Query 001805
Match_columns 1011
No_of_seqs 794 out of 5523
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:44:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-129 5E-134 1243.1 81.4 934 10-995 4-1100(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 3.5E-57 7.7E-62 547.4 27.7 458 195-661 161-652 (889)
3 PLN03194 putative disease resi 100.0 6.9E-42 1.5E-46 327.4 14.4 154 12-183 20-176 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 5E-36 1.1E-40 330.0 17.0 268 197-468 1-283 (287)
5 PLN00113 leucine-rich repeat r 99.9 7.2E-23 1.6E-27 263.4 18.1 259 525-786 86-349 (968)
6 PLN00113 leucine-rich repeat r 99.9 3.6E-22 7.9E-27 256.9 15.4 274 526-800 158-438 (968)
7 KOG0444 Cytoskeletal regulator 99.8 1.6E-22 3.4E-27 220.9 -0.8 257 525-786 119-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 2.9E-22 6.3E-27 218.8 -1.1 276 525-811 96-383 (1255)
9 PF01582 TIR: TIR domain; Int 99.8 6.2E-21 1.3E-25 184.8 2.5 134 21-154 1-140 (141)
10 PLN03210 Resistant to P. syrin 99.8 4E-19 8.8E-24 228.7 19.4 251 525-786 605-910 (1153)
11 smart00255 TIR Toll - interleu 99.8 4.8E-19 1E-23 172.1 12.1 137 18-157 1-138 (140)
12 KOG4194 Membrane glycoprotein 99.8 3.4E-20 7.5E-25 202.1 0.5 253 529-786 146-408 (873)
13 KOG0472 Leucine-rich repeat pr 99.8 3.9E-21 8.4E-26 201.0 -7.8 247 526-780 62-308 (565)
14 KOG0472 Leucine-rich repeat pr 99.7 8.4E-20 1.8E-24 191.1 -7.8 248 533-793 46-295 (565)
15 KOG4194 Membrane glycoprotein 99.7 3.1E-18 6.7E-23 187.1 3.7 256 525-782 166-429 (873)
16 KOG0618 Serine/threonine phosp 99.7 1.9E-18 4.1E-23 198.8 -6.0 168 605-776 242-437 (1081)
17 PRK15387 E3 ubiquitin-protein 99.6 1.6E-14 3.5E-19 172.8 17.4 132 533-687 223-354 (788)
18 PRK15370 E3 ubiquitin-protein 99.6 4.4E-15 9.6E-20 178.9 12.0 138 533-687 179-316 (754)
19 PRK15387 E3 ubiquitin-protein 99.6 2.6E-14 5.7E-19 171.0 15.8 221 530-785 240-461 (788)
20 PRK15370 E3 ubiquitin-protein 99.6 6.2E-15 1.3E-19 177.6 10.2 222 532-780 199-426 (754)
21 PF13676 TIR_2: TIR domain; PD 99.5 5.3E-15 1.2E-19 134.8 3.6 87 21-115 1-87 (102)
22 KOG0617 Ras suppressor protein 99.5 6.9E-16 1.5E-20 143.8 -2.4 175 601-805 30-205 (264)
23 PRK04841 transcriptional regul 99.5 2.2E-12 4.9E-17 165.5 25.4 296 187-506 9-335 (903)
24 KOG0618 Serine/threonine phosp 99.5 2.6E-15 5.6E-20 173.4 -2.3 262 531-802 218-488 (1081)
25 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.8E-20 142.0 -4.8 158 623-808 29-190 (264)
26 KOG4237 Extracellular matrix p 99.3 9.4E-14 2E-18 146.3 -2.6 253 535-789 70-342 (498)
27 PRK00411 cdc6 cell division co 99.2 7.9E-10 1.7E-14 127.4 23.2 285 188-484 26-358 (394)
28 cd00116 LRR_RI Leucine-rich re 99.2 1.8E-13 3.9E-18 153.2 -6.9 238 526-782 17-291 (319)
29 COG3899 Predicted ATPase [Gene 99.2 3.8E-10 8.1E-15 139.3 18.0 308 193-503 1-386 (849)
30 KOG0532 Leucine-rich repeat (L 99.2 2.3E-12 4.9E-17 141.9 -1.5 208 585-801 80-291 (722)
31 KOG4237 Extracellular matrix p 99.2 4.7E-13 1E-17 141.1 -6.6 255 524-780 83-357 (498)
32 TIGR02928 orc1/cdc6 family rep 99.2 4.8E-09 1E-13 119.6 25.4 287 188-485 11-351 (365)
33 TIGR00635 ruvB Holliday juncti 99.2 3E-10 6.5E-15 126.0 15.0 274 192-488 4-293 (305)
34 cd00116 LRR_RI Leucine-rich re 99.2 1.1E-12 2.3E-17 147.0 -5.0 230 553-801 20-289 (319)
35 PF01637 Arch_ATPase: Archaeal 99.2 3.3E-10 7.2E-15 120.5 14.3 197 194-395 1-233 (234)
36 PRK00080 ruvB Holliday junctio 99.1 2E-10 4.2E-15 128.2 12.1 261 188-487 21-313 (328)
37 KOG4658 Apoptotic ATPase [Sign 99.1 5.6E-11 1.2E-15 145.9 4.6 275 531-810 544-849 (889)
38 COG2909 MalT ATP-dependent tra 99.0 1.1E-08 2.5E-13 119.1 18.6 297 187-507 14-342 (894)
39 PF05729 NACHT: NACHT domain 99.0 4.1E-09 8.8E-14 105.5 11.9 141 216-365 1-163 (166)
40 TIGR03015 pepcterm_ATPase puta 99.0 4.8E-08 1E-12 106.3 20.5 179 215-400 43-242 (269)
41 KOG0532 Leucine-rich repeat (L 98.9 7.2E-11 1.6E-15 130.2 -2.7 208 585-801 55-271 (722)
42 KOG1259 Nischarin, modulator o 98.9 6.1E-10 1.3E-14 113.5 1.6 135 601-762 281-415 (490)
43 COG4886 Leucine-rich repeat (L 98.9 2.2E-09 4.7E-14 123.9 6.3 181 576-786 112-294 (394)
44 KOG3207 Beta-tubulin folding c 98.8 7.4E-10 1.6E-14 119.0 0.5 208 529-780 118-337 (505)
45 PTZ00112 origin recognition co 98.8 8.9E-08 1.9E-12 112.5 16.2 248 187-446 750-1030(1164)
46 PRK06893 DNA replication initi 98.8 1.6E-07 3.4E-12 98.9 16.4 150 215-396 39-203 (229)
47 COG3903 Predicted ATPase [Gene 98.8 6.7E-09 1.5E-13 112.4 5.9 279 214-503 13-314 (414)
48 KOG3207 Beta-tubulin folding c 98.7 1.4E-09 3E-14 116.9 -0.8 181 578-781 119-313 (505)
49 COG2256 MGS1 ATPase related to 98.7 1.4E-07 3.1E-12 101.4 12.5 168 192-390 24-206 (436)
50 COG4886 Leucine-rich repeat (L 98.7 2.3E-08 5E-13 115.3 6.5 174 532-734 116-290 (394)
51 PRK15386 type III secretion pr 98.6 1.4E-07 3E-12 104.4 9.6 158 603-803 51-213 (426)
52 PRK13342 recombination factor 98.6 3.3E-06 7.1E-11 97.3 21.0 176 190-396 10-196 (413)
53 TIGR03420 DnaA_homol_Hda DnaA 98.6 1.4E-06 3E-11 92.2 15.8 173 192-398 15-203 (226)
54 PRK12402 replication factor C 98.6 2.3E-06 5E-11 96.5 18.6 199 190-394 13-224 (337)
55 PTZ00202 tuzin; Provisional 98.5 8.3E-06 1.8E-10 89.6 19.7 161 186-363 256-432 (550)
56 PRK14961 DNA polymerase III su 98.5 8.2E-06 1.8E-10 92.3 20.6 182 189-392 13-216 (363)
57 KOG1259 Nischarin, modulator o 98.5 1.8E-08 3.8E-13 103.0 -1.1 127 649-780 282-410 (490)
58 PRK07003 DNA polymerase III su 98.5 1.1E-05 2.4E-10 95.1 21.4 194 189-396 13-221 (830)
59 PLN03025 replication factor C 98.5 1E-05 2.2E-10 90.1 19.7 182 188-391 9-195 (319)
60 PRK14963 DNA polymerase III su 98.4 2.5E-06 5.5E-11 99.4 15.3 194 189-393 11-214 (504)
61 PRK04195 replication factor C 98.4 7.6E-06 1.6E-10 96.3 19.4 179 189-394 11-200 (482)
62 PRK14960 DNA polymerase III su 98.4 1.8E-05 3.9E-10 92.5 21.2 178 189-392 12-215 (702)
63 PRK00440 rfc replication facto 98.4 3E-05 6.4E-10 86.7 22.0 181 190-392 15-199 (319)
64 PF13173 AAA_14: AAA domain 98.4 5.4E-07 1.2E-11 85.6 6.6 119 216-357 3-127 (128)
65 PRK07471 DNA polymerase III su 98.4 2.2E-05 4.7E-10 88.0 20.2 202 187-396 14-238 (365)
66 PRK14949 DNA polymerase III su 98.4 3.2E-05 7E-10 93.1 22.6 184 190-395 14-220 (944)
67 PRK08903 DnaA regulatory inact 98.4 5.3E-06 1.2E-10 87.6 14.5 173 191-400 17-203 (227)
68 PF05496 RuvB_N: Holliday junc 98.4 5.6E-06 1.2E-10 83.7 13.2 176 188-396 20-221 (233)
69 PF13191 AAA_16: AAA ATPase do 98.4 8.5E-07 1.8E-11 90.4 7.6 50 193-242 1-51 (185)
70 PRK08727 hypothetical protein; 98.4 1E-05 2.2E-10 85.4 16.0 167 191-391 18-199 (233)
71 PRK14962 DNA polymerase III su 98.4 4.9E-05 1.1E-09 88.0 22.8 184 189-398 11-221 (472)
72 KOG3678 SARM protein (with ste 98.4 1.3E-06 2.8E-11 94.1 8.9 91 16-113 610-708 (832)
73 TIGR01242 26Sp45 26S proteasom 98.3 2.7E-06 5.9E-11 96.4 12.1 173 191-390 121-328 (364)
74 TIGR02397 dnaX_nterm DNA polym 98.3 4.6E-05 9.9E-10 86.6 21.9 183 189-397 11-219 (355)
75 COG1474 CDC6 Cdc6-related prot 98.3 3.9E-05 8.5E-10 85.8 20.7 283 187-484 12-334 (366)
76 PRK12323 DNA polymerase III su 98.3 2.2E-05 4.9E-10 91.4 19.1 197 189-393 13-222 (700)
77 PRK14956 DNA polymerase III su 98.3 1.7E-05 3.6E-10 90.3 17.5 191 189-391 15-217 (484)
78 PF14580 LRR_9: Leucine-rich r 98.3 2E-07 4.4E-12 92.2 1.6 106 649-782 17-126 (175)
79 PF13401 AAA_22: AAA domain; P 98.3 2.2E-06 4.8E-11 81.9 8.8 114 214-334 3-125 (131)
80 PRK05642 DNA replication initi 98.3 2.1E-05 4.6E-10 83.0 16.6 149 216-396 46-208 (234)
81 PRK05564 DNA polymerase III su 98.3 6.6E-05 1.4E-09 83.3 21.3 176 192-394 4-188 (313)
82 cd00009 AAA The AAA+ (ATPases 98.3 7.2E-06 1.6E-10 79.8 12.2 123 195-336 1-131 (151)
83 PLN03150 hypothetical protein; 98.3 7.7E-07 1.7E-11 107.7 6.3 102 585-686 423-526 (623)
84 PRK13341 recombination factor 98.3 5.8E-05 1.3E-09 91.6 21.6 171 189-391 25-212 (725)
85 PLN03150 hypothetical protein; 98.2 8.3E-07 1.8E-11 107.4 5.4 82 606-687 420-502 (623)
86 PRK09087 hypothetical protein; 98.2 3.1E-05 6.6E-10 81.1 16.3 139 215-396 44-195 (226)
87 PRK08691 DNA polymerase III su 98.2 5E-05 1.1E-09 89.7 19.5 197 188-393 12-217 (709)
88 PRK14957 DNA polymerase III su 98.2 2.7E-05 5.9E-10 91.0 17.2 182 189-396 13-221 (546)
89 PF00308 Bac_DnaA: Bacterial d 98.2 5.5E-05 1.2E-09 78.9 17.6 180 192-394 8-206 (219)
90 PRK14964 DNA polymerase III su 98.2 0.00013 2.8E-09 84.2 22.0 177 189-391 10-212 (491)
91 KOG0531 Protein phosphatase 1, 98.2 1.8E-07 4E-12 108.1 -1.3 109 576-689 91-200 (414)
92 PRK08084 DNA replication initi 98.2 4E-05 8.7E-10 81.0 16.4 151 214-396 44-209 (235)
93 PRK06645 DNA polymerase III su 98.2 0.00014 3.1E-09 84.6 21.9 193 188-391 17-224 (507)
94 PRK15386 type III secretion pr 98.2 3.1E-06 6.8E-11 93.8 7.8 63 530-598 50-112 (426)
95 PF14580 LRR_9: Leucine-rich r 98.2 1E-06 2.3E-11 87.2 3.6 103 671-801 15-124 (175)
96 KOG2028 ATPase related to the 98.2 1.1E-05 2.5E-10 85.1 11.1 148 190-364 136-293 (554)
97 PRK09112 DNA polymerase III su 98.2 4.1E-05 8.9E-10 85.3 16.3 197 187-396 18-240 (351)
98 PRK14951 DNA polymerase III su 98.2 0.00019 4.1E-09 85.2 22.2 190 189-393 13-222 (618)
99 PRK07994 DNA polymerase III su 98.2 0.00011 2.3E-09 87.4 20.2 192 189-392 13-216 (647)
100 PRK07940 DNA polymerase III su 98.1 5.5E-05 1.2E-09 85.5 16.9 175 192-395 5-212 (394)
101 PRK14958 DNA polymerase III su 98.1 0.00011 2.4E-09 86.1 19.9 179 189-392 13-216 (509)
102 COG2255 RuvB Holliday junction 98.1 3.2E-05 6.9E-10 79.7 12.9 264 188-489 22-316 (332)
103 PRK05896 DNA polymerase III su 98.1 0.00012 2.7E-09 85.6 19.0 197 188-396 12-221 (605)
104 TIGR00678 holB DNA polymerase 98.1 9.1E-05 2E-09 75.7 16.1 88 296-391 95-186 (188)
105 PRK14955 DNA polymerase III su 98.1 0.00013 2.7E-09 83.7 18.6 198 189-393 13-225 (397)
106 KOG1909 Ran GTPase-activating 98.1 6.8E-08 1.5E-12 101.6 -7.4 64 717-780 237-309 (382)
107 PRK14970 DNA polymerase III su 98.1 0.00018 4E-09 81.9 19.7 180 189-392 14-205 (367)
108 PRK14087 dnaA chromosomal repl 98.1 0.00017 3.6E-09 83.5 19.4 165 215-398 141-321 (450)
109 PRK03992 proteasome-activating 98.1 3.3E-05 7.2E-10 88.0 13.0 172 191-389 130-336 (389)
110 PRK14952 DNA polymerase III su 98.1 0.00023 5.1E-09 84.1 20.2 196 189-396 10-220 (584)
111 PRK14969 DNA polymerase III su 98.0 0.00014 3E-09 85.9 18.3 186 190-396 14-221 (527)
112 PRK09111 DNA polymerase III su 98.0 0.00021 4.5E-09 85.1 19.6 196 189-394 21-231 (598)
113 PRK14959 DNA polymerase III su 98.0 0.00017 3.8E-09 84.9 18.6 195 190-400 14-225 (624)
114 PF14516 AAA_35: AAA-like doma 98.0 0.0014 3E-08 73.1 25.0 204 188-402 7-245 (331)
115 PRK07764 DNA polymerase III su 98.0 0.00037 8.1E-09 85.7 22.0 193 190-391 13-216 (824)
116 TIGR02881 spore_V_K stage V sp 98.0 6.6E-05 1.4E-09 81.0 13.0 154 192-366 6-192 (261)
117 PRK14950 DNA polymerase III su 98.0 0.00049 1.1E-08 82.8 21.7 195 190-396 14-221 (585)
118 KOG4341 F-box protein containi 98.0 3E-07 6.4E-12 98.9 -5.2 65 719-783 344-415 (483)
119 KOG2120 SCF ubiquitin ligase, 98.0 1.4E-07 3.1E-12 96.6 -7.3 59 744-802 311-375 (419)
120 PRK14954 DNA polymerase III su 98.0 0.00041 8.8E-09 82.7 20.1 195 190-391 14-223 (620)
121 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.4E-09 90.9 16.0 152 191-365 181-358 (731)
122 KOG0989 Replication factor C, 98.0 0.00011 2.4E-09 76.7 13.2 185 188-390 32-224 (346)
123 PRK14088 dnaA chromosomal repl 98.0 0.00027 5.8E-09 81.8 18.0 156 215-394 130-303 (440)
124 TIGR00362 DnaA chromosomal rep 98.0 0.00073 1.6E-08 78.0 21.6 179 194-395 113-309 (405)
125 PRK08451 DNA polymerase III su 97.9 0.0011 2.4E-08 77.4 22.7 184 189-394 11-216 (535)
126 KOG0531 Protein phosphatase 1, 97.9 1.3E-06 2.7E-11 101.2 -1.4 187 584-780 76-266 (414)
127 KOG1909 Ran GTPase-activating 97.9 5.8E-07 1.3E-11 94.7 -3.9 112 576-687 26-169 (382)
128 TIGR03345 VI_ClpV1 type VI sec 97.9 0.00013 2.9E-09 90.8 16.0 191 172-389 169-389 (852)
129 PRK07133 DNA polymerase III su 97.9 0.00067 1.5E-08 81.2 20.9 196 189-396 15-220 (725)
130 PF13855 LRR_8: Leucine rich r 97.9 9.5E-06 2.1E-10 65.8 3.8 58 721-780 1-60 (61)
131 PRK14953 DNA polymerase III su 97.9 0.0016 3.4E-08 76.1 23.5 191 190-396 14-220 (486)
132 PHA02544 44 clamp loader, smal 97.9 0.00012 2.7E-09 81.6 14.0 150 188-363 17-171 (316)
133 PF08937 DUF1863: MTH538 TIR-l 97.9 1.5E-05 3.2E-10 75.8 5.3 91 19-115 1-108 (130)
134 PRK00149 dnaA chromosomal repl 97.9 0.00061 1.3E-08 79.7 19.3 178 194-394 125-320 (450)
135 PRK06305 DNA polymerase III su 97.9 0.0003 6.4E-09 81.5 16.3 194 189-391 14-217 (451)
136 PRK06647 DNA polymerase III su 97.8 0.0013 2.9E-08 77.9 21.6 197 188-394 12-218 (563)
137 PRK14948 DNA polymerase III su 97.8 0.00071 1.5E-08 81.2 19.4 195 189-395 13-221 (620)
138 PRK06620 hypothetical protein; 97.8 0.0001 2.2E-09 76.4 10.6 132 216-392 45-185 (214)
139 CHL00095 clpC Clp protease ATP 97.8 0.0002 4.3E-09 89.7 15.0 169 172-364 161-353 (821)
140 TIGR03689 pup_AAA proteasome A 97.8 0.00016 3.4E-09 83.8 12.8 160 191-365 181-378 (512)
141 PRK14971 DNA polymerase III su 97.8 0.0022 4.8E-08 77.0 22.6 180 190-391 15-217 (614)
142 PRK12422 chromosomal replicati 97.8 0.0011 2.3E-08 76.7 18.9 152 216-390 142-307 (445)
143 PTZ00454 26S protease regulato 97.8 0.00033 7.2E-09 79.5 14.5 173 191-390 144-351 (398)
144 PRK14086 dnaA chromosomal repl 97.8 0.0024 5.2E-08 75.1 21.8 156 216-394 315-486 (617)
145 TIGR02903 spore_lon_C ATP-depe 97.8 0.00041 9E-09 83.5 15.9 205 188-399 150-398 (615)
146 PF13855 LRR_8: Leucine rich r 97.8 1.8E-05 4E-10 64.0 3.0 55 606-661 3-59 (61)
147 PRK05563 DNA polymerase III su 97.7 0.0027 5.9E-08 75.6 22.0 188 188-392 12-216 (559)
148 KOG4341 F-box protein containi 97.7 9.1E-07 2E-11 95.2 -6.6 253 533-806 139-417 (483)
149 PRK10865 protein disaggregatio 97.7 0.00064 1.4E-08 85.1 17.2 150 191-365 177-354 (857)
150 PTZ00361 26 proteosome regulat 97.7 0.00019 4.1E-09 81.9 11.4 153 192-367 183-369 (438)
151 KOG2120 SCF ubiquitin ligase, 97.7 6.9E-07 1.5E-11 91.8 -7.8 160 602-780 208-374 (419)
152 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00084 1.8E-08 84.4 17.5 152 191-365 172-349 (852)
153 PF05673 DUF815: Protein of un 97.7 0.0021 4.6E-08 66.3 16.9 53 189-242 24-79 (249)
154 PRK07952 DNA replication prote 97.6 0.0014 3.1E-08 68.9 15.8 35 215-249 99-133 (244)
155 cd01128 rho_factor Transcripti 97.6 3.6E-05 7.9E-10 81.3 3.7 95 214-310 15-116 (249)
156 KOG1859 Leucine-rich repeat pr 97.6 1.4E-06 3E-11 99.5 -7.4 127 605-758 165-291 (1096)
157 PRK07399 DNA polymerase III su 97.6 0.0017 3.7E-08 71.5 16.5 193 192-396 4-221 (314)
158 CHL00176 ftsH cell division pr 97.6 0.0011 2.4E-08 79.6 16.0 172 191-388 182-386 (638)
159 PRK09376 rho transcription ter 97.6 8.1E-05 1.8E-09 81.9 5.7 94 215-310 169-269 (416)
160 PF12799 LRR_4: Leucine Rich r 97.6 6.6E-05 1.4E-09 55.8 3.5 42 746-788 1-42 (44)
161 CHL00181 cbbX CbbX; Provisiona 97.6 0.0018 4E-08 70.4 16.1 131 216-367 60-211 (287)
162 PRK11034 clpA ATP-dependent Cl 97.6 0.00094 2E-08 81.7 15.2 152 192-365 186-362 (758)
163 PRK05707 DNA polymerase III su 97.6 0.0019 4E-08 71.6 16.2 93 298-396 107-203 (328)
164 PRK12377 putative replication 97.6 0.0022 4.8E-08 67.8 15.9 36 215-250 101-136 (248)
165 PRK14965 DNA polymerase III su 97.6 0.0036 7.7E-08 75.0 19.7 199 189-396 13-221 (576)
166 COG3267 ExeA Type II secretory 97.6 0.0037 8E-08 64.2 16.7 197 194-398 30-247 (269)
167 KOG0991 Replication factor C, 97.6 0.0012 2.7E-08 65.9 12.9 48 190-239 25-72 (333)
168 KOG2982 Uncharacterized conser 97.6 3.1E-05 6.8E-10 79.8 1.8 85 720-806 198-284 (418)
169 TIGR02880 cbbX_cfxQ probable R 97.5 0.00075 1.6E-08 73.4 12.4 128 217-365 60-208 (284)
170 PF10443 RNA12: RNA12 protein; 97.5 0.019 4.1E-07 64.1 22.8 179 297-485 148-370 (431)
171 TIGR01241 FtsH_fam ATP-depende 97.5 0.0013 2.9E-08 77.8 15.0 175 190-390 53-260 (495)
172 COG1222 RPT1 ATP-dependent 26S 97.5 0.0011 2.4E-08 71.0 12.0 167 193-390 152-357 (406)
173 KOG1859 Leucine-rich repeat pr 97.5 2E-06 4.2E-11 98.2 -9.0 114 662-780 174-290 (1096)
174 PRK08116 hypothetical protein; 97.5 0.00073 1.6E-08 72.7 10.8 102 216-335 115-221 (268)
175 COG0542 clpA ATP-binding subun 97.4 0.0014 2.9E-08 78.6 13.9 120 191-321 490-619 (786)
176 KOG2543 Origin recognition com 97.4 0.00018 3.9E-09 77.3 5.1 168 190-364 4-192 (438)
177 COG0593 DnaA ATPase involved i 97.4 0.012 2.7E-07 65.9 19.7 134 214-367 112-259 (408)
178 PF00004 AAA: ATPase family as 97.4 0.00096 2.1E-08 63.5 9.3 23 218-240 1-23 (132)
179 COG1373 Predicted ATPase (AAA+ 97.3 0.0023 4.9E-08 73.0 13.3 162 199-395 24-191 (398)
180 TIGR00767 rho transcription te 97.3 0.00028 6E-09 78.2 5.0 94 215-310 168-268 (415)
181 PF05621 TniB: Bacterial TniB 97.3 0.0055 1.2E-07 65.4 14.4 198 192-394 34-259 (302)
182 TIGR00602 rad24 checkpoint pro 97.3 0.0017 3.7E-08 77.4 11.8 53 188-240 80-135 (637)
183 PF08357 SEFIR: SEFIR domain; 97.3 0.00032 6.9E-09 68.7 4.9 65 20-84 2-70 (150)
184 KOG3665 ZYG-1-like serine/thre 97.2 7.2E-05 1.6E-09 90.4 0.2 107 579-687 147-262 (699)
185 PRK10536 hypothetical protein; 97.2 0.0028 6.1E-08 66.3 11.5 138 192-336 55-214 (262)
186 PF12799 LRR_4: Leucine Rich r 97.2 0.00029 6.3E-09 52.4 2.8 41 721-763 1-41 (44)
187 PRK08769 DNA polymerase III su 97.2 0.011 2.4E-07 64.9 16.3 93 296-396 112-208 (319)
188 smart00382 AAA ATPases associa 97.2 0.0008 1.7E-08 64.6 6.8 34 216-249 3-36 (148)
189 KOG2227 Pre-initiation complex 97.1 0.0098 2.1E-07 66.1 15.2 171 190-365 148-338 (529)
190 TIGR01243 CDC48 AAA family ATP 97.1 0.0049 1.1E-07 76.7 14.4 174 191-390 177-381 (733)
191 KOG0733 Nuclear AAA ATPase (VC 97.1 0.01 2.3E-07 67.7 15.1 154 191-367 189-376 (802)
192 PRK08058 DNA polymerase III su 97.1 0.016 3.5E-07 64.6 16.4 158 193-363 6-180 (329)
193 PRK08181 transposase; Validate 97.0 0.0022 4.8E-08 68.6 8.9 35 216-250 107-141 (269)
194 PRK06090 DNA polymerase III su 97.0 0.016 3.5E-07 63.5 15.5 91 296-396 107-201 (319)
195 TIGR01243 CDC48 AAA family ATP 97.0 0.006 1.3E-07 75.9 13.8 172 192-390 453-657 (733)
196 PRK06921 hypothetical protein; 97.0 0.0016 3.5E-08 69.9 7.6 36 215-250 117-153 (266)
197 PRK09183 transposase/IS protei 97.0 0.0027 5.8E-08 68.0 9.0 34 216-249 103-136 (259)
198 CHL00195 ycf46 Ycf46; Provisio 97.0 0.009 2E-07 69.5 13.9 154 191-367 227-407 (489)
199 KOG0731 AAA+-type ATPase conta 97.0 0.021 4.7E-07 68.2 16.8 178 190-392 309-520 (774)
200 PLN00020 ribulose bisphosphate 96.9 0.029 6.2E-07 61.5 16.1 30 213-242 146-175 (413)
201 PRK11331 5-methylcytosine-spec 96.9 0.0033 7.1E-08 71.1 9.3 56 191-250 174-231 (459)
202 KOG4579 Leucine-rich repeat (L 96.9 5.7E-05 1.2E-09 69.3 -3.8 80 606-687 55-135 (177)
203 PRK06871 DNA polymerase III su 96.9 0.021 4.6E-07 62.8 15.4 168 201-392 11-199 (325)
204 TIGR00763 lon ATP-dependent pr 96.9 0.04 8.6E-07 68.9 19.7 52 192-243 320-375 (775)
205 COG0466 Lon ATP-dependent Lon 96.9 0.035 7.7E-07 65.1 17.4 159 191-365 322-508 (782)
206 PRK06526 transposase; Provisio 96.9 0.0022 4.7E-08 68.3 7.1 28 215-242 98-125 (254)
207 KOG2982 Uncharacterized conser 96.9 0.00028 6.1E-09 73.1 0.2 43 717-759 220-262 (418)
208 TIGR03346 chaperone_ClpB ATP-d 96.8 0.051 1.1E-06 68.6 20.2 52 191-242 564-622 (852)
209 PRK07993 DNA polymerase III su 96.8 0.02 4.4E-07 63.6 14.6 175 201-393 11-201 (334)
210 KOG0744 AAA+-type ATPase [Post 96.8 0.0064 1.4E-07 64.1 9.8 36 215-250 177-216 (423)
211 KOG3665 ZYG-1-like serine/thre 96.8 0.00028 6E-09 85.5 -0.2 129 650-778 147-284 (699)
212 PRK06835 DNA replication prote 96.8 0.0019 4E-08 71.4 6.0 35 216-250 184-218 (329)
213 TIGR02640 gas_vesic_GvpN gas v 96.8 0.034 7.3E-07 59.9 15.6 27 216-242 22-48 (262)
214 PF02562 PhoH: PhoH-like prote 96.8 0.005 1.1E-07 62.7 8.4 128 196-336 4-157 (205)
215 KOG0730 AAA+-type ATPase [Post 96.8 0.029 6.4E-07 65.0 15.3 151 194-367 436-617 (693)
216 PRK09361 radB DNA repair and r 96.7 0.0038 8.3E-08 65.7 7.7 49 202-250 10-58 (225)
217 TIGR03345 VI_ClpV1 type VI sec 96.7 0.014 3E-07 73.1 13.7 51 191-241 565-622 (852)
218 TIGR02639 ClpA ATP-dependent C 96.7 0.055 1.2E-06 67.3 18.8 50 191-240 453-509 (731)
219 PRK10787 DNA-binding ATP-depen 96.7 0.047 1E-06 67.7 18.0 53 191-243 321-377 (784)
220 PRK00771 signal recognition pa 96.7 0.025 5.5E-07 64.8 14.4 29 214-242 94-122 (437)
221 COG2812 DnaX DNA polymerase II 96.7 0.074 1.6E-06 61.6 17.8 183 190-390 14-214 (515)
222 PRK10865 protein disaggregatio 96.6 0.021 4.5E-07 71.8 14.5 51 191-241 567-624 (857)
223 PF01695 IstB_IS21: IstB-like 96.6 0.0023 5E-08 64.3 5.0 35 216-250 48-82 (178)
224 cd01120 RecA-like_NTPases RecA 96.6 0.0048 1E-07 61.1 7.2 34 217-250 1-34 (165)
225 COG0470 HolB ATPase involved i 96.5 0.018 3.9E-07 64.4 12.1 144 193-357 2-173 (325)
226 PRK06964 DNA polymerase III su 96.5 0.083 1.8E-06 58.6 16.7 90 296-395 131-224 (342)
227 KOG0735 AAA+-type ATPase [Post 96.5 0.035 7.6E-07 64.6 13.8 151 215-389 431-608 (952)
228 PRK04132 replication factor C 96.5 0.062 1.3E-06 66.2 16.9 149 223-393 574-728 (846)
229 KOG0741 AAA+-type ATPase [Post 96.5 0.032 7E-07 62.7 12.9 128 213-364 536-685 (744)
230 PRK08118 topology modulation p 96.5 0.002 4.4E-08 64.1 3.3 32 217-248 3-37 (167)
231 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0038 8.1E-08 68.7 5.4 48 193-240 52-103 (361)
232 PF04665 Pox_A32: Poxvirus A32 96.4 0.0033 7.2E-08 65.4 4.6 34 217-250 15-48 (241)
233 PF13207 AAA_17: AAA domain; P 96.4 0.0027 5.8E-08 59.5 3.6 23 217-239 1-23 (121)
234 CHL00095 clpC Clp protease ATP 96.4 0.04 8.7E-07 69.3 15.1 119 191-320 508-636 (821)
235 cd01131 PilT Pilus retraction 96.4 0.0078 1.7E-07 61.8 7.1 110 216-338 2-112 (198)
236 COG2607 Predicted ATPase (AAA+ 96.4 0.033 7.3E-07 56.6 11.1 56 189-245 57-115 (287)
237 PF13177 DNA_pol3_delta2: DNA 96.4 0.033 7.2E-07 55.1 11.2 137 196-352 1-161 (162)
238 cd01393 recA_like RecA is a b 96.4 0.012 2.5E-07 62.1 8.4 49 202-250 6-60 (226)
239 cd01133 F1-ATPase_beta F1 ATP 96.3 0.0074 1.6E-07 64.2 6.7 39 215-253 69-107 (274)
240 PRK05541 adenylylsulfate kinas 96.3 0.023 4.9E-07 57.3 9.9 37 214-250 6-42 (176)
241 cd01394 radB RadB. The archaea 96.3 0.0064 1.4E-07 63.7 6.1 50 201-250 5-54 (218)
242 PRK08699 DNA polymerase III su 96.3 0.098 2.1E-06 57.9 15.5 86 298-393 114-203 (325)
243 PRK10733 hflB ATP-dependent me 96.3 0.06 1.3E-06 65.7 15.0 153 192-367 152-337 (644)
244 PF07693 KAP_NTPase: KAP famil 96.3 0.12 2.7E-06 57.7 16.7 45 198-242 2-47 (325)
245 COG5238 RNA1 Ran GTPase-activa 96.3 0.00039 8.4E-09 71.1 -3.2 35 578-612 28-66 (388)
246 KOG0652 26S proteasome regulat 96.3 0.059 1.3E-06 55.1 12.2 163 193-382 172-373 (424)
247 TIGR02237 recomb_radB DNA repa 96.3 0.0076 1.7E-07 62.6 6.3 44 207-250 4-47 (209)
248 PRK11034 clpA ATP-dependent Cl 96.2 0.037 7.9E-07 68.1 12.9 49 192-240 458-513 (758)
249 PRK04296 thymidine kinase; Pro 96.2 0.0057 1.2E-07 62.4 5.1 112 216-337 3-118 (190)
250 PF14532 Sigma54_activ_2: Sigm 96.2 0.0064 1.4E-07 58.5 5.2 45 195-239 1-45 (138)
251 KOG1644 U2-associated snRNP A' 96.2 0.0067 1.4E-07 59.9 5.2 62 717-780 60-124 (233)
252 PF00158 Sigma54_activat: Sigm 96.2 0.023 5E-07 56.4 9.2 44 194-237 1-44 (168)
253 PRK12608 transcription termina 96.2 0.014 3E-07 64.6 8.3 104 204-310 123-233 (380)
254 COG1618 Predicted nucleotide k 96.2 0.0047 1E-07 58.8 3.8 34 216-249 6-40 (179)
255 COG1484 DnaC DNA replication p 96.2 0.011 2.4E-07 63.0 7.1 36 214-249 104-139 (254)
256 COG0542 clpA ATP-binding subun 96.2 0.046 1E-06 65.9 12.8 150 192-365 170-346 (786)
257 PHA00729 NTP-binding motif con 96.2 0.022 4.7E-07 58.7 8.7 27 214-240 16-42 (226)
258 PRK06696 uridine kinase; Valid 96.1 0.0066 1.4E-07 63.8 5.2 45 197-241 3-48 (223)
259 PRK08939 primosomal protein Dn 96.1 0.03 6.4E-07 61.5 10.4 36 215-250 156-191 (306)
260 cd01121 Sms Sms (bacterial rad 96.1 0.022 4.7E-07 64.2 9.2 50 201-250 68-117 (372)
261 PF07728 AAA_5: AAA domain (dy 96.1 0.0057 1.2E-07 58.9 4.0 22 218-239 2-23 (139)
262 PRK06762 hypothetical protein; 96.1 0.022 4.9E-07 56.7 8.4 25 215-239 2-26 (166)
263 KOG4579 Leucine-rich repeat (L 96.1 0.0011 2.3E-08 61.2 -1.1 78 558-637 55-133 (177)
264 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.012 2.5E-07 57.4 5.8 33 216-248 3-35 (159)
265 PRK11889 flhF flagellar biosyn 96.0 0.044 9.6E-07 60.9 10.9 29 214-242 240-268 (436)
266 TIGR02902 spore_lonB ATP-depen 96.0 0.059 1.3E-06 64.1 12.9 48 190-239 63-110 (531)
267 KOG0733 Nuclear AAA ATPase (VC 96.0 0.055 1.2E-06 62.0 11.7 150 215-389 545-717 (802)
268 PRK07261 topology modulation p 96.0 0.023 5E-07 56.8 8.2 23 217-239 2-24 (171)
269 PF00448 SRP54: SRP54-type pro 96.0 0.011 2.4E-07 60.4 5.9 35 215-249 1-35 (196)
270 PRK07667 uridine kinase; Provi 96.0 0.013 2.8E-07 60.0 6.4 42 201-242 3-44 (193)
271 PRK06067 flagellar accessory p 96.0 0.025 5.5E-07 59.9 8.8 50 201-250 11-60 (234)
272 COG1066 Sms Predicted ATP-depe 96.0 0.032 6.8E-07 61.4 9.2 99 200-307 78-178 (456)
273 KOG2228 Origin recognition com 95.9 0.036 7.8E-07 59.1 9.3 172 192-365 24-219 (408)
274 KOG1514 Origin recognition com 95.9 0.13 2.9E-06 60.2 14.5 199 190-397 394-622 (767)
275 COG1223 Predicted ATPase (AAA+ 95.9 0.073 1.6E-06 54.7 10.9 168 192-389 121-318 (368)
276 cd01129 PulE-GspE PulE/GspE Th 95.9 0.029 6.3E-07 60.3 8.7 101 201-317 69-169 (264)
277 PRK14974 cell division protein 95.9 0.15 3.3E-06 56.4 14.4 29 214-242 139-167 (336)
278 cd00544 CobU Adenosylcobinamid 95.9 0.12 2.6E-06 51.3 12.5 79 218-306 2-82 (169)
279 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.016 3.5E-07 61.4 6.7 48 203-250 7-60 (235)
280 KOG1947 Leucine rich repeat pr 95.9 0.0008 1.7E-08 79.9 -3.8 39 626-664 268-308 (482)
281 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.033 7.1E-07 59.1 8.9 50 201-250 7-56 (237)
282 TIGR01817 nifA Nif-specific re 95.8 0.18 4E-06 60.4 16.0 50 190-239 194-243 (534)
283 PF03215 Rad17: Rad17 cell cyc 95.8 0.066 1.4E-06 62.9 11.7 56 192-249 19-77 (519)
284 KOG0734 AAA+-type ATPase conta 95.8 0.056 1.2E-06 61.0 10.3 48 192-239 304-361 (752)
285 TIGR02974 phageshock_pspF psp 95.8 0.1 2.2E-06 58.2 12.6 45 194-238 1-45 (329)
286 PRK05800 cobU adenosylcobinami 95.8 0.092 2E-06 52.3 11.1 80 217-306 3-85 (170)
287 KOG0727 26S proteasome regulat 95.7 0.1 2.2E-06 53.2 10.9 51 193-243 156-217 (408)
288 TIGR00064 ftsY signal recognit 95.7 0.087 1.9E-06 56.9 11.4 37 213-249 70-106 (272)
289 KOG0728 26S proteasome regulat 95.7 0.22 4.8E-06 50.7 13.2 147 192-365 146-331 (404)
290 TIGR00959 ffh signal recogniti 95.6 0.15 3.2E-06 58.5 13.5 27 214-240 98-124 (428)
291 KOG1644 U2-associated snRNP A' 95.6 0.015 3.2E-07 57.6 4.6 14 671-684 136-149 (233)
292 TIGR02012 tigrfam_recA protein 95.6 0.023 4.9E-07 62.3 6.5 50 201-250 40-90 (321)
293 TIGR02858 spore_III_AA stage I 95.6 0.032 6.9E-07 59.9 7.6 115 214-337 110-231 (270)
294 TIGR01425 SRP54_euk signal rec 95.6 0.23 5.1E-06 56.5 14.8 29 214-242 99-127 (429)
295 PF01583 APS_kinase: Adenylyls 95.6 0.016 3.5E-07 56.2 4.8 36 215-250 2-37 (156)
296 cd03228 ABCC_MRP_Like The MRP 95.5 0.034 7.3E-07 55.7 7.2 126 215-349 28-167 (171)
297 cd00983 recA RecA is a bacter 95.5 0.026 5.6E-07 61.8 6.7 50 201-250 40-90 (325)
298 PF13671 AAA_33: AAA domain; P 95.5 0.045 9.8E-07 52.8 7.9 24 217-240 1-24 (143)
299 COG0464 SpoVK ATPases of the A 95.5 0.053 1.2E-06 64.4 10.1 153 192-367 242-425 (494)
300 PRK10867 signal recognition pa 95.5 0.2 4.4E-06 57.4 14.1 29 214-242 99-127 (433)
301 PRK15455 PrkA family serine pr 95.5 0.015 3.3E-07 67.3 4.9 51 191-241 75-129 (644)
302 PRK12723 flagellar biosynthesi 95.5 0.083 1.8E-06 59.7 10.7 27 214-240 173-199 (388)
303 PRK11608 pspF phage shock prot 95.5 0.23 5.1E-06 55.3 14.2 46 192-237 6-51 (326)
304 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.029 6.2E-07 54.4 6.1 112 215-349 26-140 (144)
305 PRK10416 signal recognition pa 95.4 0.088 1.9E-06 58.1 10.5 29 214-242 113-141 (318)
306 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.7E-07 55.5 3.4 22 218-239 1-22 (129)
307 COG0488 Uup ATPase components 95.4 0.26 5.6E-06 58.1 14.8 57 289-351 449-511 (530)
308 PF13604 AAA_30: AAA domain; P 95.4 0.11 2.3E-06 53.3 10.3 39 201-242 7-45 (196)
309 PF07726 AAA_3: ATPase family 95.4 0.01 2.2E-07 54.9 2.4 31 218-248 2-32 (131)
310 cd03223 ABCD_peroxisomal_ALDP 95.3 0.032 7E-07 55.5 6.2 127 215-350 27-161 (166)
311 PRK09354 recA recombinase A; P 95.3 0.033 7.2E-07 61.5 6.7 50 201-250 45-95 (349)
312 cd03214 ABC_Iron-Siderophores_ 95.3 0.056 1.2E-06 54.6 8.0 120 215-338 25-161 (180)
313 cd01858 NGP_1 NGP-1. Autoanti 95.3 0.15 3.3E-06 50.2 10.8 122 66-237 2-124 (157)
314 KOG0736 Peroxisome assembly fa 95.3 0.34 7.4E-06 57.4 14.9 197 185-414 664-898 (953)
315 PRK11823 DNA repair protein Ra 95.3 0.062 1.3E-06 62.4 9.1 51 200-250 65-115 (446)
316 cd01130 VirB11-like_ATPase Typ 95.2 0.018 4E-07 58.5 4.2 94 215-316 25-119 (186)
317 PRK04328 hypothetical protein; 95.2 0.065 1.4E-06 57.2 8.5 49 202-250 10-58 (249)
318 PF00485 PRK: Phosphoribulokin 95.2 0.017 3.7E-07 59.2 3.9 26 217-242 1-26 (194)
319 COG0563 Adk Adenylate kinase a 95.2 0.053 1.1E-06 54.3 7.3 23 217-239 2-24 (178)
320 TIGR03499 FlhF flagellar biosy 95.2 0.057 1.2E-06 58.8 8.1 28 214-241 193-220 (282)
321 PRK13531 regulatory ATPase Rav 95.2 0.029 6.4E-07 64.2 6.0 46 192-241 20-65 (498)
322 KOG1969 DNA replication checkp 95.2 0.048 1E-06 63.9 7.6 77 213-310 324-400 (877)
323 TIGR00416 sms DNA repair prote 95.2 0.064 1.4E-06 62.3 8.8 52 199-250 78-129 (454)
324 PF00437 T2SE: Type II/IV secr 95.1 0.046 9.9E-07 59.3 7.1 126 193-335 105-232 (270)
325 PRK15115 response regulator Gl 95.1 2 4.4E-05 50.3 21.5 47 192-238 134-180 (444)
326 COG1875 NYN ribonuclease and A 95.1 0.097 2.1E-06 56.6 9.0 35 298-335 352-388 (436)
327 cd03247 ABCC_cytochrome_bd The 95.1 0.073 1.6E-06 53.7 7.9 34 215-249 28-61 (178)
328 KOG2035 Replication factor C, 95.1 1.1 2.3E-05 47.0 16.0 208 192-416 13-259 (351)
329 PRK14722 flhF flagellar biosyn 95.1 0.15 3.3E-06 57.0 11.0 35 215-249 137-173 (374)
330 KOG2739 Leucine-rich acidic nu 95.1 0.012 2.7E-07 60.7 2.2 89 717-805 61-158 (260)
331 COG0465 HflB ATP-dependent Zn 95.1 0.18 4E-06 59.2 12.0 173 191-390 149-355 (596)
332 KOG3928 Mitochondrial ribosome 95.0 0.17 3.6E-06 55.7 10.6 53 345-400 404-460 (461)
333 COG0468 RecA RecA/RadA recombi 95.0 0.093 2E-06 56.2 8.7 48 203-250 48-95 (279)
334 PTZ00494 tuzin-like protein; P 95.0 1.6 3.5E-05 48.9 18.0 160 187-363 366-542 (664)
335 cd03238 ABC_UvrA The excision 94.9 0.1 2.2E-06 52.3 8.3 22 215-236 21-42 (176)
336 PRK09270 nucleoside triphospha 94.9 0.036 7.7E-07 58.5 5.4 32 212-243 30-61 (229)
337 COG4088 Predicted nucleotide k 94.9 0.059 1.3E-06 53.5 6.3 29 216-244 2-30 (261)
338 KOG2004 Mitochondrial ATP-depe 94.9 0.026 5.6E-07 65.8 4.4 53 192-244 411-467 (906)
339 cd02027 APSK Adenosine 5'-phos 94.9 0.1 2.2E-06 50.9 8.1 24 217-240 1-24 (149)
340 cd02019 NK Nucleoside/nucleoti 94.8 0.022 4.8E-07 47.2 2.8 23 217-239 1-23 (69)
341 cd01125 repA Hexameric Replica 94.8 0.19 4.2E-06 53.3 10.8 24 217-240 3-26 (239)
342 PRK05022 anaerobic nitric oxid 94.8 0.36 7.8E-06 57.5 14.0 49 191-239 186-234 (509)
343 PRK03839 putative kinase; Prov 94.8 0.022 4.8E-07 57.6 3.3 24 217-240 2-25 (180)
344 PF08433 KTI12: Chromatin asso 94.8 0.09 1.9E-06 56.5 7.9 26 216-241 2-27 (270)
345 PRK00625 shikimate kinase; Pro 94.8 0.023 4.9E-07 56.8 3.2 24 217-240 2-25 (173)
346 TIGR00150 HI0065_YjeE ATPase, 94.8 0.041 8.8E-07 51.9 4.6 41 200-240 7-47 (133)
347 PRK05480 uridine/cytidine kina 94.7 0.027 5.9E-07 58.5 3.9 27 213-239 4-30 (209)
348 PTZ00301 uridine kinase; Provi 94.7 0.026 5.7E-07 58.2 3.7 29 215-243 3-31 (210)
349 PF10236 DAP3: Mitochondrial r 94.7 0.73 1.6E-05 50.8 15.2 48 346-393 258-306 (309)
350 KOG2739 Leucine-rich acidic nu 94.7 0.022 4.8E-07 58.8 3.0 115 627-764 43-161 (260)
351 PRK08233 hypothetical protein; 94.7 0.024 5.2E-07 57.4 3.3 26 215-240 3-28 (182)
352 TIGR03574 selen_PSTK L-seryl-t 94.7 0.089 1.9E-06 56.3 7.8 26 217-242 1-26 (249)
353 PRK12726 flagellar biosynthesi 94.7 0.17 3.6E-06 56.3 9.8 37 214-250 205-241 (407)
354 COG4618 ArpD ABC-type protease 94.7 0.071 1.5E-06 60.2 7.0 22 216-237 363-384 (580)
355 KOG1947 Leucine rich repeat pr 94.7 0.0024 5.2E-08 75.8 -4.8 65 623-687 239-307 (482)
356 PRK07132 DNA polymerase III su 94.7 2.3 5E-05 46.4 18.6 166 201-395 5-184 (299)
357 CHL00206 ycf2 Ycf2; Provisiona 94.6 0.16 3.4E-06 66.4 10.7 28 213-240 1628-1655(2281)
358 TIGR02788 VirB11 P-type DNA tr 94.6 0.058 1.3E-06 59.6 6.3 109 215-336 144-254 (308)
359 TIGR01420 pilT_fam pilus retra 94.6 0.093 2E-06 58.9 8.0 109 216-337 123-232 (343)
360 COG0572 Udk Uridine kinase [Nu 94.6 0.036 7.8E-07 56.4 4.2 30 213-242 6-35 (218)
361 PRK12727 flagellar biosynthesi 94.6 0.24 5.1E-06 57.5 11.2 29 214-242 349-377 (559)
362 PRK04301 radA DNA repair and r 94.6 0.079 1.7E-06 58.9 7.3 49 202-250 89-143 (317)
363 PRK05703 flhF flagellar biosyn 94.6 0.24 5.3E-06 57.0 11.4 36 215-250 221-258 (424)
364 COG1121 ZnuC ABC-type Mn/Zn tr 94.6 0.077 1.7E-06 55.6 6.6 52 287-340 147-204 (254)
365 cd03222 ABC_RNaseL_inhibitor T 94.6 0.059 1.3E-06 54.0 5.6 114 215-350 25-146 (177)
366 PRK04040 adenylate kinase; Pro 94.5 0.031 6.6E-07 56.8 3.5 25 216-240 3-27 (188)
367 cd03246 ABCC_Protease_Secretio 94.5 0.069 1.5E-06 53.6 6.0 127 215-349 28-168 (173)
368 PF00910 RNA_helicase: RNA hel 94.5 0.022 4.8E-07 52.0 2.2 25 218-242 1-25 (107)
369 PRK00131 aroK shikimate kinase 94.5 0.031 6.7E-07 56.0 3.5 26 215-240 4-29 (175)
370 COG4608 AppF ABC-type oligopep 94.5 0.11 2.4E-06 54.6 7.5 124 215-341 39-176 (268)
371 KOG0729 26S proteasome regulat 94.5 0.095 2.1E-06 53.8 6.8 55 193-252 178-243 (435)
372 TIGR02782 TrbB_P P-type conjug 94.5 0.11 2.5E-06 56.8 8.1 88 216-316 133-223 (299)
373 KOG1970 Checkpoint RAD17-RFC c 94.5 0.65 1.4E-05 53.2 13.8 41 199-239 89-134 (634)
374 KOG0743 AAA+-type ATPase [Post 94.4 0.46 9.9E-06 53.3 12.5 24 216-239 236-259 (457)
375 cd03216 ABC_Carb_Monos_I This 94.4 0.046 1E-06 54.2 4.5 126 215-349 26-155 (163)
376 COG2884 FtsE Predicted ATPase 94.4 0.12 2.7E-06 50.8 7.1 54 287-342 145-204 (223)
377 KOG0066 eIF2-interacting prote 94.4 0.95 2.1E-05 50.0 14.4 30 208-237 606-635 (807)
378 PF10137 TIR-like: Predicted n 94.3 0.1 2.2E-06 48.6 6.2 61 20-83 1-61 (125)
379 cd03115 SRP The signal recogni 94.3 0.21 4.6E-06 50.0 9.1 26 217-242 2-27 (173)
380 cd01122 GP4d_helicase GP4d_hel 94.3 0.27 5.8E-06 53.4 10.6 54 214-273 29-83 (271)
381 TIGR00235 udk uridine kinase. 94.3 0.041 9E-07 57.0 4.1 28 213-240 4-31 (207)
382 TIGR03575 selen_PSTK_euk L-ser 94.3 0.11 2.3E-06 57.5 7.4 23 218-240 2-24 (340)
383 PF03308 ArgK: ArgK protein; 94.3 0.07 1.5E-06 55.7 5.5 42 201-242 15-56 (266)
384 PF06068 TIP49: TIP49 C-termin 94.3 0.072 1.6E-06 58.3 5.7 59 190-248 22-83 (398)
385 cd01857 HSR1_MMR1 HSR1/MMR1. 94.2 0.4 8.6E-06 46.2 10.4 51 64-117 3-53 (141)
386 PRK13947 shikimate kinase; Pro 94.2 0.035 7.5E-07 55.6 3.1 26 217-242 3-28 (171)
387 PRK15429 formate hydrogenlyase 94.2 0.12 2.6E-06 63.9 8.5 48 192-239 376-423 (686)
388 TIGR01360 aden_kin_iso1 adenyl 94.2 0.039 8.4E-07 56.2 3.5 26 214-239 2-27 (188)
389 TIGR00708 cobA cob(I)alamin ad 94.2 0.19 4E-06 49.7 7.9 26 216-241 6-31 (173)
390 PF00406 ADK: Adenylate kinase 94.1 0.1 2.3E-06 50.9 6.2 91 220-317 1-94 (151)
391 PF08423 Rad51: Rad51; InterP 94.1 0.06 1.3E-06 57.6 4.8 38 201-238 24-61 (256)
392 PRK06547 hypothetical protein; 94.1 0.05 1.1E-06 54.3 3.9 27 213-239 13-39 (172)
393 KOG0738 AAA+-type ATPase [Post 94.0 0.1 2.2E-06 56.8 6.2 75 167-243 189-273 (491)
394 PRK00889 adenylylsulfate kinas 94.0 0.066 1.4E-06 53.8 4.7 27 215-241 4-30 (175)
395 KOG0739 AAA+-type ATPase [Post 94.0 0.5 1.1E-05 49.7 10.9 49 192-240 133-191 (439)
396 cd03232 ABC_PDR_domain2 The pl 94.0 0.15 3.2E-06 52.1 7.3 24 215-238 33-56 (192)
397 cd00227 CPT Chloramphenicol (C 94.0 0.046 1E-06 54.9 3.5 25 216-240 3-27 (175)
398 COG1224 TIP49 DNA helicase TIP 93.9 0.11 2.4E-06 55.9 6.3 58 189-246 36-96 (450)
399 COG1120 FepC ABC-type cobalami 93.9 0.12 2.6E-06 54.5 6.4 23 215-237 28-50 (258)
400 COG3854 SpoIIIAA ncharacterize 93.9 0.21 4.6E-06 50.5 7.7 108 216-334 138-252 (308)
401 PRK05986 cob(I)alamin adenolsy 93.9 0.14 2.9E-06 51.5 6.4 27 215-241 22-48 (191)
402 KOG2123 Uncharacterized conser 93.9 0.0027 5.8E-08 65.4 -5.6 80 600-681 37-123 (388)
403 PRK11388 DNA-binding transcrip 93.9 0.66 1.4E-05 57.1 13.9 48 191-238 324-371 (638)
404 PHA02244 ATPase-like protein 93.8 0.25 5.4E-06 54.7 8.9 50 188-241 92-145 (383)
405 PRK08356 hypothetical protein; 93.8 0.14 3E-06 52.5 6.7 21 216-236 6-26 (195)
406 cd03230 ABC_DR_subfamily_A Thi 93.8 0.12 2.5E-06 51.9 5.9 34 215-249 26-59 (173)
407 COG5635 Predicted NTPase (NACH 93.7 0.42 9.1E-06 60.4 12.1 195 216-417 223-449 (824)
408 cd03253 ABCC_ATM1_transporter 93.7 0.25 5.5E-06 52.3 8.8 24 215-238 27-50 (236)
409 COG0467 RAD55 RecA-superfamily 93.7 0.16 3.4E-06 54.8 7.2 47 204-250 12-58 (260)
410 COG5238 RNA1 Ran GTPase-activa 93.7 0.0055 1.2E-07 62.9 -3.7 60 721-780 185-253 (388)
411 PRK10820 DNA-binding transcrip 93.7 0.27 6E-06 58.5 9.9 48 190-237 202-249 (520)
412 COG1428 Deoxynucleoside kinase 93.7 0.052 1.1E-06 54.6 3.1 26 215-240 4-29 (216)
413 PF00560 LRR_1: Leucine Rich R 93.7 0.026 5.5E-07 34.9 0.6 21 747-767 1-21 (22)
414 COG3910 Predicted ATPase [Gene 93.7 0.49 1.1E-05 46.6 9.5 62 287-350 137-202 (233)
415 PRK03846 adenylylsulfate kinas 93.7 0.089 1.9E-06 54.1 5.0 37 213-249 22-58 (198)
416 COG0003 ArsA Predicted ATPase 93.7 0.094 2E-06 57.5 5.3 35 215-249 2-36 (322)
417 TIGR03600 phage_DnaB phage rep 93.6 0.52 1.1E-05 54.7 11.9 74 194-274 174-248 (421)
418 PRK10923 glnG nitrogen regulat 93.6 0.82 1.8E-05 54.1 13.8 47 192-238 138-184 (469)
419 cd02028 UMPK_like Uridine mono 93.6 0.07 1.5E-06 53.8 4.1 26 217-242 1-26 (179)
420 TIGR01359 UMP_CMP_kin_fam UMP- 93.6 0.045 9.7E-07 55.5 2.7 23 217-239 1-23 (183)
421 PRK12724 flagellar biosynthesi 93.6 0.38 8.2E-06 54.4 10.0 25 215-239 223-247 (432)
422 TIGR02524 dot_icm_DotB Dot/Icm 93.6 0.13 2.8E-06 57.7 6.5 94 215-317 134-232 (358)
423 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.11 2.3E-06 55.9 5.6 38 213-250 34-71 (259)
424 TIGR00390 hslU ATP-dependent p 93.6 0.085 1.8E-06 59.3 4.8 52 192-243 12-75 (441)
425 COG0529 CysC Adenylylsulfate k 93.6 0.096 2.1E-06 50.9 4.5 35 214-248 22-56 (197)
426 PRK13657 cyclic beta-1,2-gluca 93.6 0.18 3.9E-06 61.5 8.2 23 215-237 361-383 (588)
427 COG2274 SunT ABC-type bacterio 93.5 0.19 4E-06 61.5 8.1 22 216-237 500-521 (709)
428 cd03217 ABC_FeS_Assembly ABC-t 93.5 0.1 2.2E-06 53.8 5.1 24 215-238 26-49 (200)
429 PRK11174 cysteine/glutathione 93.5 0.16 3.5E-06 61.9 7.7 33 215-249 376-408 (588)
430 PRK13949 shikimate kinase; Pro 93.4 0.058 1.3E-06 53.8 3.0 24 217-240 3-26 (169)
431 TIGR02236 recomb_radA DNA repa 93.4 0.22 4.7E-06 55.3 7.9 49 202-250 82-136 (310)
432 cd03240 ABC_Rad50 The catalyti 93.4 0.23 5.1E-06 51.2 7.6 20 217-236 24-43 (204)
433 PRK13948 shikimate kinase; Pro 93.4 0.067 1.4E-06 53.8 3.4 27 214-240 9-35 (182)
434 COG1102 Cmk Cytidylate kinase 93.4 0.063 1.4E-06 51.3 2.9 25 217-241 2-26 (179)
435 cd00464 SK Shikimate kinase (S 93.4 0.063 1.4E-06 52.5 3.2 22 218-239 2-23 (154)
436 cd03278 ABC_SMC_barmotin Barmo 93.3 0.36 7.8E-06 49.5 8.8 21 217-237 24-44 (197)
437 PF07724 AAA_2: AAA domain (Cd 93.3 0.059 1.3E-06 53.7 2.9 35 215-249 3-38 (171)
438 PRK06217 hypothetical protein; 93.3 0.058 1.2E-06 54.7 2.9 24 217-240 3-26 (183)
439 cd02020 CMPK Cytidine monophos 93.3 0.06 1.3E-06 52.2 2.9 23 217-239 1-23 (147)
440 cd03289 ABCC_CFTR2 The CFTR su 93.3 0.29 6.3E-06 53.0 8.4 33 215-249 30-62 (275)
441 TIGR02655 circ_KaiC circadian 93.3 0.27 5.9E-06 58.0 8.8 51 200-250 248-298 (484)
442 cd00984 DnaB_C DnaB helicase C 93.3 0.56 1.2E-05 49.9 10.6 55 211-271 9-64 (242)
443 PRK05439 pantothenate kinase; 93.3 0.11 2.3E-06 56.8 4.9 29 213-241 84-112 (311)
444 cd02024 NRK1 Nicotinamide ribo 93.3 0.055 1.2E-06 54.6 2.6 23 217-239 1-23 (187)
445 PRK10463 hydrogenase nickel in 93.3 0.14 3.1E-06 55.0 5.8 43 204-248 95-137 (290)
446 COG1703 ArgK Putative periplas 93.2 0.1 2.2E-06 55.2 4.5 41 202-242 38-78 (323)
447 PTZ00088 adenylate kinase 1; P 93.2 0.32 7E-06 50.9 8.3 22 218-239 9-30 (229)
448 cd02025 PanK Pantothenate kina 93.2 0.058 1.3E-06 56.3 2.7 25 217-241 1-25 (220)
449 PRK13946 shikimate kinase; Pro 93.2 0.068 1.5E-06 54.2 3.1 26 215-240 10-35 (184)
450 cd00267 ABC_ATPase ABC (ATP-bi 93.1 0.15 3.3E-06 50.1 5.5 122 216-349 26-153 (157)
451 COG0714 MoxR-like ATPases [Gen 93.1 0.12 2.6E-06 57.8 5.3 55 192-250 24-78 (329)
452 TIGR02533 type_II_gspE general 93.1 0.26 5.7E-06 57.8 8.2 122 195-335 224-346 (486)
453 cd03244 ABCC_MRP_domain2 Domai 93.1 0.37 8E-06 50.4 8.7 23 215-237 30-52 (221)
454 cd03251 ABCC_MsbA MsbA is an e 93.1 0.26 5.6E-06 52.1 7.6 24 215-238 28-51 (234)
455 cd02023 UMPK Uridine monophosp 93.1 0.064 1.4E-06 55.2 2.8 23 217-239 1-23 (198)
456 cd02021 GntK Gluconate kinase 93.1 0.064 1.4E-06 52.3 2.6 23 217-239 1-23 (150)
457 COG0396 sufC Cysteine desulfur 93.0 0.2 4.4E-06 51.0 6.1 60 287-348 152-217 (251)
458 PRK05201 hslU ATP-dependent pr 93.0 0.13 2.7E-06 58.0 5.1 51 192-242 15-77 (443)
459 PF03266 NTPase_1: NTPase; In 93.0 0.097 2.1E-06 52.0 3.8 24 218-241 2-25 (168)
460 PRK14528 adenylate kinase; Pro 93.0 0.4 8.7E-06 48.6 8.4 24 216-239 2-25 (186)
461 COG1136 SalX ABC-type antimicr 93.0 0.32 6.9E-06 50.3 7.6 61 287-350 150-216 (226)
462 TIGR02525 plasmid_TraJ plasmid 93.0 0.19 4E-06 56.6 6.4 108 216-334 150-259 (372)
463 COG0703 AroK Shikimate kinase 92.9 0.083 1.8E-06 51.8 3.1 27 217-243 4-30 (172)
464 cd03213 ABCG_EPDR ABCG transpo 92.9 0.3 6.5E-06 50.0 7.5 25 215-239 35-59 (194)
465 TIGR02238 recomb_DMC1 meiotic 92.9 0.22 4.7E-06 54.9 6.8 37 201-237 82-118 (313)
466 COG1419 FlhF Flagellar GTP-bin 92.9 0.38 8.2E-06 53.6 8.5 35 215-249 203-239 (407)
467 TIGR02322 phosphon_PhnN phosph 92.9 0.08 1.7E-06 53.4 3.1 25 216-240 2-26 (179)
468 PRK10751 molybdopterin-guanine 92.9 0.12 2.6E-06 51.3 4.2 28 214-241 5-32 (173)
469 TIGR01650 PD_CobS cobaltochela 92.9 0.2 4.4E-06 54.7 6.3 54 188-245 41-94 (327)
470 cd03254 ABCC_Glucan_exporter_l 92.8 0.38 8.2E-06 50.7 8.4 24 215-238 29-52 (229)
471 cd03233 ABC_PDR_domain1 The pl 92.8 0.3 6.4E-06 50.4 7.3 26 215-240 33-58 (202)
472 cd00071 GMPK Guanosine monopho 92.7 0.071 1.5E-06 51.1 2.4 26 217-242 1-26 (137)
473 COG4240 Predicted kinase [Gene 92.7 0.36 7.8E-06 48.8 7.2 82 213-298 48-134 (300)
474 KOG0735 AAA+-type ATPase [Post 92.7 1.3 2.9E-05 52.2 12.7 150 193-365 668-848 (952)
475 PRK11176 lipid transporter ATP 92.7 0.19 4.2E-06 61.2 6.7 24 215-238 369-392 (582)
476 cd03248 ABCC_TAP TAP, the Tran 92.7 0.36 7.7E-06 50.8 7.8 24 215-238 40-63 (226)
477 PF13306 LRR_5: Leucine rich r 92.6 0.23 4.9E-06 46.8 5.8 60 526-588 6-66 (129)
478 PF00560 LRR_1: Leucine Rich R 92.6 0.037 8E-07 34.2 0.2 17 606-622 2-18 (22)
479 PF03205 MobB: Molybdopterin g 92.6 0.14 3.1E-06 49.1 4.3 35 216-250 1-36 (140)
480 PRK15453 phosphoribulokinase; 92.6 0.16 3.4E-06 54.2 4.9 29 213-241 3-31 (290)
481 PRK12339 2-phosphoglycerate ki 92.6 0.1 2.2E-06 53.4 3.4 25 215-239 3-27 (197)
482 TIGR03881 KaiC_arch_4 KaiC dom 92.6 0.2 4.4E-06 52.7 5.9 49 202-250 7-55 (229)
483 cd03369 ABCC_NFT1 Domain 2 of 92.6 0.42 9.1E-06 49.5 8.2 24 215-238 34-57 (207)
484 cd03250 ABCC_MRP_domain1 Domai 92.6 0.62 1.4E-05 48.0 9.4 25 214-238 30-54 (204)
485 PRK05057 aroK shikimate kinase 92.5 0.098 2.1E-06 52.3 3.2 25 216-240 5-29 (172)
486 PRK14530 adenylate kinase; Pro 92.4 0.099 2.1E-06 54.5 3.2 23 217-239 5-27 (215)
487 PF02374 ArsA_ATPase: Anion-tr 92.4 0.15 3.3E-06 55.9 4.8 27 216-242 2-28 (305)
488 PRK13900 type IV secretion sys 92.4 0.19 4E-06 55.9 5.5 93 215-316 160-254 (332)
489 COG2401 ABC-type ATPase fused 92.4 0.26 5.6E-06 54.2 6.3 60 288-347 516-580 (593)
490 PF00154 RecA: recA bacterial 92.4 0.25 5.5E-06 54.0 6.3 50 201-250 38-88 (322)
491 TIGR00958 3a01208 Conjugate Tr 92.4 0.43 9.3E-06 59.5 9.3 24 215-238 507-530 (711)
492 KOG0927 Predicted transporter 92.4 0.28 6E-06 56.0 6.7 52 289-344 231-288 (614)
493 PRK05973 replicative DNA helic 92.4 0.36 7.7E-06 50.6 7.2 38 213-250 62-99 (237)
494 COG1936 Predicted nucleotide k 92.4 0.097 2.1E-06 50.8 2.7 20 217-236 2-21 (180)
495 PLN03187 meiotic recombination 92.4 0.28 6E-06 54.5 6.7 36 202-237 113-148 (344)
496 PRK10436 hypothetical protein; 92.4 0.51 1.1E-05 54.8 9.1 106 195-316 200-306 (462)
497 TIGR02857 CydD thiol reductant 92.3 0.4 8.6E-06 57.7 8.7 23 215-237 348-370 (529)
498 PRK13975 thymidylate kinase; P 92.2 0.12 2.5E-06 53.1 3.4 26 216-241 3-28 (196)
499 KOG1051 Chaperone HSP104 and r 92.2 0.74 1.6E-05 56.8 10.6 104 193-310 563-673 (898)
500 COG2842 Uncharacterized ATPase 92.2 1.8 3.9E-05 46.2 12.0 123 186-320 66-190 (297)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-129 Score=1243.09 Aligned_cols=934 Identities=31% Similarity=0.531 Sum_probs=735.2
Q ss_pred CCCCCCCccccEEEccccCcCccchHHHHHHHHHhCCCeEEecCCcCCCCCcchHHHHHHHHhcceEEEEecCCcccCcc
Q 001805 10 VPYPLPHWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTW 89 (1011)
Q Consensus 10 ~~~~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~ 89 (1011)
|+++++.|+||||+||||+|+|++|++||+++|.++||.+|+|+ ++++|+.|.+++.+||++|+++|||||++||+|+|
T Consensus 4 ~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~w 82 (1153)
T PLN03210 4 SSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSW 82 (1153)
T ss_pred CCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcccchH
Confidence 34555789999999999999999999999999999999999998 79999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCceEEEEEeeccCCccccccchHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhcCccccC-cc
Q 001805 90 CLDELVHILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFARHEEILAQNKEKVQKWRDTLKEVANICGWELKD-RN 168 (1011)
Q Consensus 90 c~~El~~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~~-~~ 168 (1011)
||+||++|++|++..| +.|+||||+|||++||+|+|+|+++|++++++ ...+++++||+||++||+++||++.+ ++
T Consensus 83 cl~el~~i~~~~~~~~-~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~~~ 159 (1153)
T PLN03210 83 CLNELLEIVRCKEELG-QLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNWPN 159 (1153)
T ss_pred HHHHHHHHHHhhhhcC-ceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCCCC
Confidence 9999999999999988 99999999999999999999999999998874 34578999999999999999999986 89
Q ss_pred hhHHHHHHHhhcccC-CCccccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCcee
Q 001805 169 QSEFILEVVKVISSK-SPIISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSS 247 (1011)
Q Consensus 169 e~~~i~~iv~~~~~~-~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 247 (1011)
|+++|++||++|..+ ...++...+++|||+.+++++.++|..+.+++++|+||||||+||||||+++|+++..+|++.+
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~v 239 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSV 239 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEE
Confidence 999999999999999 7777888899999999999999999877788999999999999999999999999999999999
Q ss_pred Eeeeh--hh---hhc------cCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHh
Q 001805 248 FLANV--RE---ISK------EGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLA 316 (1011)
Q Consensus 248 ~~~~~--~~---~~~------~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~ 316 (1011)
|+... .. ... ......++++++.+++........ ....++++++++|+||||||||+.++++.+.
T Consensus 240 fv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~----~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~ 315 (1153)
T PLN03210 240 FIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIY----HLGAMEERLKHRKVLIFIDDLDDQDVLDALA 315 (1153)
T ss_pred EeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccC----CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence 98542 11 111 011345677777777654433221 2367888999999999999999999999999
Q ss_pred cCCCCCCCCceEEEEeCCchhhhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 317 GKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 317 ~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
....|+++|++||||||+++++..++++++|+|+.|+++||++||+++||+...+++++.+++++|+++|+|+||||+++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 98889999999999999999998888889999999999999999999999988777789999999999999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHhcCChhHHHHHHHHhhcCCch-hhHHHHhhhccccCCCCHHHHHHHHhhCCCCcccchhhc
Q 001805 397 GSFLYGKTTKEWQSAVKRLKRDSENEILDILQISFDGLKE-TEKEIFLDIACFHRGENRDYVTKILDYCDFDPVIGIRVL 475 (1011)
Q Consensus 397 ~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L 475 (1011)
|++|++++..+|+.++++++...+..|.++|++||++|++ .+|.+|+++||||++.+.+.+..+++.+++.+..+++.|
T Consensus 396 gs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L 475 (1153)
T PLN03210 396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL 475 (1153)
T ss_pred HHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHH
Confidence 9999999999999999999988888999999999999986 589999999999999999999999999999999999999
Q ss_pred cccccEEEecCCeEeehHHHHHHHHHHHhhcCCCCCCCccccccccCCc----------------------------ccc
Q 001805 476 IDKSLIEVLSNNQLWMHDFLREMGQQIVKRQCPEDPGKRSRLWKEADNF----------------------------PEI 527 (1011)
Q Consensus 476 ~~~sLi~~~~~~~~~mHdlv~~~~~~i~~~e~~~~~~~~~rl~~~~~~~----------------------------~~~ 527 (1011)
++++||+.. .+++.|||++|+||++++++++ .+|++|+|+|.++|+. ..+
T Consensus 476 ~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 476 VDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 999999987 6789999999999999999987 7899999999876543 234
Q ss_pred ccCCCcceeE-------------------------------EecCCCCCCCCCCCccCCCCCeeecccCCCCccccCccc
Q 001805 528 VGSMKCLSDL-------------------------------LLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNI 576 (1011)
Q Consensus 528 ~~~~~~Lr~L-------------------------------~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l 576 (1011)
|.+|.+|++| +|.+|+++.+|. .+ .+.+|+.|++++| .+..+|..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~-~f-~~~~L~~L~L~~s-~l~~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS-NF-RPENLVKLQMQGS-KLEKLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC-cC-CccCCcEEECcCc-ccccccccc
Confidence 5555555555 444555555554 22 4578888888875 477777777
Q ss_pred ccCCCCCeeeeCCCCCCCcCcccccCcchhhhcccCCc-cccccCcccCCCCCCcEEeecCCCCCcccCcccccccccce
Q 001805 577 SALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHLEGT-AIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKK 655 (1011)
Q Consensus 577 ~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~-~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 655 (1011)
..+.+|+.|+|++|..+..+|. +..+++|++|+|++| .+..+|.+++++++|+.|++++|.+++.+|..+ ++++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 7888888889888877888875 677888899998875 567788888888999999999888888888776 7888888
Q ss_pred ecccccccCCcCCcccCCCCCCcEEEcCCCCC-CC---------------------------------------------
Q 001805 656 LYLSGCSKLKNVPENLGKVESLEVLELSGCKG-PP--------------------------------------------- 689 (1011)
Q Consensus 656 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~-~~--------------------------------------------- 689 (1011)
|++++|+.+..+|.. ..+|+.|++++|.+ .+
T Consensus 709 L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 709 LNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred EeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 888888877777653 23455555555554 33
Q ss_pred ---------CCCCCCCCCccccc-ccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCe
Q 001805 690 ---------VSSSWYLPFPISLK-RSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFV 759 (1011)
Q Consensus 690 ---------~~~~~~l~~L~~L~-~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 759 (1011)
|.++..+++|+.|. .+|+.+.. +|...++++|+.|+|++|... ..+|. ..++|+.|+|++|.++
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~--LP~~~~L~sL~~L~Ls~c~~L-~~~p~---~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLET--LPTGINLESLESLDLSGCSRL-RTFPD---ISTNISDLNLSRTGIE 859 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCe--eCCCCCccccCEEECCCCCcc-ccccc---cccccCEeECCCCCCc
Confidence 33333333333333 22222221 222223444444444444321 11222 2356788888888888
Q ss_pred ecCccccCCCCCCEEEEcCCcCccccCCCC---CCccEEeecCCCcccccccchhccc---------------ccccccc
Q 001805 760 TAPASINRLFNLEELELEDCKRLQSMPQLP---PNIKEVGVNGCASLEKLSDALKLCK---------------SENISIS 821 (1011)
Q Consensus 760 ~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~~L~~L~l~~c~~L~~l~~~~~~~~---------------~~~~~~~ 821 (1011)
.+|.++..+++|+.|+|++|++++.+|..+ ++|+.|++.+|.+|+.++....... .+..+.+
T Consensus 860 ~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~n 939 (1153)
T PLN03210 860 EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN 939 (1153)
T ss_pred cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccc
Confidence 999999999999999999999999998654 5788889999999988765321110 0011222
Q ss_pred cchhhhhcccchhHHHHHHHHHHhcCCCceeEEEecCCCCCCCCccccCCCceEE-EEcCCCccCCCceeeEEEEEEEec
Q 001805 822 CIDNLKLLSNDGLAFSMLKEYLEAVSRPMQKFGIVVPGSEIPEWFMHQNDGSSIK-FIMPSNLYCKNKALGYAVCCVFHV 900 (1011)
Q Consensus 822 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~~gf~~c~v~~~ 900 (1011)
|+.. . .. . +++. ......+++||.++|+||.||+.|++++ |++|+.|+ ...|.||++|+|+++
T Consensus 940 C~~L-~-----~~---a---~l~~---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~ 1003 (1153)
T PLN03210 940 CFNL-D-----QE---A---LLQQ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-CQPFFRFRACAVVDS 1003 (1153)
T ss_pred ccCC-C-----ch---h---hhcc---cccceEEECCCccCchhccCCcccceeeeeccCCccc-CCCccceEEEEEEec
Confidence 2111 0 00 0 1111 1123357789999999999999999998 99999998 678999999999987
Q ss_pred cCCCCCcccCCCCCceeeeeEEecCCCCeEEeecccccCCCCCeEEEEEecccccc----------c--cccCCCCCe--
Q 001805 901 REHSPGIQTRRSYPTHQLNCQMKGSSTSYSIEFREKFAQAESGHLWLLYLSLKKCY----------Y--SNWCFDNNL-- 966 (1011)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~s~h~~~~~~~~~~~~----------~--~~~~~~~~~-- 966 (1011)
... .+......++|.|.+.+..+..+. ....+|+|+.|.+..++. + ..+..+..+
T Consensus 1004 ~~~----~~~~~~~~~~~~c~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1153)
T PLN03210 1004 ESF----FIISVSFDIQVCCRFIDRLGNHFD-------SPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVD 1072 (1153)
T ss_pred Ccc----ccCCCceeEEEEEEEECCCCCccc-------cCCCceeEeeeccccceEEecccccccccccchhccCCceee
Confidence 664 111224456788888766555432 134555555554432211 0 000111234
Q ss_pred EEEEEeeccCCCeEEeEeeEEEEEecccc
Q 001805 967 IELSFRPVSGSGLQVKRCGFHPIYRHKVE 995 (1011)
Q Consensus 967 ~~~~~~~~~~~~~~vk~cGv~liy~~~~~ 995 (1011)
++|.|... ...++||+|||+++|..+..
T Consensus 1073 ~~f~~~~~-~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1073 IQFRLTNK-NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred EEEEEecC-CCCeEEEeeeEEEeccCCCc
Confidence 45555432 23479999999999966544
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-57 Score=547.41 Aligned_cols=458 Identities=27% Similarity=0.334 Sum_probs=381.0
Q ss_pred cccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH---hhccCCceeEeeehhhhhccCChHHHHHHHHHH
Q 001805 195 VGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL---TSHKFEGSSFLANVREISKEGGLISLQKQLLSQ 271 (1011)
Q Consensus 195 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 271 (1011)
||.+..++++...|..+. .++++|+||||+||||||+.++++ ++.+|+..+|+. +++......++++|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999997643 389999999999999999999984 678999999998 78889999999999998
Q ss_pred HhCCCCCC-ccccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchhhhc-cCcCcEEEc
Q 001805 272 LLKLPNNG-IWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLLMT-HGVDEVYKL 349 (1011)
Q Consensus 272 l~~~~~~~-~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~-~~~~~~~~l 349 (1011)
+....... .....+....+.+.|.++|+||||||||+..+|+.+..+++....||+|++|||++.|+.. ++++..+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 64433222 2223567888999999999999999999999999999999887789999999999999988 888889999
Q ss_pred CCCCHHHHHHHHHHHhhccC-CCCccHHHHHHHHHHHhCCCchHHHHHHHHhcCC-ChHHHHHHHHHHhcC-------Ch
Q 001805 350 RELHDDNALRLFCKKAFKTH-QPKKGYEQLSEWVTKYSGGLPLALKVLGSFLYGK-TTKEWQSAVKRLKRD-------SE 420 (1011)
Q Consensus 350 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i~~~~~GlPLal~~~~~~L~~~-~~~~w~~~l~~l~~~-------~~ 420 (1011)
+.|+.+|||+||.+.+|... ...+..+++|++++++|+|+|||+.++|..|+.+ +..+|+.+...+... ..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 3335589999999999999999999999999984 667999999988654 25
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhhhccccCCCC--HHHHHHHHhhCCCCc------------ccchhhccccccEEEecC
Q 001805 421 NEILDILQISFDGLKETEKEIFLDIACFHRGEN--RDYVTKILDYCDFDP------------VIGIRVLIDKSLIEVLSN 486 (1011)
Q Consensus 421 ~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~l~~~~~~~~~~~------------~~~l~~L~~~sLi~~~~~ 486 (1011)
+.+..+|+.|||.|+++.|.||+|||.||+++. ++.+...|.++|+.. ...+.+|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 689999999999999889999999999999975 578999999999642 233889999999988642
Q ss_pred ----CeEeehHHHHHHHHHHHhhcCCCCCCCccccccccCCccccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeec
Q 001805 487 ----NQLWMHDFLREMGQQIVKRQCPEDPGKRSRLWKEADNFPEIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLN 562 (1011)
Q Consensus 487 ----~~~~mHdlv~~~~~~i~~~e~~~~~~~~~rl~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~ 562 (1011)
..+.|||++|+||..++.+...........-- ..-.......+....|...+.++.+..++.. ...++|++|-
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLl 551 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEENQIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLL 551 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccceEEECC-cCccccccccchhheeEEEEeccchhhccCC--CCCCccceEE
Confidence 58999999999999999844322211100000 0000011223345677788888877776652 3456899999
Q ss_pred ccCCCC-ccccCc-ccccCCCCCeeeeCCCCCCCcCcccccCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCC
Q 001805 563 VEGCNK-LERLPR-NISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNL 640 (1011)
Q Consensus 563 L~~~~~-l~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l 640 (1011)
+..+.. +..++. .|..++.|++|||++|..+.++|+.+++|-+||+|+|+++.++.+|.++++|++|.+||+..+..+
T Consensus 552 l~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 552 LQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred EeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccc
Confidence 988653 666665 588899999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCcccccccccceeccccc
Q 001805 641 LSLPCTINGLKSLKKLYLSGC 661 (1011)
Q Consensus 641 ~~lp~~i~~l~~L~~L~l~~c 661 (1011)
..+|..+..|++|++|.+..-
T Consensus 632 ~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 632 ESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccchhhhcccccEEEeecc
Confidence 888887778999999999763
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=6.9e-42 Score=327.41 Aligned_cols=154 Identities=29% Similarity=0.504 Sum_probs=141.3
Q ss_pred CCCCCccccEEEccccCcCccchHHHHHHHHHhCCCeEEecCCcCCCCCcchHHHHHHHHhcceEEEEecCCcccCcchH
Q 001805 12 YPLPHWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTWCL 91 (1011)
Q Consensus 12 ~~~~~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c~ 91 (1011)
+++...+|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++|||||++|++|+||+
T Consensus 20 ~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCL 99 (187)
T PLN03194 20 SSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCL 99 (187)
T ss_pred CCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCceEEEEEeeccCCccccc-cchHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhhcCcccc--Ccc
Q 001805 92 DELVHILECKNKNHQQMVYPIFYDVEPTDVRKQ-SGILEAVFARHEEILAQNKEKVQKWRDTLKEVANICGWELK--DRN 168 (1011)
Q Consensus 92 ~El~~~~~~~~~~~~~~v~pvf~~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a~~~g~~~~--~~~ 168 (1011)
+||++|++|. +.|+||||+|||++||+| .|. ...+++++||+||++||+++||++. +++
T Consensus 100 dEL~~I~e~~-----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~ 161 (187)
T PLN03194 100 HELALIMESK-----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGN 161 (187)
T ss_pred HHHHHHHHcC-----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCC
Confidence 9999999873 689999999999999997 443 1347899999999999999999775 489
Q ss_pred hhHHHHHHHhhcccC
Q 001805 169 QSEFILEVVKVISSK 183 (1011)
Q Consensus 169 e~~~i~~iv~~~~~~ 183 (1011)
|+++|++||+.|.++
T Consensus 162 e~e~i~~iv~~v~k~ 176 (187)
T PLN03194 162 WSEVVTMASDAVIKN 176 (187)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998765
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=5e-36 Score=329.97 Aligned_cols=268 Identities=32% Similarity=0.514 Sum_probs=212.5
Q ss_pred cchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH--hhccCCceeEeeehhhhhccCChHHHHHHHHHHHhC
Q 001805 197 IDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL--TSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLK 274 (1011)
Q Consensus 197 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~ 274 (1011)
||.++++|.+.|....++.++|+|+||||+||||||++++++ +..+|+.++|+. .+.......+..+++.++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999876678999999999999999999999987 889999999987 44455668888888888654
Q ss_pred CCCC--CccccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchhhhccCc-CcEEEcCC
Q 001805 275 LPNN--GIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLLMTHGV-DEVYKLRE 351 (1011)
Q Consensus 275 ~~~~--~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~-~~~~~l~~ 351 (1011)
.... ...+..+....+.+.+.++++||||||||+...|+.+...++....|++||||||+..++..... ...++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4221 34455667889999999999999999999999998888877766789999999999988766543 67899999
Q ss_pred CCHHHHHHHHHHHhhccC-CCCccHHHHHHHHHHHhCCCchHHHHHHHHhcC-CChHHHHHHHHHHhcCC------hhHH
Q 001805 352 LHDDNALRLFCKKAFKTH-QPKKGYEQLSEWVTKYSGGLPLALKVLGSFLYG-KTTKEWQSAVKRLKRDS------ENEI 423 (1011)
Q Consensus 352 L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~~i~~~~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~------~~~i 423 (1011)
|+.+||++||.+.++... ...+..++.+++|+++|+|+||||+++|++|+. .+..+|+.+++++.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999998765 334455678999999999999999999999954 36678999988776432 4789
Q ss_pred HHHHHHhhcCCchhhHHHHhhhccccCCCC--HHHHHHHHhhCCCCc
Q 001805 424 LDILQISFDGLKETEKEIFLDIACFHRGEN--RDYVTKILDYCDFDP 468 (1011)
Q Consensus 424 ~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~l~~~~~~~~~~~ 468 (1011)
..++..||+.|+++.|+||+++|+||.+.+ .+.++.+|.++++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999999865 789999999887654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=7.2e-23 Score=263.43 Aligned_cols=259 Identities=26% Similarity=0.297 Sum_probs=143.2
Q ss_pred cccccCCCcceeEEecCCCCC-CCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCc
Q 001805 525 PEIVGSMKCLSDLLLDGTDIK-ELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNM 603 (1011)
Q Consensus 525 ~~~~~~~~~Lr~L~l~~~~~~-~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l 603 (1011)
+.+|..+++|+.|++++|.+. .+|...+..+++|++|+|++|+....+|. ..+.+|++|+|++|.....+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 456667777777777777765 45553334566667777666654444443 234455556666655444556556666
Q ss_pred chhhhcccCCccccc-cCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEc
Q 001805 604 EHVLELHLEGTAIRG-LPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLEL 682 (1011)
Q Consensus 604 ~~L~~L~L~~~~i~~-lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 682 (1011)
++|++|+|++|.+.+ +|.+++++++|++|+|++|.....+|..++++++|++|++++|.....+|..++++++|+.|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 666666666665543 5555666666666666665555555555556666666666665555555555556666666666
Q ss_pred CCCCC--CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCe-
Q 001805 683 SGCKG--PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFV- 759 (1011)
Q Consensus 683 ~~~~~--~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~- 759 (1011)
++|.+ ..|..+..+++|+.|.++.+.+....+..+.++++|+.|+|++|.+. +.+|..+..+++|+.|+|++|.+.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-GEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-cCCChhHcCCCCCcEEECCCCccCC
Confidence 55554 34445555555555555444444333333445555555555555542 234445555555555555555443
Q ss_pred ecCccccCCCCCCEEEEcCCcCccccC
Q 001805 760 TAPASINRLFNLEELELEDCKRLQSMP 786 (1011)
Q Consensus 760 ~lp~~i~~l~~L~~L~L~~c~~L~~lp 786 (1011)
.+|..+..+++|+.|++++|.....+|
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 334444455555555555544333333
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=3.6e-22 Score=256.92 Aligned_cols=274 Identities=23% Similarity=0.197 Sum_probs=130.7
Q ss_pred ccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcch
Q 001805 526 EIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEH 605 (1011)
Q Consensus 526 ~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~ 605 (1011)
..+.++++|++|++++|.+....+..+.++++|++|+|++|.....+|..+.++++|++|+|++|.....+|..++++++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 34444445555555444443221113344444555555444443444444444444444555544444444444444555
Q ss_pred hhhcccCCccccc-cCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCC
Q 001805 606 VLELHLEGTAIRG-LPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSG 684 (1011)
Q Consensus 606 L~~L~L~~~~i~~-lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 684 (1011)
|++|++++|.+.+ +|.+++.+++|++|++++|.....+|..+.++++|++|++++|.....+|..+.++++|+.|++++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 5555555444442 444444555555555554444344444444455555555555444444444444555555555554
Q ss_pred CCC--CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCe-ec
Q 001805 685 CKG--PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFV-TA 761 (1011)
Q Consensus 685 ~~~--~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~-~l 761 (1011)
|.+ ..|..+..+++|+.|.+..+.+....+..++.+++|+.|+|++|++. +.+|..+..+++|+.|++++|++. .+
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~-~~~p~~~~~~~~L~~L~l~~n~l~~~~ 396 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT-GEIPEGLCSSGNLFKLILFSNSLEGEI 396 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE-eeCChhHhCcCCCCEEECcCCEecccC
Confidence 444 33334444455555554444433332233444455555555555442 234455555555555555555544 34
Q ss_pred CccccCCCCCCEEEEcCCcCccccCCC---CCCccEEeecCC
Q 001805 762 PASINRLFNLEELELEDCKRLQSMPQL---PPNIKEVGVNGC 800 (1011)
Q Consensus 762 p~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c 800 (1011)
|..+..+++|+.|++++|.....+|.. .++|+.|++++|
T Consensus 397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 555555666666666665544444421 245566666544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.6e-22 Score=220.88 Aligned_cols=257 Identities=26% Similarity=0.311 Sum_probs=192.7
Q ss_pred cccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcc
Q 001805 525 PEIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNME 604 (1011)
Q Consensus 525 ~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~ 604 (1011)
|..+...+++-.|++++|++..+|..-|-++..|-+|||++ +.++.+|..+..|..|++|.|++|.....--..+..|.
T Consensus 119 P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 119 PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT 197 (1255)
T ss_pred chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch
Confidence 44455566777777777777777776666777777777777 45777777777777777777777642211111223466
Q ss_pred hhhhcccCCcc--ccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEc
Q 001805 605 HVLELHLEGTA--IRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLEL 682 (1011)
Q Consensus 605 ~L~~L~L~~~~--i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 682 (1011)
.|++|++++++ +..+|.++..|.||..++|+.| ++..+|..+.++.+|+.|+||+| .+..+.-..+...+|++|++
T Consensus 198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNl 275 (1255)
T KOG0444|consen 198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNL 275 (1255)
T ss_pred hhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcc
Confidence 77777777764 4457888888888888888865 47788888888888888888884 56666666777788888888
Q ss_pred CCCCC-CCCCCCCCCCCcccccccCCCCCcccCCC-CCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCee
Q 001805 683 SGCKG-PPVSSSWYLPFPISLKRSCSDPTALRLPS-LSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVT 760 (1011)
Q Consensus 683 ~~~~~-~~~~~~~~l~~L~~L~~~~~~l~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~ 760 (1011)
|.|.+ .+|..+..++.|+.|....|.+.-..+|+ ++.+..|+.+...+|.+. -.|+.++.+..|+.|.|+.|.+.+
T Consensus 276 SrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 276 SRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred ccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhcccccceee
Confidence 88888 78888888888888887777777666666 888888888888888873 378888888888888888888888
Q ss_pred cCccccCCCCCCEEEEcCCcCccccC
Q 001805 761 APASINRLFNLEELELEDCKRLQSMP 786 (1011)
Q Consensus 761 lp~~i~~l~~L~~L~L~~c~~L~~lp 786 (1011)
+|..|.-|+.|+.|++..|++|..-|
T Consensus 354 LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhcCCcceeeccCCcCccCCC
Confidence 88888888888888888888886544
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=2.9e-22 Score=218.81 Aligned_cols=276 Identities=25% Similarity=0.352 Sum_probs=239.1
Q ss_pred cccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCc-ccccCCCCCeeeeCCCCCCCcCcccccCc
Q 001805 525 PEIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPR-NISALKYHPTWNLSGLLKFSNFPEIMTNM 603 (1011)
Q Consensus 525 ~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~~~~~l 603 (1011)
|..+-+|..|..|+++.|.++..|. .+.+.+++.+|+|++ ++++.+|. -+-+|..|-+|+||+| .++.+|..+..+
T Consensus 96 P~diF~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL 172 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRL 172 (1255)
T ss_pred Cchhcccccceeeecchhhhhhcch-hhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHH
Confidence 3444578999999999999999998 667788999999998 57899998 5668888888999986 889999999999
Q ss_pred chhhhcccCCcccc-----ccCcccCCCCCCcEEeecCCC-CCcccCcccccccccceecccccccCCcCCcccCCCCCC
Q 001805 604 EHVLELHLEGTAIR-----GLPISIELFSGLVLLNLRDCK-NLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESL 677 (1011)
Q Consensus 604 ~~L~~L~L~~~~i~-----~lp~si~~L~~L~~L~L~~c~-~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L 677 (1011)
.+|++|+|++|.+. ++|+ ++.|++|.+++.. -+..+|.++..|.+|..+++|. +.+..+|+.+-++.+|
T Consensus 173 ~~LqtL~Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 173 SMLQTLKLSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNL 247 (1255)
T ss_pred hhhhhhhcCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhh
Confidence 99999999998654 4564 6788999998743 4567999999999999999996 6788999999999999
Q ss_pred cEEEcCCCCC-CCCCCCCCCCCcccccccCCCCCcccCCC-CCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCC
Q 001805 678 EVLELSGCKG-PPVSSSWYLPFPISLKRSCSDPTALRLPS-LSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSK 755 (1011)
Q Consensus 678 ~~L~l~~~~~-~~~~~~~~l~~L~~L~~~~~~l~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~ 755 (1011)
+.|+||+|.+ ++....+...+|++|+++.|.++. +|+ +..++.|+.|.+.+|.+.-+.+|..|+.+..|+.+..++
T Consensus 248 rrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~--LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 248 RRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV--LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred heeccCcCceeeeeccHHHHhhhhhhccccchhcc--chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 9999999999 777778888999999988888765 454 788999999999999998889999999999999999999
Q ss_pred CCCeecCccccCCCCCCEEEEcCCcCccccCC---CCCCccEEeecCCCcccccccchh
Q 001805 756 NSFVTAPASINRLFNLEELELEDCKRLQSMPQ---LPPNIKEVGVNGCASLEKLSDALK 811 (1011)
Q Consensus 756 n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---lp~~L~~L~l~~c~~L~~l~~~~~ 811 (1011)
|.++-+|.++..+.+|+.|.|++|. |-.+|+ +.+-|+.|++...++|-.-|.+..
T Consensus 326 N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 326 NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred cccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 9999999999999999999998754 566775 458899999999999987765543
No 9
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.81 E-value=6.2e-21 Score=184.83 Aligned_cols=134 Identities=35% Similarity=0.593 Sum_probs=116.9
Q ss_pred EEEccccCcCccchHHHHHHHHHhC--CCeEEecCCcCCCCCcchHHHHHHHHhcceEEEEecCCcccCcchHHHHHHHH
Q 001805 21 VFLSFRGVDTRKNFTDHLYTALDQK--GIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTWCLDELVHIL 98 (1011)
Q Consensus 21 vfis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 98 (1011)
|||||++.|++..|+++|..+|++. |+++|++++|+.+|..+.+++.++|++|+++|+|+|++|++|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999445689999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC-CceEEEEEeeccCCccc-cccchHHHHHHHHHHHhhhc--HHHHHHHHHHHH
Q 001805 99 ECKNKNH-QQMVYPIFYDVEPTDVR-KQSGILEAVFARHEEILAQN--KEKVQKWRDTLK 154 (1011)
Q Consensus 99 ~~~~~~~-~~~v~pvf~~v~p~~vr-~~~g~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 154 (1011)
++....+ .+.|+||||+|.+++++ .+.+.+...+.......... ......|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998754 58999999999999999 79999998887776544433 467889998764
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.80 E-value=4e-19 Score=228.74 Aligned_cols=251 Identities=24% Similarity=0.377 Sum_probs=193.9
Q ss_pred cccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcc
Q 001805 525 PEIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNME 604 (1011)
Q Consensus 525 ~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~ 604 (1011)
|..| ...+|+.|++.++.+..+|. .+..+++|+.|+|++|+.++.+|. +..+.+|++|+|++|..+..+|..+++++
T Consensus 605 P~~f-~~~~L~~L~L~~s~l~~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 605 PSNF-RPENLVKLQMQGSKLEKLWD-GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CCcC-CccCCcEEECcCcccccccc-ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC
Confidence 3444 35778888888888777776 446678888888888777777774 66677777788888887888888888888
Q ss_pred hhhhcccCCc-cccccCcccCCCCCCcEEeecCCCCCcccCc--------------------cc----------------
Q 001805 605 HVLELHLEGT-AIRGLPISIELFSGLVLLNLRDCKNLLSLPC--------------------TI---------------- 647 (1011)
Q Consensus 605 ~L~~L~L~~~-~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~--------------------~i---------------- 647 (1011)
+|+.|++++| .+..+|..+ ++++|+.|++++|..+..+|. .+
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSE 760 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchh
Confidence 8888888774 566677765 677777777777765544432 11
Q ss_pred --------------ccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCC--CCCCCCCCCCCccccc-ccCCCCC
Q 001805 648 --------------NGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKG--PPVSSSWYLPFPISLK-RSCSDPT 710 (1011)
Q Consensus 648 --------------~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~--~~~~~~~~l~~L~~L~-~~~~~l~ 710 (1011)
...++|+.|++++|..+..+|..++++++|+.|++++|.. .+|..+ .+++|+.|. .+|+.+.
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~ 839 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence 0124688888888888899999999999999999999865 555554 788999999 5565553
Q ss_pred cccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCC-CCeecCccccCCCCCCEEEEcCCcCccccC
Q 001805 711 ALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKN-SFVTAPASINRLFNLEELELEDCKRLQSMP 786 (1011)
Q Consensus 711 ~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 786 (1011)
. +|. ...+|+.|+|++|.+.. +|..+..+++|+.|+|++| ++..+|..+..+++|+.|++++|..|..++
T Consensus 840 ~--~p~--~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 840 T--FPD--ISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred c--ccc--cccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 3 222 23689999999999865 9999999999999999996 788999999999999999999999998654
No 11
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.79 E-value=4.8e-19 Score=172.15 Aligned_cols=137 Identities=41% Similarity=0.669 Sum_probs=114.9
Q ss_pred cccEEEcccc-CcCccchHHHHHHHHHhCCCeEEecCCcCCCCCcchHHHHHHHHhcceEEEEecCCcccCcchHHHHHH
Q 001805 18 KYDVFLSFRG-VDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTWCLDELVH 96 (1011)
Q Consensus 18 ~~dvfis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~ 96 (1011)
+|||||||++ ++.++.|+.+|...|...|+.+|.|+. ...|.. ..+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~-~~~~~~-~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDF-EPGGGD-LEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCc-ccccch-HHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 5999999999 566689999999999999999999984 333333 3399999999999999999999999999999999
Q ss_pred HHHHHhhCCCceEEEEEeeccCCccccccchHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 001805 97 ILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFARHEEILAQNKEKVQKWRDTLKEVA 157 (1011)
Q Consensus 97 ~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~a 157 (1011)
++++....++.+||||+|+..|+.+..+.+.++.++............+ ..|++++..++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 9998876444899999999999999999999999998874443333222 68998887765
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=3.4e-20 Score=202.11 Aligned_cols=253 Identities=23% Similarity=0.241 Sum_probs=127.2
Q ss_pred cCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCc-ccccCCCCCeeeeCCCCCCCcCcc-cccCcchh
Q 001805 529 GSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPR-NISALKYHPTWNLSGLLKFSNFPE-IMTNMEHV 606 (1011)
Q Consensus 529 ~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~-~~~~l~~L 606 (1011)
.-+.-||.|+++.|.+..+|...|..-.++++|+|++| .++.+-. .|.+|.+|.+|.|+.| .+..+|. .+.+|++|
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccC-cccccCHHHhhhcchh
Confidence 33445556666666665555544444455666666653 2333332 4555555555666655 3333333 44446666
Q ss_pred hhcccCCcccccc-CcccCCCCCCcEEeecCCCCCcccCc-ccccccccceecccccccCCcCCcccCCCCCCcEEEcCC
Q 001805 607 LELHLEGTAIRGL-PISIELFSGLVLLNLRDCKNLLSLPC-TINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSG 684 (1011)
Q Consensus 607 ~~L~L~~~~i~~l-p~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 684 (1011)
+.|+|..|.|+.+ ...+..|++|+.|.|..|. +..+.+ .+..|.++++|+|+.|+...--..++.+|++|+.|+++.
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 6666666655554 3335555555555555543 233322 244555555555555433332233455555555555555
Q ss_pred CCC--CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeec-
Q 001805 685 CKG--PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTA- 761 (1011)
Q Consensus 685 ~~~--~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l- 761 (1011)
|.+ -.+.+..+.++|+.|+++.|.++.....++..+..|+.|+|+.|++.. ---..+..+++|+.|+|++|.+...
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 555 223344445555555555555555554455555555556665555422 0112334455556666655554421
Q ss_pred ---CccccCCCCCCEEEEcCCcCccccC
Q 001805 762 ---PASINRLFNLEELELEDCKRLQSMP 786 (1011)
Q Consensus 762 ---p~~i~~l~~L~~L~L~~c~~L~~lp 786 (1011)
...+..|++|+.|.+.+| +++++|
T Consensus 382 EDaa~~f~gl~~LrkL~l~gN-qlk~I~ 408 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGN-QLKSIP 408 (873)
T ss_pred ecchhhhccchhhhheeecCc-eeeecc
Confidence 122344555555655553 355554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.77 E-value=3.9e-21 Score=201.04 Aligned_cols=247 Identities=30% Similarity=0.357 Sum_probs=218.8
Q ss_pred ccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcch
Q 001805 526 EIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEH 605 (1011)
Q Consensus 526 ~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~ 605 (1011)
+...++..|.+|.+++|.+..+|+ ..+.+..++.|+.+++ ++..+|..+.++..|..|+++.| .+..+|+.++.+..
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLD 138 (565)
T ss_pred HhhhcccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhh
Confidence 345577889999999999999998 6788899999999994 68889998999988888999987 67889999999999
Q ss_pred hhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCC
Q 001805 606 VLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGC 685 (1011)
Q Consensus 606 L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~ 685 (1011)
|..|+..+|++..+|.+++.+.+|..|++.+|+ ++.+|...-+++.|++|+... +.++.+|+.++.|.+|+.|++..|
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc
Confidence 999999999999999999999999999999986 666766666799999999877 578999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeecCccc
Q 001805 686 KGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTAPASI 765 (1011)
Q Consensus 686 ~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i 765 (1011)
.+...+.+..+..|..|..+.+.+....-..+.++++|..|||.+|++.+ .|+.+..+.+|+.|++|+|.++++|.++
T Consensus 217 ki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--~Pde~clLrsL~rLDlSNN~is~Lp~sL 294 (565)
T KOG0472|consen 217 KIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--VPDEICLLRSLERLDLSNNDISSLPYSL 294 (565)
T ss_pred ccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc--CchHHHHhhhhhhhcccCCccccCCccc
Confidence 99444488999999999988777765444447789999999999999976 9999999999999999999999999999
Q ss_pred cCCCCCCEEEEcCCc
Q 001805 766 NRLFNLEELELEDCK 780 (1011)
Q Consensus 766 ~~l~~L~~L~L~~c~ 780 (1011)
+++ .|+.|.+.+|+
T Consensus 295 gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNP 308 (565)
T ss_pred ccc-eeeehhhcCCc
Confidence 999 99999999987
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=8.4e-20 Score=191.10 Aligned_cols=248 Identities=28% Similarity=0.324 Sum_probs=215.6
Q ss_pred cceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhhcccC
Q 001805 533 CLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHLE 612 (1011)
Q Consensus 533 ~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~ 612 (1011)
-|..|.+++|.+..+.. ...++..|.+|+++++ .+..+|..++.+..++.|+.+.| ++..+|+.++.+.+|+.|+.+
T Consensus 46 ~l~~lils~N~l~~l~~-dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE-DLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchhhccH-hhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcc
Confidence 35567788888877765 5678899999999995 67888988888888888999997 788999999999999999999
Q ss_pred CccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCC-CCCC
Q 001805 613 GTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKG-PPVS 691 (1011)
Q Consensus 613 ~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~-~~~~ 691 (1011)
.|.+.++|++|+.+..|..|+..+| ++.++|.+++++.+|..|++.+ +.+..+|+..-+++.|++|+...|-. .+|.
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLDCNSNLLETLPP 200 (565)
T ss_pred ccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence 9999999999999999999999886 4889999999999999999999 56777777777799999999998888 8999
Q ss_pred CCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccC-CccCCcEEECCCCCCeecCccccCCCC
Q 001805 692 SSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIG-NLWSLEELYLSKNSFVTAPASINRLFN 770 (1011)
Q Consensus 692 ~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~-~l~~L~~L~L~~n~l~~lp~~i~~l~~ 770 (1011)
.++.+.+|..|++..+.+.. +|.|++|..|+.|.++.|.+.. +|...+ ++++|..|+|..|++++.|..+..+.+
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdNklke~Pde~clLrs 276 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRS 276 (565)
T ss_pred hhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeeccccccccCchHHHHhhh
Confidence 99999999999977777654 6789999999999999998854 777765 899999999999999999999999999
Q ss_pred CCEEEEcCCcCccccCCCCCCcc
Q 001805 771 LEELELEDCKRLQSMPQLPPNIK 793 (1011)
Q Consensus 771 L~~L~L~~c~~L~~lp~lp~~L~ 793 (1011)
|++||+++|. +..+|++|-
T Consensus 277 L~rLDlSNN~----is~Lp~sLg 295 (565)
T KOG0472|consen 277 LERLDLSNND----ISSLPYSLG 295 (565)
T ss_pred hhhhcccCCc----cccCCcccc
Confidence 9999999974 344454443
No 15
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=3.1e-18 Score=187.06 Aligned_cols=256 Identities=22% Similarity=0.190 Sum_probs=210.3
Q ss_pred cccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCc-ccccCCCCCeeeeCCCCCCCcC-cccccC
Q 001805 525 PEIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPR-NISALKYHPTWNLSGLLKFSNF-PEIMTN 602 (1011)
Q Consensus 525 ~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~L~~~~~l~~l-p~~~~~ 602 (1011)
...|..-.+++.|++++|.++.+....|..+.+|.+|.|+.| .+..+|. .|.+|+.|+.|+|..| .+... --.+.+
T Consensus 166 ~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqg 243 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQG 243 (873)
T ss_pred CCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcC
Confidence 456777779999999999999998888999999999999984 6888887 7888999999999987 34333 345788
Q ss_pred cchhhhcccCCccccccCcc-cCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEE
Q 001805 603 MEHVLELHLEGTAIRGLPIS-IELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLE 681 (1011)
Q Consensus 603 l~~L~~L~L~~~~i~~lp~s-i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~ 681 (1011)
|++|+.|.|..|.|..+.+. +-.+.++++|+|..|.....--.++.+|++|+.|++|.|..-..-++.....++|++|+
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 99999999999999998775 56789999999999874433445688999999999999876666677788899999999
Q ss_pred cCCCCC-CC-CCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCC--CCCCcccCCccCCcEEECCCCC
Q 001805 682 LSGCKG-PP-VSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGE--GAIPNDIGNLWSLEELYLSKNS 757 (1011)
Q Consensus 682 l~~~~~-~~-~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~--~~~p~~l~~l~~L~~L~L~~n~ 757 (1011)
|+.|.+ .+ +.++..+..|+.|.++.|.+....-..+.++++|+.|||+.|.++- +.-...+..+++|+.|.|.||+
T Consensus 324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred ccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 999999 44 4566678889999988888776655568889999999999998641 1123346679999999999999
Q ss_pred CeecC-ccccCCCCCCEEEEcCCcCc
Q 001805 758 FVTAP-ASINRLFNLEELELEDCKRL 782 (1011)
Q Consensus 758 l~~lp-~~i~~l~~L~~L~L~~c~~L 782 (1011)
+..+| ..+..|..|+.|+|.+|...
T Consensus 404 lk~I~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 404 LKSIPKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred eeecchhhhccCcccceecCCCCcce
Confidence 99998 46889999999999997643
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-18 Score=198.82 Aligned_cols=168 Identities=26% Similarity=0.288 Sum_probs=123.4
Q ss_pred hhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCC
Q 001805 605 HVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSG 684 (1011)
Q Consensus 605 ~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 684 (1011)
+|++++++.+.++.+|.+++.+.+|+.|++.+|. +..+|..+..+++|+.|.+.. +.++.+|+..+.+++|+.|+|..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehh
Confidence 5677777777777778778888888888887765 577888888888888888877 45788888888999999999988
Q ss_pred CCC-CCCCCCC--------------------------CCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCC
Q 001805 685 CKG-PPVSSSW--------------------------YLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGA 737 (1011)
Q Consensus 685 ~~~-~~~~~~~--------------------------~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ 737 (1011)
|.+ ..|.... ..+.|+.|.+..|.++....|.+.++.+|+.|+|++|.+..
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~-- 397 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS-- 397 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc--
Confidence 877 4443221 12233445555566666777888889999999999998854
Q ss_pred CCcc-cCCccCCcEEECCCCCCeecCccccCCCCCCEEEE
Q 001805 738 IPND-IGNLWSLEELYLSKNSFVTAPASINRLFNLEELEL 776 (1011)
Q Consensus 738 ~p~~-l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L 776 (1011)
+|+. +.++..|+.|+||||.++.+|.++.++..|++|..
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 7754 56788889999999988887766554444444433
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.6e-14 Score=172.76 Aligned_cols=132 Identities=24% Similarity=0.343 Sum_probs=72.4
Q ss_pred cceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhhcccC
Q 001805 533 CLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHLE 612 (1011)
Q Consensus 533 ~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~ 612 (1011)
+|+.|.+.+|.++.+|.+ +++|++|++++| .+..+|..+. +|+.|+|++| .+..+|... .+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~lp~---sL~~L~Ls~N-~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVLPP---GLLELSIFSN-PLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCccc---ccceeeccCC-chhhhhhch---hhcCEEECc
Confidence 566666666666666642 456666666664 4555554332 3344666665 344455432 345566666
Q ss_pred CccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCC
Q 001805 613 GTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKG 687 (1011)
Q Consensus 613 ~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 687 (1011)
+|.++.+|.. +++|+.|+|++|. +..+|.. ..+|+.|++++|. +..+|.. ..+|+.|++++|.+
T Consensus 291 ~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l---p~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N~L 354 (788)
T PRK15387 291 GNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDNQL 354 (788)
T ss_pred CCcccccccc---ccccceeECCCCc-cccCCCC---cccccccccccCc-ccccccc---ccccceEecCCCcc
Confidence 6666666642 3556666666653 4455542 2345556666543 3445532 23566666666665
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=4.4e-15 Score=178.89 Aligned_cols=138 Identities=20% Similarity=0.308 Sum_probs=95.4
Q ss_pred cceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhhcccC
Q 001805 533 CLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHLE 612 (1011)
Q Consensus 533 ~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~ 612 (1011)
+...|+++++.++.+|. ...++|+.|+|++| .+..+|..+. .+|++|+|++| .+..+|..+. .+|+.|+|+
T Consensus 179 ~~~~L~L~~~~LtsLP~---~Ip~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTTIPA---CIPEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCcCCc---ccccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 45678888888888876 12457888888875 5677776443 36777888877 4666776543 368888888
Q ss_pred CccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCC
Q 001805 613 GTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKG 687 (1011)
Q Consensus 613 ~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~ 687 (1011)
+|.+..+|.++. ++|+.|++++|+ +..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++++|.+
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQSNSL 316 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccch--hhHHHHHhcCCcc
Confidence 888888877654 578888887664 667776553 47888888875 4556665443 3677777777766
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=2.6e-14 Score=170.97 Aligned_cols=221 Identities=24% Similarity=0.213 Sum_probs=172.6
Q ss_pred CCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhhc
Q 001805 530 SMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLEL 609 (1011)
Q Consensus 530 ~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L 609 (1011)
..++|++|++++|.++.+|.+ .++|+.|++++| .+..+|..+. .|+.|+|++| .+..+|.. +++|++|
T Consensus 240 lp~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~lp~---~L~~L~Ls~N-~Lt~LP~~---p~~L~~L 307 (788)
T PRK15387 240 LPPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPALPS---GLCKLWIFGN-QLTSLPVL---PPGLQEL 307 (788)
T ss_pred CCCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhchh---hcCEEECcCC-cccccccc---cccccee
Confidence 357899999999999999863 478999999986 4777876444 4555999998 56777763 4679999
Q ss_pred ccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCC-C
Q 001805 610 HLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKG-P 688 (1011)
Q Consensus 610 ~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~-~ 688 (1011)
+|++|.+..+|... .+|+.|++++|. +..+|.. ..+|+.|+|++| .+..+|.. ..+|+.|++++|.+ .
T Consensus 308 dLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N~L~~ 376 (788)
T PRK15387 308 SVSDNQLASLPALP---SELCKLWAYNNQ-LTSLPTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNNRLTS 376 (788)
T ss_pred ECCCCccccCCCCc---ccccccccccCc-ccccccc---ccccceEecCCC-ccCCCCCC---Ccccceehhhcccccc
Confidence 99999999988733 467888999875 6778852 358999999985 56678864 35688899999988 5
Q ss_pred CCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeecCccccCC
Q 001805 689 PVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTAPASINRL 768 (1011)
Q Consensus 689 ~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l 768 (1011)
+|.. ..+|+.|+++.|.+.. +|.. .++|+.|++++|.+.. +|.. +.+|+.|+|++|+++.+|.++.++
T Consensus 377 LP~l---~~~L~~LdLs~N~Lt~--LP~l--~s~L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~~L 444 (788)
T PRK15387 377 LPAL---PSGLKELIVSGNRLTS--LPVL--PSELKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLIHL 444 (788)
T ss_pred Cccc---ccccceEEecCCcccC--CCCc--ccCCCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHhhc
Confidence 5432 3568888877777764 3332 3579999999999864 7753 457889999999999999999999
Q ss_pred CCCCEEEEcCCcCcccc
Q 001805 769 FNLEELELEDCKRLQSM 785 (1011)
Q Consensus 769 ~~L~~L~L~~c~~L~~l 785 (1011)
++|+.|+|++|+.-...
T Consensus 445 ~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 445 SSETTVNLEGNPLSERT 461 (788)
T ss_pred cCCCeEECCCCCCCchH
Confidence 99999999999865443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=6.2e-15 Score=177.64 Aligned_cols=222 Identities=24% Similarity=0.310 Sum_probs=154.3
Q ss_pred CcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhhccc
Q 001805 532 KCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHL 611 (1011)
Q Consensus 532 ~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L 611 (1011)
.+|+.|++++|.++.+|.. ..++|++|++++| .+..+|..+. ..|+.|+|++| .+..+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~---l~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN---LQGNIKTLYANSN-QLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCcCChh---hccCCCEEECCCC-ccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEEC
Confidence 4789999999999999872 3468999999986 5788887543 36777999998 4667887664 47999999
Q ss_pred CCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCC-CCC
Q 001805 612 EGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKG-PPV 690 (1011)
Q Consensus 612 ~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~-~~~ 690 (1011)
++|.+..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|.+ .+|
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP 341 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNS-LTALPETLP--PGLKTLEAGENALTSLP 341 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCc-cccCCcccc--ccceeccccCCccccCC
Confidence 9999999998764 589999999985 778887653 589999999864 556776543 6899999999887 555
Q ss_pred CCCCCCCCcccccccCCCCCcccCCC-CCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeecCcccc---
Q 001805 691 SSSWYLPFPISLKRSCSDPTALRLPS-LSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTAPASIN--- 766 (1011)
Q Consensus 691 ~~~~~l~~L~~L~~~~~~l~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~--- 766 (1011)
..+ .++|+.|+++.+.+.. +|. + .++|+.|+|++|++.. +|..+. .+|+.|++++|++..+|.++.
T Consensus 342 ~~l--~~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~Lt~--LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~ 411 (754)
T PRK15370 342 ASL--PPELQVLDVSKNQITV--LPETL--PPTITTLDVSRNALTN--LPENLP--AALQIMQASRNNLVRLPESLPHFR 411 (754)
T ss_pred hhh--cCcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcCCC--CCHhHH--HHHHHHhhccCCcccCchhHHHHh
Confidence 433 2455555555444432 121 1 2356666666666543 554432 256666666666665554332
Q ss_pred -CCCCCCEEEEcCCc
Q 001805 767 -RLFNLEELELEDCK 780 (1011)
Q Consensus 767 -~l~~L~~L~L~~c~ 780 (1011)
.++++..|+|.+|+
T Consensus 412 ~~~~~l~~L~L~~Np 426 (754)
T PRK15370 412 GEGPQPTRIIVEYNP 426 (754)
T ss_pred hcCCCccEEEeeCCC
Confidence 23555666666655
No 21
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.52 E-value=5.3e-15 Score=134.82 Aligned_cols=87 Identities=33% Similarity=0.565 Sum_probs=76.2
Q ss_pred EEEccccCcCccchHHHHHHHHHhCCCeEEecCCcCCCCCcchHHHHHHHHhcceEEEEecCCcccCcchHHHHHHHHHH
Q 001805 21 VFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTWCLDELVHILEC 100 (1011)
Q Consensus 21 vfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~ 100 (1011)
|||||+++| +.|+++|.+.|++.|+++|+|. ++.+|+.+.+.+.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 899999999 7899999999999999999997 999999999999999999999999999999999999999999833
Q ss_pred HhhCCCceEEEEEee
Q 001805 101 KNKNHQQMVYPIFYD 115 (1011)
Q Consensus 101 ~~~~~~~~v~pvf~~ 115 (1011)
.+ +.|+||..+
T Consensus 77 ---~~-~~iipv~~~ 87 (102)
T PF13676_consen 77 ---RG-KPIIPVRLD 87 (102)
T ss_dssp ---TS-ESEEEEECS
T ss_pred ---CC-CEEEEEEEC
Confidence 45 689999943
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=6.9e-16 Score=143.84 Aligned_cols=175 Identities=29% Similarity=0.473 Sum_probs=129.1
Q ss_pred cCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEE
Q 001805 601 TNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVL 680 (1011)
Q Consensus 601 ~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 680 (1011)
-+|.+...|.|++|.+..+|+.|..|.+|+.|++.+|. ++.+|.+|+.|++|+.|++.- +.+..+|.++|.++-|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhh
Confidence 35667777778888888888888888888888887764 677787888888888887764 5667778888887777777
Q ss_pred EcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCC-CCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCe
Q 001805 681 ELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPS-LSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFV 759 (1011)
Q Consensus 681 ~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~-l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 759 (1011)
|+..|.+ ....+|. +..+..|+.|.|++|.+. .+|..++.+++|+.|.+..|.+-
T Consensus 108 dltynnl----------------------~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 108 DLTYNNL----------------------NENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hcccccc----------------------ccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh
Confidence 7776554 1111222 444566777788888763 48999999999999999999999
Q ss_pred ecCccccCCCCCCEEEEcCCcCccccCCCCCCccEEeecCCCcccc
Q 001805 760 TAPASINRLFNLEELELEDCKRLQSMPQLPPNIKEVGVNGCASLEK 805 (1011)
Q Consensus 760 ~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~ 805 (1011)
++|..++.++.|++|.+.+|. |+ .+||.|-.|++.+......
T Consensus 164 ~lpkeig~lt~lrelhiqgnr-l~---vlppel~~l~l~~~k~v~r 205 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNR-LT---VLPPELANLDLVGNKQVMR 205 (264)
T ss_pred hCcHHHHHHHHHHHHhcccce-ee---ecChhhhhhhhhhhHHHHh
Confidence 999999999999999999865 33 4566666666665544433
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.49 E-value=2.2e-12 Score=165.47 Aligned_cols=296 Identities=15% Similarity=0.160 Sum_probs=185.6
Q ss_pred cccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHH
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
+|.....+|-|..-++.+.+ ....+++.|.|++|.||||++..+.+.. +.++|+. +. ....+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~--~~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LD--ESDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cC--cccCCHHHHHH
Confidence 45556788888866666542 2357899999999999999999988642 3577875 21 12234444445
Q ss_pred HHHHHHhCCCCC---Cc---------cccccchHHHHhhhc--CCcEEEEEccCCCHH------HHHHHhcCCCCCCCCc
Q 001805 267 QLLSQLLKLPNN---GI---------WNVYDGINIIGSRLH--HKKVLLLIDDVVDIK------QLECLAGKREWFGPGS 326 (1011)
Q Consensus 267 ~ll~~l~~~~~~---~~---------~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs 326 (1011)
.++..+...... .. .+.......+...+. .++++|||||+...+ .+..+.... .++.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCe
Confidence 555554211110 00 111111222222232 679999999996642 344444432 5677
Q ss_pred eEEEEeCCchhhh--cc-CcCcEEEcC----CCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHHH
Q 001805 327 RIIITSRDKHLLM--TH-GVDEVYKLR----ELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSF 399 (1011)
Q Consensus 327 ~IIiTTR~~~~~~--~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~~ 399 (1011)
++|||||...-.. .. ......++. +|+.+|+.++|....... -..+.+.++.+.++|+|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 8999999853211 11 112345666 999999999997654221 12456778999999999999998877
Q ss_pred hcCCChHHHHHHHHHHhcCChhHHHHHHHHh-hcCCchhhHHHHhhhccccCCCCHHHHHHHHhhCCCCcccchhhcccc
Q 001805 400 LYGKTTKEWQSAVKRLKRDSENEILDILQIS-FDGLKETEKEIFLDIACFHRGENRDYVTKILDYCDFDPVIGIRVLIDK 478 (1011)
Q Consensus 400 L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-y~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~ 478 (1011)
+...... .......+...+...+.+.+... ++.||++.+++++.+|+++ .++.+.+..+.+. .+....++.|.+.
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~ 304 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQ 304 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHC
Confidence 7543210 01112222222234566654444 8899999999999999986 6666666655542 2346678899999
Q ss_pred ccEEE-ec--CCeEeehHHHHHHHHHHHhhc
Q 001805 479 SLIEV-LS--NNQLWMHDFLREMGQQIVKRQ 506 (1011)
Q Consensus 479 sLi~~-~~--~~~~~mHdlv~~~~~~i~~~e 506 (1011)
+++.. .. ...|++|++++++.+.....+
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 98653 22 237899999999998877443
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.48 E-value=2.6e-15 Score=173.37 Aligned_cols=262 Identities=24% Similarity=0.314 Sum_probs=201.8
Q ss_pred CCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhhcc
Q 001805 531 MKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELH 610 (1011)
Q Consensus 531 ~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 610 (1011)
-.+|+.|..+.|++..+-. .....+|+++++++ +.+..+|.++..+.+|+.|....| .+..+|..+..+.+|+.|.
T Consensus 218 g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~ 293 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDV--HPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLS 293 (1081)
T ss_pred CcchheeeeccCcceeecc--ccccccceeeecch-hhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHH
Confidence 4567777878887764332 23456899999999 468899999999999999999987 5588999999999999999
Q ss_pred cCCccccccCcccCCCCCCcEEeecCCCCCcccCccccc-cc-ccceecccccccCCcCCcc-cCCCCCCcEEEcCCCCC
Q 001805 611 LEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTING-LK-SLKKLYLSGCSKLKNVPEN-LGKVESLEVLELSGCKG 687 (1011)
Q Consensus 611 L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~-l~-~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~ 687 (1011)
+..|.++.+|+..+.++.|++|+|..|. +.++|..+.. +. +|..|+.+. ..+..+|.. =..+..|+.|.+.+|.+
T Consensus 294 ~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 294 AAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcc
Confidence 9999999999999999999999999875 7888864321 11 255555553 345555521 12345677788888777
Q ss_pred --CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeecCccc
Q 001805 688 --PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTAPASI 765 (1011)
Q Consensus 688 --~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i 765 (1011)
.....+...++|+.|+++.|.+....-..+.++..|+.|+||+|.+.. +|+.+..++.|+.|...+|.+...| .+
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~ 448 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-EL 448 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hh
Confidence 555566677888888887777766554557888899999999999876 8899999999999999999999999 78
Q ss_pred cCCCCCCEEEEcCCcCccc--cC-CCC-CCccEEeecCCCc
Q 001805 766 NRLFNLEELELEDCKRLQS--MP-QLP-PNIKEVGVNGCAS 802 (1011)
Q Consensus 766 ~~l~~L~~L~L~~c~~L~~--lp-~lp-~~L~~L~l~~c~~ 802 (1011)
.+++.|+.+||+.|. |+. +| .+| |+|++|+++|.+.
T Consensus 449 ~~l~qL~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhcCcceEEecccch-hhhhhhhhhCCCcccceeeccCCcc
Confidence 899999999998754 332 33 466 8999999998774
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=1.3e-15 Score=142.00 Aligned_cols=158 Identities=28% Similarity=0.466 Sum_probs=118.0
Q ss_pred cCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCCCCCCCCCCCCCcccc
Q 001805 623 IELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKGPPVSSSWYLPFPISL 702 (1011)
Q Consensus 623 i~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 702 (1011)
+.++.++..|.|++|+ +..+|..|..|.+|+.|++++ +.++.+|..+..+++|+.|+++-|.+
T Consensus 29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl--------------- 91 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRL--------------- 91 (264)
T ss_pred ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhh---------------
Confidence 3445566666677665 566666677777777777765 45666676666666666666654433
Q ss_pred cccCCCCCcccCC-CCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeecCccccCCCCCCEEEEcCCcC
Q 001805 703 KRSCSDPTALRLP-SLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTAPASINRLFNLEELELEDCKR 781 (1011)
Q Consensus 703 ~~~~~~l~~~~l~-~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~ 781 (1011)
. .+| .++.++.|+.|||.+|++.+..+|..+..++.|+-|+|++|.|+.+|..++++++|+.|.+.+|..
T Consensus 92 -------~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 92 -------N--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred -------h--cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch
Confidence 1 122 278889999999999999999999999999999999999999999999999999999999999765
Q ss_pred ccccCC-C--CCCccEEeecCCCccccccc
Q 001805 782 LQSMPQ-L--PPNIKEVGVNGCASLEKLSD 808 (1011)
Q Consensus 782 L~~lp~-l--p~~L~~L~l~~c~~L~~l~~ 808 (1011)
+ ++|. + ...|++|++.+. .|..+|.
T Consensus 163 l-~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 4 4542 1 156788888875 4666654
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=9.4e-14 Score=146.25 Aligned_cols=253 Identities=23% Similarity=0.235 Sum_probs=171.5
Q ss_pred eeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcc-cccCcchhhhcccCC
Q 001805 535 SDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPE-IMTNMEHVLELHLEG 613 (1011)
Q Consensus 535 r~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~-~~~~l~~L~~L~L~~ 613 (1011)
..+.++.|.++++|+..|+.+++||.|||++|..-..-|+.|..|..|..|-+-++.++..+|. .+++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4568889999999998999999999999998654444566888888888888888778888876 678899999999988
Q ss_pred ccccccCc-ccCCCCCCcEEeecCCCCCcccCc-ccccccccceecccccccC------------CcCCcccCCCCCCcE
Q 001805 614 TAIRGLPI-SIELFSGLVLLNLRDCKNLLSLPC-TINGLKSLKKLYLSGCSKL------------KNVPENLGKVESLEV 679 (1011)
Q Consensus 614 ~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~~L~~L~l~~c~~l------------~~lp~~l~~l~~L~~ 679 (1011)
|.+.-++. .+..|++|..|.+.+|. +..++. ++..+.+++++.+..+..+ ...|...+......-
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 88777543 46778888888888875 666776 6778888888888776522 111222222222222
Q ss_pred EEcCCCCCCCCCCCCCCCCccccc--ccCCCCCcccCCC--CCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCC
Q 001805 680 LELSGCKGPPVSSSWYLPFPISLK--RSCSDPTALRLPS--LSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSK 755 (1011)
Q Consensus 680 L~l~~~~~~~~~~~~~l~~L~~L~--~~~~~l~~~~l~~--l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~ 755 (1011)
..+.+..+....+-.+...++.+- ...........|. +..+++|++|+|++|.+. +.-+.+|..+..|+.|.|.+
T Consensus 229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCc
Confidence 222222220000111111122221 1111111122232 788999999999999984 45567888999999999999
Q ss_pred CCCeecC-ccccCCCCCCEEEEcCCcCccccCCCC
Q 001805 756 NSFVTAP-ASINRLFNLEELELEDCKRLQSMPQLP 789 (1011)
Q Consensus 756 n~l~~lp-~~i~~l~~L~~L~L~~c~~L~~lp~lp 789 (1011)
|++..+. ..+..++.|+.|+|.+|....-.|...
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 9998764 457889999999999987555555433
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.23 E-value=7.9e-10 Score=127.43 Aligned_cols=285 Identities=16% Similarity=0.160 Sum_probs=165.1
Q ss_pred ccccccccccchhHHHHHHHhhcC--CCCceEEEEEecCCchhHHHHHHHHHHhhccCC--ceeEeeehhhhhccCChHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKG--SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE--GSSFLANVREISKEGGLIS 263 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~l~~ 263 (1011)
...++.|+||+.++++|...+... ....+.+.|+|++|+|||++++.+++.+....+ ..+++. .........
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~ 101 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYA 101 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHH
Confidence 345678999999999999988532 233456889999999999999999998765542 233333 222334566
Q ss_pred HHHHHHHHHhCCCC-CCccccccchHHHHhhhc--CCcEEEEEccCCCHH------HHHHHhcCCCCCCCCce--EEEEe
Q 001805 264 LQKQLLSQLLKLPN-NGIWNVYDGINIIGSRLH--HKKVLLLIDDVVDIK------QLECLAGKREWFGPGSR--IIITS 332 (1011)
Q Consensus 264 l~~~ll~~l~~~~~-~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--IIiTT 332 (1011)
+..+++.++.+... ....+..+....+.+.+. +++.+||||+++... .+..+...... ..+++ +|.++
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~ 180 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGIS 180 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEE
Confidence 77788877644221 111223344455555554 456899999997753 34444433221 12333 56666
Q ss_pred CCchhhhcc-------CcCcEEEcCCCCHHHHHHHHHHHhhcc---CCCCc-cHHHHHHHHHHHhCCCchHHHHHHHHh-
Q 001805 333 RDKHLLMTH-------GVDEVYKLRELHDDNALRLFCKKAFKT---HQPKK-GYEQLSEWVTKYSGGLPLALKVLGSFL- 400 (1011)
Q Consensus 333 R~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~~~~-~~~~l~~~i~~~~~GlPLal~~~~~~L- 400 (1011)
.+..+.... -....+.+++++.++..+++..++-.. ....+ ..+.+++......|..+.|+.++-.+.
T Consensus 181 ~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~ 260 (394)
T PRK00411 181 SDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL 260 (394)
T ss_pred CCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 655432211 112467899999999999998876321 12222 222233333333455777777664322
Q ss_pred ----cC---CChHHHHHHHHHHhcCChhHHHHHHHHhhcCCchhhHHHHhhhccccC----CCCHHHHH----HHHhhCC
Q 001805 401 ----YG---KTTKEWQSAVKRLKRDSENEILDILQISFDGLKETEKEIFLDIACFHR----GENRDYVT----KILDYCD 465 (1011)
Q Consensus 401 ----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~~~~l~----~~~~~~~ 465 (1011)
.+ -+.+....+++... .....-.+..|+.++|.++..++...+ ......+. .+....+
T Consensus 261 ~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 261 IAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 14455555555441 233455688999999998887774432 22222222 1222223
Q ss_pred CCc------ccchhhccccccEEEe
Q 001805 466 FDP------VIGIRVLIDKSLIEVL 484 (1011)
Q Consensus 466 ~~~------~~~l~~L~~~sLi~~~ 484 (1011)
..+ ...+..|.+.|+|...
T Consensus 334 ~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 322 2347788889998864
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.23 E-value=1.8e-13 Score=153.18 Aligned_cols=238 Identities=21% Similarity=0.179 Sum_probs=139.0
Q ss_pred ccccCCCcceeEEecCCCCCC-----CCCCCccCCCCCeeecccCCCCc------cccCcccccCCCCCeeeeCCCCCCC
Q 001805 526 EIVGSMKCLSDLLLDGTDIKE-----LPILPFELLSGLVQLNVEGCNKL------ERLPRNISALKYHPTWNLSGLLKFS 594 (1011)
Q Consensus 526 ~~~~~~~~Lr~L~l~~~~~~~-----lp~~~~~~l~~L~~L~L~~~~~l------~~lp~~l~~L~~L~~L~L~~~~~l~ 594 (1011)
..+..+.+|+.|.++++.+.. ++. .+...++|+.|+++++..- ..++..+..+..|+.|++++|....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 345556667788888777632 222 2345566777777765322 1222345556677778887775554
Q ss_pred cCcccccCcch---hhhcccCCccccc-----cCcccCCC-CCCcEEeecCCCCCc----ccCcccccccccceeccccc
Q 001805 595 NFPEIMTNMEH---VLELHLEGTAIRG-----LPISIELF-SGLVLLNLRDCKNLL----SLPCTINGLKSLKKLYLSGC 661 (1011)
Q Consensus 595 ~lp~~~~~l~~---L~~L~L~~~~i~~-----lp~si~~L-~~L~~L~L~~c~~l~----~lp~~i~~l~~L~~L~l~~c 661 (1011)
..+..+..+.+ |++|++++|.+.. +..++..+ ++|+.|++++|.... .++..+..+++|++|++++|
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n 175 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN 175 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC
Confidence 45544444444 7778887776652 33345555 777888887776331 23344555667777777776
Q ss_pred ccCC----cCCcccCCCCCCcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCC
Q 001805 662 SKLK----NVPENLGKVESLEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGA 737 (1011)
Q Consensus 662 ~~l~----~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~ 737 (1011)
.... .++..+..+++|+.|++++|.+.... . ......+..+++|+.|++++|.+.+..
T Consensus 176 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~-~-----------------~~l~~~~~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 176 GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG-A-----------------SALAETLASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred CCchHHHHHHHHHHHhCCCCCEEeccCCccChHH-H-----------------HHHHHHhcccCCCCEEecCCCcCchHH
Confidence 5432 23344455567777777776541000 0 000112445677888888888764311
Q ss_pred CCcccC----CccCCcEEECCCCCCe-----ecCccccCCCCCCEEEEcCCcCc
Q 001805 738 IPNDIG----NLWSLEELYLSKNSFV-----TAPASINRLFNLEELELEDCKRL 782 (1011)
Q Consensus 738 ~p~~l~----~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~L 782 (1011)
+..... ..+.|+.|++++|.++ .+...+..+++|++|++++|..-
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 111111 2367888888888774 33455666678888888887643
No 29
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.18 E-value=3.8e-10 Score=139.30 Aligned_cols=308 Identities=17% Similarity=0.227 Sum_probs=182.0
Q ss_pred cccccchhHHHHHHHhhcCC-CCceEEEEEecCCchhHHHHHHHHHHhhccCC---ce------------eEeeehhhhh
Q 001805 193 NLVGIDSHLKNLRLLMDKGS-NDVRMIGICGMGGIGKTTLARVVYDLTSHKFE---GS------------SFLANVREIS 256 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~------------~~~~~~~~~~ 256 (1011)
.++||+.+++.|...+.... +...++.+.|..|||||+|+++|...+.+++. .. .|+..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 37899999999999887432 34579999999999999999999987665411 11 1111222211
Q ss_pred c------cCChHHHHHHHHHHHhCCCCCCc---------------------cccccc-----hHHHHhhh-cCCcEEEEE
Q 001805 257 K------EGGLISLQKQLLSQLLKLPNNGI---------------------WNVYDG-----INIIGSRL-HHKKVLLLI 303 (1011)
Q Consensus 257 ~------~~~l~~l~~~ll~~l~~~~~~~~---------------------~~~~~~-----~~~l~~~L-~~k~~LlVl 303 (1011)
. .........+++..+........ ...... ...+.... +.+|.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1 00111112222222111100000 000000 11122222 456999999
Q ss_pred ccCCCHHH-----HHHHhcCCC--CC-CCCceEEEEeCCc--hhhhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCc
Q 001805 304 DDVVDIKQ-----LECLAGKRE--WF-GPGSRIIITSRDK--HLLMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKK 373 (1011)
Q Consensus 304 Ddv~~~~~-----~~~l~~~~~--~~-~~gs~IIiTTR~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 373 (1011)
||+...+. ++.++.... .+ ....-.+.|.+.. .+.........+.|.||+..+...+...........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 99965443 344443321 00 0111222333322 122223344689999999999999998776432222
Q ss_pred cHHHHHHHHHHHhCCCchHHHHHHHHhcCC-------ChHHHHHHHHHHhcCC-hhHHHHHHHHhhcCCchhhHHHHhhh
Q 001805 374 GYEQLSEWVTKYSGGLPLALKVLGSFLYGK-------TTKEWQSAVKRLKRDS-ENEILDILQISFDGLKETEKEIFLDI 445 (1011)
Q Consensus 374 ~~~~l~~~i~~~~~GlPLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~fl~l 445 (1011)
..+....|+++..|+|+.++.+-..+... +...|..-...+.... .+.+.+.+..-.+.||...|+++...
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34678889999999999999998888653 3344555544444322 23356678889999999999999999
Q ss_pred ccccCCCCHHHHHHHHhhCCCCcccchhhccccccEEEec--------CC---eEeehHHHHHHHHHHH
Q 001805 446 ACFHRGENRDYVTKILDYCDFDPVIGIRVLIDKSLIEVLS--------NN---QLWMHDFLREMGQQIV 503 (1011)
Q Consensus 446 a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~---~~~mHdlv~~~~~~i~ 503 (1011)
||+.+.++.+.+..++.........++......++|.... .. +-..|+++|+.+....
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 9999999999888888754333333333333444444321 11 1257888888886654
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=2.3e-12 Score=141.86 Aligned_cols=208 Identities=26% Similarity=0.343 Sum_probs=114.2
Q ss_pred eeeCCCCCCCcCcccccCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccC
Q 001805 585 WNLSGLLKFSNFPEIMTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKL 664 (1011)
Q Consensus 585 L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l 664 (1011)
.+|+.| .+.++|..+..+..|+.|.|+.|.+..+|..+.+|..|.+|+|+.|. +..+|..++.|+ |+.|.+++ +++
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl 155 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSN-NKL 155 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEec-Ccc
Confidence 344443 44445555555555555555555555555555555555555555543 445555555444 55555554 445
Q ss_pred CcCCcccCCCCCCcEEEcCCCCC-CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccC
Q 001805 665 KNVPENLGKVESLEVLELSGCKG-PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIG 743 (1011)
Q Consensus 665 ~~lp~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~ 743 (1011)
+.+|+.++.+..|..|+.+.|.+ .+|+.++.+.+|+.|....+.+... ++.+. .-.|..||+|+|++.. +|-.|.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-p~El~-~LpLi~lDfScNkis~--iPv~fr 231 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-PEELC-SLPLIRLDFSCNKISY--LPVDFR 231 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-CHHHh-CCceeeeecccCceee--cchhhh
Confidence 55555555555555555555555 4444444444444444333332211 11133 2257788888888765 888888
Q ss_pred CccCCcEEECCCCCCeecCccc---cCCCCCCEEEEcCCcCccccCCCCCCccEEeecCCC
Q 001805 744 NLWSLEELYLSKNSFVTAPASI---NRLFNLEELELEDCKRLQSMPQLPPNIKEVGVNGCA 801 (1011)
Q Consensus 744 ~l~~L~~L~L~~n~l~~lp~~i---~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l~~c~ 801 (1011)
.|..|++|-|.+|.+++-|..| +...-.++|+..-|. -..-+.++..++-.....|.
T Consensus 232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q-~~~a~~~~t~~RP~~~~~c~ 291 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ-SGGALDLYTTLRPRHFSSCH 291 (722)
T ss_pred hhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc-ccCCcccccccCCcccCCcc
Confidence 8888888888888888877655 344556778887774 22223333333333344443
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=4.7e-13 Score=141.05 Aligned_cols=255 Identities=20% Similarity=0.186 Sum_probs=172.4
Q ss_pred ccccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCc-ccccCCCCCeeeeCCCCCCCcCcccccC
Q 001805 524 FPEIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPR-NISALKYHPTWNLSGLLKFSNFPEIMTN 602 (1011)
Q Consensus 524 ~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~L~~~~~l~~lp~~~~~ 602 (1011)
.+++|+.+++||.|+++.|.+..+-+..|+.+..|..|-+-+++.++.+|+ .|..|..|+.|.+.-|...-...+.+..
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~d 162 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRD 162 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH
Confidence 378999999999999999999999988999999999999988889999998 8889999998998887555566778889
Q ss_pred cchhhhcccCCccccccCc-ccCCCCCCcEEeecCCCCC------------cccCcccccccccceecccccccCCcCCc
Q 001805 603 MEHVLELHLEGTAIRGLPI-SIELFSGLVLLNLRDCKNL------------LSLPCTINGLKSLKKLYLSGCSKLKNVPE 669 (1011)
Q Consensus 603 l~~L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l------------~~lp~~i~~l~~L~~L~l~~c~~l~~lp~ 669 (1011)
|++|..|.+..|.+..++. ++..+..++.+.+..|... ...|...+......-..+.. .....++.
T Consensus 163 L~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~-~Ri~q~~a 241 (498)
T KOG4237|consen 163 LPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYY-KRINQEDA 241 (498)
T ss_pred hhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHH-HHhcccch
Confidence 9999999999999999988 7888999999988876621 12222222222222222211 11111110
Q ss_pred c--cCCCCCCcEEEcCCCCC---CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 001805 670 N--LGKVESLEVLELSGCKG---PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGN 744 (1011)
Q Consensus 670 ~--l~~l~~L~~L~l~~~~~---~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~ 744 (1011)
. ...++++..--.+.+.. .....+..+++|+.|+++.|.++...-..|.++..|+.|.|..|++.. .--..+.+
T Consensus 242 ~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ 320 (498)
T KOG4237|consen 242 RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQG 320 (498)
T ss_pred hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhc
Confidence 0 00000010000111111 001113334444444444444555445567888889999999888732 22345678
Q ss_pred ccCCcEEECCCCCCeec-CccccCCCCCCEEEEcCCc
Q 001805 745 LWSLEELYLSKNSFVTA-PASINRLFNLEELELEDCK 780 (1011)
Q Consensus 745 l~~L~~L~L~~n~l~~l-p~~i~~l~~L~~L~L~~c~ 780 (1011)
++.|+.|+|.+|+++.+ |..+..+..|..|+|-.|+
T Consensus 321 ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 321 LSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 89999999999999865 7778888888888887765
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=4.8e-09 Score=119.62 Aligned_cols=287 Identities=16% Similarity=0.116 Sum_probs=160.2
Q ss_pred ccccccccccchhHHHHHHHhhc--CCCCceEEEEEecCCchhHHHHHHHHHHhhccCC------ceeEeeehhhhhccC
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDK--GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE------GSSFLANVREISKEG 259 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~ 259 (1011)
...++.++||+.++++|...+.. .......+.|+|++|+|||++++++++.+....+ ..+++. .....
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~ 86 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILD 86 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCC
Confidence 34557899999999999998863 1233467899999999999999999987654322 233433 22233
Q ss_pred ChHHHHHHHHHHHhC--CCCC-CccccccchHHHHhhh--cCCcEEEEEccCCCHH-----HHHHHhcCC--CCC-CCCc
Q 001805 260 GLISLQKQLLSQLLK--LPNN-GIWNVYDGINIIGSRL--HHKKVLLLIDDVVDIK-----QLECLAGKR--EWF-GPGS 326 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~--~~~~-~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~-----~~~~l~~~~--~~~-~~gs 326 (1011)
....+...++.++.+ .... ...+..+....+.+.+ .+++++||||+++... .+..+.... ... +...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 456677777777642 1111 1111222334444444 3567899999998761 133333221 111 1233
Q ss_pred eEEEEeCCchhhhcc-------CcCcEEEcCCCCHHHHHHHHHHHhh---ccCCCCccHHHHHHHHHHHhCCCch-HHHH
Q 001805 327 RIIITSRDKHLLMTH-------GVDEVYKLRELHDDNALRLFCKKAF---KTHQPKKGYEQLSEWVTKYSGGLPL-ALKV 395 (1011)
Q Consensus 327 ~IIiTTR~~~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 395 (1011)
.+|.+|......... -....+.+++++.+|..+++..++- ......++..+...+++....|.|- |+..
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 455555544321111 1124678999999999999988763 1222223333445556777778874 3333
Q ss_pred HHHHh-----cC---CChHHHHHHHHHHhcCChhHHHHHHHHhhcCCchhhHHHHhhhccccC-C---CCHHHHHH----
Q 001805 396 LGSFL-----YG---KTTKEWQSAVKRLKRDSENEILDILQISFDGLKETEKEIFLDIACFHR-G---ENRDYVTK---- 459 (1011)
Q Consensus 396 ~~~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~---~~~~~l~~---- 459 (1011)
+-.+. .+ -+.+..+.+.+.+. .....-++.+||.+++.++..++..-+ + .....+..
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 22211 11 23444454444431 233445678999999888877664322 1 11222211
Q ss_pred HHhhCCCCc------ccchhhccccccEEEec
Q 001805 460 ILDYCDFDP------VIGIRVLIDKSLIEVLS 485 (1011)
Q Consensus 460 ~~~~~~~~~------~~~l~~L~~~sLi~~~~ 485 (1011)
+....+..+ ...+..|...|+|+...
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 222222222 23477788889988753
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=3e-10 Score=125.99 Aligned_cols=274 Identities=14% Similarity=0.115 Sum_probs=151.2
Q ss_pred ccccccchhHHHHHHHhhcC---CCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKG---SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQL 268 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~l 268 (1011)
..|||++..+++|..++... ....+.+.++|++|+|||+||+++++.+...+. ....... .....+ ...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~---~~~~~l-~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL---EKPGDL-AAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh---cCchhH-HHH
Confidence 57999999999998888631 233556889999999999999999997754321 1100000 011111 111
Q ss_pred HHHHhCCCCCCcccc----ccchHHHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchhhhcc--C
Q 001805 269 LSQLLKLPNNGIWNV----YDGINIIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLLMTH--G 342 (1011)
Q Consensus 269 l~~l~~~~~~~~~~~----~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~--~ 342 (1011)
+..+....-.-.++. ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+.... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 111100000000000 00112223333333444444443333222111 12344556677765443221 1
Q ss_pred cCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHH-HHHhcCCh-
Q 001805 343 VDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFLYGKTTKEWQSAV-KRLKRDSE- 420 (1011)
Q Consensus 343 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l-~~l~~~~~- 420 (1011)
....+.+++++.+|..+++.+.+..... .-.++....|++.|+|.|-.+..++..+ |..+. ..-.....
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRD 220 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHH
Confidence 2346799999999999999888754322 2235677889999999997665554432 11110 00000111
Q ss_pred --hHHHHHHHHhhcCCchhhHHHHh-hhccccCC-CCHHHHHHHHhhCCCCcccchh-hccccccEEEecCCe
Q 001805 421 --NEILDILQISFDGLKETEKEIFL-DIACFHRG-ENRDYVTKILDYCDFDPVIGIR-VLIDKSLIEVLSNNQ 488 (1011)
Q Consensus 421 --~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~ 488 (1011)
......+...|.+|++.++..+. .++.+..+ ...+.+...++.........++ .|++++||.....++
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~ 293 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR 293 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence 12223356678899999888777 44555432 5567777777766666666677 699999997654443
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=1.1e-12 Score=146.97 Aligned_cols=230 Identities=21% Similarity=0.144 Sum_probs=136.7
Q ss_pred cCCCCCeeecccCCCC----ccccCcccccCCCCCeeeeCCCCCC------CcCcccccCcchhhhcccCCccccc-cCc
Q 001805 553 ELLSGLVQLNVEGCNK----LERLPRNISALKYHPTWNLSGLLKF------SNFPEIMTNMEHVLELHLEGTAIRG-LPI 621 (1011)
Q Consensus 553 ~~l~~L~~L~L~~~~~----l~~lp~~l~~L~~L~~L~L~~~~~l------~~lp~~~~~l~~L~~L~L~~~~i~~-lp~ 621 (1011)
..+..|+.|++++|.. ...++..+...+.|++|+++++... ..++..+.++++|++|+++++.+.. .+.
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 3455688888887653 1234445556666777887776432 1233455566777777777776653 233
Q ss_pred ccCCC---CCCcEEeecCCCCCc----ccCcccccc-cccceecccccccCC----cCCcccCCCCCCcEEEcCCCCCCC
Q 001805 622 SIELF---SGLVLLNLRDCKNLL----SLPCTINGL-KSLKKLYLSGCSKLK----NVPENLGKVESLEVLELSGCKGPP 689 (1011)
Q Consensus 622 si~~L---~~L~~L~L~~c~~l~----~lp~~i~~l-~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~~~~ 689 (1011)
.+..+ ++|+.|++++|.... .+...+..+ ++|+.|++++|.... .++..+..+.+|++|++++|.+..
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 33333 337777777765321 222334445 677777777765431 233445556667777776665411
Q ss_pred CCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCC---CCCcccCCccCCcEEECCCCCCeec-----
Q 001805 690 VSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEG---AIPNDIGNLWSLEELYLSKNSFVTA----- 761 (1011)
Q Consensus 690 ~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~---~~p~~l~~l~~L~~L~L~~n~l~~l----- 761 (1011)
.. + ......+..+++|+.|++++|.+.+. .++..+..+++|+.|++++|.+...
T Consensus 180 ~~-------~-----------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 180 AG-------I-----------RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HH-------H-----------HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 00 0 00011234457999999999987532 2345567789999999999988731
Q ss_pred Cccc-cCCCCCCEEEEcCCcCc--------cccCCCCCCccEEeecCCC
Q 001805 762 PASI-NRLFNLEELELEDCKRL--------QSMPQLPPNIKEVGVNGCA 801 (1011)
Q Consensus 762 p~~i-~~l~~L~~L~L~~c~~L--------~~lp~lp~~L~~L~l~~c~ 801 (1011)
...+ ...+.|+.|++++|... ..++.+ ++|+.++++++.
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~ 289 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNK 289 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCC
Confidence 1111 13589999999999643 223333 678888887753
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.16 E-value=3.3e-10 Score=120.48 Aligned_cols=197 Identities=20% Similarity=0.225 Sum_probs=100.8
Q ss_pred ccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHH------HHH
Q 001805 194 LVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISL------QKQ 267 (1011)
Q Consensus 194 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l------~~~ 267 (1011)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.....-...+|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999753 34689999999999999999999987544334455432211110 001111 111
Q ss_pred HHHHH---hCCCCC------CccccccchHHHHhhhc--CCcEEEEEccCCCHH-------H----HHHHhcCCCCCCCC
Q 001805 268 LLSQL---LKLPNN------GIWNVYDGINIIGSRLH--HKKVLLLIDDVVDIK-------Q----LECLAGKREWFGPG 325 (1011)
Q Consensus 268 ll~~l---~~~~~~------~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~-------~----~~~l~~~~~~~~~g 325 (1011)
+...+ ...... ...........+.+.+. +++++||+||++... . +..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 11111 111100 11122233334444443 345999999996555 1 2222222211 233
Q ss_pred ceEEEEeCCchhhhc--------cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHH
Q 001805 326 SRIIITSRDKHLLMT--------HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKV 395 (1011)
Q Consensus 326 s~IIiTTR~~~~~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 395 (1011)
..+|+++....+... .+....+.|++|+.+++.+++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344455444433322 2333458999999999999998865332 11112355668999999999998864
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.15 E-value=2e-10 Score=128.25 Aligned_cols=261 Identities=18% Similarity=0.161 Sum_probs=152.5
Q ss_pred ccccccccccchhHHHHHHHhhc---CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDK---GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l 264 (1011)
|....+|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. +.. ...... ...
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~----~~~ 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEK----PGD 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccC----hHH
Confidence 33457899999999999888763 2234567889999999999999999998754321 111 000000 011
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH--HHHHHhcCCC-------------------CCC
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK--QLECLAGKRE-------------------WFG 323 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~ 323 (1011)
...++..+ ++.-+|++|+++... ..+.+..... ...
T Consensus 93 l~~~l~~l-----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 93 LAAILTNL-----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred HHHHHHhc-----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 11222211 123355566654321 1111110000 002
Q ss_pred CCceEEEEeCCchhhhcc--CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 001805 324 PGSRIIITSRDKHLLMTH--GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFLY 401 (1011)
Q Consensus 324 ~gs~IIiTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~~L~ 401 (1011)
+.+-|..|+|...+.... .....+++++++.++..+++.+.+...... -.++.+..|++.|+|.|-.+..+...+.
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~ 227 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR 227 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 234556677755432221 123468999999999999999887543322 2356788999999999965554443321
Q ss_pred CCChHHHHHHHHHHhcCC---hhHHHHHHHHhhcCCchhhHHHHh-hhccccCC-CCHHHHHHHHhhCCCCcccchh-hc
Q 001805 402 GKTTKEWQSAVKRLKRDS---ENEILDILQISFDGLKETEKEIFL-DIACFHRG-ENRDYVTKILDYCDFDPVIGIR-VL 475 (1011)
Q Consensus 402 ~~~~~~w~~~l~~l~~~~---~~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L 475 (1011)
.|.... .-.... -....+.+...+.+|++..+..+. .+..|..+ ...+.+...+.......+..++ .|
T Consensus 228 -----~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~L 301 (328)
T PRK00080 228 -----DFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYL 301 (328)
T ss_pred -----HHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHH
Confidence 111110 000111 123334556778899999988886 55555543 4667787777766666666777 89
Q ss_pred cccccEEEecCC
Q 001805 476 IDKSLIEVLSNN 487 (1011)
Q Consensus 476 ~~~sLi~~~~~~ 487 (1011)
++.+||+....+
T Consensus 302 i~~~li~~~~~g 313 (328)
T PRK00080 302 IQQGFIQRTPRG 313 (328)
T ss_pred HHcCCcccCCch
Confidence 999999755433
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=5.6e-11 Score=145.90 Aligned_cols=275 Identities=23% Similarity=0.229 Sum_probs=152.6
Q ss_pred CCcceeEEecCCC--CCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhh
Q 001805 531 MKCLSDLLLDGTD--IKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLE 608 (1011)
Q Consensus 531 ~~~Lr~L~l~~~~--~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~ 608 (1011)
.++|++|.+.++. +..++...|..++.|++|||++|..+..+|..+++|-+|++|+|+++ .+..+|..+++++.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhhe
Confidence 3478899888886 66666645778999999999999999999999999999999999985 78899999999999999
Q ss_pred cccCCccccc-cCcccCCCCCCcEEeecCCC-C-CcccCcccccccccceecccccccCCcCCcccCCCCCCc----EEE
Q 001805 609 LHLEGTAIRG-LPISIELFSGLVLLNLRDCK-N-LLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLE----VLE 681 (1011)
Q Consensus 609 L~L~~~~i~~-lp~si~~L~~L~~L~L~~c~-~-l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~----~L~ 681 (1011)
|++..+.-.. +|.-+..|++|++|.+..-. . -..+-..+.+|.+|+.|....++. .+-+.+..+..|. .+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 9999876444 44444559999999887643 0 011112234455555555443322 1111112222222 222
Q ss_pred cCCCCC-CCCCCCCCCCCccccc-ccCCCCCcc--cCCC--CC-CCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECC
Q 001805 682 LSGCKG-PPVSSSWYLPFPISLK-RSCSDPTAL--RLPS--LS-GLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLS 754 (1011)
Q Consensus 682 l~~~~~-~~~~~~~~l~~L~~L~-~~~~~l~~~--~l~~--l~-~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~ 754 (1011)
+.++.. ..+.++..+.+|+.|. ..|...... ...+ .. .+++|..+.+.+|.... .+.+..-.++|+.|.+.
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r--~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR--DLTWLLFAPHLTSLSLV 778 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc--ccchhhccCcccEEEEe
Confidence 222222 3344444455555555 222221110 0000 00 12344444444443322 33333445666666666
Q ss_pred CCCCeec-CccccCCC----------CCCEE----EEcCCcCccccCCCCCCccEEeecCCCcccccccch
Q 001805 755 KNSFVTA-PASINRLF----------NLEEL----ELEDCKRLQSMPQLPPNIKEVGVNGCASLEKLSDAL 810 (1011)
Q Consensus 755 ~n~l~~l-p~~i~~l~----------~L~~L----~L~~c~~L~~lp~lp~~L~~L~l~~c~~L~~l~~~~ 810 (1011)
.+...+- .+....+. ++..+ ++.+.+.+..+|--.+.|+.+.+..|+++..+|...
T Consensus 779 ~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 779 SCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred cccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence 6643322 11111112 22222 222222232333222557888888888888887653
No 38
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=1.1e-08 Score=119.13 Aligned_cols=297 Identities=17% Similarity=0.162 Sum_probs=185.5
Q ss_pred cccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHH
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
+|..+.+.|-|..-++.|.+. .+.|.+.|..++|.|||||+.+++. ....-..+.|+..- ....+......
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld---e~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD---ESDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC---CccCCHHHHHH
Confidence 445567788887666655432 4679999999999999999999988 45555667787621 23455666666
Q ss_pred HHHHHHhCCCCCCc------------cccccchHHHHhhhc--CCcEEEEEccCCCH------HHHHHHhcCCCCCCCCc
Q 001805 267 QLLSQLLKLPNNGI------------WNVYDGINIIGSRLH--HKKVLLLIDDVVDI------KQLECLAGKREWFGPGS 326 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~------------~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs 326 (1011)
.++..+........ .+.......+...+. .++..+||||..-. ..++.+.... .++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCe
Confidence 66666542221111 111122233333232 56899999997432 2356665554 5788
Q ss_pred eEEEEeCCchhhh---ccCcCcEEEcC----CCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHHH
Q 001805 327 RIIITSRDKHLLM---THGVDEVYKLR----ELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSF 399 (1011)
Q Consensus 327 ~IIiTTR~~~~~~---~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~~ 399 (1011)
..|||||...-+. -.-.+...+++ .|+.+|+.++|..... . +-.+.-++.+.++.+|.+-|+..++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~---l--~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS---L--PLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC---C--CCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 9999999874322 11123344554 5899999999977641 1 122445778999999999999999877
Q ss_pred hcC-CChHHHHHHHHHHhcCChhHHHH-HHHHhhcCCchhhHHHHhhhccccCCCCHHHHHHHHhhCCCCcccchhhccc
Q 001805 400 LYG-KTTKEWQSAVKRLKRDSENEILD-ILQISFDGLKETEKEIFLDIACFHRGENRDYVTKILDYCDFDPVIGIRVLID 477 (1011)
Q Consensus 400 L~~-~~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~ 477 (1011)
+++ .+.+.- ...+... ..-+.+ ...--++.||++.|..++.+|++.. ++-+....+.+.. +...-++.|.+
T Consensus 237 ~~~~~~~~q~---~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~--ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQS---LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEE--NGQAMLEELER 309 (894)
T ss_pred ccCCCcHHHH---hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCC--cHHHHHHHHHh
Confidence 773 232222 2222211 122222 2233468999999999999998853 2222333333211 22233788899
Q ss_pred cccEEE--e-cCCeEeehHHHHHHHHHHHhhcC
Q 001805 478 KSLIEV--L-SNNQLWMHDFLREMGQQIVKRQC 507 (1011)
Q Consensus 478 ~sLi~~--~-~~~~~~mHdlv~~~~~~i~~~e~ 507 (1011)
++|+-+ + +++.|+.|.++.++-+...+.+-
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 998653 2 25689999999999988776543
No 39
>PF05729 NACHT: NACHT domain
Probab=98.97 E-value=4.1e-09 Score=105.50 Aligned_cols=141 Identities=24% Similarity=0.344 Sum_probs=85.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCC-----ceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHH
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFE-----GSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINII 290 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l 290 (1011)
|++.|.|.+|+||||+++.+++++..... ...++...+..........+...+...... .. ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~---~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPE-SI---APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhcc-ch---hhhHH---HH
Confidence 58999999999999999999987765542 233333444433332222333333333211 11 11111 11
Q ss_pred H-hhhcCCcEEEEEccCCCHHH-------------HHHHhcCCCCCCCCceEEEEeCCchh---hhccCcCcEEEcCCCC
Q 001805 291 G-SRLHHKKVLLLIDDVVDIKQ-------------LECLAGKREWFGPGSRIIITSRDKHL---LMTHGVDEVYKLRELH 353 (1011)
Q Consensus 291 ~-~~L~~k~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~gs~IIiTTR~~~~---~~~~~~~~~~~l~~L~ 353 (1011)
. .....++++||||++++... +..+... ...++.++|||+|.... .........+++.+|+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 1 12257899999999965433 2222222 12568999999998765 2223344689999999
Q ss_pred HHHHHHHHHHHh
Q 001805 354 DDNALRLFCKKA 365 (1011)
Q Consensus 354 ~~ea~~Lf~~~a 365 (1011)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999986653
No 40
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.95 E-value=4.8e-08 Score=106.33 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=105.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh-
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR- 293 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~- 293 (1011)
.+++.|+|++|+||||+++.+++.....--..+++. .......++...++..+ +.+... .+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~l-G~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADF-GLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHc-CCCCCC-CCHHHHHHHHHHHH
Confidence 458999999999999999999987653211112221 12234456666666653 332211 1111112222222
Q ss_pred ----hcCCcEEEEEccCCCHH--HHHHHh---cCCCCCCCCceEEEEeCCchh--hhc-------cCcCcEEEcCCCCHH
Q 001805 294 ----LHHKKVLLLIDDVVDIK--QLECLA---GKREWFGPGSRIIITSRDKHL--LMT-------HGVDEVYKLRELHDD 355 (1011)
Q Consensus 294 ----L~~k~~LlVlDdv~~~~--~~~~l~---~~~~~~~~gs~IIiTTR~~~~--~~~-------~~~~~~~~l~~L~~~ 355 (1011)
..+++.+||+||++... .++.+. ...........|++|....-. +.. ......+.+++|+.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25778999999998753 344433 221111223345566543211 000 012346789999999
Q ss_pred HHHHHHHHHhhccCC--CCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 001805 356 NALRLFCKKAFKTHQ--PKKGYEQLSEWVTKYSGGLPLALKVLGSFL 400 (1011)
Q Consensus 356 ea~~Lf~~~a~~~~~--~~~~~~~l~~~i~~~~~GlPLal~~~~~~L 400 (1011)
|..+++...+..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999998877643221 112345788899999999999999888775
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.93 E-value=7.2e-11 Score=130.25 Aligned_cols=208 Identities=27% Similarity=0.328 Sum_probs=170.2
Q ss_pred eeeCCCCCCCcCcccc--cCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccc
Q 001805 585 WNLSGLLKFSNFPEIM--TNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCS 662 (1011)
Q Consensus 585 L~L~~~~~l~~lp~~~--~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~ 662 (1011)
|.|++ ..++.+|..- -.+..-...||+.|.+.++|.....+..|+.|.|..|. +..+|..++++..|..|+|+. +
T Consensus 55 l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-N 131 (722)
T KOG0532|consen 55 LLLSG-RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSS-N 131 (722)
T ss_pred ccccc-chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-c
Confidence 44443 3555555422 23445567899999999999999999999999998865 789999999999999999998 5
Q ss_pred cCCcCCcccCCCCCCcEEEcCCCCC-CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcc
Q 001805 663 KLKNVPENLGKVESLEVLELSGCKG-PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPND 741 (1011)
Q Consensus 663 ~l~~lp~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 741 (1011)
.+..+|..+..|+ |+.|-+++|.+ .+|..++.+..|..|+.+++++... ++.++++.+|+.|++..|++.. +|..
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~sl-psql~~l~slr~l~vrRn~l~~--lp~E 207 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSL-PSQLGYLTSLRDLNVRRNHLED--LPEE 207 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhc-hHHhhhHHHHHHHHHhhhhhhh--CCHH
Confidence 6788999998887 99999999999 8999999999999999877776542 2338899999999999999866 8998
Q ss_pred cCCccCCcEEECCCCCCeecCccccCCCCCCEEEEcCCcCccccCC------CCCCccEEeecCCC
Q 001805 742 IGNLWSLEELYLSKNSFVTAPASINRLFNLEELELEDCKRLQSMPQ------LPPNIKEVGVNGCA 801 (1011)
Q Consensus 742 l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~~L~~L~l~~c~ 801 (1011)
+..| .|..||++.|++..+|-++.++..|++|-|.+|+ |++-|. .-.-.++|++.-|.
T Consensus 208 l~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 208 LCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 8855 5899999999999999999999999999999887 555441 22446788888884
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=6.1e-10 Score=113.45 Aligned_cols=135 Identities=30% Similarity=0.327 Sum_probs=91.7
Q ss_pred cCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEE
Q 001805 601 TNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVL 680 (1011)
Q Consensus 601 ~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L 680 (1011)
...+.|.+|||++|.|+.+..++.-+++++.|++++|. +..+- .+..|++|+.|+||+| .+.++-..-.++-++++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 34567999999999999999999999999999999986 33433 3677888999999985 344444444456667777
Q ss_pred EcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCee
Q 001805 681 ELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVT 760 (1011)
Q Consensus 681 ~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~ 760 (1011)
.+.+|.++.. ..+..+-+|..||+++|++..-.--..++++|.|+.|.|.+|.+..
T Consensus 358 ~La~N~iE~L------------------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 358 KLAQNKIETL------------------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ehhhhhHhhh------------------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777654211 1234455667777777766432333456666666666666666655
Q ss_pred cC
Q 001805 761 AP 762 (1011)
Q Consensus 761 lp 762 (1011)
+|
T Consensus 414 ~v 415 (490)
T KOG1259|consen 414 SV 415 (490)
T ss_pred cc
Confidence 54
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.86 E-value=2.2e-09 Score=123.92 Aligned_cols=181 Identities=31% Similarity=0.463 Sum_probs=120.0
Q ss_pred cccCCCCCeeeeCCCCCCCcCcccccCcc-hhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccc
Q 001805 576 ISALKYHPTWNLSGLLKFSNFPEIMTNME-HVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLK 654 (1011)
Q Consensus 576 l~~L~~L~~L~L~~~~~l~~lp~~~~~l~-~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~ 654 (1011)
+..+..++.|++.++ .+..+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhh
Confidence 333444555666654 5555666666663 6777777777777776666777777777777764 566666555667777
Q ss_pred eecccccccCCcCCcccCCCCCCcEEEcCCCCC-CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCC
Q 001805 655 KLYLSGCSKLKNVPENLGKVESLEVLELSGCKG-PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDL 733 (1011)
Q Consensus 655 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l 733 (1011)
.|++++ +.+..+|..++.+..|++|.+++|.. ..+. .+.++.++..|.+.+|.+
T Consensus 190 ~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~------------------------~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 190 NLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLS------------------------SLSNLKNLSGLELSNNKL 244 (394)
T ss_pred heeccC-CccccCchhhhhhhhhhhhhhcCCcceecch------------------------hhhhcccccccccCCcee
Confidence 777776 45666666555555667776666632 2222 244555666666666665
Q ss_pred CCCCCCcccCCccCCcEEECCCCCCeecCccccCCCCCCEEEEcCCcCccccC
Q 001805 734 GEGAIPNDIGNLWSLEELYLSKNSFVTAPASINRLFNLEELELEDCKRLQSMP 786 (1011)
Q Consensus 734 ~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 786 (1011)
.. ++..++.+++|+.|++++|.++.++. +..+.+|+.|+++++.....+|
T Consensus 245 ~~--~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 245 ED--LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee--ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 43 47778888889999999998888876 8888889999988876555444
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=7.4e-10 Score=118.99 Aligned_cols=208 Identities=20% Similarity=0.202 Sum_probs=120.0
Q ss_pred cCCCcceeEEecCCCCCCCCC-CCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhh
Q 001805 529 GSMKCLSDLLLDGTDIKELPI-LPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVL 607 (1011)
Q Consensus 529 ~~~~~Lr~L~l~~~~~~~lp~-~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~ 607 (1011)
+++++||...+.++++...+. .-...|++++.|||++| .+. .+..+-.+...+++|+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~---------------------nw~~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFH---------------------NWFPVLKIAEQLPSLE 175 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHH---------------------hHHHHHHHHHhcccch
Confidence 345566666666666555442 12234555555555553 111 1122233445566666
Q ss_pred hcccCCccccccCcc--cCCCCCCcEEeecCCCCC-cccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCC
Q 001805 608 ELHLEGTAIRGLPIS--IELFSGLVLLNLRDCKNL-LSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSG 684 (1011)
Q Consensus 608 ~L~L~~~~i~~lp~s--i~~L~~L~~L~L~~c~~l-~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 684 (1011)
.|+|+.|.+....++ -..+++|+.|.|+.|... ..+-.....+++|+.|+|.+|+.+...-.....++.|++|+|++
T Consensus 176 ~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 176 NLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 666666665543332 235677888888888632 12222334577888888888754332222333456788888887
Q ss_pred CCC-CCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcc-----cCCccCCcEEECCCCCC
Q 001805 685 CKG-PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPND-----IGNLWSLEELYLSKNSF 758 (1011)
Q Consensus 685 ~~~-~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~-----l~~l~~L~~L~L~~n~l 758 (1011)
|.+ ..+ ..+..+.++.|..|+++.|.+.+-.+|+. ...+++|++|+++.|++
T Consensus 256 N~li~~~----------------------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 256 NNLIDFD----------------------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred Ccccccc----------------------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 765 221 12335566677777777777655555554 45678888888888888
Q ss_pred eecC--ccccCCCCCCEEEEcCCc
Q 001805 759 VTAP--ASINRLFNLEELELEDCK 780 (1011)
Q Consensus 759 ~~lp--~~i~~l~~L~~L~L~~c~ 780 (1011)
...+ ..+..+.+|+.|.+..+.
T Consensus 314 ~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 314 RDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccchhhccchhhhhhccccc
Confidence 6554 345556677777665544
No 45
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.79 E-value=8.9e-08 Score=112.47 Aligned_cols=248 Identities=15% Similarity=0.134 Sum_probs=131.8
Q ss_pred cccccccccccchhHHHHHHHhhc---CCCCceEEEEEecCCchhHHHHHHHHHHhhcc-----CC--ceeEeeehhhhh
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDK---GSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-----FE--GSSFLANVREIS 256 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~~~~~~~~~~ 256 (1011)
+...++.+.||+.|+++|...|.. +.....++.|+|++|.|||+.++.|.+++... .+ .++++. ..
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm 825 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GM 825 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CC
Confidence 334567899999999999888863 23333577899999999999999998866422 22 123443 12
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc---CCcEEEEEccCCCHH--HHHHHhcCCCCC-CCCceEEE
Q 001805 257 KEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH---HKKVLLLIDDVVDIK--QLECLAGKREWF-GPGSRIII 330 (1011)
Q Consensus 257 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~---~k~~LlVlDdv~~~~--~~~~l~~~~~~~-~~gs~IIi 330 (1011)
.......+...+..++.+..........+....+...+. +...+||||+++... .-+.|...+.|. ..+++|+|
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 223445566666666544332222222223333333331 234689999997543 112222111111 23555544
Q ss_pred --EeCCch--------hhhccCcCcEEEcCCCCHHHHHHHHHHHhhccC-C-CCccHHHHHHHHHHHhCCCchHHHHHHH
Q 001805 331 --TSRDKH--------LLMTHGVDEVYKLRELHDDNALRLFCKKAFKTH-Q-PKKGYEQLSEWVTKYSGGLPLALKVLGS 398 (1011)
Q Consensus 331 --TTR~~~--------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~-~~~~~~~l~~~i~~~~~GlPLal~~~~~ 398 (1011)
+|.+-. +...++ ...+..++++.++-.+++..++-... . .++..+-+|+.++...|..=.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 332211 111222 22466799999999999998874321 1 1222333344444444555566666544
Q ss_pred HhcC-----CChHHHHHHHHHHhcCChhHHHHHHHHhhcCCchhhHHHHhhhc
Q 001805 399 FLYG-----KTTKEWQSAVKRLKRDSENEILDILQISFDGLKETEKEIFLDIA 446 (1011)
Q Consensus 399 ~L~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la 446 (1011)
+... ...+.-..+..++.. ..+.-....||.++|-++..+.
T Consensus 985 AgEikegskVT~eHVrkAleeiE~-------srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFD-------SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHh-------hhHHHHHHcCCHHHHHHHHHHH
Confidence 4322 122333333333221 2233334678888877666444
No 46
>PRK06893 DNA replication initiation factor; Validated
Probab=98.78 E-value=1.6e-07 Score=98.92 Aligned_cols=150 Identities=15% Similarity=0.191 Sum_probs=91.8
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
.+.+.|+|++|+|||+||+++++....+...+.|+... +. .....++ .+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~-~~------~~~~~~~----------------------~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS-KS------QYFSPAV----------------------LENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH-Hh------hhhhHHH----------------------Hhhc
Confidence 46789999999999999999999876665566676521 00 0000011 1111
Q ss_pred cCCcEEEEEccCCCH---HHHH-HHhcCCCCC-CCCceEEEEeCCc----------hhhhccCcCcEEEcCCCCHHHHHH
Q 001805 295 HHKKVLLLIDDVVDI---KQLE-CLAGKREWF-GPGSRIIITSRDK----------HLLMTHGVDEVYKLRELHDDNALR 359 (1011)
Q Consensus 295 ~~k~~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gs~IIiTTR~~----------~~~~~~~~~~~~~l~~L~~~ea~~ 359 (1011)
. +.-+|||||++.. .+|+ .+...++.. ..|..+||+|.+. .+...+....+++++++++++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 1 2348999999763 2232 222211111 2355665544432 334444445688999999999999
Q ss_pred HHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 360 LFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 360 Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
++.+.+...... -.+++..-|++++.|..-++..+
T Consensus 169 iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 169 VLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHH
Confidence 999988654322 22567777888888776555444
No 47
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.77 E-value=6.7e-09 Score=112.38 Aligned_cols=279 Identities=19% Similarity=0.248 Sum_probs=180.9
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
..|.+.++|.|||||||++-.+.. +...|....++.+...+....-+... +...++..... -+.....+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~----~ag~~gl~~~~---g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPT----LAGALGLHVQP---GDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHH----HHhhccccccc---chHHHHHHHHH
Confidence 458899999999999999999999 88889988887766555433322222 11112211111 11234566777
Q ss_pred hcCCcEEEEEccCCCHHH-HHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEcCCCCHH-HHHHHHHHHhhccCC-
Q 001805 294 LHHKKVLLLIDDVVDIKQ-LECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLRELHDD-NALRLFCKKAFKTHQ- 370 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~~~-~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~- 370 (1011)
..+++.++|+||..+... -..+...+....+.-+|+.|+|.... ...+..+.++.|+.. ++.++|...+.....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccc
Confidence 888999999999866533 22222222222456678999997644 234567788888776 799998877732211
Q ss_pred --CCccHHHHHHHHHHHhCCCchHHHHHHHHhcCCChHHHHHHHHH----HhcC------ChhHHHHHHHHhhcCCchhh
Q 001805 371 --PKKGYEQLSEWVTKYSGGLPLALKVLGSFLYGKTTKEWQSAVKR----LKRD------SENEILDILQISFDGLKETE 438 (1011)
Q Consensus 371 --~~~~~~~l~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~ 438 (1011)
-.........+|.+...|.|++|..+++..+....++....++. +... ........+..||.-|..-+
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 12233556778999999999999999999887665554443332 2221 13456678999999999999
Q ss_pred HHHHhhhccccCCCCHHHHHHHHhhCCC-----CcccchhhccccccEEEec---CCeEeehHHHHHHHHHHH
Q 001805 439 KEIFLDIACFHRGENRDYVTKILDYCDF-----DPVIGIRVLIDKSLIEVLS---NNQLWMHDFLREMGQQIV 503 (1011)
Q Consensus 439 k~~fl~la~f~~~~~~~~l~~~~~~~~~-----~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~~~~i~ 503 (1011)
+..|-.++.|..+++.+........... .....+..+++++++.... .-.++.-+-.+.|+.+..
T Consensus 242 ~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 242 RALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred HHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887733332222221 1234467788899887653 224454455555555444
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.4e-09 Score=116.89 Aligned_cols=181 Identities=25% Similarity=0.232 Sum_probs=114.5
Q ss_pred cCCCCCeeeeCCCCCCCcCc--ccccCcchhhhcccCCccccc---cCcccCCCCCCcEEeecCCCCCcccCc-cccccc
Q 001805 578 ALKYHPTWNLSGLLKFSNFP--EIMTNMEHVLELHLEGTAIRG---LPISIELFSGLVLLNLRDCKNLLSLPC-TINGLK 651 (1011)
Q Consensus 578 ~L~~L~~L~L~~~~~l~~lp--~~~~~l~~L~~L~L~~~~i~~---lp~si~~L~~L~~L~L~~c~~l~~lp~-~i~~l~ 651 (1011)
+++.|+...|.+| .+...+ .....+++++.|||++|-+.. +-.-+..|++|+.|+|+.|+...-..+ .-..++
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3444444555554 333333 245667778888888776554 223356688888888888763321111 112466
Q ss_pred ccceecccccccC-CcCCcccCCCCCCcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCC
Q 001805 652 SLKKLYLSGCSKL-KNVPENLGKVESLEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSD 730 (1011)
Q Consensus 652 ~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~ 730 (1011)
+|+.|.|++|... ..+-..+..+++|+.|+|.+|.... ..-.+...++.|+.|+|++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~----------------------~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL----------------------IKATSTKILQTLQELDLSN 255 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc----------------------eecchhhhhhHHhhccccC
Confidence 7777777777643 2222334456667777776663210 0011234466899999999
Q ss_pred CCCCCCCCCcccCCccCCcEEECCCCCCeec--Ccc-----ccCCCCCCEEEEcCCcC
Q 001805 731 CDLGEGAIPNDIGNLWSLEELYLSKNSFVTA--PAS-----INRLFNLEELELEDCKR 781 (1011)
Q Consensus 731 ~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~-----i~~l~~L~~L~L~~c~~ 781 (1011)
|++.+...-...+.++.|..|+++.|.+.++ |+. ...+++|++|+++.|+-
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 9987633336678999999999999998865 544 46789999999999764
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.4e-07 Score=101.45 Aligned_cols=168 Identities=23% Similarity=0.373 Sum_probs=103.6
Q ss_pred ccccccchhH---HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHH
Q 001805 192 KNLVGIDSHL---KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQL 268 (1011)
Q Consensus 192 ~~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~l 268 (1011)
..+||-+.-+ .-|.+++.. +.+.-..+||++|+||||||+.++......|...-=+ ..++.++.+ +
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~-i 92 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLRE-I 92 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHH-H
Confidence 4556655444 234555543 4566788999999999999999998776665432111 122333222 2
Q ss_pred HHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCC--HHHHHHHhcCCCCCCCCceEEE--EeCCchhhhc---c
Q 001805 269 LSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVD--IKQLECLAGKREWFGPGSRIII--TSRDKHLLMT---H 341 (1011)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIi--TTR~~~~~~~---~ 341 (1011)
+.+ .-+.+..+++.+|++|.|.. ..|-+.|++.. ..|.-|+| ||.++...-. .
T Consensus 93 ~e~-----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 IEE-----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HHH-----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHh
Confidence 211 11223458899999999964 55677777775 45766666 7777643111 2
Q ss_pred CcCcEEEcCCCCHHHHHHHHHHHhhccCCC-----CccHHHHHHHHHHHhCCCc
Q 001805 342 GVDEVYKLRELHDDNALRLFCKKAFKTHQP-----KKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 342 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-----~~~~~~l~~~i~~~~~GlP 390 (1011)
....++++++|+.+|-.+++.+.+...... ..-.++....++..++|--
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 345799999999999999998744221111 1112445666888888754
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=2.3e-08 Score=115.35 Aligned_cols=174 Identities=34% Similarity=0.547 Sum_probs=89.5
Q ss_pred CcceeEEecCCCCCCCCCCCccCCC-CCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcccccCcchhhhcc
Q 001805 532 KCLSDLLLDGTDIKELPILPFELLS-GLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELH 610 (1011)
Q Consensus 532 ~~Lr~L~l~~~~~~~lp~~~~~~l~-~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~ 610 (1011)
+.+..|.+.++.+..+|+ ....+. +|+.|+++++ .+..+|..+..++.|+.|++++| .+..+|...+.+++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCcc-ccccchhhccccccccc-chhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence 445555555555555554 223332 5555555552 34445444455555555555554 4444444444555555555
Q ss_pred cCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCCCCCCCC
Q 001805 611 LEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKGPPV 690 (1011)
Q Consensus 611 L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~ 690 (1011)
+++|.+..+|..+..+..|++|.+++|. ....+..+.+++++..|.+.+ ..+..++..++.+.+|++|++++|.+
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i--- 267 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQI--- 267 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCC-ceeeeccchhccccccceeccccccc---
Confidence 5555555555554444555555555543 233344444555555555433 23333344455555555555555544
Q ss_pred CCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCC
Q 001805 691 SSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLG 734 (1011)
Q Consensus 691 ~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~ 734 (1011)
... +.++.+.+|+.|+++++.+.
T Consensus 268 -------------------~~i--~~~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 268 -------------------SSI--SSLGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -------------------ccc--ccccccCccCEEeccCcccc
Confidence 322 22556667778888777664
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.60 E-value=1.4e-07 Score=104.38 Aligned_cols=158 Identities=23% Similarity=0.385 Sum_probs=88.8
Q ss_pred cchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEc
Q 001805 603 MEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLEL 682 (1011)
Q Consensus 603 l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l 682 (1011)
+.+++.|++++|.++.+|. -..+|+.|.+++|.++..+|..+ .++|++|++++|..+..+|+. |+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEEe
Confidence 4556666666666666662 22468888888888888888655 367888888888777777754 555666
Q ss_pred CCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCC-CCCCeeecCCCCC-CCCCCCcccCCccCCcEEECCCCCCee
Q 001805 683 SGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGL-WSLRKLDLSDCDL-GEGAIPNDIGNLWSLEELYLSKNSFVT 760 (1011)
Q Consensus 683 ~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l-~~L~~L~Ls~~~l-~~~~~p~~l~~l~~L~~L~L~~n~l~~ 760 (1011)
+++.... +..+ ++|+.|.+.+++. ....+|. .-.++|+.|++++|....
T Consensus 120 ~~n~~~~---------------------------L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 120 KGSATDS---------------------------IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII 170 (426)
T ss_pred CCCCCcc---------------------------cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCccc
Confidence 5432200 0111 1345555533221 0101111 112567777777776555
Q ss_pred cCccccCCCCCCEEEEcCCc--Ccc-ccCCCCCCccEEeecCCCcc
Q 001805 761 APASINRLFNLEELELEDCK--RLQ-SMPQLPPNIKEVGVNGCASL 803 (1011)
Q Consensus 761 lp~~i~~l~~L~~L~L~~c~--~L~-~lp~lp~~L~~L~l~~c~~L 803 (1011)
+|..+. .+|+.|+++.|. .+. ....+|+++ .|.+.+|-.|
T Consensus 171 LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 171 LPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred Cccccc--ccCcEEEecccccccccCccccccccc-Eechhhhccc
Confidence 554433 467777776542 111 122466677 7777776443
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=3.3e-06 Score=97.33 Aligned_cols=176 Identities=21% Similarity=0.328 Sum_probs=106.0
Q ss_pred ccccccccchhHHH---HHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHH
Q 001805 190 ILKNLVGIDSHLKN---LRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
....+||.+..+.. +.+++.. +....+.++|++|+||||||+.+++.....|.. +... ..+... .+
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~-ir 78 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKD-LR 78 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHH-HH
Confidence 34679999888766 7777754 345678899999999999999999876544321 1100 111111 11
Q ss_pred HHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEE--EeCCchh--hhc
Q 001805 267 QLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIII--TSRDKHL--LMT 340 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi--TTR~~~~--~~~ 340 (1011)
+++.... .....+++.+|++|+++.. .+.+.+...+. .|..++| ||.+... ...
T Consensus 79 ~ii~~~~-----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 79 EVIEEAR-----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHHHHHH-----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHH
Confidence 2222110 0011357789999999764 45566665543 3545554 3444321 111
Q ss_pred -cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHhCCCchHHHHH
Q 001805 341 -HGVDEVYKLRELHDDNALRLFCKKAFKTHQPK-KGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 341 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
.....++.+.+++.++..+++.+.+....... .-.++..+.+++.++|.+..+..+
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 12236789999999999999987653211111 223566778999999998765443
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.56 E-value=1.4e-06 Score=92.17 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=101.7
Q ss_pred ccccc--cchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHH
Q 001805 192 KNLVG--IDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 192 ~~~vG--r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
++|++ .+..++++.+++.. ...+.+.|+|.+|+|||+||++++++.........++. ....... ...++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~~~~~ 85 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------DPEVL 85 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------HHHHH
Confidence 45653 34456777776542 34568999999999999999999987654444445543 2221110 00111
Q ss_pred HHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH---H-HHHHhcCCCC-CCCCceEEEEeCCch--------
Q 001805 270 SQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK---Q-LECLAGKREW-FGPGSRIIITSRDKH-------- 336 (1011)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR~~~-------- 336 (1011)
..+. +.-+|||||++... . .+.+...++. ...+.++|+||+...
T Consensus 86 ----------------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 86 ----------------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred ----------------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 1111 22389999997543 1 2333322111 123458889887532
Q ss_pred -hhhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 001805 337 -LLMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGS 398 (1011)
Q Consensus 337 -~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~ 398 (1011)
+.........+++++++.++...++...+-.... .-.++..+.+++.++|+|..+..+..
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 1112222357899999999999998776532221 12346667788889999987766543
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.56 E-value=2.3e-06 Score=96.47 Aligned_cols=199 Identities=17% Similarity=0.156 Sum_probs=106.9
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC-Cc-eeEeeehhhhhccCChHHHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF-EG-SSFLANVREISKEGGLISLQKQ 267 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~l~~l~~~ 267 (1011)
....++|++..++.+.+++..+ ..+.+.++|++|+||||+|+++++.+.... +. .+++. ..+..... ...+...
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~-~~~~~~~ 88 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQG-KKYLVED 88 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcc-hhhhhcC
Confidence 3467899999999999988643 344688999999999999999998765332 22 23332 21111000 0000000
Q ss_pred -HHHHHhCCC-CCCccccccchHHHHhh---h--cCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCc-hh
Q 001805 268 -LLSQLLKLP-NNGIWNVYDGINIIGSR---L--HHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDK-HL 337 (1011)
Q Consensus 268 -ll~~l~~~~-~~~~~~~~~~~~~l~~~---L--~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~ 337 (1011)
......+.. .............++.. . ...+-+||+||++... ..+.+...+......+++|+||... .+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 00000000001111111 1 1334589999997542 2333433333234567788877543 22
Q ss_pred hhcc-CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 338 LMTH-GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 338 ~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
.... .....+++.+++.++..+.+...+-..... -..+..+.++++++|.+-.+.
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2211 223568899999999999888876433222 235677788999998865543
No 55
>PTZ00202 tuzin; Provisional
Probab=98.50 E-value=8.3e-06 Score=89.61 Aligned_cols=161 Identities=16% Similarity=0.243 Sum_probs=100.3
Q ss_pred ccccccccccccchhHHHHHHHhhcCC-CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHH
Q 001805 186 IISGILKNLVGIDSHLKNLRLLMDKGS-NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 186 ~~~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l 264 (1011)
..|.....|+||+.++++|...|...+ +..+++.|.|++|+|||||++.+..... ...++.+.+ +..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHH
Confidence 567778899999999999999997433 3457999999999999999999987554 225554332 55788
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhhh-----c-CCcEEEEEc--cCCCHHH----HHHHhcCCCCCCCCceEEEEe
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSRL-----H-HKKVLLLID--DVVDIKQ----LECLAGKREWFGPGSRIIITS 332 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~-~k~~LlVlD--dv~~~~~----~~~l~~~~~~~~~gs~IIiTT 332 (1011)
++.++.++ +..... .-.++...|.+.+ . +++.+||+- +-.+... .-.|... ..-|+|++--
T Consensus 326 Lr~LL~AL-GV~p~~--~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~d----rr~ch~v~ev 398 (550)
T PTZ00202 326 LRSVVKAL-GVPNVE--ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACD----RRLCHVVIEV 398 (550)
T ss_pred HHHHHHHc-CCCCcc--cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHcc----chhheeeeee
Confidence 88888885 332211 1123333333332 2 566666663 2222221 1222222 3457777755
Q ss_pred CCchhhhc---cCcCcEEEcCCCCHHHHHHHHHH
Q 001805 333 RDKHLLMT---HGVDEVYKLRELHDDNALRLFCK 363 (1011)
Q Consensus 333 R~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 363 (1011)
--+.+-.. ...-..|-++.++.++|.++-.+
T Consensus 399 pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 399 PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred hHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 44433111 22345789999999999887543
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=8.2e-06 Score=92.26 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=108.4
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc---eeEee-ehhhh---------
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG---SSFLA-NVREI--------- 255 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~-~~~~~--------- 255 (1011)
....+++|-+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...... .|-.. ..++.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 34467899999999999888653 234678999999999999999999876421110 00000 00000
Q ss_pred ----hccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceE
Q 001805 256 ----SKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRI 328 (1011)
Q Consensus 256 ----~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~I 328 (1011)
....... ..+++... +... ..+++-++|+|+++... .++.++..+.......++
T Consensus 92 ~~~~~~~~~v~-~ir~i~~~------------------~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~f 152 (363)
T PRK14961 92 EIDAASRTKVE-EMREILDN------------------IYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKF 152 (363)
T ss_pred EecccccCCHH-HHHHHHHH------------------HhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 0000111 11111111 1000 12345689999998764 356666555544556677
Q ss_pred EEEeCCch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 329 IITSRDKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 329 IiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
|++|.+.. +... ......+++.+++.++..+.+...+-..... -.++.+..|++.++|.|-.
T Consensus 153 Il~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 153 ILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 77765442 3222 1224678999999999998887766433221 2245677799999998853
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.48 E-value=1.8e-08 Score=102.98 Aligned_cols=127 Identities=24% Similarity=0.170 Sum_probs=70.9
Q ss_pred cccccceecccccccCCcCCcccCCCCCCcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeec
Q 001805 649 GLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDL 728 (1011)
Q Consensus 649 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~L 728 (1011)
..+.|++|+||+| .+..+.+++.-++.++.|+++.|.+....++..+++|..|+++.|.+....- .-..+-+.+.|.|
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~L 359 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKL 359 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhh-hHhhhcCEeeeeh
Confidence 3455666666663 3455555555556666666666665333334444444444444333322110 0123445667777
Q ss_pred CCCCCCCCCCCcccCCccCCcEEECCCCCCeec--CccccCCCCCCEEEEcCCc
Q 001805 729 SDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTA--PASINRLFNLEELELEDCK 780 (1011)
Q Consensus 729 s~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~i~~l~~L~~L~L~~c~ 780 (1011)
+.|.+. -...++.+-+|..|++++|+++.+ -.+|++||.|+.|.|.+|+
T Consensus 360 a~N~iE---~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 360 AQNKIE---TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhHh---hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 777652 234455666777777777777655 2467777777777777766
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.47 E-value=1.1e-05 Score=95.11 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=111.0
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--CCceeEeeehhhhhccCChHHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--FEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
...+++||.+.-++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+-.. .... ..+.....+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~-----------PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQ-----------PCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCC-----------CCcccHHHH
Confidence 34578999999999999998754 234677899999999999999998865321 1000 000000001
Q ss_pred HHHHH----HhCCCCCCccccccchHHHHh---h-hcCCcEEEEEccCCCHHH--HHHHhcCCCCCCCCceEEEEeCCch
Q 001805 267 QLLSQ----LLKLPNNGIWNVYDGINIIGS---R-LHHKKVLLLIDDVVDIKQ--LECLAGKREWFGPGSRIIITSRDKH 336 (1011)
Q Consensus 267 ~ll~~----l~~~~~~~~~~~~~~~~~l~~---~-L~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~ 336 (1011)
.+... +..........+++....+.. . ..++.-++|||+++.... +..|+..+.......++|+||.+.+
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 11000 000000000000111111111 0 123455888999986543 6666655544456778888887764
Q ss_pred hhh-c-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCc-hHHHHH
Q 001805 337 LLM-T-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLP-LALKVL 396 (1011)
Q Consensus 337 ~~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~~ 396 (1011)
-.. . ......+.++.++.++..+.+.+.+-..... -..+....|++.++|.. -|+..+
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 321 1 1224678999999999999988776433222 22466677899998865 355543
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=98.45 E-value=1e-05 Score=90.06 Aligned_cols=182 Identities=14% Similarity=0.189 Sum_probs=105.5
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhh-ccCCceeEeeehhhhhccCChHHHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTS-HKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
|.....++|.+..++.|..++..+ ..+.+.++|++|+||||+|+++++.+. ..|...+.-.+ .+...+... .+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~-vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDV-VR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHH-HH
Confidence 334567899998888888887643 334577999999999999999998763 33332211111 111122222 22
Q ss_pred HHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCc-hhhhc-cC
Q 001805 267 QLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDK-HLLMT-HG 342 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~ 342 (1011)
+.+..+..... . ...++.-++|||+++... ....+.......+..+++|+++... .+... ..
T Consensus 83 ~~i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 83 NKIKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHHHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 22222110000 0 001345689999997643 3344443333335667777776543 22111 11
Q ss_pred cCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 343 VDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 343 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
....++++++++++..+.+...+-.....- ..+....+++.++|..-
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMR 195 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 235789999999999998887774433221 24567788999988764
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2.5e-06 Score=99.41 Aligned_cols=194 Identities=13% Similarity=0.111 Sum_probs=110.7
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc--cCCceeEeeeh-hhhhcc--CChHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH--KFEGSSFLANV-REISKE--GGLIS 263 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~~-~~~~~~--~~l~~ 263 (1011)
....+++|-+.-.+.|..++..+. -...+.++|++|+||||+|+.+++.+.. .++..|+.... +.+... .++..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE
Confidence 344678999998899988887532 3467799999999999999999987632 23323332210 000000 00000
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-hhhh
Q 001805 264 LQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-HLLM 339 (1011)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~ 339 (1011)
+.........++.+....+.. -..+++-++|+|+++.. ..++.+...+........+|++|... .+..
T Consensus 90 --------l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 90 --------IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred --------ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 000000000011111111111 11245668999999754 34666666555434555666655433 3322
Q ss_pred c-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHH
Q 001805 340 T-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 340 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal 393 (1011)
. ......+++.+++.++..+.+.+.+-...... .++....|++.++|.+--+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 2 12345789999999999999988774433222 2466788999999988533
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=98.44 E-value=7.6e-06 Score=96.25 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=107.0
Q ss_pred cccccccccchhHHHHHHHhhcC--CCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKG--SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
.....++|.+..+++|..++..- ....+.+.|+|++|+||||+|+++++.+. ++. +.+. .+.... .....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd~r~-~~~i~ 82 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASDQRT-ADVIE 82 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----cccccc-HHHHH
Confidence 34567999999999999988632 12267899999999999999999999763 221 1111 111111 12222
Q ss_pred HHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH------HHHHHhcCCCCCCCCceEEEEeCCch-hhh
Q 001805 267 QLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK------QLECLAGKREWFGPGSRIIITSRDKH-LLM 339 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~ 339 (1011)
+++....... .....++-+||+|+++... .+..+...+. ..+..||+|+.+.. ...
T Consensus 83 ~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 83 RVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccch
Confidence 3322211100 0011367799999997642 2444443332 23445666664432 111
Q ss_pred -c-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 340 -T-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 340 -~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
. ......+++.+++.++....+...+....... ..+....|++.++|..-.+.
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHH
Confidence 1 12345789999999999988877764433222 24677889999998765444
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.8e-05 Score=92.46 Aligned_cols=178 Identities=16% Similarity=0.149 Sum_probs=109.0
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCC---------------------cee
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE---------------------GSS 247 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---------------------~~~ 247 (1011)
.....+||.+...+.|..++..+ .-.+.+.++|+.|+||||+|+.+++.+-.... ..+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 34578999999999999998754 23478899999999999999999886532110 011
Q ss_pred EeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCC
Q 001805 248 FLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGP 324 (1011)
Q Consensus 248 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 324 (1011)
.+. .+...++..+ ++++.. +.. -..+++-++|+|+++.. .....|+..+.....
T Consensus 91 EID----AAs~~~VddI-Reli~~------------------~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 91 EID----AASRTKVEDT-RELLDN------------------VPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred Eec----ccccCCHHHH-HHHHHH------------------HhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 110 0000111111 111111 100 11345668999999765 345566655544355
Q ss_pred CceEEEEeCCchh-hhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 325 GSRIIITSRDKHL-LMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 325 gs~IIiTTR~~~~-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
+.++|++|.+..- ... ......+++.+++.++..+.+.+.+-..... -..+....|++.++|.+-.
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 6788887766432 111 1234688999999999999887776443322 2245667799999997743
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.40 E-value=3e-05 Score=86.75 Aligned_cols=181 Identities=15% Similarity=0.177 Sum_probs=105.3
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
...+++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+........++. +. .+...+...+ .+.+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~~~-~~~i 89 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGIDVI-RNKI 89 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchHHH-HHHH
Confidence 3467999999999999988643 3345799999999999999999987643221111221 00 0111111111 1111
Q ss_pred HHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-hhhhc-cCcCc
Q 001805 270 SQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-HLLMT-HGVDE 345 (1011)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~~~~ 345 (1011)
..+..... .....+-+|++|+++.. +..+.+...+......+++|+++... .+... .....
T Consensus 90 ~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 90 KEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 11111000 00123558999998754 23444444444334566777776433 22111 11234
Q ss_pred EEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 346 VYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 346 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
.+++.+++.++....+...+-..... -.++....+++.++|.+--
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 68999999999999888777443322 2245677889999998764
No 64
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=5.4e-07 Score=85.62 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=75.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH 295 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 295 (1011)
+++.|.|+.|+|||||+++++++.. .-..++++. ..+.. ..... . . +..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~----~~~~~-----~-----------~-~~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR----DRRLA-----D-----------P-DLLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH----HHHHh-----h-----------h-hhHHHHHHhhc
Confidence 6899999999999999999998765 333444543 11110 00000 0 0 01233333333
Q ss_pred CCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchhhhc------cCcCcEEEcCCCCHHHH
Q 001805 296 HKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLLMT------HGVDEVYKLRELHDDNA 357 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~------~~~~~~~~l~~L~~~ea 357 (1011)
.++.+|+||++.....|......+-..++..+|++|+........ .+....+++.||+..|-
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 477899999998888776665554433556899999988765532 12334678999988773
No 65
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2.2e-05 Score=88.03 Aligned_cols=202 Identities=14% Similarity=0.030 Sum_probs=110.7
Q ss_pred cccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc-c-CCceeEeeehhhhhccCChHHH
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH-K-FEGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~-f~~~~~~~~~~~~~~~~~l~~l 264 (1011)
.|....+++|-+...+.|.+.+..+ .-.....++|+.|+||+|+|.++++.+-. . ......-.... .....+....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChH
Confidence 3455678999999999999988754 23567899999999999999999986522 1 11110000000 0000000011
Q ss_pred HHHHHHHH------hCC-CCCCcc--ccccchHHHHh---hh-----cCCcEEEEEccCCCHH--HHHHHhcCCCCCCCC
Q 001805 265 QKQLLSQL------LKL-PNNGIW--NVYDGINIIGS---RL-----HHKKVLLLIDDVVDIK--QLECLAGKREWFGPG 325 (1011)
Q Consensus 265 ~~~ll~~l------~~~-~~~~~~--~~~~~~~~l~~---~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~g 325 (1011)
.+.+...- +.. ...... ...-.++.+++ .+ .+++-++|+||++... ....|+..+..-..+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 11111100 000 000000 00011222322 22 2456789999997543 345555444433456
Q ss_pred ceEEEEeCCchh-hhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 326 SRIIITSRDKHL-LMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 326 s~IIiTTR~~~~-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
+.+|++|.+... ... ......+.+.+++.++..+++...... .. .+....++..++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 677777776643 222 223468899999999999999775411 11 122267899999999855444
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=3.2e-05 Score=93.14 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=111.3
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc-C-Cc-eeEeee-hhhhhc--------
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-F-EG-SSFLAN-VREISK-------- 257 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~~-~~~~~~-------- 257 (1011)
....+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. . .. .|.... ......
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 4467999999999999888643 224567899999999999999999876432 1 00 011100 000000
Q ss_pred -----cCChHHHHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEE
Q 001805 258 -----EGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRII 329 (1011)
Q Consensus 258 -----~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~II 329 (1011)
..++.. .+++... +.. -..+++-++|||+++.. +..+.|+..+.......++|
T Consensus 93 idAas~~kVDd-IReLie~------------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 93 VDAASRTKVDD-TRELLDN------------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred eccccccCHHH-HHHHHHH------------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 011111 1122111 111 12356779999999764 45667666655445567776
Q ss_pred EEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch-HHHH
Q 001805 330 ITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL-ALKV 395 (1011)
Q Consensus 330 iTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~ 395 (1011)
++|.+. .+... ......|++.+|+.++..+.+.+.+-... ..-..+....|++.++|.|- |+..
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 666554 33322 12246899999999999999877663322 12234667889999999885 4433
No 67
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.37 E-value=5.3e-06 Score=87.63 Aligned_cols=173 Identities=19% Similarity=0.217 Sum_probs=96.5
Q ss_pred ccccc-ccchhH-HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHH
Q 001805 191 LKNLV-GIDSHL-KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQL 268 (1011)
Q Consensus 191 ~~~~v-Gr~~~l-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~l 268 (1011)
.++|+ |...+. ..+.++.. +....+.+.|+|.+|+|||+||+++++.....-....++... ... ..+
T Consensus 17 ~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~~~---------~~~ 85 (227)
T PRK08903 17 FDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-SPL---------LAF 85 (227)
T ss_pred hcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-HhH---------HHH
Confidence 34555 554444 33444433 223446789999999999999999998764332334444311 100 000
Q ss_pred HHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCC-CCCc-eEEEEeCCchhhh-----
Q 001805 269 LSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKREWF-GPGS-RIIITSRDKHLLM----- 339 (1011)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IIiTTR~~~~~~----- 339 (1011)
.. ....-+||+||++.. .+.+.+...+... ..+. .||+|++......
T Consensus 86 -----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 86 -----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred -----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 00 112347889999653 2222332222111 2333 3666666432111
Q ss_pred ---ccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 001805 340 ---THGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFL 400 (1011)
Q Consensus 340 ---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~~L 400 (1011)
.......++++++++++-..++...+-.... .-.++..+.+++.+.|++..+..+...+
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1222357899999998877777654422221 1235677788889999998877665544
No 68
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.36 E-value=5.6e-06 Score=83.74 Aligned_cols=176 Identities=24% Similarity=0.277 Sum_probs=94.9
Q ss_pred ccccccccccchhHHHHHHHhhc---CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDK---GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l 264 (1011)
|...++|||-+.-++.+.-++.. ..+...-+.+||++|.||||||.-+++.....|.. ... ..... ..++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg-~~i~k---~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG-PAIEK---AGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC-CC--S---CHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc-hhhhh---HHHH
Confidence 33457899999999887766542 23446778999999999999999999988766631 110 00000 0111
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH--HHHHHhcCCCCC--------CCCc--------
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK--QLECLAGKREWF--------GPGS-------- 326 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~--------~~gs-------- 326 (1011)
..++ ..+ +++-+|.+|.++... +-+.|.+....+ ++++
T Consensus 93 -~~il----------------------~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 93 -AAIL----------------------TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp -HHHH----------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred -HHHH----------------------Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1111 112 234578889997643 334443332211 2222
Q ss_pred ---eEEEEeCCchhhhcc--CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 327 ---RIIITSRDKHLLMTH--GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 327 ---~IIiTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
-|=.|||...+.... ...-+.+++..+.+|-.+...+.+..-. .+-.++.+.+|++++.|-|--..-+
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 233477776443322 1223458999999999999988773322 2334678899999999999644433
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.35 E-value=8.5e-07 Score=90.45 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=35.5
Q ss_pred cccccchhHHHHHHHhh-cCCCCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 193 NLVGIDSHLKNLRLLMD-KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
.||||+.+++++...+. ......+.+.|+|.+|+|||+|.++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995 233456899999999999999999999887766
No 70
>PRK08727 hypothetical protein; Validated
Probab=98.35 E-value=1e-05 Score=85.38 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=95.5
Q ss_pred cccccccch-hHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHH
Q 001805 191 LKNLVGIDS-HLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 191 ~~~~vGr~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
.++||+... .+..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+. ..+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~---------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA---------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH---------hhhhHH
Confidence 345665554 3444443332 2 22346999999999999999999987766554556654 111 111110
Q ss_pred HHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH---HH-HHHhcCCCC-CCCCceEEEEeCCch--------
Q 001805 270 SQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK---QL-ECLAGKREW-FGPGSRIIITSRDKH-------- 336 (1011)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IIiTTR~~~-------- 336 (1011)
. .+ +.+ .+.-+|||||++... .+ +.+...++. ...|..||+||+...
T Consensus 86 ~------------------~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 86 D------------------AL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred H------------------HH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 0 01 111 223489999996431 11 222221111 134667999998542
Q ss_pred -hhhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 337 -LLMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 337 -~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
+.........+++++++.++-.+++.+++...... -.++....+++.++|-.-
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~--l~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLA--LDEAAIDWLLTHGERELA 199 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 11222234588999999999999999877543221 224566677777776543
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=4.9e-05 Score=88.04 Aligned_cols=184 Identities=18% Similarity=0.211 Sum_probs=105.9
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc----CC-----------------cee
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK----FE-----------------GSS 247 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-----------------~~~ 247 (1011)
.....+||.+.-.+.|...+..+ .-.+.+.++|++|+||||+|+.+++.+... +. ...
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 34567999998888888877643 223568899999999999999998865321 10 000
Q ss_pred EeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCC
Q 001805 248 FLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGP 324 (1011)
Q Consensus 248 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 324 (1011)
.+. .+...++..+ +++... +.. ...+++-++|+|+++.. ++.+.++..+...+.
T Consensus 90 el~----aa~~~gid~i-R~i~~~------------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 90 ELD----AASNRGIDEI-RKIRDA------------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEe----CcccCCHHHH-HHHHHH------------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 110 0001111111 111111 110 12345679999999765 345566655543334
Q ss_pred CceEEEEeCC-chhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCC-CchHHHHHHH
Q 001805 325 GSRIIITSRD-KHLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGG-LPLALKVLGS 398 (1011)
Q Consensus 325 gs~IIiTTR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~G-lPLal~~~~~ 398 (1011)
...+|++|.+ ..+... ......+++.+++.++....+...+...... -.++....|+++++| .+.|+..+-.
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4455545443 233222 1234588999999999988887776432221 224566778887765 4566666544
No 72
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.35 E-value=1.3e-06 Score=94.09 Aligned_cols=91 Identities=29% Similarity=0.430 Sum_probs=76.0
Q ss_pred CccccEEEccccCcCccchHHHHHHHHHhCCCeEEecCCcCCCCCcchHHHHHHHHhcceEEEEecCCccc--------C
Q 001805 16 HWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYAC--------S 87 (1011)
Q Consensus 16 ~~~~dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~--------s 87 (1011)
....|||||||..- -+..++-+.-.|+-+||+||+|-+++..|.-- +.+.+-|..++.+|.|++||.+. -
T Consensus 610 skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKFd-ssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKFD-SSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccccc-HHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 45789999997654 36788888889999999999998889888654 48889999999999999999753 2
Q ss_pred cchHHHHHHHHHHHhhCCCceEEEEE
Q 001805 88 TWCLDELVHILECKNKNHQQMVYPIF 113 (1011)
Q Consensus 88 ~~c~~El~~~~~~~~~~~~~~v~pvf 113 (1011)
.|.-.||..+++|. +.|+|||
T Consensus 688 DWVHKEl~~Afe~~-----KNIiPI~ 708 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQ-----KNIIPIF 708 (832)
T ss_pred HHHHHHHHHHHHhc-----CCeeeee
Confidence 47777888888775 7899999
No 73
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.34 E-value=2.7e-06 Score=96.44 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=100.7
Q ss_pred cccccccchhHHHHHHHhhcC-----------CCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC
Q 001805 191 LKNLVGIDSHLKNLRLLMDKG-----------SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG 259 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1011)
..++.|++..+++|.+.+... -...+-+.|+|++|+|||++|+++++.....|-....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~----------- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG----------- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch-----------
Confidence 457899999999998876421 1224569999999999999999999977654321110
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------------HHHHHhcCCCCC-
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------------QLECLAGKREWF- 322 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 322 (1011)
..+. ....+. ........+...-...+.+|+||+++... .+..+...++.+
T Consensus 190 --~~l~----~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 --SELV----RKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred --HHHH----HHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 0111 110000 00000111111123467899999986531 123333222211
Q ss_pred -CCCceEEEEeCCchh-----hhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHhCCCc
Q 001805 323 -GPGSRIIITSRDKHL-----LMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPK-KGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 323 -~~gs~IIiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~GlP 390 (1011)
..+.+||.||..... ......+..+.++..+.++..++|..++.+..... .++ ..+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 236678888875432 22223466899999999999999998875543322 223 44666676654
No 74
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.33 E-value=4.6e-05 Score=86.62 Aligned_cols=183 Identities=15% Similarity=0.160 Sum_probs=110.1
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc----CC-c----------------ee
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK----FE-G----------------SS 247 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~-~----------------~~ 247 (1011)
.....+||.+..++.+.+.+..+. -.+.+.++|++|+||||+|+.++..+... +. + ..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVI 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEE
Confidence 344678999999999999886532 34678899999999999999999875422 11 0 01
Q ss_pred EeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCC
Q 001805 248 FLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGP 324 (1011)
Q Consensus 248 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 324 (1011)
.+.. ....+. ...+++...+ .. -..+++-++|+|+++.. .....+...+.....
T Consensus 90 ~~~~----~~~~~~-~~~~~l~~~~------------------~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 90 EIDA----ASNNGV-DDIREILDNV------------------KYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred Eeec----cccCCH-HHHHHHHHHH------------------hcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 1100 000010 0111122111 10 01244558899998654 445566555544445
Q ss_pred CceEEEEeCCch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHH
Q 001805 325 GSRIIITSRDKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLG 397 (1011)
Q Consensus 325 gs~IIiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~ 397 (1011)
.+.+|++|.+.. +... ......+++.+++.++..+.+...+-...... .++.+..+++.++|.|..+....
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 667777765543 2221 12235788999999999998887764332221 24677889999999987555443
No 75
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=3.9e-05 Score=85.77 Aligned_cols=283 Identities=14% Similarity=0.130 Sum_probs=159.3
Q ss_pred cccccccccccchhHHHHHHHhhc--CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc--eeEeeehhhhhccCChH
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDK--GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG--SSFLANVREISKEGGLI 262 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~l~ 262 (1011)
+...++.+.+|+.+++++...|.. .+..+.-+.|+|.+|.|||+.++.+.+++...... .++++ +.......
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~ 87 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPY 87 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHH
Confidence 334456699999999999888762 11223348999999999999999999988766443 46665 34456677
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHhhhc--CCcEEEEEccCCCHHH-----HHHHhcCCCCCCCCceEE--EEeC
Q 001805 263 SLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH--HKKVLLLIDDVVDIKQ-----LECLAGKREWFGPGSRII--ITSR 333 (1011)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~k~~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~II--iTTR 333 (1011)
++..+++.++.+.+... ....+....+.+.+. ++.++||||+++.... +-.|....... .++|+ ..+-
T Consensus 88 ~i~~~i~~~~~~~p~~g-~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n 164 (366)
T COG1474 88 QVLSKILNKLGKVPLTG-DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSN 164 (366)
T ss_pred HHHHHHHHHcCCCCCCC-CchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEec
Confidence 88888888865333222 233344555555554 5789999999965432 33333332221 44443 3333
Q ss_pred Cchhh--------hccCcCcEEEcCCCCHHHHHHHHHHHh---hccCCCCccHHHHHHHHHHHhCC-CchHHHHHHHH--
Q 001805 334 DKHLL--------MTHGVDEVYKLRELHDDNALRLFCKKA---FKTHQPKKGYEQLSEWVTKYSGG-LPLALKVLGSF-- 399 (1011)
Q Consensus 334 ~~~~~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~l~~~i~~~~~G-lPLal~~~~~~-- 399 (1011)
+.... ...+.. .+..++-+.+|-.+.+..++ |......++.-+++..++.+.+| .=.|+..+-.+
T Consensus 165 ~~~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 165 DDKFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred cHHHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 33221 122333 36788999999999988876 44444555555666666666665 33444443222
Q ss_pred hcC------CChHHHHHHHHHHhcCChhHHHHHHHHhhcCCchhhHHHHhhhccccCCCCHHHHHH----HHhhCCC---
Q 001805 400 LYG------KTTKEWQSAVKRLKRDSENEILDILQISFDGLKETEKEIFLDIACFHRGENRDYVTK----ILDYCDF--- 466 (1011)
Q Consensus 400 L~~------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~----~~~~~~~--- 466 (1011)
++. .+.+.-..+... .-.....-....|+.++|-.+..++..-.+.....+.. +....+.
T Consensus 244 iAe~~~~~~v~~~~v~~a~~~-------~~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~ 316 (366)
T COG1474 244 IAEREGSRKVSEDHVREAQEE-------IERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQR 316 (366)
T ss_pred HHHhhCCCCcCHHHHHHHHHH-------hhHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHH
Confidence 211 011212222111 11233444477899998888776665433333333222 2222222
Q ss_pred CcccchhhccccccEEEe
Q 001805 467 DPVIGIRVLIDKSLIEVL 484 (1011)
Q Consensus 467 ~~~~~l~~L~~~sLi~~~ 484 (1011)
....-+.+|...++|...
T Consensus 317 ~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 317 RFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHHHHHhcCeEEee
Confidence 111235566666666654
No 76
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.2e-05 Score=91.44 Aligned_cols=197 Identities=13% Similarity=0.120 Sum_probs=109.5
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCC-ceeEeeehhhhhccCChHHHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE-GSSFLANVREISKEGGLISLQKQ 267 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~l~~l~~~ 267 (1011)
...+++||-+.-++.|...+..+ .-.+.+.++|..|+||||+|+.+++.+-..-. ..--+. ....+.......
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHHH
Confidence 34578999999999999998754 23467889999999999999999986532100 000000 000000000001
Q ss_pred HHHH----HhCC---CCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-h
Q 001805 268 LLSQ----LLKL---PNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-H 336 (1011)
Q Consensus 268 ll~~----l~~~---~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~ 336 (1011)
+... ++.. ......++.+.++.+.. -..++.-++|||+++.. ...+.|+..+..-..+.++|++|.+. .
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 0000 0000 00001111111111111 01345668999999765 44677776665445566766655544 3
Q ss_pred hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHH
Q 001805 337 LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 337 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal 393 (1011)
+... ......+.++.++.++..+.+.+.+-..... ...+..+.|++.++|.|.-.
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 3322 1223578999999999999887766432222 12345677899999998633
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=1.7e-05 Score=90.29 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=108.3
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCC-c--eeEeee-hhhhhccCChHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE-G--SSFLAN-VREISKEGGLISL 264 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~--~~~~~~-~~~~~~~~~l~~l 264 (1011)
.....+||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+..... . .|.... .+.+...
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g------ 87 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKG------ 87 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHcc------
Confidence 345678999999999998887542 2356899999999999999999986543211 0 011000 0000000
Q ss_pred HHHHHHHHhCC---CCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCC-chh
Q 001805 265 QKQLLSQLLKL---PNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRD-KHL 337 (1011)
Q Consensus 265 ~~~ll~~l~~~---~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~~ 337 (1011)
....+... ......++.+....+.. ...++.-++|+|+++.. +.++.|+..+........+|.+|.. ..+
T Consensus 88 ---~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 88 ---ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred ---CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 00000000 00001111111111111 12356678999999764 4477776665543445555555544 333
Q ss_pred hhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 338 LMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
... ......|.+.+++.++..+.+.+.+-.... .-.++....|++.++|.+-
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 222 122357899999999998888777643322 1235667889999999884
No 78
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.31 E-value=2e-07 Score=92.24 Aligned_cols=106 Identities=36% Similarity=0.495 Sum_probs=35.1
Q ss_pred cccccceecccccccCCcCCcccC-CCCCCcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeee
Q 001805 649 GLKSLKKLYLSGCSKLKNVPENLG-KVESLEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLD 727 (1011)
Q Consensus 649 ~l~~L~~L~l~~c~~l~~lp~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~ 727 (1011)
+..++++|+|.||. +..+ +.++ .+.+|+.|++++|.+.. ++.+..++.|+.|+
T Consensus 17 n~~~~~~L~L~~n~-I~~I-e~L~~~l~~L~~L~Ls~N~I~~------------------------l~~l~~L~~L~~L~ 70 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTI-ENLGATLDKLEVLDLSNNQITK------------------------LEGLPGLPRLKTLD 70 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--------------------------TT----TT--EEE
T ss_pred cccccccccccccc-cccc-cchhhhhcCCCEEECCCCCCcc------------------------ccCccChhhhhhcc
Confidence 44455666666643 3333 2344 45667777777665511 12244567788888
Q ss_pred cCCCCCCCCCCCccc-CCccCCcEEECCCCCCeecC--ccccCCCCCCEEEEcCCcCc
Q 001805 728 LSDCDLGEGAIPNDI-GNLWSLEELYLSKNSFVTAP--ASINRLFNLEELELEDCKRL 782 (1011)
Q Consensus 728 Ls~~~l~~~~~p~~l-~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L 782 (1011)
+++|.+.. +...+ ..+++|+.|+|++|++..+- ..+..+++|+.|+|.+|+-.
T Consensus 71 L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 71 LSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred cCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 88888754 54444 35788888888888876553 35677888889998888754
No 79
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.31 E-value=2.2e-06 Score=81.87 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=71.9
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc-----CCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchH
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK-----FEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGIN 288 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~ 288 (1011)
+.+++.|+|.+|+|||++++.+++..... -...+|+. .........+...++..+..... ...+..+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLK-SRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHH
Confidence 34689999999999999999999876543 23344544 33334778888888888543322 2233444556
Q ss_pred HHHhhhcCCc-EEEEEccCCCH---HHHHHHhcCCCCCCCCceEEEEeCC
Q 001805 289 IIGSRLHHKK-VLLLIDDVVDI---KQLECLAGKREWFGPGSRIIITSRD 334 (1011)
Q Consensus 289 ~l~~~L~~k~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IIiTTR~ 334 (1011)
.+.+.+.+.+ .+||+|+++.. +.++.+....+ ..+.+||+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6666666555 59999999766 33555544443 567788887765
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=98.29 E-value=2.1e-05 Score=83.05 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=87.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH 295 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 295 (1011)
..+.|+|..|+|||.||+++++.+..+-..++|+. ..+.. . . ...+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~---------~----~---------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELL---------D----R---------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHH---------h----h---------------hHHHHHhhh
Confidence 57899999999999999999987665444556654 11111 0 0 011222222
Q ss_pred CCcEEEEEccCCCH---HHH-HHHhcCCCC-CCCCceEEEEeCCchh---------hhccCcCcEEEcCCCCHHHHHHHH
Q 001805 296 HKKVLLLIDDVVDI---KQL-ECLAGKREW-FGPGSRIIITSRDKHL---------LMTHGVDEVYKLRELHDDNALRLF 361 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IIiTTR~~~~---------~~~~~~~~~~~l~~L~~~ea~~Lf 361 (1011)
+-. +||+||+... .++ +.+...++. ...|.++|+|++...- ........++++++++.++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6789999532 222 223222211 1346788998875421 111223357899999999999999
Q ss_pred HHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 362 CKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 362 ~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
..++...... -.+++..-+++.+.|-.-++..+
T Consensus 176 ~~ka~~~~~~--l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 176 QLRASRRGLH--LTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHHH
Confidence 8666443221 12466777777777765554443
No 81
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=6.6e-05 Score=83.33 Aligned_cols=176 Identities=17% Similarity=0.184 Sum_probs=107.3
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc-----CCceeEeeehhhhhccCChHHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-----FEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
++++|-+.-.+.+...+..+ .-.++..++|+.|+||||+|+++++.+-.. ++....+... ........+ .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHH-HH
Confidence 46789888889999888643 335678899999999999999999865321 2222122100 001112222 12
Q ss_pred HHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCC--CHHHHHHHhcCCCCCCCCceEEEEeCCchhh-hc-cC
Q 001805 267 QLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVV--DIKQLECLAGKREWFGPGSRIIITSRDKHLL-MT-HG 342 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~-~~-~~ 342 (1011)
++...+... -..+++-++|+|+++ +......++..+..-.+++.+|++|.+.+.+ .. ..
T Consensus 80 ~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 NIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 222221100 012344456666664 4556777777776656788888888766432 11 12
Q ss_pred cCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 343 VDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 343 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
....+++.+++.++....+.+.. . . ...+.++.++.+++|.|..+.
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~-~--~---~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKY-N--D---IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHh-c--C---CCHHHHHHHHHHcCCCHHHHH
Confidence 24688999999999988776543 1 1 113446778999999986544
No 82
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=7.2e-06 Score=79.80 Aligned_cols=123 Identities=17% Similarity=0.149 Sum_probs=69.8
Q ss_pred cccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhC
Q 001805 195 VGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLK 274 (1011)
Q Consensus 195 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~ 274 (1011)
+|++..+..+...+... ..+.+.|+|.+|+|||++|+++++.....-..+.++. ..+....... ... ... .
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~---~~~-~~~-~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLVV---AEL-FGH-F- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhHH---HHH-hhh-h-
Confidence 47888899998887542 3468999999999999999999997753333334433 2111111000 000 000 0
Q ss_pred CCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--H---HHHHHhcCCCCC---CCCceEEEEeCCch
Q 001805 275 LPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--K---QLECLAGKREWF---GPGSRIIITSRDKH 336 (1011)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~---~~~~l~~~~~~~---~~gs~IIiTTR~~~ 336 (1011)
............++.+||+||++.. . .+..+....... ..+.+||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111223456789999999853 2 233333332221 35778888887653
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=7.7e-07 Score=107.68 Aligned_cols=102 Identities=25% Similarity=0.342 Sum_probs=49.5
Q ss_pred eeeCCCCCCCcCcccccCcchhhhcccCCccccc-cCcccCCCCCCcEEeecCCCCCcccCcccccccccceeccccccc
Q 001805 585 WNLSGLLKFSNFPEIMTNMEHVLELHLEGTAIRG-LPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSK 663 (1011)
Q Consensus 585 L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~-lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~ 663 (1011)
|+|++|...+.+|..+.++++|+.|+|++|.+.+ +|.+++.+++|+.|+|++|.....+|..+++|++|+.|+|++|..
T Consensus 423 L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l 502 (623)
T PLN03150 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL 502 (623)
T ss_pred EECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc
Confidence 3444433333444444444444444444444442 444455555555555555544445555555555555555555554
Q ss_pred CCcCCcccCCC-CCCcEEEcCCCC
Q 001805 664 LKNVPENLGKV-ESLEVLELSGCK 686 (1011)
Q Consensus 664 l~~lp~~l~~l-~~L~~L~l~~~~ 686 (1011)
.+.+|..++.+ .++..+++.+|.
T Consensus 503 ~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 503 SGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cccCChHHhhccccCceEEecCCc
Confidence 45555544432 244455555543
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.27 E-value=5.8e-05 Score=91.56 Aligned_cols=171 Identities=23% Similarity=0.317 Sum_probs=100.1
Q ss_pred cccccccccchhHH---HHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHH
Q 001805 189 GILKNLVGIDSHLK---NLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~ 265 (1011)
...++|||.+..+. .+.+.+.. +....+.++|++|+||||||+.+++.....|. .+... ..++..+
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di- 93 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL- 93 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH-
Confidence 33467899998874 46666653 34556789999999999999999987655442 11110 0111111
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHhhh--cCCcEEEEEccCCC--HHHHHHHhcCCCCCCCCceEEEE--eCCch--h
Q 001805 266 KQLLSQLLKLPNNGIWNVYDGINIIGSRL--HHKKVLLLIDDVVD--IKQLECLAGKREWFGPGSRIIIT--SRDKH--L 337 (1011)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiT--TR~~~--~ 337 (1011)
++++. .....+ .+++.+|||||++. ..+.+.+.... ..|..++|+ |.+.. +
T Consensus 94 r~~i~------------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 94 RAEVD------------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEV 152 (725)
T ss_pred HHHHH------------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhh
Confidence 11111 111111 24567999999964 44566666544 245555553 34331 1
Q ss_pred hhc-cCcCcEEEcCCCCHHHHHHHHHHHhhcc-----CCCCccHHHHHHHHHHHhCCCch
Q 001805 338 LMT-HGVDEVYKLRELHDDNALRLFCKKAFKT-----HQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
... .....++.+++|+.++...++.+.+-.. .....-.++....|++++.|.--
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 1123578999999999999987765310 11112235666788888888754
No 85
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=8.3e-07 Score=107.41 Aligned_cols=82 Identities=30% Similarity=0.412 Sum_probs=42.4
Q ss_pred hhhcccCCccccc-cCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCC
Q 001805 606 VLELHLEGTAIRG-LPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSG 684 (1011)
Q Consensus 606 L~~L~L~~~~i~~-lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 684 (1011)
++.|+|+++.+.+ +|.+++.+++|+.|+|++|...+.+|..++.+++|+.|+|++|...+.+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 3444555555543 444555555555555555544445555555555555555555544445555555555555555555
Q ss_pred CCC
Q 001805 685 CKG 687 (1011)
Q Consensus 685 ~~~ 687 (1011)
|.+
T Consensus 500 N~l 502 (623)
T PLN03150 500 NSL 502 (623)
T ss_pred Ccc
Confidence 544
No 86
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=3.1e-05 Score=81.10 Aligned_cols=139 Identities=16% Similarity=0.118 Sum_probs=85.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
.+.+.|+|.+|+|||+|+++++.... ..|+.. .....++...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~----------~~~~~~~~~~~---------------------- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP----------NEIGSDAANAA---------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH----------HHcchHHHHhh----------------------
Confidence 46789999999999999999887532 224431 01111111111
Q ss_pred cCCcEEEEEccCCCH----HHHHHHhcCCCCCCCCceEEEEeCCc---------hhhhccCcCcEEEcCCCCHHHHHHHH
Q 001805 295 HHKKVLLLIDDVVDI----KQLECLAGKREWFGPGSRIIITSRDK---------HLLMTHGVDEVYKLRELHDDNALRLF 361 (1011)
Q Consensus 295 ~~k~~LlVlDdv~~~----~~~~~l~~~~~~~~~gs~IIiTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~Lf 361 (1011)
.+ -+|++||++.. +.+-.+..... ..|..||+|++.. ++........++++++++.++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 01 27888999542 23333332222 3467899998742 23333444568999999999999999
Q ss_pred HHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 362 CKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 362 ~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
.+.+-.... .-.+++..-|++.+.|..-++..+
T Consensus 163 ~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 163 FKLFADRQL--YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 888743221 123567777888888776665543
No 87
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=5e-05 Score=89.71 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=106.8
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc---eeEee-ehhhhhccCChHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG---SSFLA-NVREISKEGGLIS 263 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~-~~~~~~~~~~l~~ 263 (1011)
|....++||.+..++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-..-.. .|-.. ..+.+.... ..+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~-~~D 89 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGR-YVD 89 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccC-ccc
Confidence 334578999999999999998753 234678999999999999999998864321100 00000 000000000 000
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCHHH--HHHHhcCCCCCCCCceEEEEeCCch-hhh
Q 001805 264 LQKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDIKQ--LECLAGKREWFGPGSRIIITSRDKH-LLM 339 (1011)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~-~~~ 339 (1011)
+ + .+-........++.+.+...... ..+++-++|||+++.... ...|+..+.......++|++|.+.. +..
T Consensus 90 v----l-EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 90 L----L-EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred e----E-EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 0 0 00000000000111111111000 124566899999976543 4445444433345667777775543 221
Q ss_pred c-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHH
Q 001805 340 T-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 340 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal 393 (1011)
. ......+.+.+++.++..+.+.+.+-..... -..+....|++.++|.+.-+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHH
Confidence 1 1223467888999999999888766433322 12456778999999988533
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.7e-05 Score=90.97 Aligned_cols=182 Identities=19% Similarity=0.169 Sum_probs=108.3
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC---------------------Ccee
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF---------------------EGSS 247 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 247 (1011)
.....+||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+.... ....
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34467899999999999888643 2346688999999999999999998653211 1111
Q ss_pred EeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCC
Q 001805 248 FLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGP 324 (1011)
Q Consensus 248 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 324 (1011)
.+. .....++..+ ++++ +.+... ..+++-++|+|+++.. ...+.|+..+.....
T Consensus 92 eid----aas~~gvd~i-r~ii------------------~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 92 EID----AASRTGVEET-KEIL------------------DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred Eee----cccccCHHHH-HHHH------------------HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 110 0011111111 1111 111111 2356679999999754 446666666554455
Q ss_pred CceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 001805 325 GSRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL-ALKVL 396 (1011)
Q Consensus 325 gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 396 (1011)
.+.+|++|-+. .+... .....++++.+++.++..+.+.+.+-.... .-.++....|++.++|.+- |+..+
T Consensus 149 ~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 149 YVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66666555443 33322 223468899999999988887765533221 2234556778899998664 44443
No 89
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.22 E-value=5.5e-05 Score=78.92 Aligned_cols=180 Identities=21% Similarity=0.249 Sum_probs=96.5
Q ss_pred ccc-cccchhHH-HHHHHhhcC-CCCceEEEEEecCCchhHHHHHHHHHHhhccCCc--eeEeeehhhhhccCChHHHHH
Q 001805 192 KNL-VGIDSHLK-NLRLLMDKG-SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG--SSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 192 ~~~-vGr~~~l~-~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
++| +|-..+.. .....+... ......+.|+|..|.|||.|.+++++.+....+. ++++. . .+...
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~---------~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-A---------EEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-H---------HHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-H---------HHHHH
Confidence 344 57655432 223333332 2234568899999999999999999987665432 34443 1 22333
Q ss_pred HHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH---HH-HHHhcCCCC-CCCCceEEEEeCCchh-h--
Q 001805 267 QLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK---QL-ECLAGKREW-FGPGSRIIITSRDKHL-L-- 338 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IIiTTR~~~~-~-- 338 (1011)
.+...+.. .....++..++. -=+|++||++... .+ +.+...++. ...|.+||+|++.... +
T Consensus 78 ~~~~~~~~----------~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRD----------GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHT----------TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHc----------ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 33333221 123445555553 3478899996532 11 222211111 1346789999965421 1
Q ss_pred ------hccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 339 ------MTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 339 ------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
......-++++++++.++-.+++.+.+-..... -.+++++-+++.+.+..-.|.
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 122334579999999999999998888543322 235666667777666554444
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=0.00013 Score=84.18 Aligned_cols=177 Identities=20% Similarity=0.220 Sum_probs=107.6
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC---------------------Ccee
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF---------------------EGSS 247 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~ 247 (1011)
....++||-+.-++.|...+..+. -.+.+.++|+.|+||||+|+.++..+-... ..+.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 345789999999999988886532 245899999999999999999987542111 1111
Q ss_pred EeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCC
Q 001805 248 FLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGP 324 (1011)
Q Consensus 248 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~ 324 (1011)
.++ .+...+..++ ++++.. .... ..+++-++|+|+++.. ...+.|...+..-.+
T Consensus 89 eid----aas~~~vddI-R~Iie~------------------~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 89 EID----AASNTSVDDI-KVILEN------------------SCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEe----cccCCCHHHH-HHHHHH------------------HHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 111 0111121111 111111 1100 1245568999999754 346666655554456
Q ss_pred CceEEEEeCC-chhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 325 GSRIIITSRD-KHLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 325 gs~IIiTTR~-~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
..++|++|.+ ..+... ......+++.+++.++..+.+.+.+-.....- .++....|++.++|.+-
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMR 212 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 6777766643 333322 22346789999999999999888774433222 24566789999998775
No 91
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.21 E-value=1.8e-07 Score=108.10 Aligned_cols=109 Identities=26% Similarity=0.279 Sum_probs=65.5
Q ss_pred cccCCCCCeeeeCCCCCCCcCcccccCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccce
Q 001805 576 ISALKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKK 655 (1011)
Q Consensus 576 l~~L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~ 655 (1011)
+..++.|..|++.+| .+..+...+..|++|++|+|++|.|+.+.. +..++.|+.|++.+|. +..++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhcc-CCccchhhhc
Confidence 455555666666665 444444445667777777777777777655 5666667777777765 44443 3344677777
Q ss_pred ecccccccCCcCCcc-cCCCCCCcEEEcCCCCCCC
Q 001805 656 LYLSGCSKLKNVPEN-LGKVESLEVLELSGCKGPP 689 (1011)
Q Consensus 656 L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~~~~ 689 (1011)
+++++|... .+... +..+.+|+.+.+.+|.+..
T Consensus 167 l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 167 LDLSYNRIV-DIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCCcchhh-hhhhhhhhhccchHHHhccCCchhc
Confidence 777775432 22221 3566667777777766633
No 92
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.20 E-value=4e-05 Score=81.05 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=87.4
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
..+.+.|+|++|+|||+||+++++.....-..+.|+. +.... ....++ .+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~------~~~~~~----------------------~~~ 94 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRA------WFVPEV----------------------LEG 94 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHh------hhhHHH----------------------HHH
Confidence 3467899999999999999999987665433445554 11100 000011 111
Q ss_pred hcCCcEEEEEccCCCH---HHHHH-HhcCCCC-CCCC-ceEEEEeCCch---------hhhccCcCcEEEcCCCCHHHHH
Q 001805 294 LHHKKVLLLIDDVVDI---KQLEC-LAGKREW-FGPG-SRIIITSRDKH---------LLMTHGVDEVYKLRELHDDNAL 358 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-s~IIiTTR~~~---------~~~~~~~~~~~~l~~L~~~ea~ 358 (1011)
+.+ --+|++||++.. .+|+. +...++. ...| .++|+||+... +...+....+++++++++++-.
T Consensus 95 ~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~ 173 (235)
T PRK08084 95 MEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKL 173 (235)
T ss_pred hhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHH
Confidence 111 137899999653 22221 1111110 0123 47999998552 2222334468999999999999
Q ss_pred HHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 359 RLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 359 ~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
+.+.+++..... .-.+++..-+++.+.|..-++..+
T Consensus 174 ~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 174 QALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 998776643221 223567777888888765544433
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=0.00014 Score=84.57 Aligned_cols=193 Identities=17% Similarity=0.142 Sum_probs=108.7
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCC-------ceeEee-ehhhhhcc-
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE-------GSSFLA-NVREISKE- 258 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~-~~~~~~~~- 258 (1011)
|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ..|... ........
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 344567899999999998877643 23467899999999999999999986532110 001110 00000000
Q ss_pred -CChHHHHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEE-EeC
Q 001805 259 -GGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIII-TSR 333 (1011)
Q Consensus 259 -~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi-TTR 333 (1011)
.++.. +.........++.+.++.... -..+++-++|+|+++.. ..++.|...+....+.+.+|+ ||+
T Consensus 96 h~Dv~e--------idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 96 HPDIIE--------IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred CCcEEE--------eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 00000 000000011111111111111 12356678999999864 446667655554445666655 444
Q ss_pred Cchhhhcc-CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 334 DKHLLMTH-GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 334 ~~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
...+.... .....+++.+++.++..+.+...+-...... ..+....|++.++|.+-
T Consensus 168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i--e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT--DIEALRIIAYKSEGSAR 224 (507)
T ss_pred hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 44443322 2335789999999999999988875433221 24556779999999774
No 94
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=3.1e-06 Score=93.77 Aligned_cols=63 Identities=27% Similarity=0.506 Sum_probs=41.7
Q ss_pred CCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCcccccCCCCCeeeeCCCCCCCcCcc
Q 001805 530 SMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPE 598 (1011)
Q Consensus 530 ~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~l~~lp~ 598 (1011)
.+.+++.|++++|.++++|.+ .++|+.|++++|..+..+|..+. ..|++|.+++|..+..+|.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~L----P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVL----PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCC----CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc
Confidence 357777888888877777742 34678888887777777776442 3455577777655555554
No 95
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.19 E-value=1e-06 Score=87.23 Aligned_cols=103 Identities=26% Similarity=0.384 Sum_probs=35.4
Q ss_pred cCCCCCCcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCC-CCCCCCeeecCCCCCCCCCCCcccCCccCCc
Q 001805 671 LGKVESLEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLS-GLWSLRKLDLSDCDLGEGAIPNDIGNLWSLE 749 (1011)
Q Consensus 671 l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~-~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~ 749 (1011)
+.+..++++|+|++|.+... ..++ .+.+|+.|+|++|.+.. + +.+..++.|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I------------------------e~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~ 67 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI------------------------ENLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLK 67 (175)
T ss_dssp ---------------------------------------------S--TT-TT--EEE-TTS--S-----TT----TT--
T ss_pred cccccccccccccccccccc------------------------cchhhhhcCCCEEECCCCCCcc--c-cCccChhhhh
Confidence 44556788899988876221 1233 46789999999999864 4 4577899999
Q ss_pred EEECCCCCCeecCccc-cCCCCCCEEEEcCCcCccccCCC-----CCCccEEeecCCC
Q 001805 750 ELYLSKNSFVTAPASI-NRLFNLEELELEDCKRLQSMPQL-----PPNIKEVGVNGCA 801 (1011)
Q Consensus 750 ~L~L~~n~l~~lp~~i-~~l~~L~~L~L~~c~~L~~lp~l-----p~~L~~L~l~~c~ 801 (1011)
.|++++|.+++++..+ ..+++|+.|++++|+ +.++.++ .|+|+.|++.++|
T Consensus 68 ~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 68 TLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCc
Confidence 9999999999997655 469999999999864 4444332 2556666666554
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.18 E-value=1.1e-05 Score=85.07 Aligned_cols=148 Identities=21% Similarity=0.324 Sum_probs=90.8
Q ss_pred ccccccccchhHHH---HHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHH
Q 001805 190 ILKNLVGIDSHLKN---LRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
..+++||.+..+.+ |.+++. .+....+.+||++|.||||||+.++..-+.+- ..|+. .+....-..-.+
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR 207 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVR 207 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHH
Confidence 34566776665543 344443 35677888999999999999999987543332 44554 222222122222
Q ss_pred HHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCC--HHHHHHHhcCCCCCCCCceEEE--EeCCchhhh---
Q 001805 267 QLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVD--IKQLECLAGKREWFGPGSRIII--TSRDKHLLM--- 339 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIi--TTR~~~~~~--- 339 (1011)
.++.+.. -...+..+|.+|.+|.|.. ..|-+.+++.. ..|.-++| ||.++..-.
T Consensus 208 ~ife~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 208 DIFEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred HHHHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHH
Confidence 3333210 1123467899999999964 44556666554 45766665 777764311
Q ss_pred ccCcCcEEEcCCCCHHHHHHHHHHH
Q 001805 340 THGVDEVYKLRELHDDNALRLFCKK 364 (1011)
Q Consensus 340 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 364 (1011)
-.....++.++.|+.++...++.+.
T Consensus 269 LlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 269 LLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HHhccceeEeccCCHHHHHHHHHHH
Confidence 1233468899999999999988773
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.1e-05 Score=85.31 Aligned_cols=197 Identities=17% Similarity=0.133 Sum_probs=111.8
Q ss_pred cccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc----CCceeEeeehhhhhccCChH
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK----FEGSSFLANVREISKEGGLI 262 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~l~ 262 (1011)
.|.....++|-+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 4556678999999999999998754 235679999999999999999999876431 1111000 000011
Q ss_pred HHHHHHHHH-------HhCCCCC------CccccccchHHHHhhh-----cCCcEEEEEccCCCHH--HHHHHhcCCCCC
Q 001805 263 SLQKQLLSQ-------LLKLPNN------GIWNVYDGINIIGSRL-----HHKKVLLLIDDVVDIK--QLECLAGKREWF 322 (1011)
Q Consensus 263 ~l~~~ll~~-------l~~~~~~------~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~ 322 (1011)
...+.+... +....+. ..-.+++ +..+.+.+ .+++-++|+|+++... ..+.|+..+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 111222111 0000000 0000111 12222222 3456789999997643 345555444333
Q ss_pred CCCceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 323 GPGSRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 323 ~~gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
.....+|++|... .+... ......+.+.+++.++..+++...+... . -.++....+++.++|.|.....+
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 4455555555433 33222 1223589999999999999998743211 1 12455678999999999855443
No 98
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.00019 Score=85.23 Aligned_cols=190 Identities=15% Similarity=0.175 Sum_probs=107.5
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC----CceeEeeehhhhhccCChHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF----EGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~~l~~l 264 (1011)
....++||-+.-++.|..++..+ .-...+.++|..|+||||+|+.+++.+-..- .+... ...+....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~--------~pCg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA--------TPCGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC--------CCCCccHH
Confidence 34567999888888899988754 2346789999999999999999987653110 00000 00000011
Q ss_pred HHHHHHH----HhCCCCCCccccccchHHHHhhh--------cCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEE
Q 001805 265 QKQLLSQ----LLKLPNNGIWNVYDGINIIGSRL--------HHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIII 330 (1011)
Q Consensus 265 ~~~ll~~----l~~~~~~~~~~~~~~~~~l~~~L--------~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIi 330 (1011)
.+.+... +...... ....++.+++.+ .++.-++|||+|+.. .....|+..+..-....++|+
T Consensus 84 C~~i~~g~h~D~~eldaa----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL 159 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAA----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVL 159 (618)
T ss_pred HHHHHcCCCCceeecCcc----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEE
Confidence 1111000 0000000 001122222211 234558899999764 346666666554445666766
Q ss_pred EeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHH
Q 001805 331 TSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 331 TTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal 393 (1011)
+|.+. .+... ......+++++++.++..+.+.+.+-...... ..+....|++.++|.+--+
T Consensus 160 ~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 160 ATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred EECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 65443 33222 22346889999999999998887764333222 2456677889999877433
No 99
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=0.00011 Score=87.43 Aligned_cols=192 Identities=15% Similarity=0.141 Sum_probs=108.4
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQL 268 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~l 268 (1011)
....++||-+.-++.|...+..+. -...+.++|..|+||||+|+.+++.+-...... ....+.....+++
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------ATPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CCCCCCCHHHHHH
Confidence 345789999999999999887542 245678999999999999999988653321000 0000000111111
Q ss_pred HHH----Hh--CCC-CCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-hh
Q 001805 269 LSQ----LL--KLP-NNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-HL 337 (1011)
Q Consensus 269 l~~----l~--~~~-~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~ 337 (1011)
... +. ... .....++.+....+.. -..+++-++|||+++.. ...+.|+..+.......++|++|.+. .+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 00 000 0001111111111111 12356678999999754 34666655554434566666655554 33
Q ss_pred hhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 338 LMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
... ......+.+.+++.++..+.+.+.+-..... ...+....|++.++|.+--
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRD 216 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 322 2224689999999999999887765332221 2245567799999998763
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=5.5e-05 Score=85.51 Aligned_cols=175 Identities=14% Similarity=0.104 Sum_probs=103.7
Q ss_pred ccccccchhHHHHHHHhhcCCC--------CceEEEEEecCCchhHHHHHHHHHHhhccCC-------------------
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSN--------DVRMIGICGMGGIGKTTLARVVYDLTSHKFE------------------- 244 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------------------- 244 (1011)
+.++|-+.-++.|.+.+..+.. -.+.+.++|++|+|||++|+.++..+-....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 5688999999999998875431 3567899999999999999999886532211
Q ss_pred -ceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCHH--HHHHHhcCCC
Q 001805 245 -GSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDIK--QLECLAGKRE 320 (1011)
Q Consensus 245 -~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~--~~~~l~~~~~ 320 (1011)
...++.- .....++.+ .+++... +.. -..+++-++|+|+++... ....|+..+.
T Consensus 85 pD~~~i~~---~~~~i~i~~-iR~l~~~------------------~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 85 PDVRVVAP---EGLSIGVDE-VRELVTI------------------AARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCEEEecc---ccccCCHHH-HHHHHHH------------------HHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 1111110 000001111 0111111 100 012345578889997643 3444554444
Q ss_pred CCCCCceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHH
Q 001805 321 WFGPGSRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKV 395 (1011)
Q Consensus 321 ~~~~gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 395 (1011)
...++..+|++|.+. .+... ......+.+.+++.++..+.+.... .. ..+.+..++..++|.|.....
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~----~~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GV----DPETARRAARASQGHIGRARR 212 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHH
Confidence 335567777766664 33322 2234688999999999998886432 11 135577889999999864433
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00011 Score=86.11 Aligned_cols=179 Identities=15% Similarity=0.141 Sum_probs=106.1
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc---------------------CCcee
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK---------------------FEGSS 247 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~ 247 (1011)
....++||-+.-++.|..++..+ .-.....++|+.|+||||+|+.+++.+-.. +....
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 34577999999999999999653 234568899999999999999999865321 11111
Q ss_pred EeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCC
Q 001805 248 FLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPG 325 (1011)
Q Consensus 248 ~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~g 325 (1011)
.+. .....++.++ ++++..+.- .-..++.-++|+|+|+.. .....++..+......
T Consensus 92 eid----aas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 92 EVD----AASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEc----ccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 111 0111122221 122221100 001245568899999764 4456666555544566
Q ss_pred ceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 326 SRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 326 s~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
+++|++|.+. .+... ......+++++++.++..+.+.+.+-...... ..+....|++.++|.+.-
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRD 216 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHH
Confidence 7777666544 22211 12235688999999988877666653322221 234566788999998753
No 102
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.13 E-value=3.2e-05 Score=79.73 Aligned_cols=264 Identities=19% Similarity=0.236 Sum_probs=142.2
Q ss_pred ccccccccccchhHHHHHHHhhc---CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDK---GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l 264 (1011)
|.....|||-++-.++|.-.+.. .....--|.++|++|.||||||.-+++.+...+....=- ......++
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp----~leK~gDl--- 94 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGP----ALEKPGDL--- 94 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccc----cccChhhH---
Confidence 34457899999988888766652 223355799999999999999999999876554321000 00111111
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHHH-HHHH-hcCCCCC--------CCCceEE-----
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQ-LECL-AGKREWF--------GPGSRII----- 329 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-~~~l-~~~~~~~--------~~gs~II----- 329 (1011)
..++.. |... =++.+|.++...- ++++ -+....+ ++++|.|
T Consensus 95 -aaiLt~----------------------Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 95 -AAILTN----------------------LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred -HHHHhc----------------------CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 111111 1112 2455676654321 2221 1221111 3444432
Q ss_pred ------EEeCCchhhhcc--CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHHHhc
Q 001805 330 ------ITSRDKHLLMTH--GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFLY 401 (1011)
Q Consensus 330 ------iTTR~~~~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~~L~ 401 (1011)
-|||.-.+.... ...-+.+++--+.+|-.+...+.|..-. .+-.++.+.+|+++..|-|--..-+-...+
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 488866442211 1234678888999999999988883222 222356788999999999953333322221
Q ss_pred CCChHHHHHHHHH--HhcCChhHHHHHHHHhhcCCchhhHHHHhhhccccCCC--CHHHHHHHHhhCCCCcccchh-hcc
Q 001805 402 GKTTKEWQSAVKR--LKRDSENEILDILQISFDGLKETEKEIFLDIACFHRGE--NRDYVTKILDYCDFDPVIGIR-VLI 476 (1011)
Q Consensus 402 ~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~~~~l~-~L~ 476 (1011)
++..+-.. +...........|.+-=.+|+...++.+..+.-.+.|. ..+.+...+..+....+..++ .|+
T Consensus 229 -----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLi 303 (332)
T COG2255 229 -----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLI 303 (332)
T ss_pred -----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHH
Confidence 11111100 00001123344555555677888888877776555443 345555554433222222222 477
Q ss_pred ccccEEEecCCeE
Q 001805 477 DKSLIEVLSNNQL 489 (1011)
Q Consensus 477 ~~sLi~~~~~~~~ 489 (1011)
+.++|+....+++
T Consensus 304 q~gfi~RTpRGR~ 316 (332)
T COG2255 304 QQGFIQRTPRGRI 316 (332)
T ss_pred HhchhhhCCCcce
Confidence 8888887765554
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00012 Score=85.57 Aligned_cols=197 Identities=17% Similarity=0.159 Sum_probs=105.7
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQ 267 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ 267 (1011)
|.....++|.+.-++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...-.... ...+-....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~---------~~Cg~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG---------DCCNSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---------CCCcccHHHHH
Confidence 334578999999999999888643 23467899999999999999999987632110000 00000011111
Q ss_pred HHHHH----hCCC---CCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCC-ch
Q 001805 268 LLSQL----LKLP---NNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRD-KH 336 (1011)
Q Consensus 268 ll~~l----~~~~---~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~ 336 (1011)
+.... .... .....++.+....+... ...++-++|+|+++.. .....|+..+........+|++|.. ..
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 10000 0000 00000011111111110 1123346999999763 3455555544333445566555533 33
Q ss_pred hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 001805 337 LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL-ALKVL 396 (1011)
Q Consensus 337 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 396 (1011)
+... ......+++.+++.++....+...+-.....- ..+.+..+++.++|.+- |+..+
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I--s~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI--EDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 3222 22345789999999999988877664322111 24557788999999664 44333
No 104
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.10 E-value=9.1e-05 Score=75.65 Aligned_cols=88 Identities=19% Similarity=0.275 Sum_probs=60.1
Q ss_pred CCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCC
Q 001805 296 HKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQP 371 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 371 (1011)
+.+-++|+||++... ..+.++..+....+.+.+|++|++. .+... ......+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456689999997643 3566666555545667777777654 22221 122358999999999998888776 1 1
Q ss_pred CccHHHHHHHHHHHhCCCch
Q 001805 372 KKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 372 ~~~~~~l~~~i~~~~~GlPL 391 (1011)
.++.+..+++.++|.|.
T Consensus 170 ---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPG 186 (188)
T ss_pred ---CHHHHHHHHHHcCCCcc
Confidence 14668889999999885
No 105
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00013 Score=83.67 Aligned_cols=198 Identities=12% Similarity=0.129 Sum_probs=107.0
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--CCceeEeeehhhhhccCChHHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--FEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
.....++|-+.-.+.|...+..+ .-...+.++|+.|+||||+|+.+++.+... ++..-|.... ....+.....+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHH
Confidence 34567899999889998888653 224568899999999999999999876431 1100000000 00000001111
Q ss_pred HHHHHH----hCCCCCCccccccchHHHHhhh-----cCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEe-CC
Q 001805 267 QLLSQL----LKLPNNGIWNVYDGINIIGSRL-----HHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITS-RD 334 (1011)
Q Consensus 267 ~ll~~l----~~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~ 334 (1011)
.+.... ...........++ +..+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++| +.
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~-Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDD-IRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHH-HHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 111000 0000000000111 11122222 245568899999754 34666665555445566666555 43
Q ss_pred chhhhcc-CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHH
Q 001805 335 KHLLMTH-GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 335 ~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal 393 (1011)
..+.... .....+++.+++.++..+.+...+-.... .-..+.+..+++.++|.+--+
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3333221 12346889999999998888776532221 122567788999999987533
No 106
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.09 E-value=6.8e-08 Score=101.56 Aligned_cols=64 Identities=31% Similarity=0.377 Sum_probs=34.6
Q ss_pred CCCCCCCCeeecCCCCCCCCCC---Cccc-CCccCCcEEECCCCCCe-----ecCccccCCCCCCEEEEcCCc
Q 001805 717 LSGLWSLRKLDLSDCDLGEGAI---PNDI-GNLWSLEELYLSKNSFV-----TAPASINRLFNLEELELEDCK 780 (1011)
Q Consensus 717 l~~l~~L~~L~Ls~~~l~~~~~---p~~l-~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 780 (1011)
++.+++|+.|++++|.+....- -+.+ ...|+|+.|.|.+|.++ .+-.++...+.|+.|+|++|.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 4445566667777666543221 1111 23566677777766654 123344456666666666664
No 107
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00018 Score=81.85 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=105.1
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--------CCceeEeeehhhhhccCC
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--------FEGSSFLANVREISKEGG 260 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 260 (1011)
...+.++|.+..++.+...+..+ .-.+.+.++|++|+||||+|+++++.+... |...++-. . .....+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCCC
Confidence 34467899999999999988653 234688899999999999999998876431 11111110 0 000111
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEe-CCchh
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITS-RDKHL 337 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~~~~ 337 (1011)
... ..++..++... -..+++-++|+|+++.. ..++.+...+......+.+|++| +...+
T Consensus 90 ~~~-i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 90 VDD-IRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred HHH-HHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 111 11222221000 01234558999998654 33555544433223455666555 33333
Q ss_pred hhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 338 LMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
... .....++++++++.++....+...+......- ..+....+++.++|.+-.
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i--~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF--EDDALHIIAQKADGALRD 205 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhCCCCHHH
Confidence 221 12235789999999999988887774433221 246777888899987653
No 108
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.08 E-value=0.00017 Score=83.52 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=97.4
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCC--ceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFE--GSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS 292 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 292 (1011)
...+.|+|..|.|||+|++++++.+....+ .++++. . ..+...+...+.... .....+++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~---------~~f~~~~~~~l~~~~--------~~~~~~~~ 202 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-G---------DEFARKAVDILQKTH--------KEIEQFKN 202 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHHHhh--------hHHHHHHH
Confidence 346889999999999999999997654332 233433 1 233344443321100 11233444
Q ss_pred hhcCCcEEEEEccCCCHH----HHHHHhcCCCC-CCCCceEEEEeCCch-h--------hhccCcCcEEEcCCCCHHHHH
Q 001805 293 RLHHKKVLLLIDDVVDIK----QLECLAGKREW-FGPGSRIIITSRDKH-L--------LMTHGVDEVYKLRELHDDNAL 358 (1011)
Q Consensus 293 ~L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~-~--------~~~~~~~~~~~l~~L~~~ea~ 358 (1011)
.++ ..-+||+||+.... ..+.+...++. ...|..||+|+.... . .......-++++++++.++-.
T Consensus 203 ~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 203 EIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred Hhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 444 34578899995432 22333222211 134557888876432 1 122233457889999999999
Q ss_pred HHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHHHH
Q 001805 359 RLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGS 398 (1011)
Q Consensus 359 ~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~ 398 (1011)
+++.+++-.......-.++...-|++.++|.|-.+.-+..
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9998887432211123367888899999999987765543
No 109
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.06 E-value=3.3e-05 Score=87.98 Aligned_cols=172 Identities=17% Similarity=0.231 Sum_probs=97.5
Q ss_pred cccccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC
Q 001805 191 LKNLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG 259 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1011)
..++.|++..+++|.+.+.. +-...+-|.++|++|+|||++|++++++....|- .....+
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i----~v~~~~----- 200 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI----RVVGSE----- 200 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE----EeehHH-----
Confidence 35788999999999887641 1133567999999999999999999987654321 111111
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH------------H----HHHHhcCCCCC-
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK------------Q----LECLAGKREWF- 322 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~------------~----~~~l~~~~~~~- 322 (1011)
+.....+.. .......+...-...+.+|+|||++... . +..+....+.+
T Consensus 201 --------l~~~~~g~~------~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 201 --------LVQKFIGEG------ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --------HhHhhccch------HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111100000 0000111111223567899999997541 1 22233222211
Q ss_pred -CCCceEEEEeCCchhhh-----ccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHhCCC
Q 001805 323 -GPGSRIIITSRDKHLLM-----THGVDEVYKLRELHDDNALRLFCKKAFKTHQPK-KGYEQLSEWVTKYSGGL 389 (1011)
Q Consensus 323 -~~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~Gl 389 (1011)
..+.+||.||....... ....+..++++..+.++..++|..+..+..... .++ ..+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 23556777776543221 123456899999999999999988774433222 223 3455566664
No 110
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00023 Score=84.12 Aligned_cols=196 Identities=17% Similarity=0.150 Sum_probs=108.7
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQL 268 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~l 268 (1011)
....++||.+.-++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-...... . ...+.....+.+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~--------~pCg~C~~C~~i 79 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A--------TPCGVCESCVAL 79 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C--------CcccccHHHHHh
Confidence 34568999999999999998753 2345678999999999999999998654211000 0 000000000011
Q ss_pred HHH---------HhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCC-c
Q 001805 269 LSQ---------LLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRD-K 335 (1011)
Q Consensus 269 l~~---------l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~ 335 (1011)
... +-........++.++.+.+... ..+++-++|+|+++.. ...+.|+..+........+|++|.+ .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000 0000000011111111111111 1245568899999753 4466666665544556666655543 3
Q ss_pred hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 001805 336 HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL-ALKVL 396 (1011)
Q Consensus 336 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 396 (1011)
.+... ......+++..++.++..+.+.+.+-...... ..+....|++.++|.+- |+..+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 33322 22346899999999999888877664333221 24556778899999774 44444
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00014 Score=85.88 Aligned_cols=186 Identities=16% Similarity=0.168 Sum_probs=106.5
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc---eeEe-eehhhh----------
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG---SSFL-ANVREI---------- 255 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~-~~~~~~---------- 255 (1011)
...++||-+.-++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+-..... .|-. ...+..
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 4467899999999999888643 224567899999999999999999865321100 0000 000000
Q ss_pred ---hccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEE
Q 001805 256 ---SKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIII 330 (1011)
Q Consensus 256 ---~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIi 330 (1011)
....+... .++++..... .-..+++-++|+|+++... ....++..+......+.+|+
T Consensus 93 i~~~~~~~vd~-ir~l~~~~~~-----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 93 VDAASNTQVDA-MRELLDNAQY-----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred eeccccCCHHH-HHHHHHHHhh-----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 00011111 1111111100 0013456789999998653 35566555544345666666
Q ss_pred EeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 001805 331 TSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL-ALKVL 396 (1011)
Q Consensus 331 TTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 396 (1011)
+|.+. .+... ......+++++++.++..+.+.+.+-..... ..++....|++.++|.+- |+..+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 66443 23211 1123578999999999998887765332221 224556778999999775 44333
No 112
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00021 Score=85.06 Aligned_cols=196 Identities=16% Similarity=0.204 Sum_probs=110.1
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc---eeEeeehhhhhccCChHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG---SSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~l~~l~ 265 (1011)
....++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-..... ..-+. ..+...-.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-------~cg~c~~C 92 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-------LCGVGEHC 92 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-------cCcccHHH
Confidence 34578999999999999988754 234678899999999999999999865432210 00000 00000001
Q ss_pred HHHHHHH----hC---CCCCCccccccchHHHHhh-hcCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEe-CC
Q 001805 266 KQLLSQL----LK---LPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITS-RD 334 (1011)
Q Consensus 266 ~~ll~~l----~~---~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~ 334 (1011)
+.+.... .. .......++.+.++.+... ...++-++|+|+++... ..+.|+..+......+.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 1111100 00 0000111111111111111 12345578999996543 4566665554445666766555 33
Q ss_pred chhhhcc-CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 335 KHLLMTH-GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 335 ~~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
..+.... .....+++..++.++....+.+.+-..... -..+....|++.++|.+.-+.
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 3333221 224578999999999999988776433222 124667789999999886443
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00017 Score=84.86 Aligned_cols=195 Identities=12% Similarity=0.140 Sum_probs=109.8
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
...++||-+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+-...... ....+.....+.+.
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~i~ 83 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRKVT 83 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHHHh
Confidence 4467899888888888888643 2246788999999999999999998653211000 00000000001110
Q ss_pred HHHhCCCCCCcccc----ccchHH---HHhh-----hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCC-
Q 001805 270 SQLLKLPNNGIWNV----YDGINI---IGSR-----LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRD- 334 (1011)
Q Consensus 270 ~~l~~~~~~~~~~~----~~~~~~---l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~- 334 (1011)
. ....+...+ ...++. +.+. ..+++-+||+|+++.. +....|+..+........+|++|.+
T Consensus 84 ~----g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 84 Q----GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred c----CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 0 000000000 001111 1111 2345678999999764 4456666555433345566665554
Q ss_pred chhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCc-hHHHHHHHHh
Q 001805 335 KHLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLP-LALKVLGSFL 400 (1011)
Q Consensus 335 ~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~~~~~L 400 (1011)
..+... ......+++++++.++..+.+...+...... -..+.+..|++.++|.+ .|+..+...+
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333322 1223578999999999998888766443321 12466778899999865 5666665433
No 114
>PF14516 AAA_35: AAA-like domain
Probab=98.03 E-value=0.0014 Score=73.12 Aligned_cols=204 Identities=12% Similarity=0.155 Sum_probs=114.5
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc-CCceeEeeehhhhhc--cCChHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-FEGSSFLANVREISK--EGGLISL 264 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~--~~~l~~l 264 (1011)
+...+..|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+..... |.. +++ ++..... .......
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~-v~i-d~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRC-VYI-DLQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEE-EEE-EeecCCCcccCCHHHH
Confidence 44556788999555555555543 13589999999999999999998877543 333 233 3333222 2344544
Q ss_pred HHHHHHHHh---CCCCC-------CccccccchHHHHhhh---cCCcEEEEEccCCCHHH----HHHHh-------cCCC
Q 001805 265 QKQLLSQLL---KLPNN-------GIWNVYDGINIIGSRL---HHKKVLLLIDDVVDIKQ----LECLA-------GKRE 320 (1011)
Q Consensus 265 ~~~ll~~l~---~~~~~-------~~~~~~~~~~~l~~~L---~~k~~LlVlDdv~~~~~----~~~l~-------~~~~ 320 (1011)
.+.++..+. +.... ...........+.+.+ ..++.+|+||+|+..-. .+.+. ....
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 444444432 21110 0111122233344432 26899999999975321 11111 1111
Q ss_pred CCCC-Cc-eE-EEEeCCchhhhc-----cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 321 WFGP-GS-RI-IITSRDKHLLMT-----HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 321 ~~~~-gs-~I-IiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
.... .. ++ ++.+........ ......++|++++.+|...|...+... ...+..++|...+||+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHH
Confidence 0011 11 12 222211111110 123457899999999999998776422 1123388899999999999
Q ss_pred HHHHHHHhcC
Q 001805 393 LKVLGSFLYG 402 (1011)
Q Consensus 393 l~~~~~~L~~ 402 (1011)
+..++..+..
T Consensus 236 v~~~~~~l~~ 245 (331)
T PF14516_consen 236 VQKACYLLVE 245 (331)
T ss_pred HHHHHHHHHH
Confidence 9999988865
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00037 Score=85.74 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=105.4
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC-----CceeEeeehhhhhcc-CChHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF-----EGSSFLANVREISKE-GGLIS 263 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~~-~~l~~ 263 (1011)
....+||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-... .+...- ..+.+... .+-.+
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~-sC~~~~~g~~~~~d 90 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD-SCVALAPGGPGSLD 90 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH-HHHHHHcCCCCCCc
Confidence 4467999999999999998753 2346788999999999999999998763211 110000 00000000 00000
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHH-HhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-hhhh
Q 001805 264 LQKQLLSQLLKLPNNGIWNVYDGINII-GSRLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-HLLM 339 (1011)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~~l-~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~ 339 (1011)
+. .+-......+.++.++...+ ..-..+++-++|||+++.. ...+.|+..+......+.+|++|.+. .+..
T Consensus 91 v~-----eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 91 VT-----EIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred EE-----EecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00 00000000000111111100 0112345567899999764 34556665555445666666655433 3433
Q ss_pred c-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 340 T-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 340 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
. ......|++..++.++..+.+.+.+-..... -..+....|++.++|.+.
T Consensus 166 TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 166 TIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred HHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 2 2234688999999999988887765322221 124456778999999874
No 116
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.98 E-value=6.6e-05 Score=80.97 Aligned_cols=154 Identities=15% Similarity=0.177 Sum_probs=81.8
Q ss_pred ccccccchhHHHHHHHhh----------c---CCCCceEEEEEecCCchhHHHHHHHHHHhhcc--CCceeEeeehhhhh
Q 001805 192 KNLVGIDSHLKNLRLLMD----------K---GSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--FEGSSFLANVREIS 256 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~----------~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~ 256 (1011)
..++|.+...++|.+... . ..+...-+.++|++|+||||+|+.+++.+... .....++. +..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 357888877766654322 1 11234568899999999999999998865321 11112221 000
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCC----------HHHHHHHhcCCCCCCCCc
Q 001805 257 KEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVD----------IKQLECLAGKREWFGPGS 326 (1011)
Q Consensus 257 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs 326 (1011)
.. +.....+.. .......+... ..-+|++|+++. .+.++.+...........
T Consensus 83 -----~~----l~~~~~g~~------~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 -----AD----LVGEYIGHT------AQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred -----HH----hhhhhccch------HHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 00 111111100 00011122211 234889999975 234566665554333344
Q ss_pred eEEEEeCCchhhh------c--cCcCcEEEcCCCCHHHHHHHHHHHhh
Q 001805 327 RIIITSRDKHLLM------T--HGVDEVYKLRELHDDNALRLFCKKAF 366 (1011)
Q Consensus 327 ~IIiTTR~~~~~~------~--~~~~~~~~l~~L~~~ea~~Lf~~~a~ 366 (1011)
.+|+++.....-. . ......+.+++++.+|-.+++.+.+-
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5556654332200 0 11234688999999999999887763
No 117
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00049 Score=82.76 Aligned_cols=195 Identities=16% Similarity=0.132 Sum_probs=109.0
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
..+.+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.......-. ...+.....+.+.
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~ 84 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIA 84 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHh
Confidence 3468999999999998888654 234667899999999999999999876321110000 0000011111111
Q ss_pred HHHh----CCCCCCccccccchHHHHhh-----hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-hh
Q 001805 270 SQLL----KLPNNGIWNVYDGINIIGSR-----LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-HL 337 (1011)
Q Consensus 270 ~~l~----~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~ 337 (1011)
.... ..........++ +..+.+. ...++-++|+|+++.. +..+.|+..+......+.+|++|.+. .+
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKV 163 (585)
T ss_pred cCCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhh
Confidence 1000 000000000011 1111111 1245668999999754 44666665554434566666666443 33
Q ss_pred hhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 338 LMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 338 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
... ......+++..++.++....+.+.+....... ..+.+..+++.++|.+..+...
T Consensus 164 l~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i--~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 164 PATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL--EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 221 12235788999999999988877764433221 2466778999999988654443
No 118
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.98 E-value=3e-07 Score=98.88 Aligned_cols=65 Identities=29% Similarity=0.360 Sum_probs=36.6
Q ss_pred CCCCCCeeecCCCCCCCC-CCCcccCCccCCcEEECCCCCCe------ecCccccCCCCCCEEEEcCCcCcc
Q 001805 719 GLWSLRKLDLSDCDLGEG-AIPNDIGNLWSLEELYLSKNSFV------TAPASINRLFNLEELELEDCKRLQ 783 (1011)
Q Consensus 719 ~l~~L~~L~Ls~~~l~~~-~~p~~l~~l~~L~~L~L~~n~l~------~lp~~i~~l~~L~~L~L~~c~~L~ 783 (1011)
+++.|+.|++..|.+... .+...-.+++.|+.|.|++|... .+..+-..+..|+.|.|++|+.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 456677777777654321 12223345667777777766332 122333455667777777777554
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.4e-07 Score=96.65 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=34.1
Q ss_pred CccCCcEEECCCCCC-e-ecCccccCCCCCCEEEEcCCcCccc--cC--CCCCCccEEeecCCCc
Q 001805 744 NLWSLEELYLSKNSF-V-TAPASINRLFNLEELELEDCKRLQS--MP--QLPPNIKEVGVNGCAS 802 (1011)
Q Consensus 744 ~l~~L~~L~L~~n~l-~-~lp~~i~~l~~L~~L~L~~c~~L~~--lp--~lp~~L~~L~l~~c~~ 802 (1011)
.+|+|..|+|++|.. + .....+.+++.|++|.++.|-.+-. +- .--|+|.+|++.||-+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 456666666666532 2 2233456677777777777764421 00 1126788888888743
No 120
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00041 Score=82.71 Aligned_cols=195 Identities=12% Similarity=0.104 Sum_probs=105.5
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--CCceeEeeehhhhhccCChHHHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--FEGSSFLANVREISKEGGLISLQKQ 267 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~l~~l~~~ 267 (1011)
....+||-+.-++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. .+...|.... ....+.....+.
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~---~~~Cg~C~sC~~ 89 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV---TEPCGECESCRD 89 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc---CCCCccCHHHHH
Confidence 4578999999999999888643 234668899999999999999999865321 1101111100 000011111111
Q ss_pred HHHHH-hC---CCCCCccccccchHHHHhhh-----cCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEe-CCc
Q 001805 268 LLSQL-LK---LPNNGIWNVYDGINIIGSRL-----HHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITS-RDK 335 (1011)
Q Consensus 268 ll~~l-~~---~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~~ 335 (1011)
+...- .. ........+++.. .+.+.+ .+++-++|+|+++... ..+.|+..+..-...+.+|++| +..
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 11000 00 0000000011111 111111 2445578999997653 3556665554434455655555 433
Q ss_pred hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 336 HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 336 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
.+... .....++++.+++.++....+.+.+-..... -..+.+..+++.++|..-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 34322 2335689999999999888877655332211 124667789999999654
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.96 E-value=0.00011 Score=90.90 Aligned_cols=152 Identities=13% Similarity=0.140 Sum_probs=86.7
Q ss_pred cccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC------CceeEeeehhhhhccCChHHH
Q 001805 191 LKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF------EGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~l~~l 264 (1011)
.+.++||+.+++++.+.|... ...-+.++|++|+|||++|+.+++++...- ...+|..+..........
T Consensus 181 l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~--- 255 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKY--- 255 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccc---
Confidence 357999999999999888643 233467999999999999999999874431 233443322221100000
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhhh-cCCcEEEEEccCCCH-----------HHHHHHhcCCCCCCCC-ceEEEE
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSRL-HHKKVLLLIDDVVDI-----------KQLECLAGKREWFGPG-SRIIIT 331 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-s~IIiT 331 (1011)
..+..+.+..+.+.+ ..++.+|++|+++.. +.-+.+.+.+ ..| -++|-+
T Consensus 256 ---------------~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~Iga 317 (731)
T TIGR02639 256 ---------------RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGS 317 (731)
T ss_pred ---------------cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEe
Confidence 001111111222222 245789999998633 1223334433 233 344544
Q ss_pred eCCchhhh------c-cCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 332 SRDKHLLM------T-HGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 332 TR~~~~~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
|...+... . ......+++++++.++..+++....
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 44322100 0 1123578999999999999998654
No 122
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.96 E-value=0.00011 Score=76.67 Aligned_cols=185 Identities=16% Similarity=0.182 Sum_probs=111.4
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhh--ccCCceeEeeehhhhhccCChHHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTS--HKFEGSSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~l~~l~ 265 (1011)
|...+.++|-+..++.|...+.. ........+|++|.|||+-|++++..+- +-|++++.-.+. +...|..-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lna---SderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNA---SDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcc---cccccccchh
Confidence 34457889999999999888864 5667889999999999999999988653 345555442222 2222221111
Q ss_pred HH--HHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-hhhhc
Q 001805 266 KQ--LLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-HLLMT 340 (1011)
Q Consensus 266 ~~--ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~ 340 (1011)
.. -.+++..... .....-...--.+|||+++.. +.|..+......+...+|.|+.+-.- .+...
T Consensus 107 ~Kik~fakl~~~~~-----------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~p 175 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLK-----------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRP 175 (346)
T ss_pred hhhcCHHHHhhccc-----------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChH
Confidence 00 0111110000 000000111247899999875 45888877777667777765544332 22111
Q ss_pred -cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCc
Q 001805 341 -HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 341 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlP 390 (1011)
.....-+..++|.+++...-+...+-.+..+-+ .+..+.|++.++|--
T Consensus 176 i~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 176 LVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDL 224 (346)
T ss_pred HHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcH
Confidence 112245788999999999888888755444333 466788999998853
No 123
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00027 Score=81.80 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=92.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCc--eeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEG--SSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS 292 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 292 (1011)
..-+.|+|.+|+|||+||+++++.+....+. +.|+. . .++..++...+... ....+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~~~~~~~~----------~~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDLVDSMKEG----------KLNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHHHHHHhcc----------cHHHHHH
Confidence 4459999999999999999999987665432 34443 1 22333444332110 1223344
Q ss_pred hhcCCcEEEEEccCCCH---H----HHHHHhcCCCCCCCCceEEEEeC-Cchhh--------hccCcCcEEEcCCCCHHH
Q 001805 293 RLHHKKVLLLIDDVVDI---K----QLECLAGKREWFGPGSRIIITSR-DKHLL--------MTHGVDEVYKLRELHDDN 356 (1011)
Q Consensus 293 ~L~~k~~LlVlDdv~~~---~----~~~~l~~~~~~~~~gs~IIiTTR-~~~~~--------~~~~~~~~~~l~~L~~~e 356 (1011)
..+.+.-+|++||++.. . .+-.+...+. ..|..||+||. ...-+ .......++++++.+.++
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 44445568999999643 1 1212221111 23557888885 33221 112234578999999999
Q ss_pred HHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 357 ALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 357 a~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
-.+++.+.+-..... -.+++...|++.+.|.--.+.
T Consensus 268 r~~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 268 RKKIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHHH
Confidence 999998887432221 225677888888887655444
No 124
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.95 E-value=0.00073 Score=78.00 Aligned_cols=179 Identities=17% Similarity=0.142 Sum_probs=99.3
Q ss_pred ccccchhHH--HHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc--eeEeeehhhhhccCChHHHHHHHH
Q 001805 194 LVGIDSHLK--NLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG--SSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 194 ~vGr~~~l~--~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
++|.+.... .+.++..........+.|+|.+|+|||+||+++++.+..+.+. ++|+. . ..+..++.
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~~ 182 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDFV 182 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHHH
Confidence 457665532 2233332222223568899999999999999999987665432 33432 1 12223333
Q ss_pred HHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----HHHHHhcCCCC-CCCCceEEEEeCCc-hh------
Q 001805 270 SQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----QLECLAGKREW-FGPGSRIIITSRDK-HL------ 337 (1011)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~-~~------ 337 (1011)
..+... ....+.+.+++ .-+|||||++... ..+.+...++. ...|..+|+||... ..
T Consensus 183 ~~~~~~----------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 183 NALRNN----------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred HHHHcC----------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhh
Confidence 332211 12333444433 3478899996421 11222221111 12355688887642 11
Q ss_pred --hhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHH
Q 001805 338 --LMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKV 395 (1011)
Q Consensus 338 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 395 (1011)
...+....++.+++.+.++-.+++...+-..... -.+++...|++.+.|..-.+.-
T Consensus 252 ~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 252 RLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred hhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHH
Confidence 1122223468999999999999998887443222 2356777788888887664443
No 125
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.0011 Score=77.37 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=108.2
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc-cCCc--eeEee-ehhh----------
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH-KFEG--SSFLA-NVRE---------- 254 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~--~~~~~-~~~~---------- 254 (1011)
.....+||-+.-.+.|...+..+ .-.++..++|+.|+||||+|+.+++.+-. .... .|... ..+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 34567999998889999888654 23457789999999999999999886531 1110 01100 0000
Q ss_pred -h--hccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceE
Q 001805 255 -I--SKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRI 328 (1011)
Q Consensus 255 -~--~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 328 (1011)
. ....++..+.. ++.. .... ..+++-++|+|+++.. +..+.|+..+....+.+++
T Consensus 90 eldaas~~gId~IRe-lie~------------------~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 90 EMDAASNRGIDDIRE-LIEQ------------------TKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred EeccccccCHHHHHH-HHHH------------------HhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 0 00011111111 1111 0000 1134568899999764 3456666555544567777
Q ss_pred EEEeCCch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 329 IITSRDKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 329 IiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
|++|.+.. +... ......+++.+++.++..+.+.+.+-...... .++.++.|++.++|.+--+.
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i--~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY--EPEALEILARSGNGSLRDTL 216 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHH
Confidence 77776642 2111 12245789999999999998877664332221 24667789999999885433
No 126
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1.3e-06 Score=101.18 Aligned_cols=187 Identities=24% Similarity=0.276 Sum_probs=120.7
Q ss_pred eeeeCCCCCCCcCcccccCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceeccccccc
Q 001805 584 TWNLSGLLKFSNFPEIMTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSK 663 (1011)
Q Consensus 584 ~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~ 663 (1011)
.++++.+ .+...-..+..+++|..|++.+|.|..+...+..+++|++|++++|. ++.+. .+..++.|+.|++++|.
T Consensus 76 ~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~- 151 (414)
T KOG0531|consen 76 ELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNL- 151 (414)
T ss_pred hhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccCc-
Confidence 3555544 33333334667788999999999999888778888999999999875 55554 45677779999999854
Q ss_pred CCcCCcccCCCCCCcEEEcCCCCCCCCCC--CCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcc
Q 001805 664 LKNVPENLGKVESLEVLELSGCKGPPVSS--SWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPND 741 (1011)
Q Consensus 664 l~~lp~~l~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 741 (1011)
+..++ .+..+.+|+.+++++|.+..... ...+..++.+.++.+..... ..+..+..+..+++..|.+.. -..
T Consensus 152 i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~---~~~ 225 (414)
T KOG0531|consen 152 ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK---LEG 225 (414)
T ss_pred chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee---ccC
Confidence 44443 35568888999999888833222 45666666666555444321 112233344444666665532 122
Q ss_pred cCCccC--CcEEECCCCCCeecCccccCCCCCCEEEEcCCc
Q 001805 742 IGNLWS--LEELYLSKNSFVTAPASINRLFNLEELELEDCK 780 (1011)
Q Consensus 742 l~~l~~--L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 780 (1011)
+..+.. |+.+++++|.+..++..+..+.++..|++.++.
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 223333 788888888887776667777778888777654
No 127
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=5.8e-07 Score=94.72 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=65.9
Q ss_pred cccCCCCCeeeeCCCCCCC----cCcccccCcchhhhcccCCc----cccccCcc-------cCCCCCCcEEeecCCCCC
Q 001805 576 ISALKYHPTWNLSGLLKFS----NFPEIMTNMEHVLELHLEGT----AIRGLPIS-------IELFSGLVLLNLRDCKNL 640 (1011)
Q Consensus 576 l~~L~~L~~L~L~~~~~l~----~lp~~~~~l~~L~~L~L~~~----~i~~lp~s-------i~~L~~L~~L~L~~c~~l 640 (1011)
+.....++.++|+||+.-. .+-..+.+.++|+.-+++.- -..++|.. +...++|++|+|++|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3445566679999986433 23445566667777777642 11224433 445668999999988643
Q ss_pred cccC----cccccccccceecccccccCCc-------------CCcccCCCCCCcEEEcCCCCC
Q 001805 641 LSLP----CTINGLKSLKKLYLSGCSKLKN-------------VPENLGKVESLEVLELSGCKG 687 (1011)
Q Consensus 641 ~~lp----~~i~~l~~L~~L~l~~c~~l~~-------------lp~~l~~l~~L~~L~l~~~~~ 687 (1011)
..-+ .-|.++++|++|+|.+|..-.. .-...++-+.|+.+....|..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3322 2355678888898888754211 111233445666666666654
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.93 E-value=0.00013 Score=90.78 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=103.7
Q ss_pred HHHHHHhhcccCCCccccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC------Cc
Q 001805 172 FILEVVKVISSKSPIISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF------EG 245 (1011)
Q Consensus 172 ~i~~iv~~~~~~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~ 245 (1011)
.+++...+...+ ..+...+.+|||+.++.++...|... ...-+.++|.+|+||||+|+.+++++.... ..
T Consensus 169 ~l~~~~~~L~~~--~r~~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~ 244 (852)
T TIGR03345 169 ALDQYTTDLTAQ--AREGKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNV 244 (852)
T ss_pred hHHHHhhhHHHH--hcCCCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCC
Confidence 444444444433 11223467999999999999888643 223467999999999999999999875432 12
Q ss_pred eeEeeehhhhhcc----CChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH-------HHH-
Q 001805 246 SSFLANVREISKE----GGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK-------QLE- 313 (1011)
Q Consensus 246 ~~~~~~~~~~~~~----~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------~~~- 313 (1011)
.+|..++...... .....-.++++.. +.+ .+++++|++|+++... +.+
T Consensus 245 ~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e------------------~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~ 304 (852)
T TIGR03345 245 RLLSLDLGLLQAGASVKGEFENRLKSVIDE------------------VKA--SPQPIILFIDEAHTLIGAGGQAGQGDA 304 (852)
T ss_pred eEEEeehhhhhcccccchHHHHHHHHHHHH------------------HHh--cCCCeEEEEeChHHhccCCCccccccH
Confidence 2333222221110 1111111122211 111 2468999999986542 111
Q ss_pred --HHhcCCCCCCCC-ceEEEEeCCchhhhc-------cCcCcEEEcCCCCHHHHHHHHHHHhh--ccCCCCccHHHHHHH
Q 001805 314 --CLAGKREWFGPG-SRIIITSRDKHLLMT-------HGVDEVYKLRELHDDNALRLFCKKAF--KTHQPKKGYEQLSEW 381 (1011)
Q Consensus 314 --~l~~~~~~~~~g-s~IIiTTR~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a~--~~~~~~~~~~~l~~~ 381 (1011)
.|.+.+ ..| -++|-||........ .....++.|++++.+++.+++....- ...+...-..+....
T Consensus 305 ~n~Lkp~l---~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~ 381 (852)
T TIGR03345 305 ANLLKPAL---ARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVA 381 (852)
T ss_pred HHHhhHHh---hCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHH
Confidence 233433 233 455655554322100 11235899999999999999754432 111211122445556
Q ss_pred HHHHhCCC
Q 001805 382 VTKYSGGL 389 (1011)
Q Consensus 382 i~~~~~Gl 389 (1011)
+++.+.+.
T Consensus 382 ~~~ls~ry 389 (852)
T TIGR03345 382 AVELSHRY 389 (852)
T ss_pred HHHHcccc
Confidence 66666654
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00067 Score=81.24 Aligned_cols=196 Identities=16% Similarity=0.191 Sum_probs=107.0
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhc----cCChHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISK----EGGLISL 264 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~----~~~l~~l 264 (1011)
.....+||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-. ...+.. ..++.
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLDII-- 90 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCcEE--
Confidence 34567899999999999988753 23567889999999999999999886532111000000 000000 00000
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEe-CCchhhhc
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITS-RDKHLLMT 340 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~~~~~~~ 340 (1011)
.+-+.......++.++.+.+... ..+++-++|+|+++.. ..+..|+..+........+|++| +...+...
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000000000111111111111 1245668899999754 34666665554434455555444 44444322
Q ss_pred -cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch-HHHHH
Q 001805 341 -HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL-ALKVL 396 (1011)
Q Consensus 341 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~ 396 (1011)
......+++.+++.++..+.+...+-..... -..+.++.+++.++|.+- |+..+
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234588999999999998887765332221 124557789999988764 44433
No 130
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.92 E-value=9.5e-06 Score=65.75 Aligned_cols=58 Identities=40% Similarity=0.539 Sum_probs=50.0
Q ss_pred CCCCeeecCCCCCCCCCCC-cccCCccCCcEEECCCCCCeecC-ccccCCCCCCEEEEcCCc
Q 001805 721 WSLRKLDLSDCDLGEGAIP-NDIGNLWSLEELYLSKNSFVTAP-ASINRLFNLEELELEDCK 780 (1011)
Q Consensus 721 ~~L~~L~Ls~~~l~~~~~p-~~l~~l~~L~~L~L~~n~l~~lp-~~i~~l~~L~~L~L~~c~ 780 (1011)
++|+.|++++|++.. +| ..+..+++|+.|+|++|.+..+| ..+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999998854 55 57889999999999999999886 578999999999999985
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0016 Score=76.07 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=106.2
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc-----CCceeEeeehhhhhcc--CChH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-----FEGSSFLANVREISKE--GGLI 262 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~--~~l~ 262 (1011)
....++|-+.-++.|...+..+ .-.++..++|+.|+||||+|+.++..+-.. .++... .+...+... .++.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDLI 91 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcEE
Confidence 4467899999999999998753 234667889999999999999998865311 111100 000000000 0000
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHhh-----hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEe-CC
Q 001805 263 SLQKQLLSQLLKLPNNGIWNVYDGINIIGSR-----LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITS-RD 334 (1011)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~ 334 (1011)
. +-........+ +..+.+. ..+++-++|+|+++.. +..+.|...+....+...+|++| +.
T Consensus 92 e--------idaas~~gvd~----ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 92 E--------IDAASNRGIDD----IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred E--------EeCccCCCHHH----HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 0 00000000000 1112111 1345669999999754 34556655554434455565555 33
Q ss_pred chhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 335 KHLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 335 ~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
..+... ......+++.+++.++....+...+-..... -..+.+..+++.++|.+..+...
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 333221 1223578999999999998887766432221 22456677889999987644433
No 132
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.91 E-value=0.00012 Score=81.58 Aligned_cols=150 Identities=15% Similarity=0.188 Sum_probs=87.0
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQ 267 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ 267 (1011)
|.....++|.+...+.+..++..+ .-..++.++|++|+|||++|+++++.....+ ..+. . .. .....+. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~---~~-~~~~~i~-~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-G---SD-CRIDFVR-N 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-c---Cc-ccHHHHH-H
Confidence 445578999999999999988743 2356777899999999999999988763322 2222 1 11 1111111 1
Q ss_pred HHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH---HHHHHHhcCCCCCCCCceEEEEeCCchhh-hc-cC
Q 001805 268 LLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI---KQLECLAGKREWFGPGSRIIITSRDKHLL-MT-HG 342 (1011)
Q Consensus 268 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IIiTTR~~~~~-~~-~~ 342 (1011)
.+....... .+...+-+||+||++.. +..+.+...+.....++++|+||...... .. ..
T Consensus 87 ~l~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 87 RLTRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 111111000 01134557899999755 22233333333335677899888654321 11 11
Q ss_pred cCcEEEcCCCCHHHHHHHHHH
Q 001805 343 VDEVYKLRELHDDNALRLFCK 363 (1011)
Q Consensus 343 ~~~~~~l~~L~~~ea~~Lf~~ 363 (1011)
....+.++..+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 224677778888888766543
No 133
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.90 E-value=1.5e-05 Score=75.76 Aligned_cols=91 Identities=22% Similarity=0.344 Sum_probs=49.3
Q ss_pred ccEEEccccCcCccchHHHHHHHHHhC-------CCeE----------EecCCcCCCCCcchHHHHHHHHhcceEEEEec
Q 001805 19 YDVFLSFRGVDTRKNFTDHLYTALDQK-------GIIV----------FRDDKELERGESISPGLFKAIEESKISIIVFS 81 (1011)
Q Consensus 19 ~dvfis~~~~d~~~~~~~~l~~~L~~~-------g~~~----------~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s 81 (1011)
|+|||||++.|. ...++.|.+.+... .+.. +.+..+....+.|...|.++|.+|+++||++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 689999999884 23777788777773 2211 12222333455889999999999999999999
Q ss_pred CCcccCcchHHHHHHHHHHHhhCCCceEEEEEee
Q 001805 82 RNYACSTWCLDELVHILECKNKNHQQMVYPIFYD 115 (1011)
Q Consensus 82 ~~y~~s~~c~~El~~~~~~~~~~~~~~v~pvf~~ 115 (1011)
++-..|+|+-.|+..+++ .+ ..|+-|..+
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~-~~Ii~V~~~ 108 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KG-KPIIGVYLP 108 (130)
T ss_dssp TT----HHHHHHHHHHTT----T----EEEEETT
T ss_pred CCcccCcHHHHHHHHHHH----CC-CCEEEEECC
Confidence 999999999999999876 33 567777643
No 134
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.87 E-value=0.00061 Score=79.67 Aligned_cols=178 Identities=16% Similarity=0.173 Sum_probs=100.3
Q ss_pred ccccchhH--HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc--eeEeeehhhhhccCChHHHHHHHH
Q 001805 194 LVGIDSHL--KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG--SSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 194 ~vGr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
.+|...+. ....++..........+.|+|.+|+|||+||+++++.+..+++. +.|+. .. .+..++.
T Consensus 125 v~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~---------~~~~~~~ 194 (450)
T PRK00149 125 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SE---------KFTNDFV 194 (450)
T ss_pred ccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HH---------HHHHHHH
Confidence 44655543 22333332222234568999999999999999999988776533 23433 11 1222333
Q ss_pred HHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----HHHHHhcCCCC-CCCCceEEEEeCCch--------
Q 001805 270 SQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----QLECLAGKREW-FGPGSRIIITSRDKH-------- 336 (1011)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~-------- 336 (1011)
..+.. .....+.+.++ +.-+|||||++... ..+.+...++. ...|..||+||....
T Consensus 195 ~~~~~----------~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 195 NALRN----------NTMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred HHHHc----------CcHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHH
Confidence 33211 01233344444 34588999995421 12222221110 123556888876542
Q ss_pred -hhhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 337 -LLMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 337 -~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
+........++++++.+.++-.+++...+-... ..-.+++...|++.+.|..-.+.
T Consensus 264 ~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 264 RLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG--IDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHHHH
Confidence 112233345789999999999999988874322 12235677888888888766444
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0003 Score=81.53 Aligned_cols=194 Identities=14% Similarity=0.136 Sum_probs=104.9
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC---Cc-eeEe-eehhhhhccCChHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF---EG-SSFL-ANVREISKEGGLIS 263 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~~-~~~~-~~~~~~~~~~~l~~ 263 (1011)
....+++|.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..- +. .|-. .+.+.........
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 34568999999999999988643 2246788999999999999999998653220 00 0000 0000000000000
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCC-chhhh
Q 001805 264 LQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRD-KHLLM 339 (1011)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~~~~ 339 (1011)
...+.+.......++.+....+.. ...+++-++|+|+++.. +..+.|...+........+|++|.. ..+..
T Consensus 92 -----~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 92 -----VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred -----eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 000000000000000000111100 01245678899998754 3455555554443456666666633 33322
Q ss_pred c-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 340 T-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 340 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
. ......+++.+++.++..+.+...+-+.... -..+.+..++++++|.+-
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLR 217 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 2 1234578999999999988887765332211 224667789999999764
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.0013 Score=77.92 Aligned_cols=197 Identities=16% Similarity=0.153 Sum_probs=109.8
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc-----CCceeEeeehhhhhccCChH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-----FEGSSFLANVREISKEGGLI 262 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~l~ 262 (1011)
|....++||-+.-++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. .++... ...+.......+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C-~~C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC-SSCKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc-hHHHHHHcCCCCC
Confidence 334578999999999999998753 235678899999999999999999865321 111100 0001110000000
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHh-hhcCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCc-hhh
Q 001805 263 SLQKQLLSQLLKLPNNGIWNVYDGINIIGS-RLHHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDK-HLL 338 (1011)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~ 338 (1011)
+. .+.+.......++.+..+.+.. -..+++-++|+|+++... ..+.|+..+....+...+|++|.+. .+.
T Consensus 90 -v~-----~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 90 -VI-----EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred -eE-----EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 00 0000000000011011111111 113456689999997643 4667766665445566666666443 332
Q ss_pred hc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 339 MT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 339 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
.. ......+++.+++.++..+.+.+.+...... -.++.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 22 1223568999999999988887776443322 224667778999999875433
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00071 Score=81.17 Aligned_cols=195 Identities=16% Similarity=0.118 Sum_probs=107.4
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC-CceeEeeehhhhhccCChHHHHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF-EGSSFLANVREISKEGGLISLQKQ 267 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~l~~l~~~ 267 (1011)
.....++|.+.-.+.|..++..+. -.+.+.++|..|+||||+|+.++..+-... ..... ...+.....+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~--------~~Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP--------EPCGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC--------CCCcccHHHHH
Confidence 344678999999999999887542 235788999999999999999998764321 10000 00001111111
Q ss_pred HHHHHhCCCCCCc-cccccchHHHHhh--------hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-
Q 001805 268 LLSQLLKLPNNGI-WNVYDGINIIGSR--------LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK- 335 (1011)
Q Consensus 268 ll~~l~~~~~~~~-~~~~~~~~~l~~~--------L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~- 335 (1011)
+..... ..-... ......++.+++. ..+++-++|+|+++.. +..+.|+..+..-.....+|++|.+.
T Consensus 84 i~~g~h-~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 84 IAAGNA-LDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HhcCCC-ccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 111100 000000 0000111122211 1244568899999864 44666665554334455555555443
Q ss_pred hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHH
Q 001805 336 HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKV 395 (1011)
Q Consensus 336 ~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 395 (1011)
.+... ......+++..++.++....+.+.+-...... ..+.+..|++.++|.+..+..
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i--s~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI--EPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 33222 12345788889999998888777664322211 235677899999998764443
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.83 E-value=0.0001 Score=76.42 Aligned_cols=132 Identities=16% Similarity=0.071 Sum_probs=77.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH 295 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 295 (1011)
+.+.|+|++|+|||+|++++++.... .++... .. .. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~----~~-------------------------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FF----NE-------------------------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hh----ch-------------------------hHH-
Confidence 56899999999999999987765321 222100 00 00 001
Q ss_pred CCcEEEEEccCCCHHH--HHHHhcCCCCCCCCceEEEEeCCchh-------hhccCcCcEEEcCCCCHHHHHHHHHHHhh
Q 001805 296 HKKVLLLIDDVVDIKQ--LECLAGKREWFGPGSRIIITSRDKHL-------LMTHGVDEVYKLRELHDDNALRLFCKKAF 366 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 366 (1011)
+..-+|++||++...+ +-.+..... ..|..||+|++.... .......-+++++++++++-.+++.+.+-
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1224788999975433 222222211 346689999875422 12223344799999999998888877663
Q ss_pred ccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 367 KTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 367 ~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
.... .-.+++.+-|++++.|.--.
T Consensus 162 ~~~l--~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 162 ISSV--TISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HcCC--CCCHHHHHHHHHHccCCHHH
Confidence 2211 12246667777777665433
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.82 E-value=0.0002 Score=89.72 Aligned_cols=169 Identities=11% Similarity=0.124 Sum_probs=91.7
Q ss_pred HHHHHHhhcccCCCccccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc-C-----Cc
Q 001805 172 FILEVVKVISSKSPIISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-F-----EG 245 (1011)
Q Consensus 172 ~i~~iv~~~~~~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-----~~ 245 (1011)
..++...++..+. .....+.++||+.+++++.+.|... ...-+.++|++|+|||++|+.++.++... - ..
T Consensus 161 ~l~~~~~~l~~~a--~~~~~~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~ 236 (821)
T CHL00095 161 TLEEFGTNLTKEA--IDGNLDPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDK 236 (821)
T ss_pred HHHHHHHHHHHHH--HcCCCCCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 4455555544440 0112246899999999999999743 22346799999999999999999987532 1 23
Q ss_pred eeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccch-HHHHhhhcCCcEEEEEccCCCHH----------HHHH
Q 001805 246 SSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGI-NIIGSRLHHKKVLLLIDDVVDIK----------QLEC 314 (1011)
Q Consensus 246 ~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~-~~l~~~L~~k~~LlVlDdv~~~~----------~~~~ 314 (1011)
.+|..+......... . .....+.+ ..+.+....++.+|++|+++..- .-..
T Consensus 237 ~i~~l~~~~l~ag~~----------------~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l 298 (821)
T CHL00095 237 LVITLDIGLLLAGTK----------------Y--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI 298 (821)
T ss_pred eEEEeeHHHHhccCC----------------C--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH
Confidence 344333322111000 0 00111111 12222223568899999985321 1122
Q ss_pred HhcCCCCCCCCceEEEEeCCchhhh------c-cCcCcEEEcCCCCHHHHHHHHHHH
Q 001805 315 LAGKREWFGPGSRIIITSRDKHLLM------T-HGVDEVYKLRELHDDNALRLFCKK 364 (1011)
Q Consensus 315 l~~~~~~~~~gs~IIiTTR~~~~~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~ 364 (1011)
|.+.+. ...-++|.+|....... . ......+.++..+.++...++...
T Consensus 299 Lkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 299 LKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred hHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 222221 12245565555443211 0 122356789999999988887653
No 140
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.81 E-value=0.00016 Score=83.82 Aligned_cols=160 Identities=16% Similarity=0.243 Sum_probs=89.4
Q ss_pred cccccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccC-----CceeEeeehhh
Q 001805 191 LKNLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF-----EGSSFLANVRE 254 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~ 254 (1011)
...+.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +..
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~ 259 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKG 259 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccc
Confidence 35678899999988776531 112345689999999999999999999876542 2233432 111
Q ss_pred hhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCHH---------H-----HHHHhcCC
Q 001805 255 ISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDIK---------Q-----LECLAGKR 319 (1011)
Q Consensus 255 ~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~~---------~-----~~~l~~~~ 319 (1011)
. +++....+.. ...+.......+.. ..+++++|+||+++..- + +..++..+
T Consensus 260 ---~--------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 260 ---P--------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ---h--------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 0 0000000000 00000011111111 13578999999996431 1 22333333
Q ss_pred CCCC--CCceEEEEeCCchhh-----hccCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 320 EWFG--PGSRIIITSRDKHLL-----MTHGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 320 ~~~~--~gs~IIiTTR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
+... .+..||.||-....+ .....+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3222 244455566444322 112346678999999999999998876
No 141
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0022 Score=76.98 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=104.8
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc----eeEee-ehhh----------
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG----SSFLA-NVRE---------- 254 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~----~~~~~-~~~~---------- 254 (1011)
..+.+||-+...+.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..... .|=.. ..+.
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 3467999999999999988653 234678899999999999999998865311100 00000 0000
Q ss_pred ---hhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceE
Q 001805 255 ---ISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRI 328 (1011)
Q Consensus 255 ---~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~I 328 (1011)
.....+... .++++.++ ... ..+++-++|+|+++.. ...+.|...+......+.+
T Consensus 94 ~ld~~~~~~vd~-Ir~li~~~------------------~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 94 ELDAASNNSVDD-IRNLIEQV------------------RIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred EecccccCCHHH-HHHHHHHH------------------hhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 000011111 11111111 000 1234557899999764 3456666555444456666
Q ss_pred EEEe-CCchhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch
Q 001805 329 IITS-RDKHLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL 391 (1011)
Q Consensus 329 IiTT-R~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL 391 (1011)
|++| +...+... .....++++.+++.++....+...+-...... ..+.+..|++.++|..-
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i--~~~al~~La~~s~gdlr 217 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA--EPEALNVIAQKADGGMR 217 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 6555 44444332 22346899999999999988877664333221 24567789999998764
No 142
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.0011 Score=76.66 Aligned_cols=152 Identities=15% Similarity=0.096 Sum_probs=86.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH 295 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 295 (1011)
.-+.|+|+.|+|||+||+++++.+......+.|+. . ..+...+...+.. . ....++...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------~~f~~~~~~~l~~-~---------~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------ELFTEHLVSAIRS-G---------EMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H---------HHHHHHHHHHHhc-c---------hHHHHHHHcc
Confidence 56889999999999999999998765444445543 1 1222333333211 0 1223444333
Q ss_pred CCcEEEEEccCCCHH----HHHHHhcCCCC-CCCCceEEEEeCCc-h--------hhhccCcCcEEEcCCCCHHHHHHHH
Q 001805 296 HKKVLLLIDDVVDIK----QLECLAGKREW-FGPGSRIIITSRDK-H--------LLMTHGVDEVYKLRELHDDNALRLF 361 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~-~--------~~~~~~~~~~~~l~~L~~~ea~~Lf 361 (1011)
..-+|++||+.... ..+.+...++. ...|..||+||... . +........++++.+++.++-.+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 34578889985431 11222211110 02356788888542 1 1122233457899999999999999
Q ss_pred HHHhhccCCCCccHHHHHHHHHHHhCCCc
Q 001805 362 CKKAFKTHQPKKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 362 ~~~a~~~~~~~~~~~~l~~~i~~~~~GlP 390 (1011)
.+.+-.... .-.+++..-|++.+.+.-
T Consensus 281 ~~k~~~~~~--~l~~evl~~la~~~~~di 307 (445)
T PRK12422 281 ERKAEALSI--RIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCCH
Confidence 887743221 122455555666666543
No 143
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.78 E-value=0.00033 Score=79.47 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=97.8
Q ss_pred cccccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC
Q 001805 191 LKNLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG 259 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1011)
..++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- .+. ..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s------ 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GS------ 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH------
Confidence 45788999999888776541 1133577999999999999999999987644331 111 00
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------------HHHHHhcCCCCC-
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------------QLECLAGKREWF- 322 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 322 (1011)
.+.....+.. .......+.......+.+|++|+++... .+..++..++.+
T Consensus 214 -------~l~~k~~ge~------~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~ 280 (398)
T PTZ00454 214 -------EFVQKYLGEG------PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD 280 (398)
T ss_pred -------HHHHHhcchh------HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC
Confidence 0111111100 0001122222334678999999986421 122333322221
Q ss_pred -CCCceEEEEeCCchhhh-----ccCcCcEEEcCCCCHHHHHHHHHHHhhccCCC-CccHHHHHHHHHHHhCCCc
Q 001805 323 -GPGSRIIITSRDKHLLM-----THGVDEVYKLRELHDDNALRLFCKKAFKTHQP-KKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 323 -~~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~i~~~~~GlP 390 (1011)
..+..||.||...+.+. ....+..++++..+.++..++|..+.-+.... ..++ .++++.+.|.-
T Consensus 281 ~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 281 QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 23567888887554321 12346778999999999888887665332211 1223 34555666653
No 144
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.78 E-value=0.0024 Score=75.12 Aligned_cols=156 Identities=13% Similarity=0.173 Sum_probs=90.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCC--ceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFE--GSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
..+.|+|..|.|||.|++++++.....+. .+.|+. . ..+..++...+... ....++++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-a---------eef~~el~~al~~~----------~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-S---------EEFTNEFINSIRDG----------KGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-H---------HHHHHHHHHHHHhc----------cHHHHHHH
Confidence 45899999999999999999998765432 234443 1 22233333332110 12233344
Q ss_pred hcCCcEEEEEccCCCH---HHH-HHHhcCCCC-CCCCceEEEEeCCc---------hhhhccCcCcEEEcCCCCHHHHHH
Q 001805 294 LHHKKVLLLIDDVVDI---KQL-ECLAGKREW-FGPGSRIIITSRDK---------HLLMTHGVDEVYKLRELHDDNALR 359 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gs~IIiTTR~~---------~~~~~~~~~~~~~l~~L~~~ea~~ 359 (1011)
+++ .=+|||||++.. +.+ +.+...++. ...|..|||||+.. .+...+...-+++|...+.+.-.+
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 433 347889999543 111 222211111 13456788888753 122223445688999999999999
Q ss_pred HHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 360 LFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 360 Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
++.+++-..... -.+++..-|++.+.+..-.|.
T Consensus 454 IL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 454 ILRKKAVQEQLN--APPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHH
Confidence 998887443222 225677777777776644443
No 145
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.76 E-value=0.00041 Score=83.50 Aligned_cols=205 Identities=18% Similarity=0.142 Sum_probs=103.0
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc--cC---CceeEee-ehhhhhccCCh
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH--KF---EGSSFLA-NVREISKEGGL 261 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f---~~~~~~~-~~~~~~~~~~l 261 (1011)
|...+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+. +.... ..+.
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l--~~d~ 225 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL--RWDP 225 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc--cCCH
Confidence 34456799999999988777643 33457999999999999999999875432 11 1122321 11111 0111
Q ss_pred HHHHHHH---------------HHHHhCCCCC----------------Ccccc-ccchHHHHhhhcCCcEEEEEccCCCH
Q 001805 262 ISLQKQL---------------LSQLLKLPNN----------------GIWNV-YDGINIIGSRLHHKKVLLLIDDVVDI 309 (1011)
Q Consensus 262 ~~l~~~l---------------l~~l~~~~~~----------------~~~~~-~~~~~~l~~~L~~k~~LlVlDdv~~~ 309 (1011)
..+...+ +.. .+.... ....+ ......+.+.+.++++.++-|+.|..
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~-~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAE-TGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHH-cCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 1111111 110 000000 00000 11234445555556666665544332
Q ss_pred H--HHHHHhcCCCCCCCCceEEE--EeCCchhhh-cc-CcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHH
Q 001805 310 K--QLECLAGKREWFGPGSRIII--TSRDKHLLM-TH-GVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVT 383 (1011)
Q Consensus 310 ~--~~~~l~~~~~~~~~gs~IIi--TTR~~~~~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~ 383 (1011)
+ .|+.+...+....+...|+| ||++..... .. .....+.+.+++.+|..+++.+.+-.... .-.+++.+.|.
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v--~ls~eal~~L~ 382 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV--HLAAGVEELIA 382 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 2 23333333332233334444 566543211 11 12246788999999999999887643211 11244555666
Q ss_pred HHhCCCchHHHHHHHH
Q 001805 384 KYSGGLPLALKVLGSF 399 (1011)
Q Consensus 384 ~~~~GlPLal~~~~~~ 399 (1011)
+++..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6665445566655443
No 146
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.76 E-value=1.8e-05 Score=64.05 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=24.4
Q ss_pred hhhcccCCccccccCc-ccCCCCCCcEEeecCCCCCcccC-cccccccccceeccccc
Q 001805 606 VLELHLEGTAIRGLPI-SIELFSGLVLLNLRDCKNLLSLP-CTINGLKSLKKLYLSGC 661 (1011)
Q Consensus 606 L~~L~L~~~~i~~lp~-si~~L~~L~~L~L~~c~~l~~lp-~~i~~l~~L~~L~l~~c 661 (1011)
|++|++++|.+..+|. .+..+++|++|++++|. +..+| ..+.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 4444444444444443 23444455555554443 22222 23444444444444443
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0027 Score=75.64 Aligned_cols=188 Identities=13% Similarity=0.108 Sum_probs=105.5
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCC-ceeEeeehhhhhccCChHHHHH
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE-GSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
|.....+||.+...+.|...+..+. -.+...++|+.|+||||+|+.++..+-..-. ..- ..+.....+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~----------pC~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE----------PCNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC----------CCCccHHHH
Confidence 3445789999999999999987542 3567888999999999999999886532110 000 000000011
Q ss_pred HHHHHHhCCCCCCc----cccccchH---HHHhh-----hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEe
Q 001805 267 QLLSQLLKLPNNGI----WNVYDGIN---IIGSR-----LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITS 332 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~----~~~~~~~~---~l~~~-----L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT 332 (1011)
.+.. ....+. .......+ .+... ..+++-++|+|+++.. .....|+..+..-.....+|++|
T Consensus 81 ~i~~----g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlat 156 (559)
T PRK05563 81 AITN----GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILAT 156 (559)
T ss_pred HHhc----CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 1100 000000 00001111 11111 1345668899999754 44666665554334455555555
Q ss_pred -CCchhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 333 -RDKHLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 333 -R~~~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
....+... ......++..+++.++..+.+...+-...... ..+.+..|++.++|.+..
T Consensus 157 t~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRD 216 (559)
T ss_pred CChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 33333222 12245688999999999888877664332222 245677788888887753
No 148
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.73 E-value=9.1e-07 Score=95.22 Aligned_cols=253 Identities=20% Similarity=0.190 Sum_probs=134.3
Q ss_pred cceeEEecCCCCCCCCCC--CccCCCCCeeecccCCCCccccCc--ccccCCCCCeeeeCCCCCCCc--CcccccCcchh
Q 001805 533 CLSDLLLDGTDIKELPIL--PFELLSGLVQLNVEGCNKLERLPR--NISALKYHPTWNLSGLLKFSN--FPEIMTNMEHV 606 (1011)
Q Consensus 533 ~Lr~L~l~~~~~~~lp~~--~~~~l~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~L~~~~~l~~--lp~~~~~l~~L 606 (1011)
.|+.|.+.|+.-....++ ...+++++..|++.+|.+++.-.- --..++.|++|+|..|..+.. +......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 567777777653322221 125678888888888875543211 223456667788888765543 22233455666
Q ss_pred hhcccCCc-cccc--cCcccCCCCCCcEEeecCCCCCcc--cCcccccccccceecccccccCCcCC--cccCCCCCCcE
Q 001805 607 LELHLEGT-AIRG--LPISIELFSGLVLLNLRDCKNLLS--LPCTINGLKSLKKLYLSGCSKLKNVP--ENLGKVESLEV 679 (1011)
Q Consensus 607 ~~L~L~~~-~i~~--lp~si~~L~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~ 679 (1011)
++|+++++ .|++ +-.-...+++|+.+.+++|..++. +-..-+...-+.++++..|..+.... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 66666654 2332 111122333344444444432211 10001122223333433443332211 00112233344
Q ss_pred EEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCC-CCCCCCCCeeecCCCCC-CCCCCCcccCCccCCcEEECCCCC
Q 001805 680 LELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPS-LSGLWSLRKLDLSDCDL-GEGAIPNDIGNLWSLEELYLSKNS 757 (1011)
Q Consensus 680 L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~-l~~l~~L~~L~Ls~~~l-~~~~~p~~l~~l~~L~~L~L~~n~ 757 (1011)
|+. .+|.......+.. -.++.+|+.|.++.|.. ++..+..--.+.+.|+.|++.++.
T Consensus 299 l~~---------------------s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 299 LCY---------------------SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hcc---------------------cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 443 3444443333333 23567899999998863 322222233467899999999885
Q ss_pred Ce---ecCccccCCCCCCEEEEcCCcCccccC--------CCCCCccEEeecCCCccccc
Q 001805 758 FV---TAPASINRLFNLEELELEDCKRLQSMP--------QLPPNIKEVGVNGCASLEKL 806 (1011)
Q Consensus 758 l~---~lp~~i~~l~~L~~L~L~~c~~L~~lp--------~lp~~L~~L~l~~c~~L~~l 806 (1011)
.. ++-.--.+++.|++|.|++|..++... .-...|+.|.+++|+.++.-
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~ 417 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA 417 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence 43 233334578999999999998877651 22356888899999876543
No 149
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.72 E-value=0.00064 Score=85.10 Aligned_cols=150 Identities=12% Similarity=0.139 Sum_probs=85.3
Q ss_pred cccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC------CceeEeeehhhhhcc----CC
Q 001805 191 LKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF------EGSSFLANVREISKE----GG 260 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~----~~ 260 (1011)
.+.+|||+.++.++.+.|... ...-+.++|.+|+|||+||+.++.++.... ...++..++...... ..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~ 254 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE 254 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhh
Confidence 356999999999999988643 234567999999999999999999875432 223333322221100 01
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------HHHHHhcCCCCCCCC-ceEE
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------QLECLAGKREWFGPG-SRII 329 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~II 329 (1011)
...-.++++.. +. -..++++|++|+++... .-+-+.+.+ ..| -++|
T Consensus 255 ~e~~lk~~~~~------------------~~--~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---~~g~l~~I 311 (857)
T PRK10865 255 FEERLKGVLND------------------LA--KQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHCV 311 (857)
T ss_pred hHHHHHHHHHH------------------HH--HcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---hcCCCeEE
Confidence 11111111111 11 12468999999986542 223333333 233 3555
Q ss_pred EEeCCchhhh------c-cCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 330 ITSRDKHLLM------T-HGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 330 iTTR~~~~~~------~-~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
-||-...... . ......+.+...+.++..+++....
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5554433210 0 1122356777779999999886544
No 150
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.71 E-value=0.00019 Score=81.92 Aligned_cols=153 Identities=18% Similarity=0.244 Sum_probs=89.7
Q ss_pred ccccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCC
Q 001805 192 KNLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGG 260 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1011)
.++.|.+..+++|.+.+.. +-...+-|.++|++|.|||++|+++++.....|-. +.. .+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~~-se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VVG-SE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Eec-ch------
Confidence 5678999999999887742 11234678899999999999999999987654411 110 00
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------------HHHHHhcCCCCC--
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------------QLECLAGKREWF-- 322 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 322 (1011)
+ .....+.. .......+.....+.+.+|+||+++... .+..++..++.+
T Consensus 253 ---L----~~k~~Ge~------~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 253 ---L----IQKYLGDG------PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---h----hhhhcchH------HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 0 00100000 0001112222234567899999975321 122222222211
Q ss_pred CCCceEEEEeCCchhhhc-----cCcCcEEEcCCCCHHHHHHHHHHHhhc
Q 001805 323 GPGSRIIITSRDKHLLMT-----HGVDEVYKLRELHDDNALRLFCKKAFK 367 (1011)
Q Consensus 323 ~~gs~IIiTTR~~~~~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 367 (1011)
..+.+||.||.....+.. ...+..++++..+.++..++|..++.+
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 235678888875543321 234678899999999999999887643
No 151
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=6.9e-07 Score=91.75 Aligned_cols=160 Identities=24% Similarity=0.244 Sum_probs=95.3
Q ss_pred CcchhhhcccCCccccc-cCcccCCCCCCcEEeecCCCCCcccC--cccccccccceecccccccCCcCCcc-cCC-CCC
Q 001805 602 NMEHVLELHLEGTAIRG-LPISIELFSGLVLLNLRDCKNLLSLP--CTINGLKSLKKLYLSGCSKLKNVPEN-LGK-VES 676 (1011)
Q Consensus 602 ~l~~L~~L~L~~~~i~~-lp~si~~L~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~L~l~~c~~l~~lp~~-l~~-l~~ 676 (1011)
.+.+|+.|.|.++.+.. +-..|.+-.+|+.|||+.|..+++.. --+.+++.|..|+|+.|......-.. +.+ -++
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~ 287 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET 287 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence 34455566666655554 44446666778888888877665432 22456778888888887654322111 111 135
Q ss_pred CcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCC
Q 001805 677 LEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKN 756 (1011)
Q Consensus 677 L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n 756 (1011)
|..|+++|+.-.+..+ .+..| -..+++|..|||++|.......-..+..++.|++|.|+.|
T Consensus 288 l~~LNlsG~rrnl~~s-----h~~tL--------------~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 288 LTQLNLSGYRRNLQKS-----HLSTL--------------VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred hhhhhhhhhHhhhhhh-----HHHHH--------------HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 7777777764311100 11111 2346788888998886543334445667888999999988
Q ss_pred CCe--ecCccccCCCCCCEEEEcCCc
Q 001805 757 SFV--TAPASINRLFNLEELELEDCK 780 (1011)
Q Consensus 757 ~l~--~lp~~i~~l~~L~~L~L~~c~ 780 (1011)
..- +.--.+...|.|.+|++.+|-
T Consensus 349 Y~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 349 YDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cCCChHHeeeeccCcceEEEEecccc
Confidence 532 111235677889999998874
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.68 E-value=0.00084 Score=84.43 Aligned_cols=152 Identities=10% Similarity=0.103 Sum_probs=85.9
Q ss_pred cccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC------CceeEeeehhhhhccCChHHH
Q 001805 191 LKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF------EGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~l~~l 264 (1011)
.+.+|||+.++.++...|.... ..-+.++|.+|+|||++|+.+++++...+ ...+|..++.........
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~--- 246 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKY--- 246 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchh---
Confidence 3569999999999999986532 34466899999999999999999875432 223333322211000000
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhhh--cCCcEEEEEccCCCHH----------HHHHHhcCCCCCCCC-ceEEEE
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSRL--HHKKVLLLIDDVVDIK----------QLECLAGKREWFGPG-SRIIIT 331 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~k~~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~IIiT 331 (1011)
..+....+..+...+ .+++.+|++|+++... ..+.+.+.+ ..| -++|-+
T Consensus 247 ---------------~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~Iga 308 (852)
T TIGR03346 247 ---------------RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGA 308 (852)
T ss_pred ---------------hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEe
Confidence 001111111122222 2468999999996442 223333332 233 344544
Q ss_pred eCCchhhh-------ccCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 332 SRDKHLLM-------THGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 332 TR~~~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
|....... .......+.++..+.++..+++....
T Consensus 309 Tt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44332211 01123467899999999999887654
No 153
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.67 E-value=0.0021 Score=66.29 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=40.3
Q ss_pred cccccccccchhHHHHHHHhh---cCCCCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 189 GILKNLVGIDSHLKNLRLLMD---KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
...+.++|.+.+.+.|.+-.. .+ ....-|.+||..|.|||++++++.+.+..+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345789999999988865332 22 234568889999999999999999877554
No 154
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.64 E-value=0.0014 Score=68.94 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=28.2
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
...+.++|.+|+|||+||.++++.+...-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45789999999999999999999876654455555
No 155
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.63 E-value=3.6e-05 Score=81.26 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=59.2
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhc-cCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCcc-----ccccch
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSH-KFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIW-----NVYDGI 287 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~-----~~~~~~ 287 (1011)
....++|.|++|+|||||++++++.... +|+..+|+..+.+ ...++.++++++...+.-....... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 3467999999999999999999997654 6888888864432 1256778887773332211111111 011112
Q ss_pred HHHHhh-hcCCcEEEEEccCCCHH
Q 001805 288 NIIGSR-LHHKKVLLLIDDVVDIK 310 (1011)
Q Consensus 288 ~~l~~~-L~~k~~LlVlDdv~~~~ 310 (1011)
...+.. -.++++++++|++....
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHhh
Confidence 222222 24789999999996543
No 156
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=1.4e-06 Score=99.47 Aligned_cols=127 Identities=27% Similarity=0.205 Sum_probs=77.6
Q ss_pred hhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCC
Q 001805 605 HVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSG 684 (1011)
Q Consensus 605 ~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 684 (1011)
.|...+.++|.+..+..++.-++.|+.|||++|+. .... .+..|+.|++|||+.| .+..+|..-..-..|+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh-hhhH-HHHhcccccccccccc-hhccccccchhhhhheeeeecc
Confidence 46777777788888888888888888888888763 3332 5667788888888874 4566665322222378888887
Q ss_pred CCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCC
Q 001805 685 CKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSF 758 (1011)
Q Consensus 685 ~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l 758 (1011)
|.+.....+ .++.+|+.||+++|-+.+-.-...++.+.+|+.|+|.||.+
T Consensus 242 N~l~tL~gi------------------------e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLRGI------------------------ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhhhH------------------------HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 765333333 34445555555555443322223344455556666666544
No 157
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0017 Score=71.45 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=105.7
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc---------------cCCceeEeeehhhhh
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH---------------KFEGSSFLANVREIS 256 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~~~~~~~~~~ 256 (1011)
..++|-+...+.+.+.+..+ .-.+...++|+.|+||+++|.++++.+-. .++...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 56899999999999998754 22478999999999999999999886422 12333333210000
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCccccc-cchHHHHhhh-----cCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceE
Q 001805 257 KEGGLISLQKQLLSQLLKLPNNGIWNVY-DGINIIGSRL-----HHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRI 328 (1011)
Q Consensus 257 ~~~~l~~l~~~ll~~l~~~~~~~~~~~~-~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~I 328 (1011)
...... ...+.. .+........+. +.+..+.+.+ .+++-++|+|+++... ....|+..+..-+ .+.+
T Consensus 82 ~g~~~~---~~~~~~-~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKLIT---ASEAEE-AGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccc---hhhhhh-ccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000 000000 000000000000 0112222222 3456688999987543 3445554443334 4455
Q ss_pred EEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHHH
Q 001805 329 IITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 329 IiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
|++|.+. .++.. ......+++.+++.++..+.+....... . .......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~--~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---I--LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---c--chhHHHHHHHHcCCCHHHHHHH
Confidence 5555443 44332 2334688999999999999988764211 1 1111357889999999755443
No 158
>CHL00176 ftsH cell division protein; Validated
Probab=97.60 E-value=0.0011 Score=79.61 Aligned_cols=172 Identities=16% Similarity=0.251 Sum_probs=97.7
Q ss_pred cccccccchhHHHHHHHhh---c-------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCC
Q 001805 191 LKNLVGIDSHLKNLRLLMD---K-------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGG 260 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1011)
.++++|.+...+++.+.+. . +..-.+-|.++|++|.|||+||++++......| +.....+
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s~------ 251 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGSE------ 251 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHHH------
Confidence 4578898887777766543 1 112245699999999999999999988653222 1111100
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------------HHHHHhcCCCCC--
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------------QLECLAGKREWF-- 322 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~-- 322 (1011)
+ .....+. ........+.......+.+|+|||++... .+..++...+.+
T Consensus 252 ---f----~~~~~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 252 ---F----VEMFVGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred ---H----HHHhhhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 0 0000000 00111233444445678999999996441 133444333322
Q ss_pred CCCceEEEEeCCchhhh-----ccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCC
Q 001805 323 GPGSRIIITSRDKHLLM-----THGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGG 388 (1011)
Q Consensus 323 ~~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~G 388 (1011)
..+..||.||...+.+. ....+..+.++..+.++-.+++..++-.... ........+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 23556666776543322 1234578899999999999999888743211 112234557777776
No 159
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.59 E-value=8.1e-05 Score=81.86 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=59.0
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhc-cCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccc-----cchH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSH-KFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVY-----DGIN 288 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-----~~~~ 288 (1011)
.+..+|+|++|+||||||+++|+.+.. +|+..+|+..+++. ...+.++++++...+...........+ ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999997654 69999998865442 235667777765432211111111110 1111
Q ss_pred HHHhh-hcCCcEEEEEccCCCHH
Q 001805 289 IIGSR-LHHKKVLLLIDDVVDIK 310 (1011)
Q Consensus 289 ~l~~~-L~~k~~LlVlDdv~~~~ 310 (1011)
..+.. ..+++++|++|++....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHH
Confidence 11121 35789999999996544
No 160
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.58 E-value=6.6e-05 Score=55.81 Aligned_cols=42 Identities=36% Similarity=0.503 Sum_probs=28.9
Q ss_pred cCCcEEECCCCCCeecCccccCCCCCCEEEEcCCcCccccCCC
Q 001805 746 WSLEELYLSKNSFVTAPASINRLFNLEELELEDCKRLQSMPQL 788 (1011)
Q Consensus 746 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 788 (1011)
++|++|+|++|+++.+|..+.+|++|+.|++++|+ +++++.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISPL 42 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcCC
Confidence 46777888888887777777888888888888773 5555543
No 161
>CHL00181 cbbX CbbX; Provisional
Probab=97.58 E-value=0.0018 Score=70.36 Aligned_cols=131 Identities=15% Similarity=0.184 Sum_probs=72.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhcc-C-CceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHK-F-EGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
..+.++|.+|+|||++|+.+++..... + ...-|+. ++ ...+.....+... ......+...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v~--------~~~l~~~~~g~~~------~~~~~~l~~a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----VT--------RDDLVGQYIGHTA------PKTKEVLKKA 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----ec--------HHHHHHHHhccch------HHHHHHHHHc
Confidence 358899999999999999998864321 1 1111222 11 0112222211110 0011122221
Q ss_pred hcCCcEEEEEccCCCH-----------HHHHHHhcCCCCCCCCceEEEEeCCchhhh--------ccCcCcEEEcCCCCH
Q 001805 294 LHHKKVLLLIDDVVDI-----------KQLECLAGKREWFGPGSRIIITSRDKHLLM--------THGVDEVYKLRELHD 354 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~--------~~~~~~~~~l~~L~~ 354 (1011)
..-+|+||+++.. +..+.|.........+.+||+++....... .......+.+++++.
T Consensus 122 ---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 122 ---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred ---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 2348999999642 334555554443345567777775432211 012345789999999
Q ss_pred HHHHHHHHHHhhc
Q 001805 355 DNALRLFCKKAFK 367 (1011)
Q Consensus 355 ~ea~~Lf~~~a~~ 367 (1011)
+|..+++...+-.
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877643
No 162
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00094 Score=81.66 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=84.1
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC------CceeEeeehhhhhccCChHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF------EGSSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~l~~l~ 265 (1011)
+.++||+.++.++.+.|.... ..-+.++|.+|+|||++|+.+++++...- +...|..+..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~------------ 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG------------ 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH------------
Confidence 468999999999999887532 23456899999999999999998753321 2223322111
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHhhh-cCCcEEEEEccCCCH----------HHHH-HHhcCCCCCCCCceEEEEeC
Q 001805 266 KQLLSQLLKLPNNGIWNVYDGINIIGSRL-HHKKVLLLIDDVVDI----------KQLE-CLAGKREWFGPGSRIIITSR 333 (1011)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~k~~LlVlDdv~~~----------~~~~-~l~~~~~~~~~gs~IIiTTR 333 (1011)
.++. +.. ...+.......+...+ +.++.+|++|+++.. .+.. .+.+.+. ...-++|-+|.
T Consensus 252 -~lla---G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt 323 (758)
T PRK11034 252 -SLLA---GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTT 323 (758)
T ss_pred -HHhc---ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCC
Confidence 1110 000 0001111122222222 346789999999643 1122 2233221 12234454444
Q ss_pred Cchhhhc-------cCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 334 DKHLLMT-------HGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 334 ~~~~~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
..+.... ......+.+++++.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3332110 1123578999999999999987654
No 163
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.0019 Score=71.57 Aligned_cols=93 Identities=16% Similarity=0.149 Sum_probs=59.0
Q ss_pred cEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCc
Q 001805 298 KVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKK 373 (1011)
Q Consensus 298 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 373 (1011)
+-++|+|+++.. .....++..+..-..++.+|+||.+.. ++.. ......+.+.+++.+++.+.+.... . .
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~-~---- 180 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-P-E---- 180 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-c-c----
Confidence 334567999753 345555555443356777887777664 3322 2234578999999999998887653 1 1
Q ss_pred cHHHHHHHHHHHhCCCchHHHHH
Q 001805 374 GYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 374 ~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
...+.+..++..++|.|+....+
T Consensus 181 ~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CChHHHHHHHHHcCCCHHHHHHH
Confidence 11334556788999999754443
No 164
>PRK12377 putative replication protein; Provisional
Probab=97.56 E-value=0.0022 Score=67.77 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=29.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
...+.++|.+|+|||+||.++++.+......+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998776555556654
No 165
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0036 Score=75.03 Aligned_cols=199 Identities=15% Similarity=0.178 Sum_probs=104.8
Q ss_pred cccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--CCc-eeEee-ehhhhhccCChHHH
Q 001805 189 GILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--FEG-SSFLA-NVREISKEGGLISL 264 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~-~~~~~-~~~~~~~~~~l~~l 264 (1011)
....++||.+.-.+.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. ... .|-.. ..+++....... +
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-~ 90 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-V 90 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC-e
Confidence 34578999999999999888653 234677899999999999999998865321 100 00000 000000000000 0
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHhh-hcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEe-CCchhhhc
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGSR-LHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITS-RDKHLLMT 340 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~~~~~~~ 340 (1011)
. .+-+.......++.+....+... ...++-++|+|+++.. ...+.|+..+........+|++| ....+...
T Consensus 91 ~-----eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 91 F-----EIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred e-----eeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0 00000000001111111111111 1234557889999764 33555655554434566666555 43434322
Q ss_pred -cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCc-hHHHHH
Q 001805 341 -HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLP-LALKVL 396 (1011)
Q Consensus 341 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlP-Lal~~~ 396 (1011)
......+++.+++.++....+...+-...... ..+....|++.++|.. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i--~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI--SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 12235678999999998888766553322211 2456677888998865 344443
No 166
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.0037 Score=64.24 Aligned_cols=197 Identities=18% Similarity=0.195 Sum_probs=107.9
Q ss_pred ccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHh
Q 001805 194 LVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLL 273 (1011)
Q Consensus 194 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 273 (1011)
+++...+.+.+..+-..-+++.+++.++|.-|.|||.++++....+-+.--.++.+. ........+...+..++.
T Consensus 30 ~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 30 DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLE 104 (269)
T ss_pred hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhc
Confidence 344444444443333223345579999999999999999965554432222222332 223445566677777754
Q ss_pred CCCCCCccccccchHHHHhhh-----cCCc-EEEEEccCCCH--HHHHHH---hcCCCCCCCCceEEEEeCCc-------
Q 001805 274 KLPNNGIWNVYDGINIIGSRL-----HHKK-VLLLIDDVVDI--KQLECL---AGKREWFGPGSRIIITSRDK------- 335 (1011)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~L-----~~k~-~LlVlDdv~~~--~~~~~l---~~~~~~~~~gs~IIiTTR~~------- 335 (1011)
..+ ...+......+.+.| ++++ +.+++|+..+. ++++.+ ...-..+..--+|+..-..+
T Consensus 105 ~~p---~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~ 181 (269)
T COG3267 105 SQP---KVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRL 181 (269)
T ss_pred cCc---cchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhch
Confidence 422 222222233333222 4566 99999998653 334333 22222112222344333221
Q ss_pred hhhhcc-CcCcE-EEcCCCCHHHHHHHHHHHhhccCCCCcc-HHHHHHHHHHHhCCCchHHHHHHH
Q 001805 336 HLLMTH-GVDEV-YKLRELHDDNALRLFCKKAFKTHQPKKG-YEQLSEWVTKYSGGLPLALKVLGS 398 (1011)
Q Consensus 336 ~~~~~~-~~~~~-~~l~~L~~~ea~~Lf~~~a~~~~~~~~~-~~~l~~~i~~~~~GlPLal~~~~~ 398 (1011)
.+.... ....+ |++.|++.++...++..+.-+...+.+- ..+....|.....|.|.++..++.
T Consensus 182 ~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 182 PVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 011111 11234 8999999999999888776544333332 345667788899999999987754
No 167
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.56 E-value=0.0012 Score=65.94 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=39.4
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
...++||-++.++++.-.-.. ++.+-+.|.||+|+||||-+..+++.+
T Consensus 25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 446789999999988776644 456778899999999999999988865
No 168
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=3.1e-05 Score=79.85 Aligned_cols=85 Identities=12% Similarity=0.070 Sum_probs=57.1
Q ss_pred CCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeecC--ccccCCCCCCEEEEcCCcCccccCCCCCCccEEee
Q 001805 720 LWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTAP--ASINRLFNLEELELEDCKRLQSMPQLPPNIKEVGV 797 (1011)
Q Consensus 720 l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~lp~~L~~L~l 797 (1011)
++++..+-+..|.+.+..--.....++++-.|+|+.|++.+.. ..+..++.|..|.+++++....+..- -=+.|-+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~--err~llI 275 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG--ERRFLLI 275 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC--cceEEEE
Confidence 4567777777776655444556667888889999999887653 46788899999999998877766431 1123344
Q ss_pred cCCCccccc
Q 001805 798 NGCASLEKL 806 (1011)
Q Consensus 798 ~~c~~L~~l 806 (1011)
...++++.+
T Consensus 276 aRL~~v~vL 284 (418)
T KOG2982|consen 276 ARLTKVQVL 284 (418)
T ss_pred eeccceEEe
Confidence 444444444
No 169
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.54 E-value=0.00075 Score=73.41 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=70.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc--CCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK--FEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
-+.++|++|.|||++|+.++..+... .....|+. ++. .++...+.+... ......+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~~--------~~l~~~~~g~~~------~~~~~~~~~-- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VTR--------DDLVGQYIGHTA------PKTKEILKR-- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ecH--------HHHhHhhcccch------HHHHHHHHH--
Confidence 58899999999999999988765432 11112332 110 112222222110 011112222
Q ss_pred cCCcEEEEEccCCCH-----------HHHHHHhcCCCCCCCCceEEEEeCCchhhhc--------cCcCcEEEcCCCCHH
Q 001805 295 HHKKVLLLIDDVVDI-----------KQLECLAGKREWFGPGSRIIITSRDKHLLMT--------HGVDEVYKLRELHDD 355 (1011)
Q Consensus 295 ~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~--------~~~~~~~~l~~L~~~ 355 (1011)
...-+|+||+++.. +..+.+...+.....+.+||+++........ ......+.+++++.+
T Consensus 120 -a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 120 -AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred -ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 13358899999632 2244555544433455677777653321110 012357899999999
Q ss_pred HHHHHHHHHh
Q 001805 356 NALRLFCKKA 365 (1011)
Q Consensus 356 ea~~Lf~~~a 365 (1011)
|-.+++...+
T Consensus 199 dl~~I~~~~l 208 (284)
T TIGR02880 199 ELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHH
Confidence 9999987776
No 170
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.51 E-value=0.019 Score=64.08 Aligned_cols=179 Identities=14% Similarity=0.127 Sum_probs=96.9
Q ss_pred CcEEEEEccCCCHH-----------HHHHHhcCCCCCCCCceEEEEeCCchhhh----cc--CcCcEEEcCCCCHHHHHH
Q 001805 297 KKVLLLIDDVVDIK-----------QLECLAGKREWFGPGSRIIITSRDKHLLM----TH--GVDEVYKLRELHDDNALR 359 (1011)
Q Consensus 297 k~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs~IIiTTR~~~~~~----~~--~~~~~~~l~~L~~~ea~~ 359 (1011)
++=+||+||..... +|...+.. .+=.+||++|-+..... .. .+.+.+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 35689999983321 23333322 34568999998764432 22 345678999999999999
Q ss_pred HHHHHhhccCCC--------------C----ccHHHHHHHHHHHhCCCchHHHHHHHHhcC-CChHHHHHHHHHHhcCCh
Q 001805 360 LFCKKAFKTHQP--------------K----KGYEQLSEWVTKYSGGLPLALKVLGSFLYG-KTTKEWQSAVKRLKRDSE 420 (1011)
Q Consensus 360 Lf~~~a~~~~~~--------------~----~~~~~l~~~i~~~~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~ 420 (1011)
+...+.-..... . ....+-....++.+||=-.-|+.+++.++. .++. .+++.+- .
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~---~Av~~iI---~ 297 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE---EAVEEII---S 297 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH---HHHHHHH---H
Confidence 998887432110 0 123333455778888888888888888764 3332 2222221 2
Q ss_pred hHHHHHHHHhhc-CC------chhhHHHHhhhccccCCCCHHHHHHHHhh-CCCCcccchhhccccccEEEec
Q 001805 421 NEILDILQISFD-GL------KETEKEIFLDIACFHRGENRDYVTKILDY-CDFDPVIGIRVLIDKSLIEVLS 485 (1011)
Q Consensus 421 ~~i~~~l~~sy~-~L------~~~~k~~fl~la~f~~~~~~~~l~~~~~~-~~~~~~~~l~~L~~~sLi~~~~ 485 (1011)
..+.++.+..+. .- +-...+.+..+-.+.+...+.+-..++.. ..-..+.+++.|.+..||++..
T Consensus 298 qsa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~lFk~~~E~~L~aLe~aeLItv~~ 370 (431)
T PF10443_consen 298 QSASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLSPLFKGNDETALRALEQAELITVTT 370 (431)
T ss_pred HHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcccccCCCChHHHHHHHHCCcEEEEe
Confidence 233334433332 11 11112222222223332223322222221 1112456899999999999876
No 171
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.51 E-value=0.0013 Score=77.81 Aligned_cols=175 Identities=17% Similarity=0.216 Sum_probs=95.4
Q ss_pred ccccccccchhHHHHHHHhh---c-------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC
Q 001805 190 ILKNLVGIDSHLKNLRLLMD---K-------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG 259 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1011)
..++++|.+...+++.+++. . +....+-+.++|++|.|||+||++++......| +..+..
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~~------ 122 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISGS------ 122 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccHH------
Confidence 34678898887777665443 1 122345688999999999999999988653322 111100
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------------HHHHHhcCCCCC-
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------------QLECLAGKREWF- 322 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~- 322 (1011)
. +.....+. ........+.......+.+|+|||++... .+..++...+.+
T Consensus 123 ---~----~~~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 123 ---D----FVEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred ---H----HHHHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 0 11110110 00111223333334567899999995531 122333333222
Q ss_pred -CCCceEEEEeCCchh-----hhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCc
Q 001805 323 -GPGSRIIITSRDKHL-----LMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 323 -~~gs~IIiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlP 390 (1011)
..+..||.||..... ......+..+.++..+.++-.++|..+.-....... .....+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~---~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD---VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc---hhHHHHHHhCCCCC
Confidence 224455666654432 222235678899999999999998877633222111 12346777777743
No 172
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0011 Score=71.00 Aligned_cols=167 Identities=18% Similarity=0.337 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCCh
Q 001805 193 NLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGL 261 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l 261 (1011)
..=|-+..+++|.+.... +-+.++=|.++|++|.|||-||++|+++....| +..+..
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS------- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS------- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH-------
Confidence 344678888888776642 223456799999999999999999999765444 332211
Q ss_pred HHHHHHHHHHHhCCCCCCccccccchHHHHhh---h-cCCcEEEEEccCCCHH--------------H--HHHHhcCCCC
Q 001805 262 ISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR---L-HHKKVLLLIDDVVDIK--------------Q--LECLAGKREW 321 (1011)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~---L-~~k~~LlVlDdv~~~~--------------~--~~~l~~~~~~ 321 (1011)
++..+..+. +..++++. . .+.+..|.+|.++... | +-.|+..++.
T Consensus 220 -----ElVqKYiGE----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 220 -----ELVQKYIGE----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred -----HHHHHHhcc----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 122222221 22222222 1 3568999999885432 1 3344555554
Q ss_pred CCC--CceEEEEeCCchh-----hhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCC-CccHHHHHHHHHHHhCCCc
Q 001805 322 FGP--GSRIIITSRDKHL-----LMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQP-KKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 322 ~~~--gs~IIiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~i~~~~~GlP 390 (1011)
|.+ ..+||..|-..++ +.....+..++++.-+.+.-.+.|.-|+.+-... .-+++. +++.+.|.-
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~s 357 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFS 357 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCc
Confidence 443 4588887765443 3334557889999777777778888777543322 234444 444555543
No 173
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=2e-06 Score=98.25 Aligned_cols=114 Identities=30% Similarity=0.190 Sum_probs=70.5
Q ss_pred ccCCcCCcccCCCCCCcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCCCcc
Q 001805 662 SKLKNVPENLGKVESLEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPND 741 (1011)
Q Consensus 662 ~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~p~~ 741 (1011)
+.+..+-+++.-++.|+.|+|+.|.+.....+..++.|++|+++.|.+....--+..++. |..|.|++|.+.. ...
T Consensus 174 N~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t---L~g 249 (1096)
T KOG1859|consen 174 NRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT---LRG 249 (1096)
T ss_pred hhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh---hhh
Confidence 344455555555666777777777664444566666677777666666543332333443 7788888877642 345
Q ss_pred cCCccCCcEEECCCCCCe---ecCccccCCCCCCEEEEcCCc
Q 001805 742 IGNLWSLEELYLSKNSFV---TAPASINRLFNLEELELEDCK 780 (1011)
Q Consensus 742 l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~L~~c~ 780 (1011)
+.++.+|+.|||+.|-+. .+. -+..|..|+.|+|.+|+
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~-pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELE-PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhh-HHHHHHHHHHHhhcCCc
Confidence 667778888888887544 221 24456677777777776
No 174
>PRK08116 hypothetical protein; Validated
Probab=97.45 E-value=0.00073 Score=72.71 Aligned_cols=102 Identities=22% Similarity=0.142 Sum_probs=56.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH 295 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 295 (1011)
..+.++|.+|+|||.||.++++.+..+...++|+. + ..+...+....... .......+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~---------~~ll~~i~~~~~~~-------~~~~~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-F---------PQLLNRIKSTYKSS-------GKEDENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-H---------HHHHHHHHHHHhcc-------ccccHHHHHHHhc
Confidence 45889999999999999999998766544445543 1 22333333332110 0111223334444
Q ss_pred CCcEEEEEccCCC--HHH--HHHHhcCCCC-CCCCceEEEEeCCc
Q 001805 296 HKKVLLLIDDVVD--IKQ--LECLAGKREW-FGPGSRIIITSRDK 335 (1011)
Q Consensus 296 ~k~~LlVlDdv~~--~~~--~~~l~~~~~~-~~~gs~IIiTTR~~ 335 (1011)
+-. ||||||+.. ... .+.+...++. ...|..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 899999932 211 2222222211 13566799998643
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0014 Score=78.63 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=76.1
Q ss_pred cccccccchhHHHHHHHhhc-------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHH
Q 001805 191 LKNLVGIDSHLKNLRLLMDK-------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLIS 263 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~ 263 (1011)
....+|-+..++.+.+.+.. ...........|+.|+|||.||++++..+-+.=+..+-+ ++.+..+++.
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHs--- 565 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHS--- 565 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHH---
Confidence 35689999999998887762 122346778899999999999999998764433444443 3444433333
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcE-EEEEccCCC--HHHHHHHhcCCCC
Q 001805 264 LQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKV-LLLIDDVVD--IKQLECLAGKREW 321 (1011)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~--~~~~~~l~~~~~~ 321 (1011)
.+.+.+.+..-..-. --..+-+..+++|| +|.||.++. ++.++-|++.++.
T Consensus 566 -----VSrLIGaPPGYVGye--eGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 566 -----VSRLIGAPPGYVGYE--EGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred -----HHHHhCCCCCCceec--cccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 344444443322211 13455666778887 778899964 5557777666554
No 176
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.39 E-value=0.00018 Score=77.28 Aligned_cols=168 Identities=20% Similarity=0.276 Sum_probs=98.3
Q ss_pred ccccccccchhHHHHHHHhhcCCCC-ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSND-VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQL 268 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~l 268 (1011)
..+.+-+|+.++..+..++...+.. +..|.|+|-.|.|||.+.+++++... ...+|+..+ +-.....+.++|
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~----ecft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCV----ECFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehH----HhccHHHHHHHH
Confidence 4577889999999999999765543 45569999999999999999998762 234676633 334556667777
Q ss_pred HHHHhCCCCCC-c-----cccccchHHHHh--hhc--CCcEEEEEccCCCHHHHHHH-----hcCCCCCCCCceEEEEeC
Q 001805 269 LSQLLKLPNNG-I-----WNVYDGINIIGS--RLH--HKKVLLLIDDVVDIKQLECL-----AGKREWFGPGSRIIITSR 333 (1011)
Q Consensus 269 l~~l~~~~~~~-~-----~~~~~~~~~l~~--~L~--~k~~LlVlDdv~~~~~~~~l-----~~~~~~~~~gs~IIiTTR 333 (1011)
+.+........ . .+..+.+..+.+ ... ++.++||||+++...+.+.. ...........-+|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 77753111111 0 111122233333 122 45899999999876653222 111110112233444443
Q ss_pred Cc---hhhhccCcCc--EEEcCCCCHHHHHHHHHHH
Q 001805 334 DK---HLLMTHGVDE--VYKLRELHDDNALRLFCKK 364 (1011)
Q Consensus 334 ~~---~~~~~~~~~~--~~~l~~L~~~ea~~Lf~~~ 364 (1011)
.. .....++... ++..+.-+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 2222234333 4456788899988887553
No 177
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.012 Score=65.85 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=80.3
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
....+.|||..|.|||.|++++.+......+...++. .+ ......++...+.. ...+.+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~~----se~f~~~~v~a~~~----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----LT----SEDFTNDFVKALRD----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----cc----HHHHHHHHHHHHHh----------hhHHHHHHh
Confidence 3568999999999999999999998777766433322 11 11222333333221 123445554
Q ss_pred hcCCcEEEEEccCCCHH----HHHHHhcCCCC-CCCCceEEEEeCCch---------hhhccCcCcEEEcCCCCHHHHHH
Q 001805 294 LHHKKVLLLIDDVVDIK----QLECLAGKREW-FGPGSRIIITSRDKH---------LLMTHGVDEVYKLRELHDDNALR 359 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~---------~~~~~~~~~~~~l~~L~~~ea~~ 359 (1011)
. .-=++++||++-.. .-+.+...++. ...|..||+|++... +.......-++++.+++.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 4 33488899985421 12222222111 134558999996542 22223344689999999999999
Q ss_pred HHHHHhhc
Q 001805 360 LFCKKAFK 367 (1011)
Q Consensus 360 Lf~~~a~~ 367 (1011)
.+.+.+-.
T Consensus 252 iL~kka~~ 259 (408)
T COG0593 252 ILRKKAED 259 (408)
T ss_pred HHHHHHHh
Confidence 99887643
No 178
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.35 E-value=0.00096 Score=63.51 Aligned_cols=23 Identities=43% Similarity=0.512 Sum_probs=21.1
Q ss_pred EEEEecCCchhHHHHHHHHHHhh
Q 001805 218 IGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 179
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0023 Score=73.05 Aligned_cols=162 Identities=20% Similarity=0.169 Sum_probs=92.9
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCC
Q 001805 199 SHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNN 278 (1011)
Q Consensus 199 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~ 278 (1011)
.-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++...........+.+..+...
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~--------- 88 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYI--------- 88 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHH---------
Confidence 3344454444322 2299999999999999997766655444 455432111111111111111111
Q ss_pred CccccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchhhhc------cCcCcEEEcCCC
Q 001805 279 GIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLLMT------HGVDEVYKLREL 352 (1011)
Q Consensus 279 ~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~------~~~~~~~~l~~L 352 (1011)
..-..++..|+||.|.....|+..+..+-..++. +|+||+-+...... .|....+++-||
T Consensus 89 -------------~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 89 -------------ELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred -------------HhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 1111177899999999999988877666554555 88888877654322 234567899999
Q ss_pred CHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHH
Q 001805 353 HDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKV 395 (1011)
Q Consensus 353 ~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 395 (1011)
+..|-..+-...+ ... .... .-+=.-..||.|-++..
T Consensus 155 SF~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 155 SFREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred CHHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhC
Confidence 9999876532000 000 1111 11123356899987764
No 180
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.27 E-value=0.00028 Score=78.22 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=60.8
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhcc-CCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccc-----cchH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHK-FEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVY-----DGIN 288 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~-----~~~~ 288 (1011)
...++|+|++|.|||||++.+++.+... |+..+|+..+++ +...+.++++.++..+............ ...+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4579999999999999999999987665 888888875432 2246778888875544322211111110 1111
Q ss_pred HHHh-hhcCCcEEEEEccCCCHH
Q 001805 289 IIGS-RLHHKKVLLLIDDVVDIK 310 (1011)
Q Consensus 289 ~l~~-~L~~k~~LlVlDdv~~~~ 310 (1011)
..+. +-.+++++|++|++....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHH
Confidence 1111 135789999999997654
No 181
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.26 E-value=0.0055 Score=65.40 Aligned_cols=198 Identities=15% Similarity=0.144 Sum_probs=109.8
Q ss_pred ccccccch---hHHHHHHHhhcCC-CCceEEEEEecCCchhHHHHHHHHHHhhccCCc------eeEeeehhhhhccCCh
Q 001805 192 KNLVGIDS---HLKNLRLLMDKGS-NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG------SSFLANVREISKEGGL 261 (1011)
Q Consensus 192 ~~~vGr~~---~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~~~~~~~~~~~l 261 (1011)
+.+||-.. -++.|++++.... ...+-+.|+|.+|+|||++++.+...+...++. ++.+. .....+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCCh
Confidence 45666543 3456677776432 345679999999999999999999876544432 22222 3456778
Q ss_pred HHHHHHHHHHHhCCCCCCccccccchHHHHhhhcC-CcEEEEEccCCCHH-----HHHHHhcCCCCC---CCCceEEEEe
Q 001805 262 ISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHH-KKVLLLIDDVVDIK-----QLECLAGKREWF---GPGSRIIITS 332 (1011)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~-----~~~~l~~~~~~~---~~gs~IIiTT 332 (1011)
..+...|+.++ +.+...............+.++. +.=+||+|.+.+.- +-+.++..+... -.=+-|.+-|
T Consensus 110 ~~~Y~~IL~~l-gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 110 RRFYSAILEAL-GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHHHHh-CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 88999999985 33333333444444444444443 34588999996631 111111111111 1234556666
Q ss_pred CCchhhhcc-----CcCcEEEcCCCCHHHH-HHHHHHHh--hc-cCCCCccHHHHHHHHHHHhCCCchHHH
Q 001805 333 RDKHLLMTH-----GVDEVYKLRELHDDNA-LRLFCKKA--FK-THQPKKGYEQLSEWVTKYSGGLPLALK 394 (1011)
Q Consensus 333 R~~~~~~~~-----~~~~~~~l~~L~~~ea-~~Lf~~~a--~~-~~~~~~~~~~l~~~i~~~~~GlPLal~ 394 (1011)
++..-+-.. .....+.++....++- ..|+.... +. .....-...++++.|...++|+.--+.
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 544221110 1234567776665544 34432221 11 111122457899999999999875443
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.0017 Score=77.37 Aligned_cols=53 Identities=15% Similarity=0.225 Sum_probs=42.7
Q ss_pred ccccccccccchhHHHHHHHhhcCC---CCceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGS---NDVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
|.....++|-+..++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3445789999999999999887432 3346899999999999999999987553
No 183
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.26 E-value=0.00032 Score=68.69 Aligned_cols=65 Identities=29% Similarity=0.349 Sum_probs=56.9
Q ss_pred cEEEccccCcC-ccchHHHHHHHHHhC-CCeEEecCCcCCC--CCcchHHHHHHHHhcceEEEEecCCc
Q 001805 20 DVFLSFRGVDT-RKNFTDHLYTALDQK-GIIVFRDDKELER--GESISPGLFKAIEESKISIIVFSRNY 84 (1011)
Q Consensus 20 dvfis~~~~d~-~~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~~~~~i~~s~~~i~v~s~~y 84 (1011)
.|||||+..+. ...+|..|++.|++. |+.|.+|.++... +..+...+.+++++++.+|+|.|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999987443 257899999999999 9999999998854 78999999999999999999999655
No 184
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=7.2e-05 Score=90.38 Aligned_cols=107 Identities=22% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCCCeeeeCCCCCC-CcCcccccCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccC--cccccccccce
Q 001805 579 LKYHPTWNLSGLLKF-SNFPEIMTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLP--CTINGLKSLKK 655 (1011)
Q Consensus 579 L~~L~~L~L~~~~~l-~~lp~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp--~~i~~l~~L~~ 655 (1011)
|+.|+.|.++|-... .++-....++++|..||+++++++.+ ..|++|++|+.|.+.+-.. ..-. ..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~-e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEF-ESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCC-CchhhHHHHhcccCCCe
Confidence 344444555553221 12334455667777777777777777 4577777777777765321 1111 13557778888
Q ss_pred ecccccccCCcC------CcccCCCCCCcEEEcCCCCC
Q 001805 656 LYLSGCSKLKNV------PENLGKVESLEVLELSGCKG 687 (1011)
Q Consensus 656 L~l~~c~~l~~l------p~~l~~l~~L~~L~l~~~~~ 687 (1011)
||+|.-.....- -+.-..|++|+.||.|++.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 887763322111 01122367888888887765
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.22 E-value=0.0028 Score=66.27 Aligned_cols=138 Identities=10% Similarity=0.114 Sum_probs=74.6
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH-h-hccCCceeEeeehhhhhc-----cCChHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL-T-SHKFEGSSFLANVREISK-----EGGLISL 264 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~-----~~~l~~l 264 (1011)
..+.+|......+..++.. ..+|.+.|.+|.|||+||.+++.+ + ...|...+...-.-+..+ ..++.+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567888888888887753 248999999999999999998874 3 445555444322111111 0111111
Q ss_pred H----H---HHHHHHhCCCCCCc-c--ccccchHHHHhhhcCCc---EEEEEccCCC--HHHHHHHhcCCCCCCCCceEE
Q 001805 265 Q----K---QLLSQLLKLPNNGI-W--NVYDGINIIGSRLHHKK---VLLLIDDVVD--IKQLECLAGKREWFGPGSRII 329 (1011)
Q Consensus 265 ~----~---~ll~~l~~~~~~~~-~--~~~~~~~~l~~~L~~k~---~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~II 329 (1011)
. . +.+..+++...... . ......-.-..+++++. -+||+|.+.+ ..++..++... +.+|++|
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v 207 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVI 207 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEE
Confidence 1 1 11222111100000 0 00000000112345554 4899999965 45566666554 7899999
Q ss_pred EEeCCch
Q 001805 330 ITSRDKH 336 (1011)
Q Consensus 330 iTTR~~~ 336 (1011)
+|--..+
T Consensus 208 ~~GD~~Q 214 (262)
T PRK10536 208 VNGDITQ 214 (262)
T ss_pred EeCChhh
Confidence 9876543
No 186
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.18 E-value=0.00029 Score=52.40 Aligned_cols=41 Identities=34% Similarity=0.520 Sum_probs=34.7
Q ss_pred CCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCeecCc
Q 001805 721 WSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFVTAPA 763 (1011)
Q Consensus 721 ~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~~lp~ 763 (1011)
++|++|++++|++.+ +|..++.+++|+.|++++|.++.++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999999975 88889999999999999999987763
No 187
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.18 E-value=0.011 Score=64.87 Aligned_cols=93 Identities=15% Similarity=0.113 Sum_probs=59.9
Q ss_pred CCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCC
Q 001805 296 HKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQP 371 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 371 (1011)
+++-++|+|+++... ....|+..+..-.+++.+|++|.+. .++.. ......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 455689999997654 3445554444335677777777654 33332 2234678999999999998886431 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 001805 372 KKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 372 ~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
. .+.+..++..++|.|+....+
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 233567899999999865443
No 188
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.18 E-value=0.0008 Score=64.61 Aligned_cols=34 Identities=35% Similarity=0.380 Sum_probs=26.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
+.+.|+|++|+||||+|+.++..+.......+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 5789999999999999999998776655334444
No 189
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.15 E-value=0.0098 Score=66.06 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=102.6
Q ss_pred ccccccccchhHHHHHHHhhc--CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc--eeEeeehhhhhccCChHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDK--GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG--SSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~l~~l~ 265 (1011)
.+..++||+.|+..+.+++.. +.+..+.+-|.|-+|.|||.+...++.+....... .+++.. ..-.....+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc----~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC----TSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee----ccccchHHHH
Confidence 356899999999999999873 34556788899999999999999999876554443 355542 2223445666
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHhhhcC--CcEEEEEccCCCHHH--HHHHhcCCCCC-CCCceEEEEeCCch----
Q 001805 266 KQLLSQLLKLPNNGIWNVYDGINIIGSRLHH--KKVLLLIDDVVDIKQ--LECLAGKREWF-GPGSRIIITSRDKH---- 336 (1011)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IIiTTR~~~---- 336 (1011)
..+...+.......... .+....+.....+ +.+|+|+|..|.... -+.+...+.|- -+++|+|+.--...
T Consensus 224 ~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 67776653322222211 2223334333333 368999999876542 11122222221 24566654332111
Q ss_pred --h---hhc--cCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 337 --L---LMT--HGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 337 --~---~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
. +.. ......+..++-+.++-.+.|..+.
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 1 111 1223567788999999999998876
No 190
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.11 E-value=0.0049 Score=76.67 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=92.8
Q ss_pred cccccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC
Q 001805 191 LKNLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG 259 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1011)
.+++.|.+..++++.+.+.. +-...+-|.++|++|.|||+||+++++.....| +.+. ..+.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc
Confidence 35688999999998877642 112346789999999999999999998764432 1221 11111000
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH-------------HHHHHhcCCCCC-CCC
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK-------------QLECLAGKREWF-GPG 325 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~-~~g 325 (1011)
.+ .........+.......+.+|+||+++... ....+...++.. ..+
T Consensus 253 -------------~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~ 313 (733)
T TIGR01243 253 -------------YG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG 313 (733)
T ss_pred -------------cc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC
Confidence 00 000011122223334567899999985421 122333222211 233
Q ss_pred ceEEE-EeCCchhh-hc----cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCc
Q 001805 326 SRIII-TSRDKHLL-MT----HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 326 s~IIi-TTR~~~~~-~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlP 390 (1011)
..++| ||...... .. ...+..+.+...+.++-.+++..+.-...... ......+++.+.|.-
T Consensus 314 ~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 314 RVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFV 381 (733)
T ss_pred CEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCC
Confidence 34444 44433211 11 12345778888899988888875542211111 112455777777754
No 191
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.01 Score=67.66 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=87.9
Q ss_pred cccccccchhHHHHHHHhhc----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCC
Q 001805 191 LKNLVGIDSHLKNLRLLMDK----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGG 260 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1011)
.+++=|.+..+++|.+++.. +-...|-|.++|++|.|||.||++++....-.|-.+.=
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA------------ 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISA------------ 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecc------------
Confidence 46778999999999887752 22335779999999999999999999876544321110
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH--------H-----HHHHhcCCCCC-----
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK--------Q-----LECLAGKREWF----- 322 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--------~-----~~~l~~~~~~~----- 322 (1011)
-++.+.+.+.. .+...+.+.+.-..-++++++|+++... + +..|+...+..
T Consensus 257 -----peivSGvSGES------EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 257 -----PEIVSGVSGES------EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred -----hhhhcccCccc------HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 12222222211 1122333444456779999999996421 1 22233222211
Q ss_pred -CCCceEEE-EeCCchhh----hccCcCcEEEcCCCCHHHHHHHHHHHhhc
Q 001805 323 -GPGSRIII-TSRDKHLL----MTHGVDEVYKLRELHDDNALRLFCKKAFK 367 (1011)
Q Consensus 323 -~~gs~IIi-TTR~~~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 367 (1011)
+.+.-||- |+|...+- .....++.+.+..-++.+-.+.+...+-+
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 23333333 44543331 22234567777777777776776665543
No 192
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.016 Score=64.61 Aligned_cols=158 Identities=16% Similarity=0.095 Sum_probs=84.0
Q ss_pred cccc-cchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--CCceeEeeehhhhhccCChHHHHHHHH
Q 001805 193 NLVG-IDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--FEGSSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 193 ~~vG-r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
.++| -+.-++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-.. ...... +.....+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~c-----------g~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPC-----------GTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC-----------CcCHHHHHHh
Confidence 4566 555667777777543 235678999999999999999998865321 110000 0000000000
Q ss_pred HHHhC-----CCCCCccccccchHHHHhh-----hcCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCch-
Q 001805 270 SQLLK-----LPNNGIWNVYDGINIIGSR-----LHHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDKH- 336 (1011)
Q Consensus 270 ~~l~~-----~~~~~~~~~~~~~~~l~~~-----L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~- 336 (1011)
..... ........+++..+ +.+. ..+.+-++|+|+++... ....|+..+..-..++.+|++|.+..
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 00000 00000000111111 1111 12345578999987543 35556655554456777877776543
Q ss_pred hhhc-cCcCcEEEcCCCCHHHHHHHHHH
Q 001805 337 LLMT-HGVDEVYKLRELHDDNALRLFCK 363 (1011)
Q Consensus 337 ~~~~-~~~~~~~~l~~L~~~ea~~Lf~~ 363 (1011)
+... ......+++.+++.++..+.+..
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 3222 22346789999999999887754
No 193
>PRK08181 transposase; Validated
Probab=97.03 E-value=0.0022 Score=68.60 Aligned_cols=35 Identities=20% Similarity=0.028 Sum_probs=27.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
.-+.++|++|+|||.||.++++....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 45899999999999999999987665544455553
No 194
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.016 Score=63.51 Aligned_cols=91 Identities=14% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCC
Q 001805 296 HKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQP 371 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 371 (1011)
++.=++|+|+++... ....|+..+..-.+++.+|++|.+. .++.. ......+.+.+++.+++.+.+.... .
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-
Confidence 344578899997643 4555655554445677777766655 34433 2334678999999999998886532 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHHH
Q 001805 372 KKGYEQLSEWVTKYSGGLPLALKVL 396 (1011)
Q Consensus 372 ~~~~~~l~~~i~~~~~GlPLal~~~ 396 (1011)
. .+..++..++|.|+....+
T Consensus 182 ~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c-----hHHHHHHHcCCCHHHHHHH
Confidence 1 1346788999999866544
No 195
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.01 E-value=0.006 Score=75.91 Aligned_cols=172 Identities=15% Similarity=0.171 Sum_probs=94.8
Q ss_pred ccccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCC
Q 001805 192 KNLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGG 260 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1011)
..+.|.+...++|.+.+.. +-...+-|.++|++|.|||++|+++++.....| +.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~------- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGP------- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehH-------
Confidence 5578888888887776541 112345689999999999999999998765433 111111
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH--------------HHHHHhcCCCCC--CC
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK--------------QLECLAGKREWF--GP 324 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~ 324 (1011)
++++...+.. .......+...-...+.+|++|+++... .+..++..++.. ..
T Consensus 522 ------~l~~~~vGes------e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~ 589 (733)
T TIGR01243 522 ------EILSKWVGES------EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS 589 (733)
T ss_pred ------HHhhcccCcH------HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC
Confidence 1111111100 0011122222234567899999985431 123333333321 23
Q ss_pred CceEEEEeCCchhhh-----ccCcCcEEEcCCCCHHHHHHHHHHHhhccCCC-CccHHHHHHHHHHHhCCCc
Q 001805 325 GSRIIITSRDKHLLM-----THGVDEVYKLRELHDDNALRLFCKKAFKTHQP-KKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 325 gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~i~~~~~GlP 390 (1011)
+..||.||...+.+. ....+..+.++..+.++-.++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 590 ~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 590 NVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 445566665544322 12356788999999999999987665332211 112 234566666643
No 196
>PRK06921 hypothetical protein; Provisional
Probab=97.01 E-value=0.0016 Score=69.93 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=28.9
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhcc-CCceeEee
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHK-FEGSSFLA 250 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 250 (1011)
...+.++|.+|+|||.||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578999999999999999999987665 44455654
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=96.98 E-value=0.0027 Score=68.05 Aligned_cols=34 Identities=26% Similarity=0.179 Sum_probs=25.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
..+.|+|++|+|||+||.+++......-..+.|+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4688999999999999999987654333233444
No 198
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.97 E-value=0.009 Score=69.53 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=84.5
Q ss_pred cccccccchhHHHHHHHh---h-----cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChH
Q 001805 191 LKNLVGIDSHLKNLRLLM---D-----KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLI 262 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L---~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~ 262 (1011)
..++.|.+...+.+.+.. . .+-...+-|.++|++|.|||.+|+++++.....| +..+....
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l------- 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKL------- 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHh-------
Confidence 356778877666665421 1 1223356799999999999999999998764332 22111111
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHHH--------------HHHHhcCCCCCCCCceE
Q 001805 263 SLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQ--------------LECLAGKREWFGPGSRI 328 (1011)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~I 328 (1011)
.....+. +.......+...-...+++|++|+++..-. +..+...+.....+.-|
T Consensus 296 ------~~~~vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 296 ------FGGIVGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ------cccccCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 0000000 000111122222235789999999864210 11222212211234445
Q ss_pred EEEeCCchh-----hhccCcCcEEEcCCCCHHHHHHHHHHHhhc
Q 001805 329 IITSRDKHL-----LMTHGVDEVYKLRELHDDNALRLFCKKAFK 367 (1011)
Q Consensus 329 IiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 367 (1011)
|.||..... ......+..+.++..+.++-.++|..+..+
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 667755432 222345678899999999999999887744
No 199
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.021 Score=68.16 Aligned_cols=178 Identities=15% Similarity=0.214 Sum_probs=103.7
Q ss_pred ccccccccchhHHHHHHH---hhc-------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC
Q 001805 190 ILKNLVGIDSHLKNLRLL---MDK-------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG 259 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~---L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1011)
..+++.|.++..++|.+. |.. +..-++=|.++|++|.|||-||++++-.-.- =|+.. +..
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-----PF~sv----SGS- 378 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSV----SGS- 378 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-----ceeee----chH-
Confidence 346788988776666554 432 2233567999999999999999999875322 22221 100
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH-----------------HHHHHhcCCCCC
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK-----------------QLECLAGKREWF 322 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-----------------~~~~l~~~~~~~ 322 (1011)
++...+.+.... ...+.....-.+.++.|.+|+++... .+..++...+.+
T Consensus 379 -------EFvE~~~g~~as------rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 379 -------EFVEMFVGVGAS------RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred -------HHHHHhcccchH------HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 111111111000 00111222223567788888764321 266666666655
Q ss_pred CCCceE--EEEeCCchhh-----hccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 323 GPGSRI--IITSRDKHLL-----MTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 323 ~~gs~I--IiTTR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
..+..| |-+|...+++ +....+..+.++.-+..+..++|.-|+-+.... .+..++++ |+...-|.+=|
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 544433 3355544442 223457788899999999999999988554433 34566776 88888888754
No 200
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.93 E-value=0.029 Score=61.49 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=26.2
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
.-++.++|||++|.|||.+|++++..+...
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 456899999999999999999999987554
No 201
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.92 E-value=0.0033 Score=71.09 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=42.5
Q ss_pred cccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc--cCCceeEee
Q 001805 191 LKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH--KFEGSSFLA 250 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~ 250 (1011)
..++++.+..++.+...|..+ +.+.++|++|+|||++|+++++.+.. .+..+.|+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 356788888999998888643 45888999999999999999987653 344444443
No 202
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.91 E-value=5.7e-05 Score=69.27 Aligned_cols=80 Identities=18% Similarity=0.311 Sum_probs=38.4
Q ss_pred hhhcccCCccccccCcccC-CCCCCcEEeecCCCCCcccCcccccccccceecccccccCCcCCcccCCCCCCcEEEcCC
Q 001805 606 VLELHLEGTAIRGLPISIE-LFSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSG 684 (1011)
Q Consensus 606 L~~L~L~~~~i~~lp~si~-~L~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~ 684 (1011)
|...+|++|.++.+|..+. +.+.+..|+|++|. +..+|..+..++.|+.|+++.| .+...|+.+..|.+|-.|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCC
Confidence 3344444444444444432 22344555555543 4455555555555555555553 2334444444555555555555
Q ss_pred CCC
Q 001805 685 CKG 687 (1011)
Q Consensus 685 ~~~ 687 (1011)
+..
T Consensus 133 na~ 135 (177)
T KOG4579|consen 133 NAR 135 (177)
T ss_pred Ccc
Confidence 544
No 203
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.021 Score=62.76 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=93.0
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC--C-ceeEeeehhhhhccCChHHHHHHHHHHHhCCCC
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF--E-GSSFLANVREISKEGGLISLQKQLLSQLLKLPN 277 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~-~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~ 277 (1011)
.+.+.+.+..+ .-.....+.|+.|+||+++|++++..+-..- . ..|= .....+.+.. +..
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg------------~C~sC~~~~~----g~H 73 (325)
T PRK06871 11 YQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCG------------QCHSCHLFQA----GNH 73 (325)
T ss_pred HHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC------------CCHHHHHHhc----CCC
Confidence 34555555432 2346888999999999999999998642211 0 0010 0000011100 000
Q ss_pred CCc------cccccchHHHHh---hh-----cCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCc-hhhhc
Q 001805 278 NGI------WNVYDGINIIGS---RL-----HHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDK-HLLMT 340 (1011)
Q Consensus 278 ~~~------~~~~~~~~~l~~---~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~ 340 (1011)
.+. ....-.++.+++ .+ .+++=++|+|+++... ....|+..+..-.+++.+|++|.+. .++..
T Consensus 74 PD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpT 153 (325)
T PRK06871 74 PDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPT 153 (325)
T ss_pred CCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchH
Confidence 000 000011222222 22 2455678899997653 3555655554445677777777665 34333
Q ss_pred -cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchH
Q 001805 341 -HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLA 392 (1011)
Q Consensus 341 -~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLa 392 (1011)
......+.+.+++.+++.+.+..... .+ ...+...+..++|.|+.
T Consensus 154 I~SRC~~~~~~~~~~~~~~~~L~~~~~-----~~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 154 IYSRCQTWLIHPPEEQQALDWLQAQSS-----AE--ISEILTALRINYGRPLL 199 (325)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHhc-----cC--hHHHHHHHHHcCCCHHH
Confidence 22346889999999999988876541 11 12355678889999963
No 204
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.91 E-value=0.04 Score=68.93 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=40.1
Q ss_pred ccccccchhHHHHHHHhhc----CCCCceEEEEEecCCchhHHHHHHHHHHhhccC
Q 001805 192 KNLVGIDSHLKNLRLLMDK----GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF 243 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1011)
...+|.+.-.++|.+++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4578988888888776641 222345799999999999999999999876544
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.035 Score=65.09 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=89.3
Q ss_pred cccccccchhHHHHHHHhhc----CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHH
Q 001805 191 LKNLVGIDSHLKNLRLLMDK----GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
..+-+|.+.-.++|.++|.- ..-...+++++|++|+|||.|++.+++.+...|-.... -.+++.++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sL-GGvrDEAE--------- 391 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISL-GGVRDEAE--------- 391 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEec-CccccHHH---------
Confidence 35678999999999998872 22345799999999999999999999988877754322 12222211
Q ss_pred HHHHHHhCCCCCCcccccc-chHHHHhhhcCCcEEEEEccCCCHHH----------HHHHhcCCC-CCC--------CCc
Q 001805 267 QLLSQLLKLPNNGIWNVYD-GINIIGSRLHHKKVLLLIDDVVDIKQ----------LECLAGKRE-WFG--------PGS 326 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~~~----------~~~l~~~~~-~~~--------~gs 326 (1011)
+.+....-...+.. .++.++ ...-+.=+++||.++.... ++-|-+..+ .|. .=|
T Consensus 392 -----IRGHRRTYIGamPGrIiQ~mk-ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 392 -----IRGHRRTYIGAMPGKIIQGMK-KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -----hccccccccccCChHHHHHHH-HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 11111111111111 122222 2234556888998865321 222221110 000 114
Q ss_pred eE-EEEeCCc-h-h-hhccCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 327 RI-IITSRDK-H-L-LMTHGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 327 ~I-IiTTR~~-~-~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
.| .|||-+. + + ..-.....++++.+-+++|-++.-.++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 44 3454433 2 1 1112345689999999999988877765
No 206
>PRK06526 transposase; Provisional
Probab=96.87 E-value=0.0022 Score=68.32 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=23.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
.+-+.|+|++|+|||+||.++.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3468999999999999999998865543
No 207
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.00028 Score=73.05 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=30.6
Q ss_pred CCCCCCCCeeecCCCCCCCCCCCcccCCccCCcEEECCCCCCe
Q 001805 717 LSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFV 759 (1011)
Q Consensus 717 l~~l~~L~~L~Ls~~~l~~~~~p~~l~~l~~L~~L~L~~n~l~ 759 (1011)
...++.+..|+|+.+++..-.--+.+..+++|..|.++++.+.
T Consensus 220 se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 4455666678888887754334456778889999999888764
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.85 E-value=0.051 Score=68.65 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=40.6
Q ss_pred cccccccchhHHHHHHHhhcC------CC-CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 191 LKNLVGIDSHLKNLRLLMDKG------SN-DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
...++|.+..++.+...+... .+ ....+.+.|++|+|||++|++++......
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 456899999999998877632 11 13568899999999999999999876443
No 209
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.02 Score=63.60 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=92.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--C---CceeEeeehhhhh--ccCChHHHHHHHHHHHh
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--F---EGSSFLANVREIS--KEGGLISLQKQLLSQLL 273 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f---~~~~~~~~~~~~~--~~~~l~~l~~~ll~~l~ 273 (1011)
-+++...+..+ .-.....+.|+.|+||+++|.+++..+--. - .++.- ...+.+. ..+++..+ .
T Consensus 11 ~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C-~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 11 YEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHC-RGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCC-HHHHHHHcCCCCCEEEE--------e
Confidence 44555555432 335788999999999999999998865221 1 11100 0000000 00000000 0
Q ss_pred CCCCCCccccccchHHHHhhh-----cCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCch-hhhc-cCcC
Q 001805 274 KLPNNGIWNVYDGINIIGSRL-----HHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDKH-LLMT-HGVD 344 (1011)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~L-----~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~-~~~~ 344 (1011)
.......-.+++ +..+.+.+ .+++=++|+|+++... ....|+..+..-.+++.+|++|.+.+ ++.. ....
T Consensus 81 p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000000000111 11122222 2455688999997643 35555555544456777777776653 4433 2234
Q ss_pred cEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHH
Q 001805 345 EVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 345 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal 393 (1011)
..+.+.+++.+++.+.+.... + .+ .+.+..++..++|.|...
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~----~~--~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV-T----MS--QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc-C----CC--HHHHHHHHHHcCCCHHHH
Confidence 578999999999988875432 1 11 234667899999999643
No 210
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0064 Score=64.12 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=28.6
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh----ccCCceeEee
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS----HKFEGSSFLA 250 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~----~~f~~~~~~~ 250 (1011)
-|+|.++|+||.|||+|.++++++++ ++|..+..+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE 216 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE 216 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE
Confidence 48999999999999999999999653 4555555543
No 211
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.82 E-value=0.00028 Score=85.46 Aligned_cols=129 Identities=23% Similarity=0.127 Sum_probs=73.3
Q ss_pred ccccceecccccccC-CcCCcccCCCCCCcEEEcCCCCCCCCCCCCCCCCcccccccCCCCCc-ccCCCCCCCCCCCeee
Q 001805 650 LKSLKKLYLSGCSKL-KNVPENLGKVESLEVLELSGCKGPPVSSSWYLPFPISLKRSCSDPTA-LRLPSLSGLWSLRKLD 727 (1011)
Q Consensus 650 l~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~l~~-~~l~~l~~l~~L~~L~ 727 (1011)
||+|++|.++|-... ..+-.-..++++|..||+|++.+.....+..+++|+.|...+-.+.. ..+-.+.+|++|+.||
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 556666666552211 11222344566677777777776545666667777776644333322 3344467788999999
Q ss_pred cCCCCCCCCC-CC----cccCCccCCcEEECCCCCCee--cCccccCCCCCCEEEEcC
Q 001805 728 LSDCDLGEGA-IP----NDIGNLWSLEELYLSKNSFVT--APASINRLFNLEELELED 778 (1011)
Q Consensus 728 Ls~~~l~~~~-~p----~~l~~l~~L~~L~L~~n~l~~--lp~~i~~l~~L~~L~L~~ 778 (1011)
+|........ +. +.-..+|+|+.||.|++.+.. +-.-+..-++|+.+.+-+
T Consensus 227 IS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 227 ISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred ccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 9887654322 11 122347889999999887652 222333445555554443
No 212
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.79 E-value=0.0019 Score=71.37 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
.-+.++|.+|+|||.||.++++.+..+--.+.|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56999999999999999999998765544556654
No 213
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.79 E-value=0.034 Score=59.93 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=22.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
+-|.|.|.+|+|||+||++++......
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 357799999999999999998865433
No 214
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.77 E-value=0.005 Score=62.67 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH-h-hccCCceeEeeehhhhhccCCh--HHH-------
Q 001805 196 GIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL-T-SHKFEGSSFLANVREISKEGGL--ISL------- 264 (1011)
Q Consensus 196 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~l--~~l------- 264 (1011)
.+..+-....+.|. +..+|.+.|++|.|||.||.+.+-+ + ...|+..++....-+..+.-+. -++
T Consensus 4 p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 4 PKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp --SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 34455555555554 3458999999999999999888753 2 4678877777544322111110 000
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHH----------hhhcCC---cEEEEEccCCC--HHHHHHHhcCCCCCCCCceEE
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIG----------SRLHHK---KVLLLIDDVVD--IKQLECLAGKREWFGPGSRII 329 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~----------~~L~~k---~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~II 329 (1011)
...+...+...- .....+.+. ..++++ ...||+|++.+ ..++..++... +.||++|
T Consensus 80 ~~p~~d~l~~~~------~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii 150 (205)
T PF02562_consen 80 LRPIYDALEELF------GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKII 150 (205)
T ss_dssp THHHHHHHTTTS-------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEE
T ss_pred HHHHHHHHHHHh------ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEE
Confidence 111111110000 001111111 122333 47899999965 45788877664 7899999
Q ss_pred EEeCCch
Q 001805 330 ITSRDKH 336 (1011)
Q Consensus 330 iTTR~~~ 336 (1011)
++--..+
T Consensus 151 ~~GD~~Q 157 (205)
T PF02562_consen 151 ITGDPSQ 157 (205)
T ss_dssp EEE----
T ss_pred EecCcee
Confidence 9976543
No 215
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.029 Score=65.05 Aligned_cols=151 Identities=15% Similarity=0.206 Sum_probs=84.7
Q ss_pred ccccchhHHHHHHHhh-----------cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChH
Q 001805 194 LVGIDSHLKNLRLLMD-----------KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLI 262 (1011)
Q Consensus 194 ~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~ 262 (1011)
+=|.++-..+|.+... .+-...+-|..+|+||.|||++|+++++..+..|-.+-
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk--------------- 500 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK--------------- 500 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc---------------
Confidence 3346666666654432 23345678999999999999999999997766654320
Q ss_pred HHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH-------------HHHHHhcCCCCCCCCceEE
Q 001805 263 SLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK-------------QLECLAGKREWFGPGSRII 329 (1011)
Q Consensus 263 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~II 329 (1011)
..++++...+..+ ....+.+++.-+-.+.+|.||.++... .+..|+...+.......|+
T Consensus 501 --gpEL~sk~vGeSE------r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ 572 (693)
T KOG0730|consen 501 --GPELFSKYVGESE------RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVL 572 (693)
T ss_pred --CHHHHHHhcCchH------HHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEE
Confidence 0012222111110 011112222223456888888875432 2444555554333333443
Q ss_pred E---EeCCchh----hhccCcCcEEEcCCCCHHHHHHHHHHHhhc
Q 001805 330 I---TSRDKHL----LMTHGVDEVYKLRELHDDNALRLFCKKAFK 367 (1011)
Q Consensus 330 i---TTR~~~~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 367 (1011)
| |-|...+ +.-...++++.++.-+.+.-.++|..++-+
T Consensus 573 ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 573 VIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3 2333322 222235788889888888889999988844
No 216
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.73 E-value=0.0038 Score=65.74 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=37.6
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
..|.++|..+-....++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455666544455689999999999999999999887665556677775
No 217
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.72 E-value=0.014 Score=73.10 Aligned_cols=51 Identities=20% Similarity=0.298 Sum_probs=39.7
Q ss_pred cccccccchhHHHHHHHhhc-------CCCCceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 191 LKNLVGIDSHLKNLRLLMDK-------GSNDVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
...++|-+.-++.+.+.+.. ......++.++|++|+|||.||+++++.+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 35789999999998877742 1122357899999999999999999887643
No 218
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.72 E-value=0.055 Score=67.26 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=38.4
Q ss_pred cccccccchhHHHHHHHhhcC------CC-CceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 191 LKNLVGIDSHLKNLRLLMDKG------SN-DVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
...++|.+..++.+...+... .+ ...++.++|++|+|||+||+++++.+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 356889998888887776621 11 234688999999999999999998763
No 219
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.71 E-value=0.047 Score=67.65 Aligned_cols=53 Identities=17% Similarity=0.289 Sum_probs=41.8
Q ss_pred cccccccchhHHHHHHHhhc----CCCCceEEEEEecCCchhHHHHHHHHHHhhccC
Q 001805 191 LKNLVGIDSHLKNLRLLMDK----GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF 243 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1011)
..+.+|.+.-.++|.+++.. +.....++.++|++|+||||+|+.++..+...|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 34688999999999887762 122356899999999999999999998765544
No 220
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.70 E-value=0.025 Score=64.83 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=25.1
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
.+.+|.++|.+|+||||+|..++..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999998877654
No 221
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.65 E-value=0.074 Score=61.64 Aligned_cols=183 Identities=17% Similarity=0.232 Sum_probs=106.0
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc----CCc--eeEeeehhhhhccCChHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK----FEG--SSFLANVREISKEGGLIS 263 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~--~~~~~~~~~~~~~~~l~~ 263 (1011)
..+++||-+.-...|...+..+. -...-...|+-|+||||+|+-++..+-.. .+. .|.. ..++... ...+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~--Ck~I~~g-~~~D 89 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS--CKEINEG-SLID 89 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh--hHhhhcC-Cccc
Confidence 34678999999999999887542 24566789999999999999998743111 110 0110 0111111 0111
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHhh---h-----cCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeC
Q 001805 264 LQKQLLSQLLKLPNNGIWNVYDGINIIGSR---L-----HHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSR 333 (1011)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~---L-----~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR 333 (1011)
+.+ +-.... .+++.+++. . .++.=+.|+|.|+.. ..+..|+..+..-.....+|..|.
T Consensus 90 viE-----iDaASn-------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 90 VIE-----IDAASN-------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred chh-----hhhhhc-------cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 000 000011 122222222 1 345567899999765 458888877765455666676666
Q ss_pred Cch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCc
Q 001805 334 DKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 334 ~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlP 390 (1011)
+.+ +... ....+.|.++.++.++-...+...+-...... .++...-|++..+|-.
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~--e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINI--EEDALSLIARAAEGSL 214 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCcc--CHHHHHHHHHHcCCCh
Confidence 653 3221 23346789999999988888877664333222 2455566777777744
No 222
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.65 E-value=0.021 Score=71.82 Aligned_cols=51 Identities=16% Similarity=0.324 Sum_probs=39.3
Q ss_pred cccccccchhHHHHHHHhhcC------CCC-ceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 191 LKNLVGIDSHLKNLRLLMDKG------SND-VRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
...++|.+..++.|...+... .+. ...+.++|+.|+|||++|+++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 456899999999988777521 111 247889999999999999999986643
No 223
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.64 E-value=0.0023 Score=64.32 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=25.8
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
.-+.++|.+|+|||.||.++++....+=-.+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 46999999999999999999987655433455554
No 224
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.63 E-value=0.0048 Score=61.05 Aligned_cols=34 Identities=29% Similarity=0.233 Sum_probs=26.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987766545555554
No 225
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.55 E-value=0.018 Score=64.39 Aligned_cols=144 Identities=19% Similarity=0.147 Sum_probs=79.4
Q ss_pred cccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC---------------------CceeEeee
Q 001805 193 NLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF---------------------EGSSFLAN 251 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~~~~ 251 (1011)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 356677777777777664333445699999999999999999998765332 1222221
Q ss_pred hhhhhccCC---hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHHH--HHHHhcCCCCCCCCc
Q 001805 252 VREISKEGG---LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQ--LECLAGKREWFGPGS 326 (1011)
Q Consensus 252 ~~~~~~~~~---l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~--~~~l~~~~~~~~~gs 326 (1011)
.+.... ..+..+++........ ..++.-++|+|+++.... ...+..........+
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 111111 1222222222211000 035667899999976543 444544444446677
Q ss_pred eEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHH
Q 001805 327 RIIITSRDK-HLLMT-HGVDEVYKLRELHDDNA 357 (1011)
Q Consensus 327 ~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea 357 (1011)
++|++|.+. .+... ......+++.+.+..+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~~~~ 173 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSRLEA 173 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchHHHH
Confidence 888888744 23221 12234566766444333
No 226
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.54 E-value=0.083 Score=58.65 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=57.0
Q ss_pred CCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc-hhhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCC
Q 001805 296 HKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK-HLLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQP 371 (1011)
Q Consensus 296 ~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 371 (1011)
++.=++|+|+++.. .....|+..+..-.+++.+|++|.+. .++.. ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34457888999754 34566665555446677766666554 44433 2234688999999999998886642 1
Q ss_pred CccHHHHHHHHHHHhCCCchHHHH
Q 001805 372 KKGYEQLSEWVTKYSGGLPLALKV 395 (1011)
Q Consensus 372 ~~~~~~l~~~i~~~~~GlPLal~~ 395 (1011)
.+ ...++..++|.|+....
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALA 224 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHH
Confidence 11 12357788999974443
No 227
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.035 Score=64.63 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=80.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhh-hhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVRE-ISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
...|.|.|..|+|||+||+++++.+...- .+++..+.. ......+..+++.+ ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHH------------------HHHHHHH
Confidence 45789999999999999999999876332 333322211 11122233333322 2334455
Q ss_pred hcCCcEEEEEccCCCHH--------H-------HHHHh----cCCCCCCCCce--EEEEeCCchhhh-----ccCcCcEE
Q 001805 294 LHHKKVLLLIDDVVDIK--------Q-------LECLA----GKREWFGPGSR--IIITSRDKHLLM-----THGVDEVY 347 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~~--------~-------~~~l~----~~~~~~~~gs~--IIiTTR~~~~~~-----~~~~~~~~ 347 (1011)
+...+-+|||||++-.- | +..++ ..+. ..+.+ +|.|....+... ..-.....
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 67789999999985321 0 11111 1111 23344 344444333221 12234567
Q ss_pred EcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCC
Q 001805 348 KLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGL 389 (1011)
Q Consensus 348 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~Gl 389 (1011)
.+..++.++-.++++... ..........++ .-+..+|+|.
T Consensus 569 ~L~ap~~~~R~~IL~~~~-s~~~~~~~~~dL-d~ls~~TEGy 608 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIF-SKNLSDITMDDL-DFLSVKTEGY 608 (952)
T ss_pred ecCCcchhHHHHHHHHHH-HhhhhhhhhHHH-HHHHHhcCCc
Confidence 888888888877765543 322211112222 2266777764
No 228
>PRK04132 replication factor C small subunit; Provisional
Probab=96.52 E-value=0.062 Score=66.22 Aligned_cols=149 Identities=13% Similarity=0.096 Sum_probs=88.2
Q ss_pred cCCchhHHHHHHHHHHhh-ccCCc-eeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEE
Q 001805 223 MGGIGKTTLARVVYDLTS-HKFEG-SSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVL 300 (1011)
Q Consensus 223 ~gGiGKTtLA~~~~~~~~-~~f~~-~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~L 300 (1011)
+.++||||+|.++++++- +.+.. ...++ .+...+...+. +++..+...... -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcCCc---------------CCCCCEE
Confidence 789999999999998762 22322 23332 22223443333 333332211100 0124569
Q ss_pred EEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHH
Q 001805 301 LLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYE 376 (1011)
Q Consensus 301 lVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 376 (1011)
+|+|+++... +...|...+......+++|++|.+.. +... ......+++.+++.++..+.+.+.+-..... -.+
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCH
Confidence 9999998653 56666655554456677777666543 3222 1234688999999999988877665332221 124
Q ss_pred HHHHHHHHHhCCCchHH
Q 001805 377 QLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 377 ~l~~~i~~~~~GlPLal 393 (1011)
+....|++.++|.+...
T Consensus 712 e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 712 EGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 56788999999988533
No 229
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.032 Score=62.70 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=73.4
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS 292 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 292 (1011)
.....+.+.|++|+|||+||..++. ...|+.+-.+. ...--++.+-.+- .........
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS----pe~miG~sEsaKc----------------~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS----PEDMIGLSESAKC----------------AHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC----hHHccCccHHHHH----------------HHHHHHHHH
Confidence 3456788999999999999999876 56787655443 0001111110000 001112222
Q ss_pred hhcCCcEEEEEccCCCHHHH------------HHH---hcCCCCCCCCce--EEEEeCCchhhhccCc----CcEEEcCC
Q 001805 293 RLHHKKVLLLIDDVVDIKQL------------ECL---AGKREWFGPGSR--IIITSRDKHLLMTHGV----DEVYKLRE 351 (1011)
Q Consensus 293 ~L~~k~~LlVlDdv~~~~~~------------~~l---~~~~~~~~~gs~--IIiTTR~~~~~~~~~~----~~~~~l~~ 351 (1011)
.-+..--.||+||++..-+| +.| +...+ ..|-| |+-||....++..++. ...+.|+.
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p--pkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP--PKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCC--CCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 33445568999999765443 222 22222 23444 4557777778777653 45788988
Q ss_pred CCH-HHHHHHHHHH
Q 001805 352 LHD-DNALRLFCKK 364 (1011)
Q Consensus 352 L~~-~ea~~Lf~~~ 364 (1011)
++. ++..+.++..
T Consensus 672 l~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 672 LTTGEQLLEVLEEL 685 (744)
T ss_pred cCchHHHHHHHHHc
Confidence 887 6666666554
No 230
>PRK08118 topology modulation protein; Reviewed
Probab=96.48 E-value=0.002 Score=64.08 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc---CCceeE
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK---FEGSSF 248 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~---f~~~~~ 248 (1011)
.|.|+|++|+||||||+.+++...-. ++...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999876432 555444
No 231
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.44 E-value=0.0038 Score=68.72 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=40.5
Q ss_pred cccccchhHHHHHHHhhcC----CCCceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 193 NLVGIDSHLKNLRLLMDKG----SNDVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.++|.++.++++.+++... ....++++++|++|.||||||+++++.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999888632 22458899999999999999999988653
No 232
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.43 E-value=0.0033 Score=65.43 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=29.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
.++|.|..|.|||||+..+.......|+.+..+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5789999999999999999998899996665553
No 233
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.42 E-value=0.0027 Score=59.52 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=21.4
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+|+|.|++|+||||+|+++++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 234
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.42 E-value=0.04 Score=69.35 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=65.5
Q ss_pred cccccccchhHHHHHHHhhcC------CC-CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHH
Q 001805 191 LKNLVGIDSHLKNLRLLMDKG------SN-DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLIS 263 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~ 263 (1011)
...++|-+.-++.|...+... .+ ....+.++|+.|+|||+||+++++.+-..-...+.+ ++.+....+....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHH
Confidence 357899999999988777521 11 234577899999999999999998764332222222 2222222222211
Q ss_pred HHHHHHHHHhCCCCCCccccccchHHHHhhhcCCc-EEEEEccCCCH--HHHHHHhcCCC
Q 001805 264 LQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKK-VLLLIDDVVDI--KQLECLAGKRE 320 (1011)
Q Consensus 264 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~-~LlVlDdv~~~--~~~~~l~~~~~ 320 (1011)
+.+.+..-. ... ....+.+.++.++ -+++||+++.. +..+.|...+.
T Consensus 587 --------l~g~~~gyv-g~~-~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 --------LIGSPPGYV-GYN-EGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred --------hcCCCCccc-CcC-ccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 122111111 011 1223445555555 58889999753 34555554443
No 235
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.39 E-value=0.0078 Score=61.85 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=64.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEe-eehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL-ANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
.+|.|.|+.|.||||++.++...+.......++. .+-.+..... ...+..+ ... ..+.....+.++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-----~~~~i~q----~~v-g~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-----KRSLINQ----REV-GLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-----ccceeee----ccc-CCCccCHHHHHHHHh
Confidence 4789999999999999999888766554444333 2111110000 0000000 000 111233456677778
Q ss_pred cCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchhh
Q 001805 295 HHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLL 338 (1011)
Q Consensus 295 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~ 338 (1011)
+..+=.|++|.+.+.+.++...... ..|..++.|+......
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 8788899999998887766544432 3466677777766543
No 236
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.39 E-value=0.033 Score=56.60 Aligned_cols=56 Identities=21% Similarity=0.266 Sum_probs=42.5
Q ss_pred cccccccccchhHHHHHHHhh---cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc
Q 001805 189 GILKNLVGIDSHLKNLRLLMD---KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG 245 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 245 (1011)
..-..++|.|...+.|.+--. .+ -...-|.+||.-|.|||.|++++.+.+......
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEG-LPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcC-CcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 344679999999888855332 22 223458899999999999999999988777665
No 237
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.36 E-value=0.033 Score=55.08 Aligned_cols=137 Identities=18% Similarity=0.162 Sum_probs=69.3
Q ss_pred ccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc--------------------CCceeEeeehhhh
Q 001805 196 GIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK--------------------FEGSSFLANVREI 255 (1011)
Q Consensus 196 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------------------f~~~~~~~~~~~~ 255 (1011)
|-+...+.|..++..+ .-...+.++|..|+||+++|.++++.+-.. ++...++... ..
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KK 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TS
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cc
Confidence 4455667777777543 235678999999999999999999865221 2222222100 00
Q ss_pred hccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeC
Q 001805 256 SKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSR 333 (1011)
Q Consensus 256 ~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR 333 (1011)
.......++. ++...+... -..+++=++|+||++.. +...+|+..+.....++++|++|+
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~-----------------~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLS-----------------PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred cchhhHHHHH-HHHHHHHHH-----------------HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 0001111111 222221000 01234568899999763 445555555544467889998888
Q ss_pred Cchh-hhc-cCcCcEEEcCCC
Q 001805 334 DKHL-LMT-HGVDEVYKLREL 352 (1011)
Q Consensus 334 ~~~~-~~~-~~~~~~~~l~~L 352 (1011)
+..- +.. ......+.+.++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~l 161 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPL 161 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE---
T ss_pred ChHHChHHHHhhceEEecCCC
Confidence 7753 222 122345566554
No 238
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.36 E-value=0.012 Score=62.14 Aligned_cols=49 Identities=24% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC------CceeEee
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF------EGSSFLA 250 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 250 (1011)
..|.++|..+-....++.|+|.+|+|||+||..++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 345556654445568999999999999999999987654444 5566765
No 239
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.34 E-value=0.0074 Score=64.17 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=33.7
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVR 253 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 253 (1011)
-+-++|.|.+|.||||||+.+++.++.+|+..+++..+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iG 107 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVG 107 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec
Confidence 356999999999999999999999988888888876553
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.023 Score=57.28 Aligned_cols=37 Identities=32% Similarity=0.556 Sum_probs=31.9
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
...+|.+.|+.|+||||+|++++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3468999999999999999999999887777777763
No 241
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.30 E-value=0.0064 Score=63.70 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
+..|.++|..+-....++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 5 i~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 5 CKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34566666544455689999999999999999999887655545566664
No 242
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.098 Score=57.94 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=47.8
Q ss_pred cEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCCch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCc
Q 001805 298 KVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRDKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKK 373 (1011)
Q Consensus 298 ~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 373 (1011)
+-++|+|+++..+ ....+...+.....+..+|++|.+.. +... ......+.+.+++.+++.+.+.... ...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCc
Confidence 3344568876532 33333333322234567777777754 3322 1224578899999999988885531 111
Q ss_pred cHHHHHHHHHHHhCCCchHH
Q 001805 374 GYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 374 ~~~~l~~~i~~~~~GlPLal 393 (1011)
.+ + .+..++|-|+..
T Consensus 189 --~~-~--~l~~~~g~p~~~ 203 (325)
T PRK08699 189 --PE-E--RLAFHSGAPLFD 203 (325)
T ss_pred --HH-H--HHHHhCCChhhh
Confidence 11 1 235678988643
No 243
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.28 E-value=0.06 Score=65.67 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=82.6
Q ss_pred ccccccchhHHHHHHHhhc----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCCh
Q 001805 192 KNLVGIDSHLKNLRLLMDK----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGL 261 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l 261 (1011)
.++.|.+...+++.+.... +..-.+-|.|+|++|.|||++|+.++......|- .+. ..+.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~~~------ 221 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GSDF------ 221 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hHHh------
Confidence 4566766666665554431 0111345999999999999999999887654331 111 1100
Q ss_pred HHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------------HHHHHhcCCCCCC--
Q 001805 262 ISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------------QLECLAGKREWFG-- 323 (1011)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~-- 323 (1011)
. ....+.. .......+.......+.+|++|+++... .+..++...+.+.
T Consensus 222 ---~----~~~~g~~------~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 222 ---V----EMFVGVG------ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred ---H----Hhhhccc------HHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 0 0000000 0011122222334568899999986541 1333333333222
Q ss_pred CCceEEEEeCCchhhh-----ccCcCcEEEcCCCCHHHHHHHHHHHhhc
Q 001805 324 PGSRIIITSRDKHLLM-----THGVDEVYKLRELHDDNALRLFCKKAFK 367 (1011)
Q Consensus 324 ~gs~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 367 (1011)
.+.-||.||...+.+. ....+..+.++..+.++-.+++..+..+
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 2444555776554322 1234677889999998888888777643
No 244
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.27 E-value=0.12 Score=57.65 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=36.3
Q ss_pred chhHHHHHHHhhcCC-CCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 198 DSHLKNLRLLMDKGS-NDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 198 ~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
+.-.+.|.+.+.... .+..+|+|.|.=|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776543 567899999999999999999999888776
No 245
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.27 E-value=0.00039 Score=71.12 Aligned_cols=35 Identities=11% Similarity=0.147 Sum_probs=16.6
Q ss_pred cCCCCCeeeeCCCCCCCc----CcccccCcchhhhcccC
Q 001805 578 ALKYHPTWNLSGLLKFSN----FPEIMTNMEHVLELHLE 612 (1011)
Q Consensus 578 ~L~~L~~L~L~~~~~l~~----lp~~~~~l~~L~~L~L~ 612 (1011)
.+..+..++||||..-.+ +...+.+-.+|+..+++
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs 66 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS 66 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh
Confidence 345555577777643332 22333344444444444
No 246
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.059 Score=55.05 Aligned_cols=163 Identities=18% Similarity=0.295 Sum_probs=89.4
Q ss_pred cccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCCh
Q 001805 193 NLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGL 261 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l 261 (1011)
++=|.+..+++|.+.+-. +-..++-|..+|++|.|||-+|++.+.+-...|-.- ..+
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL----------AgP-- 239 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL----------AGP-- 239 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh----------cch--
Confidence 455677777777665431 222346688999999999999999887654433210 001
Q ss_pred HHHHHHHHHHHhCCCCCCccccccchHHHHhhh----cCCcEEEEEccCCCHH--------------H--HHHHhcCCCC
Q 001805 262 ISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL----HHKKVLLLIDDVVDIK--------------Q--LECLAGKREW 321 (1011)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~k~~LlVlDdv~~~~--------------~--~~~l~~~~~~ 321 (1011)
++.....+ ++...++... ...+.+|.+|.++... | .-.++..++.
T Consensus 240 -----QLVQMfIG----------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 240 -----QLVQMFIG----------DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred -----HHHhhhhc----------chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 11111111 1222222221 3467888899874321 1 3344555555
Q ss_pred CCCC--ceEEEEeCCchh-----hhccCcCcEEEcCCCCHHHHHHHHHHHhhcc-CCCCccHHHHHHHH
Q 001805 322 FGPG--SRIIITSRDKHL-----LMTHGVDEVYKLRELHDDNALRLFCKKAFKT-HQPKKGYEQLSEWV 382 (1011)
Q Consensus 322 ~~~g--s~IIiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~l~~~i 382 (1011)
|.+. .+||..|-.-++ +.....++.++.+--+++.-.+++.-+..+- ..+.-+++++++.-
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT 373 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARST 373 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc
Confidence 5543 456666643333 3333445667776666666666666665442 33455788887643
No 247
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.25 E-value=0.0076 Score=62.64 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=34.4
Q ss_pred HhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 207 LMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 207 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
+|..+-...+++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44444445689999999999999999999877665556778876
No 248
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.25 E-value=0.037 Score=68.07 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=38.7
Q ss_pred ccccccchhHHHHHHHhhcC-------CCCceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 192 KNLVGIDSHLKNLRLLMDKG-------SNDVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
..++|-+..++.|...+... ......+.++|++|+|||++|++++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999988877621 11235788999999999999999988773
No 249
>PRK04296 thymidine kinase; Provisional
Probab=96.24 E-value=0.0057 Score=62.38 Aligned_cols=112 Identities=19% Similarity=0.091 Sum_probs=60.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCC--ccccccchHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNG--IWNVYDGINIIGSR 293 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~--~~~~~~~~~~l~~~ 293 (1011)
.++.|+|..|.||||+|..++.+...+-..+.++... .....+.. .+++++ +..... .....+....+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~~----~i~~~l-g~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGEG----KVVSRI-GLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccCC----cEecCC-CCcccceEeCChHHHHHHHHh-
Confidence 4788999999999999999988876554444443200 01111111 122221 111100 1112222333333
Q ss_pred hcCCcEEEEEccCCC--HHHHHHHhcCCCCCCCCceEEEEeCCchh
Q 001805 294 LHHKKVLLLIDDVVD--IKQLECLAGKREWFGPGSRIIITSRDKHL 337 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~~ 337 (1011)
..++.-+||+|.+.- .+++..+...+. ..|..||+|.++.+.
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 233556899999865 344554544322 468899999998543
No 250
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.24 E-value=0.0064 Score=58.49 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=32.6
Q ss_pred cccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 195 VGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 195 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577778888877776433344568999999999999999887743
No 251
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.24 E-value=0.0067 Score=59.95 Aligned_cols=62 Identities=27% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCCCCCCeeecCCCCCCCCCCCccc-CCccCCcEEECCCCCCeecC--ccccCCCCCCEEEEcCCc
Q 001805 717 LSGLWSLRKLDLSDCDLGEGAIPNDI-GNLWSLEELYLSKNSFVTAP--ASINRLFNLEELELEDCK 780 (1011)
Q Consensus 717 l~~l~~L~~L~Ls~~~l~~~~~p~~l-~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~ 780 (1011)
+..++.|.+|.|++|++.. +-..+ ..+++|..|.|.+|++..+- ..+..+++|++|.+-+|+
T Consensus 60 lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEecCCccee--eccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 4445555566666665533 22222 23455666666666555442 224455666666665554
No 252
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.22 E-value=0.023 Score=56.44 Aligned_cols=44 Identities=30% Similarity=0.411 Sum_probs=32.5
Q ss_pred ccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHH
Q 001805 194 LVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 194 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
+||.+..+.++.+.+..-.....-|.|+|..|.||+.+|+++.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHH
Confidence 47888888888777764333335677999999999999999977
No 253
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.22 E-value=0.014 Score=64.58 Aligned_cols=104 Identities=12% Similarity=0.075 Sum_probs=57.8
Q ss_pred HHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCce-eEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccc
Q 001805 204 LRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGS-SFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWN 282 (1011)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~ 282 (1011)
+.+.+..- ...+-++|+|.+|+|||||++.+++.+..+.+.+ +++..+. .......++.+.+...+..........
T Consensus 123 vID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 123 VVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred hhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 45555422 2234579999999999999999999877655333 3433232 233455666666665433211111111
Q ss_pred cc-c---chHHHHhhh--cCCcEEEEEccCCCHH
Q 001805 283 VY-D---GINIIGSRL--HHKKVLLLIDDVVDIK 310 (1011)
Q Consensus 283 ~~-~---~~~~l~~~L--~~k~~LlVlDdv~~~~ 310 (1011)
.. . ....+.+++ .+++++||+|++....
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 00 0 111111122 5789999999996543
No 254
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0047 Score=58.77 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=28.1
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhcc-CCceeEe
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHK-FEGSSFL 249 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 249 (1011)
--|+|.||+|+||||+++.+++.++.. |...-|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 458999999999999999999988766 7655444
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.18 E-value=0.011 Score=62.98 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=27.7
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 345689999999999999999999988332334444
No 256
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.046 Score=65.93 Aligned_cols=150 Identities=13% Similarity=0.175 Sum_probs=85.0
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc-CC-----ceeEeeehhhhhccCChHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-FE-----GSSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~-----~~~~~~~~~~~~~~~~l~~l~ 265 (1011)
+..+||+.|+.++.+.|.....+- -.++|.+|+|||++|.-++.++... -+ ..++-.++...-...
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN--PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGa------ 241 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN--PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGA------ 241 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC--CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccc------
Confidence 568999999999999997543322 3468999999999999999887543 22 223333332211111
Q ss_pred HHHHHHHhCCCCCCccccccchHHHH-hhhcCCcEEEEEccCCCH-----------HHHHHHhcCCCCCCCC-ceEE-EE
Q 001805 266 KQLLSQLLKLPNNGIWNVYDGINIIG-SRLHHKKVLLLIDDVVDI-----------KQLECLAGKREWFGPG-SRII-IT 331 (1011)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~k~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-s~II-iT 331 (1011)
.-..+.++....+. +.-+..++.|.+|.++.. +.-.-|.+.+ ..| -+.| .|
T Consensus 242 ------------kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL---ARGeL~~IGAT 306 (786)
T COG0542 242 ------------KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL---ARGELRCIGAT 306 (786)
T ss_pred ------------cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---hcCCeEEEEec
Confidence 11111122222222 222345899999987432 2223333433 233 2444 45
Q ss_pred eCCch-------hhhccCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 332 SRDKH-------LLMTHGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 332 TR~~~-------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
|-++. .+- ....+.+.|+..+.+++...+....
T Consensus 307 T~~EYRk~iEKD~AL-~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 307 TLDEYRKYIEKDAAL-ERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cHHHHHHHhhhchHH-HhcCceeeCCCCCHHHHHHHHHHHH
Confidence 54331 111 1234678999999999999986544
No 257
>PHA00729 NTP-binding motif containing protein
Probab=96.15 E-value=0.022 Score=58.74 Aligned_cols=27 Identities=33% Similarity=0.154 Sum_probs=23.3
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
+...|.|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999998754
No 258
>PRK06696 uridine kinase; Validated
Probab=96.15 E-value=0.0066 Score=63.75 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=35.5
Q ss_pred cchhHHHHHHHhhc-CCCCceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 197 IDSHLKNLRLLMDK-GSNDVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 197 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
|++.+++|.+.+.. ..+...+|+|.|.+|+||||||+++++.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56667777666643 3456789999999999999999999987754
No 259
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.15 E-value=0.03 Score=61.46 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.4
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
.+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 456889999999999999999998765444455554
No 260
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.10 E-value=0.022 Score=64.18 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=37.3
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
+.++.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 45566666544445679999999999999999999987766545566664
No 261
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.08 E-value=0.0057 Score=58.91 Aligned_cols=22 Identities=45% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEecCCchhHHHHHHHHHHh
Q 001805 218 IGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
|.|+|.+|+|||+||+++++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 262
>PRK06762 hypothetical protein; Provisional
Probab=96.07 E-value=0.022 Score=56.67 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.6
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
..+|.|.|++|+||||+|+++++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 263
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.06 E-value=0.0011 Score=61.17 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=38.8
Q ss_pred CeeecccCCCCccccCccccc-CCCCCeeeeCCCCCCCcCcccccCcchhhhcccCCccccccCcccCCCCCCcEEeecC
Q 001805 558 LVQLNVEGCNKLERLPRNISA-LKYHPTWNLSGLLKFSNFPEIMTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRD 636 (1011)
Q Consensus 558 L~~L~L~~~~~l~~lp~~l~~-L~~L~~L~L~~~~~l~~lp~~~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~ 636 (1011)
|...+|++| .++++|..+.. ...+++|+|++| .+..+|..+..|+.|+.|+++.|.+...|.-|..|.+|-.|+..+
T Consensus 55 l~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 344444442 34444443322 123444555543 445555555555555666655555555555555555555555554
Q ss_pred C
Q 001805 637 C 637 (1011)
Q Consensus 637 c 637 (1011)
+
T Consensus 133 n 133 (177)
T KOG4579|consen 133 N 133 (177)
T ss_pred C
Confidence 4
No 264
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.04 E-value=0.012 Score=57.42 Aligned_cols=33 Identities=21% Similarity=0.002 Sum_probs=24.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeE
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSF 248 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 248 (1011)
.+|-|++..|.||||+|...+-+...+=-.+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 468888888999999999888765544333444
No 265
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.044 Score=60.89 Aligned_cols=29 Identities=31% Similarity=0.323 Sum_probs=24.7
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
..++|+++|++|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45799999999999999999998766543
No 266
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.02 E-value=0.059 Score=64.13 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=38.1
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
...+++|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3457999999999998776432 33457899999999999999998643
No 267
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.055 Score=62.03 Aligned_cols=150 Identities=14% Similarity=0.212 Sum_probs=86.6
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
..-|.+||++|.|||-||+++++.-+..|-.+ + + . +++....+.. .......+.+.-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV-----------K-G-P----ELlNkYVGES------ErAVR~vFqRAR 601 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV-----------K-G-P----ELLNKYVGES------ERAVRQVFQRAR 601 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEee-----------c-C-H----HHHHHHhhhH------HHHHHHHHHHhh
Confidence 34588999999999999999999876665321 0 0 0 1222222111 111122233333
Q ss_pred cCCcEEEEEccCCCHH-------------HHHHHhcCCCCC--CCCceEEEEeCCchh-----hhccCcCcEEEcCCCCH
Q 001805 295 HHKKVLLLIDDVVDIK-------------QLECLAGKREWF--GPGSRIIITSRDKHL-----LMTHGVDEVYKLRELHD 354 (1011)
Q Consensus 295 ~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~IIiTTR~~~~-----~~~~~~~~~~~l~~L~~ 354 (1011)
...+++|.||.++..- .+..|+..++.. ..|.-||-.|-.+++ +.-...+..+-|+.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 4679999999985421 245555555432 245566666654443 22234567888999999
Q ss_pred HHHHHHHHHHhhccCC---CCccHHHHHHHHHHHhCCC
Q 001805 355 DNALRLFCKKAFKTHQ---PKKGYEQLSEWVTKYSGGL 389 (1011)
Q Consensus 355 ~ea~~Lf~~~a~~~~~---~~~~~~~l~~~i~~~~~Gl 389 (1011)
+|-.+.+....-.... ..-++.++++. .+|.|.
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 9999999877742122 12345555543 244454
No 268
>PRK07261 topology modulation protein; Provisional
Probab=96.02 E-value=0.023 Score=56.80 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=20.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 269
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.02 E-value=0.011 Score=60.36 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=26.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
++++.++|+.|+||||.+..++.+.+.+-..+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 36899999999999999988887766553334444
No 270
>PRK07667 uridine kinase; Provisional
Probab=96.01 E-value=0.013 Score=59.99 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=32.3
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
++.+...+....+...+|+|.|.+|+||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555665444556899999999999999999999877543
No 271
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.99 E-value=0.025 Score=59.87 Aligned_cols=50 Identities=18% Similarity=0.093 Sum_probs=35.9
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
+..|.++|..+-....++.|.|.+|+|||+||.+++.....+=..++|+.
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 34566666555556789999999999999999999765434444556654
No 272
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.032 Score=61.39 Aligned_cols=99 Identities=24% Similarity=0.276 Sum_probs=58.4
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCC
Q 001805 200 HLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNG 279 (1011)
Q Consensus 200 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~ 279 (1011)
-+.++.+.|-.+--...+|.|-|-+|||||||..+++.+++.+- .+.|+. ......++.-. .+-++.....
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs------GEES~~QiklR--A~RL~~~~~~ 148 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS------GEESLQQIKLR--ADRLGLPTNN 148 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe------CCcCHHHHHHH--HHHhCCCccc
Confidence 34566677754333457899999999999999999999988777 667764 33333332211 1112221111
Q ss_pred --ccccccchHHHHhhhcCCcEEEEEccCC
Q 001805 280 --IWNVYDGINIIGSRLHHKKVLLLIDDVV 307 (1011)
Q Consensus 280 --~~~~~~~~~~l~~~L~~k~~LlVlDdv~ 307 (1011)
........+.+...-+.++-++|+|-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 1111222233333334678899999874
No 273
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.94 E-value=0.036 Score=59.14 Aligned_cols=172 Identities=20% Similarity=0.186 Sum_probs=92.4
Q ss_pred ccccccchhHHHHHHHhhcC--CCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhh--ccCChHHHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKG--SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREIS--KEGGLISLQKQ 267 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~l~~l~~~ 267 (1011)
..++|-.++..++.+++... .++..-|.|+|+.|.|||+|......+ ...+.....+......- .+-.+..+.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 46899999999998888621 123346889999999999998766655 33344333333221111 12233444444
Q ss_pred HHHHHhCCCCCCccccccchHHHHhhhc------CCcEEEEEccCCCH----HH--HHHHhcCC-CCCCCCceEEEEeCC
Q 001805 268 LLSQLLKLPNNGIWNVYDGINIIGSRLH------HKKVLLLIDDVVDI----KQ--LECLAGKR-EWFGPGSRIIITSRD 334 (1011)
Q Consensus 268 ll~~l~~~~~~~~~~~~~~~~~l~~~L~------~k~~LlVlDdv~~~----~~--~~~l~~~~-~~~~~gs~IIiTTR~ 334 (1011)
+..++.. ......+..+....+...|. +.++..|+|.++-. .| +-.+.... ....|-+-|-+|||-
T Consensus 103 l~~e~~~-~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 103 LALELNR-IVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHhh-hheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 4444322 12222333344444444443 34689999887542 22 11221111 112456677899996
Q ss_pred chh-------hhccCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 335 KHL-------LMTHGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 335 ~~~-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
.-+ -....-..++-++.++-++-.++++...
T Consensus 182 d~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 522 1112222355566677777766665543
No 274
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.92 E-value=0.13 Score=60.19 Aligned_cols=199 Identities=12% Similarity=0.122 Sum_probs=112.0
Q ss_pred ccccccccchhHHHHHHHhhc---CCCCceEEEEEecCCchhHHHHHHHHHHhh-----ccCCce--eEeeehhhhhccC
Q 001805 190 ILKNLVGIDSHLKNLRLLMDK---GSNDVRMIGICGMGGIGKTTLARVVYDLTS-----HKFEGS--SFLANVREISKEG 259 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~~f~~~--~~~~~~~~~~~~~ 259 (1011)
++..+=+|+.|..+|...+.. .......+=|.|.+|.|||+.+..|.+.+. ..-+.. +.++. ..-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINg----m~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEING----LRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcc----eeec
Confidence 556778999999999988862 223345888999999999999999988543 222222 33332 2234
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc-----CCcEEEEEccCCCHHH--HHHHhcCCCCC-CCCceEEEE
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH-----HKKVLLLIDDVVDIKQ--LECLAGKREWF-GPGSRIIIT 331 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-----~k~~LlVlDdv~~~~~--~~~l~~~~~~~-~~gs~IIiT 331 (1011)
...++...|...+.+..... ......+..+.. .++.+|++|+++..-. -+-+-..++|- .++|+++|-
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~----~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTW----DAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred CHHHHHHHHHHhcccCcccH----HHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 46777778877754433222 233444544443 4578999998854322 12222333333 467877664
Q ss_pred eCCc--h---------hhhccCcCcEEEcCCCCHHHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHhCCCchHHHHHH
Q 001805 332 SRDK--H---------LLMTHGVDEVYKLRELHDDNALRLFCKKAFKTHQPK-KGYEQLSEWVTKYSGGLPLALKVLG 397 (1011)
Q Consensus 332 TR~~--~---------~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~GlPLal~~~~ 397 (1011)
+=.. + +....+ ...+...+-+.++-.+....+.-+...-. ...+-+|++|+.-.|..-.|+.+.-
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 4211 1 111112 23456677777777777665553321111 1223345555555555555555443
No 275
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.91 E-value=0.073 Score=54.67 Aligned_cols=168 Identities=16% Similarity=0.252 Sum_probs=95.2
Q ss_pred ccccccchhHHH---HHHHhhcC----CCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHH
Q 001805 192 KNLVGIDSHLKN---LRLLMDKG----SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISL 264 (1011)
Q Consensus 192 ~~~vGr~~~l~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l 264 (1011)
++.||.+....+ |.+.|... .-.++-|..+|++|.|||.+|+++++..+-.| .....
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~----l~vka------------ 184 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL----LLVKA------------ 184 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce----EEech------------
Confidence 568888766544 45556432 22368899999999999999999988654322 11110
Q ss_pred HHHHHHHHhCCCCCCccccccchHHHHh----hhcCCcEEEEEccCCCHH--------------HHHHHhcCCCCC--CC
Q 001805 265 QKQLLSQLLKLPNNGIWNVYDGINIIGS----RLHHKKVLLLIDDVVDIK--------------QLECLAGKREWF--GP 324 (1011)
Q Consensus 265 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~----~L~~k~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~ 324 (1011)
.+++.+..+ ++...+++ .-+.-++++.+|.++... .+.+|+..++.. +.
T Consensus 185 -t~liGehVG----------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene 253 (368)
T COG1223 185 -TELIGEHVG----------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE 253 (368)
T ss_pred -HHHHHHHhh----------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC
Confidence 122222111 12222222 223468999999875432 245555555422 34
Q ss_pred CceEEEEeCCchhhhc---cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCC
Q 001805 325 GSRIIITSRDKHLLMT---HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGL 389 (1011)
Q Consensus 325 gs~IIiTTR~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~Gl 389 (1011)
|...|-.|-+..++.. ......++..--+++|-.+++..++-.-..+.+. -.+.++++++|.
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 5555666655554332 1234556777788999999998888332222211 134566666664
No 276
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.88 E-value=0.029 Score=60.31 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=59.7
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCc
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGI 280 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~ 280 (1011)
++.+.+++.. ...+|.|.|..|.||||+++++.+.+...-..++.+.+..+... .+. .+ .... .
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~--------~q-~~v~---~ 132 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGI--------NQ-VQVN---E 132 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCc--------eE-EEeC---C
Confidence 3445555532 23589999999999999999988776442223344433322111 010 00 0000 0
Q ss_pred cccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHhc
Q 001805 281 WNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLAG 317 (1011)
Q Consensus 281 ~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~ 317 (1011)
..-......++..|+..+=.|+++++.+.+....+..
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 0011345677888888999999999999887654443
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=95.88 E-value=0.15 Score=56.44 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=24.5
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
+..+|+++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999988888766543
No 278
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.88 E-value=0.12 Score=51.30 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=43.4
Q ss_pred EEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcC-
Q 001805 218 IGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHH- 296 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~- 296 (1011)
+.|.|.+|+|||++|.+++.. ......++... ...+ .++++.+...... . ...+...+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~~d-~em~~rI~~H~~~-R-~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EAFD-DEMAERIARHRKR-R-PAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----CcCC-HHHHHHHHHHHHh-C-CCCceEeecHHHHHHHHHhc
Confidence 679999999999999998765 23455666422 2222 2344444443221 1 2222333334444444422
Q ss_pred -CcEEEEEccC
Q 001805 297 -KKVLLLIDDV 306 (1011)
Q Consensus 297 -k~~LlVlDdv 306 (1011)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2347889986
No 279
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.86 E-value=0.016 Score=61.43 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc------CCceeEee
Q 001805 203 NLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK------FEGSSFLA 250 (1011)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 250 (1011)
.|..+|..+-....++.|+|.+|+|||+||.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 4455565444556899999999999999999987543222 25667765
No 280
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.85 E-value=0.0008 Score=79.88 Aligned_cols=39 Identities=38% Similarity=0.576 Sum_probs=19.1
Q ss_pred CCCCcEEeecCCCCCcc--cCcccccccccceecccccccC
Q 001805 626 FSGLVLLNLRDCKNLLS--LPCTINGLKSLKKLYLSGCSKL 664 (1011)
Q Consensus 626 L~~L~~L~L~~c~~l~~--lp~~i~~l~~L~~L~l~~c~~l 664 (1011)
+++|+.|.+.+|..++. +-.....+++|++|++++|..+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 45566666555553221 1112234555666666665554
No 281
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.84 E-value=0.033 Score=59.08 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
+..|.++|..+-....++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34556666655556789999999999999999988765444455666664
No 282
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.80 E-value=0.18 Score=60.45 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=40.0
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
....++|....+.++.+.+..-......|.|+|..|+|||++|+++.+.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 44689999999999888776433334468899999999999999998753
No 283
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.79 E-value=0.066 Score=62.90 Aligned_cols=56 Identities=25% Similarity=0.424 Sum_probs=41.2
Q ss_pred ccccccchhHHHHHHHhhc---CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 192 KNLVGIDSHLKNLRLLMDK---GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
.+++--.+.++++..||.. +....+++.+.|++|+||||.++.+++.+. |+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 4455556778888888873 333467999999999999999999998763 4444443
No 284
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.056 Score=60.95 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=33.9
Q ss_pred ccccccchh---HHHHHHHhhcC-------CCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 192 KNLVGIDSH---LKNLRLLMDKG-------SNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 192 ~~~vGr~~~---l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
++.-|.|+. +++|.++|... ..=++-|.++|++|.|||-||++++-..
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 456677765 45556666532 1225679999999999999999997643
No 285
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.76 E-value=0.1 Score=58.16 Aligned_cols=45 Identities=22% Similarity=0.199 Sum_probs=34.5
Q ss_pred ccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH
Q 001805 194 LVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 194 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
+||....+.++.+.+..-...-.-|.|+|..|+||+++|+++.+.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888877766643333355899999999999999998764
No 286
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.76 E-value=0.092 Score=52.30 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=43.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCcccc---ccchHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNV---YDGINIIGSR 293 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~---~~~~~~l~~~ 293 (1011)
++.|.|.+|+||||+|..++.+... ...++. .......+.++++....... ....... .++...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~ia-----t~~~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIA-----TAQPFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCc-----CCCCChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHhh
Confidence 5899999999999999999876432 234443 11233345555655443222 1111111 1223333332
Q ss_pred hcCCcEEEEEccC
Q 001805 294 LHHKKVLLLIDDV 306 (1011)
Q Consensus 294 L~~k~~LlVlDdv 306 (1011)
..+ .-++++|.+
T Consensus 74 ~~~-~~~VlID~L 85 (170)
T PRK05800 74 AAP-GRCVLVDCL 85 (170)
T ss_pred cCC-CCEEEehhH
Confidence 332 337888886
No 287
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.1 Score=53.17 Aligned_cols=51 Identities=29% Similarity=0.455 Sum_probs=38.4
Q ss_pred cccccchhHHHHHHHhh-----------cCCCCceEEEEEecCCchhHHHHHHHHHHhhccC
Q 001805 193 NLVGIDSHLKNLRLLMD-----------KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF 243 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1011)
+.=|.+-..+++.+... .+-+.+|-|.++|++|.|||.||+++++.-...|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 45577777777776654 1334567899999999999999999998655444
No 288
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.68 E-value=0.087 Score=56.86 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=27.9
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
.+.++++++|++|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999888765543334443
No 289
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.22 Score=50.74 Aligned_cols=147 Identities=20% Similarity=0.370 Sum_probs=82.5
Q ss_pred ccccc-cchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC
Q 001805 192 KNLVG-IDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG 259 (1011)
Q Consensus 192 ~~~vG-r~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 259 (1011)
-.+|| .+..+++|.+.+.. +-..++-|.++|++|.|||-||+++++.- ...|+. + +.
T Consensus 146 YeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-v---sg-- 214 (404)
T KOG0728|consen 146 YEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-V---SG-- 214 (404)
T ss_pred HHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-e---ch--
Confidence 34554 45666666665542 12235668899999999999999998742 344443 1 11
Q ss_pred ChHHHHHHHHHHHhCCCCCCccccccchHHHHhh----hcCCcEEEEEccCCCHH--------------H--HHHHhcCC
Q 001805 260 GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR----LHHKKVLLLIDDVVDIK--------------Q--LECLAGKR 319 (1011)
Q Consensus 260 ~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~----L~~k~~LlVlDdv~~~~--------------~--~~~l~~~~ 319 (1011)
.++.+..+ + ++..++++. -.+.+-+|..|.++... | .-.++..+
T Consensus 215 --selvqk~i----g----------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 215 --SELVQKYI----G----------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred --HHHHHHHh----h----------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc
Confidence 11111111 1 112222221 13567788888875432 1 22344444
Q ss_pred CCC--CCCceEEEEeCCchh-----hhccCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 320 EWF--GPGSRIIITSRDKHL-----LMTHGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 320 ~~~--~~gs~IIiTTR~~~~-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
+.| ...-+||..|..-++ +.....+..++.++-+++.-.+.+.-+.
T Consensus 279 dgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 279 DGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 433 245677777754433 2333456778888888888778776655
No 290
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.64 E-value=0.15 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999988887754
No 291
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.62 E-value=0.015 Score=57.59 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=7.9
Q ss_pred cCCCCCCcEEEcCC
Q 001805 671 LGKVESLEVLELSG 684 (1011)
Q Consensus 671 l~~l~~L~~L~l~~ 684 (1011)
+..+++|+.||..+
T Consensus 136 l~klp~l~~LDF~k 149 (233)
T KOG1644|consen 136 LYKLPSLRTLDFQK 149 (233)
T ss_pred EEecCcceEeehhh
Confidence 44555666666554
No 292
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.60 E-value=0.023 Score=62.25 Aligned_cols=50 Identities=28% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHHHHHHhh-cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMD-KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
...|..+|. .+-...+++-|+|++|+||||||.+++......-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 345556665 44456689999999999999999988876655555566764
No 293
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.60 E-value=0.032 Score=59.86 Aligned_cols=115 Identities=16% Similarity=0.148 Sum_probs=63.2
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCC-------ccccccc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNG-------IWNVYDG 286 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~-------~~~~~~~ 286 (1011)
+..-++|.|..|.|||||.+.++..+... .+.+++... .+. ..+...++........... ..+....
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~----~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVG----IVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-Eee----cchhHHHHHHHhcccccccccccccccccchHH
Confidence 45679999999999999999998766543 223333210 010 0000112221111111111 0111111
Q ss_pred hHHHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchh
Q 001805 287 INIIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHL 337 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~ 337 (1011)
..+..-.....+=++++|.+...+.+..+.... ..|..||+||.+..+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 122222223578899999998887777776554 257789999987655
No 294
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.59 E-value=0.23 Score=56.54 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=24.3
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999888766543
No 295
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.59 E-value=0.016 Score=56.15 Aligned_cols=36 Identities=31% Similarity=0.244 Sum_probs=29.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
..+|.|.|.+|+||||||+++.+++...-..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358999999999999999999999887766666654
No 296
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.55 E-value=0.034 Score=55.70 Aligned_cols=126 Identities=18% Similarity=0.222 Sum_probs=63.0
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCC---C-----ccccccc
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNN---G-----IWNVYDG 286 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---~-----~~~~~~~ 286 (1011)
..+++|.|..|.|||||.+.++.... ...+.+++.... ... .........+ .-+...... . ...-...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 35899999999999999999987543 334555543210 000 0000000000 000000000 0 0000111
Q ss_pred hHHHHhhhcCCcEEEEEccCCC------HHHHHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEc
Q 001805 287 INIIGSRLHHKKVLLLIDDVVD------IKQLECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKL 349 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv~~------~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l 349 (1011)
.-.+.+.+..++-++++|+-.. ...+..+...+ ..+..||++|.+...... .++++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~---~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRAL---AKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHh---cCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 2234455667788999998632 22233333333 235678888888776543 4555554
No 297
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.54 E-value=0.026 Score=61.81 Aligned_cols=50 Identities=26% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHHHhh-cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMD-KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
...|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|++
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 345666665 34455689999999999999999998876655555667765
No 298
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.54 E-value=0.045 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987554
No 299
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.053 Score=64.43 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=85.8
Q ss_pred ccccccchhHHHHHHHhhc-----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCC
Q 001805 192 KNLVGIDSHLKNLRLLMDK-----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGG 260 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1011)
....|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-.+..-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 4455666666555544431 223456899999999999999999999655544322111
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH-------------HHHHHhcCCCCCCC--C
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK-------------QLECLAGKREWFGP--G 325 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~--g 325 (1011)
.+++...+.. .......+....+..+..|.+|.++... .+..++...+.... +
T Consensus 311 ------~l~sk~vGes------ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 ------ELLSKWVGES------EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred ------HHhccccchH------HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 1111111100 0111222333335778999999985321 23333333322222 3
Q ss_pred ceEEEEeCCchhhh-----ccCcCcEEEcCCCCHHHHHHHHHHHhhc
Q 001805 326 SRIIITSRDKHLLM-----THGVDEVYKLRELHDDNALRLFCKKAFK 367 (1011)
Q Consensus 326 s~IIiTTR~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 367 (1011)
..||-||-...... ....+..+.++.-+.++..+.|..+.-.
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 33444554333322 1234678899999999999999888743
No 300
>PRK10867 signal recognition particle protein; Provisional
Probab=95.53 E-value=0.2 Score=57.37 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=24.4
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
...+|.++|.+|+||||+|..++..++.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999998888766554
No 301
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.52 E-value=0.015 Score=67.29 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=41.7
Q ss_pred cccccccchhHHHHHHHhh----cCCCCceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 191 LKNLVGIDSHLKNLRLLMD----KGSNDVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
..+++|.++.+++|.+.|. ......+++.++|++|+|||+||+.+++.+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468999999999998883 23345689999999999999999999885543
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.083 Score=59.66 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=23.4
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998887654
No 303
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.47 E-value=0.23 Score=55.27 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=37.2
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
..++|+...+.++.+.+..-.....-|.|+|..|+||+++|+++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4689999999988887764333334688999999999999998875
No 304
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.46 E-value=0.029 Score=54.38 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=57.6
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
..+++|.|..|.|||||++.+..... ...+.+++.....+.--.. ...-....-.+.+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~laral 85 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHHH
Confidence 36899999999999999999876432 2344454432100000000 000011122344455
Q ss_pred cCCcEEEEEccCC---CHHHHHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEc
Q 001805 295 HHKKVLLLIDDVV---DIKQLECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKL 349 (1011)
Q Consensus 295 ~~k~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l 349 (1011)
..++-++++|+.. +....+.+...+... +..||++|.+....... .++++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 6677789999863 222222222221111 24688888876554332 2344444
No 305
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.43 E-value=0.088 Score=58.09 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=25.3
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999998877644
No 306
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.42 E-value=0.013 Score=55.45 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=20.5
Q ss_pred EEEEecCCchhHHHHHHHHHHh
Q 001805 218 IGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
|+|.|.+|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 307
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.41 E-value=0.26 Score=58.08 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=37.6
Q ss_pred HHHhhhcCCcEEEEEccC------CCHHHHHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEcCC
Q 001805 289 IIGSRLHHKKVLLLIDDV------VDIKQLECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLRE 351 (1011)
Q Consensus 289 ~l~~~L~~k~~LlVlDdv------~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~~ 351 (1011)
.+...+-.++-+||||.- +..+.++..+..+ +| .||+.|.|+....... .+++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~G-tvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EG-TVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CC-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 344555678999999964 3444555555443 24 6888899998877654 55666664
No 308
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.37 E-value=0.11 Score=53.27 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
.+.+...+.. +-+++.|.|.+|.||||+++.+...+...
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3444555543 23688999999999999999988766554
No 309
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.36 E-value=0.01 Score=54.90 Aligned_cols=31 Identities=32% Similarity=0.494 Sum_probs=21.8
Q ss_pred EEEEecCCchhHHHHHHHHHHhhccCCceeE
Q 001805 218 IGICGMGGIGKTTLARVVYDLTSHKFEGSSF 248 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 248 (1011)
|.|+|.+|+||||+|++++..+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999988888865444
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.34 E-value=0.032 Score=55.52 Aligned_cols=127 Identities=19% Similarity=0.140 Sum_probs=61.5
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeee---hhhhhccCCh--HHHHHHHHHHHhCCCCCCccccccchHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLAN---VREISKEGGL--ISLQKQLLSQLLKLPNNGIWNVYDGINI 289 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~~~~~~~l--~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 289 (1011)
-.+++|.|..|.|||||++.++..... ..+.+++.. +.-+.+...+ ..+.+.+... .......-....-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHHH
Confidence 358999999999999999999864432 223333321 0001111111 1222222110 11111111122334
Q ss_pred HHhhhcCCcEEEEEccCCC---HHHHHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEcC
Q 001805 290 IGSRLHHKKVLLLIDDVVD---IKQLECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLR 350 (1011)
Q Consensus 290 l~~~L~~k~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~ 350 (1011)
+.+.+..++=++++|+-.. ....+.+...+... +..||++|.+..... ..++++.++
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l~ 161 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDLD 161 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEEc
Confidence 4555667778889997632 22222222221111 357888888776543 345565553
No 311
>PRK09354 recA recombinase A; Provisional
Probab=95.32 E-value=0.033 Score=61.47 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=37.6
Q ss_pred HHHHHHHhh-cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMD-KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
...|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 45 i~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 445666675 44455689999999999999999988876655556667765
No 312
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.32 E-value=0.056 Score=54.61 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=60.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChH------HHHHHHHHHHhCCCC---CCccccc-
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLI------SLQKQLLSQLLKLPN---NGIWNVY- 284 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~------~l~~~ll~~l~~~~~---~~~~~~~- 284 (1011)
..+++|.|..|.|||||++.++.... ...+.+++... ... ..... ....+++.. .+... .......
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~-~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGK-DLA-SLSPKELARKIAYVPQALEL-LGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHH-cCCHhHhcCCcccCCH
Confidence 35899999999999999999876432 34455555321 000 00000 111112322 22111 1111111
Q ss_pred --cchHHHHhhhcCCcEEEEEccCC---CHHHHHHHhcCCCCC-CC-CceEEEEeCCchhh
Q 001805 285 --DGINIIGSRLHHKKVLLLIDDVV---DIKQLECLAGKREWF-GP-GSRIIITSRDKHLL 338 (1011)
Q Consensus 285 --~~~~~l~~~L~~k~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IIiTTR~~~~~ 338 (1011)
...-.+.+.+...+-++++|+.. +.+..+.+...+... .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11233455566788899999863 222222222221111 22 67888888887654
No 313
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.31 E-value=0.15 Score=50.15 Aligned_cols=122 Identities=18% Similarity=0.266 Sum_probs=65.1
Q ss_pred HHHHHHhcceEEEEecCCcccCcchHHHHHHHHHHHhhCCCceEEEEEeeccCCccccccchHHHHHHHHHHHhhhcHHH
Q 001805 66 LFKAIEESKISIIVFSRNYACSTWCLDELVHILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFARHEEILAQNKEK 145 (1011)
Q Consensus 66 ~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~ 145 (1011)
+.++++++++.+.|+......+.. -.++.+.+... ..+ ..++.|+=++|-.. .+.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~-~~~-~p~ilVlNKiDl~~----------------------~~~ 56 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKE-KPH-KHLIFVLNKCDLVP----------------------TWV 56 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCcccc-CHHHHHHHHhc-cCC-CCEEEEEEchhcCC----------------------HHH
Confidence 567999999999998865432221 24555555432 223 56677775555411 012
Q ss_pred HHHHHHHHHHHhhhcCccccCcchhHHHHHHHhhcccCCCccccccccccccchhHHHHHHHhhcCC-CCceEEEEEecC
Q 001805 146 VQKWRDTLKEVANICGWELKDRNQSEFILEVVKVISSKSPIISGILKNLVGIDSHLKNLRLLMDKGS-NDVRMIGICGMG 224 (1011)
Q Consensus 146 ~~~w~~al~~~a~~~g~~~~~~~e~~~i~~iv~~~~~~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~-~~~~vv~I~G~g 224 (1011)
+..|...+.+..... . .+.....-.|.+.-++.+.+++.... .....|+++|++
T Consensus 57 ~~~~~~~~~~~~~~~--~-----------------------~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~ 111 (157)
T cd01858 57 TARWVKILSKEYPTI--A-----------------------FHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYP 111 (157)
T ss_pred HHHHHHHHhcCCcEE--E-----------------------EEeeccccccHHHHHHHHHHHHhhhccccceEEEEEeCC
Confidence 334444433211000 0 00000112345555555655543211 123568899999
Q ss_pred CchhHHHHHHHHH
Q 001805 225 GIGKTTLARVVYD 237 (1011)
Q Consensus 225 GiGKTtLA~~~~~ 237 (1011)
|+|||||...+..
T Consensus 112 nvGKStliN~l~~ 124 (157)
T cd01858 112 NVGKSSIINTLRS 124 (157)
T ss_pred CCChHHHHHHHhc
Confidence 9999999998864
No 314
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.34 Score=57.40 Aligned_cols=197 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred Ccccccc-ccccccchhHHHHHHHhhc----------CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehh
Q 001805 185 PIISGIL-KNLVGIDSHLKNLRLLMDK----------GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVR 253 (1011)
Q Consensus 185 ~~~~~~~-~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~ 253 (1011)
|+.|.+. .+.=|.+.-..+|.+-+.. +-....-|.++|++|.|||-||++|+...+-.| +. +
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lS-V- 736 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LS-V- 736 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Ee-e-
Confidence 3344433 3444666666666655432 222234688999999999999999988764333 22 1
Q ss_pred hhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH---------------HHHHHhcC
Q 001805 254 EISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK---------------QLECLAGK 318 (1011)
Q Consensus 254 ~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~---------------~~~~l~~~ 318 (1011)
+ +. +++....+.. .+...+.+.+.-..++++|.+|.++... .+-.++..
T Consensus 737 ----K-GP-----ELLNMYVGqS------E~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAE 800 (953)
T KOG0736|consen 737 ----K-GP-----ELLNMYVGQS------EENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAE 800 (953)
T ss_pred ----c-CH-----HHHHHHhcch------HHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHH
Confidence 1 11 1222212211 1122334444445789999999986532 12223333
Q ss_pred CCCC----CCCceEEEEeCCchhh-----hccCcCcEEEcCCCCHHHHHHH-HHHHh--hccCCCCccHHHHHHHHHHHh
Q 001805 319 REWF----GPGSRIIITSRDKHLL-----MTHGVDEVYKLRELHDDNALRL-FCKKA--FKTHQPKKGYEQLSEWVTKYS 386 (1011)
Q Consensus 319 ~~~~----~~gs~IIiTTR~~~~~-----~~~~~~~~~~l~~L~~~ea~~L-f~~~a--~~~~~~~~~~~~l~~~i~~~~ 386 (1011)
++.. ..+--||=.|-.++++ +-...++.+.|++=+.+|+..= +.... |+-+. .-+ ..+|+++|
T Consensus 801 LDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde-dVd----L~eiAk~c 875 (953)
T KOG0736|consen 801 LDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE-DVD----LVEIAKKC 875 (953)
T ss_pred hhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC-CcC----HHHHHhhC
Confidence 3222 2333455455444442 3334567777877666655432 22211 22211 112 23466666
Q ss_pred CCCchHHHHHHHHhcCCChHHHHHHHHH
Q 001805 387 GGLPLALKVLGSFLYGKTTKEWQSAVKR 414 (1011)
Q Consensus 387 ~GlPLal~~~~~~L~~~~~~~w~~~l~~ 414 (1011)
.-. .-|+-|+.--.+.|..++.+
T Consensus 876 p~~-----~TGADlYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 876 PPN-----MTGADLYSLCSDAMLAAIKR 898 (953)
T ss_pred CcC-----CchhHHHHHHHHHHHHHHHH
Confidence 532 23344444344556655544
No 315
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.27 E-value=0.062 Score=62.36 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=37.4
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 200 HLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 200 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
-+..+.++|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 345666777544445679999999999999999999887764434556654
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.24 E-value=0.018 Score=58.47 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=52.9
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHh-CCCCCCccccccchHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLL-KLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~-~~~~~~~~~~~~~~~~l~~~ 293 (1011)
...++|.|..|.||||+++++...+... ...+.+.+..+...... ... ++. ..............+.++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP------NWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC------CEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 3589999999999999999998766432 23333333222111000 000 000 00000011112345566677
Q ss_pred hcCCcEEEEEccCCCHHHHHHHh
Q 001805 294 LHHKKVLLLIDDVVDIKQLECLA 316 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~~~~~~l~ 316 (1011)
++..+=.++++.+.+.+.++.+.
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHH
Confidence 78888899999998887665443
No 317
>PRK04328 hypothetical protein; Provisional
Probab=95.24 E-value=0.065 Score=57.19 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
..|.++|..+-....++.|.|.+|.|||+||.+++.....+-+.++|+.
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3555666544445679999999999999999988765444445566654
No 318
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.23 E-value=0.017 Score=59.22 Aligned_cols=26 Identities=42% Similarity=0.707 Sum_probs=23.4
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
+|+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999987643
No 319
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.053 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
.|.|.|.+|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999873
No 320
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.23 E-value=0.057 Score=58.76 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=24.0
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3579999999999999999999876654
No 321
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.21 E-value=0.029 Score=64.16 Aligned_cols=46 Identities=22% Similarity=0.166 Sum_probs=38.3
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
+.++||++.++.+...+..+. -|.|.|++|+|||+||+++......
T Consensus 20 ~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 569999999999887775443 4889999999999999999886543
No 322
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.18 E-value=0.048 Score=63.85 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=46.7
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS 292 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 292 (1011)
+..++..++|++|+||||||..++++. .|.. +=+. .+.......+-+.|...+......+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa--GYsV-vEIN----ASDeRt~~~v~~kI~~avq~~s~l~------------- 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA--GYSV-VEIN----ASDERTAPMVKEKIENAVQNHSVLD------------- 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc--CceE-EEec----ccccccHHHHHHHHHHHHhhccccc-------------
Confidence 456899999999999999999998753 2321 1122 3444444445555544432211100
Q ss_pred hhcCCcEEEEEccCCCHH
Q 001805 293 RLHHKKVLLLIDDVVDIK 310 (1011)
Q Consensus 293 ~L~~k~~LlVlDdv~~~~ 310 (1011)
..+++.-||+|.++-..
T Consensus 384 -adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 -ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred -cCCCcceEEEecccCCc
Confidence 02688899999997543
No 323
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.18 E-value=0.064 Score=62.28 Aligned_cols=52 Identities=25% Similarity=0.212 Sum_probs=38.2
Q ss_pred hhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 199 SHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 199 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
.-+..+.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 78 TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 78 SGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3456677777654455679999999999999999999876655434556664
No 324
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.14 E-value=0.046 Score=59.34 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=71.9
Q ss_pred cccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHH
Q 001805 193 NLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQL 272 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 272 (1011)
.+.-.....+++.++|...-...+.|.|.|..|.||||+++++...+...-..++-+.+..+..-..
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~------------- 171 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG------------- 171 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC-------------
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc-------------
Confidence 3443444456666666543234578999999999999999999887655523334444332221000
Q ss_pred hCCCCCCc-cccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceE-EEEeCCc
Q 001805 273 LKLPNNGI-WNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRI-IITSRDK 335 (1011)
Q Consensus 273 ~~~~~~~~-~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~I-IiTTR~~ 335 (1011)
........ .+.....+.++..|+..+=.||++.+.+.+..+.+... ..|..+ +-|....
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 172 PNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp SSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred cceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 00000000 12344567788888988999999999988887764433 457777 5555443
No 325
>PRK15115 response regulator GlrR; Provisional
Probab=95.13 E-value=2 Score=50.27 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=33.7
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..++|....+.++.+....-......|.|.|.+|.|||++|+.+.+.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~ 180 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNA 180 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHh
Confidence 35788887777665554432223346789999999999999988764
No 326
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.09 E-value=0.097 Score=56.63 Aligned_cols=35 Identities=23% Similarity=0.579 Sum_probs=26.3
Q ss_pred cEEEEEccCCCH--HHHHHHhcCCCCCCCCceEEEEeCCc
Q 001805 298 KVLLLIDDVVDI--KQLECLAGKREWFGPGSRIIITSRDK 335 (1011)
Q Consensus 298 ~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~ 335 (1011)
+.+||+|.+.+. .++..+.... |.|+||+.|---.
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR~---G~GsKIVl~gd~a 388 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTRA---GEGSKIVLTGDPA 388 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHhc---cCCCEEEEcCCHH
Confidence 568999999764 4677776654 8999999987543
No 327
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.08 E-value=0.073 Score=53.68 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=25.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
..+++|.|..|.|||||++.++-.... ..+.+++
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~ 61 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITL 61 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEE
Confidence 358999999999999999999764332 3344444
No 328
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.08 E-value=1.1 Score=46.99 Aligned_cols=208 Identities=13% Similarity=0.184 Sum_probs=114.4
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc------cCCceeEeeehhh-----------
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH------KFEGSSFLANVRE----------- 254 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~----------- 254 (1011)
+.+.++++..+.+.++.. .++.+-..++|+.|.||-|.+..+.+.+-+ +-+...|......
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 446777777777777664 245677889999999999999888875422 2233333321110
Q ss_pred ------hhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcE-EEEEccCCCH--HHHHHHhcCCCCCCCC
Q 001805 255 ------ISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKV-LLLIDDVVDI--KQLECLAGKREWFGPG 325 (1011)
Q Consensus 255 ------~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~--~~~~~l~~~~~~~~~g 325 (1011)
......-..+.++++.++........ . ..+.+ ++|+-.++.. +.-.++..........
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~------------~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------Q-GQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------c-cccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 00111123344555555432221111 0 12233 4555555442 2233343333333567
Q ss_pred ceEEEEeCCch-hhhc-cCcCcEEEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCch-HHHHHHHH-hc
Q 001805 326 SRIIITSRDKH-LLMT-HGVDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPL-ALKVLGSF-LY 401 (1011)
Q Consensus 326 s~IIiTTR~~~-~~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPL-al~~~~~~-L~ 401 (1011)
+|+|+..-.-. +... ....-.+++...+++|....++..+-+..-.-+ .+++.+|+++++|+-- ||-.+-+. +.
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 78877443221 1111 112235799999999999999888755444333 6889999999999753 22222111 11
Q ss_pred C---------CChHHHHHHHHHHh
Q 001805 402 G---------KTTKEWQSAVKRLK 416 (1011)
Q Consensus 402 ~---------~~~~~w~~~l~~l~ 416 (1011)
+ -...+|+-.+.+..
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHH
Confidence 1 23467988887754
No 329
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.15 Score=57.05 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=27.2
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccC--CceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKF--EGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~ 249 (1011)
..+++++|+.|+||||++..++.+....+ ..+.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 47999999999999999999998765443 334444
No 330
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.07 E-value=0.012 Score=60.66 Aligned_cols=89 Identities=26% Similarity=0.242 Sum_probs=57.3
Q ss_pred CCCCCCCCeeecCCCCCC-CCCCCcccCCccCCcEEECCCCCCeec--CccccCCCCCCEEEEcCCcCccc------cCC
Q 001805 717 LSGLWSLRKLDLSDCDLG-EGAIPNDIGNLWSLEELYLSKNSFVTA--PASINRLFNLEELELEDCKRLQS------MPQ 787 (1011)
Q Consensus 717 l~~l~~L~~L~Ls~~~l~-~~~~p~~l~~l~~L~~L~L~~n~l~~l--p~~i~~l~~L~~L~L~~c~~L~~------lp~ 787 (1011)
+..+++|+.|.++.|... .+.++.....+|+|++|+|++|++..+ -..+..+.+|..|++.+|.-.+. +-.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 444567777777777321 233444455568888888888876632 12356778888899998876552 123
Q ss_pred CCCCccEEeecCCCcccc
Q 001805 788 LPPNIKEVGVNGCASLEK 805 (1011)
Q Consensus 788 lp~~L~~L~l~~c~~L~~ 805 (1011)
+.++|++|+-..+..-+.
T Consensus 141 ll~~L~~LD~~dv~~~Ea 158 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVDGEEA 158 (260)
T ss_pred HhhhhccccccccCCccc
Confidence 567888887766655444
No 331
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.18 Score=59.24 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=94.2
Q ss_pred cccccccchhHHHHHHHhh---cC-------CCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCC
Q 001805 191 LKNLVGIDSHLKNLRLLMD---KG-------SNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGG 260 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 260 (1011)
..+.-|.|+..+++.+..+ .. ..-++-|.++|++|.|||.||++++-...-.|-...- .
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSG---------S-- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG---------S-- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccc---------h--
Confidence 3567798887777666554 21 1225679999999999999999998755433321100 0
Q ss_pred hHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH----------------HHHHHhcCCCCCCC
Q 001805 261 LISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK----------------QLECLAGKREWFGP 324 (1011)
Q Consensus 261 l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~ 324 (1011)
++...+.+.+.. ...+...+..++-+++|++|.++... .+..++...+.++.
T Consensus 218 ------~FVemfVGvGAs------RVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 218 ------DFVEMFVGVGAS------RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred ------hhhhhhcCCCcH------HHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 001111111111 11233444455668899999774322 25666666665653
Q ss_pred --CceEEEEeCCchhh-----hccCcCcEEEcCCCCHHHHHHHHHHHhhccCCC-CccHHHHHHHHHHHhCCCc
Q 001805 325 --GSRIIITSRDKHLL-----MTHGVDEVYKLRELHDDNALRLFCKKAFKTHQP-KKGYEQLSEWVTKYSGGLP 390 (1011)
Q Consensus 325 --gs~IIiTTR~~~~~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~l~~~i~~~~~GlP 390 (1011)
|-.||..|-..+++ +....++.+.++..+-..-.+.+.-|+-..... .-++.. |++.+-|.-
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~----iAr~tpGfs 355 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKK----IARGTPGFS 355 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHH----HhhhCCCcc
Confidence 32333333333332 223456677777777677777777666332222 122222 566666543
No 332
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.01 E-value=0.17 Score=55.72 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=34.9
Q ss_pred cEEEcCCCCHHHHHHHHHHHhh----ccCCCCccHHHHHHHHHHHhCCCchHHHHHHHHh
Q 001805 345 EVYKLRELHDDNALRLFCKKAF----KTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFL 400 (1011)
Q Consensus 345 ~~~~l~~L~~~ea~~Lf~~~a~----~~~~~~~~~~~l~~~i~~~~~GlPLal~~~~~~L 400 (1011)
.+++|+..+.+|+.++...+.- ....+. ++.-+++.-..+|+|--++-++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 4688999999999988655442 112222 4455667777899996666665554
No 333
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.00 E-value=0.093 Score=56.16 Aligned_cols=48 Identities=25% Similarity=0.230 Sum_probs=37.0
Q ss_pred HHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 203 NLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 203 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
.|..+|..+-...+++=|+|+.|.||||+|.+++-.....-...+|++
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 344555544456789999999999999999988776666666788886
No 334
>PTZ00494 tuzin-like protein; Provisional
Probab=94.99 E-value=1.6 Score=48.90 Aligned_cols=160 Identities=12% Similarity=0.126 Sum_probs=90.3
Q ss_pred cccccccccccchhHHHHHHHhhc-CCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHH
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDK-GSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~ 265 (1011)
.+.....+|.|+.|-..+.+.|.+ +...+|++.+.|.-|.||++|.+....+ .--..+|++ ++. .++.+
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrk---E~~paV~VD-VRg------~EDtL 435 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRV---EGVALVHVD-VGG------TEDTL 435 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHH---cCCCeEEEE-ecC------CcchH
Confidence 345677899999999888888874 3346899999999999999999877553 222345554 221 12233
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHhh-------hcCCcEEEEE--ccCCCHHH----HHHHhcCCCCCCCCceEEEEe
Q 001805 266 KQLLSQLLKLPNNGIWNVYDGINIIGSR-------LHHKKVLLLI--DDVVDIKQ----LECLAGKREWFGPGSRIIITS 332 (1011)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~-------L~~k~~LlVl--Ddv~~~~~----~~~l~~~~~~~~~gs~IIiTT 332 (1011)
+.+.+. ++.+..+. -.+..+.+.+. ..++.=+||+ -+-.+... .-.|... ..-++|++--
T Consensus 436 rsVVKA-LgV~nve~--CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLacD----rRlCHvv~EV 508 (664)
T PTZ00494 436 RSVVRA-LGVSNVEV--CGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVSD----CQACHIVLAV 508 (664)
T ss_pred HHHHHH-hCCCChhh--hccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHcc----chhheeeeec
Confidence 344444 33333222 12233333322 3344445554 22223222 1122222 3456777654
Q ss_pred CCchhhhc---cCcCcEEEcCCCCHHHHHHHHHH
Q 001805 333 RDKHLLMT---HGVDEVYKLRELHDDNALRLFCK 363 (1011)
Q Consensus 333 R~~~~~~~---~~~~~~~~l~~L~~~ea~~Lf~~ 363 (1011)
--+.+-.. ...-..|-++.++.++|.++-.+
T Consensus 509 plESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH 542 (664)
T PTZ00494 509 PMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEH 542 (664)
T ss_pred hHhhhchhhccCccceeEecCCcCHHHHHHHHhc
Confidence 43332111 22345789999999999887544
No 335
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.94 E-value=0.1 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred ceEEEEEecCCchhHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVY 236 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~ 236 (1011)
..+++|.|+.|+|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3589999999999999999885
No 336
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.93 E-value=0.036 Score=58.49 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.0
Q ss_pred CCCceEEEEEecCCchhHHHHHHHHHHhhccC
Q 001805 212 SNDVRMIGICGMGGIGKTTLARVVYDLTSHKF 243 (1011)
Q Consensus 212 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1011)
.....+|+|.|+.|.|||||++.+...+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 35678999999999999999999998766543
No 337
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.059 Score=53.50 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=23.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCC
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFE 244 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 244 (1011)
+.|.+.|.+|+||||+|++++..++..-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 46889999999999999999987655433
No 338
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=0.026 Score=65.83 Aligned_cols=53 Identities=21% Similarity=0.409 Sum_probs=43.7
Q ss_pred ccccccchhHHHHHHHhh----cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCC
Q 001805 192 KNLVGIDSHLKNLRLLMD----KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFE 244 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 244 (1011)
.+-+|+++-.++|.+++. .++-...+++.+|++|+|||.+|+.++..+...|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 346799999999988886 23445689999999999999999999998877664
No 339
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.90 E-value=0.1 Score=50.86 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEecCCchhHHHHHHHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
+|.|.|.+|+||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 340
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.85 E-value=0.022 Score=47.20 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+|+|.|.+|+||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 341
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.85 E-value=0.19 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
+..|+|+||+|||+||..++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987654
No 342
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.81 E-value=0.36 Score=57.45 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=40.5
Q ss_pred cccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 191 LKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
...++|....++++.+.+..-.....-|.|+|..|+|||++|+++.+.-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4679999999999888877544444578999999999999999998753
No 343
>PRK03839 putative kinase; Provisional
Probab=94.79 E-value=0.022 Score=57.56 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 344
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.77 E-value=0.09 Score=56.50 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=20.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
+.|.|+|.||+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46899999999999999999887665
No 345
>PRK00625 shikimate kinase; Provisional
Probab=94.77 E-value=0.023 Score=56.77 Aligned_cols=24 Identities=29% Similarity=0.611 Sum_probs=21.5
Q ss_pred EEEEEecCCchhHHHHHHHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.|.|+||+|+||||+|+.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 346
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.75 E-value=0.041 Score=51.91 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 200 HLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 200 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
+.+++.+.|...-....+|.+.|.-|.||||+++.++..+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44455555543223345899999999999999999998653
No 347
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.74 E-value=0.027 Score=58.49 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=24.2
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 348
>PTZ00301 uridine kinase; Provisional
Probab=94.74 E-value=0.026 Score=58.18 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=24.7
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccC
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKF 243 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1011)
..+|||.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
No 349
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.74 E-value=0.73 Score=50.79 Aligned_cols=48 Identities=21% Similarity=0.066 Sum_probs=33.5
Q ss_pred EEEcCCCCHHHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHhCCCchHH
Q 001805 346 VYKLRELHDDNALRLFCKKAFKTHQPK-KGYEQLSEWVTKYSGGLPLAL 393 (1011)
Q Consensus 346 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~GlPLal 393 (1011)
+++|++++.+|+..++..++-.+-... ...+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774333222 233445566666679999644
No 350
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.72 E-value=0.022 Score=58.84 Aligned_cols=115 Identities=30% Similarity=0.227 Sum_probs=60.7
Q ss_pred CCCcEEeecCCCCCcccCcccccccccceeccccc--ccCCcCCcccCCCCCCcEEEcCCCCCCCCCCCCCCCCcccccc
Q 001805 627 SGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGC--SKLKNVPENLGKVESLEVLELSGCKGPPVSSSWYLPFPISLKR 704 (1011)
Q Consensus 627 ~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~l~~c--~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~ 704 (1011)
..|+.|.+.++. +.++- .+-.|++|++|.++.| .-...++--..++++|++|++++|.+..++++
T Consensus 43 ~~le~ls~~n~g-ltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl----------- 109 (260)
T KOG2739|consen 43 VELELLSVINVG-LTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL----------- 109 (260)
T ss_pred cchhhhhhhccc-eeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-----------
Confidence 344444454443 22221 1225667777777766 33344444455567777777777776443332
Q ss_pred cCCCCCcccCCCCCCCCCCCeeecCCCCCCCCCC--CcccCCccCCcEEECCCCCCeecCcc
Q 001805 705 SCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAI--PNDIGNLWSLEELYLSKNSFVTAPAS 764 (1011)
Q Consensus 705 ~~~~l~~~~l~~l~~l~~L~~L~Ls~~~l~~~~~--p~~l~~l~~L~~L~L~~n~l~~lp~~ 764 (1011)
..+..+.+|..|++.+|......- -..+.-+++|++|+=....-...|.+
T Consensus 110 ----------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~ 161 (260)
T KOG2739|consen 110 ----------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPEA 161 (260)
T ss_pred ----------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccccc
Confidence 223445567777777776433100 11244567777776555444445443
No 351
>PRK08233 hypothetical protein; Provisional
Probab=94.72 E-value=0.024 Score=57.38 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
..+|+|.|.+|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999988764
No 352
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.71 E-value=0.089 Score=56.28 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.4
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
+|.+.|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999877543
No 353
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.69 E-value=0.17 Score=56.25 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=27.8
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
..++++++|+.|+||||++..++.....+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999988876644433344443
No 354
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.68 E-value=0.071 Score=60.16 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=19.8
Q ss_pred eEEEEEecCCchhHHHHHHHHH
Q 001805 216 RMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
-.++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3799999999999999999864
No 355
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.68 E-value=0.0024 Score=75.78 Aligned_cols=65 Identities=29% Similarity=0.494 Sum_probs=43.4
Q ss_pred cCCCCCCcEEeecCCCCCccc--CcccccccccceecccccccCC--cCCcccCCCCCCcEEEcCCCCC
Q 001805 623 IELFSGLVLLNLRDCKNLLSL--PCTINGLKSLKKLYLSGCSKLK--NVPENLGKVESLEVLELSGCKG 687 (1011)
Q Consensus 623 i~~L~~L~~L~L~~c~~l~~l--p~~i~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~~ 687 (1011)
...+++|+.|+++.|..+... ......+++|++|.+.+|..+. .+-.....+++|++|++++|..
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 344578888999888754322 1111237799999988888642 2333455678899999998765
No 356
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=2.3 Score=46.44 Aligned_cols=166 Identities=11% Similarity=0.084 Sum_probs=89.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc---------CC-ceeEeeehhhhhccCChHHHHHHHHH
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK---------FE-GSSFLANVREISKEGGLISLQKQLLS 270 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~l~~l~~~ll~ 270 (1011)
++.+...+..+ .-.++..++|..|+||+++|+++++.+-.. .+ ...++. . ........++. ++..
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~--~g~~i~vd~Ir-~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-I--FDKDLSKSEFL-SAIN 79 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-c--CCCcCCHHHHH-HHHH
Confidence 34455555432 234778899999999999999999876111 11 111111 0 00111111111 2222
Q ss_pred HHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH--HHHHHhcCCCCCCCCceEEEEeCC-chhhhc-cCcCcE
Q 001805 271 QLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK--QLECLAGKREWFGPGSRIIITSRD-KHLLMT-HGVDEV 346 (1011)
Q Consensus 271 ~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~~~~~-~~~~~~ 346 (1011)
.+.-.+ .-.+.+=++|+||++... ....++..+..-++.+.+|++|.+ ..+... .....+
T Consensus 80 ~~~~~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~ 143 (299)
T PRK07132 80 KLYFSS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQV 143 (299)
T ss_pred HhccCC----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEE
Confidence 210000 001466678889987653 355555555544667777765544 344433 334568
Q ss_pred EEcCCCCHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhCCCchHHHH
Q 001805 347 YKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKV 395 (1011)
Q Consensus 347 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~GlPLal~~ 395 (1011)
+++.++++++..+.+.... .+ ++.++.++..++|.--|++.
T Consensus 144 ~~f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 144 FNVKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred EECCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999999988775531 11 23455566666763234444
No 357
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.65 E-value=0.16 Score=66.42 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
...+-|.++|++|.|||.||+++|....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 3456799999999999999999998643
No 358
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.64 E-value=0.058 Score=59.59 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=61.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccC-ChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEG-GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
...++|.|..|.||||+++++...+... ...+.+.+..+..... .... +...............+.+...
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHH
Confidence 4689999999999999999988765433 2344444333322111 0000 0000000011112335567777
Q ss_pred hcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCce-EEEEeCCch
Q 001805 294 LHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSR-IIITSRDKH 336 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~-IIiTTR~~~ 336 (1011)
|+..+=.||+|.+...+.++.+... ..|.. ++.|+....
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a~----~~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRAV----NTGHPGSITTLHAGS 254 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHHH----hcCCCeEEEEEeCCC
Confidence 8888999999999987766544333 23333 466665443
No 359
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.63 E-value=0.093 Score=58.91 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=64.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEe-eehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL-ANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
..|.|.|+.|.||||+.+++...+.......++. .+..+...... ..+ ....... .+.......++..|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~-----~~~----i~q~evg-~~~~~~~~~l~~~l 192 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNK-----RSL----INQREVG-LDTLSFANALRAAL 192 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCc-----cce----EEccccC-CCCcCHHHHHHHhh
Confidence 5899999999999999999988776554444443 22111110000 000 0000111 11223466778888
Q ss_pred cCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCchh
Q 001805 295 HHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHL 337 (1011)
Q Consensus 295 ~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~ 337 (1011)
+..+=.|++|.+.+.+......... ..|..|+.|......
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 8999999999999887766533332 345556666655443
No 360
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.036 Score=56.44 Aligned_cols=30 Identities=37% Similarity=0.527 Sum_probs=26.7
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
..+.+|||.|.+|+||||+|+.+++.+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 361
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.61 E-value=0.24 Score=57.51 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=24.3
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
...+|+|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999988765544
No 362
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.60 E-value=0.079 Score=58.88 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccC------CceeEee
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKF------EGSSFLA 250 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 250 (1011)
..+.++|..+-....++-|+|.+|+|||++|.+++....... ..++|+.
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 455566654445568899999999999999999886543221 3566765
No 363
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.59 E-value=0.24 Score=56.99 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=26.6
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh--ccCCceeEee
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS--HKFEGSSFLA 250 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 250 (1011)
.++++++|++|+||||++..++..+. ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999998887665 3333444443
No 364
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.077 Score=55.62 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=34.9
Q ss_pred hHHHHhhhcCCcEEEEEccC----CC--HHHHHHHhcCCCCCCCCceEEEEeCCchhhhc
Q 001805 287 INIIGSRLHHKKVLLLIDDV----VD--IKQLECLAGKREWFGPGSRIIITSRDKHLLMT 340 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv----~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~ 340 (1011)
...+.+.|.+++=|++||.- |. ...+-.++..+. ..|..||++|.|-.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 44667778899999999963 32 233444444443 348899999998865443
No 365
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.57 E-value=0.059 Score=54.04 Aligned_cols=114 Identities=17% Similarity=0.109 Sum_probs=58.5
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeeh--hhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANV--REISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS 292 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 292 (1011)
-.+++|.|..|.|||||++.++.... ...+.+.+... .-..+... ...-....-.+.+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~lar 84 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAA 84 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHH
Confidence 35899999999999999998876432 23344444311 00011000 0000111233445
Q ss_pred hhcCCcEEEEEccCC---CHHH---HHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEcC
Q 001805 293 RLHHKKVLLLIDDVV---DIKQ---LECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLR 350 (1011)
Q Consensus 293 ~L~~k~~LlVlDdv~---~~~~---~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~ 350 (1011)
.+..++-++++|+-. +... +..+...... ..+..||++|.+....... .+.++.+.
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 556677899999863 2222 2222222111 1235788888877654432 23444443
No 366
>PRK04040 adenylate kinase; Provisional
Probab=94.52 E-value=0.031 Score=56.77 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998874
No 367
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.51 E-value=0.069 Score=53.56 Aligned_cols=127 Identities=20% Similarity=0.191 Sum_probs=62.4
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCC--------ccccccc
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNG--------IWNVYDG 286 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~--------~~~~~~~ 286 (1011)
..+++|.|..|.|||||.+.++.... ...+.+.+... ... ..........+. -+....... ...-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhheE-EECCCCccccCcHHHHCcCHHHHH
Confidence 35899999999999999999986543 33444444321 000 001111111100 000000000 0000111
Q ss_pred hHHHHhhhcCCcEEEEEccCCC---H---HHHHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEc
Q 001805 287 INIIGSRLHHKKVLLLIDDVVD---I---KQLECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKL 349 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv~~---~---~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l 349 (1011)
.-.+.+.+..++=++++|+... . ..+..+..... ..|..||++|.+..... . .++++.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 2234445566777899998632 2 22333332221 23678888888876653 2 4556555
No 368
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.51 E-value=0.022 Score=51.97 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=21.2
Q ss_pred EEEEecCCchhHHHHHHHHHHhhcc
Q 001805 218 IGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
|-|+|.+|+|||++|+.++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5689999999999999988866543
No 369
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.51 E-value=0.031 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=23.2
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
...|.|+|++|+||||+|+++++++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999863
No 370
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.50 E-value=0.11 Score=54.57 Aligned_cols=124 Identities=20% Similarity=0.210 Sum_probs=66.8
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee-ehhhhhccCChHHHHHHHHHHHhCCCC-------CCccccccc
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA-NVREISKEGGLISLQKQLLSQLLKLPN-------NGIWNVYDG 286 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~l~~l~~~ll~~l~~~~~-------~~~~~~~~~ 286 (1011)
..++||+|..|.||||+|+.+..-.......+.|-. ++.... .....+...+++..+. ... .....-+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vg-l~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVG-LPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhC-CCHHHhhcCCcccCchhhh
Confidence 458999999999999999999875544443333321 011111 1122233344444421 111 111112223
Q ss_pred hHHHHhhhcCCcEEEEEccCCCH------HHHHHHhcCCCCCCCCceEEEEeCCchhhhcc
Q 001805 287 INIIGSRLHHKKVLLLIDDVVDI------KQLECLAGKREWFGPGSRIIITSRDKHLLMTH 341 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~ 341 (1011)
.-.+.+.+.-++-++|.|..... .|+-.++..+.. ..|-..+..|.|-.+...+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 34567778889999999986332 233333322211 2366677777777665543
No 371
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.095 Score=53.78 Aligned_cols=55 Identities=25% Similarity=0.413 Sum_probs=38.7
Q ss_pred cccccchhHHHHHHHhh-----------cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeeh
Q 001805 193 NLVGIDSHLKNLRLLMD-----------KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANV 252 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~ 252 (1011)
+.=|-.+++++|.+... .+-+.++-|.++|++|.|||-+|++++++- ..||+..+
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvi 243 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVI 243 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeeh
Confidence 34466677777766543 122345678999999999999999999864 35666533
No 372
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.49 E-value=0.11 Score=56.78 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=55.7
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhcc--CCceeEeeehhhhhccC-ChHHHHHHHHHHHhCCCCCCccccccchHHHHh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHK--FEGSSFLANVREISKEG-GLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS 292 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~-~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 292 (1011)
+.+.|.|..|+||||+++++.+.+... -..++-+.+..+..-.. ... + +... .......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~-~~~~----~~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------Q-LRTS----DDAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------E-EEec----CCCCCHHHHHHH
Confidence 467899999999999999999877553 23344444444432110 000 0 0000 011145677888
Q ss_pred hhcCCcEEEEEccCCCHHHHHHHh
Q 001805 293 RLHHKKVLLLIDDVVDIKQLECLA 316 (1011)
Q Consensus 293 ~L~~k~~LlVlDdv~~~~~~~~l~ 316 (1011)
.|+..+=.||+..+.+.+.++.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 888899999999999887766543
No 373
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.46 E-value=0.65 Score=53.15 Aligned_cols=41 Identities=17% Similarity=0.308 Sum_probs=32.4
Q ss_pred hhHHHHHHHhh-----cCCCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 199 SHLKNLRLLMD-----KGSNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 199 ~~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
..++++..||. ...-+.++..|.|++|+||||.++.++..+
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 45677777776 334456899999999999999999888754
No 374
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.46 Score=53.33 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEEEEecCCchhHHHHHHHHHHh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
|--.++|+||.|||++..|+++.+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 557799999999999999998854
No 375
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.44 E-value=0.046 Score=54.22 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=61.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRL 294 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 294 (1011)
..+++|.|..|.|||||.+.++... ....+.+++... .... .......+. .+.-... ...-....-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~-~~~~-~~~~~~~~~---~i~~~~q--LS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGK-EVSF-ASPRDARRA---GIAMVYQ--LSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCE-ECCc-CCHHHHHhc---CeEEEEe--cCHHHHHHHHHHHHH
Confidence 3589999999999999999987643 234455555321 0110 000010000 0000000 000111223344556
Q ss_pred cCCcEEEEEccCCC---HHHHHHHhcCCCCC-CCCceEEEEeCCchhhhccCcCcEEEc
Q 001805 295 HHKKVLLLIDDVVD---IKQLECLAGKREWF-GPGSRIIITSRDKHLLMTHGVDEVYKL 349 (1011)
Q Consensus 295 ~~k~~LlVlDdv~~---~~~~~~l~~~~~~~-~~gs~IIiTTR~~~~~~~~~~~~~~~l 349 (1011)
..++-++++|+... ....+.+...+... ..|..||++|.+...+... .++++.+
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 66788899998632 22222222211111 2467888898887644332 2344444
No 376
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.43 E-value=0.12 Score=50.79 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=36.2
Q ss_pred hHHHHhhhcCCcEEEEEcc----CCCHHHHHHH--hcCCCCCCCCceEEEEeCCchhhhccC
Q 001805 287 INIIGSRLHHKKVLLLIDD----VVDIKQLECL--AGKREWFGPGSRIIITSRDKHLLMTHG 342 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDd----v~~~~~~~~l--~~~~~~~~~gs~IIiTTR~~~~~~~~~ 342 (1011)
...|.+.+-+++-+|+-|. ++..-.|+-+ ...++ ..|..||++|.+.++...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 4456667778899999985 4444334332 23332 56999999999998876653
No 377
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=0.95 Score=49.99 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=22.8
Q ss_pred hhcCCCCceEEEEEecCCchhHHHHHHHHH
Q 001805 208 MDKGSNDVRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 208 L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
|+.+-+--..|+|+|+.|+||+||.+.+.-
T Consensus 606 ldFGiDmdSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 606 LDFGIDMDSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred ccccccccceeEEECCCCccHHHHHHHHhc
Confidence 333333345699999999999999998864
No 378
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.33 E-value=0.1 Score=48.56 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=53.2
Q ss_pred cEEEccccCcCccchHHHHHHHHHhCCCeEEecCCcCCCCCcchHHHHHHHHhcceEEEEecCC
Q 001805 20 DVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRN 83 (1011)
Q Consensus 20 dvfis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~ 83 (1011)
.|||-+. +| ..+++.+...|+..|+.+.+=.+....|..+.+.+.+++.+++.+||+++|.
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 4899995 77 5899999999998898876555566899999999999999999999999995
No 379
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.33 E-value=0.21 Score=50.02 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.9
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999998877655
No 380
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.32 E-value=0.27 Score=53.40 Aligned_cols=54 Identities=20% Similarity=0.140 Sum_probs=36.0
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhcc-CCceeEeeehhhhhccCChHHHHHHHHHHHh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHK-FEGSSFLANVREISKEGGLISLQKQLLSQLL 273 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 273 (1011)
...++.|.|.+|+||||+|.+++.....+ -..++|+. -.....++...+.+.+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS------~E~~~~~~~~r~~~~~~ 83 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS------LEEPVVRTARRLLGQYA 83 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE------cccCHHHHHHHHHHHHh
Confidence 44688999999999999999998776544 34455653 22334455555555433
No 381
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.32 E-value=0.041 Score=56.99 Aligned_cols=28 Identities=43% Similarity=0.601 Sum_probs=24.3
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
....+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999988654
No 382
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.31 E-value=0.11 Score=57.54 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.8
Q ss_pred EEEEecCCchhHHHHHHHHHHhh
Q 001805 218 IGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998775
No 383
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.29 E-value=0.07 Score=55.65 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=28.9
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
..++.+.+.....+..+|||.|+||+|||||..++...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444443334567899999999999999999988766543
No 384
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.27 E-value=0.072 Score=58.31 Aligned_cols=59 Identities=27% Similarity=0.285 Sum_probs=41.5
Q ss_pred ccccccccchhHHH---HHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeE
Q 001805 190 ILKNLVGIDSHLKN---LRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSF 248 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 248 (1011)
....+||.....+. +.++...+.-..+.|.+.|++|.|||+||.++++.+....+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 35689998877655 355555544346899999999999999999999999887775544
No 385
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=94.22 E-value=0.4 Score=46.19 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=32.9
Q ss_pred HHHHHHHHhcceEEEEecCCcccCcchHHHHHHHHHHHhhCCCceEEEEEeecc
Q 001805 64 PGLFKAIEESKISIIVFSRNYACSTWCLDELVHILECKNKNHQQMVYPIFYDVE 117 (1011)
Q Consensus 64 ~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~~~~~~~~v~pvf~~v~ 117 (1011)
.++.++|+++++.|+|++.....+.+. .++.+.+.... .+ ..++.|+=+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~-k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PR-KKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CC-CcEEEEEechh
Confidence 367899999999999998765545442 25555554332 23 56666664444
No 386
>PRK13947 shikimate kinase; Provisional
Probab=94.22 E-value=0.035 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
-|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 38899999999999999999887543
No 387
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.21 E-value=0.12 Score=63.94 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=37.9
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
..++|+...+..+.+.+..-.....-|.|+|..|+|||++|+++.+.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 579999999988877665333333568999999999999999997753
No 388
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.18 E-value=0.039 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.2
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+..+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 389
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.16 E-value=0.19 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.040 Sum_probs=21.3
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
.+|-|++-.|.||||.|..++-+...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~ 31 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALG 31 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHH
Confidence 57888888999999999888776543
No 390
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.13 E-value=0.1 Score=50.92 Aligned_cols=91 Identities=24% Similarity=0.150 Sum_probs=45.4
Q ss_pred EEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhcC--C
Q 001805 220 ICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHH--K 297 (1011)
Q Consensus 220 I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~--k 297 (1011)
|.|++|+||||+|+.++.++ .|.....-..+++...... .+..++...+.. ...-. .+-....+..++.. .
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~~s--~~g~~i~~~l~~-g~~vp--~~~v~~ll~~~l~~~~~ 73 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKSDS--ELGKQIQEYLDN-GELVP--DELVIELLKERLEQPPC 73 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHTTS--HHHHHHHHHHHT-TSS----HHHHHHHHHHHHHSGGT
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhhhh--HHHHHHHHHHHh-hccch--HHHHHHHHHHHHhhhcc
Confidence 68999999999999999875 2322222122222221111 112222222222 21111 12234455555542 2
Q ss_pred cEEEEEccC-CCHHHHHHHhc
Q 001805 298 KVLLLIDDV-VDIKQLECLAG 317 (1011)
Q Consensus 298 ~~LlVlDdv-~~~~~~~~l~~ 317 (1011)
..-+|||+. .+.+|.+.+..
T Consensus 74 ~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 74 NRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp TTEEEEESB-SSHHHHHHHHH
T ss_pred cceeeeeeccccHHHHHHHHH
Confidence 455789998 55666665543
No 391
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.11 E-value=0.06 Score=57.61 Aligned_cols=38 Identities=29% Similarity=0.277 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
...|.++|..+-....+.=|+|.+|+|||+||..++-.
T Consensus 24 ~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 24 CKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp SHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 34666777543334568899999999999999888754
No 392
>PRK06547 hypothetical protein; Provisional
Probab=94.09 E-value=0.05 Score=54.32 Aligned_cols=27 Identities=37% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHh
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
....+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998864
No 393
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.1 Score=56.78 Aligned_cols=75 Identities=19% Similarity=0.212 Sum_probs=50.9
Q ss_pred cchhHHHHHHHhhcccCCCccccccccccccchhHHHHHHHhh----------cCCCCceEEEEEecCCchhHHHHHHHH
Q 001805 167 RNQSEFILEVVKVISSKSPIISGILKNLVGIDSHLKNLRLLMD----------KGSNDVRMIGICGMGGIGKTTLARVVY 236 (1011)
Q Consensus 167 ~~e~~~i~~iv~~~~~~~~~~~~~~~~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~ 236 (1011)
.+++++++..-.+|..+++. ..=+++.|.....+-|++..- .....-+-|.++|++|.|||-||++||
T Consensus 189 ~~d~~Lve~lerdIl~~np~--ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 189 GYDADLVEALERDILQRNPN--IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred cchHHHHHHHHHHHhccCCC--cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHH
Confidence 46666776666666666332 223567788877776665442 112234679999999999999999999
Q ss_pred HHhhccC
Q 001805 237 DLTSHKF 243 (1011)
Q Consensus 237 ~~~~~~f 243 (1011)
......|
T Consensus 267 TEc~tTF 273 (491)
T KOG0738|consen 267 TECGTTF 273 (491)
T ss_pred HhhcCeE
Confidence 9876433
No 394
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.02 E-value=0.066 Score=53.84 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.0
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
..+|+|.|++|+||||+|++++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987754
No 395
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.5 Score=49.65 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=36.9
Q ss_pred ccccccchhHHHHHHHhh---------c-CCCCceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 192 KNLVGIDSHLKNLRLLMD---------K-GSNDVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~---------~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.+.-|.+...+.|.+..- . .....+-|.++|++|.||+-||++|+....
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 456788888888876543 1 122357899999999999999999987543
No 396
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.15 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..+++|.|..|.|||||++.++..
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998853
No 397
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.97 E-value=0.046 Score=54.93 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988754
No 398
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.95 E-value=0.11 Score=55.87 Aligned_cols=58 Identities=26% Similarity=0.197 Sum_probs=44.6
Q ss_pred cccccccccchhHHH---HHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCce
Q 001805 189 GILKNLVGIDSHLKN---LRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGS 246 (1011)
Q Consensus 189 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 246 (1011)
.....|||.....+. +.++...+.-..+.|.|+|++|.|||+||..+++.+...-+.+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 345789998766554 5666665544568999999999999999999999988765543
No 399
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.91 E-value=0.12 Score=54.48 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
..+++|.|+.|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999976
No 400
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.89 E-value=0.21 Score=50.53 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhcc---CC-ce-eEeeehhhhhcc-CChHHHHHHHHHHHhCCCCCCccc-cccchH
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHK---FE-GS-SFLANVREISKE-GGLISLQKQLLSQLLKLPNNGIWN-VYDGIN 288 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~---f~-~~-~~~~~~~~~~~~-~~l~~l~~~ll~~l~~~~~~~~~~-~~~~~~ 288 (1011)
.-..|.|++|+|||||.+.+++-++.. |. .. +.++.-.+.... .+..+. ++...+ +..+ ......
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R~------dVld~cpk~~g 209 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRRM------DVLDPCPKAEG 209 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhhh------hhcccchHHHH
Confidence 347789999999999999998866544 32 22 333222221110 111111 111110 0001 111122
Q ss_pred HHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCC
Q 001805 289 IIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRD 334 (1011)
Q Consensus 289 ~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~ 334 (1011)
++...-...+=++|+|.+-..++..++.... ..|.++|.|..-
T Consensus 210 mmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 210 MMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 2222223457799999998888766666554 568888877653
No 401
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.88 E-value=0.14 Score=51.46 Aligned_cols=27 Identities=19% Similarity=0.007 Sum_probs=22.5
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
...|-|+|..|-||||.|...+-+...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g 48 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVG 48 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHH
Confidence 468999999999999999888776543
No 402
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.86 E-value=0.0027 Score=65.43 Aligned_cols=80 Identities=25% Similarity=0.247 Sum_probs=44.8
Q ss_pred ccCcchhhhcccCCccccccCcccCCCCCCcEEeecCCCCCcccCc--ccccccccceecccccccCCcCCcc-----cC
Q 001805 600 MTNMEHVLELHLEGTAIRGLPISIELFSGLVLLNLRDCKNLLSLPC--TINGLKSLKKLYLSGCSKLKNVPEN-----LG 672 (1011)
Q Consensus 600 ~~~l~~L~~L~L~~~~i~~lp~si~~L~~L~~L~L~~c~~l~~lp~--~i~~l~~L~~L~l~~c~~l~~lp~~-----l~ 672 (1011)
...|+.|++|.|+-|+|+.|.+ +..+++|+.|.|+.|. +.++.. -+.++++|++|.|..|.-.+.-+.. +.
T Consensus 37 c~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 3456666666666666666554 5566666666666653 233221 2446667777777665544433322 34
Q ss_pred CCCCCcEEE
Q 001805 673 KVESLEVLE 681 (1011)
Q Consensus 673 ~l~~L~~L~ 681 (1011)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 456666665
No 403
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.85 E-value=0.66 Score=57.10 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=35.5
Q ss_pred cccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH
Q 001805 191 LKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 191 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
.+.++|....+.++.+....-.....-|.|+|..|+||+++|+++.+.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHh
Confidence 356788888777776666532223334889999999999999998764
No 404
>PHA02244 ATPase-like protein
Probab=93.79 E-value=0.25 Score=54.73 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=34.4
Q ss_pred ccccccccccchhHHHH----HHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 188 SGILKNLVGIDSHLKNL----RLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l----~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
......++|........ .+++..+ .-|.|+|++|+|||+||+++++....
T Consensus 92 ~~~d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 92 SGIDTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred hhCCCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34455678877666443 3344322 24788999999999999999987543
No 405
>PRK08356 hypothetical protein; Provisional
Probab=93.78 E-value=0.14 Score=52.48 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.2
Q ss_pred eEEEEEecCCchhHHHHHHHH
Q 001805 216 RMIGICGMGGIGKTTLARVVY 236 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~ 236 (1011)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999983
No 406
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.77 E-value=0.12 Score=51.92 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=25.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
..+++|.|..|.|||||++.++.... ...+.+++
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~ 59 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKV 59 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEE
Confidence 35899999999999999999876432 23444444
No 407
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.74 E-value=0.42 Score=60.36 Aligned_cols=195 Identities=18% Similarity=0.132 Sum_probs=94.6
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccC----CceeEee--ehhhhhccCChH-HHHHHHHHHHhCCCCCCccccccchH
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKF----EGSSFLA--NVREISKEGGLI-SLQKQLLSQLLKLPNNGIWNVYDGIN 288 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~--~~~~~~~~~~l~-~l~~~ll~~l~~~~~~~~~~~~~~~~ 288 (1011)
.-+.|+|.+|.||||+...++-....+. +..+++. ...... +..-. .+..-+... ..... .......
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~-~~~~q~~~~~~l~~~-~~~~~----~~~~~~~ 296 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALAR-KFEKQLSLIDYLAEE-LFSQG----IAKQLIE 296 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhh-hhHhhccHHHHHHHH-HhccC----CcchhhH
Confidence 3688999999999999988876443322 2222322 111111 10000 122222222 11111 1112223
Q ss_pred HHHhhhcCCcEEEEEccCCCHHH------HHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEcCCCCHHHHHHHHH
Q 001805 289 IIGSRLHHKKVLLLIDDVVDIKQ------LECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLRELHDDNALRLFC 362 (1011)
Q Consensus 289 ~l~~~L~~k~~LlVlDdv~~~~~------~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 362 (1011)
...+.+...++++.+|.++.... +..+-...++ -+.+.+|+|+|....-.........++..+.++.-.....
T Consensus 297 ~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~ 375 (824)
T COG5635 297 AHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL 375 (824)
T ss_pred HHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence 33577889999999999876542 2222222222 2478999999977543332223445555555554432222
Q ss_pred --------HHhhccCCCC--ccHHHH---HHHHHHHhCCCchHHHHHHHHhc------CCChHHHHHHHHHHhc
Q 001805 363 --------KKAFKTHQPK--KGYEQL---SEWVTKYSGGLPLALKVLGSFLY------GKTTKEWQSAVKRLKR 417 (1011)
Q Consensus 363 --------~~a~~~~~~~--~~~~~l---~~~i~~~~~GlPLal~~~~~~L~------~~~~~~w~~~l~~l~~ 417 (1011)
...++..... .....+ ..+-++.....|++|...+.... ....+-++.+++.+-.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 376 YQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 1112211111 001111 11223444778988888774432 1344556666665543
No 408
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.25 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..+++|.|..|.|||||++.++..
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999763
No 409
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.73 E-value=0.16 Score=54.81 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 204 LRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
+.++|..+-+..+++.|.|.+|+|||++|.++..+.......++|+.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34445444456789999999999999999999998887888888875
No 410
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.72 E-value=0.0055 Score=62.94 Aligned_cols=60 Identities=23% Similarity=0.310 Sum_probs=37.7
Q ss_pred CCCCeeecCCCCCCCCCCC----cccCCccCCcEEECCCCCCeec-----CccccCCCCCCEEEEcCCc
Q 001805 721 WSLRKLDLSDCDLGEGAIP----NDIGNLWSLEELYLSKNSFVTA-----PASINRLFNLEELELEDCK 780 (1011)
Q Consensus 721 ~~L~~L~Ls~~~l~~~~~p----~~l~~l~~L~~L~L~~n~l~~l-----p~~i~~l~~L~~L~L~~c~ 780 (1011)
..|+.+.+..|.+....+. ..+..+.+|+.|+|..|.|+.. ...+...+.|+.|.+.+|-
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 4677788887776432111 1234567888888888877632 2233444668888888885
No 411
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.72 E-value=0.27 Score=58.48 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=36.1
Q ss_pred ccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHH
Q 001805 190 ILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 190 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
....++|....+.++.+.+..-...-.-|.|+|..|.||+++|+++..
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 346799999988888766652222223488999999999999999754
No 412
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.71 E-value=0.052 Score=54.58 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=23.4
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999988765
No 413
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.70 E-value=0.026 Score=34.94 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=12.5
Q ss_pred CCcEEECCCCCCeecCccccC
Q 001805 747 SLEELYLSKNSFVTAPASINR 767 (1011)
Q Consensus 747 ~L~~L~L~~n~l~~lp~~i~~ 767 (1011)
+|++|+|++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 414
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.70 E-value=0.49 Score=46.60 Aligned_cols=62 Identities=27% Similarity=0.420 Sum_probs=36.8
Q ss_pred hHHHHhhhcCCcEEEEEccCCC----HHHHHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEcC
Q 001805 287 INIIGSRLHHKKVLLLIDDVVD----IKQLECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLR 350 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv~~----~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~ 350 (1011)
...+.++.. .+=+-|||.-+. ..|++-+....+....|+.|||.|.++-++. +....+|++.
T Consensus 137 ~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA-iP~A~I~~~~ 202 (233)
T COG3910 137 LAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA-IPGAEIYEIS 202 (233)
T ss_pred HHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-CCCcEEEEEe
Confidence 344444443 455788998654 3455544433222356899999999885543 4445566654
No 415
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.68 E-value=0.089 Score=54.06 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=28.6
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
....+|+|+|++|+||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3457999999999999999999998775443334554
No 416
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.66 E-value=0.094 Score=57.50 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=28.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
.+++.+.|.||+||||+|.+.+-...........+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999999887776666544444
No 417
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.65 E-value=0.52 Score=54.70 Aligned_cols=74 Identities=27% Similarity=0.260 Sum_probs=47.8
Q ss_pred ccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhh-ccCCceeEeeehhhhhccCChHHHHHHHHHHH
Q 001805 194 LVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTS-HKFEGSSFLANVREISKEGGLISLQKQLLSQL 272 (1011)
Q Consensus 194 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 272 (1011)
..|...-...|.+++. +-....++.|-|.+|+|||++|..++.... .+-..++|+ +-.....++...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~f------SlEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFF------SLEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEE------ECCCCHHHHHHHHHHHH
Confidence 4455555666666654 334456899999999999999999987654 222334454 33445666777776654
Q ss_pred hC
Q 001805 273 LK 274 (1011)
Q Consensus 273 ~~ 274 (1011)
.+
T Consensus 247 ~~ 248 (421)
T TIGR03600 247 SG 248 (421)
T ss_pred cC
Confidence 43
No 418
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=93.64 E-value=0.82 Score=54.06 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=37.5
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHH
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..++|....+.++.+.+..-......|.|.|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 46899999888887777643344456889999999999999998764
No 419
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.64 E-value=0.07 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.554 Sum_probs=22.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
+|+|.|.+|+||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 420
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.63 E-value=0.045 Score=55.48 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.8
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998865
No 421
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.61 E-value=0.38 Score=54.42 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.0
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 422
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.60 E-value=0.13 Score=57.73 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=55.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCc---eeEeeehhhhhccCChHHHHH--HHHHHHhCCCCCCccccccchHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEG---SSFLANVREISKEGGLISLQK--QLLSQLLKLPNNGIWNVYDGINI 289 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~l~~l~~--~ll~~l~~~~~~~~~~~~~~~~~ 289 (1011)
...|.|+|+.|.||||+++++.+.+....+. ++.+.+..+.. ...... ....+ .. ...+.......
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~----~~~~~~~~~~v~Q----~~-v~~~~~~~~~~ 204 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV----YDEIETISASVCQ----SE-IPRHLNNFAAG 204 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe----ccccccccceeee----ee-ccccccCHHHH
Confidence 3689999999999999999998877544332 22222221110 000000 00000 00 01112234567
Q ss_pred HHhhhcCCcEEEEEccCCCHHHHHHHhc
Q 001805 290 IGSRLHHKKVLLLIDDVVDIKQLECLAG 317 (1011)
Q Consensus 290 l~~~L~~k~~LlVlDdv~~~~~~~~l~~ 317 (1011)
++..|+..+-.+++..+.+.+..+....
T Consensus 205 l~~aLR~~Pd~i~vGEiRd~et~~~al~ 232 (358)
T TIGR02524 205 VRNALRRKPHAILVGEARDAETISAALE 232 (358)
T ss_pred HHHHhccCCCEEeeeeeCCHHHHHHHHH
Confidence 7888899999999999998887764443
No 423
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.59 E-value=0.11 Score=55.94 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=29.6
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
....++.|.|.+|+|||++|.+++.....+=+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44578999999999999999998775544445667765
No 424
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.57 E-value=0.085 Score=59.25 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=37.7
Q ss_pred ccccccchhHHHHHHHhhcC------------CCCceEEEEEecCCchhHHHHHHHHHHhhccC
Q 001805 192 KNLVGIDSHLKNLRLLMDKG------------SNDVRMIGICGMGGIGKTTLARVVYDLTSHKF 243 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1011)
+.+||.+...+.+.-.+... ....+-|.++|++|+|||++|++++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46788888777775444321 11246789999999999999999998775443
No 425
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.55 E-value=0.096 Score=50.92 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=28.2
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhccCCceeE
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSF 248 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 248 (1011)
...+|.+.|.+|.||||||.+++.++...--....
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45789999999999999999999987665443333
No 426
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.55 E-value=0.18 Score=61.46 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.5
Q ss_pred ceEEEEEecCCchhHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
...++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998865
No 427
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.54 E-value=0.19 Score=61.45 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.0
Q ss_pred eEEEEEecCCchhHHHHHHHHH
Q 001805 216 RMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
..|+|+|..|+||||||+.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998864
No 428
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.52 E-value=0.1 Score=53.77 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.4
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..+++|.|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 429
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.48 E-value=0.16 Score=61.87 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=25.0
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
...++|+|..|.|||||++.+...+ . ..+.+.+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~G~I~i 408 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL-P-YQGSLKI 408 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC-C-CCcEEEE
Confidence 3679999999999999999987654 2 3444443
No 430
>PRK13949 shikimate kinase; Provisional
Probab=93.44 E-value=0.058 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
-|.|+|++|+||||+|+.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 431
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.40 E-value=0.22 Score=55.27 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=34.3
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc------CCceeEee
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK------FEGSSFLA 250 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 250 (1011)
..+.++|..+-....++-|+|.+|+|||++|.+++...... -..++|+.
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 44556665444456889999999999999999987654321 12566765
No 432
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.40 E-value=0.23 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=19.0
Q ss_pred EEEEEecCCchhHHHHHHHH
Q 001805 217 MIGICGMGGIGKTTLARVVY 236 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~ 236 (1011)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 433
>PRK13948 shikimate kinase; Provisional
Probab=93.38 E-value=0.067 Score=53.84 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.9
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
..+.|.++|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999998764
No 434
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.37 E-value=0.063 Score=51.30 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
+|.|.|++|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6899999999999999999987643
No 435
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.36 E-value=0.063 Score=52.55 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=20.4
Q ss_pred EEEEecCCchhHHHHHHHHHHh
Q 001805 218 IGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 436
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.34 E-value=0.36 Score=49.49 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHHH
Q 001805 217 MIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
+++|+|..|+|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 437
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.34 E-value=0.059 Score=53.72 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=27.6
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh-ccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS-HKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~ 249 (1011)
...+.+.|+.|+|||.||+++++.+. ......+-+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~ 38 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI 38 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH
Confidence 35788999999999999999999877 455444444
No 438
>PRK06217 hypothetical protein; Validated
Probab=93.32 E-value=0.058 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHhh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.|.|.|.+|+||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998763
No 439
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.29 E-value=0.06 Score=52.16 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+|.|.|.+|+||||+|+.++.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998875
No 440
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.28 E-value=0.29 Score=53.00 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=25.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 249 (1011)
..+++|+|..|.|||||.+.++.... ..+.+++
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i 62 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQI 62 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEE
Confidence 35899999999999999999986543 2344444
No 441
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.27 E-value=0.27 Score=58.01 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=39.5
Q ss_pred hHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 200 HLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 200 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
-+..|.++|..+-..-.++.|.|.+|+||||||.+++.....+=+.++|+.
T Consensus 248 Gi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 248 GVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred ChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356777778665556689999999999999999999887665555666653
No 442
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.27 E-value=0.56 Score=49.85 Aligned_cols=55 Identities=24% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCCCceEEEEEecCCchhHHHHHHHHHHhhcc-CCceeEeeehhhhhccCChHHHHHHHHHH
Q 001805 211 GSNDVRMIGICGMGGIGKTTLARVVYDLTSHK-FEGSSFLANVREISKEGGLISLQKQLLSQ 271 (1011)
Q Consensus 211 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~l~~l~~~ll~~ 271 (1011)
+-....++.|.|.+|+|||++|.+++.....+ =..++|+. -......+...++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E~~~~~~~~r~~~~ 64 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LEMSKEQLLQRLLAS 64 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CCCCHHHHHHHHHHH
Confidence 33445789999999999999999988765544 33445543 334455566665544
No 443
>PRK05439 pantothenate kinase; Provisional
Probab=93.27 E-value=0.11 Score=56.78 Aligned_cols=29 Identities=38% Similarity=0.492 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
....+|||.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999998886643
No 444
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.27 E-value=0.055 Score=54.60 Aligned_cols=23 Identities=39% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+|+|.|.+|+||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 445
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.26 E-value=0.14 Score=54.98 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeE
Q 001805 204 LRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSF 248 (1011)
Q Consensus 204 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 248 (1011)
.++++.. .++.+|.|.|.+|+|||||+..+...+.......+.
T Consensus 95 ~r~~~~~--~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 95 NRARFAA--RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred HHHHHHh--cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 4444432 467899999999999999999999988776544444
No 446
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.24 E-value=0.1 Score=55.18 Aligned_cols=41 Identities=24% Similarity=0.384 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
.++...+....++..+|||.|.||+|||||..++...+..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 34545555455677899999999999999999888766443
No 447
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.22 E-value=0.32 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEecCCchhHHHHHHHHHHh
Q 001805 218 IGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 448
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.21 E-value=0.058 Score=56.31 Aligned_cols=25 Identities=48% Similarity=0.686 Sum_probs=22.3
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
+|||.|..|+||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 449
>PRK13946 shikimate kinase; Provisional
Probab=93.16 E-value=0.068 Score=54.20 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.+.|.+.|++|+||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998873
No 450
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.14 E-value=0.15 Score=50.14 Aligned_cols=122 Identities=24% Similarity=0.291 Sum_probs=61.8
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLH 295 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 295 (1011)
.+++|.|..|.|||||++.+...+. ...+.+++... .... ....... ..+.-... ...-....-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~~-~~~~~~~----~~i~~~~q--lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIAK-LPLEELR----RRIGYVPQ--LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Eccc-CCHHHHH----hceEEEee--CCHHHHHHHHHHHHHh
Confidence 6899999999999999999976543 34455555421 0000 0001110 00000000 0000111233445556
Q ss_pred CCcEEEEEccCCC---HHH---HHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEc
Q 001805 296 HKKVLLLIDDVVD---IKQ---LECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKL 349 (1011)
Q Consensus 296 ~k~~LlVlDdv~~---~~~---~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l 349 (1011)
..+-++++|+... ... +..+..... ..+..+|++|.+....... .++++.+
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 6778999998742 222 222222221 2256788888887665542 2445544
No 451
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.13 E-value=0.12 Score=57.80 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=41.9
Q ss_pred ccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
+.++|.+..+..+...+..+ +-+.+.|.+|+|||+||+.++..+...|-.+.+..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~ 78 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTP 78 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCC
Confidence 44889888887776555443 35889999999999999999998876665555543
No 452
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.10 E-value=0.26 Score=57.78 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=67.2
Q ss_pred cccchh-HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHh
Q 001805 195 VGIDSH-LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLL 273 (1011)
Q Consensus 195 vGr~~~-l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 273 (1011)
.|...+ ++.+..++.. ...+|.|.|+.|.||||+..++.+.+...-..++-+.+-.+..- .+. .+.
T Consensus 224 Lg~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~-~~~--------~q~- 290 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI-EGI--------GQI- 290 (486)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec-CCC--------ceE-
Confidence 344433 4455555532 23589999999999999999887766433223333332211110 010 000
Q ss_pred CCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCCc
Q 001805 274 KLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDK 335 (1011)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 335 (1011)
. .....-......++..|+..+=.|++..+.+.+..+...... ..|-.|+-|-...
T Consensus 291 ~---v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~aa---~tGHlvlsTlHa~ 346 (486)
T TIGR02533 291 Q---VNPKIGLTFAAGLRAILRQDPDIIMVGEIRDLETAQIAIQAS---LTGHLVLSTLHTN 346 (486)
T ss_pred E---EccccCccHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHHH---HhCCcEEEEECCC
Confidence 0 000000134567888899999999999999988655443331 2344444444433
No 453
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.07 E-value=0.37 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.8
Q ss_pred ceEEEEEecCCchhHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
..+++|.|..|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 454
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.07 E-value=0.26 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..+++|.|..|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998753
No 455
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.06 E-value=0.064 Score=55.17 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.0
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 456
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.05 E-value=0.064 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998763
No 457
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.2 Score=51.00 Aligned_cols=60 Identities=20% Similarity=0.129 Sum_probs=36.3
Q ss_pred hHHHHhhhcCCcEEEEEccCCCHHH---HHHH---hcCCCCCCCCceEEEEeCCchhhhccCcCcEEE
Q 001805 287 INIIGSRLHHKKVLLLIDDVVDIKQ---LECL---AGKREWFGPGSRIIITSRDKHLLMTHGVDEVYK 348 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv~~~~~---~~~l---~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~ 348 (1011)
...+.+.+--++-+.|||..++--+ ++.+ ...+. .+|+-++|.|..+.++.....+.++-
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 4455666666788999998765322 2222 22222 45777777777777777665555543
No 458
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.02 E-value=0.13 Score=57.95 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=38.1
Q ss_pred ccccccchhHHHHHHHhhc---------CC---CCceEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 192 KNLVGIDSHLKNLRLLMDK---------GS---NDVRMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 192 ~~~vGr~~~l~~l~~~L~~---------~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
..++|.+..++.+...+.. +. ...+-|.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 5688888888887766632 00 113678999999999999999999876543
No 459
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.00 E-value=0.097 Score=51.99 Aligned_cols=24 Identities=42% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEecCCchhHHHHHHHHHHhhc
Q 001805 218 IGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 218 v~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988754
No 460
>PRK14528 adenylate kinase; Provisional
Probab=92.98 E-value=0.4 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.1
Q ss_pred eEEEEEecCCchhHHHHHHHHHHh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 461
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.97 E-value=0.32 Score=50.26 Aligned_cols=61 Identities=23% Similarity=0.258 Sum_probs=38.7
Q ss_pred hHHHHhhhcCCcEEEEEccC----C--CHHHHHHHhcCCCCCCCCceEEEEeCCchhhhccCcCcEEEcC
Q 001805 287 INIIGSRLHHKKVLLLIDDV----V--DIKQLECLAGKREWFGPGSRIIITSRDKHLLMTHGVDEVYKLR 350 (1011)
Q Consensus 287 ~~~l~~~L~~k~~LlVlDdv----~--~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~~~~~l~ 350 (1011)
.-.+.+.+-..+-+|+-|+- + +.+.+-.++.... ...|..||+.|.+..++.. .++++.+.
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 44677778888999999964 2 2233333333321 1347789999999988874 34555553
No 462
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.96 E-value=0.19 Score=56.60 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=61.4
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhccCC--ceeEeeehhhhhccCChHHHHHHHHHHHhCCCCCCccccccchHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHKFE--GSSFLANVREISKEGGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGSR 293 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 293 (1011)
..|.|.|+.|+||||+++++.+.+....+ .++-+.+..+..-. +...+.. ..+ .. ...+.......++..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~~~~~~--~~q----~e-vg~~~~~~~~~l~~a 221 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SPDDLLP--PAQ----SQ-IGRDVDSFANGIRLA 221 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CCceeec--ccc----cc-cCCCccCHHHHHHHh
Confidence 47889999999999999999887654332 23333322221100 0000000 000 00 011222345678888
Q ss_pred hcCCcEEEEEccCCCHHHHHHHhcCCCCCCCCceEEEEeCC
Q 001805 294 LHHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRD 334 (1011)
Q Consensus 294 L~~k~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~ 334 (1011)
|+..+=.|+++.+.+.+.++...... ..|..++-|-..
T Consensus 222 LR~~PD~I~vGEiRd~et~~~al~aa---~TGH~v~tTlHa 259 (372)
T TIGR02525 222 LRRAPKIIGVGEIRDLETFQAAVLAG---QSGHFCLGTLHV 259 (372)
T ss_pred hccCCCEEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeCC
Confidence 99999999999999998877544332 245444444443
No 463
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.93 E-value=0.083 Score=51.83 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.6
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhccC
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHKF 243 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~f 243 (1011)
-|.++||.|+||||+.+++++.+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999998776555
No 464
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.91 E-value=0.3 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
..+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999997644
No 465
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.91 E-value=0.22 Score=54.90 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=28.7
Q ss_pred HHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHH
Q 001805 201 LKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 201 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
...|.++|..+-...+++-|+|.+|+|||+|+..++-
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 3456667765445568899999999999999988764
No 466
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.89 E-value=0.38 Score=53.64 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=23.7
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh--ccCCceeEe
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS--HKFEGSSFL 249 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~ 249 (1011)
.++|.++|+.|+||||-...++.++. ..-..+.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiI 239 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAII 239 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEE
Confidence 68999999999999985544444433 333444444
No 467
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.89 E-value=0.08 Score=53.44 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.0
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
.+++|.|++|+||||||+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988654
No 468
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.87 E-value=0.12 Score=51.28 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.8
Q ss_pred CceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
...+++|+|..|+|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999987754
No 469
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.85 E-value=0.2 Score=54.74 Aligned_cols=54 Identities=15% Similarity=0.044 Sum_probs=37.8
Q ss_pred ccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCc
Q 001805 188 SGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEG 245 (1011)
Q Consensus 188 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 245 (1011)
|...+.++=.......+...+..+ +-|.|.|.+|+||||+|+.++..+...|-.
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~r 94 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCVR 94 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeEE
Confidence 344445555555556666666432 459999999999999999999988755543
No 470
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.85 E-value=0.38 Score=50.70 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..+++|.|..|.|||||.+.++..
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999764
No 471
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.83 E-value=0.3 Score=50.39 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.4
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
..+++|.|..|.|||||++.++....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 36899999999999999999876543
No 472
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.75 E-value=0.071 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=21.7
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 217 MIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
+|+|+|+.|+|||||++.+.+.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765443
No 473
>COG4240 Predicted kinase [General function prediction only]
Probab=92.71 E-value=0.36 Score=48.79 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=47.6
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhccC-CceeEeeehhhhhccCChHHHHHHHHHH----HhCCCCCCccccccch
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHKF-EGSSFLANVREISKEGGLISLQKQLLSQ----LLKLPNNGIWNVYDGI 287 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~l~~l~~~ll~~----l~~~~~~~~~~~~~~~ 287 (1011)
+++-++||.|+-|.||||+|..++..+.... +.+.... +.+.. -...-+..++++ +....-....+++-+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS-LDDlY---lthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-LDDLY---LTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee-hhhhh---cchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 4578999999999999999999999777666 4444432 11111 112222333333 1222333445555556
Q ss_pred HHHHhhhcCCc
Q 001805 288 NIIGSRLHHKK 298 (1011)
Q Consensus 288 ~~l~~~L~~k~ 298 (1011)
+.+....+++.
T Consensus 124 nVLnai~~g~~ 134 (300)
T COG4240 124 NVLNAIARGGP 134 (300)
T ss_pred HHHHHHhcCCC
Confidence 66666655553
No 474
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=1.3 Score=52.16 Aligned_cols=150 Identities=21% Similarity=0.225 Sum_probs=81.7
Q ss_pred cccccchhHHHHHHHhhcCC-----------CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCCh
Q 001805 193 NLVGIDSHLKNLRLLMDKGS-----------NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGL 261 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l 261 (1011)
++=|+.+..+.+++.+.-.. .-..-|.++|++|.|||-||.+++....-+ |+. + .+.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fis-v------KGP 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FIS-V------KGP 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEE-e------cCH
Confidence 34466666666666665221 112348899999999999999987754322 222 1 111
Q ss_pred HHHHHHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHH-------------HHHHHhcCCCCC--CCCc
Q 001805 262 ISLQKQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIK-------------QLECLAGKREWF--GPGS 326 (1011)
Q Consensus 262 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs 326 (1011)
+++.+..+..+. ...+.+.+.-..+++.+.+|..+... .+..++..++.. -.|.
T Consensus 736 -----ElL~KyIGaSEq------~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 -----ELLSKYIGASEQ------NVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred -----HHHHHHhcccHH------HHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 334443332221 22333444456799999999986532 255555544411 1355
Q ss_pred eEEE-EeCCch----hhhccCcCcEEEcCCCCHHHHHHHHHHHh
Q 001805 327 RIII-TSRDKH----LLMTHGVDEVYKLRELHDDNALRLFCKKA 365 (1011)
Q Consensus 327 ~IIi-TTR~~~----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 365 (1011)
-|+- |||..- +++....++.+.-+.-++.|-++.|...+
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 5554 455332 22222334444555566677777775554
No 475
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.68 E-value=0.19 Score=61.19 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=21.1
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
...++|+|..|.|||||++.+...
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999763
No 476
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.66 E-value=0.36 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.3
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..+++|.|..|.|||||++.++..
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999753
No 477
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.65 E-value=0.23 Score=46.81 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=30.8
Q ss_pred ccccCCCcceeEEecCCCCCCCCCCCccCCCCCeeecccCCCCccccCc-ccccCCCCCeeeeC
Q 001805 526 EIVGSMKCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPR-NISALKYHPTWNLS 588 (1011)
Q Consensus 526 ~~~~~~~~Lr~L~l~~~~~~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~L~ 588 (1011)
.+|.++++|+.+.+.. .++.++...|.++.+|+.+.+.+ .+..++. .+.++..|+.+.+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEET
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeeccccccccccc
Confidence 4566777777777764 46666666677777777777765 2555554 45555555556664
No 478
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.63 E-value=0.037 Score=34.22 Aligned_cols=17 Identities=29% Similarity=0.501 Sum_probs=7.3
Q ss_pred hhhcccCCccccccCcc
Q 001805 606 VLELHLEGTAIRGLPIS 622 (1011)
Q Consensus 606 L~~L~L~~~~i~~lp~s 622 (1011)
|++|+|++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444443
No 479
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.63 E-value=0.14 Score=49.07 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=26.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhc-cCCceeEee
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSH-KFEGSSFLA 250 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~ 250 (1011)
++|.|+|..|+|||||++.+.+.+.. .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999998764 455444443
No 480
>PRK15453 phosphoribulokinase; Provisional
Probab=92.62 E-value=0.16 Score=54.16 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.7
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
....+|+|.|.+|+||||+|+++++.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34579999999999999999999876643
No 481
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.62 E-value=0.1 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.5
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 482
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.59 E-value=0.2 Score=52.75 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=34.9
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
..|.++|..+-.....+.|.|.+|.|||+||.+++.....+-+.++|+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455556444445679999999999999999988765444445566764
No 483
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.59 E-value=0.42 Score=49.45 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
..+++|.|..|.|||||++.++..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999998753
No 484
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.56 E-value=0.62 Score=48.04 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.8
Q ss_pred CceEEEEEecCCchhHHHHHHHHHH
Q 001805 214 DVRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 214 ~~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
...+++|.|..|.|||||++.++..
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 3468999999999999999998764
No 485
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.54 E-value=0.098 Score=52.35 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhh
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTS 240 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~ 240 (1011)
..|.|+|+.|.||||+|+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4699999999999999999988753
No 486
>PRK14530 adenylate kinase; Provisional
Probab=92.44 E-value=0.099 Score=54.54 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=21.1
Q ss_pred EEEEEecCCchhHHHHHHHHHHh
Q 001805 217 MIGICGMGGIGKTTLARVVYDLT 239 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~~~~ 239 (1011)
.|.|.|++|+||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 487
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=92.42 E-value=0.15 Score=55.94 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=23.2
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhcc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSHK 242 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 242 (1011)
|++.+.|-||+||||+|.+.+-..+.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~ 28 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR 28 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC
Confidence 688999999999999998888766554
No 488
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.42 E-value=0.19 Score=55.90 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=54.7
Q ss_pred ceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhcc--CChHHHHHHHHHHHhCCCCCCccccccchHHHHh
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKE--GGLISLQKQLLSQLLKLPNNGIWNVYDGINIIGS 292 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~--~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 292 (1011)
...|.|.|..|.||||+++++...+... +.++-+.+..+..-. ..... + ...............+.++.
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~----~----~~~~~~~~~~~~~~~~ll~~ 230 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVH----L----LASKGGQGRAKVTTQDLIEA 230 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEE----E----EecCCCCCcCcCcHHHHHHH
Confidence 3569999999999999999998866443 223333333222110 00000 0 00000001111234567888
Q ss_pred hhcCCcEEEEEccCCCHHHHHHHh
Q 001805 293 RLHHKKVLLLIDDVVDIKQLECLA 316 (1011)
Q Consensus 293 ~L~~k~~LlVlDdv~~~~~~~~l~ 316 (1011)
.|+.++=.||++.+...+.++.+.
T Consensus 231 ~LR~~PD~IivGEiR~~ea~~~l~ 254 (332)
T PRK13900 231 CLRLRPDRIIVGELRGAEAFSFLR 254 (332)
T ss_pred HhccCCCeEEEEecCCHHHHHHHH
Confidence 889899999999999887766543
No 489
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.42 E-value=0.26 Score=54.22 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=35.1
Q ss_pred HHHHhhhcCCcEEEEEccCCCHHH---HHHHhcCCCCC--CCCceEEEEeCCchhhhccCcCcEE
Q 001805 288 NIIGSRLHHKKVLLLIDDVVDIKQ---LECLAGKREWF--GPGSRIIITSRDKHLLMTHGVDEVY 347 (1011)
Q Consensus 288 ~~l~~~L~~k~~LlVlDdv~~~~~---~~~l~~~~~~~--~~gs~IIiTTR~~~~~~~~~~~~~~ 347 (1011)
..|...+..++-+++.|.....-+ ...++..+... ..|+.+++.|+.+++..+...+..+
T Consensus 516 ~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li 580 (593)
T COG2401 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLI 580 (593)
T ss_pred HHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeE
Confidence 456666778888999998743211 11111111111 2577888888888888777666543
No 490
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.40 E-value=0.25 Score=53.99 Aligned_cols=50 Identities=24% Similarity=0.220 Sum_probs=35.5
Q ss_pred HHHHHHHhh-cCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 201 LKNLRLLMD-KGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 201 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
...|...|. .+-+..+++-|+|..|+||||||..+.......-...+|++
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 345666664 22234689999999999999999988877665555567765
No 491
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=92.40 E-value=0.43 Score=59.47 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.2
Q ss_pred ceEEEEEecCCchhHHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYDL 238 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~~ 238 (1011)
...++|+|+.|.|||||++.+...
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~gl 530 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQNL 530 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999998763
No 492
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.39 E-value=0.28 Score=55.96 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=33.1
Q ss_pred HHHhhhcCCcEEEEEccCCC---HHH---HHHHhcCCCCCCCCceEEEEeCCchhhhccCcC
Q 001805 289 IIGSRLHHKKVLLLIDDVVD---IKQ---LECLAGKREWFGPGSRIIITSRDKHLLMTHGVD 344 (1011)
Q Consensus 289 ~l~~~L~~k~~LlVlDdv~~---~~~---~~~l~~~~~~~~~gs~IIiTTR~~~~~~~~~~~ 344 (1011)
.+.+.|-.++-|+.||+-.+ .+. ++..+... ..+ .++|++|+++.+...++.
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~-~lVi~sh~QDfln~vCT~ 288 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRI-ILVIVSHSQDFLNGVCTN 288 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCc-eEEEEecchhhhhhHhhh
Confidence 34445567899999998743 333 33333333 223 689999999887765543
No 493
>PRK05973 replicative DNA helicase; Provisional
Probab=92.38 E-value=0.36 Score=50.64 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=28.5
Q ss_pred CCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEee
Q 001805 213 NDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLA 250 (1011)
Q Consensus 213 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 250 (1011)
....++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568999999999999999998876544444455553
No 494
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.37 E-value=0.097 Score=50.85 Aligned_cols=20 Identities=40% Similarity=0.775 Sum_probs=18.4
Q ss_pred EEEEEecCCchhHHHHHHHH
Q 001805 217 MIGICGMGGIGKTTLARVVY 236 (1011)
Q Consensus 217 vv~I~G~gGiGKTtLA~~~~ 236 (1011)
.|+|.|.||+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 495
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.37 E-value=0.28 Score=54.51 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=27.9
Q ss_pred HHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHH
Q 001805 202 KNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 202 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
..|.++|..+-....+.-|+|.+|+|||+|+..++-
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 455666764445567888999999999999988864
No 496
>PRK10436 hypothetical protein; Provisional
Probab=92.37 E-value=0.51 Score=54.80 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=60.7
Q ss_pred cccch-hHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHHHHHHHHh
Q 001805 195 VGIDS-HLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQKQLLSQLL 273 (1011)
Q Consensus 195 vGr~~-~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 273 (1011)
.|... .++.+.+++.. ...+|.|.|+.|.||||...++.+.+...-..++-+.+--+.. -.++. +.
T Consensus 200 LG~~~~~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~-l~gi~--------Q~- 266 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIP-LAGIN--------QT- 266 (462)
T ss_pred cCcCHHHHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcccc-CCCcc--------eE-
Confidence 34444 34455665543 2358999999999999998777766543322222222211110 00100 00
Q ss_pred CCCCCCccccccchHHHHhhhcCCcEEEEEccCCCHHHHHHHh
Q 001805 274 KLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDIKQLECLA 316 (1011)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~~~~l~ 316 (1011)
......-......++..|+..+=.|++..+.+.+..+...
T Consensus 267 ---~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al 306 (462)
T PRK10436 267 ---QIHPKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAI 306 (462)
T ss_pred ---eeCCccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHH
Confidence 0000111234677888899999999999999988766433
No 497
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=92.32 E-value=0.4 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred ceEEEEEecCCchhHHHHHHHHH
Q 001805 215 VRMIGICGMGGIGKTTLARVVYD 237 (1011)
Q Consensus 215 ~~vv~I~G~gGiGKTtLA~~~~~ 237 (1011)
...++|+|..|.|||||++.+..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 498
>PRK13975 thymidylate kinase; Provisional
Probab=92.25 E-value=0.12 Score=53.08 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=23.5
Q ss_pred eEEEEEecCCchhHHHHHHHHHHhhc
Q 001805 216 RMIGICGMGGIGKTTLARVVYDLTSH 241 (1011)
Q Consensus 216 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 241 (1011)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998764
No 499
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.74 Score=56.75 Aligned_cols=104 Identities=16% Similarity=0.254 Sum_probs=63.8
Q ss_pred cccccchhHHHHHHHhhcC---CC---CceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHHH
Q 001805 193 NLVGIDSHLKNLRLLMDKG---SN---DVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQK 266 (1011)
Q Consensus 193 ~~vGr~~~l~~l~~~L~~~---~~---~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~~ 266 (1011)
..+|-+..+..|.+.+... .. ..-.+.+.|+.|+|||.||++++.-+.+..+..+-++ +.+. ++
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse~---------~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSEF---------QE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhhh---------hh
Confidence 4667777777776666521 11 2456788999999999999999998866666555553 2221 11
Q ss_pred HHHHHHhCCCCCCccccccchHHHHhhhcCCcE-EEEEccCCCHH
Q 001805 267 QLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKV-LLLIDDVVDIK 310 (1011)
Q Consensus 267 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~-LlVlDdv~~~~ 310 (1011)
.+++.+.+.. ---.+....+.+.++++++ +|.||||+..+
T Consensus 633 --vskligsp~g--yvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 633 --VSKLIGSPPG--YVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred --hhhccCCCcc--cccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 2332222111 0112334577778888875 55679997644
No 500
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.24 E-value=1.8 Score=46.17 Aligned_cols=123 Identities=13% Similarity=0.169 Sum_probs=72.0
Q ss_pred ccccccccccccchhHHHHHHHhhcCCCCceEEEEEecCCchhHHHHHHHHHHhhccCCceeEeeehhhhhccCChHHHH
Q 001805 186 IISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLTSHKFEGSSFLANVREISKEGGLISLQ 265 (1011)
Q Consensus 186 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~l~ 265 (1011)
.++...+.|+|-..-.. +...+.......+.+.++|+.|+|||+-++.+++. .+..+.+. .+..+....+.
T Consensus 66 ~~~~~~~~~l~tkt~r~-~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s----~p~~~l~~----~~p~~~a~~~i 136 (297)
T COG2842 66 ALEKLAPDFLETKTVRR-IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPS----NPNALLIE----ADPSYTALVLI 136 (297)
T ss_pred ccccccccccccchhHh-HhhhhhhhhhcCceEEEeccccchhHHHHHhhccc----Cccceeec----CChhhHHHHHH
Confidence 44456678888765432 22233322233458999999999999999988664 33333333 23333444445
Q ss_pred HHHHHHHhCCCCCCccccccchHHHHhhhcCCcEEEEEccCCCH--HHHHHHhcCCC
Q 001805 266 KQLLSQLLKLPNNGIWNVYDGINIIGSRLHHKKVLLLIDDVVDI--KQLECLAGKRE 320 (1011)
Q Consensus 266 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~--~~~~~l~~~~~ 320 (1011)
..+....+.... ....+....+..++++..-+|++|+.+.. ..++.+....+
T Consensus 137 ~~i~~~~~~~~~---~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 137 LIICAAAFGATD---GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred HHHHHHHhcccc---hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 555544443322 22334556666677888889999998764 34555554443
Done!