Query 001805
Match_columns 1011
No_of_seqs 627 out of 5523
Neff 9.1
Searched_HMMs 29240
Date Tue Mar 26 15:51:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001805.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1103-1106//hhsearch_pdb/001805hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 357.0 20.0 299 195-507 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 348.3 23.0 308 187-506 119-452 (1249)
3 3jrn_A AT1G72930 protein; TIR 1.0 1 1 338.2 11.3 172 13-188 3-175 (176)
4 3ozi_A L6TR; plant TIR domain, 1.0 1 1 336.5 11.3 171 11-183 28-199 (204)
5 1vt4_I APAF-1 related killer D 1.0 1 1 314.0 15.6 281 192-499 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 1.0 1 1 304.1 20.0 303 187-503 119-449 (591)
7 3rgz_A Protein brassinosteroid 1.0 1 1 224.3 19.1 277 530-807 267-555 (768)
8 3rgz_A Protein brassinosteroid 1.0 1 1 223.3 17.1 254 532-786 294-555 (768)
9 4eco_A Uncharacterized protein 1.0 1 1 221.6 17.4 278 524-808 198-530 (636)
10 3h16_A TIR protein; bacteria T 1.0 1 1 220.3 3.0 130 4-135 2-135 (154)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=356.97 Aligned_cols=299 Identities=16% Similarity=0.114 Sum_probs=235.6
Q ss_pred CCCCHHHHHHHHHHHCC-CCCCEEEEEEECCCCHHHHHHHHHHH----HHHCCCCCEEEEEEHHHHHCC--CCHHHHHHH
Q ss_conf 34303478999976229-99815999972289636899999999----960567750475401665223--796999999
Q 001805 195 VGIDSHLKNLRLLMDKG-SNDVRMIGICGMGGIGKTTLARVVYD----LTSHKFEGSSFLANVREISKE--GGLISLQKQ 267 (1011)
Q Consensus 195 vGr~~~~~~l~~~L~~~-~~~~~~i~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~--~~l~~l~~~ 267 (1011)
|||+.++++|.++|..+ ..+.++|+|+|||||||||||+++|+ +++.+|++++|+. + +.. .++..++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-v---s~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-D---SGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-C---CCCSTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-E---CCCCCCCHHHHHHH
T ss_conf 7841799999998725157896289998699998899999999840698746699579999-7---89878799999999
Q ss_pred HHHHHHCCCC-CCCCCCCC-----CHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHC
Q ss_conf 9998828999-98534554-----469999643379-4799971579988999982488978999669999187102330
Q 001805 268 LLSQLLKLPN-NGIWNVYD-----GINIIGSRLHHK-KVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLLMT 340 (1011)
Q Consensus 268 ll~~~l~~~~-~~~~~~~~-----~~~~l~~~l~~k-k~LiVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~~~ 340 (1011)
++.++..... ....+... ....++..+.++ |+||||||||+.+++ .+.. .+||+||||||++.++..
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGG
T ss_pred HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHH
T ss_conf 9999853755345555331469999999999976898489999799971441-5432-----699889997497799997
Q ss_pred CC-CCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH-HHCC
Q ss_conf 38-572798579998789999999752269999628999999999829982378998787519996999999998-8229
Q 001805 341 HG-VDEVYKLRELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFLYGKTTKEWQSAVKR-LKRD 418 (1011)
Q Consensus 341 ~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~-l~~~ 418 (1011)
++ ...+|+|++|+.+||++||.++||+... .+...+++++|+++|+|+||||+++|+.++.+. .+|...+.. +...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~ 358 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR 358 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHCC
T ss_conf 0889738989998989999999987448998-556899999999995998399999999844344-89998757876136
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHH-----------HHCCCCCCCCHHHHHHHHHHC--CCCCC-----------CCHHH
Q ss_conf 8457999999831399655577774-----------211346898878999998638--99941-----------22111
Q 001805 419 SENEILDILQISFDGLKETEKEIFL-----------DIACFHRGENRDYVTKILDYC--DFDPV-----------IGIRV 474 (1011)
Q Consensus 419 ~~~~i~~~l~~sy~~L~~~~k~~fl-----------~la~f~~~~~~~~~~~~~~~~--~~~~~-----------~~i~~ 474 (1011)
....+..+++.||+.|+.+.|.||+ ++|+||++++++ ..+|.+. |+... ..+..
T Consensus 359 ~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~ 436 (549)
T 2a5y_B 359 GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKR 436 (549)
T ss_dssp CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE--EEEEEEECCCEECCCCCCCCHHHHHHHHHH
T ss_conf 477789897516202267999997526522336743235608997666--533110135500267789999999999999
Q ss_pred CCCCCCEEEECC---CEEEEHHHHHHHHHHHHHHCC
Q ss_conf 024661799228---937300799999999984308
Q 001805 475 LIDKSLIEVLSN---NQLWMHDFLREMGQQIVKRQC 507 (1011)
Q Consensus 475 L~~~sLi~~~~~---~~~~mHdli~~~~~~i~~~~~ 507 (1011)
|+++||++.... .+|.|||++|++++.++.+++
T Consensus 437 L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 987588367147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=348.30 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=241.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHH---HHCCCCCEEEEEEHHHHHCCCCHHH
Q ss_conf 4446556234303478999976229998159999722896368999999999---6056775047540166522379699
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDL---TSHKFEGSSFLANVREISKEGGLIS 263 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~l~~ 263 (1011)
+|..+..||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ....|...+||..++... ......
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 197 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLLM 197 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCC-CHHHHH
T ss_conf 7999864125799999999998613588777999918988888999998607567886278817999978857-267999
Q ss_pred HHHHHHHHHHCCCC---CCCCCCCCCHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHH
Q ss_conf 99999998828999---98534554469999643379--47999715799889999824889789996699991871023
Q 001805 264 LQKQLLSQLLKLPN---NGIWNVYDGINIIGSRLHHK--KVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHLL 338 (1011)
Q Consensus 264 l~~~ll~~~l~~~~---~~~~~~~~~~~~l~~~l~~k--k~LiVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~~ 338 (1011)
....++..+..... ....+.......++..+.++ |+||||||||+..+++.+ ++|++||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHH
T ss_conf 999999986553033347887778999999999735678789999567997788763-------6897899992778998
Q ss_pred HC-CCCCCEEECCC-CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 30-38572798579-99878999999975226999962899999999982998237899878751999699999999882
Q 001805 339 MT-HGVDEVYKLRE-LHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFLYGKTTKEWQSAVKRLK 416 (1011)
Q Consensus 339 ~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~ 416 (1011)
.. .+....++++. |+.+||++||...++.. .+.+++.+++|+++|+|+||||+++|++|+.+. .+|...++++.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC---HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHH
T ss_conf 76348843798258888788999999865798---134838899999984997799999999862480-57999999986
Q ss_pred CCC-----------HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC--HHHHHHHHHHCCCCCCCCHHHCCCCCCEEE
Q ss_conf 298-----------4579999998313996555777742113468988--789999986389994122111024661799
Q 001805 417 RDS-----------ENEILDILQISFDGLKETEKEIFLDIACFHRGEN--RDYVTKILDYCDFDPVIGIRVLIDKSLIEV 483 (1011)
Q Consensus 417 ~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~~~~~~~~~~~~~~~~i~~L~~~sLi~~ 483 (1011)
... ...+..+|++||+.|++++|.||+++|+||+++. .+.+..+|...+...+..++.|+++||++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~ 426 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFC 426 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 50443034655644677999999899867999999999728137997518999998858988899999999974463389
Q ss_pred ECCC---EEEEHHHHHHHHHHHHHHC
Q ss_conf 2289---3730079999999998430
Q 001805 484 LSNN---QLWMHDFLREMGQQIVKRQ 506 (1011)
Q Consensus 484 ~~~~---~~~mHdli~~~~~~i~~~~ 506 (1011)
..++ +|.||+++|+++++...++
T Consensus 427 ~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 427 NRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 63798118996689999987450678
No 3
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=338.17 Aligned_cols=172 Identities=44% Similarity=0.735 Sum_probs=162.6
Q ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCHHH
Q ss_conf 99996102897364574766618999999972999288518868889766078999987215688982477556720199
Q 001805 13 PLPHWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTWCLD 92 (1011)
Q Consensus 13 ~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~wc~~ 92 (1011)
++.+++|||||||||+|+|++|++||+++|+++|+++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|.||++
T Consensus 3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~ 82 (176)
T 3jrn_A 3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD 82 (176)
T ss_dssp ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHH
T ss_conf 98898884999786746674899999999997899899876423577855799999999688899982488677716899
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99999998750897269989752257720013450999999999996242789999999999975322843568643589
Q 001805 93 ELVHILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFARHEEILAQNKEKVQKWRDTLKEVANICGWELKDRNQSEF 172 (1011)
Q Consensus 93 El~~~~~~~~~~~~~~vipv~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~e~~~ 172 (1011)
||++|++|....+ ++|+||||+|+|++||+|+|+|+++|++|+++ .+.+++++||.||+++|+++||++. ++|+++
T Consensus 83 EL~~i~~~~~~~~-~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~-~~e~~~ 158 (176)
T 3jrn_A 83 ELVTIMDFEKKGS-ITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG-DDDSKL 158 (176)
T ss_dssp HHHHHHHHHHTTS-CEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC-SCHHHH
T ss_pred HHHHHHHHHCCCC-CEEEEEEECCCHHHHHHCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHCCCCEECC-CCHHHH
T ss_conf 9998776541588-77999984487888353157099999999820--4789999999999997466635258-879999
Q ss_pred HHHHHHHCCCC-CCCCC
Q ss_conf 99987620367-98644
Q 001805 173 ILEVVKVISSK-SPIIS 188 (1011)
Q Consensus 173 i~~iv~~i~~~-~~~~~ 188 (1011)
|++||++|..+ +++++
T Consensus 159 i~~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 159 VDKIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999998667898
No 4
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=1.00 E-value=1 Score=336.50 Aligned_cols=171 Identities=40% Similarity=0.755 Sum_probs=159.5
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCCCH
Q ss_conf 99999961028973645747666189999999729992885188688897660789999872156889824775567201
Q 001805 11 PYPLPHWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIVFSRNYACSTWC 90 (1011)
Q Consensus 11 ~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v~s~~y~~s~wc 90 (1011)
....+.++|||||||+|+|+|++|++||+++|+++|+++|+|++++++|+.|.++|.+||++|+++|+|||++|++|.||
T Consensus 28 s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WC 107 (204)
T 3ozi_A 28 SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWC 107 (204)
T ss_dssp ------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHH
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHCCEEEEEEECCCCCCCHH
T ss_conf 67788857749996536477787999999999978995898487667877047999999984847668877553257478
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCC-CCH
Q ss_conf 9999999998750897269989752257720013450999999999996242789999999999975322843568-643
Q 001805 91 LDELVHILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFARHEEILAQNKEKVQKWRDTLKEVANICGWELKD-RNQ 169 (1011)
Q Consensus 91 ~~El~~~~~~~~~~~~~~vipv~~~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~e 169 (1011)
++||++|++|....+.++|+||||+|+|++||+|+|+||++|++|++++. .+++++||.||+++|+++||++.+ ..|
T Consensus 108 l~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~~~e 185 (204)
T 3ozi_A 108 LMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKNDKQ 185 (204)
T ss_dssp HHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTTSCH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHCCCCHHHHHHHHHHHHC--HHHHHHHHHHHHHHHCCCCEECCCCCCH
T ss_conf 99999999988751770357799606889977412419999999998617--8899999999999846675632899989
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 58999987620367
Q 001805 170 SEFILEVVKVISSK 183 (1011)
Q Consensus 170 ~~~i~~iv~~i~~~ 183 (1011)
+++|++||.+|+.+
T Consensus 186 ~~~i~~Iv~di~~k 199 (204)
T 3ozi_A 186 GAIADKVSADIWSH 199 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=313.99 Aligned_cols=281 Identities=17% Similarity=0.148 Sum_probs=211.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH--HHHCCCCCEEEEEEHHHHHCCCCHHHHHHHHH
Q ss_conf 5623430347899997622999815999972289636899999999--96056775047540166522379699999999
Q 001805 192 KNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYD--LTSHKFEGSSFLANVREISKEGGLISLQKQLL 269 (1011)
Q Consensus 192 ~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~--~~~~~f~~~~~~~~~~~~~~~~~l~~l~~~ll 269 (1011)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+..++|.++ +.......+...++
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsV---s~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL---KNCNSPETVLEMLQ 203 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEEC---CCSSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE---CCCCCHHHHHHHHH
T ss_conf 87789289999999997435-897189997699966799999999714988748993899982---89999999999999
Q ss_pred HHHHC---CCCCC-------CCCCCCCHHHHHHHH---CCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCH
Q ss_conf 98828---99998-------534554469999643---379479997157998899998248897899966999918710
Q 001805 270 SQLLK---LPNNG-------IWNVYDGINIIGSRL---HHKKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKH 336 (1011)
Q Consensus 270 ~~~l~---~~~~~-------~~~~~~~~~~l~~~l---~~kk~LiVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~ 336 (1011)
..+.. ..... ..+.......++..+ .++|+||||||||+.++|+.+ ++||+||||||++.
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~ 276 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQ 276 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH-------CCCEEEEEECCCHH
T ss_conf 99862272102200134679999999999999999850478879987186818999864-------79829999443737
Q ss_pred HHHCCCCCCEEECC------CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--CHHHH
Q ss_conf 23303857279857------99987899999997522699996289999999998299823789987875199--96999
Q 001805 337 LLMTHGVDEVYKLR------ELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFLYGK--TTKEW 408 (1011)
Q Consensus 337 ~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLal~~lg~~L~~~--~~~~w 408 (1011)
++..+.....|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +..+|
T Consensus 277 Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC-----HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99866897089946865568969999999999974-998-----89999999---6989999999999984889979998
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCH--HHHHHHHHHCCC-CCCCCHHHCCCCCCEEEE
Q ss_conf 999998822984579999998313996555-7777421134689887--899999863899-941221110246617992
Q 001805 409 QSAVKRLKRDSENEILDILQISFDGLKETE-KEIFLDIACFHRGENR--DYVTKILDYCDF-DPVIGIRVLIDKSLIEVL 484 (1011)
Q Consensus 409 ~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~la~f~~~~~~--~~~~~~~~~~~~-~~~~~i~~L~~~sLi~~~ 484 (1011)
... ....+..+|+.||+.|++++ |.||+++|+||++..+ +.+..+|...+. .+...++.|+++||++..
T Consensus 348 ~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d 420 (1221)
T 1vt4_I 348 KHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420 (1221)
T ss_dssp HHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBC
T ss_pred HCC-------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEE
T ss_conf 669-------8618999999999848899999999997177999987799999876677889999999999961988986
Q ss_pred C-CCEEEEHHHHHHHH
Q ss_conf 2-89373007999999
Q 001805 485 S-NNQLWMHDFLREMG 499 (1011)
Q Consensus 485 ~-~~~~~mHdli~~~~ 499 (1011)
. ..+|+|||+++++.
T Consensus 421 ~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 421 PKESTISIPSIYLELK 436 (1221)
T ss_dssp SSSSEEBCCCHHHHHH
T ss_pred CCCCEEEEHHHHHHHH
T ss_conf 8999898609999985
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.14 Aligned_cols=303 Identities=18% Similarity=0.262 Sum_probs=224.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHH---HCCCCCEEEEEEHHHHHCCCCHHH
Q ss_conf 44465562343034789999762299981599997228963689999999996---056775047540166522379699
Q 001805 187 ISGILKNLVGIDSHLKNLRLLMDKGSNDVRMIGICGMGGIGKTTLARVVYDLT---SHKFEGSSFLANVREISKEGGLIS 263 (1011)
Q Consensus 187 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~i~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~~~~~~~~~~~~~~l~~ 263 (1011)
.|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++. ...|+..+||..+.... ...+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~-~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQD-KSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCC-HHHHHH
T ss_pred CCCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCC-HHHHHH
T ss_conf 9999871405299999999998603688846999769989889999999835568885289965999778776-688999
Q ss_pred HHHHHHHHHHCCC----CCCCCCCCCCHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHH
Q ss_conf 9999999882899----99853455446999964337--94799971579988999982488978999669999187102
Q 001805 264 LQKQLLSQLLKLP----NNGIWNVYDGINIIGSRLHH--KKVLLLIDDVVDIKQLECLAGKREWFGPGSRIIITSRDKHL 337 (1011)
Q Consensus 264 l~~~ll~~~l~~~----~~~~~~~~~~~~~l~~~l~~--kk~LiVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~~ 337 (1011)
....+... ++.. .....+.......+...+.+ +++||||||+|+..+++.+ ++|++||||||+..+
T Consensus 198 ~l~~l~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 198 KLQNLCTR-LDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHH-HCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGG
T ss_pred HHHHHHHH-HCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHH
T ss_conf 99999998-5035565567998899999999999706799869998589987999876-------379869998988177
Q ss_pred HHCCCCCCEEEC---CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 330385727985---79998789999999752269999628999999999829982378998787519996999999998
Q 001805 338 LMTHGVDEVYKL---RELHDDNALRLFCKKAFKTHQPKKGYEQLSEWVTKYSGGLPLALKVLGSFLYGKTTKEWQSAVKR 414 (1011)
Q Consensus 338 ~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~iv~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~ 414 (1011)
+.... ...+++ ++|+.+|+++||...++.. .....+.+.+|+++|+|+||||+++|+.++... .+|...+..
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~ 344 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHHCC-CCCEEEECCCCCCHHHHHHHHHHHHCCC---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHH
T ss_conf 77348-9826861588999899999999871898---310459999999995898379999999984484-359999999
Q ss_pred HHCCC-----------HHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCC--HHHHHHHHHHCCCCCCCCHHHCCCCCCE
Q ss_conf 82298-----------4579999998313996555777742113468988--7899999863899941221110246617
Q 001805 415 LKRDS-----------ENEILDILQISFDGLKETEKEIFLDIACFHRGEN--RDYVTKILDYCDFDPVIGIRVLIDKSLI 481 (1011)
Q Consensus 415 l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~~~~~~~~~~~~~~~~i~~L~~~sLi 481 (1011)
+.... ...+..++..||+.|++++|.||+++|+|+.+.. .+.+..+|..........+..|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLL 424 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 98868987651146543789999999998689999999997455679985089999999665889999999999859586
Q ss_pred EEECC---CEEEEHHHHHHHHHHHH
Q ss_conf 99228---93730079999999998
Q 001805 482 EVLSN---NQLWMHDFLREMGQQIV 503 (1011)
Q Consensus 482 ~~~~~---~~~~mHdli~~~~~~i~ 503 (1011)
+...+ .+|.||+++|+++++..
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHHT
T ss_pred EEECCCCCCEEEECHHHHHHHHHHH
T ss_conf 8854898567997689999998653
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=224.35 Aligned_cols=277 Identities=22% Similarity=0.167 Sum_probs=136.2
Q ss_pred CCCCCEEEEECCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC-CCCCCHHH
Q ss_conf 7776034884399988-888887467899706312687775325834214799994630899999767311-16851002
Q 001805 530 SMKCLSDLLLDGTDIK-ELPILPFELLSGLVQLNVEGCNKLERLPRNISALKYHPTWNLSGLLKFSNFPEI-MTNMEHVL 607 (1011)
Q Consensus 530 ~~~~Lr~L~l~~~~l~-~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~L~~~~~~~~~p~~-~~~l~~L~ 607 (1011)
.+++|+.|++++|.+. .+|......+++|+.|++++|......|..+.++..|++|++++|...+.+|.. +..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCC
T ss_conf 36878989791785577258888844686889989689677842367755877667789788525737978872488887
Q ss_pred HCCCCCCCCC-CCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 3035786654-4676667898-8868832488787424865646--6334500013534677677434899988599747
Q 001805 608 ELHLEGTAIR-GLPISIELFS-GLVLLNLRDCKNLLSLPCTING--LKSLKKLYLSGCSKLKNVPENLGKVESLEVLELS 683 (1011)
Q Consensus 608 ~L~L~~~~i~-~lp~si~~l~-~L~~L~L~~c~~l~~lp~~i~~--l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~ 683 (1011)
+|++++|.+. .+|..+..++ +|+.|++++|.....+|..+.. +++|++|++++|...+.+|..++.+++|+.|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 88484784376230989863227719986278747876766653324776189897784654248777568987989895
Q ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCE-E
Q ss_conf 9889--997777788883011265889975557998899877965258999989988764588667758978899980-2
Q 001805 684 GCKG--PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFV-T 760 (1011)
Q Consensus 684 ~~~~--~~~~~~~~l~~L~~L~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~p~~~~~l~~L~~L~Ls~n~l~-~ 760 (1011)
+|.+ ..|..+..+++|+.|....+.+....+..+..+++|+.|++++|.+ .+.+|..+..+++|+.|+|++|.+. .
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL-TGEIPSGLSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCC-CCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 8846685467774499889898978815471897882877732999019951-375887881699899897539951896
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCCCCC---CCCCCEEEECCCCCCCCCC
Q ss_conf 2722338999889988588676623888---8875489611887563234
Q 001805 761 APASINRLFNLEELELEDCKRLQSMPQL---PPNIKEVGVNGCASLEKLS 807 (1011)
Q Consensus 761 lp~~i~~l~~L~~L~L~~c~~L~~lp~l---p~~L~~L~l~~c~~L~~l~ 807 (1011)
+|.++..+++|++|++++|+..+.+|.. .++|+.|++.+|.-...+|
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 87688568999989897894337488777088989989898884688279
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=223.29 Aligned_cols=254 Identities=26% Similarity=0.207 Sum_probs=132.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCC-HHHHC
Q ss_conf 76034884399988888887467899706312687775325834-21479999463089999976731116851-00230
Q 001805 532 KCLSDLLLDGTDIKELPILPFELLSGLVQLNVEGCNKLERLPRN-ISALKYHPTWNLSGLLKFSNFPEIMTNME-HVLEL 609 (1011)
Q Consensus 532 ~~Lr~L~l~~~~l~~lp~~~~~~l~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~L~~~~~~~~~p~~~~~l~-~L~~L 609 (1011)
++|+.|++++|.+....+..+..+++|+.|++++|.....+|.. +..+..|++|++++|...+.+|..+..+. +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEE
T ss_conf 86889989689677842367755877667789788525737978872488887884847843762309898632277199
Q ss_pred CCCCCCCCC-CCCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 357866544-6766678--9888688324887874248656466334500013534677677434899988599747988
Q 001805 610 HLEGTAIRG-LPISIEL--FSGLVLLNLRDCKNLLSLPCTINGLKSLKKLYLSGCSKLKNVPENLGKVESLEVLELSGCK 686 (1011)
Q Consensus 610 ~L~~~~i~~-lp~si~~--l~~L~~L~L~~c~~l~~lp~~i~~l~~L~~L~Ls~c~~l~~lp~~l~~l~~L~~L~l~~~~ 686 (1011)
++++|.+.+ +|..+.. +++|+.|++++|.....+|..+..+++|++|++++|...+.+|..++.+++|+.|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred ECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 86278747876766653324776189897784654248777568987989895884668546777449988989897881
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCE-ECCC
Q ss_conf 9--997777788883011265889975557998899877965258999989988764588667758978899980-2272
Q 001805 687 G--PPVSSSWYLPFPISLKRSCSDPTALRLPSLSGLWSLRKLDLSDCDLGEGAIPNDIGNLWSLEELYLSKNSFV-TAPA 763 (1011)
Q Consensus 687 ~--~~~~~~~~l~~L~~L~~~~~~l~~~~~~~l~~l~~L~~L~L~~~~l~~~~~p~~~~~l~~L~~L~Ls~n~l~-~lp~ 763 (1011)
+ ..|..+..+++|+.|+.+.+.+....+..+.++++|+.|++++|.+ .+.+|..++.+++|+.|+|++|.+. .+|.
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred CCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCC-CCCCCHHHHCCCCCCEEECCCCCCCCCCCH
T ss_conf 5471897882877732999019951375887881699899897539951-896876885689999898978943374887
Q ss_pred CCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 23389998899885886766238
Q 001805 764 SINRLFNLEELELEDCKRLQSMP 786 (1011)
Q Consensus 764 ~i~~l~~L~~L~L~~c~~L~~lp 786 (1011)
.+..+++|+.|++++|+..+.+|
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCC
T ss_pred HHCCCCCCCEEECCCCCCCCCCC
T ss_conf 77088989989898884688279
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=221.63 Aligned_cols=278 Identities=15% Similarity=0.167 Sum_probs=224.3
Q ss_pred CCCCCCCCCCCEEEEECCCCCCC------------------CCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63211577760348843999888------------------8888746--789970631268777532583421479999
Q 001805 524 FPEIVGSMKCLSDLLLDGTDIKE------------------LPILPFE--LLSGLVQLNVEGCNKLERLPRNISALKYHP 583 (1011)
Q Consensus 524 ~~~~~~~~~~Lr~L~l~~~~l~~------------------lp~~~~~--~l~~L~~L~L~~~~~l~~lp~~l~~L~~L~ 583 (1011)
.|.+|.++++|+.|++++|.+.+ +|. .++ .+++|++|++++|.....+|..+.++..|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCH-HHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCC
T ss_conf 78777256478789886882366423221222221001024863-22004468788898048857762838883499978
Q ss_pred EEEECCCC-CCC-CCCCCCCCC------CHHHHCCCCCCCCCCCCC--CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 46308999-997-673111685------100230357866544676--66789888688324887874248656466334
Q 001805 584 TWNLSGLL-KFS-NFPEIMTNM------EHVLELHLEGTAIRGLPI--SIELFSGLVLLNLRDCKNLLSLPCTINGLKSL 653 (1011)
Q Consensus 584 ~L~L~~~~-~~~-~~p~~~~~l------~~L~~L~L~~~~i~~lp~--si~~l~~L~~L~L~~c~~l~~lp~~i~~l~~L 653 (1011)
+|++++|. ..+ .+|..+..+ ++|++|++++|.+..+|. .++.+++|+.|++++|...+.+| .+..+++|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCC
T ss_conf 89784798876653357887543046578888898979937766765554257888989690880705166-64788988
Q ss_pred CEECCCCCCCCCCCCCCCCCCCC-CCEEECCCCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC-------CCCC
Q ss_conf 50001353467767743489998-85997479889-9977777888--830112658899755579988-------9987
Q 001805 654 KKLYLSGCSKLKNVPENLGKVES-LEVLELSGCKG-PPVSSSWYLP--FPISLKRSCSDPTALRLPSLS-------GLWS 722 (1011)
Q Consensus 654 ~~L~Ls~c~~l~~lp~~l~~l~~-L~~L~l~~~~~-~~~~~~~~l~--~L~~L~~~~~~l~~~~~~~l~-------~l~~ 722 (1011)
++|++++|... .+|..++.+++ |+.|++++|.+ .+|..+.... +|+.|+.+.+.+....+..+. .+.+
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCC
T ss_conf 98989899403-03375651023686898529827544665533345766889774885788652442002201125898
Q ss_pred CCEEECCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCEECCCCCCCC--------CCCCEEEECCCCCCCCCCC-----C
Q ss_conf 79652589999899887645-88667758978899980227223389--------9988998858867662388-----8
Q 001805 723 LRKLDLSDCDLGEGAIPNDI-GNLWSLEELYLSKNSFVTAPASINRL--------FNLEELELEDCKRLQSMPQ-----L 788 (1011)
Q Consensus 723 L~~L~L~~~~l~~~~~p~~~-~~l~~L~~L~Ls~n~l~~lp~~i~~l--------~~L~~L~L~~c~~L~~lp~-----l 788 (1011)
|+.|++++|.+.. +|..+ ..+++|+.|+|++|.+..+|..+... ++|+.|++++|. ++.+|. -
T Consensus 435 L~~L~Ls~N~l~~--lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~ 511 (636)
T 4eco_A 435 VSSINLSNNQISK--FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATT 511 (636)
T ss_dssp EEEEECCSSCCCS--CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTT
T ss_pred CCEEECCCCCCCC--CCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCC-CCCCCHHHHHCC
T ss_conf 8889772796686--7878871589889898979978873978840440012214773389896993-881685453445
Q ss_pred CCCCCEEEECCCCCCCCCCC
Q ss_conf 88754896118875632342
Q 001805 789 PPNIKEVGVNGCASLEKLSD 808 (1011)
Q Consensus 789 p~~L~~L~l~~c~~L~~l~~ 808 (1011)
.++|+.|++++|. ++.+|.
T Consensus 512 l~~L~~L~Ls~N~-l~~ip~ 530 (636)
T 4eco_A 512 LPYLVGIDLSYNS-FSKFPT 530 (636)
T ss_dssp CTTCCEEECCSSC-CSSCCC
T ss_pred CCCCCEEECCCCC-CCCCCH
T ss_conf 8876989898998-877682
No 10
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=1.00 E-value=1 Score=220.27 Aligned_cols=130 Identities=22% Similarity=0.328 Sum_probs=116.7
Q ss_pred CCCCCCCCCC----CCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHCCEEEEE
Q ss_conf 1148998999----999610289736457476661899999997299928851886888976607899998721568898
Q 001805 4 HKVSPFVPYP----LPHWKYDVFLSFRGVDTRKNFTDHLYTALDQKGIIVFRDDKELERGESISPGLFKAIEESKISIIV 79 (1011)
Q Consensus 4 ~~~~~~~~~~----~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~i~~~i~~s~~~i~v 79 (1011)
+++++++|++ ++.++|||||||+++| +..|+.||+.+|+++|+++|+|++++.+|+.|.++|.+||++|+++|+|
T Consensus 2 ~~~~~~s~~s~~~~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v 80 (154)
T 3h16_A 2 AMKPTAGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVV 80 (154)
T ss_dssp ----------------CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCCCC-HHHHHHHHHHHHHHCCCCEEECHHHCCCCCHHHHHHHHHHHHCCEEEEE
T ss_conf 756778998732238888864999784657-5999999999998789939975776778547999999999857589888
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 24775567201999999999875089726998975225772001345099999999
Q 001805 80 FSRNYACSTWCLDELVHILECKNKNHQQMVYPIFYDVEPTDVRKQSGILEAVFARH 135 (1011)
Q Consensus 80 ~s~~y~~s~wc~~El~~~~~~~~~~~~~~vipv~~~v~p~~vr~~~g~~~~~~~~~ 135 (1011)
+|++|+.|.||+.||..++++...++ ++|+||||+|+|++||+|+|.|+++|+..
T Consensus 81 ~S~~y~~S~wc~~El~~~~~~~~~~~-~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 81 LSTHFFKKEWPQKELDGLFQLESSGR-SRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp EEHHHHTTCCCHHHHHHHTCCCTTSC-CCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred ECCCHHCCHHHHHHHHHHHHHHHCCC-CEEEEEEECCCHHHHHHCCCCHHHHHHHH
T ss_conf 28121008079999999999986599-88999994687899752891489887353
Done!