BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001805
(1011 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 14 LPHWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEES 73
P +Y+VFLSFRG DTR+ FTD LY +L + I FRDD EL +G+ I P L +AI++S
Sbjct: 31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQS 90
Query: 74 KISIIVFSRNYACSTWCLDELVHILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFA 133
KI + + S YA S WCL EL I+ + ++ ++++ PIFY V+P+DVR Q+G + F
Sbjct: 91 KIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFR 150
Query: 134 RHEEILAQNKEKVQKWRDTLKEVANICGWEL 164
+H + + +Q W+D LK+V ++ GW +
Sbjct: 151 KHANKF--DGQTIQNWKDALKKVGDLKGWHI 179
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 137 bits (344), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
Query: 18 KYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISI 77
KYDVFLSFRG DTR NF LY L ++ I F+DDKELE G+ SP L IE S+ ++
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 78 IVFSRNYACSTWCLDELVHILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFARHEE 137
+V S NYA S+WCLDELV I++ + K V PIFY VEP VR Q+G+L F +H
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKG-SITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 138 ILAQNKEKVQKWRDTLKEVANICG 161
++ EKV KWR L A + G
Sbjct: 127 --REDPEKVLKWRQALTNFAQLSG 148
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 15 PHWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESK 74
PH D+F+S D + +F + L L G V+ DD L G+S+ + K + S+
Sbjct: 20 PH---DIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSR 75
Query: 75 ISIIVFSRNYACSTWCLDELVHILECKNKNHQQMVYPIFYDVEPTDV 121
I+V S ++ W EL + + ++ +++ PI++ V +V
Sbjct: 76 FGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRIL-PIWHKVSKDEV 121
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 18 KYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISI 77
++ F+S+ G D+ + L L+++G + ++ G+SI + IE+S SI
Sbjct: 12 QFHAFISYSGHDSFW-VKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYKSI 70
Query: 78 IVFSRNYACSTWCLDEL 94
V S N+ S WC EL
Sbjct: 71 FVLSPNFVQSEWCHYEL 87
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 36.2 bits (82), Expect = 0.096, Method: Composition-based stats.
Identities = 57/214 (26%), Positives = 83/214 (38%), Gaps = 24/214 (11%)
Query: 596 FPEIMTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKN-LLSLPCTINGXXXXX 654
FP+ + H+ ++ + LP + + F+GL L L +N L +LP +I
Sbjct: 96 FPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLNRLR 153
Query: 655 XXXXXXXXXXXNVPENLG------------KVESLEVLELSGCKGPPVSSSWYLPFPISL 702
+PE L ++SL LE +G + P S + L SL
Sbjct: 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR-LEWTGIRSLPASIA-NLQNLKSL 211
Query: 703 KRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNS-FVTA 761
K S +AL P++ L L +LDL C P G L+ L L S +T
Sbjct: 212 KIRNSPLSALG-PAIHHLPKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 762 PASINRLFNXXXXXXXDCKRLQSMP----QLPPN 791
P I+RL C L +P QLP N
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
Score = 33.5 bits (75), Expect = 0.54, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 523 NFPEIVGSMKCLSDLLLDGTDIKELPILPFEL--LSGLVQLNVEGCNKLERLPRNISAL 579
N+P I G L L+L D L LP ++ L+ L +L++ GC L RLP I+ L
Sbjct: 244 NYPPIFGGRAPLKRLIL--KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Query: 534 LSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKF 593
L L L+ T I+ LP L L L + + L L I L +L G
Sbjct: 185 LQSLRLEWTGIRSLPA-SIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTAL 242
Query: 594 SNFPEIMTNMEHVLELHLEGTA-IRGLPISIELFSGLVLLNLRDCKNLLSLPCTI 647
N+P I + L L+ + + LP+ I + L L+LR C NL LP I
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 64/160 (40%), Gaps = 39/160 (24%)
Query: 524 FPEIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPR--------- 574
P+ L L L ++ LP L+ L +L++ C +L LP
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 575 ------NISALKYHPTW---------NLSGL--LKFSNFP-----EIMTNMEHVLELHLE 612
N+ +L+ T NL L LK N P + ++ + EL L
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 613 G-TAIRGLPISIELFSG---LVLLNLRDCKNLLSLPCTIN 648
G TA+R P +F G L L L+DC NLL+LP I+
Sbjct: 238 GCTALRNYP---PIFGGRAPLKRLILKDCSNLLTLPLDIH 274
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 46 GIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTWCLDELV---HILECKN 102
I++ + + G+SIS + IE+S SI V S N+ + WC E H L +N
Sbjct: 64 SILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNLFHEN 123
Query: 103 KNHQQMVY--PIFYDVEPTDVRKQSGILE 129
+H ++ PI + PT K +LE
Sbjct: 124 SDHIILILLEPIPFYCIPTRYHKLKALLE 152
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 508 PEDPGKRSRLWKEADNFPEIVGSMKCLSDLLLDGTDIKELPILPFE-------------- 553
P P + +LW + + L +L++ G + LP+LP E
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSL 256
Query: 554 --LLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSG 589
L SGL+ L+V N+L RLP ++ L T NL G
Sbjct: 257 PMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEG 293
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 24/138 (17%)
Query: 723 LRKLDLSDCDLGE-GAIPNDIGNLWS--------------LEELYLSKNSFVTAPASINR 767
L++L +SD L A+P+++ LW+ L+EL +S N + P +
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSE 202
Query: 768 LFNXXXXXXXDCKRLQSMPQLPPNIKEVGVNG--CASLEKLSDALKLCKSENISISCIDN 825
L+ RL S+P LP +KE+ V+G SL L LK +S + + +
Sbjct: 203 LYKLWAYN----NRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELM---VSGNRLTS 255
Query: 826 LKLLSNDGLAFSMLKEYL 843
L +L + L+ S+ + L
Sbjct: 256 LPMLPSGLLSLSVYRNQL 273
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 717 LSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNS 757
LSG SLRKL++ DC G+ A+ + L ++ L++S S
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 332 SRDKHLLMTHGVD---EVYKLRELHD----DNALRLFCKKAFKTHQPKKGYEQLSEWVTK 384
S+D H G+ E Y L +L DNAL +FC + P + +W+ +
Sbjct: 40 SKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQE 99
Query: 385 YS---GGLPLALKVLGSFLYGKTTKEWQSAVKRLKRDSENEILDILQISFDG-LKE---T 437
G+ A+ LG+ Y + KRL++ I ++ DG L+E T
Sbjct: 100 TDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFIT 159
Query: 438 EKEIFLDIACFHRG 451
+E F C H G
Sbjct: 160 WREQFWPAVCEHFG 173
>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human
Cytochrome P450 Reductase At 1.93a Resolution
Length = 181
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 332 SRDKHLLMTHGVD---EVYKLRELHD----DNALRLFCKKAFKTHQPKKGYEQLSEWVTK 384
S+D H G+ E Y L +L DNAL +FC + P + +W+ +
Sbjct: 39 SKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQE 98
Query: 385 YS---GGLPLALKVLGSFLYGKTTKEWQSAVKRLKRDSENEILDILQISFDG-LKE---T 437
G+ A+ LG+ Y + KRL++ I ++ DG L+E T
Sbjct: 99 TDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFIT 158
Query: 438 EKEIFLDIACFHRG 451
+E F C H G
Sbjct: 159 WREQFWPAVCEHFG 172
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 11/88 (12%)
Query: 385 YSGGLPLALKVLGSFLYGKTTKEWQSAVKRLKRD-----SENEILDILQISFDGLKETEK 439
Y+ + A K+L + + + T++ ++AV+ L D ENE +D ++ +DG+++ K
Sbjct: 487 YTEKVLEATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRK 546
Query: 440 EIFLDIACFHRGENRDYVTKILDYCDFD 467
+ + I ++ D+ T+ DFD
Sbjct: 547 AVLM-IRTPEELDDSDFETE-----DFD 568
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 392 ALKVLGSFLYGKTTKEWQSAVKRLKRD-----SENEILDILQISFDGLKETEKEIFLDIA 446
A K+L + + + T++ ++AV+ L D ENE +D ++ +DG+++ K + L I
Sbjct: 193 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAV-LXIR 251
Query: 447 CFHRGENRDYVTKILD 462
++ D+ T+ D
Sbjct: 252 TPEELDDSDFETEDFD 267
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 332 SRDKHLLMTHGVD---EVYKLRELHD----DNALRLFCKKAFKTHQPKKGYEQLSEWVTK 384
S+D H G+ E Y L +L DNAL +FC + P + +W+ +
Sbjct: 40 SKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQE 99
Query: 385 YS---GGLPLALKVLGSFLYGKTTKEWQSAVKRLKRDSENEILDILQISFDG-LKE---T 437
G+ A+ LG+ Y + KRL++ I ++ DG L+E T
Sbjct: 100 TDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFIT 159
Query: 438 EKEIFLDIACFHRG 451
+E F C H G
Sbjct: 160 WREQFWLAVCEHFG 173
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 14/134 (10%)
Query: 332 SRDKHLLMTHGVD---EVYKLRELHD----DNALRLFCKKAFKTHQPKKGYEQLSEWVTK 384
S+D H G+ E Y L +L DNAL +FC + P + +W+ +
Sbjct: 40 SKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDPTDNAQDFYDWLQE 99
Query: 385 YS---GGLPLALKVLGSFLYGKTTKEWQSAVKRLKRDSENEILDILQISFDG-LKE---T 437
G+ A+ LG+ Y + KRL++ I ++ DG L+E T
Sbjct: 100 TDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFELGLGDDDGNLEEDFIT 159
Query: 438 EKEIFLDIACFHRG 451
+E F C H G
Sbjct: 160 WREQFWLAVCEHFG 173
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 19/158 (12%)
Query: 17 WKYDVFLSFRGVD---TRKNFTDHLYTAL-DQKGIIVFRDDKELERGESISPGLFKAIEE 72
+KYD +L F D + HL T DQ + ++++ GE+ + AI
Sbjct: 669 YKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWN 728
Query: 73 SKISIIVFSRNYACSTWCLDELVHIL-ECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAV 131
S+ + + SR++ WCL+ + C + + ++ + + + K I V
Sbjct: 729 SRKIVCLVSRHFLRDGWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQYQLMKHQSIRGFV 788
Query: 132 FARHEEILAQNKEKVQKWRDTLKEVANICGWELKDRNQ 169
K++ +W + ++V GW L +Q
Sbjct: 789 ----------QKQQYLRWPEDFQDV----GWFLHKLSQ 812
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 29.6 bits (65), Expect = 8.7, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 392 ALKVLGSFLYGKTTKEWQSAVKRLKRD-----SENEILDILQISFDGLKETEKEIF 442
A K+L + + + T++ ++AV+ L D ENE +D ++ +DG+++ K +
Sbjct: 199 ATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRKAVL 254
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 406 KEWQSAVKRLKR---DSENEILDILQISFDGLKETE-KEI--FLDIACFHRGEN 453
K+ +S K+L++ D N ILDI ++ F+G+K+T KEI D + RGEN
Sbjct: 383 KQGESFSKKLQKVMHDEHNIILDIPEMDFEGIKKTYLKEIDHVFDRSVKARGEN 436
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,882,724
Number of Sequences: 62578
Number of extensions: 1169599
Number of successful extensions: 2547
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 2514
Number of HSP's gapped (non-prelim): 52
length of query: 1011
length of database: 14,973,337
effective HSP length: 108
effective length of query: 903
effective length of database: 8,214,913
effective search space: 7418066439
effective search space used: 7418066439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)