHHhcCCcc
Confidence 34444434444449999999999999997743211111222333322222211222 113 5678888888888754333
Q ss_pred chHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 001804 630 PYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVV 665 (1011)
Q Consensus 630 p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~ 665 (1011)
.+-..++..+..+-++. +..++..+++|+..++.
T Consensus 104 ~~~~~vvralvaiae~~--~D~lr~~cletL~El~l 137 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHE--DDRLRRICLETLCELAL 137 (371)
T ss_pred cCCHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHh
Confidence 33456677777776653 34566778888877655
No 183
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.34 E-value=2.6e+02 Score=30.95 Aligned_cols=173 Identities=11% Similarity=0.068 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHHhhhHh------hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc--CC-cchHHHHHH
Q 001804 482 LLLKDAAYGAAAYVYYE------LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE--IK-DDTKRAVYC 552 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~------l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~--~~-~~~~~~~~~ 552 (1011)
.-.++=+-.|+|.++-. +...- +-+.+.|+..+.++.+ -++..|...++..+.. .. +-...--++
T Consensus 222 ~dvqyycttaisnIaVd~~~Rk~Laqae---p~lv~~Lv~Lmd~~s~---kvkcqA~lALrnlasdt~Yq~eiv~ag~lP 295 (550)
T KOG4224|consen 222 LDVQYYCTTAISNIAVDRRARKILAQAE---PKLVPALVDLMDDGSD---KVKCQAGLALRNLASDTEYQREIVEAGSLP 295 (550)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhcc---cchHHHHHHHHhCCCh---HHHHHHHHHHhhhcccchhhhHHHhcCCch
Confidence 34577788888888733 22222 2366777777777777 6899999999988763 11 111222366
Q ss_pred HHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccch
Q 001804 553 ALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPY 631 (1011)
Q Consensus 553 ~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~ 631 (1011)
.++.+|+++-.+.-++...+++++--+.. ....+.. ...+.-|+.++.-.+.+|.+....+++..++....+ ..-+
T Consensus 296 ~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~d--agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i 372 (550)
T KOG4224|consen 296 LLVELLQSPMGPLILASVACIRNISIHPL-NEVLIAD--AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVI 372 (550)
T ss_pred HHHHHHhCcchhHHHHHHHHHhhcccccC-cccceec--ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHH
Confidence 77888888888888888888887643321 1111110 123444667777676777888889999999876663 3221
Q ss_pred -HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH
Q 001804 632 -ANKLVQFFQKVWEESSGESLLQIQLLIALRNFVV 665 (1011)
Q Consensus 632 -~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~ 665 (1011)
...-+|.|..+.-. ..-.++..+-.|++.+..
T Consensus 373 ~esgAi~kl~eL~lD--~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 373 RESGAIPKLIELLLD--GPVSVQSEISACIAQLAL 405 (550)
T ss_pred hhcCchHHHHHHHhc--CChhHHHHHHHHHHHHHh
Confidence 22233444443321 122344445555555443
No 184
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=47.10 E-value=28 Score=26.07 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhh
Q 001804 90 EKVHLRQKLLTHLREENNQVAQMLAVLISKIARFD 124 (1011)
Q Consensus 90 ~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d 124 (1011)
+.+|+|+-+++.|...+.. |.++..+|+.+.+.+
T Consensus 3 n~eYLKNVll~fl~~~e~~-r~~ll~vi~tlL~fs 36 (46)
T smart00755 3 NFEYLKNVLLQFLTLRESE-RETLLKVISTVLQLS 36 (46)
T ss_pred cHHHHHHHHHHHhccCcch-HHHHHHHHHHHhCCC
Confidence 4679999999999877665 999999998887754
No 185
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=47.07 E-value=3e+02 Score=27.26 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHHhHHhhc--hHHHHHHHHHHHHHHHhh--hCC-CCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhh
Q 001804 93 HLRQKLLTHLREE--NNQVAQMLAVLISKIARF--DYP-REWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELS 163 (1011)
Q Consensus 93 ~Ir~~ll~~L~~~--~~~ir~~~a~~i~~Ia~~--d~P-~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~ 163 (1011)
.||..++.+|.+. ....-+.++.+++.+|.. +++ +.|++|.+.+.... ++++ .+|+ +|+..+.
T Consensus 3 eikplLIsCL~~q~~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~----~IF~~L~ 70 (174)
T PF04510_consen 3 EIKPLLISCLTMQETKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAF----HIFICLP 70 (174)
T ss_pred chHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHH----HHHHhCC
Confidence 4788888998642 233445555555555544 346 78999998887765 3333 4666 3455554
No 186
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.06 E-value=90 Score=26.99 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=40.4
Q ss_pred hchHHHHHHHHHHHHHHHhhhCC---CCchhhHHHHHHHhccCCHHHHhHHHHHHH
Q 001804 104 EENNQVAQMLAVLISKIARFDYP---REWPQLFSVLAQQLQAADVLTSHRIFMILF 156 (1011)
Q Consensus 104 ~~~~~ir~~~a~~i~~Ia~~d~P---~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~ 156 (1011)
.++..||..+-.||..|+..-+. ..||.++..+-.....++......|+.++.
T Consensus 29 ~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 29 NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 36778888888888888775443 689999999998888776666667776543
No 187
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.80 E-value=4.2e+02 Score=32.95 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=85.0
Q ss_pred HHhhcc-CCChHHHHHHHHHHHHhhhhcCCCcccccc-chHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-c--
Q 001804 554 LIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTD-LLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-V-- 628 (1011)
Q Consensus 554 ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p-~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i-- 628 (1011)
++..|+ ..|.--|+.|..-|+..+-.. ..+.+.- -+..++..|+.|++.-...|.++....+|.-+.|.+.+ +
T Consensus 172 LL~gL~~~~Des~Qleal~Elce~L~mg--nEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~ 249 (1051)
T KOG0168|consen 172 LLQGLQAESDESQQLEALTELCEMLSMG--NEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAI 249 (1051)
T ss_pred HHHhccccCChHHHHHHHHHHHHHHhhc--chhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhe
Confidence 444455 347778888777776665322 1222222 24566777788887766778888888999999888873 2
Q ss_pred -cch--HHHHHHHHHH-----HHhhc----------cccchHHHHHH-HHHHHHHHHcCCCCcchhhhHHHHHHhhcCCC
Q 001804 629 -IPY--ANKLVQFFQK-----VWEES----------SGESLLQIQLL-IALRNFVVALGYQSHNCYSMLLPILRRGIDIN 689 (1011)
Q Consensus 629 -~p~--~~~L~~~L~~-----lw~~~----------~~~~~~~~~~l-~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~ 689 (1011)
..| +..++..|.- +-+++ .....++.+.| .|++. +.-.. ......++.+...|+..-
T Consensus 250 vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsy-lDFFS---i~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 250 VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSY-LDFFS---IHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHH-HHHHH---HHHHHHHHHHHHHHHhcC
Confidence 111 1222222211 11110 01122222222 11111 11111 012245677777787766
Q ss_pred CCCcchhhhhHHHHHHHHHhcCC
Q 001804 690 SPDELNLLEDSMLLWEATISHAP 712 (1011)
Q Consensus 690 ~~~~~~l~e~~l~L~~~l~~~~~ 712 (1011)
.++..+++-|++=|+..++++..
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D 348 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQD 348 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhcc
Confidence 66777888999999999998864
No 188
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=45.71 E-value=80 Score=29.99 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcC-CC------------ccccccch
Q 001804 525 HIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDAN-FS------------ERDFTDLL 591 (1011)
Q Consensus 525 ~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~-~~------------~~~l~p~l 591 (1011)
+++|.+.|-++...+...=|+.-+.+++-+++.++. +..-.......|+.+.++.. +. .+.+....
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 479999999999988743233344455666666654 23334445556666655542 11 12355556
Q ss_pred HHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHHHhhc
Q 001804 592 PICWDSCFKLVEEVQE---FDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 592 ~~il~~L~~ll~~~~~---~e~~~~l~~~l~~ii~~~~ 626 (1011)
+.+++.+.++++.... .+....++.+++..+.-..
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~ 118 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP 118 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC
Confidence 6677777777766543 3333445666666665433
No 189
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=45.04 E-value=6.6e+02 Score=31.73 Aligned_cols=180 Identities=13% Similarity=0.155 Sum_probs=112.9
Q ss_pred chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHh
Q 001804 545 DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGH 624 (1011)
Q Consensus 545 ~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~ 624 (1011)
+....+-..+..-|.|.+-.=|..|...+...+++.. . ...+-...++..+++....=-+....+....+|..|+..
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~--~-~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAK--K-EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccc--c-ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 3445555566666778888899999988888887642 2 233333334444443322211223334456788888888
Q ss_pred hcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHH
Q 001804 625 VSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLL 703 (1011)
Q Consensus 625 ~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L 703 (1011)
++. ..+|+..+.+.|..... +....++..++.|+-.++.+..- ..+.+.|...+...+|. +-.+...+
T Consensus 326 lr~~~~~~~~~v~p~lld~lk--ekk~~l~d~l~~~~d~~~ns~~l------~~~~~~I~e~lk~knp~---~k~~~~~~ 394 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLK--EKKSELRDALLKALDAILNSTPL------SKMSEAILEALKGKNPQ---IKGECLLL 394 (815)
T ss_pred cchhhHHHHHhhcchHHHHhh--hccHHHHHHHHHHHHHHHhcccH------HHHHHHHHHHhcCCChh---hHHHHHHH
Confidence 884 78898888777665432 23456666666666665553221 35667777777766664 34566677
Q ss_pred HHHHHhcCCC---CCHHHHhhHhHHHHHHHhchhhHHH
Q 001804 704 WEATISHAPV---MVPQLLAYFPCLVEIMERSFDHLQV 738 (1011)
Q Consensus 704 ~~~l~~~~~~---~~~~l~~lf~~l~~~l~~~~~~l~~ 738 (1011)
+...++..+. ..+....+.|.++....|....+|.
T Consensus 395 l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~ 432 (815)
T KOG1820|consen 395 LDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRK 432 (815)
T ss_pred HHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHH
Confidence 7777777652 3455678999998888877766765
No 190
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=44.57 E-value=2e+02 Score=32.64 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=88.1
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhh--hh--hhHHHHHHHHHHHHH
Q 001804 548 RAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQ--EF--DSKVQVLNLISILIG 623 (1011)
Q Consensus 548 ~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~--~~--e~~~~l~~~l~~ii~ 623 (1011)
+++++.+...+.++|.-...+++.|+.+|.... ...+.=.-.+++..|+.++.+-. .. +....++.+++.++-
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D---~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRD---DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc---hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 447888888898888888999999999999753 11222222568888888776521 11 222335666666654
Q ss_pred hhc-c--ccc--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchh---hhHHHHHHhhcCCCCCCcch
Q 001804 624 HVS-E--VIP--YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCY---SMLLPILRRGIDINSPDELN 695 (1011)
Q Consensus 624 ~~~-e--i~p--~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~---~~~~Pvi~~~l~~~~~~~~~ 695 (1011)
-.. + +.| ....|.+.|.- ..+.+...++-++.-++.+.+.-...+. ..+..+++-| .+|++..
T Consensus 391 Pv~nka~~~~aGvteaIL~~lk~------~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Ws---ks~D~aG 461 (604)
T KOG4500|consen 391 PVSNKAHFAPAGVTEAILLQLKL------ASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWS---KSPDFAG 461 (604)
T ss_pred cCCchhhccccchHHHHHHHHHh------cCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhh---hCCccch
Confidence 433 2 333 23334333221 1234444556665555554432111111 1223333443 3568888
Q ss_pred hhhhHHHHHHHHHhcCC
Q 001804 696 LLEDSMLLWEATISHAP 712 (1011)
Q Consensus 696 l~e~~l~L~~~l~~~~~ 712 (1011)
+.-++..++.+++++++
T Consensus 462 v~gESnRll~~lIkHs~ 478 (604)
T KOG4500|consen 462 VAGESNRLLLGLIKHSK 478 (604)
T ss_pred hhhhhhHHHHHHHHhhH
Confidence 88999999999999854
No 191
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=44.46 E-value=1e+02 Score=34.26 Aligned_cols=80 Identities=28% Similarity=0.209 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
+++..|.++..++|.....- ..+-+...+.++.+ .+|..|...+|..-. +..++.++.++.
T Consensus 55 ~~~~vr~~aa~~l~~~~~~~---------av~~l~~~l~d~~~---~vr~~a~~aLg~~~~-------~~a~~~li~~l~ 115 (335)
T COG1413 55 EDLLVRLSAAVALGELGSEE---------AVPLLRELLSDEDP---RVRDAAADALGELGD-------PEAVPPLVELLE 115 (335)
T ss_pred CCHHHHHHHHHHHhhhchHH---------HHHHHHHHhcCCCH---HHHHHHHHHHHccCC-------hhHHHHHHHHHH
Confidence 36778888877776654321 22334556667666 799999998888642 334566666666
Q ss_pred -CCChHHHHHHHHHHHHhhh
Q 001804 560 -DKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 560 -d~~~~Vr~~A~~aL~~~~~ 578 (1011)
|.+..||..|+.+|..+-+
T Consensus 116 ~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 116 NDENEGVRAAAARALGKLGD 135 (335)
T ss_pred cCCcHhHHHHHHHHHHhcCc
Confidence 8999999999999997654
No 192
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=44.04 E-value=3.9e+02 Score=28.00 Aligned_cols=130 Identities=16% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCChhhhHHHHHHHHHhhcCC-----ChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCCHHHHHHH
Q 001804 20 SRDESIRKPAEAALSQSESRP-----GFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGISNEEKVHL 94 (1011)
Q Consensus 20 s~d~~~r~~Ae~~L~~~~~~p-----gf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~~e~K~~I 94 (1011)
..|++.....=..|..+-.+. -+...|......+. ...|..+.-.+=...++..+. . +.-|..+
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~----~~~~~~~~rLl~~lw~~~~r~------f-~~L~~~L 80 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGS----LELRYVALRLLTLLWKANDRH------F-PFLQPLL 80 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCc----hhHHHHHHHHHHHHHHhCchH------H-HHHHHHH
Q ss_pred HHHHHhHHhh-----chHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHh-ccCCHHHHhHHHHHHHHHHHH
Q 001804 95 RQKLLTHLRE-----ENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQL-QAADVLTSHRIFMILFRTLKE 161 (1011)
Q Consensus 95 r~~ll~~L~~-----~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l-~s~~~~~~~~al~~L~~v~k~ 161 (1011)
....++.... ..-......+..+..|.+.+ |+.|+++++.+.+++ +..+...+--++..+..+|+.
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~-p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSR-PDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
No 193
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=43.55 E-value=4.7e+02 Score=28.56 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=47.9
Q ss_pred HHhhHhhh----ccCCCchhHHHHHHHHHHhhhccCCc----ch----HHHHHHHHHhhccCCChHHHHHHHHHHHHhh
Q 001804 511 GALSLDLS----NDHPNMHIIHRKVAIILGQWVSEIKD----DT----KRAVYCALIKLLMDKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 511 ~~ll~~l~----~~~~~~~~lR~ra~~~lg~~~~~~~~----~~----~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~ 577 (1011)
+.+.|.|+ .++. .|+.-+|-.+|+..+.++. +. -..+|+.++.|+...|..|.-+|..+++.+.
T Consensus 81 pnlmpdLQrGLiadda---sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDA---SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hhhhHHHHhcccCCcc---hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 34445554 3444 6899999999999987652 11 3567889999998889999999999988764
No 194
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=43.53 E-value=2.8e+02 Score=33.66 Aligned_cols=112 Identities=17% Similarity=0.118 Sum_probs=67.6
Q ss_pred HHHHHHHHHhhhHhhcCCCChH---HHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc-chHHHHHHHHHhh-cc
Q 001804 485 KDAAYGAAAYVYYELSNYLSFK---DWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD-DTKRAVYCALIKL-LM 559 (1011)
Q Consensus 485 keA~l~alg~~a~~l~~~~~~~---~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~-~~~~~~~~~ll~~-L~ 559 (1011)
+++-++.+-... -|.++.+-+ +-+.++|...+++... .+..++.-.+.-+++.++- -.+..+++.+-++ +.
T Consensus 364 ~~~~l~i~e~md-lL~~Kt~~e~~~~~IlplL~~S~~~~~~---~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~ 439 (700)
T KOG2137|consen 364 KQALLFILENMD-LLKEKTPPEEVKEKILPLLYRSLEDSDV---QIQELALQILPTVAESIDVPFVKQAILPRLKNLAFK 439 (700)
T ss_pred ccchhhHHhhHH-HHHhhCChHHHHHHHHHHHHHHhcCcch---hhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhc
Confidence 455555554432 233333322 2233333444455554 7888999999988886653 3355566655444 34
Q ss_pred CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhh
Q 001804 560 DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFD 609 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e 609 (1011)
..+..|++.+..|+..+++..+ . ..+++.+..+++.+...|
T Consensus 440 tt~~~vkvn~L~c~~~l~q~lD--~-------~~v~d~~lpi~~~~~~~d 480 (700)
T KOG2137|consen 440 TTNLYVKVNVLPCLAGLIQRLD--K-------AAVLDELLPILKCIKTRD 480 (700)
T ss_pred ccchHHHHHHHHHHHHHHHHHH--H-------HHhHHHHHHHHHHhcCCC
Confidence 7899999999999999987652 2 335666666666665545
No 195
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.21 E-value=9.8e+02 Score=32.12 Aligned_cols=112 Identities=13% Similarity=0.124 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHH
Q 001804 41 GFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKI 120 (1011)
Q Consensus 41 gf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~I 120 (1011)
+|-.+|=.|+..-.- ....+|.=|.=++-+.+...=.- -..+ .++..+-+-+.++...||-.+-..+++.
T Consensus 813 sfD~yLk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~v-----L~~~----dvq~~Vh~R~~DssasVREAaldLvGrf 882 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGE-NAIALRTKALKCLSMIVEADPSV-----LSRP----DVQEAVHGRLNDSSASVREAALDLVGRF 882 (1692)
T ss_pred hhHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHh-----hcCH----HHHHHHHHhhccchhHHHHHHHHHHhhh
Confidence 455555555543331 14678887776666555432111 1122 3555555556788889999999999987
Q ss_pred HhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhh
Q 001804 121 ARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELS 163 (1011)
Q Consensus 121 a~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~ 163 (1011)
+-. +|+--++....+.+.+.......+.|++.++..+|++..
T Consensus 883 vl~-~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 883 VLS-IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred hhc-cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 644 255555666666666655556677899999999998754
No 196
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=42.04 E-value=6.2e+02 Score=29.50 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCC---c-chHHHHHHHHHhh
Q 001804 482 LLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIK---D-DTKRAVYCALIKL 557 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~---~-~~~~~~~~~ll~~ 557 (1011)
++.|=++-.|+|.+...+.+ -.....+.+.|++.|++++. .=|--++.++..|+.... + .....+-..+..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~-~~~~~~~~~~L~~~L~S~sa---~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPE-SSLQEIFQPLLLPYLNSPSA---TQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 67889999999999988732 33444566778999999877 667789999999998421 1 1123444444555
Q ss_pred ccCC------C-----hHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc
Q 001804 558 LMDK------D-----LSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 558 L~d~------~-----~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ 626 (1011)
|.++ + .+||-.+-.-+..|.+.--+. ..-.|.++..++.--..-.+. -+-...-.+++...+++.
T Consensus 177 L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~-~~klp~l~~~v~~~~~~~p~~---fsi~~A~~v~~~~~~~l~ 252 (441)
T PF12054_consen 177 LENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVP-PSKLPSLPVVVQGEPEAGPEA---FSIEQAEKVVGEDFEKLK 252 (441)
T ss_pred HcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hhhccccccccccccccCCcc---CCHHHHHHHHHHHHHHHH
Confidence 5421 1 345555555555555543222 233344443333110000000 000001122222222222
Q ss_pred c-ccchH-HHHHHHHHH----HH---hhc-cccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcCC
Q 001804 627 E-VIPYA-NKLVQFFQK----VW---EES-SGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDI 688 (1011)
Q Consensus 627 e-i~p~~-~~L~~~L~~----lw---~~~-~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~~ 688 (1011)
. +.|-. ....+.|-. +- +.. ..+......+..++..-+.+++.-|.++-|++-|+++.+=..
T Consensus 253 ~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnPiIrpLMdSIK~E 324 (441)
T PF12054_consen 253 KSLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNPIIRPLMDSIKRE 324 (441)
T ss_pred HhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHhhcc
Confidence 1 21100 001122211 00 000 123344455777777778888988889999999998877554
No 197
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.68 E-value=7.4e+02 Score=30.26 Aligned_cols=311 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCC
Q 001804 444 LYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPN 523 (1011)
Q Consensus 444 ~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~ 523 (1011)
+++.+.-+-...+...+.+-+..-+. +.+-...-=|+..+|.++.. ++..-+..-+-..|.++. .
T Consensus 96 l~is~L~n~n~dl~klvin~iknDL~---------srn~~fv~LAL~~I~niG~r-----e~~ea~~~DI~KlLvS~~-~ 160 (938)
T KOG1077|consen 96 LFISLLLNENSDLMKLVINSIKNDLS---------SRNPTFVCLALHCIANIGSR-----EMAEAFADDIPKLLVSGS-S 160 (938)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhhhh---------cCCcHHHHHHHHHHHhhccH-----hHHHHhhhhhHHHHhCCc-c
Q ss_pred chhHHHHHHHHHHhhhccCCcchHH-HHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHH
Q 001804 524 MHIIHRKVAIILGQWVSEIKDDTKR-AVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLV 602 (1011)
Q Consensus 524 ~~~lR~ra~~~lg~~~~~~~~~~~~-~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll 602 (1011)
.++||..++.++=+.-...++-..+ .-.+-++++|.|.++.|-.+|.+-+..++... ++...-.++..+..|..+.
T Consensus 161 ~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~---p~~yk~~~~~avs~L~riv 237 (938)
T KOG1077|consen 161 MDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN---PESYKTCLPLAVSRLSRIV 237 (938)
T ss_pred hHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC---CHHHhhhHHHHHHHHHHHH
Q ss_pred hHhhhhhhHHHHHHHHHHHHHhhccc-cc-hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHH
Q 001804 603 EEVQEFDSKVQVLNLISILIGHVSEV-IP-YANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLP 680 (1011)
Q Consensus 603 ~~~~~~e~~~~l~~~l~~ii~~~~ei-~p-~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~P 680 (1011)
......-...--+. + .| ....++..|... ...+++..+..+.+|+..++.-..+-+
T Consensus 238 ~~~~t~~qdYTyy~-----------vP~PWL~vKl~rlLq~~--p~~~D~~~r~~l~evl~~iLnk~~~~~--------- 295 (938)
T KOG1077|consen 238 VVVGTSLQDYTYYF-----------VPAPWLQVKLLRLLQIY--PTPEDPSTRARLNEVLERILNKAQEPP--------- 295 (938)
T ss_pred hhcccchhhceeec-----------CCChHHHHHHHHHHHhC--CCCCCchHHHHHHHHHHHHHhccccCc---------
Q ss_pred HHHhhcCCCCCCcchhhhhHHHHHHHHHhcCCCCCHHHHhhHhHHHHHHHh---chhhHHHHHHHHHHHHhcchhhhhhh
Q 001804 681 ILRRGIDINSPDELNLLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMER---SFDHLQVAINIIEGYIILGGTDFLNM 757 (1011)
Q Consensus 681 vi~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l~~~l~~---~~~~l~~~~~il~~yi~lg~~~~l~~ 757 (1011)
+..++.+..--...|==.-.++.+..+-.+-+..-...|-..+.+ ..-|+.- ++...+....+...
T Consensus 296 ------~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaL-----Esm~~L~ss~~s~d 364 (938)
T KOG1077|consen 296 ------KSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLAL-----ESMCKLASSEFSID 364 (938)
T ss_pred ------cccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhH-----HHHHHHHhccchHH
Q ss_pred hHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHhCCCC-chhHHHHHHHHH
Q 001804 758 HASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQ-VPPLISCSLQKL 807 (1011)
Q Consensus 758 ~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~~~~~-~~~~~~~~l~~l 807 (1011)
.--+-..++-..+.. +.+....-+.++.+--.|+.. +..+++..|+.+
T Consensus 365 avK~h~d~Ii~sLkt--erDvSirrravDLLY~mcD~~Nak~IV~elLqYL 413 (938)
T KOG1077|consen 365 AVKKHQDTIINSLKT--ERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYL 413 (938)
T ss_pred HHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
No 198
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=41.43 E-value=2e+02 Score=27.91 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhH---hhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHH
Q 001804 565 VRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEE---VQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQ 640 (1011)
Q Consensus 565 Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~---~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~ 640 (1011)
|--.+..|+-.++-.. ++..|+|..-.+++--..=+.+ ....+.....+..+..+.++++. +.||+..++....
T Consensus 37 vE~~v~~~~~~lV~KL--nE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~ 114 (153)
T PF08146_consen 37 VESSVISAFVSLVLKL--NEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAV 114 (153)
T ss_pred HHHHHHHHHHHHHHHc--ccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666554 4668888766666654331111 12223344578999999999997 7999999888877
Q ss_pred HHHhh
Q 001804 641 KVWEE 645 (1011)
Q Consensus 641 ~lw~~ 645 (1011)
.+.+.
T Consensus 115 ~~L~~ 119 (153)
T PF08146_consen 115 DLLKQ 119 (153)
T ss_pred HHHHH
Confidence 76653
No 199
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.24 E-value=5.1e+02 Score=31.30 Aligned_cols=64 Identities=16% Similarity=0.058 Sum_probs=50.2
Q ss_pred hHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcC
Q 001804 514 SLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDAN 581 (1011)
Q Consensus 514 l~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~ 581 (1011)
+..+.|.-- =||..|...+++.+. -+|.+-...+..++..++|....||+.|..||..+..+..
T Consensus 379 VhGlEDEf~---EVR~AAV~Sl~~La~-ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~ 442 (823)
T KOG2259|consen 379 VHGLEDEFY---EVRRAAVASLCSLAT-SSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA 442 (823)
T ss_pred eeechHHHH---HHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe
Confidence 445555422 388888888887765 2466778889999999999999999999999999988753
No 200
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=41.12 E-value=53 Score=23.19 Aligned_cols=30 Identities=27% Similarity=0.137 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhcc-CCChHHHHHHHHHHHHh
Q 001804 547 KRAVYCALIKLLM-DKDLSVRLAACRSLCSH 576 (1011)
Q Consensus 547 ~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~ 576 (1011)
.+.+|..+-..-. |+|..||.+|..+|..+
T Consensus 3 l~~l~r~Lk~V~~~D~D~lvr~hA~~~Le~L 33 (36)
T PF10304_consen 3 LEDLYRTLKYVESTDNDDLVREHAQDALEEL 33 (36)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 4556665544443 89999999999999865
No 201
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.84 E-value=35 Score=22.15 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhhc
Q 001804 527 IHRKVAIILGQWVS 540 (1011)
Q Consensus 527 lR~ra~~~lg~~~~ 540 (1011)
||+.|.|.+|+...
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57788888888754
No 202
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=40.82 E-value=8.1e+02 Score=30.47 Aligned_cols=245 Identities=15% Similarity=0.129 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhhhHh--hcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc-CCcch--HHHHHHHHHhh
Q 001804 483 LLKDAAYGAAAYVYYE--LSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE-IKDDT--KRAVYCALIKL 557 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~--l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~-~~~~~--~~~~~~~ll~~ 557 (1011)
...+.++.++..++.. +...+ .+.-+.+.|++.+.+++ .|.-++-++...+.. -.... ...+.+.++++
T Consensus 346 ~l~~~aLrlL~NLSfd~~~R~~m-V~~GlIPkLv~LL~d~~-----~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 346 DLVNVALRLLFNLSFDPELRSQM-VSLGLIPKLVELLKDPN-----FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHH-HHCCCcHHHHHHhCCCc-----hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 5677788888887743 11100 00002344556666542 344455555555542 00011 11245555665
Q ss_pred cc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc----ccchH
Q 001804 558 LM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE----VIPYA 632 (1011)
Q Consensus 558 L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e----i~p~~ 632 (1011)
|. .++..|...+...+.++.-+.. ..+.+.. ..-++.|+...-+. .+ -.++..|..+...-|. +.+|+
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~--g~gL~~L~~ra~~~--~D--~lLlKlIRNiS~h~~~~k~~f~~~i 492 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKR-NAQLMCE--GNGLQSLMKRALKT--RD--PLLLKLIRNISQHDGPLKELFVDFI 492 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHH-HHHHHHh--cCcHHHHHHHHHhc--cc--HHHHHHHHHHHhcCchHHHHHHHHH
Confidence 54 4566666666555555543321 0111111 12233333332222 12 2267888888877652 34555
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCC--Ccc-hh-hhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHH
Q 001804 633 NKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQ--SHN-CY-SMLLPILRRGIDINSPDELNLLEDSMLLWEATI 708 (1011)
Q Consensus 633 ~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~--~~~-~~-~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~ 708 (1011)
..|+.. ..+.++ .-+ .++|++.+..---++ -.. +. ..++|.+...+.++.. ..++.-++.-+.+++.
T Consensus 493 ~~L~~~----v~~~~~-ee~---~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~-~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 493 GDLAKI----VSSGDS-EEF---VVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGAS-EDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHH----hhcCCc-HHH---HHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCC-ChHHHHHHHHHHHHHH
Confidence 544443 333333 233 345555554432221 111 22 3688999999876422 2356667776666554
Q ss_pred hcCCCCCHHHH--hhHhHHHHHHHh---chhhHHHHHHHHHHHHhcc
Q 001804 709 SHAPVMVPQLL--AYFPCLVEIMER---SFDHLQVAINIIEGYIILG 750 (1011)
Q Consensus 709 ~~~~~~~~~l~--~lf~~l~~~l~~---~~~~l~~~~~il~~yi~lg 750 (1011)
.. +...+-+. .+.+.++.++.. +.|.+-|++-++..++..+
T Consensus 564 ~d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~ 609 (708)
T PF05804_consen 564 SD-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE 609 (708)
T ss_pred CC-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh
Confidence 32 22222222 356666666643 5677777776666666553
No 203
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.85 E-value=7.6e+02 Score=29.91 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCC
Q 001804 482 LLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDK 561 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~ 561 (1011)
.-.|.||..+++.+|-. .+ .|..--..+|+-.++|... .||-.|...+-..+..+ ..+...++.++..|.|.
T Consensus 387 ~EVR~AAV~Sl~~La~s-sP--~FA~~aldfLvDMfNDE~~---~VRL~ai~aL~~Is~~l--~i~eeql~~il~~L~D~ 458 (823)
T KOG2259|consen 387 YEVRRAAVASLCSLATS-SP--GFAVRALDFLVDMFNDEIE---VVRLKAIFALTMISVHL--AIREEQLRQILESLEDR 458 (823)
T ss_pred HHHHHHHHHHHHHHHcC-CC--CcHHHHHHHHHHHhccHHH---HHHHHHHHHHHHHHHHh--eecHHHHHHHHHHHHhc
Confidence 34688999999888743 12 2222222356667777655 79999999998887742 34566677788889998
Q ss_pred ChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 001804 562 DLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSEVIPYANKLVQFFQ 640 (1011)
Q Consensus 562 ~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ei~p~~~~L~~~L~ 640 (1011)
+.-||.+. +.++....+.. ...+...+..|++.+..+..+. .. ++.||..|-++-+ -+...+|..|.
T Consensus 459 s~dvRe~l----~elL~~~~~~d---~~~i~m~v~~lL~~L~kyPqDr-d~-i~~cm~~iGqnH~---~lv~s~m~rfl 525 (823)
T KOG2259|consen 459 SVDVREAL----RELLKNARVSD---LECIDMCVAHLLKNLGKYPQDR-DE-ILRCMGRIGQNHR---RLVLSNMGRFL 525 (823)
T ss_pred CHHHHHHH----HHHHHhcCCCc---HHHHHHHHHHHHHHhhhCCCCc-HH-HHHHHHHHhccCh---hhHHHHHHHHH
Confidence 88899754 44444443222 2355778888898888884332 22 7788886655433 23445555544
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.83 E-value=64 Score=40.42 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=49.7
Q ss_pred hHhhhcc-CCCchhHHHHHHHHHHhhhccCCc----chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhc
Q 001804 514 SLDLSND-HPNMHIIHRKVAIILGQWVSEIKD----DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDA 580 (1011)
Q Consensus 514 l~~l~~~-~~~~~~lR~ra~~~lg~~~~~~~~----~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~ 580 (1011)
+..++++ +| ++|.=+|.++|+.=+.++. -.+....+-+...|.|+-+.||.+|.-||.+|++..
T Consensus 605 le~lnd~~~p---LLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 605 LEHLNDDPEP---LLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHhcCCccH---HHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 4556664 45 9999999999997665432 234556677777888999999999999999999863
No 205
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.39 E-value=8.4e+02 Score=30.25 Aligned_cols=113 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred hhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchH
Q 001804 513 LSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLP 592 (1011)
Q Consensus 513 ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~ 592 (1011)
+-..|+|+++ .+|+-|.-+++-.. -+-..+-++-++-.+..|....||-.||.|+-.+-.-- + .-.+
T Consensus 113 fQk~L~DpN~---LiRasALRvlSsIR---vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd---~-e~k~--- 179 (968)
T KOG1060|consen 113 FQKALKDPNQ---LIRASALRVLSSIR---VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD---P-EQKD--- 179 (968)
T ss_pred HHhhhcCCcH---HHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC---h-hhHH---
Confidence 3456777877 78866655554332 12344556666677777999999999999998875421 1 2222
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc---c-ccchHHHHHHHHHHH
Q 001804 593 ICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS---E-VIPYANKLVQFFQKV 642 (1011)
Q Consensus 593 ~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~---e-i~p~~~~L~~~L~~l 642 (1011)
++++.+=.|+..- ..+. +=.++-.+=+.|. + |.++...++..|+++
T Consensus 180 qL~e~I~~LLaD~---splV-vgsAv~AF~evCPerldLIHknyrklC~ll~dv 229 (968)
T KOG1060|consen 180 QLEEVIKKLLADR---SPLV-VGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDV 229 (968)
T ss_pred HHHHHHHHHhcCC---CCcc-hhHHHHHHHHhchhHHHHhhHHHHHHHhhccch
Confidence 3333333344432 1121 2233333333444 2 567788888888763
No 206
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=39.25 E-value=78 Score=22.64 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=9.7
Q ss_pred hhchHHHHHHHHHHHHHHH
Q 001804 103 REENNQVAQMLAVLISKIA 121 (1011)
Q Consensus 103 ~~~~~~ir~~~a~~i~~Ia 121 (1011)
.+++..++...+-+++.|+
T Consensus 22 ~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 22 KSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TSSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 3445555555555555544
No 207
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=39.16 E-value=1.5e+02 Score=33.00 Aligned_cols=72 Identities=14% Similarity=0.274 Sum_probs=48.8
Q ss_pred hHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc-CCcc------hHHHHHHHHHhhccCCChHHHHHHHHHHHHhh
Q 001804 505 FKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE-IKDD------TKRAVYCALIKLLMDKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 505 ~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~-~~~~------~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~ 577 (1011)
++.++. ..-..+.+++- +.||.+.-++|.+... -.-+ .-+.-+..++.+|.|+.+.||..|-..++-|+
T Consensus 207 ~d~ff~-~~~~Ll~s~NY---vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 207 YDRFFQ-KYNKLLESSNY---VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHH-HHHHHCT-SSH---HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHccCCCe---EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 444444 44455566544 7899999999998752 1111 12556788899999999999999999999999
Q ss_pred hhc
Q 001804 578 EDA 580 (1011)
Q Consensus 578 ~~~ 580 (1011)
.+.
T Consensus 283 ANp 285 (335)
T PF08569_consen 283 ANP 285 (335)
T ss_dssp H-S
T ss_pred hCC
Confidence 875
No 208
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=39.02 E-value=1.4e+02 Score=34.12 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHhhhHhhcCCC--ChHHHHHHHhhHhhh-ccCCCchhHHHHHHHHHHhhhcc--C---CcchHHHHHHH
Q 001804 482 LLLKDAAYGAAAYVYYELSNYL--SFKDWFNGALSLDLS-NDHPNMHIIHRKVAIILGQWVSE--I---KDDTKRAVYCA 553 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~l~~~~--~~~~~l~~~ll~~l~-~~~~~~~~lR~ra~~~lg~~~~~--~---~~~~~~~~~~~ 553 (1011)
-+.|+-++.++|.....+..-. .+...++.-....+. -+.+++--||--+|..+|...+. + +....+.+|+.
T Consensus 498 dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 4778888888887765543211 122222221222111 12222223999999999998773 3 23567899999
Q ss_pred HHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHh
Q 001804 554 LIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEV 605 (1011)
Q Consensus 554 ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 605 (1011)
+..++. ..+..||+.|+.||..--. .+.+-..++-....++..+..-
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~vp~~-----re~~~d~~~Lsw~~lv~aLi~s 625 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALSVPGK-----REQYGDQYALSWNALVTALQKS 625 (728)
T ss_pred HHHHHHHhccceEeehhhhhhcCCCC-----cccchhHHhHHHHHHHHHHHHH
Confidence 999997 5789999999999974322 3344445566666666655543
No 209
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=38.62 E-value=4.4e+02 Score=31.71 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=47.1
Q ss_pred hhhhhHHHHHHHHHhcCCCCCHHHHh----hHhHHHHHHHh--chhhHHHHHHHHHHHHhcch-hhhhhhhHHHHHHHHH
Q 001804 695 NLLEDSMLLWEATISHAPVMVPQLLA----YFPCLVEIMER--SFDHLQVAINIIEGYIILGG-TDFLNMHASCVAKLLD 767 (1011)
Q Consensus 695 ~l~e~~l~L~~~l~~~~~~~~~~l~~----lf~~l~~~l~~--~~~~l~~~~~il~~yi~lg~-~~~l~~~~~~l~~~~~ 767 (1011)
.=+..+|++|..++.......+++.. |.+.+..|+.- +.-|++-=+.|+.+.+.+.. ....-+..+.+..++.
T Consensus 395 Wqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~fIPi~~ll~Eml~ 474 (661)
T KOG2256|consen 395 WQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGTFIPLSPLLVEMLK 474 (661)
T ss_pred HHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCceeecHHHHHHHHH
Confidence 44567899999988743323334443 33344444432 34677878888888888854 3333346677777777
Q ss_pred Hhh
Q 001804 768 LVV 770 (1011)
Q Consensus 768 ~~l 770 (1011)
...
T Consensus 475 ~~~ 477 (661)
T KOG2256|consen 475 SVT 477 (661)
T ss_pred Hhh
Confidence 665
No 210
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=38.60 E-value=5.5e+02 Score=31.14 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=73.4
Q ss_pred CchhHHHHHHHHHHHhhhHhhcCCCC----hHH---HHHHHhhHhhhccCCCchhHHHHHHHHHHhhhcc--CCcchHHH
Q 001804 479 TPGLLLKDAAYGAAAYVYYELSNYLS----FKD---WFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSE--IKDDTKRA 549 (1011)
Q Consensus 479 ~~~~~~keA~l~alg~~a~~l~~~~~----~~~---~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~--~~~~~~~~ 549 (1011)
++.+..|-+.+-+.|.+...+.+.-. +.+ -+...+...++|..| +.|..|...+...... .-+.-+..
T Consensus 310 ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~p---y~RtKalqv~~kifdl~sk~~~~r~e 386 (1128)
T COG5098 310 SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYP---YTRTKALQVLEKIFDLNSKTVGRRHE 386 (1128)
T ss_pred ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHhCcccccchHHH
Confidence 46688899999998888766432211 111 134445667888777 9999999999888773 23455788
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhhhhcCC
Q 001804 550 VYCALIKLLMDKDLSVRLAACRSLCSHIEDANF 582 (1011)
Q Consensus 550 ~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~ 582 (1011)
+...+..+++|..-.||-.|..-+..+.-.-+|
T Consensus 387 v~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 387 VIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 999999999999999999998877776644344
No 211
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=37.90 E-value=7.9e+02 Score=29.53 Aligned_cols=110 Identities=11% Similarity=0.131 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhhccCCcch----HHHHHHHHHhhcc----CCChHHHHHHHHHHHHhhhhcC-CCccccccchHHHHHHH
Q 001804 528 HRKVAIILGQWVSEIKDDT----KRAVYCALIKLLM----DKDLSVRLAACRSLCSHIEDAN-FSERDFTDLLPICWDSC 598 (1011)
Q Consensus 528 R~ra~~~lg~~~~~~~~~~----~~~~~~~ll~~L~----d~~~~Vr~~A~~aL~~~~~~~~-~~~~~l~p~l~~il~~L 598 (1011)
-.+-||.+|..++.+++.. +..+..-++.+-. ..++.|-. +-+-..+..+. |-. .=-.|+...+..|
T Consensus 500 lNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvA---SnIMyvvGQYpRFLk-ahw~FLkTVv~KL 575 (1053)
T COG5101 500 LNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVA---SNIMYVVGQYPRFLK-AHWSFLKTVVKKL 575 (1053)
T ss_pred HhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhe---cceeeeeccchHHHH-HHHHHHHHHHHHH
Confidence 3578999999999877543 3334443333321 12333321 11222222210 000 1124788899999
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHhhc-c--------ccchHHHHHHHHHHH
Q 001804 599 FKLVEEVQEFDSKVQVLNLISILIGHVS-E--------VIPYANKLVQFFQKV 642 (1011)
Q Consensus 599 ~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e--------i~p~~~~L~~~L~~l 642 (1011)
|..|.+..+.--.| ..++.-.|+++|. + -.||...|+..|++.
T Consensus 576 FEFMhE~HEGvqDM-ACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~kt 627 (1053)
T COG5101 576 FEFMHEDHEGVQDM-ACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKT 627 (1053)
T ss_pred HHHHhhhhhhHHhh-hHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhh
Confidence 99999986544444 7788888888876 4 357888887777763
No 212
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.67 E-value=2.5e+02 Score=32.96 Aligned_cols=151 Identities=14% Similarity=0.217 Sum_probs=90.2
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHh-hhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLD-LSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLL 558 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~-l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L 558 (1011)
.+-..|.++..++|.+.-+-.+. . ....+++- .+|.+. =|||.|...+|-.+-+ +++ .+...+.+|
T Consensus 528 ~ds~lRy~G~fs~alAy~GTgn~-~----vv~~lLh~avsD~nD---DVrRAAViAlGfvc~~-D~~----~lv~tvelL 594 (926)
T COG5116 528 KDSILRYNGVFSLALAYVGTGNL-G----VVSTLLHYAVSDGND---DVRRAAVIALGFVCCD-DRD----LLVGTVELL 594 (926)
T ss_pred chHHhhhccHHHHHHHHhcCCcc-h----hHhhhheeecccCch---HHHHHHHHheeeeEec-Ccc----hhhHHHHHh
Confidence 34577888888887766553322 1 33344443 455544 4899999999876542 222 344556667
Q ss_pred cC-CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-cccchHHHHH
Q 001804 559 MD-KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EVIPYANKLV 636 (1011)
Q Consensus 559 ~d-~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-ei~p~~~~L~ 636 (1011)
.+ -+.-||-..+-||.-+|..- ++.. .-.+++.|+. .... -.+...+-+++.|.-.+. ++.|-...|.
T Consensus 595 s~shN~hVR~g~AvaLGiacag~---G~~~---a~diL~~L~~---D~~d-fVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~ 664 (926)
T COG5116 595 SESHNFHVRAGVAVALGIACAGT---GDKV---ATDILEALMY---DTND-FVRQSAMIAVGMILMQCNPELNPNVKRII 664 (926)
T ss_pred hhccchhhhhhhHHHhhhhhcCC---ccHH---HHHHHHHHhh---CcHH-HHHHHHHHHHHHHHhhcCcccChhHHHHH
Confidence 64 47789999999998887653 2111 1233333332 2211 112225567777887888 5999888888
Q ss_pred HHHHHHHhhccccchHH
Q 001804 637 QFFQKVWEESSGESLLQ 653 (1011)
Q Consensus 637 ~~L~~lw~~~~~~~~~~ 653 (1011)
..+.++..+--++.+.+
T Consensus 665 k~f~~vI~~Khe~glak 681 (926)
T COG5116 665 KKFNRVIVDKHESGLAK 681 (926)
T ss_pred HHHHHHHhhhhHhHHHH
Confidence 88888776443344444
No 213
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=36.55 E-value=2.5e+02 Score=26.99 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccch--HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 001804 546 TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLL--PICWDSCFKLVEEVQEFDSKVQVLNLISILIG 623 (1011)
Q Consensus 546 ~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~ 623 (1011)
.-..+..++...|.+.+..|++.|..-|..++.+++ ..|...+ ...++.|.++++.-...+.+..+++.|..-.+
T Consensus 34 ~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 34 GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCG---KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 345678888888988899999999999999999874 3332211 34556666666552233445556666666665
Q ss_pred hhc
Q 001804 624 HVS 626 (1011)
Q Consensus 624 ~~~ 626 (1011)
.+.
T Consensus 111 ~f~ 113 (144)
T cd03568 111 EFK 113 (144)
T ss_pred HhC
Confidence 555
No 214
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=35.82 E-value=3.4e+02 Score=25.76 Aligned_cols=80 Identities=20% Similarity=0.174 Sum_probs=56.7
Q ss_pred cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccch--HHHHHHHHHHHhHhhhhh---hHHHHHHHH
Q 001804 544 DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLL--PICWDSCFKLVEEVQEFD---SKVQVLNLI 618 (1011)
Q Consensus 544 ~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~~e---~~~~l~~~l 618 (1011)
+..-..+...+.+.|.+.+..|+..|..-|..++.++ ++.|...+ ...+..|.+++....... .+..+++.|
T Consensus 37 ~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc---g~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll 113 (140)
T PF00790_consen 37 PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC---GPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELL 113 (140)
T ss_dssp TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS---HHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHH
Confidence 3445677888899999999999999999999999886 34444322 346777777666543333 466677777
Q ss_pred HHHHHhhc
Q 001804 619 SILIGHVS 626 (1011)
Q Consensus 619 ~~ii~~~~ 626 (1011)
..-.+.|+
T Consensus 114 ~~W~~~f~ 121 (140)
T PF00790_consen 114 QEWAEAFK 121 (140)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHC
Confidence 77777775
No 215
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=35.67 E-value=6.4e+02 Score=29.21 Aligned_cols=143 Identities=14% Similarity=0.194 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHhhhHhhcCCCCh-HHH---HHHHhh-Hhhh----ccCCCchhHHHHHHHHHHhhhccC---CcchHHH
Q 001804 482 LLLKDAAYGAAAYVYYELSNYLSF-KDW---FNGALS-LDLS----NDHPNMHIIHRKVAIILGQWVSEI---KDDTKRA 549 (1011)
Q Consensus 482 ~~~keA~l~alg~~a~~l~~~~~~-~~~---l~~~ll-~~l~----~~~~~~~~lR~ra~~~lg~~~~~~---~~~~~~~ 549 (1011)
...|+-+.-++|.+.+.+.+..|- +++ +...++ ..++ ..-.+++ ||.++.-.+|.....+ .+-.+..
T Consensus 447 ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dk-V~~navraLgnllQvlq~i~~~~~~e 525 (728)
T KOG4535|consen 447 LNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDK-VKSNAVRALGNLLQFLQPIEKPTFAE 525 (728)
T ss_pred HhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHhhHHHHHHHhhhccHHH
Confidence 455666778899999887766653 222 222221 1111 1112344 8999998888766532 2333444
Q ss_pred HHHHHHhhcc-----CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHh
Q 001804 550 VYCALIKLLM-----DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGH 624 (1011)
Q Consensus 550 ~~~~ll~~L~-----d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~ 624 (1011)
+.+.-+..+. ....+||=.||.|+.+++.+-.+.- .=.|..+..+..|+.|+.+..+-..+.+...++.....+
T Consensus 526 ~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l-q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 526 IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL-QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc-cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 4444444443 3478999999999999997643211 224677888888888887776555555555666555444
Q ss_pred hc
Q 001804 625 VS 626 (1011)
Q Consensus 625 ~~ 626 (1011)
.+
T Consensus 605 e~ 606 (728)
T KOG4535|consen 605 EQ 606 (728)
T ss_pred cc
Confidence 44
No 216
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.02 E-value=74 Score=29.38 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=45.6
Q ss_pred HHHHhhHhhh-ccCCCchhHHHHHHHHHHhhhccCCc--ch--HHHHHHHHHhhccCCChHHHHHHHHHHHHhhh
Q 001804 509 FNGALSLDLS-NDHPNMHIIHRKVAIILGQWVSEIKD--DT--KRAVYCALIKLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 509 l~~~ll~~l~-~~~~~~~~lR~ra~~~lg~~~~~~~~--~~--~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
+...|+..|. +.+| ..-+.||.=+|+|+...+. .. ...+=..++.+|.++|.-||-.|..|+..++-
T Consensus 44 llk~L~~lL~~s~d~---~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDP---TTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHH---HHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCc---ceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4445566663 3334 6788999999999986532 11 12345667888889999999999999987753
No 217
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=33.74 E-value=7.9e+02 Score=29.48 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCChhhhHHHHHHHHHhhcC-C----ChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccC
Q 001804 8 LPAIYTLLANSMSRDESIRKPAEAALSQSESR-P----GFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRD 82 (1011)
Q Consensus 8 ~~~l~~~L~~s~s~d~~~r~~Ae~~L~~~~~~-p----gf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~ 82 (1011)
.+.-..+|.++- .+....+=|-+.+-.+-+. | ....++++++.+. |..||..|+=-|-...+..
T Consensus 22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDe----d~~iR~~aik~lp~~ck~~------ 90 (556)
T PF05918_consen 22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDE----DVQIRKQAIKGLPQLCKDN------ 90 (556)
T ss_dssp HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-S----SHHHHHHHHHHGGGG--T-------
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcc----cHHHHHHHHHhHHHHHHhH------
Confidence 334444454433 4566666666666666554 4 3567777877654 4778888866555544321
Q ss_pred CCCCCHHHHHHHHHHHHhHHhhchHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHH
Q 001804 83 SVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKE 161 (1011)
Q Consensus 83 ~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~ 161 (1011)
++.-..|=+.|.++|...++.-...+-.++..+.+.|=...-..++..+... .+++....++++..|..-++.
T Consensus 91 -----~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~ 163 (556)
T PF05918_consen 91 -----PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKP 163 (556)
T ss_dssp ------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGG
T ss_pred -----HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhh
Confidence 2223356666777777767677777777777777776323333333333321 245555566666554433333
No 218
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.68 E-value=1.3e+03 Score=31.42 Aligned_cols=134 Identities=13% Similarity=0.132 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 001804 544 DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIG 623 (1011)
Q Consensus 544 ~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~ 623 (1011)
.++++.++...-.+|..++..|+.-|+...+.+...++ .+ +-..++..|+..+..-...+... .++++..++.
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd----s~--~qqeVv~~Lvthi~sg~~~ev~~-aL~vL~~L~~ 502 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD----SY--CQQEVVGALVTHIGSGNSQEVDA-ALDVLCELAE 502 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-----HH--HHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc----ch--hHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHh
Confidence 35677888888888888999999999998888776541 11 33667778777664443334443 6899999998
Q ss_pred hhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcC
Q 001804 624 HVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 624 ~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~ 687 (1011)
...+ +.||+..|...|-.+ ..-.... + -.+++.+++++-.-+........-+--+++.-+.
T Consensus 503 ~~~~~l~~fa~~l~giLD~l-~~Ls~~q-i-R~lf~il~~La~~~~~~~s~i~del~ivIRKQLs 564 (1426)
T PF14631_consen 503 KNPSELQPFATFLKGILDYL-DNLSLQQ-I-RKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLS 564 (1426)
T ss_dssp H-HHHHHHTHHHHHGGGGGG-GG--HHH-H-HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHH-hcCCHHH-H-HHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhc
Confidence 7774 889987666544222 1111111 1 2356666666655443322333344444554444
No 219
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.46 E-value=6e+02 Score=30.01 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=71.8
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhh---hHHHHHHHHHHHHHh
Q 001804 548 RAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFD---SKVQVLNLISILIGH 624 (1011)
Q Consensus 548 ~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e---~~~~l~~~l~~ii~~ 624 (1011)
.-.|+-+...+.+.|..-|-+|..+|+ .|.+ -..+.||.-.. +.+.-..+ ....++..+-.++.+
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~---TDsG--L~~LlPyFv~f-------Iae~vs~ni~~~nL~lL~~lm~m~rS 273 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLE---TDSG--LQQLLPYFVTF-------IAEGVSVNIVQNNLELLIYLMRMVRS 273 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhc---cCcc--HHHHHHHHHHH-------HhhheeeccccccHHHHHHHHHHHHH
Confidence 345555666565567777776655554 3421 12344443333 22221111 122233333334433
Q ss_pred h----c-cccchHHHHHHHHHHHHh--------hccccchHHHHHHHHHHHHHHHcCCCCcchhhhHHHHHHhhcC
Q 001804 625 V----S-EVIPYANKLVQFFQKVWE--------ESSGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGID 687 (1011)
Q Consensus 625 ~----~-ei~p~~~~L~~~L~~lw~--------~~~~~~~~~~~~l~~l~~l~~a~~~~~~~~~~~~~Pvi~~~l~ 687 (1011)
+ . .+.||..+|||.+.-..- ..++++.+|.-.-+.+..|+.-.++.-..+.+.+.-.+..++.
T Consensus 274 Ll~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~ 349 (576)
T KOG2549|consen 274 LLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALL 349 (576)
T ss_pred HhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc
Confidence 3 3 368999999998766332 1356788888888888888888877433455666666666664
No 220
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.45 E-value=3.3e+02 Score=26.09 Aligned_cols=78 Identities=22% Similarity=0.225 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccch--HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 001804 546 TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLL--PICWDSCFKLVEEVQEFDSKVQVLNLISILIG 623 (1011)
Q Consensus 546 ~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~ 623 (1011)
.-.....++.+.|.+.+..|++.|..-|..++.+++ ..|...+ ...++.|.+++..-...+.+..++..+..-.+
T Consensus 38 ~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG---~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 38 QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG---THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC---HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 355678888888988999999999999999998863 2332211 34455555555532223344445666666555
Q ss_pred hhc
Q 001804 624 HVS 626 (1011)
Q Consensus 624 ~~~ 626 (1011)
.++
T Consensus 115 ~f~ 117 (142)
T cd03569 115 AFR 117 (142)
T ss_pred HhC
Confidence 555
No 221
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=32.31 E-value=2.8e+02 Score=33.82 Aligned_cols=109 Identities=16% Similarity=0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCC
Q 001804 483 LLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKD 562 (1011)
Q Consensus 483 ~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~ 562 (1011)
-.|.||..|+|-+...= .+ .+.++ +..|...+ .|.||+-++..+|-.+.--. .......+=.++.|+.
T Consensus 570 DVrRaAVialGFVl~~d-----p~-~~~s~-V~lLses~--N~HVRyGaA~ALGIaCAGtG---~~eAi~lLepl~~D~~ 637 (929)
T KOG2062|consen 570 DVRRAAVIALGFVLFRD-----PE-QLPST-VSLLSESY--NPHVRYGAAMALGIACAGTG---LKEAINLLEPLTSDPV 637 (929)
T ss_pred HHHHHHHHHheeeEecC-----hh-hchHH-HHHHhhhc--ChhhhhhHHHHHhhhhcCCC---cHHHHHHHhhhhcChH
Confidence 46889999999776431 11 12223 33444332 23799999999999876321 2223333334445877
Q ss_pred hHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhh
Q 001804 563 LSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQ 606 (1011)
Q Consensus 563 ~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 606 (1011)
--||-.|+.|+.-+.-.. .+.+-|-...+-+.+.+.+.+-.
T Consensus 638 ~fVRQgAlIa~amIm~Q~---t~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 638 DFVRQGALIALAMIMIQQ---TEQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred HHHHHHHHHHHHHHHHhc---ccccCchHHHHHHHHHHHhhhhh
Confidence 789999999998764432 56888999999999998887753
No 222
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=31.89 E-value=3.7e+02 Score=25.32 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=53.6
Q ss_pred chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccch--HHHHHHHHHHHhHhhhhh-hHHHHHHHHHHH
Q 001804 545 DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLL--PICWDSCFKLVEEVQEFD-SKVQVLNLISIL 621 (1011)
Q Consensus 545 ~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~~~~~e-~~~~l~~~l~~i 621 (1011)
..-..+..++.+.|.+.+..|+..|..-|..++.+++ ..|.-.+ ...++.|.++++...... .+..++..+..-
T Consensus 33 ~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg---~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W 109 (133)
T smart00288 33 DGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCG---SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEW 109 (133)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC---HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence 4456678889999999999999999999999998863 3333222 235666666665543322 455566777766
Q ss_pred HHhhc
Q 001804 622 IGHVS 626 (1011)
Q Consensus 622 i~~~~ 626 (1011)
.+.++
T Consensus 110 ~~~f~ 114 (133)
T smart00288 110 ADAFK 114 (133)
T ss_pred HHHHc
Confidence 66665
No 223
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=31.15 E-value=57 Score=23.87 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHH
Q 001804 547 KRAVYCALIKLLMDKDLSVRLAACRS 572 (1011)
Q Consensus 547 ~~~~~~~ll~~L~d~~~~Vr~~A~~a 572 (1011)
.+.+.+.+...|.|++..||.+|...
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 35788999999999999999988764
No 224
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=31.06 E-value=1.8e+02 Score=26.08 Aligned_cols=56 Identities=9% Similarity=-0.028 Sum_probs=43.3
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHh
Q 001804 548 RAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEV 605 (1011)
Q Consensus 548 ~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~ 605 (1011)
+.+.-.+...|.+-...||..|..-|.-+++.++ .+.+..+-..++++++.++...
T Consensus 10 ~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p--~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 10 PLLMLYISSAMTHISPDIREDSLKFLDLLLEHAP--DELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCC--hHhHhhhHHHHHHHHHHHHCCC
Confidence 4444455556667789999999999999999873 2236778889999999999876
No 225
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=30.91 E-value=3.3e+02 Score=25.64 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=55.0
Q ss_pred cchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccch-H-HHHHHHHHHHhH--hhhhhhHHHHHHHHH
Q 001804 544 DDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLL-P-ICWDSCFKLVEE--VQEFDSKVQVLNLIS 619 (1011)
Q Consensus 544 ~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l-~-~il~~L~~ll~~--~~~~e~~~~l~~~l~ 619 (1011)
+..-..+...+.+.|.+.+..|++.|...|..++.+++ ..|...+ . ..+..|.+++.. ....+.+..+++.+.
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg---~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCG---KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC---hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 34456678889999998999999999999999998873 3343222 2 345556666654 223345566777777
Q ss_pred HHHHhhc
Q 001804 620 ILIGHVS 626 (1011)
Q Consensus 620 ~ii~~~~ 626 (1011)
.-.+.++
T Consensus 109 ~W~~~f~ 115 (133)
T cd03561 109 AWSESFG 115 (133)
T ss_pred HHHHHhc
Confidence 7777776
No 226
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=30.78 E-value=93 Score=37.41 Aligned_cols=77 Identities=6% Similarity=0.075 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCc-chHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhh
Q 001804 501 NYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKD-DTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIED 579 (1011)
Q Consensus 501 ~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~-~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~ 579 (1011)
+.-+|..-+.+.|++.+..++- -+|.+-+--+-+|...+++ .+-.++|+.+.+.+.|.+..+|..+..++..++..
T Consensus 323 d~~eyq~~i~p~l~kLF~~~Dr---~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 323 DEEEYQVRIIPVLLKLFKSPDR---QIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccccccchhhhHHHHhcCcch---HHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 3345666688889999988765 5888888888888887765 45788999999999999999999999888877654
Q ss_pred c
Q 001804 580 A 580 (1011)
Q Consensus 580 ~ 580 (1011)
.
T Consensus 400 L 400 (690)
T KOG1243|consen 400 L 400 (690)
T ss_pred h
Confidence 3
No 227
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.44 E-value=3.2e+02 Score=33.53 Aligned_cols=140 Identities=12% Similarity=-0.029 Sum_probs=0.0
Q ss_pred ccccccccccHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHhhhHhhcCCCChHHHHH
Q 001804 431 VQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFN 510 (1011)
Q Consensus 431 ~~~~~~~r~~a~~~l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~keA~l~alg~~a~~l~~~~~~~~~l~ 510 (1011)
+...++...+.-..+.+++..-++.= ...+..+-+++ +|.-.++=+...++.+...- +.-+-.+-..
T Consensus 402 ~eGg~e~K~aivd~Ii~iie~~pdsK-e~~L~~LCefI-----------EDce~~~i~~rILhlLG~Eg-P~a~~Pskyi 468 (865)
T KOG1078|consen 402 EEGGFEFKRAIVDAIIDIIEENPDSK-ERGLEHLCEFI-----------EDCEFTQIAVRILHLLGKEG-PKAPNPSKYI 468 (865)
T ss_pred hccCchHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHH-----------HhccchHHHHHHHHHHhccC-CCCCCcchhh
Q ss_pred HHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccc
Q 001804 511 GALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDL 590 (1011)
Q Consensus 511 ~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~ 590 (1011)
.++.+.+.=.+. ++|+.|.-++.+|. .-++..++.+...+..|+.|.|--||-.|.-+++.+-+. ..+...||
T Consensus 469 r~iyNRviLEn~---ivRaaAv~alaKfg-~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~---~~~l~~~~ 541 (865)
T KOG1078|consen 469 RFIYNRVILENA---IVRAAAVSALAKFG-AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK---DDVLNQNY 541 (865)
T ss_pred HHHhhhhhhhhh---hhHHHHHHHHHHHh-cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh---hhhhcccc
No 228
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.07 E-value=9.4e+02 Score=28.07 Aligned_cols=98 Identities=21% Similarity=0.135 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhhhccCCc---chHHHHHHHHHhhcc-CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHH
Q 001804 526 IIHRKVAIILGQWVSEIKD---DTKRAVYCALIKLLM-DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKL 601 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~~~---~~~~~~~~~ll~~L~-d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~l 601 (1011)
.+|+-||-.+|+-++..+. .+...++.+++..|- +.+..|..+|..+|....+.. ....+.+|+-++--.+-.+
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~--~~~~l~~~~l~ialrlR~l 350 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA--SNDDLESYLLNIALRLRTL 350 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh--hhcchhhhchhHHHHHHHH
Confidence 6999999999999887554 345777888877775 467999999999999888764 3568899999999998888
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHhhc
Q 001804 602 VEEVQEFDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 602 l~~~~~~e~~~~l~~~l~~ii~~~~ 626 (1011)
+...+ ++.+....-..+.+..-.|
T Consensus 351 ~~se~-~~~R~aa~~Lfg~L~~l~g 374 (533)
T KOG2032|consen 351 FDSED-DKMRAAAFVLFGALAKLAG 374 (533)
T ss_pred HHhcC-hhhhhhHHHHHHHHHHHcC
Confidence 87653 2323323344444544444
No 229
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.69 E-value=5.3e+02 Score=27.63 Aligned_cols=121 Identities=10% Similarity=0.078 Sum_probs=76.3
Q ss_pred HHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCChHHHHHH
Q 001804 490 GAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDLSVRLAA 569 (1011)
Q Consensus 490 ~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~~Vr~~A 569 (1011)
.+++..|+. .+.-+....+..+--..+++... +++..+..+-..| -|++-..++..++.+|.+.-.-+|...
T Consensus 137 ~~La~~a~~-~~~~~La~il~~ya~~~fr~~~d---fl~~v~~~l~~~f----~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 137 EALAQVAEA-QGLPNLARILSSYAKGRFRDKDD---FLSQVVSYLREAF----FPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHHHHh-CCCccHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHHh----CchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 444444432 12334444455444444444333 5555433333333 345556677778888876667799999
Q ss_pred HHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc
Q 001804 570 CRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 570 ~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~ 626 (1011)
..-|+.++...+.. .|+.++++.-++++++.--..+ .++++..++.+.|
T Consensus 209 L~iL~~ll~~~d~~----~~~~~dlispllrlL~t~~~~e----AL~VLd~~v~~s~ 257 (262)
T PF14225_consen 209 LQILKVLLPHVDMR----SPHGADLISPLLRLLQTDLWME----ALEVLDEIVTRSG 257 (262)
T ss_pred HHHHHHHhccccCC----CCcchHHHHHHHHHhCCccHHH----HHHHHHHHHhhcc
Confidence 99999999876544 5688889999999886543333 7788888887766
No 230
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.95 E-value=2.6e+02 Score=28.55 Aligned_cols=92 Identities=22% Similarity=0.332 Sum_probs=57.3
Q ss_pred ccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVSE-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFV 664 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~ 664 (1011)
.+-+|++-..+.|.. .+. ..+...-.-+..++.+-|+ |.|...+|+..|.+-....+++ ..+..|.++..++
T Consensus 111 dy~~yLp~F~dGL~e----~~h-pyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~e--v~~~~Lkvlq~lv 183 (262)
T KOG3961|consen 111 DYCPYLPLFFDGLAE----TDH-PYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDE--VICRTLKVLQQLV 183 (262)
T ss_pred cchHHHHHHhhhhhh----cCC-CcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHH--HHHHHHHHHHHHH
Confidence 466788877777543 222 1122234455566667774 9999999999888766544333 4455788888888
Q ss_pred HHcC---CCCcchhhhHHHHHHh
Q 001804 665 VALG---YQSHNCYSMLLPILRR 684 (1011)
Q Consensus 665 ~a~~---~~~~~~~~~~~Pvi~~ 684 (1011)
.+.| ..-..||..++|++..
T Consensus 184 ~~~~~vG~aLVPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 184 VSVGCVGAALVPFYRQLLPVLNT 206 (262)
T ss_pred HhccccchhhhhHHHHhhhhhhh
Confidence 8765 3223455566666653
No 231
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.96 E-value=1.6e+03 Score=30.04 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHcCCCCcc-------hhhhHHHHHHhhcCCCCCCc---chhhhhHHHHHHHHHhcCCCCCHHHHhhHhHH
Q 001804 656 LLIALRNFVVALGYQSHN-------CYSMLLPILRRGIDINSPDE---LNLLEDSMLLWEATISHAPVMVPQLLAYFPCL 725 (1011)
Q Consensus 656 ~l~~l~~l~~a~~~~~~~-------~~~~~~Pvi~~~l~~~~~~~---~~l~e~~l~L~~~l~~~~~~~~~~l~~lf~~l 725 (1011)
+.-|++.|.+-..++.+- ...+++-.+....+..+|.+ .+++|.....-..++.-.+...+.+.++|...
T Consensus 70 vacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f 149 (1266)
T KOG1525|consen 70 VACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTF 149 (1266)
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHH
Confidence 445677777766655221 11222233333334445543 34455444444222222233333445566666
Q ss_pred HHHHHhc-hhhHHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHhhcCccchhHhhHHHHHHHHHHhCCCCchhHHHHHH
Q 001804 726 VEIMERS-FDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSL 804 (1011)
Q Consensus 726 ~~~l~~~-~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~e~ll~~~~~~~~~~~~~~l 804 (1011)
+.+...+ ...+-++..|+..-|..... . ....+.-++..++..- .+....+.++.+.++..++....+.+..++
T Consensus 150 ~d~~~~~~~~~v~~~~~i~~~li~e~d~--v--~~e~L~~ll~~lv~~~-~~~~~~a~~la~~li~~~a~~~~~~i~~f~ 224 (1266)
T KOG1525|consen 150 FDLARKGHPKKVFNMLDIAIMLITEEDT--V--QSELLDVLLENLVKPG-RDTIKEADKLASDLIERCADNLEDTIANFL 224 (1266)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHhhcc--c--hHHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHhhhhhchhHHHHH
Confidence 6665432 22222244444443333221 1 1233444555555432 334455677888888888766677777766
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHHhChHHHHHH
Q 001804 805 QKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQL 847 (1011)
Q Consensus 805 ~~l~~~~~~~~~~~~~~~~~~~~~~~~vl~rl~~~~~~~~~~~ 847 (1011)
.+-+. +. .+..+++...+..++-++-...|+.+..+
T Consensus 225 ~~~~~----~~---~s~~~~~~~~~he~i~~L~~~~p~ll~~v 260 (1266)
T KOG1525|consen 225 NSCLT----EY---KSRQSSLKIKYHELILELWRIAPQLLLAV 260 (1266)
T ss_pred HHHHh----hc---cccccchhhHHHHHHHHHHHhhHHHHHHH
Confidence 65442 11 11124577888899999999888877654
No 232
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=27.83 E-value=3.7e+02 Score=29.97 Aligned_cols=112 Identities=16% Similarity=0.030 Sum_probs=74.1
Q ss_pred HHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhc-cCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhccCCCh
Q 001804 485 KDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSN-DHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMDKDL 563 (1011)
Q Consensus 485 keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~-~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d~~~ 563 (1011)
|-..+.++..+.. .+...-+...+.|-+.. .+. -.....+-+++.|...++.+.-..+++.+...|.|...
T Consensus 4 r~~~~~~L~~l~~-----~~~s~~i~~~l~~~~~KE~nE---~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~ 75 (339)
T PF12074_consen 4 RVLHASMLSSLPS-----SSLSSKIVQGLSPLLSKESNE---AALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKP 75 (339)
T ss_pred HHHHHHHHHhCCC-----cchHHHHHHHHHHHHHhhcCH---HHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCC
Confidence 4444555554432 11333455556666654 333 46677888888888866666778899999999999888
Q ss_pred HHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhh
Q 001804 564 SVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQ 606 (1011)
Q Consensus 564 ~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~ 606 (1011)
+||-.=..++...+... ......+++.+++..|...++++.
T Consensus 76 ~vR~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~~~~~~~ 116 (339)
T PF12074_consen 76 PVRRAWLLCLGEALWES--PNSDSLKFAEPFLPKLLQSLKEAS 116 (339)
T ss_pred cHHHHHHHHHHHHHhhc--cCchHHHHHHHHHHHHHHHHHHHH
Confidence 89988877777766511 123556677777777777777764
No 233
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=26.58 E-value=8.9e+02 Score=26.63 Aligned_cols=120 Identities=7% Similarity=0.028 Sum_probs=74.1
Q ss_pred ccccchHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHhhc-c-ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Q 001804 586 DFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E-VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNF 663 (1011)
Q Consensus 586 ~l~p~l~~il~~L~~ll~~~~~~e~~~~l~~~l~~ii~~~~-e-i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l 663 (1011)
...|+=..+-..|-++++-.=..-.....+++.+.|.++.| + +.....-..+-|..+...+ ..-+|..+++.+...
T Consensus 47 ~~IP~k~~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~a--si~Vkp~lL~i~e~~ 124 (307)
T PF04118_consen 47 PYIPHKLQVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYA--SIQVKPQLLDIYEKY 124 (307)
T ss_pred ceeCcHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHH
Confidence 44555556666666666543222233447888899999988 4 5443333333333333322 234667778888777
Q ss_pred HHHcCCCCcchhhhHHHHHHhhcCCCCCCcchhhhhHHHHHHHHHhc
Q 001804 664 VVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISH 710 (1011)
Q Consensus 664 ~~a~~~~~~~~~~~~~Pvi~~~l~~~~~~~~~l~e~~l~L~~~l~~~ 710 (1011)
..-+|+ .+.+.+-|++.-.+-.-+++..++++.++.|+..+-..
T Consensus 125 ~lpL~~---~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~ 168 (307)
T PF04118_consen 125 YLPLGP---ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA 168 (307)
T ss_pred hcCccH---HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh
Confidence 776665 47777778877776432234567889999998877654
No 234
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=26.55 E-value=91 Score=20.50 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhhh
Q 001804 526 IIHRKVAIILGQWV 539 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~ 539 (1011)
.+|++|++.+|++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 58999999999874
No 235
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.17 E-value=4.4e+02 Score=31.88 Aligned_cols=91 Identities=15% Similarity=-0.035 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCC-----hHHHHHHHhhHhhhc---cCCCchhHHHHHHHHHHhhhccCCcchHHHHH
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLS-----FKDWFNGALSLDLSN---DHPNMHIIHRKVAIILGQWVSEIKDDTKRAVY 551 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~-----~~~~l~~~ll~~l~~---~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~ 551 (1011)
+....+.+|++++|.+.......-+ ...-+.+++...+.. .... --+--++-.||.... +...
T Consensus 409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~LkaLGN~g~-------~~~i 479 (574)
T smart00638 409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE--EEIQLYLKALGNAGH-------PSSI 479 (574)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc--hheeeHHHhhhccCC-------hhHH
Confidence 4458899999999999875332221 011233444333322 1111 123334555665432 2233
Q ss_pred HHHHhhcc---CCChHHHHHHHHHHHHhhhh
Q 001804 552 CALIKLLM---DKDLSVRLAACRSLCSHIED 579 (1011)
Q Consensus 552 ~~ll~~L~---d~~~~Vr~~A~~aL~~~~~~ 579 (1011)
..+...+. +.+..+|++|..||+.+.+.
T Consensus 480 ~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 480 KVLEPYLEGAEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 33333343 34677999999999988764
No 236
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.83 E-value=1.1e+03 Score=32.40 Aligned_cols=147 Identities=18% Similarity=0.111 Sum_probs=88.9
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHH---HHHHHHhhhcc-CCcchHHHHHHHHH
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRK---VAIILGQWVSE-IKDDTKRAVYCALI 555 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~r---a~~~lg~~~~~-~~~~~~~~~~~~ll 555 (1011)
++.+.|=++-.|+|..+... +.-+|-.-+..+.+..+.+-.+ ++.|.- |.-++-+|.+. .+.+....-+..++
T Consensus 888 ~~p~~rc~~~ea~arLaq~v-~~~~f~a~~aq~~fdklas~~d--~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~ill 964 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVV-GSAPFVASLAQNSFDKLASARD--PITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILL 964 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHH
Confidence 34455556666666666443 3344433344455556655433 133333 33345566663 46677778888889
Q ss_pred hhccCCCh-HHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhhhhH--HHHHHH------HHHHHHhhc
Q 001804 556 KLLMDKDL-SVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSK--VQVLNL------ISILIGHVS 626 (1011)
Q Consensus 556 ~~L~d~~~-~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~e~~--~~l~~~------l~~ii~~~~ 626 (1011)
.+.+|+.. .||.-+..|+.-+++.. ..-+.-|.++.+..+..++-.+....+. -..-.+ .+.++..+|
T Consensus 965 al~~Ds~~p~VqtwSL~al~~i~~s~---~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlg 1041 (2067)
T KOG1822|consen 965 ALATDSTSPVVQTWSLHALALILDSS---GPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLG 1041 (2067)
T ss_pred HHhhcCCCchhhhhHHHHHHHHHcCC---CceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcc
Confidence 98888655 89999999999888763 4566778899888888877554321111 111222 337777888
Q ss_pred -cccchH
Q 001804 627 -EVIPYA 632 (1011)
Q Consensus 627 -ei~p~~ 632 (1011)
++.|-.
T Consensus 1042 peL~~N~ 1048 (2067)
T KOG1822|consen 1042 PELGPNG 1048 (2067)
T ss_pred cccCCCC
Confidence 576643
No 237
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=24.79 E-value=7.9e+02 Score=27.51 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCCCCc----chhhhHHHHHHhhcC-C------CCCCcchhhhhHHHHHHHHHhcCCCCCHHHH-hh
Q 001804 654 IQLLIALRNFVVALGYQSH----NCYSMLLPILRRGID-I------NSPDELNLLEDSMLLWEATISHAPVMVPQLL-AY 721 (1011)
Q Consensus 654 ~~~l~~l~~l~~a~~~~~~----~~~~~~~Pvi~~~l~-~------~~~~~~~l~e~~l~L~~~l~~~~~~~~~~l~-~l 721 (1011)
...+..+-.++.|+=.++. .|...++|.+-.|+- . +..++-.+-+.|-.++..+++......+.|. .+
T Consensus 231 l~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri 310 (343)
T cd08050 231 LALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRI 310 (343)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH
Confidence 3456667777777765542 333446666665552 1 1235668999999999999988665555554 35
Q ss_pred HhHHHHHHHhc
Q 001804 722 FPCLVEIMERS 732 (1011)
Q Consensus 722 f~~l~~~l~~~ 732 (1011)
+..+...+.+.
T Consensus 311 ~~tl~k~l~d~ 321 (343)
T cd08050 311 TRTLLKALLDP 321 (343)
T ss_pred HHHHHHHHcCC
Confidence 55555555543
No 238
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=23.54 E-value=1e+03 Score=30.21 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhhccCCcc-hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhh
Q 001804 527 IHRKVAIILGQWVSEIKDD-TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIE 578 (1011)
Q Consensus 527 lR~ra~~~lg~~~~~~~~~-~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~ 578 (1011)
+|-.+|-.+-.+-..++.+ .++.++-++..+-+|+-.+||-++|.+|..+.-
T Consensus 593 v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~ 645 (1529)
T KOG0413|consen 593 VKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELML 645 (1529)
T ss_pred cchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHh
Confidence 6777777777666655433 344444444444457778899999998887653
No 239
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.53 E-value=1.5e+02 Score=29.92 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=57.2
Q ss_pred chhHHHHHHH-HHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhc
Q 001804 480 PGLLLKDAAY-GAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLL 558 (1011)
Q Consensus 480 ~~~~~keA~l-~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L 558 (1011)
++|-.-|... ..+|..- ..... + +.+..-..++++ ++||.++-+...|... ......+++.+-.++
T Consensus 84 ~~W~~~D~~~~~~~~~~~---~~~~~----~-~~~~~w~~s~~~---~~rR~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 150 (197)
T cd06561 84 DNWDLVDSLCANLLGKLL---YAEPE----L-DLLEEWAKSENE---WVRRAAIVLLLRLIKK--ETDFDLLLEIIERLL 150 (197)
T ss_pred chHHHHHHHHHHHHHHHH---hcCcc----h-HHHHHHHhCCcH---HHHHHHHHHHHHHHHh--cccHHHHHHHHHHhC
Confidence 5787777642 3333222 12111 1 345555667766 6666666566665544 346788889888888
Q ss_pred cCCChHHHHHHHHHHHHhhhh
Q 001804 559 MDKDLSVRLAACRSLCSHIED 579 (1011)
Q Consensus 559 ~d~~~~Vr~~A~~aL~~~~~~ 579 (1011)
.|++.-||-+.+.+|+.+...
T Consensus 151 ~d~~~~Vqkav~w~L~~~~~~ 171 (197)
T cd06561 151 HDEEYFVQKAVGWALREYGKK 171 (197)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999987654
No 240
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.17 E-value=1.2e+03 Score=28.72 Aligned_cols=139 Identities=19% Similarity=0.280 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCChhhhHHHHHHHHHhhc---CCChHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccccccccccCCCCCC
Q 001804 11 IYTLLANSMSRDESIRKPAEAALSQSES---RPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGIS 87 (1011)
Q Consensus 11 l~~~L~~s~s~d~~~r~~Ae~~L~~~~~---~pgf~~~L~~i~~~~~~~~~~~vR~~AaI~lKN~I~~~W~~~~~~~~i~ 87 (1011)
|.++|...-|+|..+...+.+.+++.-. .|-+.+.|.+.+.+.+. .+++-|+.+ |++
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s------~~~~~il~~--~~~------------ 65 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNS------QRALEILVG--VQE------------ 65 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCc------HHHHHHHHh--cCC------------
Confidence 5556666678999888888888886544 35678999999988752 233333332 111
Q ss_pred HHHHHHHHHHHHhHHhh--chHHHHHHHHHHHHHHHhhhCCCCc------hhhHHHHHHHhccC-CHHHHhHHHHHHHHH
Q 001804 88 NEEKVHLRQKLLTHLRE--ENNQVAQMLAVLISKIARFDYPREW------PQLFSVLAQQLQAA-DVLTSHRIFMILFRT 158 (1011)
Q Consensus 88 ~e~K~~Ir~~ll~~L~~--~~~~ir~~~a~~i~~Ia~~d~P~~W------P~Ll~~L~~~l~s~-~~~~~~~al~~L~~v 158 (1011)
+.+|. ++..|++ ..+.-|.+.-.+++.+++..-| | -.|++.|+.+|+-. +...+..|+.+|..+
T Consensus 66 P~~K~-----~~~~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~--~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~Liml 138 (668)
T PF04388_consen 66 PHDKH-----LFDKLNDYFVKPSYRLQALTLLGHFVRSQPP--WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIML 138 (668)
T ss_pred ccHHH-----HHHHHHHHHcCchhHHHHHHHHHHHHhcCCc--hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 11222 2333333 2345677778888888887654 4 36999999999764 566677888887766
Q ss_pred HHHhhcccchhhHHHHHHHHHHHHHH
Q 001804 159 LKELSTKRLTADQRNFAEISSHLFDY 184 (1011)
Q Consensus 159 ~k~~~~~rl~~~~~~l~~i~~~lf~~ 184 (1011)
+--+.. .+....+.+|..
T Consensus 139 LP~ip~--------~l~~~L~~Lf~I 156 (668)
T PF04388_consen 139 LPHIPS--------SLGPHLPDLFNI 156 (668)
T ss_pred hccccc--------hhhHHHHHHHHH
Confidence 643332 234456666653
No 241
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=22.82 E-value=2.6e+02 Score=31.03 Aligned_cols=80 Identities=29% Similarity=0.120 Sum_probs=59.3
Q ss_pred chhHHHHHHHHHHHhhhHhhcCCCChHHHHHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc
Q 001804 480 PGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM 559 (1011)
Q Consensus 480 ~~~~~keA~l~alg~~a~~l~~~~~~~~~l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~ 559 (1011)
..|..|.++..++|.+.+.- ..+.+.+.+.++.. .+|+++.-.+|+..... ..+-..+...+.
T Consensus 161 ~~~~~r~~a~~~l~~~~~~~---------~~~~l~~~l~~~~~---~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~ 223 (335)
T COG1413 161 ALLDVRAAAAEALGELGDPE---------AIPLLIELLEDEDA---DVRRAAASALGQLGSEN-----VEAADLLVKALS 223 (335)
T ss_pred hHHHHHHHHHHHHHHcCChh---------hhHHHHHHHhCchH---HHHHHHHHHHHHhhcch-----hhHHHHHHHHhc
Confidence 44677888888888766542 23346677777766 79999999999986532 345566677788
Q ss_pred CCChHHHHHHHHHHHHh
Q 001804 560 DKDLSVRLAACRSLCSH 576 (1011)
Q Consensus 560 d~~~~Vr~~A~~aL~~~ 576 (1011)
|.+..||..++.++...
T Consensus 224 ~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 224 DESLEVRKAALLALGEI 240 (335)
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999888754
No 242
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=22.30 E-value=4e+02 Score=25.45 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhhcCCCccccccch--HHHHHHHHHHHhH-----hhhhhhHHHHHHHH
Q 001804 546 TKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLL--PICWDSCFKLVEE-----VQEFDSKVQVLNLI 618 (1011)
Q Consensus 546 ~~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l--~~il~~L~~ll~~-----~~~~e~~~~l~~~l 618 (1011)
.-.....++.+.|++.+..|++.|...|..++.+++ ..|...+ ...+..|.++++. ....+.+..++..+
T Consensus 35 ~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG---~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG---ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC---HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 345577888899999999999999999999999873 3343222 3455566666642 11234444555656
Q ss_pred HHHHHhhc
Q 001804 619 SILIGHVS 626 (1011)
Q Consensus 619 ~~ii~~~~ 626 (1011)
..-.+.++
T Consensus 112 ~~W~~~f~ 119 (139)
T cd03567 112 YSWTLELP 119 (139)
T ss_pred HHHHHHhc
Confidence 55555554
No 243
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=22.29 E-value=9.7e+02 Score=29.01 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=76.6
Q ss_pred cccccHHHHHHHHHHHcc-cchHHHHHHHHHHHHhcCCCCCCCCCchh-HHHHHHHHHHHhhhHhhcC-CCChHHHHHHH
Q 001804 436 KLRPCAEALYIVLFENHS-QLLGPVVVSILQEAMNGCSTSVTEITPGL-LLKDAAYGAAAYVYYELSN-YLSFKDWFNGA 512 (1011)
Q Consensus 436 ~~r~~a~~~l~~l~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~-~~keA~l~alg~~a~~l~~-~~~~~~~l~~~ 512 (1011)
++|..|-.++.+++.++. ..+.|.+-.++-.+..+|....+++.+-. -.+.++.-.+|.=...-+. .+-+-.+|.-+
T Consensus 297 ~~rv~Afl~l~~l~~~~~~~~l~~vlk~mY~afv~nsk~~~~~tl~~i~Fl~~slvEL~~ld~~~~Yq~aF~yIrQLAih 376 (661)
T KOG2256|consen 297 SLRVLAFLCLIDLCRKFKSTCLDPVLKTMYLAFVRNSKFVTVNTLPLINFLQNSLVELLGLDLQVSYQHAFVYIRQLAIH 376 (661)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 678777777777777665 44557777777777776633222222222 2444444444432111000 01111223323
Q ss_pred hhHhhhccCCC--chhHHHHHHHHHHhhhccCC------cchH---HHHHHHHHhhcc----CCChHHHHHHHHHHHHhh
Q 001804 513 LSLDLSNDHPN--MHIIHRKVAIILGQWVSEIK------DDTK---RAVYCALIKLLM----DKDLSVRLAACRSLCSHI 577 (1011)
Q Consensus 513 ll~~l~~~~~~--~~~lR~ra~~~lg~~~~~~~------~~~~---~~~~~~ll~~L~----d~~~~Vr~~A~~aL~~~~ 577 (1011)
|-..+...... .++---+-+.++--|+..++ .+.. -++.+.++.+.. .+-.|.|+.++++|..+.
T Consensus 377 LRnam~~k~K~s~~~VYnWqfi~cL~lW~rvisf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls 456 (661)
T KOG2256|consen 377 LRNAMITKNKESVQSVYNWQYVHCLDLWLRVISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLS 456 (661)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHH
Confidence 32233222110 01112222333444443211 2222 333333344433 467899999999999998
Q ss_pred hhcCCCccccccchHHHHH
Q 001804 578 EDANFSERDFTDLLPICWD 596 (1011)
Q Consensus 578 ~~~~~~~~~l~p~l~~il~ 596 (1011)
... ..|.|.++-+++
T Consensus 457 ~ss----g~fIPi~~ll~E 471 (661)
T KOG2256|consen 457 RSS----GTFIPLSPLLVE 471 (661)
T ss_pred hhc----CceeecHHHHHH
Confidence 864 377777766443
No 244
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=22.15 E-value=7.7e+02 Score=27.38 Aligned_cols=103 Identities=12% Similarity=0.186 Sum_probs=62.1
Q ss_pred cchHHHHHHHHHHHHHHHcCCC-Ccch---hhhHHHHHHhhcCCCCCC--c--------chhhhhHHHHHHHHHhcCCC-
Q 001804 649 ESLLQIQLLIALRNFVVALGYQ-SHNC---YSMLLPILRRGIDINSPD--E--------LNLLEDSMLLWEATISHAPV- 713 (1011)
Q Consensus 649 ~~~~~~~~l~~l~~l~~a~~~~-~~~~---~~~~~Pvi~~~l~~~~~~--~--------~~l~e~~l~L~~~l~~~~~~- 713 (1011)
+.-+..++|+.|+.++.--|.. ...+ ..+-.+.+...+...... . .+.--..+++|.+++...+.
T Consensus 69 ~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~ 148 (330)
T PF11707_consen 69 KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPE 148 (330)
T ss_pred cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHH
Confidence 3444457888888887733321 1111 134455555555421100 0 15556678899999987643
Q ss_pred CCHHHHh---hHhHHHHHHH-hchhhHHHHHHHHHHHHhcch
Q 001804 714 MVPQLLA---YFPCLVEIME-RSFDHLQVAINIIEGYIILGG 751 (1011)
Q Consensus 714 ~~~~l~~---lf~~l~~~l~-~~~~~l~~~~~il~~yi~lg~ 751 (1011)
+-.+++. ++..++.-+. |+.+.+..++..+..||+.++
T Consensus 149 ~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~ 190 (330)
T PF11707_consen 149 LKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDS 190 (330)
T ss_pred HHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCC
Confidence 2223332 5556555555 467899999999999999876
No 245
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=1.1e+03 Score=28.91 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=50.2
Q ss_pred HHHHhhHhhhccCCCchhHHHHHHHHHHhhhccCCcch--------HHHHHHHHHhhccCCChHHHHHHHHHHHHhhhh
Q 001804 509 FNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDT--------KRAVYCALIKLLMDKDLSVRLAACRSLCSHIED 579 (1011)
Q Consensus 509 l~~~ll~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~--------~~~~~~~ll~~L~d~~~~Vr~~A~~aL~~~~~~ 579 (1011)
+.+.+...|+.++. .||.-|+.++-.+-...+|+. ...-+..+..+|.|+-+-||-+|..-+...+..
T Consensus 175 ~~p~l~R~L~a~Ns---~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~ 250 (1005)
T KOG1949|consen 175 YKPILWRGLKARNS---EVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSK 250 (1005)
T ss_pred HhHHHHHhhccCch---hhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 45666777887766 699999999887777544433 344566778888899999999998877766544
No 246
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=21.51 E-value=7.3e+02 Score=36.35 Aligned_cols=110 Identities=15% Similarity=0.314 Sum_probs=68.8
Q ss_pred hhccCC--ChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHhhc--c
Q 001804 556 KLLMDK--DLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEF----DSKVQVLNLISILIGHVS--E 627 (1011)
Q Consensus 556 ~~L~d~--~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L~~ll~~~~~~----e~~~~l~~~l~~ii~~~~--e 627 (1011)
+.|.|. ...+|+.-..-+..++++. +..+... +++.++..++..+...+.. ...-.+-..+=.|+.|++ +
T Consensus 12 ~~l~d~~~~~~~klk~~~E~~~~le~~-~~~~~~~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e 89 (3550)
T KOG0889|consen 12 RRLVDVNLPIESKLKMLVEIRDFLENL-FSPESYL-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNE 89 (3550)
T ss_pred HHhccCCCchHHHHHHHHHHHHHHHHh-cChHHHH-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHH
Confidence 445554 4567877777777777765 3444555 7777777777666544311 111224456667888888 5
Q ss_pred -ccchHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHcCC
Q 001804 628 -VIPYANKLVQFFQKVWEESSGESLLQIQLLIALRNFVVALGY 669 (1011)
Q Consensus 628 -i~p~~~~L~~~L~~lw~~~~~~~~~~~~~l~~l~~l~~a~~~ 669 (1011)
++||+..++..+..+.....+++-+- ++.+++.+-+..++
T Consensus 90 ~~~~~~~~~~~~~~~vl~~dNeen~~l--~lkii~~l~r~f~~ 130 (3550)
T KOG0889|consen 90 VFKPFSQELLKVLMRVLTNDNEENAIL--CLKIITDLFRQFKS 130 (3550)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhh--HHHHHHHHHHhhch
Confidence 79999999999988887654443222 45666666554443
No 247
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=21.28 E-value=2.5e+02 Score=22.75 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhCccHHHHHh---hcCHHHHHHHHHHh
Q 001804 971 ENSVRENLQTCATLHGDSFNSTMS---RMHSSALMQLKQAL 1008 (1011)
Q Consensus 971 ~~~~~~~l~~~~~~~g~~f~~~~~---~~~~~~~~~l~~~l 1008 (1011)
.+++...+....+..|+ +++++. .++++.+++|+..+
T Consensus 28 ~e~l~~~l~~i~~~yGs-~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGS-VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHHHHHHHHHSS-HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHcCCCCHHHHHHHHHHc
Confidence 46889999999999986 888883 57999999999864
No 248
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=6.7e+02 Score=33.58 Aligned_cols=104 Identities=12% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHhHHhh--chHHHHHHHHHHHHHHHhhhCCCCchhhHHHHHHHhccCCHHHHhHHHHHHHHHHHHhhcccchhhH
Q 001804 94 LRQKLLTHLRE--ENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTKRLTADQ 171 (1011)
Q Consensus 94 Ir~~ll~~L~~--~~~~ir~~~a~~i~~Ia~~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~~rl~~~~ 171 (1011)
+-+.++....+ ....+-..++.+++.++..| +++|+.+..+++....+......+.|+..+...++.+.
T Consensus 1503 ~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a~-~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lg-------- 1573 (1621)
T KOG1837|consen 1503 LVSQLVNVLLEFYASDIVSKLLIAEIASDSVAD-KDDLKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLG-------- 1573 (1621)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHhhccCC-hhhhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc--------
Q ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHhhhhHhhhh
Q 001804 172 RNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQA 206 (1011)
Q Consensus 172 ~~l~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~ 206 (1011)
.....+.|++.|++..+-...-+.+-...+.+++.
T Consensus 1574 e~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q 1608 (1621)
T KOG1837|consen 1574 ENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQ 1608 (1621)
T ss_pred chhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHH
No 249
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.76 E-value=96 Score=30.64 Aligned_cols=58 Identities=14% Similarity=0.108 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhccCCcchHHHHHHHHHhhccC--CChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHH
Q 001804 527 IHRKVAIILGQWVSEIKDDTKRAVYCALIKLLMD--KDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSC 598 (1011)
Q Consensus 527 lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~d--~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L 598 (1011)
-.+-+..++.+|... ++ . -.+.+|.. ++..||..|++.|+.+- .+.+.-|+++++|.|
T Consensus 62 e~~e~~~lL~~W~~i-~~---~----~aLeLL~~~f~~~~VR~yAV~~L~~~s------d~eL~~yL~QLVQaL 121 (166)
T cd00870 62 EVKQALELMPKWAKI-DI---E----DALELLSPYFTNPVVRKYAVSRLKLAS------DEELLLYLLQLVQAL 121 (166)
T ss_pred HHHHHHHHHhcCCCC-CH---H----HHHHHcCccCCCHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHH
Confidence 344566778888642 21 1 22444442 47899999999998743 457888999988875
No 250
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=20.39 E-value=7.9e+02 Score=23.82 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhhcc--ccchHHHHHH
Q 001804 613 QVLNLISILIGHVSE--VIPYANKLVQ 637 (1011)
Q Consensus 613 ~l~~~l~~ii~~~~e--i~p~~~~L~~ 637 (1011)
.+.++.-.+|-++.| ++|....++.
T Consensus 40 ~v~~~~~~lV~KLnE~~FRPlF~~l~d 66 (153)
T PF08146_consen 40 SVISAFVSLVLKLNEATFRPLFLKLVD 66 (153)
T ss_pred HHHHHHHHHHHHcccchhHhHHHHHHH
Confidence 478888889999995 7998777765
No 251
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=20.28 E-value=3.1e+02 Score=27.61 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhhhccCCcchHHHHHHHHHhhcc--CCChHHHHHHHHHHHHhhhhcCCCccccccchHHHHHHH
Q 001804 526 IIHRKVAIILGQWVSEIKDDTKRAVYCALIKLLM--DKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSC 598 (1011)
Q Consensus 526 ~lR~ra~~~lg~~~~~~~~~~~~~~~~~ll~~L~--d~~~~Vr~~A~~aL~~~~~~~~~~~~~l~p~l~~il~~L 598 (1011)
--.+.+..++.+|.. +++ ... +.+|. =+|..||..|++.|+.+- .+.+.-|+++++|.|
T Consensus 59 ~e~~e~~~ll~~W~~-~~~---~~a----L~LL~~~~~~~~Vr~yAV~~L~~~~------d~~l~~yLpQLVQaL 119 (184)
T smart00145 59 DEVAQALSLLKKWAP-LDP---EDA----LELLSPKFPDPFVRAYAVERLESAS------DEELLLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHHHcCCC-CCH---HHH----HHHhCccCCCHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHH
Confidence 445677888999965 222 122 33343 147899999999998653 457888999998876
Done!