Query 001804
Match_columns 1011
No_of_seqs 248 out of 1540
Neff 9.0
Searched_HMMs 29240
Date Tue Mar 26 17:20:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001804.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1098-1102//hhsearch_pdb/001804hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wa5_C Importin alpha RE-expor 1.0 1 1 728.6 77.3 912 7-1009 3-958 (960)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 518.0 69.0 813 1-1009 3-851 (852)
3 3m1i_C Exportin-1; heat repeat 1.0 1 1 381.5 67.0 750 4-846 11-841 (1049)
4 2bpt_A Importin beta-1 subunit 1.0 1 1 377.9 59.9 720 6-838 1-763 (861)
5 2x19_B Importin-13; nuclear tr 1.0 1 1 369.8 59.9 750 5-839 20-847 (963)
6 2x1g_F Cadmus; transport prote 1.0 1 1 362.0 48.4 741 5-811 3-838 (971)
7 1qgr_A Protein (importin beta 1.0 1 1 333.8 59.4 691 10-811 2-743 (876)
8 4hat_C Exportin-1; heat repeat 1.0 1 1 324.6 67.9 751 4-846 11-841 (1023)
9 3gjx_A Exportin-1; transport, 1.0 1 1 310.9 56.4 769 4-846 23-867 (1073)
10 3ibv_A Exportin-T; karyopherin 1.0 1 1 306.6 53.1 762 4-913 1-884 (980)
No 1
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=1.00 E-value=1 Score=728.60 Aligned_cols=912 Identities=13% Similarity=0.163 Sum_probs=681.6
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98999999998608994556899999997421979099999999832888989899999999850102443456688899
Q 001804 7 DLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSVGI 86 (1011)
Q Consensus 7 d~~~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~~~~i 86 (1011)
|.+++.++|.+++|||++.| ||++|++++++|||..+|++|+.+.+. +.++|++|+++|||.|+++|+.+.++..+
T Consensus 3 d~~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~--~~~vR~~A~i~lkn~i~~~w~~~~~~~~l 78 (960)
T 1wa5_C 3 DLETVAKFLAESVIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNL--PLSTRLAGALFFKNFIKRKWVDENGNHLL 78 (960)
T ss_dssp HHHHHHHHHHHTTSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTS--CHHHHHHHHHHHHHHHHHHSBCSSSCBSS
T ss_pred CHHHHHHHHHHHCCCCHHHH--HHHHHHHHHCCCCHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 59999999997659987899--999999855599889999999865798--88899999999999998548876567889
Q ss_pred CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC-
Q ss_conf 9779999999999698523099999999999999866189884156999999832688778958999999999985005-
Q 001804 87 SNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFRTLKELSTK- 165 (1011)
Q Consensus 87 ~~e~K~~Ir~~ll~~L~~~~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~v~k~~~~~- 165 (1011)
++++|+.||+.+++++.++++.||++++.+|+.|+++|||++||+|++.|++.++++++..++++|.++++++|.+...
T Consensus 79 ~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~ 158 (960)
T 1wa5_C 79 PANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF 158 (960)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999998087999999999999999861713015799999998478988999999999999999988761
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 50366779999999999999986588699898655676631046521002388999678999999999999872579984
Q 001804 166 RLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIISGFPSDA 245 (1011)
Q Consensus 166 rl~~~~~~~~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~~~i~~~~~~~~ 245 (1011)
+-...+..+..+....++.+.++|.+..+ . ++...+ . ........+....++|+++.++..+++...
T Consensus 159 ~~~~~~~~l~~~l~~~~~~ll~~~~~~~~----~----l~~~~~---~--~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~ 225 (960)
T 1wa5_C 159 RSDELFLEIKLVLDVFTAPFLNLLKTVDE----Q----ITANEN---N--KASLNILFDVLLVLIKLYYDFNCQDIPEFF 225 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----TTCCC-------CHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHCCC---C--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 48477899999999989999999999999----9----873579---8--799999999999999999998625655999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0212101155531899999974246854-336898026999999999999999999730877644457664247888853
Q 001804 246 KCIQEVRPVKEVSPLLLNAIQSFLPYYS-SFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNK 324 (1011)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~ 324 (1011)
+ ..+..|++.+...+....+... +.++.+...++.++|.++ +.+..+.++++..|.+ +++.++++++..
T Consensus 226 ~-----~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~---~~l~~l~~~~~~~f~~--~~~~~~~~~~~~ 295 (960)
T 1wa5_C 226 E-----DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQ---ELVQLYTTRYEDVFGP--MINEFIQITWNL 295 (960)
T ss_dssp H-----HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHH---HHHHHHHHHCHHHHHH--HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH---HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_conf 9-----98999999999997689985557855331327999999999---9999999998999999--999999999999
Q ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 04988886305899999999999975024556788765446864338984344655665563227997899999999977
Q 001804 325 ITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIR 404 (1011)
Q Consensus 325 ~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~ 404 (1011)
+.+.. .....++++.++++|++.+++...++ ..|.+++++..+++.+++
T Consensus 296 l~~~~-~~~~~~~~~~~al~fl~~~~~~~~~~------------------------------~~~~~~~~l~~li~~~i~ 344 (960)
T 1wa5_C 296 LTSIS-NQPKYDILVSKSLSFLTAVTRIPKYF------------------------------EIFNNESAMNNITEQIIL 344 (960)
T ss_dssp HHHCC-SCTTSHHHHHHHHHHHHHHHTSHHHH------------------------------GGGCSHHHHHHHHHHTHH
T ss_pred HHHCC-CCCCCHHHHHHHHHHHHHHHCCHHHH------------------------------HHHCCCHHHHHHHHHHHH
T ss_conf 98437-77672899999999999996867689------------------------------987685189999999968
Q ss_pred HCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 20268953598883097766632012111102342099999999997120609999999999870288887788822698
Q 001804 405 RYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLL 484 (1011)
Q Consensus 405 ~~l~l~~~dle~we~DPee~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 484 (1011)
|+|+++++|++.|++||+||++++.++++.++.|+||+.++..++..+++.+++.+++++.+..+...+ +.+++|+.
T Consensus 345 ~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~---~~~~~w~~ 421 (960)
T 1wa5_C 345 PNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMS---DPSKNWKF 421 (960)
T ss_dssp HHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC-------CHHH
T ss_pred HHCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC---CCCHHHHH
T ss_conf 734888878998844999999863575512371889999999999970132789999999999987366---96121799
Q ss_pred HHHHHHHHHHHHHHH----------CCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 879999999525742----------3789969999998568663139985169999999998511268810099999999
Q 001804 485 KDAAYGAAAYVYYEL----------SNYLSFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIKDDTKRAVYCAL 554 (1011)
Q Consensus 485 kea~l~alg~~a~~l----------~~~~~~~~~l~~~l~~~l~~~~~~~~~lR~ra~~~lg~~~~~~~~~~~~~i~~~l 554 (1011)
|||+++++|+++++. .+.+++.+++.++++|++++++|..|+||+|+||++|+|++.++++...++++.+
T Consensus 422 reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l 501 (960)
T 1wa5_C 422 KDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPIL 501 (960)
T ss_dssp HHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999987412567741234435699999997378744998888330398999999988658999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHH--------CCCCCCCCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q ss_conf 9400378937999999999985010--------28883211242279999999997675----11225999999999999
Q 001804 555 IKLLMDKDLSVRLAACRSLCSHIED--------ANFSERDFTDLLPICWDSCFKLVEEV----QEFDSKVQVLNLISILI 622 (1011)
Q Consensus 555 l~~L~d~d~~Vr~~A~~aL~~~i~~--------~~f~~~~~~p~l~~il~~L~~ll~~~----~~~e~~~~ll~~l~~ii 622 (1011)
+++|.|++++||.+||.||..|++. .+|..+.+.||++++++.|+.++++. ........++.+++.++
T Consensus 502 ~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv 581 (960)
T 1wa5_C 502 ATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVL 581 (960)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 99848997219999999999998443644466544359875646999999999999714678776432279999999999
Q ss_pred HHHC-CCCCHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 9612-54130889999999877214---4520599999999999999807787-11146389899852188999843052
Q 001804 623 GHVS-EVIPYANKLVQFFQKVWEES---SGESLLQIQLLIALRNFVVALGYQS-HNCYSMLLPILRRGIDINSPDELNLL 697 (1011)
Q Consensus 623 ~~~~-~i~p~~~~l~~~L~~lw~~~---~~~~~l~~~il~~l~~lv~a~~~~~-~~~~~~~~pii~~~l~~~~~~~~~l~ 697 (1011)
+.++ ++.||+..+++.|...|+.. .++..++..+++|++.++.+.+++. ..+.+.++|++..+++. +..++.
T Consensus 582 ~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~---~~~~~~ 658 (960)
T 1wa5_C 582 QTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSE---DIQEFI 658 (960)
T ss_dssp HHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHT---TCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_conf 98888612479999999999999997398972788999999999996389536999999999999999986---057669
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 34999999998409999777994676899--9997322249999999889776151344231399999999996327550
Q 001804 698 EDSMLLWEATISHAPVMVPQLLAYFPCLV--EIMERSFDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDLVVGNVND 775 (1011)
Q Consensus 698 e~~l~L~~~l~~~~~~~~~~l~~Lf~~l~--~~~~~~~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~~l~~~~~ 775 (1011)
+++++++..+++..+.+++.++++||.+. .+++.. ++++.+++++++|+..|+..+.+ .+.+..++..++..-..
T Consensus 659 ~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~L~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 735 (960)
T 1wa5_C 659 PYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELK-GNIPAVTRLLKSFIKTDSSIFPD--LVPVLGIFQRLIASKAY 735 (960)
T ss_dssp HHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCT-TTHHHHHHHHHHHHHHHGGGCSC--SHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHCCC-CCCHHHHHHHHHHHHHCHHHHHH--HHHHHHHHHHHHCCCCC
T ss_conf 9999999999973547889999999998099985577-87355899999999768499999--99999999999679942
Q ss_pred HHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH-HHHHHHHHHCHHHHHHHHCCCHH
Q ss_conf 34763998999999737987-53679999999999982199889860578899999-99999998684999997004314
Q 001804 776 KGLLIILPVIDMLIQCFPIQ-VPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSA-AILARILVMNANYLAQLTSEPSL 853 (1011)
Q Consensus 776 ~~~~~~~~l~e~li~~~~~~-~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~v~~rl~~~~p~~~~~~l~~~~~ 853 (1011)
+ ..++.+++.++..+++. ..||++.++..++..+.. .+.+ .+....+ .+...++.++|+.+++.+.+..
T Consensus 736 ~--~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~---~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~- 806 (960)
T 1wa5_C 736 E--VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQN---SKTE---RYVKKLTVFFGLISNKLGSDFLIHFIDEVQ- 806 (960)
T ss_dssp H--HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGS---SCCH---HHHHHHHHHHHHHHHHHCHHHHHHHHHTTS-
T ss_pred C--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH---CCCH---HHHHHHHHHHHHHHHHCCHHHHHHHHHHCC-
T ss_conf 0--359999999999798777898899999999999831---7747---499999999999998708799999998416-
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCCCC--HHHH-HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 577753189615989999999998729999951-46999999898851694--5899-9899999999997404776544
Q 001804 854 SLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMRL--PQVL-DKLDQILSVCTSVILGGNDDLA 929 (1011)
Q Consensus 854 ~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~--p~~l-~~l~~~~~~~~~~l~~~~~~~~ 929 (1011)
+ +.+...++..||..++++.+. +||++++|||+|+..+. |..+ +.|+.+++++++++.+..+...
T Consensus 807 ---------~--~~f~~~~~~~w~~~~~~~~~~~erk~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 875 (960)
T 1wa5_C 807 ---------D--GLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASSQSIANL 875 (960)
T ss_dssp ---------T--THHHHHHHHTHHHHGGGCCSHHHHHHHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHSCSTTCS
T ss_pred ---------H--HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ---------0--58999999985366030167898999999999998651223035788899999999999708762446
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHCCCHHHH-HHHCCHHHHH
Q ss_conf 433--689843457889999999199999963309996514----748999999999999809409998-8613999999
Q 001804 930 EEE--SSGDNMSSSKYHGEGTIPSKELRRRQIKFSDPVNQL----SLENSVRENLQTCATLHGDSFNST-MSRMHSSALM 1002 (1011)
Q Consensus 930 ~~~--~~~d~~~~~~~~~~~~~~~~~~r~~~~~~~dpv~~~----~l~~~~~~~l~~~~~~~g~~f~~~-~~~~~~~~~~ 1002 (1011)
.++ +.+|. .+.+++..+............||+..+ +.+.|+++.|+.+++..++.|+++ .++++++.+.
T Consensus 876 ~~~~~e~~d~----~~~~~~~~~~~~L~~~~~~~~dp~~~i~~~~d~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 951 (960)
T 1wa5_C 876 KNDYVDLDNL----EEISTFGSHFSKLVSISEKPFDPLPEIDVNNGVRLYVAEALNKYNAISGNTFLNTILPQLTQENQV 951 (960)
T ss_dssp CCSCC---------CCCCCTTCCCCCCGGGCCCCCCSCTTSCTTTHHHHHHHHHHHHHHHHTTSCHHHHHGGGSCHHHHH
T ss_pred CCCCCCCCCC----CCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHH
T ss_conf 7753322321----001240168899881878899983441576788999999999975139724889986169999999
Q ss_pred HHHHHHH
Q ss_conf 9999840
Q 001804 1003 QLKQALK 1009 (1011)
Q Consensus 1003 ~l~~~l~ 1009 (1011)
.|+.++.
T Consensus 952 ~l~~~~~ 958 (960)
T 1wa5_C 952 KLNQLLV 958 (960)
T ss_dssp HHHHHHC
T ss_pred HHHHHHC
T ss_conf 9999872
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=517.99 Aligned_cols=813 Identities=15% Similarity=0.178 Sum_probs=583.7
Q ss_pred CCCCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 98898--99899999999860899455689999999742197909999999983-2888989899999999850102443
Q 001804 1 MALSA--SDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITA-KDLASQVDVRLMASVYFKNSINRYW 77 (1011)
Q Consensus 1 ~~~~~--~d~~~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~-~~~~~~~~vR~~A~I~lKN~I~~~W 77 (1011)
|+|+| .+++++.++|++++|||+++|++||++|++++++|+|..+|..++.+ .+ .+..+|++|+++|||.|+++|
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~--~~~~vR~~a~~~Lkn~i~~~w 80 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKS--EDEPTRSLSGLILKNNVKAHF 80 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTT--SCHHHHHHHHHHHHHHTTTSG
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHHHHCC
T ss_conf 988998423999999999873949899999999999987099889999999856688--986799999999999898744
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 45668889997799999999996985230999999999999998661898841569999998326887789589999999
Q 001804 78 RNRRDSVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMILFR 157 (1011)
Q Consensus 78 ~~~~~~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~L~~ 157 (1011)
.+ +++++|+.||+.+++++.++++.||++++.+++.|++.|+|++||++++.+.+.++++++..+++++.+|.+
T Consensus 81 ~~------~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~ 154 (852)
T 4fdd_A 81 QN------FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQK 154 (852)
T ss_dssp GG------CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHH
T ss_pred CC------CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 77------999999999999999874998999999999999999864813568999999998709998999999999999
Q ss_pred HHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998500550366--77999999999999998658869989865567663104652100238899967899999999999
Q 001804 158 TLKELSTKRLTAD--QRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQ 235 (1011)
Q Consensus 158 v~k~~~~~rl~~~--~~~~~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~~ 235 (1011)
++++.... +... .+.+..+++ .+++.+. +.+ ..++ . .+++++..
T Consensus 155 i~~~~~~~-~~~~~~~~~~~~il~---------------~l~~~l~----~~~--------~~vR---~---~A~~aL~~ 200 (852)
T 4fdd_A 155 ICEDSAEI-LDSDVLDRPLNIMIP---------------KFLQFFK----HSS--------PKIR---S---HAVACVNQ 200 (852)
T ss_dssp HHHHHTTH-HHHCSSSSCHHHHHH---------------HHTTTTT----CSS--------HHHH---H---HHHHHHHT
T ss_pred HHHHHHHH-HCHHHHCCHHHHHHH---------------HHHHHHC----CCC--------HHHH---H---HHHHHHHH
T ss_conf 99985787-563431332999999---------------9999856----797--------8999---9---99999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98725799840212101155531899999974246854336898026999999999999999999730877644457664
Q 001804 236 LIISGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLP 315 (1011)
Q Consensus 236 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~p~~f~~~~~l~ 315 (1011)
++.. .+ + .+..+++.++..+-..+. + ....+++. .++.+..+.+.+|..+.+ +++
T Consensus 201 ~~~~-~~---~------~~~~~~~~~l~~l~~~~~---d-------~~~~vr~~---a~~~L~~l~~~~~~~~~~--~l~ 255 (852)
T 4fdd_A 201 FIIS-RT---Q------ALMLHIDSFIENLFALAG---D-------EEPEVRKN---VCRALVMLLEVRMDRLLP--HMH 255 (852)
T ss_dssp TTTT-TC---H------HHHTSHHHHHHHHHHHHT---C-------CCHHHHHH---HHHHHHHHHHHCHHHHGG--GHH
T ss_pred HHHC-CC---H------HHHHHHHHHHHHHHHHCC---C-------CCHHHHHH---HHHHHHHHHHHCHHHHHH--HHH
T ss_conf 9864-63---8------799889999999998717---9-------97789999---999999999857798998--899
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 24788885304988886305899999999999975024556788765446864338984344655665563227997899
Q 001804 316 SVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERI 395 (1011)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 395 (1011)
.+++++.....+.+ +..+..++.++..+.+... .....++ .+
T Consensus 256 ~l~~~l~~~~~~~~------~~vr~~a~e~l~~l~~~~~---------------~~~~~~~-----------------~~ 297 (852)
T 4fdd_A 256 NIVEYMLQRTQDQD------ENVALEACEFWLTLAEQPI---------------CKDVLVR-----------------HL 297 (852)
T ss_dssp HHHHHHHHHHTCSS------HHHHHHHHHHHHHHTTSTT---------------HHHHHTT-----------------TH
T ss_pred HHHHHHHHHCCCCC------HHHHHHHHHHHHHHHCCHH---------------HHHHHHH-----------------HH
T ss_conf 99999998706996------8999999999999860365---------------7988788-----------------89
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999997720268953598883097766632012111102342099999999997120609999999999870288887
Q 001804 396 ILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSV 475 (1011)
Q Consensus 396 ~~l~~~li~~~l~l~~~dle~we~DPee~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~ 475 (1011)
..++. .+.+.+..+++|.+.|+.|++|...+++. .-.|++|.+++..+..++..+++.+++.+++.+.+...
T Consensus 298 ~~l~p-~ll~~l~~~e~d~~~~~~d~~ed~~~dd~-~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~------ 369 (852)
T 4fdd_A 298 PKLIP-VLVNGMKYSDIDIILLKGDVEGGSGGDDT-ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF------ 369 (852)
T ss_dssp HHHHH-HHHHHTSCCHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHT------
T ss_pred HHHHH-HHHHHCCCCHHHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC------
T ss_conf 88999-99987578676799866984432224564-01116999999999999874618789999999999855------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC----CCCHHHHH
Q ss_conf 7888226988799999995257423789-969999998568663139985169999999998511268----81009999
Q 001804 476 TEITPGLLLKDAAYGAAAYVYYELSNYL-SFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEI----KDDTKRAV 550 (1011)
Q Consensus 476 ~~~~~~~~~kea~l~alg~~a~~l~~~~-~~~~~l~~~l~~~l~~~~~~~~~lR~ra~~~lg~~~~~~----~~~~~~~i 550 (1011)
+++|..|++++.++|.++++..+.+ ++-..+.+.+++.++++++ .+|..+||++|++++.+ ...+...+
T Consensus 370 ---~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~---~Vr~~a~~~l~~l~~~~~~~~~~~~~~~l 443 (852)
T 4fdd_A 370 ---HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKA---LVRSITCWTLSRYAHWVVSQPPDTYLKPL 443 (852)
T ss_dssp ---CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSH---HHHHHHHHHHHHTHHHHHHSCTTTTHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ---998899999999999998635688998799999999987179988---99999999999999886110478999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC-
Q ss_conf 9999940037893799999999998501028883211242279999999997675112259999999999999612-54-
Q 001804 551 YCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EV- 628 (1011)
Q Consensus 551 ~~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~f~~~~~~p~l~~il~~L~~ll~~~~~~e~~~~ll~~l~~ii~~~~-~i- 628 (1011)
++.+++.|.|++..||..|+.||..+++.. .+.+.||++.++..|+.++++.+.. ....++++++.+++..| .+
T Consensus 444 l~~L~~~L~d~~~~vr~~a~~aL~~l~~~~---~~~l~~~l~~ll~~L~~~l~~~~~~-~~~~~~~ai~~l~~~~~~~~~ 519 (852)
T 4fdd_A 444 MTELLKRILDSNKRVQEAACSAFATLEEEA---CTELVPYLAYILDTLVFAFSKYQHK-NLLILYDAIGTLADSVGHHLN 519 (852)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---GGGGGGGHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999985898889999999999999973---6766767999999999999883747-999999999999997424313
Q ss_pred -CCHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH----HHHHHCC--------C--CCCC
Q ss_conf -13088999999987721445-20599999999999999807787111463898----9985218--------8--9998
Q 001804 629 -IPYANKLVQFFQKVWEESSG-ESLLQIQLLIALRNFVVALGYQSHNCYSMLLP----ILRRGID--------I--NSPD 692 (1011)
Q Consensus 629 -~p~~~~l~~~L~~lw~~~~~-~~~l~~~il~~l~~lv~a~~~~~~~~~~~~~p----ii~~~l~--------~--~~~~ 692 (1011)
.+|...+++.|.+.|+...+ +.-++ .+++|++.++.++|.....+.+.++| ++..++. + ....
T Consensus 520 ~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 598 (852)
T 4fdd_A 520 KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAP 598 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 678999988999999873330469999-9999999999997486798899999999999999999998753388666887
Q ss_pred CCHHHHHHHHHHHHHHHCCCC-CCHHH--HHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 430523499999999840999-97779--94676899999732224999-999988977615134423139999999999
Q 001804 693 ELNLLEDSMLLWEATISHAPV-MVPQL--LAYFPCLVEIMERSFDHLQV-AINIIEGYIILGGTDFLNMHASCVAKLLDL 768 (1011)
Q Consensus 693 ~~~l~e~~l~L~~~l~~~~~~-~~~~l--~~Lf~~l~~~~~~~~~~l~~-~~~il~~yi~lg~~~~l~~~~~~l~~~~~~ 768 (1011)
..++...+++++..+++..+. +.+.+ -.+++.+..++.+....+++ +...+...+...+..+.. +.+.+...+..
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~-~l~~~lp~l~~ 677 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKP-CIADFMPILGT 677 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_conf 61199999999978999874769988367718999999838998449999999999999981688898-79999999998
Q ss_pred HHCCCCCHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 632755034-7639989999997379875367999999999998219988986057889999999999998684999997
Q 001804 769 VVGNVNDKG-LLIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQL 847 (1011)
Q Consensus 769 ~l~~~~~~~-~~~~~~l~e~li~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~~~p~~~~~~ 847 (1011)
.++.-..+. ...++.+++++... +....||+..+++.++..+ ..+ ..+ ..++++.+..+||++..+|+.+.+
T Consensus 678 ~l~~~~~~v~~~a~~alg~i~~~~-~~~~~p~~~~il~~L~~~l-~~~--~~~--~~~~~~a~~~igrl~~~~~~~~~~- 750 (852)
T 4fdd_A 678 NLNPEFISVCNNATWAIGEISIQM-GIEMQPYIPMVLHQLVEII-NRP--NTP--KTLLENTAITIGRLGYVCPQEVAP- 750 (852)
T ss_dssp TCCTTSHHHHHHHHHHHHHHHHHH-GGGGGGGTHHHHHHHHHHH-TCS--SCC--HHHHHHHHHHHHHHHHHCHHHHGG-
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-CCC--CCC--CHHHHHHHHHHHHHHHHCHHHHCC-
T ss_conf 769420689999999999999971-1767878999999999985-799--887--207788999999999868897675-
Q ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHCCC
Q ss_conf 004314577753189615989999999998729999951-46999999898851694589-9989999999999740477
Q 001804 848 TSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTMRLPQV-LDKLDQILSVCTSVILGGN 925 (1011)
Q Consensus 848 l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~~~p~~-l~~l~~~~~~~~~~l~~~~ 925 (1011)
++..|+..||..+++..+. +|..++.|||.++.. +|.. +..+..+++++.+
T Consensus 751 --------------------~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~-~p~~~~~~~~~~~~~~~~------ 803 (852)
T 4fdd_A 751 --------------------MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISV-NPSGVIQDFIFFCDAVAS------ 803 (852)
T ss_dssp --------------------GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHH-CGGGTGGGHHHHHHHHHT------
T ss_pred --------------------CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHH------
T ss_conf --------------------58999999999865366607999999999999986-918688889999999870------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHCCHHHHHHH
Q ss_conf 654443368984345788999999919999996330999651474899999999999980940-9998861399999999
Q 001804 926 DDLAEEESSGDNMSSSKYHGEGTIPSKELRRRQIKFSDPVNQLSLENSVRENLQTCATLHGDS-FNSTMSRMHSSALMQL 1004 (1011)
Q Consensus 926 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~r~~~~~~~dpv~~~~l~~~~~~~l~~~~~~~g~~-f~~~~~~~~~~~~~~l 1004 (1011)
|.++ +-+|++.+++.|+++++.+|+. |++++++++|...+.|
T Consensus 804 ---------------~~~~----------------------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 846 (852)
T 4fdd_A 804 ---------------WINP----------------------KDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERL 846 (852)
T ss_dssp ---------------CSSC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHH
T ss_pred ---------------CCCC----------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHH
T ss_conf ---------------6899----------------------789999999999999876772019999872999999999
Q ss_pred HHHHH
Q ss_conf 99840
Q 001804 1005 KQALK 1009 (1011)
Q Consensus 1005 ~~~l~ 1009 (1011)
+..-|
T Consensus 847 ~~~~~ 851 (852)
T 4fdd_A 847 AAFYG 851 (852)
T ss_dssp HHTSC
T ss_pred HHHHC
T ss_conf 98709
No 3
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=1.00 E-value=1 Score=381.54 Aligned_cols=750 Identities=12% Similarity=0.151 Sum_probs=446.9
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98998999999998608994556899999997421979099999999832888989899999999850102443456688
Q 001804 4 SASDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDS 83 (1011)
Q Consensus 4 ~~~d~~~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~~ 83 (1011)
.++|++++.++|+++.+||++.|++||++|++++++|+++..+.+|+.+.. +..+|++|++.|||.|+++|..
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~s~---~~~vr~~aa~~Lk~~i~~~W~~---- 83 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFST---NPQSKFIALSILDKLITRKWKL---- 83 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSTTGGGGHHHHHHHCS---CHHHHHHHHHHHHHHHHHTGGG----
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 846599999999998689938999999999998839569999999986299---8899999999999999760704----
Q ss_pred CCCCHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8999779999999999698523---------0999999999999998661898841569999998326887789589999
Q 001804 84 VGISNEEKVHLRQKLLTHLREE---------NNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMI 154 (1011)
Q Consensus 84 ~~i~~e~K~~Ir~~ll~~L~~~---------~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~ 154 (1011)
+++++|..||+.++..+... ++.||++++.+++.|++.|||++||++++.+++.++ ++......++.+
T Consensus 84 --l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-~~~~~~~~~l~~ 160 (1049)
T 3m1i_C 84 --LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-SSVNVCENNMIV 160 (1049)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_conf --99999999999999999862776200000289999999999999997681115479999999871-585889999999
Q ss_pred HHHHHHHHHCC---CCHHHH-----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99999985005---503667-----799999999999999865886-----99898655676631046521002388999
Q 001804 155 LFRTLKELSTK---RLTADQ-----RNFAEISSHLFDYSWHLWQSD-----VQTILHGFSTVAQAYNSNALEQDHDELYL 221 (1011)
Q Consensus 155 L~~v~k~~~~~---rl~~~~-----~~~~~i~~~lf~~l~~~~~~~-----~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1011)
|..++++.... ++...| ..+..-.+.+|..+.+..... ....++.+..++.--..+. .-....+..
T Consensus 161 L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~ 239 (1049)
T 3m1i_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILEL 239 (1049)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHH
T ss_conf 9999999987260013268999999999999999999999999866888999999999999986088998-860559999
Q ss_pred HH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCCC----CCCCCHHHHHHHH--
Q ss_conf 67-------89999999999998725799840212101155531899999974-2468543----3689802699999--
Q 001804 222 TC-------ERWLLCLKIIRQLIISGFPSDAKCIQEVRPVKEVSPLLLNAIQS-FLPYYSS----FQKGHPKFWEFTK-- 287 (1011)
Q Consensus 222 ~~-------~~~~~~lk~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~----~~~~~~~~~~~~~-- 287 (1011)
.+ +....+++|+..++..+++...... ...+..|++.++..+.. .++.... .......-.+..+
T Consensus 240 l~~~~l~~~~~~~~a~~~L~~i~~~~~~~~~~~~--~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l 317 (1049)
T 3m1i_C 240 LSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLI--KRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDL 317 (1049)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHHCCCCTTCHHH--HHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf 9998689876799999999999948899503468--89999999999999988627985417877445771028999999
Q ss_pred -HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCC
Q ss_conf -99999999999997308776444576642478888530498888630589999999999997502455-6788765446
Q 001804 288 -RACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEY-KPSLTGRVMD 365 (1011)
Q Consensus 288 -k~i~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y-~~~~~~~~~~ 365 (1011)
+.+..+.+.+....+.. ..+.+ ++..+++++.......+ +.....++.|+..+.... | .+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~-~~~~~--~l~~~l~~ll~~~~~~d------~~v~~~~lefw~~l~~~l-~~~~~~------ 381 (1049)
T 3m1i_C 318 AMFLTTYLARNRALLESD-ESLRE--LLLNAHQYLIQLSKIEE------RELFKTTLDYWHNLVADL-FYEPLK------ 381 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSC-GGGHH--HHHHHHHHHHHHHTSSC------HHHHHHHHHHHHHHHHHH-HHSTTC------
T ss_pred HHHHHHHHHHHHHHHCCC-HHHHH--HHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHH-HHCHHH------
T ss_conf 999999999999998288-21479--99999999999886890------899999999999999999-746358------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHH-CCHHHHHHHCCCCCCCCCCCCCHHHH
Q ss_conf 86433898434465566556322799789999999997720268953598883-09776663201211110234209999
Q 001804 366 DSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWY-QNPEAFHHEQDMVQWTEKLRPCAEAL 444 (1011)
Q Consensus 366 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we-~DPee~~~~~~~~~~~~~~r~~a~~l 444 (1011)
+ ..+ ...+..++..+ .+.+...+ | +.|. +||.|++++...|+.+++.|.++..+
T Consensus 382 ---------~------------~~~-~~~l~~Lv~~l-l~~m~~~e-d-~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~ 436 (1049)
T 3m1i_C 382 ---------K------------HIY-EEICSQLRLVI-IENMVRPE-E-VLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1049)
T ss_dssp ---------G------------GGG-HHHHHHHHHHH-HHTCCCCT-T-CCEEECTTSCEEECSSCCHHHHHHHHHHHHH
T ss_pred ---------H------------HHH-HHHHHHHHHHH-HHHCCCCC-C-EEEEECCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf ---------9------------999-99999999999-98658996-2-0000579985048653122279999999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHH--HHH--
Q ss_conf 99999971206099999999998702888877888226988799999995257423789--969999998568--663--
Q 001804 445 YIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYL--SFKDWFNGALSL--DLS-- 518 (1011)
Q Consensus 445 l~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~kea~l~alg~~a~~l~~~~--~~~~~l~~~l~~--~l~-- 518 (1011)
+..++..+++.+++++.+.++++.+. ...+|+.+||+++++|++++++.+.. .+-..+.+.++. ++.
T Consensus 437 L~~l~~~~~~~~l~~v~~~l~~~l~~-------~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 437 LVYLTHLNVIDTEEIMISKLARQIDG-------SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99988369899999999999987277-------87898999999999999860237625579999999999987765435
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----CCCCCCCCC
Q ss_conf -139985169999999998511268--810099999999940037893799999999998501028-----883211242
Q 001804 519 -NDHPNMHIIHRKVAIILGQWVSEI--KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDAN-----FSERDFTDL 590 (1011)
Q Consensus 519 -~~~~~~~~lR~ra~~~lg~~~~~~--~~~~~~~i~~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~-----f~~~~~~p~ 590 (1011)
+++| .+|.++||++|||++.+ .+++.+.+++.++..|.+++.+||.+||.|+..+++++. .....+.||
T Consensus 510 ~~~~~---~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~ 586 (1049)
T 3m1i_C 510 KDNKA---VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1049)
T ss_dssp HHHHH---HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 66549---999889999997799998678999999999999861898789999999999999998898611567787757
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C-CCCHHHHHHHHHHHHHHHC--------C---CC-C-HHHH
Q ss_conf 279999999997675112259999999999999612--5-4130889999999877214--------4---52-0-5999
Q 001804 591 LPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS--E-VIPYANKLVQFFQKVWEES--------S---GE-S-LLQI 654 (1011)
Q Consensus 591 l~~il~~L~~ll~~~~~~e~~~~ll~~l~~ii~~~~--~-i~p~~~~l~~~L~~lw~~~--------~---~~-~-~l~~ 654 (1011)
++++++.+..++++++..+ ...++++++.++...+ + ..+|...+++++.+.|++. + +. . ....
T Consensus 587 ~~~il~~l~~~~~~~~~~~-~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~ 665 (1049)
T 3m1i_C 587 IQTIIRDIQKTTADLQPQQ-VHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIA 665 (1049)
T ss_dssp HHHHHHTHHHHHTTSCHHH-HHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHH
T ss_conf 9999998999998589999-999999999999759978999999999998899999999998731646404879999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999807787111463898998521889998430523499999999840999---977799467689999973
Q 001804 655 QLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV---MVPQLLAYFPCLVEIMER 731 (1011)
Q Consensus 655 ~il~~l~~lv~a~~~~~~~~~~~~~pii~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~---~~~~l~~Lf~~l~~~~~~ 731 (1011)
.+++|++.++.++|+. |.|.+.+++..++ +++.....++.......+. -.|..+. +.
T Consensus 666 ~~l~~~~~~~~~l~~~---f~p~~~~i~~~~l--------~~~~~~~~~~~~~~~~~g~~~~~~p~~~~-~~-------- 725 (1049)
T 3m1i_C 666 NIIKTNVAVCTSMGAD---FYPQLGHIYYNML--------QLYRAVSSMISAQVAAEGLIATKTPKVRG-LR-------- 725 (1049)
T ss_dssp HHHHHHHHHHHHHGGG---GHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHCGGGGGSHHHHH-HH--------
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHH-HH--------
T ss_conf 9999999999985678---8999999999999--------99999999899999705850221088999-99--------
Q ss_pred CHHHHHHHHHHHHHHHHCCH--HHHHHHHHH----HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 22249999999889776151--344231399----999999996327550347639989999997379875367999999
Q 001804 732 SFDHLQVAINIIEGYIILGG--TDFLNMHAS----CVAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQ 805 (1011)
Q Consensus 732 ~~~~l~~~~~il~~yi~lg~--~~~l~~~~~----~l~~~~~~~l~~~~~~~~~~~~~l~e~li~~~~~~~~~~i~~~l~ 805 (1011)
...+.+.+.+++|+.... +....++.+ .+...+.......++ ..++.++..++...+....+++..++.
T Consensus 726 --~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~---~~~l~l~~~ii~~~~~~~~~~l~~i~~ 800 (1049)
T 3m1i_C 726 --TIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARD---AEVLNCMTTVVEKVGHMIPQGVILILQ 800 (1049)
T ss_dssp --HHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCC---THHHHHHHHHHHHHGGGCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --999999999999998479779999987899999999988718963236---879999999999988760666899999
Q ss_pred HHHHHH---HCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 999998---21998898605788999999999999868499999
Q 001804 806 KLIVIC---LSGGDDHEPSKTAVKASSAAILARILVMNANYLAQ 846 (1011)
Q Consensus 806 ~l~~~~---~~~~~~~~~~~~~~~~~~~~v~~rl~~~~p~~~~~ 846 (1011)
.++... +.+.-+..| .+..+++..+++++-.+|..+.+
T Consensus 801 ~l~~~~~~~i~~~~~~~p---d~~~~~f~ll~~i~~~~~~~l~~ 841 (1049)
T 3m1i_C 801 SVFECTLDMINKDFTEYP---EHRVEFYKLLKVINEKSFAAFLE 841 (1049)
T ss_dssp HHHHHHHHHHSSCSSSSH---HHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHCCHHHCH---HHHHHHHHHHHHHHHHCHHHHHC
T ss_conf 999999999852421089---99999999999999867899975
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=377.90 Aligned_cols=720 Identities=13% Similarity=0.136 Sum_probs=472.4
Q ss_pred CCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9989999999986-089945568999999974219--7909999999983288898989999999985010244345668
Q 001804 6 SDLPAIYTLLANS-MSRDESIRKPAEAALSQSESR--PGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRD 82 (1011)
Q Consensus 6 ~d~~~l~~~L~~s-~s~d~~~rk~Ae~~L~~~~~~--pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~ 82 (1011)
||.+++.++|+++ .|||++.|++||++|++++++ |||..+|++++.+.+. +.++|++|+++|||.|+++|+.+..
T Consensus 1 Md~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~--~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 1 MSTAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENT--KLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp CCHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTS--CHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 98779999999742693979999999999999851999999999999837899--8679999999987022575748789
Q ss_pred -----CCC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf -----889-99779999999999698523099999999999999866189-88415699999983268-87789589999
Q 001804 83 -----SVG-ISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYP-REWPQLFSVLAQQLQAA-DVLTSHRIFMI 154 (1011)
Q Consensus 83 -----~~~-i~~e~K~~Ir~~ll~~L~~~~~~ir~q~a~~i~~Iar~d~P-~~WP~Ll~~L~~~l~s~-~~~~~~~al~~ 154 (1011)
+.. +++++|..||+.+++.+.++++.+|++++.+++.|++.||| +.||++++.|++.++++ ++...++++.+
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~ 158 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLA 158 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99976766299999999999999987799637999999999999984676455499999999987268978999999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999985005503667799999999999999865886998986556766310465210023889996789999999999
Q 001804 155 LFRTLKELSTKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIR 234 (1011)
Q Consensus 155 L~~v~k~~~~~rl~~~~~~~~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~ 234 (1011)
+..+++++... . + .+....+.+++.+ .+.+. ++.+ . ..++ ..+++++.
T Consensus 159 l~~l~~~~~~~-~---~-~~~~~~~~ll~~l-----------~~~l~----~~~~-----~-~~vr------~~al~~l~ 206 (861)
T 2bpt_A 159 LGYMCESADPQ-S---Q-ALVSSSNNILIAI-----------VQGAQ----STET-----S-KAVR------LAALNALA 206 (861)
T ss_dssp HHHHHHTSSTT-S---S-TTGGGHHHHHHHH-----------HHHHS----TTCC-----C-HHHH------HHHHHHHH
T ss_pred HHHHHHCCCHH-H---H-HHHHHHHHHHHHH-----------HHHHC----CCCC-----C-HHHH------HHHHHHHH
T ss_conf 99999727843-5---6-7898899999999-----------98415----7999-----8-7899------99999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99872579984021210115553189999997424685433689802699999999999999999973087764445766
Q 001804 235 QLIISGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVL 314 (1011)
Q Consensus 235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~p~~f~~~~~l 314 (1011)
.++.+. .. ... .+. .| +.++..+...+.. ..+.+++. .++.+..+.+.+|..+.+ ++
T Consensus 207 ~~~~~~-~~---~~~-~~~--~~-~~ll~~l~~~~~~----------~~~~~r~~---a~~~l~~l~~~~~~~~~~--~l 263 (861)
T 2bpt_A 207 DSLIFI-KN---NME-REG--ER-NYLMQVVCEATQA----------EDIEVQAA---AFGCLCKIMSKYYTFMKP--YM 263 (861)
T ss_dssp HHGGGC-HH---HHT-SHH--HH-HHHHHHHHHHHTC----------SCHHHHHH---HHHHHHHHHHHHGGGCHH--HH
T ss_pred HHHHHH-HH---HCC-CHH--HH-HHHHHHHHHHHCC----------CCHHHHHH---HHHHHHHHHHHHHHHHHH--HH
T ss_conf 999999-98---706-766--89-9999999998659----------98899999---999999999998899999--88
Q ss_pred C-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 4-247888853049888863058999999999999750245567887654468643389843446556655632279978
Q 001804 315 P-SVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKE 393 (1011)
Q Consensus 315 ~-~~~~~~~~~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 393 (1011)
+ .+++++.....+.+ +..+..++.++..+.....+.+.. ..+. ..++..+++ +. ..
T Consensus 264 ~~~l~~~~~~~~~~~~------~~vr~~a~~~l~~l~~~~~~~~~~----~~~~-~~~~~~~~~-----------~~-~~ 320 (861)
T 2bpt_A 264 EQALYALTIATMKSPN------DKVASMTVEFWSTICEEEIDIAYE----LAQF-PQSPLQSYN-----------FA-LS 320 (861)
T ss_dssp HHTHHHHHHHHTTCSS------HHHHHHHHHHHHHHHHHHHHHHHH----HHHC-TTCSCCCCC-----------HH-HH
T ss_pred HHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHHHHH----HHHC-CCCCHHHHH-----------HH-HH
T ss_conf 9999999999873772------789999999999999878864333----2103-577325699-----------99-99
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999977202689535988830977666320121111023420999999999971206099999999998702888
Q 001804 394 RIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCST 473 (1011)
Q Consensus 394 ~~~~l~~~li~~~l~l~~~dle~we~DPee~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~ 473 (1011)
.+..++..++ .. +++.+ +| ++++. +++|.++...+..++..+++.+++.+++.+.+..+
T Consensus 321 ~~~~il~~ll-~~--l~~~~-----~d-------~~d~~--~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~---- 379 (861)
T 2bpt_A 321 SIKDVVPNLL-NL--LTRQN-----ED-------PEDDD--WNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIT---- 379 (861)
T ss_dssp HHHHHHHHHH-HH--TTCCC-----CC--------CCCC--CHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHH-HH--HHHCC-----CC-------CCCCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC----
T ss_conf 9988999999-99--87066-----53-------01246--86899999999999987408689999999998757----
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHC-CCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-----CCCH
Q ss_conf 877888226988799999995257423-789-969999998568663139985169999999998511268-----8100
Q 001804 474 SVTEITPGLLLKDAAYGAAAYVYYELS-NYL-SFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEI-----KDDT 546 (1011)
Q Consensus 474 ~~~~~~~~~~~kea~l~alg~~a~~l~-~~~-~~~~~l~~~l~~~l~~~~~~~~~lR~ra~~~lg~~~~~~-----~~~~ 546 (1011)
+++|..|++++.++|.++++.. +.+ ++-..+.+.+++.+.++++ .+|.+++|++|+++..+ +...
T Consensus 380 -----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~---~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 380 -----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL---QVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp -----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCH---HHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred -----CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf -----9972699999999999985998788899899999999988289959---99999999999999873540487888
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 99999999940037893799999999998501028-88321124227999999999767511-22599999999999996
Q 001804 547 KRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDAN-FSERDFTDLLPICWDSCFKLVEEVQE-FDSKVQVLNLISILIGH 624 (1011)
Q Consensus 547 ~~~i~~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~-f~~~~~~p~l~~il~~L~~ll~~~~~-~e~~~~ll~~l~~ii~~ 624 (1011)
...+++.++..+.|+ ..||.+||.++..+++... ...+.+.||++.++..|+.++++.+. .+.+..++.+++.+++.
T Consensus 452 ~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 452 LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999976447-2899999999999998623135424689999999999999857586158999999999999997
Q ss_pred HC-CCCCHHHHHHHHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 12-54130889999999877214-------------45205999999999999998077871114638989985218899
Q 001804 625 VS-EVIPYANKLVQFFQKVWEES-------------SGESLLQIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINS 690 (1011)
Q Consensus 625 ~~-~i~p~~~~l~~~L~~lw~~~-------------~~~~~l~~~il~~l~~lv~a~~~~~~~~~~~~~pii~~~l~~~~ 690 (1011)
.+ ++.||...+++.+.+.|.+. ++...++..++++++.++..+|..-..+.+.++|.+...++..+
T Consensus 531 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 610 (861)
T 2bpt_A 531 ATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKD 610 (861)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 62656999999999999999988753201388556777999999999999999998556347899999999999974678
Q ss_pred CCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9843052349999999984099-99777994676899999732-224999999988977615134423139999999999
Q 001804 691 PDELNLLEDSMLLWEATISHAP-VMVPQLLAYFPCLVEIMERS-FDHLQVAINIIEGYIILGGTDFLNMHASCVAKLLDL 768 (1011)
Q Consensus 691 ~~~~~l~e~~l~L~~~l~~~~~-~~~~~l~~Lf~~l~~~~~~~-~~~l~~~~~il~~yi~lg~~~~l~~~~~~l~~~~~~ 768 (1011)
++ .+.+.++..+..++...+ .+.|.+-.++|.+...+.+. .+....++.++...+......+. .+.+.+...+..
T Consensus 611 ~~--~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~l~~~l~~ 687 (861)
T 2bpt_A 611 SA--FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFR-RYSDAMMNVLAQ 687 (861)
T ss_dssp GG--GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGH-HHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHCC-CHHHHHHHHHHH
T ss_conf 87--579999999999999976609999999999999886556678999999999999987454031-119999999999
Q ss_pred HHCCC--CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHHH
Q ss_conf 63275--503476399899999973798753679999999999982199889860----57889999999999998
Q 001804 769 VVGNV--NDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVICLSGGDDHEPS----KTAVKASSAAILARILV 838 (1011)
Q Consensus 769 ~l~~~--~~~~~~~~~~l~e~li~~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~----~~~~~~~~~~v~~rl~~ 838 (1011)
.+.+. +.+-...+...+..+....+....+|++.+++.++..+.......+.+ ...++..++..++.++.
T Consensus 688 ~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~ 763 (861)
T 2bpt_A 688 MISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVA 763 (861)
T ss_dssp HHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7278655676659999999999998405089999999999999973678999758899999999999999999999
No 5
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=1.00 E-value=1 Score=369.82 Aligned_cols=750 Identities=13% Similarity=0.134 Sum_probs=442.8
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8998999999998-608994556899999997421979099999999832888989899999999850102443456688
Q 001804 5 ASDLPAIYTLLAN-SMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDS 83 (1011)
Q Consensus 5 ~~d~~~l~~~L~~-s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~~ 83 (1011)
++|++++.++++. ..++|++.|++||++|++++++|+++.++..++.+.. +..+|++|++.|||.|+++|..
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~---~~~vr~~aa~~L~~~i~~~w~~---- 92 (963)
T 2x19_B 20 DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK---VPEIQYFGASALHIKISRYWSD---- 92 (963)
T ss_dssp CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTS---CHHHHHHHHHHHHHHHHHCGGG----
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHCHHH----
T ss_conf 755999999999983597989999999999998469999999999865797---2588999999999999738874----
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC-----CCHHHHHHHHHHH
Q ss_conf 899977999999999969852---30999999999999998661898841569999998326-----8877895899999
Q 001804 84 VGISNEEKVHLRQKLLTHLRE---ENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQA-----ADVLTSHRIFMIL 155 (1011)
Q Consensus 84 ~~i~~e~K~~Ir~~ll~~L~~---~~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s-----~~~~~~~~al~~L 155 (1011)
+++++|..||+.+++.+.+ .++.||++++.+++.|++.|||++||++++.+++.+++ +++.....++.+|
T Consensus 93 --l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL 170 (963)
T 2x19_B 93 --IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELL 170 (963)
T ss_dssp --SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf --999999999999999999874898899999999999999874831155599999999864335787478899999999
Q ss_pred HHHHHHHHCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH-
Q ss_conf 99999850055036677-----99999999999999865886------9989865567663104652100238899967-
Q 001804 156 FRTLKELSTKRLTADQR-----NFAEISSHLFDYSWHLWQSD------VQTILHGFSTVAQAYNSNALEQDHDELYLTC- 223 (1011)
Q Consensus 156 ~~v~k~~~~~rl~~~~~-----~~~~i~~~lf~~l~~~~~~~------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~- 223 (1011)
..++++....++...++ .+....+.+++.+.++.... ....+..+..++.-+.+ .......+...+
T Consensus 171 ~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~--~~~~~~ll~~l~~ 248 (963)
T 2x19_B 171 TVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP--LQDCEALIQAAFA 248 (963)
T ss_dssp HHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC--GGGTHHHHHHHHH
T ss_pred HHCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC--CCCCHHHHHHHHH
T ss_conf 86899885065869999999999998788999999999827788057999999999999828998--5341689999999
Q ss_pred -----HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -----899999999999987257998402121011555318999999742468543368980269999999999999999
Q 001804 224 -----ERWLLCLKIIRQLIISGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLV 298 (1011)
Q Consensus 224 -----~~~~~~lk~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~i~~~~k~~~ 298 (1011)
+....+++++..++.. ..... ....+..+++.++.....+.... ... +. +.+ ..+++++.
T Consensus 249 ~l~~~~~~~~a~~~l~~i~~~-~~~~~----~~~~~~~l~~~~~~~~~~~~~~~---~~~--d~-~~~----~~~~~l~~ 313 (963)
T 2x19_B 249 ALQDSELFDSSVEAIVNAISQ-PDAQR----YVNTLLKLIPLVLGLQEQLRQAV---QNG--DM-ETS----HGICRIAV 313 (963)
T ss_dssp HTTSTTTHHHHHHHHHHHHTC-TTGGG----CHHHHHHHHHHHHTTHHHHHHHH---HTT--CH-HHH----HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCC-CCCCC----CHHHHHHHHHHHHHHHHHHHHHH---HCC--CH-HHH----HHHHHHHH
T ss_conf 867964799999999999753-11245----77999999999974079999999---877--98-999----99999999
Q ss_pred HHHHCCCCCCC----CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 99730877644----45766424788885304988886305899999999999975024556788765446864338984
Q 001804 299 AIQGRHPYTFG----DKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQM 374 (1011)
Q Consensus 299 ~~~~~~p~~f~----~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~ 374 (1011)
.+.+.++..+. .+..+...++++..+..++.... .-+.....++.|+..++......+ +..
T Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~-~~~~v~~~~l~fw~~l~~~~~~~~--------------~~~ 378 (963)
T 2x19_B 314 ALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYP-VNETTSSLTLTFWYTLQDDILSFE--------------AEK 378 (963)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTT-TTCGGGGGGHHHHHHHHHHHTTSC--------------HHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHH--------------HHH
T ss_conf 99998699997375565899999999999975888887-203454412999999999998623--------------444
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC-HHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 344655665563227997899999999977202689-5359888309776663201211110234209999999999712
Q 001804 375 KKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLT-ASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHS 453 (1011)
Q Consensus 375 k~~~~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~-~~dle~we~DPee~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~ 453 (1011)
++... ..+ ...+..++..++.+. ... +++++.|++|+ .+.|. +.|.++..++..+...++
T Consensus 379 ~~~~~--------~~~-~~~l~~l~~~ll~~~-~~p~~~~~~~~~~de--------~~~~~-~~r~~~~~~L~~~~~~~~ 439 (963)
T 2x19_B 379 QAVYQ--------QVY-RPVYFQLVDVLLHKA-QFPSDEEYGFWSSDE--------KEQFR-IYRVDISDTLMYVYEMLG 439 (963)
T ss_dssp HHHHH--------HHH-HHHHHHHHHHHHHHH-SCCCHHHHHTSCHHH--------HHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHH--------HHH-HHHHHHHHHHHHHHH-CCCCCCCCCCCCHHH--------HHHHH-HHHHHHHHHHHHHHHHCC
T ss_conf 57889--------999-999999999999998-099830226777638--------99999-999999999999999706
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHHCCCCCCHHHHHHH
Q ss_conf 060999999999987028888778882269887999999952574237899699999985--686631399851699999
Q 001804 454 QLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGAL--SLDLSNDHPNMHIIHRKV 531 (1011)
Q Consensus 454 ~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~kea~l~alg~~a~~l~~~~~~~~~l~~~l--~~~l~~~~~~~~~lR~ra 531 (1011)
+.+++.+.+.+.+..+... +..+|+.+||+++++|++++++.+... +++...+ ++.+.+++ +.+|.++
T Consensus 440 ~~~l~~~~~~l~~~l~~~~-----~~~~w~~~eaal~al~~i~~~~~~~~~--~~l~~l~~~l~~l~~~~---~~vr~~~ 509 (963)
T 2x19_B 440 AELLSNLYDKLGRLLTSSE-----EPYSWQHTEALLYGFQSIAETIDVNYS--DVVPGLIGLIPRISISN---VQLADTV 509 (963)
T ss_dssp HHHHHHHHHHHHHHHHTCC-----CSCCHHHHHHHHHHHHHHTTSCCSSCC--SHHHHHHHHGGGSCCCS---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHCCCCC---HHHHHHH
T ss_conf 8999999999999997257-----998667998999999999704382246--78999999998579985---8999999
Q ss_pred HHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH-HH
Q ss_conf 99998511268--8100999999999400378937999999999985010288832112422799999999976751-12
Q 001804 532 AIILGQWVSEI--KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEEVQ-EF 608 (1011)
Q Consensus 532 ~~~lg~~~~~~--~~~~~~~i~~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~f~~~~~~p~l~~il~~L~~ll~~~~-~~ 608 (1011)
||++|+|++.+ .+++.+.+++.++..|.+ .+|+.+||.|+..++++. .+.+.||++++++.|..++++.. ..
T Consensus 510 ~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~---~~~l~p~~~~il~~l~~~l~~~~~~~ 584 (963)
T 2x19_B 510 MFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICREC---KYDLPPYAANIVAVSQDVLMKQIHKT 584 (963)
T ss_dssp HHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT---GGGCTTTHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 9999988888875889899999999987178--468999999999999998---99877669999999999863578984
Q ss_pred HHHHHHHHHHHHHHHHHC-C-CCCHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHCCCCC---------
Q ss_conf 259999999999999612-5-4130889999999877214------4520599999999999999807787---------
Q 001804 609 DSKVQVLNLISILIGHVS-E-VIPYANKLVQFFQKVWEES------SGESLLQIQLLIALRNFVVALGYQS--------- 671 (1011)
Q Consensus 609 e~~~~ll~~l~~ii~~~~-~-i~p~~~~l~~~L~~lw~~~------~~~~~l~~~il~~l~~lv~a~~~~~--------- 671 (1011)
+.+..++++++.++...+ + ..||...+++++.+.|++. ++........+++++.++.+++...
T Consensus 585 ~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~ 664 (963)
T 2x19_B 585 SQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPE 664 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC-------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88999999999999629999999999999989999999998278987789999999999999997748986433222322
Q ss_pred -------------CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf -------------11146389899852188999843052349999999984099-9977799467689999973222499
Q 001804 672 -------------HNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAP-VMVPQLLAYFPCLVEIMERSFDHLQ 737 (1011)
Q Consensus 672 -------------~~~~~~~~pii~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~-~~~~~l~~Lf~~l~~~~~~~~~~l~ 737 (1011)
..+.+.++|++..+++.. ....+..+.++.++..++...+ .+.|-+-.+++.+...+... ...
T Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~ 741 (963)
T 2x19_B 665 LRKLPVPQGPNPVVVVLQQVFQLIQKVLSKW-LNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI--PQA 741 (963)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS--CCH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC--CCC
T ss_conf 1247777889946999999999999999856-6746899999999999997501034240799999999998757--850
Q ss_pred HHHHHHHHHHH--CCHHH---HHHHHHHHHHHHHHHHH-CCCC--CHHHHHHHHHHHHHHHHCCCCC--HHH-HHHHHHH
Q ss_conf 99999889776--15134---42313999999999963-2755--0347639989999997379875--367-9999999
Q 001804 738 VAINIIEGYII--LGGTD---FLNMHASCVAKLLDLVV-GNVN--DKGLLIILPVIDMLIQCFPIQV--PPL-ISCSLQK 806 (1011)
Q Consensus 738 ~~~~il~~yi~--lg~~~---~l~~~~~~l~~~~~~~l-~~~~--~~~~~~~~~l~e~li~~~~~~~--~~~-i~~~l~~ 806 (1011)
.++.++..++. ..... .+......+....-.++ .+.. .+-......++..+++.++..+ .+. ++.++..
T Consensus 742 ~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~ 821 (963)
T 2x19_B 742 SALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQC 821 (963)
T ss_dssp HHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHH
T ss_conf 89999999999857780137899999999999999998627655863899999999999975839872985147999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999982199889860578899999999999986
Q 001804 807 LIVICLSGGDDHEPSKTAVKASSAAILARILVM 839 (1011)
Q Consensus 807 l~~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~~ 839 (1011)
++..+ +. ..+ .+....+..+.+++-.
T Consensus 822 ~~~~l-~~---~~~---~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 822 AVLAL-KF---PEA---PTVKASCGFFTELLPR 847 (963)
T ss_dssp HHHHT-TC---SCH---HHHHHHHHHHHHHGGG
T ss_pred HHHHC-CC---CCH---HHHHHHHHHHHHHHHC
T ss_conf 99975-78---977---9999999999999851
No 6
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=361.98 Aligned_cols=741 Identities=11% Similarity=0.110 Sum_probs=432.0
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 89989999999986089945568999999974219790999999998328889898999999998501024434566888
Q 001804 5 ASDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDSV 84 (1011)
Q Consensus 5 ~~d~~~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~~~ 84 (1011)
++|++++.++++...+||++.|++||++|++++++|+++.++.+|+.+.. +..+|++|++.|||.|+++|..
T Consensus 3 ~~d~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~~~---~~~vr~~aa~~L~~~i~~~w~~----- 74 (971)
T 2x1g_F 3 PIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQLGK---SQEVQFFGAITLHSKLMKHWHE----- 74 (971)
T ss_dssp --------CTHHHHHTSTTTC----CHHHHHTTTSTHHHHHHHHHTCTTS---CHHHHHHHHHHHHHHHHHCGGG-----
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHCCHHH-----
T ss_conf 65599999999987699999999999999998749798999999983599---4989999999999999715864-----
Q ss_pred CCCHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC------CHHHHHHHHHHH
Q ss_conf 99977999999999969852---309999999999999986618988415699999983268------877895899999
Q 001804 85 GISNEEKVHLRQKLLTHLRE---ENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAA------DVLTSHRIFMIL 155 (1011)
Q Consensus 85 ~i~~e~K~~Ir~~ll~~L~~---~~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~------~~~~~~~al~~L 155 (1011)
+++++|..||+.+++.+.+ .++.||++++.+++.|++.+|| .||++++.+.+.++++ ++.....++.+|
T Consensus 75 -l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL 152 (971)
T 2x1g_F 75 -VPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVL 152 (971)
T ss_dssp -CCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC----CHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf -99999999999999999986799878999999999999997062-2437999999997153345678788999999999
Q ss_pred HHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998500550366-7799999999999999865886998986556766310465210023889996789999999999
Q 001804 156 FRTLKELSTKRLTAD-QRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIR 234 (1011)
Q Consensus 156 ~~v~k~~~~~rl~~~-~~~~~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~ 234 (1011)
..++++....+ ... |..+...+...++.+.+ ++.+.++.....+....... . ...++||+.
T Consensus 153 ~~l~EEi~~~~-~~~~r~~~~~~l~~~~~~vl~-----------ll~~~l~~~~~~~~~~~~~~---~---~~~al~~l~ 214 (971)
T 2x1g_F 153 TAIPEEAQVIH-TSVKRVVLRAEIAKRVQLVIH-----------TVERYLKLQMNRVWDAEAYS---N---MNRAVKCVG 214 (971)
T ss_dssp HHHHHHHHHCC-CSSCHHHHHHHHHTTHHHHHH-----------HHHHHHHHHTTSCCCHHHHH---H---HHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHCCCCCCCCCCCHH---H---HHHHHHHHH
T ss_conf 98599882468-578999999999987999999-----------99999855467888864236---7---999999999
Q ss_pred HHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 99872-579984021210115553189999997-424685-4336898026999999999999999999730877-6444
Q 001804 235 QLIIS-GFPSDAKCIQEVRPVKEVSPLLLNAIQ-SFLPYY-SSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPY-TFGD 310 (1011)
Q Consensus 235 ~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~-~~~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~p~-~f~~ 310 (1011)
.++.+ +.|.. ....+++.++. +. ++++.. ...++........++. ..++.+..+++..+. .+.+
T Consensus 215 ~~~~~~~ip~~--------~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~---~a~~~l~~i~~~~~~~~~~~ 282 (971)
T 2x1g_F 215 TWIKNIGYTIE--------GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAE---SCLKTMVNIIIQPDCHNYPK 282 (971)
T ss_dssp HHHHHSCCCGG--------GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHH---HHHHHHHHHHHCSGGGGCHH
T ss_pred HHHHHCCCCCC--------CCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCHHHH---HHHHHHHHHHCCCCCCCCHH
T ss_conf 99825783865--------66319999986-43553023235665556767747999---99999999976801132088
Q ss_pred --CCCCCHHHHHHHHHH---CCCCC---C-----CCCHHHHH-------------------HHHHHHHHHHHHCCCC---
Q ss_conf --576642478888530---49888---8-----63058999-------------------9999999997502455---
Q 001804 311 --KCVLPSVVDFCLNKI---TAPEP---D-----IFSFEQFL-------------------IQCMVLVKSVLECKEY--- 355 (1011)
Q Consensus 311 --~~~l~~~~~~~~~~~---~~~~~---~-----~~~~e~~~-------------------~~~l~ll~~~l~~~~y--- 355 (1011)
..+++..+++...+. .+.+. + +..+..+. .....++..++.+..+
T Consensus 283 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~ 362 (971)
T 2x1g_F 283 TAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGI 362 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999998689999998565654068999999999999999999999873157653549999999999999758888
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCC
Q ss_conf 6788765446864338984344655----665563227997899999999977202689535988830977666320121
Q 001804 356 KPSLTGRVMDDSGVTLEQMKKNISN----VVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMV 431 (1011)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~k~~~~~----~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~DPee~~~~~~~~ 431 (1011)
.+.. ..+...+...|-........ .........+ ...+..++..++.+...-+++|.+.| |++| + +
T Consensus 363 ~~~~-~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~l~~~~~~p~~~~~~~~--d~~e--~----~ 432 (971)
T 2x1g_F 363 YPVE-ESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI-KPLYAHLTRILVRKSEQPDEKSLAKW--SSDD--L----E 432 (971)
T ss_dssp TTTT-CTTHHHHHHHHHHHHHHHHC-------CHHHHHH-HHHHHHHHHHHHHHTSCCCTTTTSCS--CHHH--H----H
T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCC--CHHH--H----H
T ss_conf 8863-1245878999999999997413310008999999-99999999999998619996243356--7757--9----9
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHH
Q ss_conf 111023420999999999971206099999999998702888877888226988799999995257423789-9699999
Q 001804 432 QWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYL-SFKDWFN 510 (1011)
Q Consensus 432 ~~~~~~r~~a~~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~kea~l~alg~~a~~l~~~~-~~~~~l~ 510 (1011)
.+ .+.|.++..++.+++..+++.+++.+++.+++..+... .+..+|+.+||+++++|++++++.+.. +.-..+.
T Consensus 433 ~f-~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~----~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~ 507 (971)
T 2x1g_F 433 CF-RCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQ----RHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLM 507 (971)
T ss_dssp HH-HHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHH----HCTTCCHHHHHHHHHHHHTTTC------CHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99-99999999999999999709999999999999997346----89873899999999999998354803347799999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 98568663139985169999999998511268--8100999999999400378937999999999985010288832112
Q 001804 511 GALSLDLSNDHPNMHIIHRKVAIILGQWVSEI--KDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDANFSERDFT 588 (1011)
Q Consensus 511 ~~l~~~l~~~~~~~~~lR~ra~~~lg~~~~~~--~~~~~~~i~~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~f~~~~~~ 588 (1011)
+ +++.+...+ ..+.+|.++||++|+|++.+ .+++.+++++.++..| + .+|+.+||.|+..++++. .+.+.
T Consensus 508 ~-~l~~l~~~d-~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~---~~~l~ 579 (971)
T 2x1g_F 508 R-VLAEIPYEK-LNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDC---QLQLK 579 (971)
T ss_dssp H-HHHHSCTTT-SCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHC---HHHHH
T ss_pred H-HHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-C--HHHHHHHHHHHHHHHHHH---HHHCC
T ss_conf 9-998567653-67899999999999878888608898999999999874-8--588999999999999998---88623
Q ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHC-C-CCCHHHHHHHHHHHHHHHC------C-CCCHHHHHHHH
Q ss_conf 422799999999976751-12259999999999999612-5-4130889999999877214------4-52059999999
Q 001804 589 DLLPICWDSCFKLVEEVQ-EFDSKVQVLNLISILIGHVS-E-VIPYANKLVQFFQKVWEES------S-GESLLQIQLLI 658 (1011)
Q Consensus 589 p~l~~il~~L~~ll~~~~-~~e~~~~ll~~l~~ii~~~~-~-i~p~~~~l~~~L~~lw~~~------~-~~~~l~~~il~ 658 (1011)
||++++++.++.++++.. ..+.+..++++++.++...+ + ..||...+++++.+.|++. + +........++
T Consensus 580 p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~ 659 (971)
T 2x1g_F 580 PYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLN 659 (971)
T ss_dssp HHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 00799999999997278999289999999999999729999999999999989999999998568998225999999999
Q ss_pred HHHHHHHHCCCC----------C---CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q ss_conf 999999980778----------7---1114638989985218899984305234999999998409-9997779946768
Q 001804 659 ALRNFVVALGYQ----------S---HNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHA-PVMVPQLLAYFPC 724 (1011)
Q Consensus 659 ~l~~lv~a~~~~----------~---~~~~~~~~pii~~~l~~~~~~~~~l~e~~l~L~~~l~~~~-~~~~~~l~~Lf~~ 724 (1011)
+++.++.+++.. + ..+.+.++|++..+++.. +....+.+.++.+|..++... +.+.|-++.+++.
T Consensus 660 ~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 738 (971)
T 2x1g_F 660 MISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW-VEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLF 738 (971)
T ss_dssp HHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999841677768533345678836999999999999999864-36378999999999999986144042527899999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHC-CHHH-H---HHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHC
Q ss_conf 9999973222499999998897761-5134-4---2313999999999963275-------5034763998999999737
Q 001804 725 LVEIMERSFDHLQVAINIIEGYIIL-GGTD-F---LNMHASCVAKLLDLVVGNV-------NDKGLLIILPVIDMLIQCF 792 (1011)
Q Consensus 725 l~~~~~~~~~~l~~~~~il~~yi~l-g~~~-~---l~~~~~~l~~~~~~~l~~~-------~~~~~~~~~~l~e~li~~~ 792 (1011)
+...+... +. ..++.++...+.. |... . +......+...+-.++... .++-......++..+++.+
T Consensus 739 l~~~~~~~-~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~ 816 (971)
T 2x1g_F 739 IVASFQTR-CC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKI 816 (971)
T ss_dssp HHHHCC---CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHCC-CC-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99998668-83-49999999999995889005899999999999999999860654677648448999999999999868
Q ss_pred CCCC--HHH-HHHHHHHHHHHH
Q ss_conf 9875--367-999999999998
Q 001804 793 PIQV--PPL-ISCSLQKLIVIC 811 (1011)
Q Consensus 793 ~~~~--~~~-i~~~l~~l~~~~ 811 (1011)
|..+ .++ ++.+++..+..+
T Consensus 817 p~~~~~s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 817 PQVLEDKTLAYDRLVFYAQRGM 838 (971)
T ss_dssp GGGGGCTTSCHHHHHHHHHHHH
T ss_pred CHHHCCCCCCHHHHHHHHHHHC
T ss_conf 5998188212899999999982
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=333.78 Aligned_cols=691 Identities=13% Similarity=0.132 Sum_probs=448.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCC-----CC
Q ss_conf 999999986089945568999999974219--79099999999832888989899999999850102443456-----68
Q 001804 10 AIYTLLANSMSRDESIRKPAEAALSQSESR--PGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNR-----RD 82 (1011)
Q Consensus 10 ~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~--pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~-----~~ 82 (1011)
++.++|+++.|+|+++|++|+++|+++..+ |+|..+|++++.+.+. +..+|++|+++|||.+...|..+ ..
T Consensus 2 ~l~~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~--~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~ 79 (876)
T 1qgr_A 2 ELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGN--SQVARVAAGLQIKNSLTSKDPDIKAQYQQR 79 (876)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS--CHHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 689999976298989999999999998716804699999999857899--879999999999876055434767899864
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Q ss_conf 88999779999999999698523099999999999999866189-88415699999983268--8778958999999999
Q 001804 83 SVGISNEEKVHLRQKLLTHLREENNQVAQMLAVLISKIARFDYP-REWPQLFSVLAQQLQAA--DVLTSHRIFMILFRTL 159 (1011)
Q Consensus 83 ~~~i~~e~K~~Ir~~ll~~L~~~~~~ir~q~a~~i~~Iar~d~P-~~WP~Ll~~L~~~l~s~--~~~~~~~al~~L~~v~ 159 (1011)
|..+++++|+.||+.+++.+.+++..+ ++.+.+++.|++.++| .+||++++.+.+.++++ ++..+.+++.++..++
T Consensus 80 w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 80 WLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 406999999999999999867994788-9999999999984676225688999999987088987999999999999998
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98500550366779999999999999986588699898655676631046521002388999678999999999999872
Q 001804 160 KELSTKRLTADQRNFAEISSHLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCERWLLCLKIIRQLIIS 239 (1011)
Q Consensus 160 k~~~~~rl~~~~~~~~~i~~~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~l~~~i~~ 239 (1011)
+++.. ..+....+.+++. +.+.+ +++.+ . ..++ ..+++++..++.+
T Consensus 159 ~~~~~-------~~~~~~~~~ll~~-----------l~~~l----~~~~~-----~-~~vr------~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 159 QDIDP-------EQLQDKSNEILTA-----------IIQGM----RKEEP-----S-NNVK------LAATNALLNSLEF 204 (876)
T ss_dssp HHSCH-------HHHGGGHHHHHHH-----------HHHHH----STTCS-----C-HHHH------HHHHHHHHHHGGG
T ss_pred HHCCH-------HHHHHHHHHHHHH-----------HHHHH----CCCCC-----C-HHHH------HHHHHHHHHHHHH
T ss_conf 74587-------6678679999999-----------99861----67999-----8-8999------9999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-HHH
Q ss_conf 5799840212101155531899999974246854336898026999999999999999999730877644457664-247
Q 001804 240 GFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGDKCVLP-SVV 318 (1011)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~p~~f~~~~~l~-~~~ 318 (1011)
+.. .... ..|.+.++..+...+. + ..+.+++. .++.+..+.+.+|..+.+ +++ .++
T Consensus 205 -~~~---~~~~----~~~~~~il~~l~~~~~---~-------~~~~vr~~---a~~~l~~l~~~~~~~~~~--~~~~~l~ 261 (876)
T 1qgr_A 205 -TKA---NFDK----ESERHFIMQVVCEATQ---C-------PDTRVRVA---ALQNLVKIMSLYYQYMET--YMGPALF 261 (876)
T ss_dssp -CHH---HHTS----HHHHHHHHHHHHHHTT---C-------SSHHHHHH---HHHHHHHHHHHSGGGCHH--HHTTTHH
T ss_pred -HHH---HHHH----HHHHHHHHHHHHHHCC---C-------CCHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_conf -999---8871----7899999999998717---9-------98899999---999999999986999998--8778999
Q ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 88885304988886305899999999999975024556788765446864338984344655665563227997899999
Q 001804 319 DFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILL 398 (1011)
Q Consensus 319 ~~~~~~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l 398 (1011)
+++.....+.+ +..+..++.++..+.+..... ...++ ....+......... .+. ...+..+
T Consensus 262 ~~~~~~~~~~~------~~v~~~al~~l~~l~~~~~~~-----~~~~~--~~~~~~~~~~~~~~-----~~~-~~~~~~l 322 (876)
T 1qgr_A 262 AITIEAMKSDI------DEVALQGIEFWSNVCDEEMDL-----AIEAS--EAAEQGRPPEHTSK-----FYA-KGALQYL 322 (876)
T ss_dssp HHHHHHHTCSS------HHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHSSCCSSCCC-----CHH-HHHHHHH
T ss_pred HHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHHH-----HHHHC--CCCCCCCCCCCHHH-----HHH-HHHHHHH
T ss_conf 99999963873------499999999999998878767-----66510--01124777542018-----999-9989887
Q ss_pred HHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99997720268953598883097766632012111102342099999999997120609999999999870288887788
Q 001804 399 CNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEI 478 (1011)
Q Consensus 399 ~~~li~~~l~l~~~dle~we~DPee~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~ 478 (1011)
+..+ ++.+. +.+ +|+ +++. |+.|.++...+..++..+++.+++.+++.+.+...
T Consensus 323 l~~l-l~~l~--~~~-----~d~-------~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~--------- 376 (876)
T 1qgr_A 323 VPIL-TQTLT--KQD-----END-------DDDD--WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIK--------- 376 (876)
T ss_dssp HHHH-HHHTT--CCC-----SSC-------CTTC--CCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTT---------
T ss_pred HHHH-HHHHH--CCC-----CCC-------CCCC--CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC---------
T ss_conf 0799-98753--133-----444-------5452--17999999999999987758669999999998846---------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCC-CHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC-----CCHHHHHH
Q ss_conf 8226988799999995257423-789-9699999985686631399851699999999985112688-----10099999
Q 001804 479 TPGLLLKDAAYGAAAYVYYELS-NYL-SFKDWFNGALSLDLSNDHPNMHIIHRKVAIILGQWVSEIK-----DDTKRAVY 551 (1011)
Q Consensus 479 ~~~~~~kea~l~alg~~a~~l~-~~~-~~~~~l~~~l~~~l~~~~~~~~~lR~ra~~~lg~~~~~~~-----~~~~~~i~ 551 (1011)
.++|..|++++.++|.++.+.. +.+ ++-..+.+.+++.++++++ .+|.++||++|++++.++ ..+...++
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~---~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV---VVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSH---HHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHCCHHCCCHHHHHHHH
T ss_conf 9982899999999999974887778999999999999998679978---9999999999999985720114477799999
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----------CCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q ss_conf 999940037893799999999998501028-----------8832112422799999999976751--122599999999
Q 001804 552 CALIKLLMDKDLSVRLAACRSLCSHIEDAN-----------FSERDFTDLLPICWDSCFKLVEEVQ--EFDSKVQVLNLI 618 (1011)
Q Consensus 552 ~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~-----------f~~~~~~p~l~~il~~L~~ll~~~~--~~e~~~~ll~~l 618 (1011)
+.+++.+.|+ ..||..|+.++..+++... ...+.+.||++.++..|+.++.+.+ ....+..+++++
T Consensus 454 ~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l 532 (876)
T 1qgr_A 454 QCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESL 532 (876)
T ss_dssp HHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999987588-889999999999999985020123444455540321576999999999997276742046999999999
Q ss_pred HHHHHHHC-CCCCHHHHHHHHHHHHHHHC---------CCC----CHHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHH
Q ss_conf 99999612-54130889999999877214---------452----0599999999999999807-787111463898998
Q 001804 619 SILIGHVS-EVIPYANKLVQFFQKVWEES---------SGE----SLLQIQLLIALRNFVVALG-YQSHNCYSMLLPILR 683 (1011)
Q Consensus 619 ~~ii~~~~-~i~p~~~~l~~~L~~lw~~~---------~~~----~~l~~~il~~l~~lv~a~~-~~~~~~~~~~~pii~ 683 (1011)
+.++...| +..||...+++.+...|... +++ ..++..++.+++.++.++| ..-..+.+.++|.+-
T Consensus 533 ~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~ 612 (876)
T 1qgr_A 533 MEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLL 612 (876)
T ss_dssp HHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99999774311899999999999999999988712488635999999999999999999998285420578999999999
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHC-HHHHH-HHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 52188999843052349999999984099-99777994676899999732-22499-99999889776151344231399
Q 001804 684 RGIDINSPDELNLLEDSMLLWEATISHAP-VMVPQLLAYFPCLVEIMERS-FDHLQ-VAINIIEGYIILGGTDFLNMHAS 760 (1011)
Q Consensus 684 ~~l~~~~~~~~~l~e~~l~L~~~l~~~~~-~~~~~l~~Lf~~l~~~~~~~-~~~l~-~~~~il~~yi~lg~~~~l~~~~~ 760 (1011)
..++..+. .....+.++.++..++...+ .+.|.+-.++|.+..++.+. ...++ ..+..+...+......+ ..+.+
T Consensus 613 ~~l~~~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~ 690 (876)
T 1qgr_A 613 RMFQSTAG-SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNI-IPFCD 690 (876)
T ss_dssp HHC------CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGG-HHHHH
T ss_pred HHHHHCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 99985368-88850899999999999987609999999999999987586508799999999999999887854-64599
Q ss_pred HHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999996327--550347639989999997379875367999999999998
Q 001804 761 CVAKLLDLVVGN--VNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVIC 811 (1011)
Q Consensus 761 ~l~~~~~~~l~~--~~~~~~~~~~~l~e~li~~~~~~~~~~i~~~l~~l~~~~ 811 (1011)
.+...+...+.+ .+.+....+...+..+....+....++++.+++.+...+
T Consensus 691 ~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~ 743 (876)
T 1qgr_A 691 EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS 743 (876)
T ss_dssp HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999748712338763999999999999703527999999999999998
No 8
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=1.00 E-value=1 Score=324.62 Aligned_cols=751 Identities=13% Similarity=0.148 Sum_probs=437.1
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98998999999998608994556899999997421979099999999832888989899999999850102443456688
Q 001804 4 SASDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDS 83 (1011)
Q Consensus 4 ~~~d~~~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~~ 83 (1011)
.|+|++.+.+++....+|+++.|++|+++|++++++|+++..+.+++.+.. +..+|+.|++.|||.|+++|..
T Consensus 11 ~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s~---~~~vR~faa~~Lk~~I~~~W~~---- 83 (1023)
T 4hat_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDNPDAWQKADQILQFST---NPQSKFIALSILDKLITRKWKL---- 83 (1023)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCTTGGGGHHHHHHHCC---CHHHHHHHHHHHHHHHHHHGGG----
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHC----
T ss_conf 899999999999998499959999999999998719548889999953899---8899999999999999761112----
Q ss_pred CCCCHHHHHHHHHHHHHHHHH----C-----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 899977999999999969852----3-----0999999999999998661898841569999998326887789589999
Q 001804 84 VGISNEEKVHLRQKLLTHLRE----E-----NNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMI 154 (1011)
Q Consensus 84 ~~i~~e~K~~Ir~~ll~~L~~----~-----~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~ 154 (1011)
+++++|..||+.+++.+.. + ++.++++++.+++.|++.|||..||++++.+++.++++. ......|..
T Consensus 84 --L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~-~~~~~~L~i 160 (1023)
T 4hat_C 84 --LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSV-NVCENNMIV 160 (1023)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCH-HHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCHHHHHHHHHHHCCCH-HHHHHHHHH
T ss_conf --99999999999999999986578522223199999999999999998573323289999999856997-789999999
Q ss_pred HHHHHHHHHC---CCCHHHH-HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 9999998500---5503667-79999999999999986588699---------898655676631046521002388999
Q 001804 155 LFRTLKELST---KRLTADQ-RNFAEISSHLFDYSWHLWQSDVQ---------TILHGFSTVAQAYNSNALEQDHDELYL 221 (1011)
Q Consensus 155 L~~v~k~~~~---~rl~~~~-~~~~~i~~~lf~~l~~~~~~~~~---------~ll~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1011)
|..+.++... .++...| ..+...+..-++.+.++|....+ ..+..+..+++--..+. ......+..
T Consensus 161 L~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~-i~~~~ll~~ 239 (1023)
T 4hat_C 161 LKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRY-IYETNILEL 239 (1023)
T ss_dssp HHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHH-HCCHHHHHH
T ss_conf 9999999987100001599988899999998999999999998278988999999999999998489987-514449999
Q ss_pred HH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCC----CCCCHHHHHHHHHH
Q ss_conf 67-------899999999999987257998402121011555318999999-7424685433----68980269999999
Q 001804 222 TC-------ERWLLCLKIIRQLIISGFPSDAKCIQEVRPVKEVSPLLLNAI-QSFLPYYSSF----QKGHPKFWEFTKRA 289 (1011)
Q Consensus 222 ~~-------~~~~~~lk~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~~----~~~~~~~~~~~~k~ 289 (1011)
.+ +..-.+++|+..++....+.+..... ..+..+++.++..+ +..+|..... ......-.++
T Consensus 240 l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~--~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~---- 313 (1023)
T 4hat_C 240 LSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIK--RQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSF---- 313 (1023)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHH--HHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHH----
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHH----
T ss_conf 99987698788999999999998042578557788--999999999999999973797412899986266311999----
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHH----HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999999999997308776444576642478----8885304988886305899999999999975024556788765446
Q 001804 290 CTKLMKVLVAIQGRHPYTFGDKCVLPSVVD----FCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSLTGRVMD 365 (1011)
Q Consensus 290 i~~~~k~~~~~~~~~p~~f~~~~~l~~~~~----~~~~~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~~~~~~~ 365 (1011)
+..+++.++.+.+.|...........+.+. ++..+... ++ ......++.|...+.. ..|.+..
T Consensus 314 ~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~--~d----~ei~~~tl~FW~~L~~-~l~~e~~------ 380 (1023)
T 4hat_C 314 LQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKI--EE----RELFKTTLDYWHNLVA-DLFYEPL------ 380 (1023)
T ss_dssp HHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTS--SC----HHHHHHHHHHHHHHHH-HHTTSTT------
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHHHHH-HHHHCHH------
T ss_conf 999999999999999999867910358999999999986189--92----8899999999999999-9985657------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCC-----CCCCCCCCCCC
Q ss_conf 8643389843446556655632279978999999999772026895359888309776663201-----21111023420
Q 001804 366 DSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQD-----MVQWTEKLRPC 440 (1011)
Q Consensus 366 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~DPee~~~~~~-----~~~~~~~~r~~ 440 (1011)
....+ ...+.+++..++.+ +...++++ .+++|..+|+++.. .+.|. +.|
T Consensus 381 --------------------~~~~~-~~~~~~L~~vli~k-m~~P~e~~-ive~d~~~~~~e~~~d~d~~~~f~-~~R-- 434 (1023)
T 4hat_C 381 --------------------KKHIY-EEICSQLRLVIIEN-MVRPEEVL-VVENDEGEIVREFVKESDTIQLYK-SER-- 434 (1023)
T ss_dssp --------------------TGGGG-HHHHHHHHHHHHHS-CCCCTTCC-EEECTTSCEEECSSCCGGGHHHHH-HHH--
T ss_pred --------------------HHHHH-HHHHHHHHHHHHHH-CCCCCCCC-CCCCCCCCHHHHHCCCHHHHHHHH-HHH--
T ss_conf --------------------88889-99999999999986-57982026-677888608887144558899999-999--
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHHH
Q ss_conf 99999999997120609999999999870288887788822698879999999525742378--9969999998568663
Q 001804 441 AEALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNY--LSFKDWFNGALSLDLS 518 (1011)
Q Consensus 441 a~~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~kea~l~alg~~a~~l~~~--~~~~~~l~~~l~~~l~ 518 (1011)
..+..+..-.++.+++.+++.+.+... ++..+|..+||++.|+|++++++.+. .++-..+.+.|+....
T Consensus 435 --d~L~~l~~l~~~~~~~~~~~~l~~~l~-------~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~ 505 (1023)
T 4hat_C 435 --EVLVYLTHLNVIDTEEIMISKLARQID-------GSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCV 505 (1023)
T ss_dssp --HHHHHHHHHCHHHHHHHHHHHHHHHHS-------STTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHCCCHHHHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf --999998606878999999999999854-------88788899989999999997689815578889999999997541
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-----CCCCCCCC
Q ss_conf 139--98516999999999851126--8810099999999940037893799999999998501028-----88321124
Q 001804 519 NDH--PNMHIIHRKVAIILGQWVSE--IKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDAN-----FSERDFTD 589 (1011)
Q Consensus 519 ~~~--~~~~~lR~ra~~~lg~~~~~--~~~~~~~~i~~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~-----f~~~~~~p 589 (1011)
... +....+|..+||++|||++- ..+++++++++.++..|.++++.|+.+||.|+..+++++. .......|
T Consensus 506 ~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p 585 (1023)
T 4hat_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEP 585 (1023)
T ss_dssp HCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 03467625999999999999999998616798999999999986169878999999999999999888761357777860
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHHHCC-------------CCCHHH
Q ss_conf 2279999999997675112259999999999999612-5--41308899999998772144-------------520599
Q 001804 590 LLPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-E--VIPYANKLVQFFQKVWEESS-------------GESLLQ 653 (1011)
Q Consensus 590 ~l~~il~~L~~ll~~~~~~e~~~~ll~~l~~ii~~~~-~--i~p~~~~l~~~L~~lw~~~~-------------~~~~l~ 653 (1011)
|++++++.+...+..++. +....++++++.++...+ + ...+...|++++.+.|++-. +.....
T Consensus 586 ~~~~il~~l~~~~~~l~~-~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l 664 (1023)
T 4hat_C 586 FIQTIIRDIQKTTADLQP-QQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKII 664 (1023)
T ss_dssp HHHHHHHTHHHHHTTSCH-HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHH
T ss_conf 699999999999884798-8899999999999985887744899999998858999999999872272541287889999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCC-C--CHHHHHHHHHHHHHHH
Q ss_conf 999999999999807787111463898998521889998430523499999999840999-9--7779946768999997
Q 001804 654 IQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISHAPV-M--VPQLLAYFPCLVEIME 730 (1011)
Q Consensus 654 ~~il~~l~~lv~a~~~~~~~~~~~~~pii~~~l~~~~~~~~~l~e~~l~L~~~l~~~~~~-~--~~~l~~Lf~~l~~~~~ 730 (1011)
..+++|++.++.++|. .|.+.+.+++..+++ ++...-...+..+...+. . .| ... ...+
T Consensus 665 ~~il~~~~~v~~~lg~---~f~~~~~~i~~~~l~--------~y~~~s~~i~~~~~~~g~~~~~~~-~~r----~~r~-- 726 (1023)
T 4hat_C 665 ANIIKTNVAVCTSMGA---DFYPQLGHIYYNMLQ--------LYRAVSSMISAQVAAEGLIATKTP-KVR----GLRT-- 726 (1023)
T ss_dssp HHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCGGGGGSH-HHH----HHHH--
T ss_pred HHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCHHHCCH-HHH----HHHH--
T ss_conf 9999999999998268---899999999999999--------999999999999984794253168-888----8899--
Q ss_pred HCHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 3222499999998897761513--4423139999-999999632755034763998999999737987536799999999
Q 001804 731 RSFDHLQVAINIIEGYIILGGT--DFLNMHASCV-AKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKL 807 (1011)
Q Consensus 731 ~~~~~l~~~~~il~~yi~lg~~--~~l~~~~~~l-~~~~~~~l~~~~~~~~~~~~~l~e~li~~~~~~~~~~i~~~l~~l 807 (1011)
.-+.++++++.|+...+. .+.....+.+ -.++..+..+..+.-...+..++.+++...+....+.+..++..+
T Consensus 727 ----ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~v 802 (1023)
T 4hat_C 727 ----IKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSV 802 (1023)
T ss_dssp ----HHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----9999999999999627988999998678899999988872872010388999999999988774101568999999
Q ss_pred H----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 9----99821998898605788999999999999868499999
Q 001804 808 I----VICLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQ 846 (1011)
Q Consensus 808 ~----~~~~~~~~~~~~~~~~~~~~~~~v~~rl~~~~p~~~~~ 846 (1011)
+ ..+ ++.-++.| ..+.+.+..+.|+.-.++..+++
T Consensus 803 f~~Tl~mi-~~~~~~~P---e~r~~ff~ll~~~~~~~f~~~~~ 841 (1023)
T 4hat_C 803 FECTLDMI-NKDFTEYP---EHRVEFYKLLKVINEKSFAAFLE 841 (1023)
T ss_dssp HHHHHHHH-SSCSSSSH---HHHHHHHHHHHHHHHHCTHHHHT
T ss_pred HHHHHHHH-HCCCCCCH---HHHHHHHHHHHHHHHHCHHHHHC
T ss_conf 99999998-55622294---98999999999999977699974
No 9
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=1.00 E-value=1 Score=310.85 Aligned_cols=769 Identities=11% Similarity=0.109 Sum_probs=430.8
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 98998999999998608994556899999997421979099999999832888989899999999850102443456688
Q 001804 4 SASDLPAIYTLLANSMSRDESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRRDS 83 (1011)
Q Consensus 4 ~~~d~~~l~~~L~~s~s~d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~~~ 83 (1011)
.++|++.+.+++....+||++.|++|+++|++++++|+++..+.+++.+.. +..+|+.|+..|||.|+++|..
T Consensus 23 ~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~---~~~vR~fAa~~L~~~I~~~W~~---- 95 (1073)
T 3gjx_A 23 QKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPDAWTRVDTILEFSQ---NMNTKYYGLQILENVIKTRWKI---- 95 (1073)
T ss_dssp CCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSCHHHHHTCC---CC---SHHHHHHHHHHHHHHHHHTGGG----
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC---CHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 789999999999998299999999999999998729058999999946899---8999999999999999764662----
Q ss_pred CCCCHHHHHHHHHHHHHHHHH---------CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 899977999999999969852---------30999999999999998661898841569999998326887789589999
Q 001804 84 VGISNEEKVHLRQKLLTHLRE---------ENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADVLTSHRIFMI 154 (1011)
Q Consensus 84 ~~i~~e~K~~Ir~~ll~~L~~---------~~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~~~~~~~~al~~ 154 (1011)
+++++|..||+.+++.+.. +++.++++++.+++.|++.|||+.||++++.+++.++++ +.....+|.+
T Consensus 96 --L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~~-~~~~~~~L~I 172 (1073)
T 3gjx_A 96 --LPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRTS-ESLCQNNMVI 172 (1073)
T ss_dssp --SCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHC-HHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHHHHHCCC-HHHHHHHHHH
T ss_conf --9999999999999999998726853233346899999999999999868331608999999983799-8899999999
Q ss_pred HHHHHHHHHCC---CCHHHH-HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 99999985005---503667-7999999999999998658869---------9898655676631046521002388999
Q 001804 155 LFRTLKELSTK---RLTADQ-RNFAEISSHLFDYSWHLWQSDV---------QTILHGFSTVAQAYNSNALEQDHDELYL 221 (1011)
Q Consensus 155 L~~v~k~~~~~---rl~~~~-~~~~~i~~~lf~~l~~~~~~~~---------~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 221 (1011)
|..+.++.... ++...| ..+.+.+..-++.+.++|.... ...++.+..++.=-..+. ......+..
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~-i~~~~ll~~ 251 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGY-IFETKLIST 251 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH-HCCCHHHHH
T ss_conf 9999999985143423088999999999999999999999875556887999999999999998658987-605428999
Q ss_pred HH-------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-------CCCCHHHHHHHH
Q ss_conf 67-------8999999999999872579984021210115553189999997424685433-------689802699999
Q 001804 222 TC-------ERWLLCLKIIRQLIISGFPSDAKCIQEVRPVKEVSPLLLNAIQSFLPYYSSF-------QKGHPKFWEFTK 287 (1011)
Q Consensus 222 ~~-------~~~~~~lk~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~~~~~~~~ 287 (1011)
.+ +..-.+++|+..++....+.+. ..+...++.++..+...++...+. ...+.+....+-
T Consensus 252 L~~~~L~~~~~r~aA~dcL~eIv~k~~~~~~------~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~ 325 (1073)
T 3gjx_A 252 LIYKFLNVPMFRNVSLKCLTEIAGVSVSQYE------EQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLS 325 (1073)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHSCSGGGH------HHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9998669867899999999999964152068------9999999999999988658820278887446551499999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC----CCCC
Q ss_conf 999999999999973087764445766424788885304988886305899999999999975024556788----7654
Q 001804 288 RACTKLMKVLVAIQGRHPYTFGDKCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCMVLVKSVLECKEYKPSL----TGRV 363 (1011)
Q Consensus 288 k~i~~~~k~~~~~~~~~p~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~ll~~~l~~~~y~~~~----~~~~ 363 (1011)
+.++.+.+.+..++++.|. +.. .+-..+++...+.... + ....--|+.|...+.. .-|++.. ...+
T Consensus 326 ~~f~~~~e~~~~lIe~~p~-~~~--~l~~~l~~ll~~s~~~--d----~ei~kitf~fW~~L~~-~L~~e~~~~~~~~~~ 395 (1073)
T 3gjx_A 326 LFLCTFLKEHGQLLEKRLN-LRE--ALMEALHYMLLVSEVE--E----TEIFKICLEYWNHLAA-ELYRESPFSTSASPL 395 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCGG-GHH--HHHHHHHHHHHHTTCS--C----HHHHHHHHHHHHHHHH-HHHHHCCSCCCCSSC
T ss_pred HHHHHHHHHHHHHHHCCCC-CHH--HHHHHHHHHHHHHCCC--C----HHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCC
T ss_conf 9999999999999835854-247--9999999999983899--1----9999999999999999-998614233344510
Q ss_pred CCCCC-CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCHH
Q ss_conf 46864-33898434465566556322799789999999997720268953598883097766632012111102342099
Q 001804 364 MDDSG-VTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEAFHHEQDMVQWTEKLRPCAE 442 (1011)
Q Consensus 364 ~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~DPee~~~~~~~~~~~~~~r~~a~ 442 (1011)
+..+. ..++.. +..| ...+..+...+|.+ |...+ |.-.-|+|.+|+.|+.-.|..+-+++.+..
T Consensus 396 ~~~~~~~~~~~~------------~~~y-~~i~~~L~~vlI~~-m~~P~-ev~i~e~e~ge~~re~~~d~~~~~ly~~mr 460 (1073)
T 3gjx_A 396 LSGSQHFDIPPR------------RQLY-LTVLSKVRLLMVSR-MAKPE-EVLVVENDQGEVVREFMKDTDSINLYKNMR 460 (1073)
T ss_dssp TTSSCCSCSCHH------------HHTT-HHHHHHHHHHHHHT-CCCSC-CEEEEECSSSCEEEEECSSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHH------------HHHH-HHHHHHHHHHHHHH-CCCCC-CCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
T ss_conf 022210010338------------9999-99999999999982-59994-235467651268999886132189999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH---HHHHHHC
Q ss_conf 9999999971206099999999998702888877888226988799999995257423789969999998---5686631
Q 001804 443 ALYIVLFENHSQLLGPVVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYELSNYLSFKDWFNGA---LSLDLSN 519 (1011)
Q Consensus 443 ~ll~~l~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~kea~l~alg~~a~~l~~~~~~~~~l~~~---l~~~l~~ 519 (1011)
..+..+.+-.++.....+++.+++..+ ++..+|...||++.|+|++|..+.+. .-+.++... |+.....
T Consensus 461 d~L~~lt~l~~~~~~~i~~~~l~~~~~-------~~~~sW~~lea~~~aigaIag~~~~~-~E~~~Lp~vi~~Ll~L~e~ 532 (1073)
T 3gjx_A 461 ETLVYLTHLDYVDTEIIMTKKLQNQVN-------GTEWSWKNLNTLCWAIGSISGAMHEE-DEKRFLVTVIKDLLGLCEQ 532 (1073)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHT-------SCCCCHHHHHHHHHHHHHTTTSSCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHCCCCC
T ss_conf 999987048889999999999999846-------78888788839999999987727862-1002299999998634144
Q ss_pred CCC--CCHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC--C---CCCCCCCC
Q ss_conf 399--8516999999999851126--8810099999999940037893799999999998501028--8---83211242
Q 001804 520 DHP--NMHIIHRKVAIILGQWVSE--IKDDTKRAVYCALIKLLMDKDLSVRLAACRSLCSHIEDAN--F---SERDFTDL 590 (1011)
Q Consensus 520 ~~~--~~~~lR~ra~~~lg~~~~~--~~~~~~~~i~~~ll~~L~d~d~~Vr~~A~~aL~~~i~~~~--f---~~~~~~p~ 590 (1011)
+++ +-+.++..+||++|||.+- -.++++.++++.++..+.+.++.|+.+||.|+..+++++. + ......||
T Consensus 533 ~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~ 612 (1073)
T 3gjx_A 533 KRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPF 612 (1073)
T ss_dssp SCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 44341269999999999950079998677999999999999984498789999999999999999898752355545359
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC--CCHHHHHHHHHHHHHHHCC-----------CCC--HHHH
Q ss_conf 279999999997675112259999999999999612-54--1308899999998772144-----------520--5999
Q 001804 591 LPICWDSCFKLVEEVQEFDSKVQVLNLISILIGHVS-EV--IPYANKLVQFFQKVWEESS-----------GES--LLQI 654 (1011)
Q Consensus 591 l~~il~~L~~ll~~~~~~e~~~~ll~~l~~ii~~~~-~i--~p~~~~l~~~L~~lw~~~~-----------~~~--~l~~ 654 (1011)
++++++.+......++. +....++++++.++.+.+ +. ..+...+|+++.+.|++.. |.. .-..
T Consensus 613 i~~il~~~~~~~~~l~~-~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~ 691 (1073)
T 3gjx_A 613 IDEILNNINTIICDLQP-QQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLG 691 (1073)
T ss_dssp HHHHHTSHHHHHTTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHH
T ss_conf 99999999999974699-99999999999999859972029999999988999999999998621714205838999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHCH
Q ss_conf 99999999999807787111463898998521889998430523499999999840-99997779946768999997322
Q 001804 655 QLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELNLLEDSMLLWEATISH-APVMVPQLLAYFPCLVEIMERSF 733 (1011)
Q Consensus 655 ~il~~l~~lv~a~~~~~~~~~~~~~pii~~~l~~~~~~~~~l~e~~l~L~~~l~~~-~~~~~~~l~~Lf~~l~~~~~~~~ 733 (1011)
.+++|.+.++.++|. .|.+.+.+++...++ ++.-.-+..+..+.. .+..+. . ....++.
T Consensus 692 ~il~~n~~v~~~~g~---~f~~~~~~i~~~~l~--------~y~~~s~~i~~~v~~~g~~~~~---~---~~~~~~r--- 751 (1073)
T 3gjx_A 692 SILKTNVRACKAVGH---PFVIQLGRIYLDMLN--------VYKCLSENISAAIQANGEMVTK---Q---PLIRSMR--- 751 (1073)
T ss_dssp HHHHHHHHHHHHHCG---GGHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCGGGGS---S---HHHHHHH---
T ss_pred HHHHHHHHHHHHCCH---HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCHHHC---C---HHHHHHH---
T ss_conf 999653998845652---579999999999999--------9999999999999827841122---5---9999989---
Q ss_pred HHHHHHHHHHHHHHHCCHHH--HHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 24999999988977615134--42313999-9999999632755034763998999999737987536799999999999
Q 001804 734 DHLQVAINIIEGYIILGGTD--FLNMHASC-VAKLLDLVVGNVNDKGLLIILPVIDMLIQCFPIQVPPLISCSLQKLIVI 810 (1011)
Q Consensus 734 ~~l~~~~~il~~yi~lg~~~--~l~~~~~~-l~~~~~~~l~~~~~~~~~~~~~l~e~li~~~~~~~~~~i~~~l~~l~~~ 810 (1011)
-.-+.++++++.|+..++.. +.....+. +-.++..+-.+..+.-...+..++.+++...+..+.+.+..++..++..
T Consensus 752 ~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~ 831 (1073)
T 3gjx_A 752 TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFEC 831 (1073)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999999999998147978999998678999999998853885313699999999999998865404489999999999
Q ss_pred ---HHCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf ---821998898605788999999999999868499999
Q 001804 811 ---CLSGGDDHEPSKTAVKASSAAILARILVMNANYLAQ 846 (1011)
Q Consensus 811 ---~~~~~~~~~~~~~~~~~~~~~v~~rl~~~~p~~~~~ 846 (1011)
++++.-++.| ..+.+.+..+.++.-.++..+++
T Consensus 832 Tl~mi~~~f~~~P---e~r~~ff~ll~~~~~~~f~~l~~ 867 (1073)
T 3gjx_A 832 TLNMINKDFEEYP---EHRTNFFLLLQAVNSHCFPAFLA 867 (1073)
T ss_dssp HHHHHSSCSSSCH---HHHHHHHHHHHHHHHHCGGGTTT
T ss_pred HHHHHHCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999867731296---88999999999999977699983
No 10
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=1.00 E-value=1 Score=306.55 Aligned_cols=762 Identities=14% Similarity=0.165 Sum_probs=422.9
Q ss_pred CCCCHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 989989999999986089--945568999999974219790999999998328889898999999998501024434566
Q 001804 4 SASDLPAIYTLLANSMSR--DESIRKPAEAALSQSESRPGFCSCLMEVITAKDLASQVDVRLMASVYFKNSINRYWRNRR 81 (1011)
Q Consensus 4 ~~~d~~~l~~~L~~s~s~--d~~~rk~Ae~~L~~~~~~pgf~~~L~~I~~~~~~~~~~~vR~~A~I~lKN~I~~~W~~~~ 81 (1011)
+|||++++.++++.+++| |++.|++|++.|+++++.|+++.....++.+.+. .+..+|+.|+..|||.|+ .
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~-~~~~vr~fa~~~L~~~I~----~-- 73 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTK-YKPSTRLICLQTLSEKVR----E-- 73 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTT-SCHHHHHHHHHHHHHHHH----H--
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHHH----H--
T ss_conf 999999999999998489999999999999999987394599999999837999-989999999999999987----5--
Q ss_pred CCCCCCHH----HHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH-HHHHHH
Q ss_conf 88899977----999999999969852-----30999999999999998661898841569999998326887-789589
Q 001804 82 DSVGISNE----EKVHLRQKLLTHLRE-----ENNQVAQMLAVLISKIARFDYPREWPQLFSVLAQQLQAADV-LTSHRI 151 (1011)
Q Consensus 82 ~~~~i~~e----~K~~Ir~~ll~~L~~-----~~~~ir~q~a~~i~~Iar~d~P~~WP~Ll~~L~~~l~s~~~-~~~~~a 151 (1011)
++++ +|..||+.++..+.. .++.||++++.+++.|+..+||..||++++.+++++++++. ......
T Consensus 74 ----l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~~~~~~~~ 149 (980)
T 3ibv_A 74 ----WNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQSEFSNFY 149 (980)
T ss_dssp ----CCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCCHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf ----8820108899999999999999705777867999999999999999868544753999999985689726899999
Q ss_pred HHHHHHHHHHHHCCCCHH-----HHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 999999999850055036-----677-9999999-999999986588699898655676631046521002388999678
Q 001804 152 FMILFRTLKELSTKRLTA-----DQR-NFAEISS-HLFDYSWHLWQSDVQTILHGFSTVAQAYNSNALEQDHDELYLTCE 224 (1011)
Q Consensus 152 l~~L~~v~k~~~~~rl~~-----~~~-~~~~i~~-~lf~~l~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (1011)
|.+|..+.+|....++.+ .|. .+.+.+. +-++.+...|. +++....++.+ ....
T Consensus 150 LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~-------~iL~~~~~~~~-------~~l~----- 210 (980)
T 3ibv_A 150 LKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVY-------EMMLAYSNAKN-------YGTV----- 210 (980)
T ss_dssp HHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH-------HHHHHHHHTTC-------HHHH-----
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHH-------HHHHHHHCCCC-------HHHH-----
T ss_conf 9999985899972323667887766599999998662889999999-------99998741288-------9999-----
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHC
Q ss_conf 99999999999987257998402121011555318999999-----------------------------------7424
Q 001804 225 RWLLCLKIIRQLIISGFPSDAKCIQEVRPVKEVSPLLLNAI-----------------------------------QSFL 269 (1011)
Q Consensus 225 ~~~~~lk~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----------------------------------~~~l 269 (1011)
-.+++|+.+.+... +. ..+ .. .++++.++..+ ...+
T Consensus 211 --~~~L~~l~s~i~wi-~~--~~i---~~-~~ll~~l~~~L~~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~ 281 (980)
T 3ibv_A 211 --GLCLQVYAQWVSWI-NI--NLI---VN-EPCMNLLYSFLQIEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFF 281 (980)
T ss_dssp --HHHHHHHHHHTTTS-CH--HHH---HC-HHHHHHHHHHTTSHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHC-CH--HHH---HC-CHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf --99999999998652-77--865---03-01899999982886779999999999997378956689999997579999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 68543368980269999999999999999997308776444------576642478888530498888630589999999
Q 001804 270 PYYSSFQKGHPKFWEFTKRACTKLMKVLVAIQGRHPYTFGD------KCVLPSVVDFCLNKITAPEPDIFSFEQFLIQCM 343 (1011)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~k~i~~~~k~~~~~~~~~p~~f~~------~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 343 (1011)
..... ++.+.+....+.|.+..+...++.. +..|....+ ...+...++++..+..+++ +......+
T Consensus 282 ~~l~~-~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~------deVs~~t~ 353 (980)
T 3ibv_A 282 SKSQE-QSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY------DETSTAVF 353 (980)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS------HHHHHTTH
T ss_pred HHHHC-CCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC------HHHHHHHH
T ss_conf 98744-5556899999999999999999987-3586555525566689999999999999967980------63999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHH
Q ss_conf 99999750245567887654468643389843446556655632279978999999999772026895359888309776
Q 001804 344 VLVKSVLECKEYKPSLTGRVMDDSGVTLEQMKKNISNVVGGVVSSLLPKERIILLCNVLIRRYFVLTASDLEEWYQNPEA 423 (1011)
Q Consensus 344 ~ll~~~l~~~~y~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~li~~~l~l~~~dle~we~DPee 423 (1011)
.|+..++....+.+... .. .... ...+..++..++.+ +.+.+++ .|++|.++
T Consensus 354 ~Fw~~~l~~~~~~~~~~-~~-------~~~~-----------------~~~l~~Ll~~li~k-~~yp~d~--~~~~~~d~ 405 (980)
T 3ibv_A 354 PFLSDLLVSLRKESSSK-EL-------SASL-----------------KEFLKSLLEAIIKK-MKYDESQ--EWDDDPDS 405 (980)
T ss_dssp HHHHHHHHHHHHHTTSC-CC-------CHHH-----------------HHHHHHHHHHHHHT-TSCCTTC--CCCCCSSS
T ss_pred HHHHHHHHHHHHCCCCC-CC-------CHHH-----------------HHHHHHHHHHHHHH-CCCCCCC--CCCCCCCH
T ss_conf 99999999987244223-43-------3789-----------------99999999999987-2289865--66666555
Q ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66320121111023420999999999971206099----99999999870288887788822698879999999525742
Q 001804 424 FHHEQDMVQWTEKLRPCAEALYIVLFENHSQLLGP----VVVSILQEAMNGCSTSVTEITPGLLLKDAAYGAAAYVYYEL 499 (1011)
Q Consensus 424 ~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~l~~----~l~~~l~~~~~~~~~~~~~~~~~~~~kea~l~alg~~a~~l 499 (1011)
+|.+.+. +.|.+...+++.+..-.++.+.+ .+.+.+++...+ ..+.+|+.+||+++++|++++++
T Consensus 406 ----ed~~~F~-e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~------~~~~~W~~~EaaL~~l~~iaE~i 474 (980)
T 3ibv_A 406 ----EEEAEFQ-EMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATL------SPENSWQLIEFALYETYIFGEGL 474 (980)
T ss_dssp ----STHHHHH-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHTTTTC
T ss_pred ----HHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC------CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf ----4799999-999999999999996484988888999999999987155------58998799999999999987653
Q ss_pred CCC-------CCHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHH--HCCCCCHHHH
Q ss_conf 378-------996999999856866313--9985169999999998511268--81009999999994--0037893799
Q 001804 500 SNY-------LSFKDWFNGALSLDLSND--HPNMHIIHRKVAIILGQWVSEI--KDDTKRAVYCALIK--LLMDKDLSVR 566 (1011)
Q Consensus 500 ~~~-------~~~~~~l~~~l~~~l~~~--~~~~~~lR~ra~~~lg~~~~~~--~~~~~~~i~~~ll~--~L~d~d~~Vr 566 (1011)
.+. .+.-+.+.+++...+.+. .+..|.+|..+||++|||++.+ .+++.+++++.++. .+.+++..||
T Consensus 475 ~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~ 554 (980)
T 3ibv_A 475 RGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVR 554 (980)
T ss_dssp CSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 43123667552106899999999984788889978999999999999999985193549999999826002669976599
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-H---HH----------------HHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999850102888321124227999999999767-5---11----------------2259999999999999612
Q 001804 567 LAACRSLCSHIEDANFSERDFTDLLPICWDSCFKLVEE-V---QE----------------FDSKVQVLNLISILIGHVS 626 (1011)
Q Consensus 567 ~~A~~aL~~~i~~~~f~~~~~~p~l~~il~~L~~ll~~-~---~~----------------~e~~~~ll~~l~~ii~~~~ 626 (1011)
.+||.++..|+++. ...+.||++++++.+-.++.. + +. -++...++++++.++...+
T Consensus 555 ~~a~~af~~f~~~~---~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 555 PRAWYLFYRFVKSI---KKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp HHHHHHHHHHHHHT---TTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999986---687445899999999986168678887532222104542036771478899999999992789
Q ss_pred ---C-CCCHHHHHHHHHHHHHHHCC-----C-CCHH-HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf ---5-41308899999998772144-----5-2059-9999999999999807787111463898998521889998430
Q 001804 627 ---E-VIPYANKLVQFFQKVWEESS-----G-ESLL-QIQLLIALRNFVVALGYQSHNCYSMLLPILRRGIDINSPDELN 695 (1011)
Q Consensus 627 ---~-i~p~~~~l~~~L~~lw~~~~-----~-~~~l-~~~il~~l~~lv~a~~~~~~~~~~~~~pii~~~l~~~~~~~~~ 695 (1011)
+ ...|...++++|.+.|+..- + +... ...++.+++++.......+ . .
T Consensus 632 ~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~----------------~-~----- 689 (980)
T 3ibv_A 632 LTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARG----------------S-E----- 689 (980)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC------------------C-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCC----------------C-C-----
T ss_conf 98789999999999999999999886413586388899999999999731678646----------------8-8-----
Q ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--CHHHHH-HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 523499999999840999977799467689999973--222499-99999889776-15134423139999999999632
Q 001804 696 LLEDSMLLWEATISHAPVMVPQLLAYFPCLVEIMER--SFDHLQ-VAINIIEGYII-LGGTDFLNMHASCVAKLLDLVVG 771 (1011)
Q Consensus 696 l~e~~l~L~~~l~~~~~~~~~~l~~Lf~~l~~~~~~--~~~~l~-~~~~il~~yi~-lg~~~~l~~~~~~l~~~~~~~l~ 771 (1011)
..| +.+.+++..+.+..+++. ....++ .+...+.-.+. +|+. ..+.+..++..++.
T Consensus 690 --------------~~p-~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-----~~p~lp~~i~~ll~ 749 (980)
T 3ibv_A 690 --------------EVA-WLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-----MLPKVPQLISILLN 749 (980)
T ss_dssp --------------CCS-HHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-----HTTTHHHHHHHHHH
T ss_pred --------------CCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHH
T ss_conf --------------881-8999999999999998826786789999999999999975576-----79878999999983
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHH----HHHHHHHHHHCCCCCCCC---HHHHHHHHHHHHHHHHHHHC-HHH
Q ss_conf 7550347639989999997379875367999----999999998219988986---05788999999999999868-499
Q 001804 772 NVNDKGLLIILPVIDMLIQCFPIQVPPLISC----SLQKLIVICLSGGDDHEP---SKTAVKASSAAILARILVMN-ANY 843 (1011)
Q Consensus 772 ~~~~~~~~~~~~l~e~li~~~~~~~~~~i~~----~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~v~~rl~~~~-p~~ 843 (1011)
.....+......++..++..++.+..+++.. ++++++..+ ..+..... ....++..|+..+..++-.+ +..
T Consensus 750 ~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if~~l-~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v 828 (980)
T 3ibv_A 750 SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIFSSL-SAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSI 828 (980)
T ss_dssp HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHT-TC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGG
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 69879999999999999999988899999988999999999971-68989947999999999999999999983786045
Q ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHCC-CCHHHHHHHHHH
Q ss_conf 9997004314577753189615989999999998729999951-469999998988516-945899989999
Q 001804 844 LAQLTSEPSLSLLLQQAGIPIEENMLLSLVDIWLDKVDHVSSV-QKKIFALALSIILTM-RLPQVLDKLDQI 913 (1011)
Q Consensus 844 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~-~rKl~~laL~~Ll~~-~~p~~l~~l~~~ 913 (1011)
|+. +++ ...++.++..-+..-..+++. -.|+++..|++++.. +.|.+++.|.++
T Consensus 829 ~~s-----------~~n-----~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f 884 (980)
T 3ibv_A 829 LFT-----------EEN-----QVYFDPLINSILHFANLVGEPATQKSSIALVSKMVSLWGGKDGIAGFENF 884 (980)
T ss_dssp GGS-----------HHH-----HTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHC-------CCHHHH
T ss_pred HCC-----------CCC-----HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 217-----------765-----67899999999998266787489989999999999997799862179999
Done!