Your job contains 1 sequence.
>001806
MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL
SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY
GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE
KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH
MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR
LHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRL
DNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDAFN
SDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVC
SWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMT
DPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSI
MADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHP
PVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHE
DSGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMHGSPLPYAAAP
YVPPVPSYQEYGVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHH
PNRRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYSGYQ
SPAAGSFNQWGGANQSMPRGYGQGQHHQRRDGGYQQYHDQQRNYSHLQGNHQQRGNQGQH
QPRGNQGQYVRDNQHRGNYGHHQQNNQQRNNQFTALDRRPKRPPPGGDGH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001806
(1010 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2005614 - symbol:XRN3 "5'-3' exoribonuclease 3... 2855 3.9e-309 2
TAIR|locus:2020073 - symbol:XRN4 "exoribonuclease 4" spec... 1019 3.8e-204 3
UNIPROTKB|F1MKX7 - symbol:XRN2 "Uncharacterized protein" ... 765 1.3e-143 3
UNIPROTKB|Q5ZIP4 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 758 9.1e-143 3
MGI|MGI:894687 - symbol:Xrn2 "5'-3' exoribonuclease 2" sp... 765 1.7e-141 3
ZFIN|ZDB-GENE-040426-2874 - symbol:xrn2 "5'-3' exoribonuc... 760 3.5e-141 3
UNIPROTKB|E2RMS9 - symbol:XRN2 "Uncharacterized protein" ... 777 5.0e-140 2
UNIPROTKB|F1PB11 - symbol:XRN2 "Uncharacterized protein" ... 777 5.0e-140 2
UNIPROTKB|B4DZC3 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 769 5.0e-140 2
UNIPROTKB|Q9H0D6 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 769 5.0e-140 2
UNIPROTKB|F1SAU5 - symbol:XRN2 "Uncharacterized protein" ... 773 1.3e-139 2
UNIPROTKB|Q5R4L5 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 764 1.3e-139 2
RGD|1310218 - symbol:Xrn2 "5'-3' exoribonuclease 2" speci... 768 1.2e-138 2
UNIPROTKB|Q60SG7 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1257 5.3e-132 2
FB|FBgn0031868 - symbol:Rat1 species:7227 "Drosophila mel... 694 9.3e-129 3
WB|WBGene00006964 - symbol:xrn-2 species:6239 "Caenorhabd... 1235 2.7e-128 2
UNIPROTKB|Q9U299 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1235 2.7e-128 2
POMBASE|SPAC26A3.12c - symbol:dhp1 "5'-3' exoribonuclease... 628 2.9e-125 3
CGD|CAL0003816 - symbol:RAT1 species:5476 "Candida albica... 1142 7.6e-118 2
UNIPROTKB|Q5AMG5 - symbol:RAT1 "5'-3' exoribonuclease 2" ... 1142 7.6e-118 2
SGD|S000005574 - symbol:RAT1 "Nuclear 5' to 3' single-str... 611 1.4e-107 3
DICTYBASE|DDB_G0269922 - symbol:xrn2 "CCHC-type zinc fing... 615 2.6e-98 3
POMBASE|SPAC17A5.14 - symbol:exo2 "exonuclease II Exo2" s... 422 2.6e-86 3
RGD|1309713 - symbol:Xrn1 "5'-3' exoribonuclease 1" speci... 452 1.4e-84 4
MGI|MGI:891964 - symbol:Xrn1 "5'-3' exoribonuclease 1" sp... 450 4.9e-84 4
UNIPROTKB|Q8IZH2 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 441 8.0e-84 3
UNIPROTKB|F6XNM6 - symbol:XRN1 "Uncharacterized protein" ... 443 2.6e-83 3
UNIPROTKB|E2R2X2 - symbol:XRN1 "Uncharacterized protein" ... 443 2.7e-83 3
UNIPROTKB|J9PAD8 - symbol:XRN1 "Uncharacterized protein" ... 443 2.8e-83 3
UNIPROTKB|E1C8R7 - symbol:XRN1 "Uncharacterized protein" ... 437 3.0e-83 4
UNIPROTKB|F1SKG4 - symbol:XRN1 "Uncharacterized protein" ... 446 7.7e-83 4
UNIPROTKB|E1BMZ8 - symbol:E1BMZ8 "Uncharacterized protein... 443 1.7e-82 4
FB|FBgn0020261 - symbol:pcm "pacman" species:7227 "Drosop... 429 4.1e-82 4
ZFIN|ZDB-GENE-040426-1203 - symbol:xrn1 "5'-3' exoribonuc... 423 5.0e-82 4
DICTYBASE|DDB_G0276137 - symbol:xrn1 "5'-3' exoribonuclea... 374 8.9e-81 4
SGD|S000003141 - symbol:XRN1 "Evolutionarily-conserved 5'... 411 6.6e-78 4
WB|WBGene00012730 - symbol:xrn-1 species:6239 "Caenorhabd... 404 8.2e-78 3
ASPGD|ASPL0000014026 - symbol:AN11052 species:162425 "Eme... 461 5.4e-73 2
GENEDB_PFALCIPARUM|PF11_0074 - symbol:PF11_0074 "exonucle... 305 8.7e-50 3
UNIPROTKB|Q8IIU0 - symbol:PF11_0074 "Exonuclease, putativ... 305 8.7e-50 3
DICTYBASE|DDB_G0289921 - symbol:DDB_G0289921 species:4468... 274 3.7e-37 2
UNIPROTKB|C9JCZ8 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 274 1.4e-36 2
UNIPROTKB|Q4KGS2 - symbol:PFL_1433 "Putative lipoprotein"... 100 0.00041 1
>TAIR|locus:2005614 [details] [associations]
symbol:XRN3 "5'-3' exoribonuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IGI;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009888 "tissue development" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0032204 "regulation of telomere maintenance" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0043247 "telomere maintenance in response to DNA
damage" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC006434
GO:GO:0010587 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:AF286719
EMBL:AY136383 EMBL:BT000175 IPI:IPI00542756 IPI:IPI00903453
PIR:D96786 RefSeq:NP_565114.1 UniGene:At.23685
ProteinModelPortal:Q9FQ03 SMR:Q9FQ03 STRING:Q9FQ03 PaxDb:Q9FQ03
PRIDE:Q9FQ03 EnsemblPlants:AT1G75660.1 GeneID:843900
KEGG:ath:AT1G75660 TAIR:At1g75660 InParanoid:Q9FQ03 OMA:ILREVVY
PhylomeDB:Q9FQ03 Genevestigator:Q9FQ03 Uniprot:Q9FQ03
Length = 1020
Score = 2855 (1010.1 bits), Expect = 3.9e-309, Sum P(2) = 3.9e-309
Identities = 537/745 (72%), Positives = 609/745 (81%)
Query: 35 KLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEG 94
+LPPK DSQVFDSNVITPGTEFM VLSIALQYY+HLRLN+D GW+ IKVILSDANVPGEG
Sbjct: 145 RLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVHLRLNHDVGWKNIKVILSDANVPGEG 204
Query: 95 EHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKC 154
EHKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML LATHEVHFSILREVV+TPGQQ++C
Sbjct: 205 EHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVYTPGQQERC 264
Query: 155 FLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPP 214
FLCGQ GH A+NCEGK K++AGE DEKGD KKPYQFLHIW LREYL+ E RIPNPP
Sbjct: 265 FLCGQMGHFASNCEGKPKKRAGESDEKGDGNDFVKKPYQFLHIWVLREYLELEMRIPNPP 324
Query: 215 FEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSK 274
FEIDLE IVDDFIF+CFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFR+ GYLTDG K
Sbjct: 325 FEIDLERIVDDFIFICFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRSFDGYLTDGCK 384
Query: 275 PSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKA--QARRGDDVEPLAQPDSLV 332
P+L+RVE FIQAVGS+ED+IFQKRA HQR AER+KR+KA +R DD P QPD LV
Sbjct: 385 PNLKRVEQFIQAVGSFEDKIFQKRAMQHQRQAERVKRDKAGKATKRMDDEAPTVQPD-LV 443
Query: 333 PVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEAEN 391
PV+RF GSRLAS P+PSP+Q ++ GR PH KV RLS G+++GAAIV+ EN
Sbjct: 444 PVARFSGSRLASAPTPSPFQSND--GR--------SAPHQKVRRLSPGSSVGAAIVDVEN 493
Query: 392 SFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPE 451
S E+D + R+KSDAFNSD EEDKVKLG+PGW+ERYYEEKF+ TPE
Sbjct: 494 SLESDERENKEELKTKLKELIREKSDAFNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPE 553
Query: 452 EREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGH 511
E E RKDVVL+YTEGLCWVMHYY EGVCSWQWFYPYHYAPFASDLKDL + +I FELG
Sbjct: 554 EMERVRKDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGT 613
Query: 512 PFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKL 571
PFKPFNQLLGVFP+ASSHALPE YR LMTDPNSPI DFYPTDFEVDMNGKR+SWQGIAKL
Sbjct: 614 PFKPFNQLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKL 673
Query: 572 PFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKE 631
PFIDE RLL+ V ++E TLT+EE RRNS M DMLF+ SH L+ +++LD HC+QL +E
Sbjct: 674 PFIDERRLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARE 733
Query: 632 RVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKH 691
RV+ K ++ P+LSDGMNGY++PC+G+ HPPVFRSP+ MEDI+ NQV+C IY+LPDAH+H
Sbjct: 734 RVDFKVKIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVICCIYRLPDAHEH 793
Query: 692 VTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRP-HEN-------------GRHNPHGT 737
+TRPP GVIFPKK V + DLKP P LWHED+GRRP H N GR NP G+
Sbjct: 794 ITRPPPGVIFPKKTVDIGDLKPPPALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGS 853
Query: 738 ISGRQLGEAAHRLVANSLQHMKVDR 762
+SGR LG AAHRLV+NSLQ M DR
Sbjct: 854 VSGRHLGNAAHRLVSNSLQ-MGTDR 877
Score = 135 (52.6 bits), Expect = 3.9e-309, Sum P(2) = 3.9e-309
Identities = 55/188 (29%), Positives = 78/188 (41%)
Query: 719 HEDSGRRPHEN-GRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNGYGDRMHGXXXXXX 777
H + G H N GR NP G++SGR LG AAHRLV+NSLQ M DR Y
Sbjct: 836 HNNHGM--HNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDR--YQTPTDVPAPGYG 890
Query: 778 XXXXXXXXXXXQEYGVY--DQGYNRFSQPRTDSYPAGHSQSSISAAQP--PY-----DGG 828
++G Y G ++QP G+ S P PY +G
Sbjct: 891 YNPPQYVPPIPYQHGGYMAPPGAQGYAQPAPYQNRGGYQPRGPSGRFPSEPYQSQSREGQ 950
Query: 829 YSQHYASNTSHHPNRRYHPQYD-RNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGA 887
++ + +H N+ Q+ + S ++ YN HQ GG + R G G+
Sbjct: 951 HASRGGGYSGNHQNQHQQQQWHGQGGSEQNNPRGYNGQHHHQQGGD-HDRRGRGR---GS 1006
Query: 888 NLYPPQGG 895
+ + QGG
Sbjct: 1007 HHHHDQGG 1014
Score = 61 (26.5 bits), Expect = 2.6e-301, Sum P(2) = 2.6e-301
Identities = 21/62 (33%), Positives = 25/62 (40%)
Query: 862 YNPSGIHQNGGP--RYPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQW---GGANQS 916
Y G +Q GP R+P P S S GGYSG QW GG+ Q+
Sbjct: 922 YQNRGGYQPRGPSGRFPSEPYQSQSREGQHASRGGGYSGNHQNQHQQ-QQWHGQGGSEQN 980
Query: 917 MP 918
P
Sbjct: 981 NP 982
Score = 55 (24.4 bits), Expect = 1.1e-300, Sum P(2) = 1.1e-300
Identities = 18/65 (27%), Positives = 27/65 (41%)
Query: 847 PQYDRNSSGEHPTH----LYNPSGIHQNGGPRYPP-----RPMGSTSSGANLYPPQGGYS 897
P +G P H ++N G+H N G + PP R +G+ + Q G
Sbjct: 817 PALWHEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQMGTD 876
Query: 898 GYQSP 902
YQ+P
Sbjct: 877 RYQTP 881
Score = 44 (20.5 bits), Expect = 1.6e-299, Sum P(2) = 1.6e-299
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 828 GYS-QHYASNTSHHPNR-RYHPQYDRNSSGEHPTHLY 862
GY+ QH+ H R R + + G +P H Y
Sbjct: 984 GYNGQHHHQQGGDHDRRGRGRGSHHHHDQGGNPRHRY 1020
Score = 39 (18.8 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 11/29 (37%), Positives = 11/29 (37%)
Query: 647 MNGYISPC---AGDPHPPVFRSPVASMED 672
MNG I PC P P F M D
Sbjct: 55 MNGIIHPCFHPEDRPSPTTFEEVFQCMFD 83
>TAIR|locus:2020073 [details] [associations]
symbol:XRN4 "exoribonuclease 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA;IGI;IMP] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA;IMP]
[GO:0009723 "response to ethylene stimulus" evidence=IMP]
[GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;IMP]
[GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid"
evidence=IMP] [GO:0009826 "unidimensional cell growth"
evidence=IMP] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=IMP] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=IMP] [GO:0010587 "miRNA catabolic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000003
"reproduction" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006325 "chromatin organization" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006487
"protein N-linked glycosylation" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0010638 "positive regulation of organelle
organization" evidence=RCA] [GO:0016049 "cell growth" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048589 "developmental growth"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009873
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
EMBL:AC005287 GO:GO:0009826 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0040029 GO:GO:0031087 GO:GO:0000291 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 KO:K12619 EMBL:AF286718 EMBL:AY064012
EMBL:AY091411 IPI:IPI00520526 PIR:G96586 RefSeq:NP_175851.1
UniGene:At.16935 ProteinModelPortal:Q9FQ04 SMR:Q9FQ04 STRING:Q9FQ04
PaxDb:Q9FQ04 PRIDE:Q9FQ04 EnsemblPlants:AT1G54490.1 GeneID:841891
KEGG:ath:AT1G54490 TAIR:At1g54490 InParanoid:Q9FQ04 OMA:SWEWYFP
PhylomeDB:Q9FQ04 ProtClustDB:CLSN2682416 Genevestigator:Q9FQ04
Uniprot:Q9FQ04
Length = 947
Score = 1019 (363.8 bits), Expect = 3.8e-204, Sum P(3) = 3.8e-204
Identities = 192/289 (66%), Positives = 227/289 (78%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
L K ++ DSNVITPGT FMA+LS+ALQYYI RLN++PGW +KVILSD+NVPGEGE
Sbjct: 147 LSAKEKAETCDSNVITPGTPFMAILSVALQYYIQSRLNHNPGWRYVKVILSDSNVPGEGE 206
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIMSY+RLQRNLPG+DPNTRHCLYGLDADLIML+LATHEVHFSILREV+ PGQQ+KCF
Sbjct: 207 HKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSLATHEVHFSILREVITYPGQQEKCF 266
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
+CGQ GH A++C GK+ G + D + + KK YQFL+IW LREYL YE IP+PPF
Sbjct: 267 VCGQTGHFASDCPGKS----GSNNAAAD-IPIHKKKYQFLNIWVLREYLQYELAIPDPPF 321
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
I+ E I+DDF+F+CFFVGNDFLPHMPTLEIREGAINLLM VY+KEF A+GGYLTD +
Sbjct: 322 MINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEV 381
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEP 324
L RVEHFIQAV ED+IFQKR R+ Q + ++ R +V P
Sbjct: 382 LLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQRSRRDPSEVPP 430
Score = 939 (335.6 bits), Expect = 3.8e-204, Sum P(3) = 3.8e-204
Identities = 187/363 (51%), Positives = 236/363 (65%)
Query: 413 RDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
RD S+ P +DK+KLGEPG+KERYY EKF+ PEE E+ ++D+VL+Y EGLCWV
Sbjct: 423 RDPSEV--PPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGLCWVC 480
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALP 532
YYY+GVCSWQWFYPYHYAPFASDLK+L I+F +G PFKPF+QL+G P+ASS+ALP
Sbjct: 481 RYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASSNALP 540
Query: 533 EHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTE 592
YRKLMTDP+SPI FYP DFE+DMNGKR++WQGIAKLPFI+E LL +K+E TLT
Sbjct: 541 GEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTV 600
Query: 593 EEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYIS 652
EE +RNS+M D+L+V +HPL I + + E + ++P S GMNG++
Sbjct: 601 EEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWM--IDPNSSQGMNGFLW 658
Query: 653 PCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLK 712
+ SPV + I N+ L Y P H H++ PP G I P KI+ D+K
Sbjct: 659 FSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIK 718
Query: 713 PAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK---------VDR 762
P P LWHED S RR R G I+G LGEAAHRL+ N+L +MK +D
Sbjct: 719 PFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL-NMKSSTGAASGLIDP 777
Query: 763 NGY 765
NGY
Sbjct: 778 NGY 780
Score = 56 (24.8 bits), Expect = 3.8e-204, Sum P(3) = 3.8e-204
Identities = 25/83 (30%), Positives = 33/83 (39%)
Query: 815 QSSISAAQPPYD-GGYSQHYASNTSHHPNRR--------YHPQYDRNSSGEHPTHLYNPS 865
+SS AA D GY ++ N S+ R Y YD +SS + + +
Sbjct: 765 KSSTGAASGLIDPNGYYRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQ 824
Query: 866 GIHQNGGPRYPPRPMGSTSSGAN 888
G NG PRYP GS N
Sbjct: 825 GTFNNG-PRYPYPSNGSQDYNRN 846
Score = 41 (19.5 bits), Expect = 4.5e-105, Sum P(2) = 4.5e-105
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 337 FHGSRLASGPSPSPYQQ------SECVGRLDNG-KGTSGRPHKVPRLSSGA 380
+ G P PSPY++ S G+ +N +GT + P S+G+
Sbjct: 790 YGGVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGS 840
Score = 38 (18.4 bits), Expect = 3.0e-202, Sum P(3) = 3.0e-202
Identities = 17/56 (30%), Positives = 21/56 (37%)
Query: 858 PTHLY-NPSGIHQNGG---PRYP-PRPMGSTSSGANLYPPQGGYSGYQSPAAGSFN 908
P Y N G + GG PR P P P + Y Y Y + G+FN
Sbjct: 777 PNGYYRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYY----YGKYNNSTQGTFN 828
>UNIPROTKB|F1MKX7 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:DAAA02035814 EMBL:DAAA02035815 IPI:IPI00699133
RefSeq:NP_001179401.1 UniGene:Bt.8587 Ensembl:ENSBTAT00000015019
GeneID:517417 KEGG:bta:517417 NextBio:20872434 Uniprot:F1MKX7
Length = 951
Score = 765 (274.4 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 160/339 (47%), Positives = 211/339 (62%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCG 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + F+ + LREYL+ E + + PF
Sbjct: 265 LCNQFGHDVKDCEGLPREKKGKHDELADSLPCAEGEFIFIRLSVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 325 TFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGD-DVEP--LAQPDSLV 332
+L+RV+ + AVG ED IF+KR R K ++ + +R P + P +L
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKEKRKRMKRDQPSFSPGGILTPHALG 444
Query: 333 PVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
S GS++AS P + Y+ R+ N S P+
Sbjct: 445 SRSS-PGSQVASNPRQAAYEM-----RMQNNLSPSVSPN 477
Score = 623 (224.4 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 139/318 (43%), Positives = 187/318 (58%)
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 474
K+D +S+ ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ Y
Sbjct: 495 KADDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVLRY 552
Query: 475 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPE 533
YY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP
Sbjct: 553 YYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPP 612
Query: 534 HYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEE 593
+RKLM+DP+S I DFYP DF +D+NGKRY+WQG+A LPF+DE RL ++++ LT E
Sbjct: 613 SWRKLMSDPDSSIIDFYPEDFAIDLNGKRYAWQGVALLPFVDERRLRAALEEVYPDLTPE 672
Query: 594 EARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISP 653
E RRNS+ D+LFV HPL I L + E V+V PEL G+ G S
Sbjct: 673 ETRRNSLGGDVLFVGKHHPLHDFILEL----YKTGSTESVDVP----PELCHGIQGKFSL 724
Query: 654 CAGDPHP-PVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLEDL 711
P V SP+ ++D+ N V+ +K P A ++ + V+ P
Sbjct: 725 DEEAVLPNQVVCSPIPVLKDLTHNAVISINFKDPQFAEDYIFK---AVMLPGA------R 775
Query: 712 KPAPVL----WHEDSGRR 725
KPAPVL W + S R
Sbjct: 776 KPAPVLKPSDWEKSSNGR 793
Score = 52 (23.4 bits), Expect = 1.3e-143, Sum P(3) = 1.3e-143
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 843 RRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYSG 898
R++ PQ N P HL +P+ G PR T +N PP + G
Sbjct: 793 RQWKPQLGFNRD-RRPVHL-DPAAFRALG--HVMPRGSSGTGVYSNAAPPPAAFQG 844
Score = 39 (18.8 bits), Expect = 2.5e-61, Sum P(3) = 2.5e-61
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
>UNIPROTKB|Q5ZIP4 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0016049 "cell
growth" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA]
[GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0016049 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 GO:GO:0008409 GO:GO:0000738
GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098
KO:K12619 EMBL:AJ720740 IPI:IPI00598321 RefSeq:NP_001026204.1
UniGene:Gga.8002 STRING:Q5ZIP4 PRIDE:Q5ZIP4
Ensembl:ENSGALT00000013637 GeneID:421236 KEGG:gga:421236 CTD:22803
HOVERGEN:HBG036677 InParanoid:Q5ZIP4 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
NextBio:20824031 Uniprot:Q5ZIP4
Length = 949
Score = 758 (271.9 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 153/313 (48%), Positives = 199/313 (63%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLN+DPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIADRLNSDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE HF+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPHFTIIREE-FKPNKPKPCA 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +C+G + K G+ D+ D + ++ + F+ + LREYL+ E + + PF
Sbjct: 265 LCNQMGHEVKDCQGLPREKQGKHDQFADSLPASEQEFIFIRLCVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D E VDD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 325 TFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGFV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVS 335
+L+RV+ + AVG ED IF+KR R K +K + +R P S +P
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKEKKKRMKRD-------HP-SFIPGG 436
Query: 336 RFHGSRLASGPSP 348
+F L + SP
Sbjct: 437 QFSPQALGNRSSP 449
Score = 617 (222.3 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 125/274 (45%), Positives = 167/274 (60%)
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 474
KS+ +S+ ED ++L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ Y
Sbjct: 494 KSEDSDSEPEPEDNIRLWESGWKQRYYKNKFDVDASDEK--FRRKVVQSYVEGLCWVLRY 551
Query: 475 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGH-PFKPFNQLLGVFPSASSHALPE 533
YY+G SW W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP
Sbjct: 552 YYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPP 611
Query: 534 HYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEE 593
+RKLMTDP S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT E
Sbjct: 612 TWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPE 671
Query: 594 EARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISP 653
E RRNS+ D+LFV HPL I +Q K K V + PEL G+ G ++P
Sbjct: 672 ENRRNSLGGDVLFVGKHHPLCDFIV------EQYKSKNTEPVD--MPPELCYGIQGKLTP 723
Query: 654 CAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLP 686
P SPV + D+ N + +K P
Sbjct: 724 NENAVLPDKTVESPVPMLRDLTQNSAVSISFKDP 757
Score = 57 (25.1 bits), Expect = 9.1e-143, Sum P(3) = 9.1e-143
Identities = 18/55 (32%), Positives = 22/55 (40%)
Query: 858 PTHLYNPSGIHQN-GGPR-YPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQW 910
P P G +Q GGP YP RP G Y P Y P +G ++ W
Sbjct: 897 PAQSQYPPGQYQGLGGPMSYPQRPEDRMDRGRQAYGPGRPY--LLPPPSGRYS-W 948
Score = 41 (19.5 bits), Expect = 4.4e-61, Sum P(3) = 4.4e-61
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DRIF + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
>MGI|MGI:894687 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10090 "Mus
musculus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0006310 "DNA recombination" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007017 "microtubule-based process" evidence=TAS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISO] [GO:0016049 "cell growth" evidence=IGI]
[GO:0016070 "RNA metabolic process" evidence=IGI] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Reactome:REACT_93132 InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 MGI:MGI:894687
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0016049
GO:GO:0008270 GO:GO:0006281 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006310 GO:GO:0016070 GO:GO:0007017
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z ChiTaRS:XRN2 EMBL:D38517
EMBL:AK004800 EMBL:AK031247 EMBL:AK053643 EMBL:AK133654
EMBL:AK167019 EMBL:AK168037 EMBL:BC004028 EMBL:BC054743
IPI:IPI00120046 IPI:IPI00283057 PIR:I49635 RefSeq:NP_036047.2
UniGene:Mm.3065 ProteinModelPortal:Q9DBR1 SMR:Q9DBR1 IntAct:Q9DBR1
STRING:Q9DBR1 PhosphoSite:Q9DBR1 PaxDb:Q9DBR1 PRIDE:Q9DBR1
Ensembl:ENSMUST00000028921 GeneID:24128 KEGG:mmu:24128
UCSC:uc008msq.1 InParanoid:Q9DBR1 NextBio:304163 Bgee:Q9DBR1
CleanEx:MM_XRN2 Genevestigator:Q9DBR1 GermOnline:ENSMUSG00000027433
Uniprot:Q9DBR1
Length = 951
Score = 765 (274.4 bits), Expect = 1.7e-141, Sum P(3) = 1.7e-141
Identities = 168/369 (45%), Positives = 227/369 (61%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCA 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + FL + LREYL+ E + + PF
Sbjct: 265 LCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 325 PFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPAFTPSGILTPH 441
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEA 389
SR G ++AS P + Y+ R+ S P+ S + +G +A
Sbjct: 442 ALGSRNSPGCQVASNPRQAAYEM-----RMQRNSSPSISPNTSFASDGSPSPLGGIKRKA 496
Query: 390 ENSFETDPQ 398
E+S +++P+
Sbjct: 497 EDS-DSEPE 504
Score = 608 (219.1 bits), Expect = 1.7e-141, Sum P(3) = 1.7e-141
Identities = 140/317 (44%), Positives = 185/317 (58%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPTWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE RRNS+ D+LFV HPL I L Q E V+V PEL G+ G
Sbjct: 671 PEENRRNSLGGDVLFVGKLHPLRDFILEL----YQTGSTEPVDVP----PELCHGIQGTF 722
Query: 652 S--PCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQL 708
S A P V SPV + D+ N + +K P A +V + + P
Sbjct: 723 SLDEEAILPDQTVC-SPVPMLRDLTQNTAVSINFKDPQFAEDYVFK---AAMLPGARKPA 778
Query: 709 EDLKPAPVLWHEDSGRR 725
LKP W + S R
Sbjct: 779 TVLKPGD--WEKSSNGR 793
Score = 47 (21.6 bits), Expect = 1.7e-141, Sum P(3) = 1.7e-141
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 862 YNPSGIHQNGGPR-YPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQW 910
+ P+ GGP YPPR G YP +G Y P W
Sbjct: 904 FQPNQYQMLGGPGGYPPR-RDDHRGGRQGYPREG--RKYPLPPPSGRYSW 950
Score = 39 (18.8 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
>ZFIN|ZDB-GENE-040426-2874 [details] [associations]
symbol:xrn2 "5'-3' exoribonuclease 2" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 SMART:SM00343 ZFIN:ZDB-GENE-040426-2874
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z EMBL:BX005124 EMBL:CT573061
IPI:IPI00835014 RefSeq:NP_001001944.2 UniGene:Dr.10637
Ensembl:ENSDART00000100246 GeneID:321940 KEGG:dre:321940
NextBio:20807592 Uniprot:A5WVY7
Length = 952
Score = 760 (272.6 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 151/286 (52%), Positives = 190/286 (66%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YY+ RL NDPGW I V LSDA+VPGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVADRLTNDPGWRNITVFLSDASVPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRGQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPRPCA 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +C+G + K GE DE D + V ++ + F+ + LREYL+ E + + PF
Sbjct: 265 LCSQMGHEIKDCQGLPREKQGEHDEFADTIPVSEQEFIFIRLAVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
E VDD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 325 PFSFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVGIYKDVVHKTGGYLTENGFV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRAR----LHQRHAERIKREKAQAR 317
+L RVE +QAVG ED IF+KR +R ++ KR KA+ R
Sbjct: 385 NLERVELIMQAVGVAEDNIFKKRKEDDESFKRRMKDKKKRMKAEQR 430
Score = 608 (219.1 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 134/316 (42%), Positives = 182/316 (57%)
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 474
K+D +S+ ED V+L E GWK+RYY+ KF+ ++ E RK VV Y EGLCWV+ Y
Sbjct: 503 KADDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATDD--EFRKKVVQSYVEGLCWVLRY 560
Query: 475 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPE 533
YY+G SW+W++P+HYAPFASD KD+ FE G PFKP QL+GVFP+AS + LP
Sbjct: 561 YYQGCASWKWYFPFHYAPFASDFKDIKGMFSDFEKGTKPFKPLEQLMGVFPAASGNFLPT 620
Query: 534 HYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEE 593
+R LM+DP S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL + ++ + LT E
Sbjct: 621 TWRALMSDPESSIIDFYPDDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEVYNDLTPE 680
Query: 594 EARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISP 653
E RRNS+ +D++FV SH L I L + + E G+ G ++
Sbjct: 681 EVRRNSLGSDVMFVGRSHALCDFIQEL--------YRAESHTATEIPAEFCHGIQGILN- 731
Query: 654 CAGDPHPP--VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLED 710
DP P + SP+ + DI N + +K P A V + VI P + +
Sbjct: 732 LDEDPILPDKLVESPIPVLRDISSNCAIGIKFKDPQYADGFVFK---AVILPGAKIPNKV 788
Query: 711 LKPAPVLWHEDSGRRP 726
LKP W E S R P
Sbjct: 789 LKPGD--W-EQSNRGP 801
Score = 49 (22.3 bits), Expect = 3.5e-141, Sum P(3) = 3.5e-141
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 864 PSGIHQNGGPRYPPRPMGSTSSGANLYPPQGG-YSGYQS 901
PS H+ GG Y P + N PPQ YS QS
Sbjct: 843 PSDAHRRGGA-YSSAPPPTNYHQGNYRPPQRDHYSQSQS 880
Score = 41 (19.5 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 338 HGSRLASGPSPSPYQQSECVGRLD-----NGKG-TSGRPHKVPRLS 377
HG A S YQQ++ GR D N +G SGR + +P S
Sbjct: 901 HGWDRAMQNQGSSYQQNQQRGRGDWRPQQNQQGFNSGRGYGLPPAS 946
Score = 38 (18.4 bits), Expect = 1.7e-58, Sum P(3) = 1.7e-58
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF 295
KP+ + + + A+ Y DR+F
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLF 89
>UNIPROTKB|E2RMS9 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
KO:K12619 CTD:22803 OMA:RKRMKRD EMBL:AAEX03013750
RefSeq:XP_534324.2 Ensembl:ENSCAFT00000008370 GeneID:477133
KEGG:cfa:477133 NextBio:20852667 Uniprot:E2RMS9
Length = 950
Score = 777 (278.6 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 171/369 (46%), Positives = 229/369 (62%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCG 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + FL + LREYL+ E + + PF
Sbjct: 265 LCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 325 TFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPAFSPGGILTPH 441
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEA 389
SR GS++AS P + Y+ R+ N S P+ S + IG +A
Sbjct: 442 ALGSRNSPGSQVASNPRQAAYEM-----RMQNNSSPSISPNTSFTSDGSPSPIGGIKRKA 496
Query: 390 ENSFETDPQ 398
E+S +++P+
Sbjct: 497 EDS-DSEPE 504
Score = 614 (221.2 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 137/316 (43%), Positives = 185/316 (58%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE +RNS+ D+LFV HPL I L Q E V+V PEL G+ G
Sbjct: 671 PEETKRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PELCHGIQGKF 722
Query: 652 SPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLE 709
S P + SPV + D+ N + +K P A ++ + V+ P
Sbjct: 723 SLDEEAVLPDQIVCSPVPMLRDLTQNAAISINFKDPQFAEDYIFK---AVMLPGARKPTP 779
Query: 710 DLKPAPVLWHEDSGRR 725
LKP+ W + S R
Sbjct: 780 VLKPSD--WEKSSNGR 793
Score = 39 (18.8 bits), Expect = 8.4e-58, Sum P(2) = 8.4e-58
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
>UNIPROTKB|F1PB11 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 EMBL:AAEX03013750
Ensembl:ENSCAFT00000008379 Uniprot:F1PB11
Length = 948
Score = 777 (278.6 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 171/369 (46%), Positives = 229/369 (62%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 144 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 203
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 204 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCG 262
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + FL + LREYL+ E + + PF
Sbjct: 263 LCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPF 322
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 323 TFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV 382
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 383 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPAFSPGGILTPH 439
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEA 389
SR GS++AS P + Y+ R+ N S P+ S + IG +A
Sbjct: 440 ALGSRNSPGSQVASNPRQAAYEM-----RMQNNSSPSISPNTSFTSDGSPSPIGGIKRKA 494
Query: 390 ENSFETDPQ 398
E+S +++P+
Sbjct: 495 EDS-DSEPE 502
Score = 614 (221.2 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 137/316 (43%), Positives = 185/316 (58%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 491 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 548
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 549 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 608
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 609 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 668
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE +RNS+ D+LFV HPL I L Q E V+V PEL G+ G
Sbjct: 669 PEETKRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PELCHGIQGKF 720
Query: 652 SPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLE 709
S P + SPV + D+ N + +K P A ++ + V+ P
Sbjct: 721 SLDEEAVLPDQIVCSPVPMLRDLTQNAAISINFKDPQFAEDYIFK---AVMLPGARKPTP 777
Query: 710 DLKPAPVLWHEDSGRR 725
LKP+ W + S R
Sbjct: 778 VLKPSD--WEKSSNGR 791
Score = 39 (18.8 bits), Expect = 8.1e-58, Sum P(2) = 8.1e-58
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 66 KPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 116
>UNIPROTKB|B4DZC3 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016235
GO:GO:0016070 EMBL:AL158013 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOVERGEN:HBG036677 EMBL:AL117332 UniGene:Hs.255932
HGNC:HGNC:12836 ChiTaRS:XRN2 EMBL:AK302846 IPI:IPI01012839
SMR:B4DZC3 STRING:B4DZC3 Ensembl:ENST00000539513 Uniprot:B4DZC3
Length = 896
Score = 769 (275.8 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 169/369 (45%), Positives = 228/369 (61%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 92 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 151
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 152 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCG 210
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + FL + LREYL+ E + + PF
Sbjct: 211 LCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPF 270
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIRE AI+ L+ +YK GGYLT+
Sbjct: 271 TFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYV 330
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 331 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPAFTPSGILTPH 387
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEA 389
SR GS++AS P + Y+ R+ N S P+ S + +G +A
Sbjct: 388 ALGSRNSPGSQVASNPRQAAYEM-----RMQNNSSPSISPNTSFTSDGSPSPLGGIKRKA 442
Query: 390 ENSFETDPQ 398
E+S +++P+
Sbjct: 443 EDS-DSEPE 450
Score = 622 (224.0 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 140/316 (44%), Positives = 186/316 (58%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 439 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 496
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 497 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 556
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 557 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 616
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE RRNS+ D+LFV HPL I L Q E VEV PEL G+ G
Sbjct: 617 PEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVEVP----PELCHGIQGKF 668
Query: 652 SPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLE 709
S P + SPV + D+ N V+ +K P A ++ + V+ P
Sbjct: 669 SLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFK---AVMLPGARKPAA 725
Query: 710 DLKPAPVLWHEDSGRR 725
LKP+ W + S R
Sbjct: 726 VLKPSD--WEKSSNGR 739
Score = 39 (18.8 bits), Expect = 1.4e-59, Sum P(2) = 1.4e-59
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 14 KPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRR 64
Score = 38 (18.4 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 538 LMTDPNSPISDFYPTDFEVDMNGKRYSWQ 566
++ P + P+D+E NG+++ Q
Sbjct: 716 MLPGARKPAAVLKPSDWEKSSNGRQWKPQ 744
>UNIPROTKB|Q9H0D6 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0016070 "RNA metabolic
process" evidence=ISS] [GO:0016049 "cell growth" evidence=ISS]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=IEP] [GO:0004518 "nuclease
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
Reactome:REACT_17015 InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0016049 GO:GO:0008270 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006401 GO:GO:0006396 GO:GO:0016235
GO:GO:0000738 GO:GO:0006353 EMBL:AL158013 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
EMBL:AF064257 EMBL:AF152169 EMBL:AY382900 EMBL:AL136841
EMBL:AL117332 EMBL:AK000084 EMBL:BC006417 IPI:IPI00100151
IPI:IPI00788157 RefSeq:NP_036387.2 UniGene:Hs.255932
ProteinModelPortal:Q9H0D6 SMR:Q9H0D6 IntAct:Q9H0D6
MINT:MINT-3065664 STRING:Q9H0D6 PhosphoSite:Q9H0D6 DMDM:30173484
SWISS-2DPAGE:Q9H0D6 PaxDb:Q9H0D6 PeptideAtlas:Q9H0D6 PRIDE:Q9H0D6
DNASU:22803 Ensembl:ENST00000377191 Ensembl:ENST00000430571
GeneID:22803 KEGG:hsa:22803 UCSC:uc002wsf.1 GeneCards:GC20P021283
HGNC:HGNC:12836 HPA:HPA047118 MIM:608851 neXtProt:NX_Q9H0D6
PharmGKB:PA37427 InParanoid:Q9H0D6 PhylomeDB:Q9H0D6 ChiTaRS:XRN2
GenomeRNAi:22803 NextBio:43160 PMAP-CutDB:Q9H0D6
ArrayExpress:Q9H0D6 Bgee:Q9H0D6 CleanEx:HS_XRN2
Genevestigator:Q9H0D6 GermOnline:ENSG00000088930 Uniprot:Q9H0D6
Length = 950
Score = 769 (275.8 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 169/369 (45%), Positives = 228/369 (61%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCG 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + FL + LREYL+ E + + PF
Sbjct: 265 LCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIRE AI+ L+ +YK GGYLT+
Sbjct: 325 TFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPAFTPSGILTPH 441
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEA 389
SR GS++AS P + Y+ R+ N S P+ S + +G +A
Sbjct: 442 ALGSRNSPGSQVASNPRQAAYEM-----RMQNNSSPSISPNTSFTSDGSPSPLGGIKRKA 496
Query: 390 ENSFETDPQ 398
E+S +++P+
Sbjct: 497 EDS-DSEPE 504
Score = 622 (224.0 bits), Expect = 5.0e-140, Sum P(2) = 5.0e-140
Identities = 140/316 (44%), Positives = 186/316 (58%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE RRNS+ D+LFV HPL I L Q E VEV PEL G+ G
Sbjct: 671 PEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVEVP----PELCHGIQGKF 722
Query: 652 SPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLE 709
S P + SPV + D+ N V+ +K P A ++ + V+ P
Sbjct: 723 SLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFK---AVMLPGARKPAA 779
Query: 710 DLKPAPVLWHEDSGRR 725
LKP+ W + S R
Sbjct: 780 VLKPSD--WEKSSNGR 793
Score = 39 (18.8 bits), Expect = 5.6e-59, Sum P(2) = 5.6e-59
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
Score = 38 (18.4 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 538 LMTDPNSPISDFYPTDFEVDMNGKRYSWQ 566
++ P + P+D+E NG+++ Q
Sbjct: 770 MLPGARKPAAVLKPSDWEKSSNGRQWKPQ 798
>UNIPROTKB|F1SAU5 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:CU633728 EMBL:CU459108 RefSeq:XP_003134355.2 UniGene:Ssc.7627
Ensembl:ENSSSCT00000007781 GeneID:100517201 KEGG:ssc:100517201
Uniprot:F1SAU5
Length = 950
Score = 773 (277.2 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 171/370 (46%), Positives = 230/370 (62%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCG 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + FL + LREYL+ E + + PF
Sbjct: 265 LCNQFGHEVKDCEGLPREKKGKHDELADSLPSAEGEFIFLRLSVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 325 TFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPSFSPGGILTPH 441
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATI--GAAIVE 388
SR GS++AS P + Y+ R+ N S P+ +S G+ G +
Sbjct: 442 ALGSRNSPGSQVASNPRQAAYEM-----RMQNNSSPSVSPN-TSFISDGSPSPRGGIKRK 495
Query: 389 AENSFETDPQ 398
AE+S +++P+
Sbjct: 496 AEDS-DSEPE 504
Score = 614 (221.2 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 141/320 (44%), Positives = 187/320 (58%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE RRNS+ D+LFV HPL + L + E V+V PEL G+ G
Sbjct: 671 PEETRRNSLGGDVLFVGKHHPLHDFVLEL----YKTGSTESVDVP----PELCHGIQGKF 722
Query: 652 SPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLE 709
S P V SPV + D+ N + +K P A +V + V+ P
Sbjct: 723 SLDEEAILPDQVVCSPVPMLRDLTQNGTISINFKDPQFAEDYVFK---AVMLPGA----- 774
Query: 710 DLKPAPVL----WHEDSGRR 725
KPAPVL W + S R
Sbjct: 775 -RKPAPVLKPGDWEKSSNGR 793
Score = 39 (18.8 bits), Expect = 8.4e-58, Sum P(2) = 8.4e-58
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
>UNIPROTKB|Q5R4L5 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9601 "Pongo
abelii" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 EMBL:CR861231 RefSeq:NP_001126942.1
UniGene:Pab.18504 PRIDE:Q5R4L5 GeneID:100173960 KEGG:pon:100173960
InParanoid:Q5R4L5 Uniprot:Q5R4L5
Length = 950
Score = 764 (274.0 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 173/397 (43%), Positives = 235/397 (59%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCG 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K + DE D + + + FL + LREYL+ E + + PF
Sbjct: 265 LCNQFGHEVKDCEGLLREKKVKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIRE AI+ L+ +YK GGYLT+
Sbjct: 325 TFDVERSIDDWVFMCFFVGNDFLPHLPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPAFTPSGILTPH 441
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEA 389
SR GS++AS P + Y+ R+ N S P+ S + IG +A
Sbjct: 442 ALGSRNSPGSQVASNPRQAAYEM-----RMQNNSSPSISPNTSFTSDGSPSPIGGIKRKA 496
Query: 390 ENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEE 426
E+S +++P+ R + F++D +E
Sbjct: 497 EDS-DSEPEPEDNVRLWEAGWKQRYYKNKFDADAADE 532
Score = 623 (224.4 bits), Expect = 1.3e-139, Sum P(2) = 1.3e-139
Identities = 140/316 (44%), Positives = 187/316 (59%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+A +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDADAADEK--FRRKVVQSYVEGLCWVL 550
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE RRNS+ D+LFV HPL I L Q E V+V PEL G+ G
Sbjct: 671 PEETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PELCHGIQGKF 722
Query: 652 SPCAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLE 709
S P + SPV + D+ N V+ +K P A ++ + V+ P
Sbjct: 723 SLDEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFK---AVMLPGARKPAA 779
Query: 710 DLKPAPVLWHEDSGRR 725
LKP+ W + S R
Sbjct: 780 VLKPSD--WEKSSNGR 793
Score = 39 (18.8 bits), Expect = 4.1e-59, Sum P(2) = 4.1e-59
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
Score = 38 (18.4 bits), Expect = 7.5e-78, Sum P(2) = 7.5e-78
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 538 LMTDPNSPISDFYPTDFEVDMNGKRYSWQ 566
++ P + P+D+E NG+++ Q
Sbjct: 770 MLPGARKPAAVLKPSDWEKSSNGRQWKPQ 798
>RGD|1310218 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10116 "Rattus
norvegicus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO] [GO:0016049 "cell growth"
evidence=IEA;ISO] [GO:0016070 "RNA metabolic process"
evidence=IEA;ISO] [GO:0016235 "aggresome" evidence=IEA;ISO]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 RGD:1310218
GO:GO:0005730 GO:GO:0016049 GO:GO:0008270 GO:GO:0003676
GO:GO:0016070 GO:GO:0000738 EMBL:CH474026 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
OMA:RKRMKRD OrthoDB:EOG4M0F0Z IPI:IPI00357938 UniGene:Rn.64021
Ensembl:ENSRNOT00000016351 Uniprot:D4A914
Length = 951
Score = 768 (275.4 bits), Expect = 1.2e-138, Sum P(2) = 1.2e-138
Identities = 168/369 (45%), Positives = 228/369 (61%)
Query: 36 LPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGE 95
LPP+ + FDSN ITPGTEFM L+ L+YYI RLNNDPGW+ + VILSDA+ PGEGE
Sbjct: 146 LPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGE 205
Query: 96 HKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCF 155
HKIM Y+R QR P +DPNT HCL G DADLIML LATHE +F+I+RE F P + C
Sbjct: 206 HKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGLATHEPNFTIIREE-FKPNKPKPCA 264
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPF 215
LC Q GH +CEG + K G+ DE D + + + FL + LREYL+ E + + PF
Sbjct: 265 LCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGEFIFLRLNVLREYLERELTMASLPF 324
Query: 216 EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKP 275
D+E +DD++FMCFFVGNDFLPH+P+LEIREGAI+ L+ +YK GGYLT+
Sbjct: 325 PFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYV 384
Query: 276 SLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDS-LVPV 334
+L+RV+ + AVG ED IF+KR + + R ++EK + + D +P P L P
Sbjct: 385 NLQRVQMIMLAVGEVEDSIFKKR-KDDEDSFRRRQKEKRKRMKRD--QPAFTPSGILTPY 441
Query: 335 ---SRFH-GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEA 389
SR G ++AS P + Y+ R+ + S P+ S + +G +A
Sbjct: 442 ALGSRNSPGCQVASNPRQAAYEM-----RMQSNSSPSISPNTSFASDGSPSPLGGLKRKA 496
Query: 390 ENSFETDPQ 398
E+S +++P+
Sbjct: 497 EDS-DSEPE 504
Score = 610 (219.8 bits), Expect = 1.2e-138, Sum P(2) = 1.2e-138
Identities = 140/317 (44%), Positives = 186/317 (58%)
Query: 415 KSDAFNSDN-PE-EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
K A +SD+ PE ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+
Sbjct: 493 KRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVL 550
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHAL 531
YYY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + L
Sbjct: 551 RYYYQGCASWKWYYPFHYAPFASDFEGIADMPSEFEKGTKPFKPLEQLMGVFPAASGNFL 610
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P +RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT
Sbjct: 611 PPTWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLT 670
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
EE RRNS+ +D+LFV HPL I L Q E V+V PEL G+ G
Sbjct: 671 PEENRRNSLGSDVLFVGKVHPLHDFILEL----YQTGSTEPVDVP----PELCHGIQGKF 722
Query: 652 S--PCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQL 708
S A P V SPV + D+ N + +K P A +V + ++ P
Sbjct: 723 SLDEEAILPDQTVC-SPVPMLRDLTQNTAISINFKDPQFAEDYVFK---AIMLPGARKPA 778
Query: 709 EDLKPAPVLWHEDSGRR 725
LKP W + S R
Sbjct: 779 AVLKPGD--WEKSSNGR 793
Score = 39 (18.8 bits), Expect = 3.2e-57, Sum P(2) = 3.2e-57
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 274 KPSLRRVEHFIQAVGSYEDRIF---QKRARLHQRH---AERIKREKAQARR 318
KP+ + + + A+ Y DR+F + R L+ A R K + ++RR
Sbjct: 68 KPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR 118
>UNIPROTKB|Q60SG7 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6238
"Caenorhabditis briggsae" [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 EMBL:HE600928 GO:GO:0008409
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 STRING:Q60SG7 PRIDE:Q60SG7
EnsemblMetazoa:CBG20900 WormBase:CBG20900 HOGENOM:HOG000205514
Uniprot:Q60SG7
Length = 976
Score = 1257 (447.5 bits), Expect = 5.3e-132, Sum P(2) = 5.3e-132
Identities = 296/718 (41%), Positives = 402/718 (55%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGT FMA L+ AL+YYIH R+ NDP W I++ILSDANVPGEGEHKIM Y+R
Sbjct: 158 FDSNCITPGTPFMARLADALRYYIHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRK 217
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLA 164
QR P +DPNT HCL G DADLIML +ATHE +F+I+RE F P Q C LCGQ GH
Sbjct: 218 QRGNPAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE-FVPNQPRACELCGQYGHEL 276
Query: 165 ANCEGKAKRKAGEFDEKGDEVVVPK---KPYQFLHIWTLREYLDYEFRIPNPPFEIDLEC 221
C G A + GDE P+ K + FL I LREYL+ E +PN PF+ +LE
Sbjct: 277 KECRG-----AENDTDLGDEYCKPEQREKNFIFLRIPVLREYLEKEMAMPNLPFQFNLER 331
Query: 222 IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 281
+DD++F+CFFVGNDFLPH+P+LEIREGAI+ L+ +YK+ + GYLT P L RVE
Sbjct: 332 ALDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVE 391
Query: 282 HFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQAR-----RGDDVEPLAQPDSLVPVSR 336
++ +G ED IF++R + +R E K +KA+ + RG QP + VP
Sbjct: 392 MIMRGLGKVEDEIFKRRQQDEERFKENQKNKKARMQQYGRGRGGRGRGRGQP-AYVPS-- 448
Query: 337 FHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETD 396
HG LA P +P S G + R + ++ A +
Sbjct: 449 -HGI-LA--PMSAPMHHS---GESTRQMASDARQAAMQFNATNDANAQAAANLKALLNVK 501
Query: 397 PQXXXXXXXXXXXXXXRDKSDAFNSDNPEE--DKVKLGEPGWKERYYEEKFNAKTPEERE 454
+ + + +D EE D ++L E GWKERYY KF+ + +
Sbjct: 502 GEQSPAEVAAQESRKRKAEQPIIITDEDEEPKDDIRLYESGWKERYYRAKFDVGSDDV-- 559
Query: 455 ETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPF 513
+ R V Y EGLCWV+ YYY+G SW W++PYHYAPFASD + + +F F PF
Sbjct: 560 DFRHRVAWAYVEGLCWVLRYYYQGCSSWDWYFPYHYAPFASDFETVGEFKPDFTRPTKPF 619
Query: 514 KPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPF 573
P QL+ VFP+AS LP ++KLMT+ SPI D YP DF +D+NGK+Y+WQG+A LPF
Sbjct: 620 NPLEQLMSVFPAASKQHLPVEWQKLMTEDESPIIDLYPADFRIDLNGKKYAWQGVALLPF 679
Query: 574 IDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERV 633
+DE RLL+ +K + TLT+EE RN+ + +F+ +H A + E K + V
Sbjct: 680 VDEQRLLETLKSVYPTLTDEEKYRNTRGPNRIFIGRNHKSFAFFQQVAES----KSNDLV 735
Query: 634 EVKERLNPELSDGMNGYIS--PCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAH 689
+ L+P L +G++G IS A P P F SPV+ E D+ N +C +Y+ P+
Sbjct: 736 D----LDPSLLNGVSGKISYDSTATAPGLP-FPSPVSHEECQDLPTNCGICVLYEDPEYP 790
Query: 690 KHVTRPPAGVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENG--RHNPHG--TISGRQ 742
+ P + K+ + L+P W+E GR G R+ P G +SG++
Sbjct: 791 ANYVFPAVRLDGAKEAEKT--LRPED--WNERRDGRFNPTIGFNRNAPRGGLDLSGQR 844
Score = 58 (25.5 bits), Expect = 5.3e-132, Sum P(2) = 5.3e-132
Identities = 57/215 (26%), Positives = 74/215 (34%)
Query: 696 PAGVIFPKKIVQLEDLKPAP-VLWHEDSGRRPHENGRHNPHGTISGRQ------LGEAAH 748
PA +FP V+L+ K A L ED R +GR NP TI + L +
Sbjct: 790 PANYVFPA--VRLDGAKEAEKTLRPEDWNER--RDGRFNP--TIGFNRNAPRGGLDLSGQ 843
Query: 749 RLVANSLQHMKVDRNGYGDRMHGXXXXXXXXXXXXXXXXXQEYGVYDQGYNRFSQPRTDS 808
R + + ++ DR G D G + G Y GYN S+P
Sbjct: 844 RHINHHVRGAMYDRQGGNDNYRGGYRGGYQGGYDDRRGG-RGGGGYRGGYND-SRPDFGR 901
Query: 809 YPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQ--YDRNSSGEHPTHLYNPSG 866
AG +GG QHY + + R H Q Y N G Y+ G
Sbjct: 902 NYAGR------------EGGGPQHYHEHQPGGGHGRPHDQQPYQDNRRGGG----YHRGG 945
Query: 867 IHQNGGPRYPPRPMGSTSSGANLYPPQGGYSGYQS 901
+ GP RP G GGY G S
Sbjct: 946 --RGNGPTGYQRPPYRGGRGRG----GGGYQGNSS 974
>FB|FBgn0031868 [details] [associations]
symbol:Rat1 species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 GO:GO:0005634 EMBL:AE014134
GO:GO:0022008 GO:GO:0006355 GO:GO:0046872 GO:GO:0006397
GO:GO:0003676 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 OMA:RKRMKRD EMBL:BT021334
EMBL:BT056259 RefSeq:NP_609082.1 UniGene:Dm.8576
ProteinModelPortal:Q9VM71 SMR:Q9VM71 MINT:MINT-855535 STRING:Q9VM71
PaxDb:Q9VM71 EnsemblMetazoa:FBtr0079345 EnsemblMetazoa:FBtr0332324
GeneID:33964 KEGG:dme:Dmel_CG10354 UCSC:CG10354-RA CTD:33964
FlyBase:FBgn0031868 InParanoid:Q9VM71 OrthoDB:EOG41VHHV
PhylomeDB:Q9VM71 GenomeRNAi:33964 NextBio:786169 Bgee:Q9VM71
GermOnline:CG10354 Uniprot:Q9VM71
Length = 908
Score = 694 (249.4 bits), Expect = 9.3e-129, Sum P(3) = 9.3e-129
Identities = 143/287 (49%), Positives = 181/287 (63%)
Query: 35 KLPP-KSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGE 93
KLPP K + FDSN ITPGT FM LS L Y++H R NN+P W+ IKVILSDANVPGE
Sbjct: 146 KLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHYFVHDRQNNNPAWKGIKVILSDANVPGE 205
Query: 94 GEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK 153
GEHKIM Y+R QR P +DPNT+H L G DADLIML LATHE +F+I+RE F P +
Sbjct: 206 GEHKIMDYIRKQRAQPDHDPNTQHVLCGADADLIMLGLATHEPNFTIIREE-FLPNKPRP 264
Query: 154 CFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNP 213
C +C GH C G + K D + + + F+ + LREYL +PN
Sbjct: 265 CDICNGFGHEMDKCVGLGATAPTSANFKPDVPIGAEVKFIFVRLSVLREYLKQTLEMPNL 324
Query: 214 PFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGS 273
PFE E +DD++FMCFFVGNDFLPH+P+LEIREGA++ L+ +YKK GYLTD
Sbjct: 325 PFEYSFERALDDWVFMCFFVGNDFLPHLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSG 384
Query: 274 KPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGD 320
+L RV+ + +G+ ED+IF+ R R ++ R K K Q R D
Sbjct: 385 DVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFKARDKARKRQERNQD 431
Score = 544 (196.6 bits), Expect = 9.3e-129, Sum P(3) = 9.3e-129
Identities = 116/280 (41%), Positives = 166/280 (59%)
Query: 416 SDAFNSDNPEE----DKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWV 471
SD N D+ +E D+V+L E G+K+RYYE KF+ P ++ R V L+Y GLCWV
Sbjct: 471 SDMANLDDEDEEENNDEVRLWEDGFKDRYYESKFDV-APGN-QQFRYAVALQYVRGLCWV 528
Query: 472 MHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHA 530
+ YYY+G SW W++PYHYAPFASD ++ + FE G PF P QL+GVFP+ASS
Sbjct: 529 LKYYYQGCASWNWYFPYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSH 588
Query: 531 LPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTL 590
+PE + KLM+DP SPI DFYP DF++D+NGK+++WQG+A LPF+DE RL + L
Sbjct: 589 VPEPWAKLMSDPESPIIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQL 648
Query: 591 TEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLK-IKERVEVKERLNPELS-DGMN 648
T EE +RN + L++ P H K++K I E+ + E + +S DGM
Sbjct: 649 TGEEVKRNKRGDNYLYISNQSP----------HYKKVKKISEKDD--ESVCKAISFDGMR 696
Query: 649 GYISPCA-GDPHPPVFRSPVASMEDIMGNQVLCAIYKLPD 687
G + V +SP++ + DI N + ++ P+
Sbjct: 697 GTLGKTELNTAISGVLKSPISGLSDINDNITVTTTFRDPE 736
Score = 61 (26.5 bits), Expect = 9.3e-129, Sum P(3) = 9.3e-129
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 827 GGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNG-GPRYPPRPMGSTSS 885
G Q Y +N+ ++ N Y+ Y+++ G + + YN Q G R+
Sbjct: 822 GNQGQSYQNNSRNY-NYNYNNNYNQHQGGGYQNN-YNNRQQQQYGHNQRF-------NQD 872
Query: 886 GANLYPPQGGYSGYQSPAAGSFNQWGGANQ 915
+N Q ++ Y P ++ Q GG+ Q
Sbjct: 873 NSN--QQQRNFNNYNGPRNNNYQQQGGSRQ 900
Score = 56 (24.8 bits), Expect = 3.1e-128, Sum P(3) = 3.1e-128
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 825 YDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPR 874
Y+ Y+QH ++ N R QY N + GPR
Sbjct: 839 YNNNYNQHQGGGYQNNYNNRQQQQYGHNQRFNQDNSNQQQRNFNNYNGPR 888
Score = 45 (20.9 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
Identities = 35/171 (20%), Positives = 67/171 (39%)
Query: 700 IFPKKIVQLED-LKPAPVLWHEDSGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHM 758
IF K +LE+ + P VL +E SG + N H ++ + ++ HR++ +++
Sbjct: 742 IFEAK--RLENAVDPPQVLPNEQSGNKHRPVIGFNSH--LTRAYVPDSGHRMLNAGIRNQ 797
Query: 759 KVDR-NGYGDRMHGXXXXXXXXXXXXXXXXXQEYGV-YDQGYNR-FSQPRTDSYPAGHSQ 815
+ NG G +G Q Y+ YN ++Q + Y ++
Sbjct: 798 QGGGGNGGGGGGYGQGGGYGQGIGGNQGQSYQNNSRNYNYNYNNNYNQHQGGGYQNNYNN 857
Query: 816 SSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSG 866
Q Y G++Q + + S+ R ++ N +G + Y G
Sbjct: 858 RQ----QQQY--GHNQRFNQDNSNQQQRNFN-----NYNGPRNNN-YQQQG 896
>WB|WBGene00006964 [details] [associations]
symbol:xrn-2 species:6239 "Caenorhabditis elegans"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IMP;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040028 "regulation of vulval
development" evidence=IGI] [GO:0010587 "miRNA catabolic process"
evidence=IGI;IMP;IDA] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IMP] [GO:0040034 "regulation of
development, heterochronic" evidence=IGI] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0006355 GO:GO:0046872 GO:GO:0018996 GO:GO:0008270
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003676
EMBL:AL110490 GO:GO:0040034 GO:GO:0040028 GO:GO:0000738
GO:GO:0060965 GO:GO:0006353 GO:GO:0010587 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1235 (439.8 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 292/717 (40%), Positives = 403/717 (56%)
Query: 36 LPPKSDSQV-FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEG 94
+PPK + FDSN ITPGT FMA L+ AL+YYIH R+ ND W I++ILSDANVPGEG
Sbjct: 146 VPPKKKEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDASWANIEIILSDANVPGEG 205
Query: 95 EHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKC 154
EHKIM YVR QR P +DPNT HCL G DADLIML +ATHE +F+I+RE F P Q C
Sbjct: 206 EHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE-FVPNQPRAC 264
Query: 155 FLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK---KPYQFLHIWTLREYLDYEFRIP 211
LCGQ GH C G A+ + + GD+ P+ K + FL I LREYL+ E +P
Sbjct: 265 DLCGQYGHELKECRG-AENET----DLGDDYCKPEQREKNFIFLRIPVLREYLEKELSMP 319
Query: 212 NPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTD 271
N PF+ D+E +DD++F+CFFVGNDFLPH+P+LEIREGAI+ L+ +YK+ + GYLT
Sbjct: 320 NLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYLTK 379
Query: 272 GSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQAR------RGDDVEPL 325
P L RVE ++ +G ED IF++R + +R E + +KA+ + RG
Sbjct: 380 DGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQENQRNKKARMQMYGGGGRGGRGRGR 439
Query: 326 A--QPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIG 383
Q + VP HG LA P +P S G + R + +
Sbjct: 440 GRGQQPAFVPT---HGI-LA--PMAAPMHHS---GESTRQMASEARQTAMKFTNDANETA 490
Query: 384 AAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEEDKVKLGEPGWKERYYEE 443
AA ++A + + + K + + P++D ++L E GWK+RYY
Sbjct: 491 AANLKALLNVKGEESPADIASRKRKAEQPLIKPEEEEDEGPKDD-IRLYESGWKDRYYRA 549
Query: 444 KFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF 503
KF+ + + E R V Y EGLCWV+ YYY+G SW W++PYHYAPFASD + + +F
Sbjct: 550 KFDVGSDDI--EFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASDFETVGEF 607
Query: 504 NISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKR 562
F PF P QL+ VFP+AS LP ++KLM +SPI D YP DF +D+NGK+
Sbjct: 608 QPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFRIDLNGKK 667
Query: 563 YSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDE 622
Y+WQG+A LPF+DE RLL ++ + TLT EE +RN+ + +F+ +H S + +
Sbjct: 668 YAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRIFIGRNHK-SFEFF---Q 723
Query: 623 HCKQLKIKERVEVKERLNPELSDGMNGYIS--PCAGDPHPPVFRSPVASME--DIMGNQV 678
+ K + V L+P L +G++G I+ A P P F SPV E D+ N
Sbjct: 724 QVAESKSDDLVP----LDPTLLNGVSGKIAYDSTATAPGLP-FVSPVNHDECQDLPTNCG 778
Query: 679 LCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLK-PAPVLWHEDSGRRPHENGRHNP 734
+C +Y+ P+ P IFP ++L+ K P L +D R +GR+ P
Sbjct: 779 ICVLYEDPEY-------PQDYIFPA--LRLDGAKEPEKTLKPDDWNDR--RDGRYQP 824
Score = 45 (20.9 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 792 GVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTS 838
G Y Q YN+ R G +PPY GG Y N+S
Sbjct: 931 GSYHQPYNQ--DQRRGGRGGGGGPPGYQ--RPPYRGGGGGGYHGNSS 973
>UNIPROTKB|Q9U299 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6239
"Caenorhabditis elegans" [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0000738
"DNA catabolic process, exonucleolytic" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0005730
GO:GO:0002119 GO:GO:0006355 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 GO:GO:0006397 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:AL110490 GO:GO:0040034 GO:GO:0040028
GO:GO:0000738 GO:GO:0060965 GO:GO:0006353 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1235 (439.8 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 292/717 (40%), Positives = 403/717 (56%)
Query: 36 LPPKSDSQV-FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEG 94
+PPK + FDSN ITPGT FMA L+ AL+YYIH R+ ND W I++ILSDANVPGEG
Sbjct: 146 VPPKKKEEAHFDSNCITPGTPFMARLADALRYYIHDRVTNDASWANIEIILSDANVPGEG 205
Query: 95 EHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKC 154
EHKIM YVR QR P +DPNT HCL G DADLIML +ATHE +F+I+RE F P Q C
Sbjct: 206 EHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIMLGIATHEANFNIIREE-FVPNQPRAC 264
Query: 155 FLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPK---KPYQFLHIWTLREYLDYEFRIP 211
LCGQ GH C G A+ + + GD+ P+ K + FL I LREYL+ E +P
Sbjct: 265 DLCGQYGHELKECRG-AENET----DLGDDYCKPEQREKNFIFLRIPVLREYLEKELSMP 319
Query: 212 NPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTD 271
N PF+ D+E +DD++F+CFFVGNDFLPH+P+LEIREGAI+ L+ +YK+ + GYLT
Sbjct: 320 NLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYLTK 379
Query: 272 GSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQAR------RGDDVEPL 325
P L RVE ++ +G ED IF++R + +R E + +KA+ + RG
Sbjct: 380 DGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQENQRNKKARMQMYGGGGRGGRGRGR 439
Query: 326 A--QPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIG 383
Q + VP HG LA P +P S G + R + +
Sbjct: 440 GRGQQPAFVPT---HGI-LA--PMAAPMHHS---GESTRQMASEARQTAMKFTNDANETA 490
Query: 384 AAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEEDKVKLGEPGWKERYYEE 443
AA ++A + + + K + + P++D ++L E GWK+RYY
Sbjct: 491 AANLKALLNVKGEESPADIASRKRKAEQPLIKPEEEEDEGPKDD-IRLYESGWKDRYYRA 549
Query: 444 KFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF 503
KF+ + + E R V Y EGLCWV+ YYY+G SW W++PYHYAPFASD + + +F
Sbjct: 550 KFDVGSDDI--EFRHRVAWAYVEGLCWVLRYYYQGCASWDWYFPYHYAPFASDFETVGEF 607
Query: 504 NISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKR 562
F PF P QL+ VFP+AS LP ++KLM +SPI D YP DF +D+NGK+
Sbjct: 608 QPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSPIIDLYPADFRIDLNGKK 667
Query: 563 YSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDE 622
Y+WQG+A LPF+DE RLL ++ + TLT EE +RN+ + +F+ +H S + +
Sbjct: 668 YAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRIFIGRNHK-SFEFF---Q 723
Query: 623 HCKQLKIKERVEVKERLNPELSDGMNGYIS--PCAGDPHPPVFRSPVASME--DIMGNQV 678
+ K + V L+P L +G++G I+ A P P F SPV E D+ N
Sbjct: 724 QVAESKSDDLVP----LDPTLLNGVSGKIAYDSTATAPGLP-FVSPVNHDECQDLPTNCG 778
Query: 679 LCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLK-PAPVLWHEDSGRRPHENGRHNP 734
+C +Y+ P+ P IFP ++L+ K P L +D R +GR+ P
Sbjct: 779 ICVLYEDPEY-------PQDYIFPA--LRLDGAKEPEKTLKPDDWNDR--RDGRYQP 824
Score = 45 (20.9 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 792 GVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTS 838
G Y Q YN+ R G +PPY GG Y N+S
Sbjct: 931 GSYHQPYNQ--DQRRGGRGGGGGPPGYQ--RPPYRGGGGGGYHGNSS 973
>POMBASE|SPAC26A3.12c [details] [associations]
symbol:dhp1 "5'-3' exoribonuclease Dhp1" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004534 "5'-3' exoribonuclease
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=ISO;IGI;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0030846 "termination of RNA polymerase II
transcription, poly(A)-coupled" evidence=ISO] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239
PomBase:SPAC26A3.12c GO:GO:0005634 EMBL:CU329670 GO:GO:0070317
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0003676
GO:GO:0000070 GO:GO:0006995 GO:GO:0006364 PDB:3FQD PDBsum:3FQD
GO:GO:0030846 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:D17752 PIR:S43891
RefSeq:NP_594155.1 DIP:DIP-59743N STRING:P40848
EnsemblFungi:SPAC26A3.12c.1 GeneID:2542674 KEGG:spo:SPAC26A3.12c
OMA:INSEPAL OrthoDB:EOG43NBMS NextBio:20803722 Uniprot:P40848
Length = 991
Score = 628 (226.1 bits), Expect = 2.9e-125, Sum P(3) = 2.9e-125
Identities = 138/334 (41%), Positives = 195/334 (58%)
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 474
K+ +N D V+L EPG++ERYYE+KF+ +P+E E+ R + V Y GLCWV+ Y
Sbjct: 570 KAPDSTEENENTDTVRLYEPGYRERYYEQKFHI-SPDEPEKIR-EAVKHYVHGLCWVLLY 627
Query: 475 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEH 534
YY+G SW W+YPYHYAPFA+D KDL ++ FEL PFKP+ QLLGV P+AS + LPE
Sbjct: 628 YYQGCPSWTWYYPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEK 687
Query: 535 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 594
+ LMTD NS I DFYP +F +D+NGK++ WQG+A LPFIDE RLL+ V KI LTEEE
Sbjct: 688 LQTLMTDENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEE 747
Query: 595 ARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYIS-- 652
++RN + +LF+ HP+ E KQL K+R +L+ +++ G+ G ++
Sbjct: 748 SKRNEDGSTLLFISEHHPM------FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTN 801
Query: 653 ----PCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKI 705
P P S A + I NQ + ++++P +H H + GV P ++
Sbjct: 802 DSVIPNVSVQCPIDVTSADALQKYGSIDDNQSISLVFEVPKSHFVHKSMLLRGVKMPNRV 861
Query: 706 VQLEDLKPAPVLWHEDSGRRPHEN---GRHNPHG 736
+ ED+ S RR + N G H +G
Sbjct: 862 LTPEDINQVRAE-RSFSSRRNNGNSYRGGHQSYG 894
Score = 626 (225.4 bits), Expect = 2.9e-125, Sum P(3) = 2.9e-125
Identities = 138/290 (47%), Positives = 185/290 (63%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
+DSN ITPGT FM L+ +L+YYI +LN+DP W ++ ILSDA+VPGEGEHKIM ++R
Sbjct: 157 WDSNCITPGTPFMDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRS 216
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLA 164
QR P YDPNT H +YGLDADLIML LATHE HF +LRE VF F Q G
Sbjct: 217 QRVKPEYDPNTHHVVYGLDADLIMLGLATHEPHFRVLREDVF--------F---QQGSTK 265
Query: 165 ANCEGKAKRKAGEFDEKGDEVVVP-KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIV 223
E + K D+ + VP KKP+ +L++ LREYL+ E +PN PF DLE +
Sbjct: 266 KTKEERLGIK--RLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAI 323
Query: 224 DDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLT-DGSKPSLRRVEH 282
DD++F FFVGNDFLPH+P+L+IR+GA+ L +++ +GGYLT DGS +L R E
Sbjct: 324 DDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSV-NLARAEV 382
Query: 283 FIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDSLV 332
+ AVG+ ED IF+ RL Q+ R + + + +R + E + D++V
Sbjct: 383 ILSAVGNQEDDIFK---RLKQQEDRRNENYRRRQQRESNQESESYVDNVV 429
Score = 69 (29.3 bits), Expect = 2.9e-125, Sum P(3) = 2.9e-125
Identities = 27/114 (23%), Positives = 38/114 (33%)
Query: 801 FSQPRTD--SYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHP 858
FS R + SY GH + + Q Y T+ N P + N +
Sbjct: 876 FSSRRNNGNSYRGGHQSYGVRRSYQSQSYSSRQSYTGVTNGFANGGVQPPWSGNGNFPRS 935
Query: 859 THLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYS-GYQSPAAGSFNQWG 911
YN G H+ G R + N Y G GYQ + + N+ G
Sbjct: 936 NASYNSRGGHEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNNNNRNG 989
>CGD|CAL0003816 [details] [associations]
symbol:RAT1 species:5476 "Candida albicans" [GO:0004534
"5'-3' exoribonuclease activity" evidence=IGI] [GO:0008017
"microtubule binding" evidence=IGI] [GO:0000150 "recombinase
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0030846 "termination
of RNA polymerase II transcription, poly(A)-coupled" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent" evidence=IEA]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 CGD:CAL0003816 GO:GO:0005634 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0008017 EMBL:AACQ01000005
EMBL:AACQ01000006 GO:GO:0006364 GO:GO:0006353 GO:GO:0000150
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
KO:K12619 RefSeq:XP_722750.1 RefSeq:XP_722895.1 STRING:Q5AMG5
GeneID:3635468 GeneID:3635686 KEGG:cal:CaO19.12150
KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 1142 (407.1 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 302/856 (35%), Positives = 427/856 (49%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
+DSN ITPGT FM L+ AL+Y++ +L++DPGW ++VI+SDA VPGEGEHK+MS++R
Sbjct: 151 WDSNAITPGTPFMDRLAEALRYWVAYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRS 210
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLA 164
QR+ P YDPNT+HC+YGLDADLI L LATHE HF +LRE VF QDK F
Sbjct: 211 QRSDPQYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFA--SQDKKFTI------- 261
Query: 165 ANCEGKAKRKAGEFDEKGDEVVVP-KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIV 223
K + + + GD V KKP+ +LH+ LREYL E P F +LE +
Sbjct: 262 -------KDQIADANSNGDTVAKEDKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAI 314
Query: 224 DDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHF 283
DD++F+CFF GNDFLPH+P+L++R+ I+ L+ +K+ L Y+T K +L+ VE
Sbjct: 315 DDWVFLCFFAGNDFLPHLPSLDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVL 374
Query: 284 IQAVGSYEDRIFQKRARLHQRHAERIKREK--------------AQARRGDDVEPLAQPD 329
+ + E IF+ + QR E KR K +Q +G D PL D
Sbjct: 375 MSNLAYKESEIFKNKHAAEQRREENNKRRKLAQEQERALKRVYSSQVSKGKDKAPLTA-D 433
Query: 330 SLVPVSRFHGSRLA--SGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIV 387
+P+ G + + + S Q+ + N S ++ +L +V
Sbjct: 434 VNMPLMDTSGQNVEGYANLTNSDIVQNRAILTKAN-LANSDAAAELKKLIDSKKTQVTVV 492
Query: 388 EAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEEDK------VKLGEPGWKERYY 441
+ + + ++ D S + PEEDK +KL EPG+ +RYY
Sbjct: 493 QDQIATDSSANSETTTSESELEEIQSDNSLKRKLE-PEEDKQTQSDDIKLWEPGYNKRYY 551
Query: 442 EEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLD 501
E KF+ ++ EE E+T++DVV Y EG+ WV YYY+G SW W++PYHYAPFA+D +L+
Sbjct: 552 EAKFHYQSDEEIEQTKRDVVRHYVEGIAWVALYYYQGCPSWNWYFPYHYAPFAADFTNLE 611
Query: 502 QF---NISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDM 558
+ + F+LG PF+PF QL+ V P+AS H LP+ +R LM++P+S I DFYP +FE+DM
Sbjct: 612 ELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQVFRDLMSNPDSEIIDFYPEEFEIDM 671
Query: 559 NGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIY 618
NGK+ SWQGI LPFIDE RLLD V+K LT +E RN+ LF+ P + +
Sbjct: 672 NGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDEKSRNTNKEAELFI---SPANKNFS 728
Query: 619 TLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPP-VFRSPVAS--MEDIMG 675
E K K E EV + G++G I G +P VF P+ M ++
Sbjct: 729 KFSE--KLYKENEN-EVTFKY---AKSGLSGKIFKL-GTFNPEGVFNFPLNEGYMPNVNN 781
Query: 676 NQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPH 735
+ AIY P + G I P + D +L+ D GR N
Sbjct: 782 SDYFQAIYHFPKTKTGKSMILNGHIAPLPALTTADKND--LLYQLDKFNNRRNGGRFN-- 837
Query: 736 GTISGRQL---GEAAHRLVANSLQHMKVDRNGYGDRM----HGXXXXXXXXXXXXXXXXX 788
T+ G A L + R GY + +G
Sbjct: 838 STLDNSDYINKGPAGKELYKT----YSMRRGGYRSYLQYLTNGHHPDHQSQNSQYLSYGQ 893
Query: 789 QE-YG---VYDQ-GYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNR 843
Q+ YG Y+Q GY Q R + ++Q + Q Y+ Y SNT N
Sbjct: 894 QKPYGGQGSYNQQGYYN-QQGRYNQQGNNYNQQGRYSQQSQYN-----QYRSNTQRFNNN 947
Query: 844 RYHPQYDRNS-SGEHP 858
+ + Q NS SG P
Sbjct: 948 QNYNQSSNNSRSGYLP 963
Score = 39 (18.8 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 898 GYQSP--AAGSFNQWGGANQ 915
G Q P GS+NQ G NQ
Sbjct: 892 GQQKPYGGQGSYNQQGYYNQ 911
>UNIPROTKB|Q5AMG5 [details] [associations]
symbol:RAT1 "5'-3' exoribonuclease 2" species:237561
"Candida albicans SC5314" [GO:0000150 "recombinase activity"
evidence=IGI] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0008017 "microtubule binding" evidence=IGI] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 CGD:CAL0003816
GO:GO:0005634 GO:GO:0006355 GO:GO:0006397 GO:GO:0003676
GO:GO:0008017 EMBL:AACQ01000005 EMBL:AACQ01000006 GO:GO:0006364
GO:GO:0006353 GO:GO:0000150 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_722750.1
RefSeq:XP_722895.1 STRING:Q5AMG5 GeneID:3635468 GeneID:3635686
KEGG:cal:CaO19.12150 KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 1142 (407.1 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 302/856 (35%), Positives = 427/856 (49%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
+DSN ITPGT FM L+ AL+Y++ +L++DPGW ++VI+SDA VPGEGEHK+MS++R
Sbjct: 151 WDSNAITPGTPFMDRLAEALRYWVAYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRS 210
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLA 164
QR+ P YDPNT+HC+YGLDADLI L LATHE HF +LRE VF QDK F
Sbjct: 211 QRSDPQYDPNTKHCIYGLDADLIFLGLATHEPHFRVLREDVFA--SQDKKFTI------- 261
Query: 165 ANCEGKAKRKAGEFDEKGDEVVVP-KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIV 223
K + + + GD V KKP+ +LH+ LREYL E P F +LE +
Sbjct: 262 -------KDQIADANSNGDTVAKEDKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAI 314
Query: 224 DDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHF 283
DD++F+CFF GNDFLPH+P+L++R+ I+ L+ +K+ L Y+T K +L+ VE
Sbjct: 315 DDWVFLCFFAGNDFLPHLPSLDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVL 374
Query: 284 IQAVGSYEDRIFQKRARLHQRHAERIKREK--------------AQARRGDDVEPLAQPD 329
+ + E IF+ + QR E KR K +Q +G D PL D
Sbjct: 375 MSNLAYKESEIFKNKHAAEQRREENNKRRKLAQEQERALKRVYSSQVSKGKDKAPLTA-D 433
Query: 330 SLVPVSRFHGSRLA--SGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIV 387
+P+ G + + + S Q+ + N S ++ +L +V
Sbjct: 434 VNMPLMDTSGQNVEGYANLTNSDIVQNRAILTKAN-LANSDAAAELKKLIDSKKTQVTVV 492
Query: 388 EAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEEDK------VKLGEPGWKERYY 441
+ + + ++ D S + PEEDK +KL EPG+ +RYY
Sbjct: 493 QDQIATDSSANSETTTSESELEEIQSDNSLKRKLE-PEEDKQTQSDDIKLWEPGYNKRYY 551
Query: 442 EEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLD 501
E KF+ ++ EE E+T++DVV Y EG+ WV YYY+G SW W++PYHYAPFA+D +L+
Sbjct: 552 EAKFHYQSDEEIEQTKRDVVRHYVEGIAWVALYYYQGCPSWNWYFPYHYAPFAADFTNLE 611
Query: 502 QF---NISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDM 558
+ + F+LG PF+PF QL+ V P+AS H LP+ +R LM++P+S I DFYP +FE+DM
Sbjct: 612 ELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQVFRDLMSNPDSEIIDFYPEEFEIDM 671
Query: 559 NGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIY 618
NGK+ SWQGI LPFIDE RLLD V+K LT +E RN+ LF+ P + +
Sbjct: 672 NGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDEKSRNTNKEAELFI---SPANKNFS 728
Query: 619 TLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPP-VFRSPVAS--MEDIMG 675
E K K E EV + G++G I G +P VF P+ M ++
Sbjct: 729 KFSE--KLYKENEN-EVTFKY---AKSGLSGKIFKL-GTFNPEGVFNFPLNEGYMPNVNN 781
Query: 676 NQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPH 735
+ AIY P + G I P + D +L+ D GR N
Sbjct: 782 SDYFQAIYHFPKTKTGKSMILNGHIAPLPALTTADKND--LLYQLDKFNNRRNGGRFN-- 837
Query: 736 GTISGRQL---GEAAHRLVANSLQHMKVDRNGYGDRM----HGXXXXXXXXXXXXXXXXX 788
T+ G A L + R GY + +G
Sbjct: 838 STLDNSDYINKGPAGKELYKT----YSMRRGGYRSYLQYLTNGHHPDHQSQNSQYLSYGQ 893
Query: 789 QE-YG---VYDQ-GYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNR 843
Q+ YG Y+Q GY Q R + ++Q + Q Y+ Y SNT N
Sbjct: 894 QKPYGGQGSYNQQGYYN-QQGRYNQQGNNYNQQGRYSQQSQYN-----QYRSNTQRFNNN 947
Query: 844 RYHPQYDRNS-SGEHP 858
+ + Q NS SG P
Sbjct: 948 QNYNQSSNNSRSGYLP 963
Score = 39 (18.8 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 898 GYQSP--AAGSFNQWGGANQ 915
G Q P GS+NQ G NQ
Sbjct: 892 GQQKPYGGQGSYNQQGYYNQ 911
>SGD|S000005574 [details] [associations]
symbol:RAT1 "Nuclear 5' to 3' single-stranded RNA
exonuclease" species:4932 "Saccharomyces cerevisiae" [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0030846 "termination of RNA
polymerase II transcription, poly(A)-coupled" evidence=IMP]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IGI;IMP] [GO:0006396 "RNA processing"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006353 "DNA-dependent transcription, termination"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SGD:S000005574
GO:GO:0005739 GO:GO:0005634 EMBL:BK006948 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0006364 GO:GO:0030846
GO:GO:0071028 GO:GO:0030847 EMBL:L06011 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098 KO:K12619
OrthoDB:EOG43NBMS EMBL:M95626 EMBL:Z11746 EMBL:S61567 EMBL:Z74956
PIR:S20126 RefSeq:NP_014691.1 ProteinModelPortal:Q02792 SMR:Q02792
DIP:DIP-6692N IntAct:Q02792 MINT:MINT-639904 STRING:Q02792
PaxDb:Q02792 PeptideAtlas:Q02792 EnsemblFungi:YOR048C GeneID:854213
KEGG:sce:YOR048C OMA:NMVRPRK NextBio:976071 Genevestigator:Q02792
GermOnline:YOR048C Uniprot:Q02792
Length = 1006
Score = 611 (220.1 bits), Expect = 1.4e-107, Sum P(3) = 1.4e-107
Identities = 132/293 (45%), Positives = 179/293 (61%)
Query: 41 DSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMS 100
+ + +DSN ITPGT FM L+ AL+Y+ +L DPGW+ ++VI+SDA VPGEGEHKIM+
Sbjct: 151 NKKTWDSNAITPGTPFMDKLAAALRYWTAFKLATDPGWKNLQVIISDATVPGEGEHKIMN 210
Query: 101 YVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQP 160
++R QR P Y+PNT HC+YGLDADLI L LATHE HF ILRE VF QD +
Sbjct: 211 FIRSQRADPEYNPNTTHCIYGLDADLIFLGLATHEPHFKILREDVFA---QDN----RKR 263
Query: 161 GHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLE 220
+L + K +F +K + ++P+ +LHI LREYL E +P PF DLE
Sbjct: 264 NNLKDTINMTEEEK--QFLQKQNS----EQPFLWLHINVLREYLSAELWVPGLPFTFDLE 317
Query: 221 CIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRV 280
+DD++FMCFF GNDFLPH+P L++RE +I++L+ ++K L Y+T +L V
Sbjct: 318 RAIDDWVFMCFFCGNDFLPHLPCLDVRENSIDILLDIWKVVLPKLKTYMTCDGVLNLPSV 377
Query: 281 EHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQAR--RGDDVEPLAQPDSL 331
E +Q +GS E IF+ R R E +R KAQ +G D P + L
Sbjct: 378 ETLLQHLGSREGDIFKTRHIQEARKKEAFERRKAQKNMSKGQDRHPTVATEQL 430
Score = 517 (187.1 bits), Expect = 1.4e-107, Sum P(3) = 1.4e-107
Identities = 103/217 (47%), Positives = 134/217 (61%)
Query: 382 IGAAIVEAENSFETDPQXXXXXXXXXXXXXXRDKSDAFNSDNPEEDKVKLGEPGWKERYY 441
I A + + ENS ET K+ F++D + VKL EPG+ ERYY
Sbjct: 555 IVADVNDRENS-ETTEVSRDSPVHSTVNVSEGPKNGVFDTD----EFVKLFEPGYHERYY 609
Query: 442 EEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLD 501
KF+ TP++ E+ RKD+V Y EG+ WV+ YYY+G SW WFYPYHYAP A+D
Sbjct: 610 TAKFHV-TPQDIEQLRKDMVKCYIEGVAWVLMYYYQGCASWNWFYPYHYAPLATDFHGFS 668
Query: 502 QFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGK 561
I FE G PF P+ QL+ V P+AS HALP+ +R LM++P+S I DFYP +F +DMNGK
Sbjct: 669 HLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLMSEPDSEIIDFYPEEFPIDMNGK 728
Query: 562 RYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRN 598
+ SWQGIA LPFID+ RLL V+ L++ E RN
Sbjct: 729 KMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARN 765
Score = 38 (18.4 bits), Expect = 1.4e-107, Sum P(3) = 1.4e-107
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 824 PYDGGYSQH-YASNTSHHPNRRYHPQYDRNSSGEHP 858
P GGY Y + S + + H Y RNS P
Sbjct: 916 PRTGGYRAFFYFAELSRNNVQPAH-NYGRNSYNSQP 950
>DICTYBASE|DDB_G0269922 [details] [associations]
symbol:xrn2 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 dictyBase:DDB_G0269922 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_646407.1
STRING:Q55CS4 EnsemblProtists:DDB0237528 GeneID:8617364
KEGG:ddi:DDB_G0269922 InParanoid:Q55CS4 Uniprot:Q55CS4
Length = 1190
Score = 615 (221.5 bits), Expect = 2.6e-98, Sum P(3) = 2.6e-98
Identities = 126/275 (45%), Positives = 177/275 (64%)
Query: 39 KSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKI 98
K + FDSN ITPGT FM ++ +L+ Y+ +L DP W+ +K+I+SDA+VPGEGEHKI
Sbjct: 154 KKNKFKFDSNCITPGTLFMDRVAESLRTYVAEKLTTDPAWKDVKIIISDASVPGEGEHKI 213
Query: 99 MSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCG 158
M YVR QR P YDPN +H +YGLDADLIML LATHEV+F ILRE + P + C C
Sbjct: 214 MDYVRHQRAQPDYDPNLKHIIYGLDADLIMLGLATHEVNFDILREFI-QPIARGVCHKCH 272
Query: 159 QPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEID 218
+ GHLA C+ E D+ + +V K YQ LH+ L+EYL+ E ++ + PF D
Sbjct: 273 KKGHLAIECKE-------EVDDSVKDFLV--KNYQILHLHLLKEYLELETKV-STPFGFD 322
Query: 219 LECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLR 278
++ IVDDFIF+CFFVGNDFLPH+P LEI++GAI+ ++ YK+ + YL + +
Sbjct: 323 IDRIVDDFIFLCFFVGNDFLPHLPNLEIKDGAIDRVIKCYKELLPSFDDYLVSNGEVNFP 382
Query: 279 RVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREK 313
R+ A+ E+ FQ++ Q+ A+ +K+ +
Sbjct: 383 RLSQIFVALTKGEEESFQRKI---QKDAQILKKRQ 414
Score = 414 (150.8 bits), Expect = 2.6e-98, Sum P(3) = 2.6e-98
Identities = 80/187 (42%), Positives = 113/187 (60%)
Query: 429 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 488
+K E GW++RYY+ F E E+ K + Y EGL WV+ YY++G SW W+YPY
Sbjct: 607 IKYSEEGWRDRYYQSCFQV----ENEDDIKQICKSYVEGLVWVLKYYFKGCSSWGWYYPY 662
Query: 489 HYAPFASDL-KDLDQFNI-SFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMT-----D 541
HY+P+ +D+ K DQF +E+G PFKPFNQL+ V P AS +P+ Y+KLM +
Sbjct: 663 HYSPYITDISKFFDQFEYPQYEMGEPFKPFNQLMSVLPPASCQFVPKPYQKLMGISVDGE 722
Query: 542 P--NSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNS 599
P SPI +FYP F +D ++G+ LPFI+ +LL + K E LTEEE RN+
Sbjct: 723 PVEESPIIEFYPRAFRIDRGPTEPLYKGVCLLPFINSIKLLKTISKTEPLLTEEEVDRNT 782
Query: 600 IMADMLF 606
+ D++F
Sbjct: 783 LGHDLMF 789
Score = 56 (24.8 bits), Expect = 2.6e-98, Sum P(3) = 2.6e-98
Identities = 21/129 (16%), Positives = 52/129 (40%)
Query: 795 DQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHY--ASNTSHHPNRRYHPQYDR- 851
+ YN ++ + ++ ++ + Y+ Y+ +Y +N ++ N Y+ Y+
Sbjct: 1001 NSNYNNYNNSYNNGNNYNNNNNNGNGYNSNYNNNYNNNYNNGNNNGNNYNNNYNNNYNNG 1060
Query: 852 NSSG--EHPTHLYNPS--GIHQNGGPRYPPRPMGSTSSGANLYPPQGGYSGYQSPAAGSF 907
N++G + + YN + G + N + ++ N Y ++ P+
Sbjct: 1061 NNNGFNNNNNNNYNNNNYGGYDNNNGFNNNNNNNNNNNNNNSY--NYDFNNLNDPSLIDI 1118
Query: 908 NQWGGANQS 916
N +GG +
Sbjct: 1119 NNYGGGGNN 1127
Score = 51 (23.0 bits), Expect = 8.7e-98, Sum P(3) = 8.7e-98
Identities = 15/75 (20%), Positives = 35/75 (46%)
Query: 797 GYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGE 856
GYNRF+ +Y ++ + + + + +N +++ N Y+ + N++
Sbjct: 917 GYNRFNN---QNYNNNRYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNYNNYNNNNN 973
Query: 857 HPTHLYNPSGIHQNG 871
+ + YN +G + NG
Sbjct: 974 YKNNNYNNNG-NYNG 987
Score = 50 (22.7 bits), Expect = 1.1e-97, Sum P(3) = 1.1e-97
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 825 YDGGYSQHYASNTSHHPNRRYHPQYDR--NSSGEHPTHLYNPSGIHQNGGPRYPPRPMGS 882
Y+G S +Y +N +++ N Y+ Y+ N+ + + N +G + N Y
Sbjct: 985 YNGNNSNNYNNNNNYN-NSNYN-NYNNSYNNGNNYNNNNNNGNGYNSNYNNNYNNNYNNG 1042
Query: 883 TSSGAN 888
++G N
Sbjct: 1043 NNNGNN 1048
Score = 47 (21.6 bits), Expect = 2.3e-97, Sum P(3) = 2.3e-97
Identities = 19/92 (20%), Positives = 39/92 (42%)
Query: 813 HSQSSISAAQPPYDGGYSQHYASNTSHHPNRRYHPQYDRN-SSGEHPTHLYNPS--GIHQ 869
++ S+ + Y+ G + + +N + N Y+ Y+ N ++G + + YN + +
Sbjct: 999 YNNSNYNNYNNSYNNGNNYNNNNNNGNGYNSNYNNNYNNNYNNGNNNGNNYNNNYNNNYN 1058
Query: 870 NGGPRYPPRPMGSTSSGANLYPPQGGYSGYQS 901
NG G ++ N Y Y GY +
Sbjct: 1059 NGNNN------GFNNNNNNNYN-NNNYGGYDN 1083
>POMBASE|SPAC17A5.14 [details] [associations]
symbol:exo2 "exonuclease II Exo2" species:4896
"Schizosaccharomyces pombe" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0000741
"karyogamy" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IDA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IDA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 PomBase:SPAC17A5.14 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 GO:GO:0000184 GenomeReviews:CU329670_GR GO:GO:0000287
GO:GO:0003723 GO:GO:0000932 GO:GO:0006402 GO:GO:0005874
GO:GO:0006364 GO:GO:0000741 eggNOG:COG5049 KO:K12618 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 EMBL:L35232
PIR:S78457 RefSeq:NP_593482.1 STRING:P40383
EnsemblFungi:SPAC17A5.14.1 GeneID:2542204 KEGG:spo:SPAC17A5.14
HOGENOM:HOG000160331 OrthoDB:EOG4PP1R0 NextBio:20803274
Uniprot:P40383
Length = 1328
Score = 422 (153.6 bits), Expect = 2.6e-86, Sum P(3) = 2.6e-86
Identities = 86/196 (43%), Positives = 115/196 (58%)
Query: 414 DKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMH 473
++ A N E+D ++ WK+ YY K +E E K + RY EGL WV+
Sbjct: 479 NEEQALKEKNVEKDFIQ-----WKDDYYRSKVGFSYYDE--EALKAMAERYVEGLQWVLF 531
Query: 474 YYYEGVCSWQWFYPYHYAPFASD-LKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALP 532
YYY G SW W+Y YH+AP SD LK LD I F++G PF+PF QL+ V P+ S +P
Sbjct: 532 YYYRGCQSWGWYYNYHFAPKISDVLKGLD-VKIDFKMGTPFRPFEQLMAVLPARSQALVP 590
Query: 533 EHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTE 592
+R LM + SPI DFYP +F +D NGK SW+ + +PFIDE RL+D + + LTE
Sbjct: 591 PCFRDLMVNSESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTE 650
Query: 593 EEARRNSIMADMLFVL 608
EE +RNS A +F L
Sbjct: 651 EERKRNSFNAPTVFSL 666
Score = 345 (126.5 bits), Expect = 2.6e-86, Sum P(3) = 2.6e-86
Identities = 64/110 (58%), Positives = 80/110 (72%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGT FM +S L Y+IH ++ ND W+ I+VI S + PGEGEHKIM Y+R
Sbjct: 127 FDSNCITPGTTFMERVSRQLYYFIHKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRT 186
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDK 153
Q+ P Y+PNTRHCLYGLDADLIML L +H+ HF +LRE V F P +++
Sbjct: 187 QKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRNR 236
Score = 237 (88.5 bits), Expect = 2.6e-86, Sum P(3) = 2.6e-86
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 192 YQFLHIWTLREYLDYEFRIPNPPF--EIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 249
+ LH+ LREYL++EF+ F + DLE I+DDFI + FFVGNDFLPH+P L I EG
Sbjct: 245 FYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLHINEG 304
Query: 250 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
A+ L+ ++YKK + GGY+ + ++ R+E + + ++E IF+
Sbjct: 305 ALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFK 351
>RGD|1309713 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA;ISO] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 RGD:1309713 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OrthoDB:EOG49S65H
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
IPI:IPI00373532 Ensembl:ENSRNOT00000014481 UCSC:RGD:1309713
Uniprot:D4ABN8
Length = 1723
Score = 452 (164.2 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 80/182 (43%), Positives = 111/182 (60%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D F + ++D + +K YY K + E D Y + + W++HYYY
Sbjct: 414 DNFEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--EFLADQAACYVQAIQWILHYYY 471
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V PSAS LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPSASKTLLPTCYQ 531
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERK 591
Query: 597 RN 598
RN
Sbjct: 592 RN 593
Score = 333 (122.3 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 206 (77.6 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 46 (21.3 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 689 HKHVTRPPAGVIFPKKIVQLEDLKPAPVLWHEDSGRRPHENGRHNPH 735
H T G + P++I Q+ + + +++ S R H+ +H+PH
Sbjct: 1248 HLQPTVQEKGAVLPQEISQVTESHKSG--FNDHSVR--HQQRKHDPH 1290
Score = 39 (18.8 bits), Expect = 7.6e-84, Sum P(4) = 7.6e-84
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 660 PPVFRSPVASM 670
PPVF P A+M
Sbjct: 1564 PPVFPQPTANM 1574
Score = 39 (18.8 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 271 DGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQ 315
+GS P+ Q V S+ + Q HQR A R K++
Sbjct: 1667 EGS-PASSASSQATQPVSSHVETASQGHVVSHQRSAPSSSRRKSR 1710
Score = 37 (18.1 bits), Expect = 2.3e-40, Sum P(4) = 2.3e-40
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LA S Y S G + G+G+ PH
Sbjct: 914 GYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
>MGI|MGI:891964 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10090 "Mus
musculus" [GO:0000723 "telomere maintenance" evidence=NAS]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0007126 "meiosis" evidence=NAS]
[GO:0007569 "cell aging" evidence=NAS] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 MGI:MGI:891964 GO:GO:0007126 GO:GO:0003677
GO:GO:0003723 GO:GO:0006396 GO:GO:0000932 GO:GO:0000723
GO:GO:0071044 GO:GO:0007569 CTD:54464 eggNOG:COG5049
HOVERGEN:HBG094164 KO:K12618 OrthoDB:EOG49S65H InterPro:IPR027073
PANTHER:PTHR12341 EMBL:D88026 EMBL:X91617 EMBL:AK142311
EMBL:AK162848 EMBL:AK169840 IPI:IPI00129132 IPI:IPI00668938
IPI:IPI00677614 PIR:T30174 PIR:T30175 PIR:T30244 RefSeq:NP_036046.2
UniGene:Mm.291179 ProteinModelPortal:P97789 SMR:P97789
STRING:P97789 PhosphoSite:P97789 PaxDb:P97789 PRIDE:P97789
GeneID:24127 KEGG:mmu:24127 UCSC:uc009rbw.1 UCSC:uc009rbx.1
HOGENOM:HOG000154879 InParanoid:P97789 NextBio:304159
CleanEx:MM_XRN1 Genevestigator:P97789 GermOnline:ENSMUSG00000032410
GO:GO:0004534 Uniprot:P97789
Length = 1719
Score = 450 (163.5 bits), Expect = 4.9e-84, Sum P(4) = 4.9e-84
Identities = 79/182 (43%), Positives = 111/182 (60%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D F + ++D + +K YY K + E + Y + + W++HYYY
Sbjct: 414 DNFEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--EFLANQAACYVQAIQWILHYYY 471
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW W+YPYHYAPF SD++ + I FELG PFKPF QLL V PSAS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQ 531
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERK 591
Query: 597 RN 598
RN
Sbjct: 592 RN 593
Score = 333 (122.3 bits), Expect = 4.9e-84, Sum P(4) = 4.9e-84
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 206 (77.6 bits), Expect = 4.9e-84, Sum P(4) = 4.9e-84
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 43 (20.2 bits), Expect = 4.9e-84, Sum P(4) = 4.9e-84
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 675 GNQVLCAIYKLPDAHKHVTRPPAG 698
GNQ L AI K + H + P+G
Sbjct: 1181 GNQKLTAIVKPQPSVSHCSAAPSG 1204
Score = 37 (18.1 bits), Expect = 4.6e-40, Sum P(4) = 4.6e-40
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LA S Y S G + G+G+ PH
Sbjct: 914 GYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
>UNIPROTKB|Q8IZH2 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005829
GO:GO:0005886 GO:GO:0005794 GO:GO:0010467 GO:GO:0003677
GO:GO:0003723 GO:GO:0045111 GO:GO:0090305 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0043928 GO:GO:0071028
ChiTaRS:XRN1 EMBL:AY137776 EMBL:AL133623 EMBL:BX640905
EMBL:CR627396 EMBL:CR749518 EMBL:BC039314 EMBL:BC048104
EMBL:AK096177 IPI:IPI00328115 IPI:IPI00657645 IPI:IPI00657805
PIR:T43461 RefSeq:NP_001036069.1 RefSeq:NP_061874.3
UniGene:Hs.435103 ProteinModelPortal:Q8IZH2 SMR:Q8IZH2
IntAct:Q8IZH2 STRING:Q8IZH2 PhosphoSite:Q8IZH2 DMDM:74714582
PaxDb:Q8IZH2 PRIDE:Q8IZH2 DNASU:54464 Ensembl:ENST00000264951
Ensembl:ENST00000392981 Ensembl:ENST00000463916 GeneID:54464
KEGG:hsa:54464 UCSC:uc003eus.3 UCSC:uc003euu.3 UCSC:uc003euw.3
CTD:54464 GeneCards:GC03M142025 HGNC:HGNC:30654 HPA:HPA035005
HPA:HPA035006 MIM:607994 neXtProt:NX_Q8IZH2 PharmGKB:PA134878471
eggNOG:COG5049 HOVERGEN:HBG094164 InParanoid:Q8IZH2 KO:K12618
OMA:CKQRKSN OrthoDB:EOG49S65H PhylomeDB:Q8IZH2 GenomeRNAi:54464
NextBio:56731 ArrayExpress:Q8IZH2 Bgee:Q8IZH2 CleanEx:HS_XRN1
Genevestigator:Q8IZH2 GermOnline:ENSG00000114127 InterPro:IPR027073
PANTHER:PTHR12341 Uniprot:Q8IZH2
Length = 1706
Score = 441 (160.3 bits), Expect = 8.0e-84, Sum P(3) = 8.0e-84
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW W+YPYHYAPF SD+ ++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQ 531
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT+ +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERK 591
Query: 597 RN 598
RN
Sbjct: 592 RN 593
Score = 333 (122.3 bits), Expect = 8.0e-84, Sum P(3) = 8.0e-84
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 210 (79.0 bits), Expect = 8.0e-84, Sum P(3) = 8.0e-84
Identities = 43/121 (35%), Positives = 67/121 (55%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF + F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 41 (19.5 bits), Expect = 2.9e-41, Sum P(3) = 2.9e-41
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
>UNIPROTKB|F6XNM6 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:AAEX03013647 Ensembl:ENSCAFT00000012512 Uniprot:F6XNM6
Length = 1702
Score = 443 (161.0 bits), Expect = 2.6e-83, Sum P(3) = 2.6e-83
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 411 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 468
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 469 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 528
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 529 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERK 588
Query: 597 RN 598
RN
Sbjct: 589 RN 590
Score = 333 (122.3 bits), Expect = 2.6e-83, Sum P(3) = 2.6e-83
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKK 234
Score = 203 (76.5 bits), Expect = 2.6e-83, Sum P(3) = 2.6e-83
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 41 (19.5 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LAS S Y S G + G+G+ PH
Sbjct: 911 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 943
Score = 37 (18.1 bits), Expect = 4.0e-40, Sum P(3) = 4.0e-40
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 302 HQRHAERIKRE-KAQARRGDDVEPLAQP 328
H+ ++ E + R D+ EP +QP
Sbjct: 1370 HKNEMKQFGNEVTVSSNRRDEYEPSSQP 1397
>UNIPROTKB|E2R2X2 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 Ensembl:ENSCAFT00000012512
Uniprot:E2R2X2
Length = 1729
Score = 443 (161.0 bits), Expect = 2.7e-83, Sum P(3) = 2.7e-83
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 531
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERK 591
Query: 597 RN 598
RN
Sbjct: 592 RN 593
Score = 333 (122.3 bits), Expect = 2.7e-83, Sum P(3) = 2.7e-83
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKK 234
Score = 203 (76.5 bits), Expect = 2.7e-83, Sum P(3) = 2.7e-83
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 41 (19.5 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 39 (18.8 bits), Expect = 2.6e-40, Sum P(3) = 2.6e-40
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 302 HQRHAERIKRE-KAQARRGDDVEPLAQPDSLVPVSRFHGS 340
H+ ++ E + R D+ EP +QP +++ H +
Sbjct: 1414 HKNEMKQFGNEVTVSSNRRDEYEPSSQPKQTSYMNKPHST 1453
>UNIPROTKB|J9PAD8 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AAEX03013647
Ensembl:ENSCAFT00000047807 Uniprot:J9PAD8
Length = 1730
Score = 443 (161.0 bits), Expect = 2.8e-83, Sum P(3) = 2.8e-83
Identities = 77/182 (42%), Positives = 111/182 (60%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW W+YPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 531
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERK 591
Query: 597 RN 598
RN
Sbjct: 592 RN 593
Score = 333 (122.3 bits), Expect = 2.8e-83, Sum P(3) = 2.8e-83
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKK 234
Score = 203 (76.5 bits), Expect = 2.8e-83, Sum P(3) = 2.8e-83
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 41 (19.5 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 37 (18.1 bits), Expect = 4.3e-40, Sum P(3) = 4.3e-40
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 302 HQRHAERIKRE-KAQARRGDDVEPLAQP 328
H+ ++ E + R D+ EP +QP
Sbjct: 1411 HKNEMKQFGNEVTVSSNRRDEYEPSSQP 1438
>UNIPROTKB|E1C8R7 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071044
"histone mRNA catabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 CTD:54464 KO:K12618
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AADN02024099 IPI:IPI00596046
RefSeq:XP_422596.3 UniGene:Gga.23111 Ensembl:ENSGALT00000004266
GeneID:424778 KEGG:gga:424778 Uniprot:E1C8R7
Length = 1736
Score = 437 (158.9 bits), Expect = 3.0e-83, Sum P(4) = 3.0e-83
Identities = 79/186 (42%), Positives = 113/186 (60%)
Query: 422 DNPEEDKVKLGE-PGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVC 480
D PE+D + E +K YY K + + + D Y + + W++HYYY GV
Sbjct: 417 DEPEDDDLFETEFRQYKRTYYMTKMGIEVVSD--DFLADQAECYVQAIQWILHYYYHGVQ 474
Query: 481 SWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMT 540
SW W+YPYHYAP+ SD++++ + I FELG PF PF QLL V P+AS LP Y+ LM
Sbjct: 475 SWSWYYPYHYAPYLSDIRNISELKIQFELGKPFMPFEQLLAVLPAASKDLLPRCYQHLMV 534
Query: 541 DPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSI 600
+SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ L EEE RRN
Sbjct: 535 SQDSPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKCLKEEEKRRNVH 594
Query: 601 MADMLF 606
A +++
Sbjct: 595 SACLMY 600
Score = 340 (124.7 bits), Expect = 3.0e-83, Sum P(4) = 3.0e-83
Identities = 62/109 (56%), Positives = 81/109 (74%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ I V LS PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK 153
++ P +DPNTRHCLYGLDADLIML L THE HF++LRE V G++ +
Sbjct: 188 EKAKPHHDPNTRHCLYGLDADLIMLGLTTHEAHFALLREEVRFGGKKSQ 236
Score = 210 (79.0 bits), Expect = 3.0e-83, Sum P(4) = 3.0e-83
Identities = 42/121 (34%), Positives = 68/121 (56%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFR-IPNP-PFEIDLECIVDDFIFMCFFVGND 236
+K P++ + LH+ +REY+DYEF + + F+ D+E I+DD+I M F VGND
Sbjct: 233 KKSQRACAPEETTFHLLHLSLMREYIDYEFSPVKDKISFDYDIEKIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L+R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYRTYMAILPELGGYINENGHLNLKRFEKYLTRLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 42 (19.8 bits), Expect = 4.2e-42, Sum P(3) = 4.2e-42
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 319 GDDVEPLAQPDSLV-PVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLS 377
G D+E + S V V G + G + Y+Q++ + N ++G P P L
Sbjct: 1412 GSDLETRNEAKSHVNDVPASPGRQDCHGAALQ-YRQTKKMAAYMNNPHSTGGPQSTPALG 1470
Query: 378 SG 379
+G
Sbjct: 1471 TG 1472
Score = 41 (19.5 bits), Expect = 3.1e-41, Sum P(4) = 3.1e-41
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 342 LASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
LAS S Y S G + G+G+ PH
Sbjct: 916 LASRLGVSGYLVSRFTGSIFIGRGSKKNPH 945
Score = 39 (18.8 bits), Expect = 3.0e-83, Sum P(4) = 3.0e-83
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 622 EHCKQLKI--KERVEVKERLNPELSDGMNGYI 651
E CKQ K K RV VK L + NG +
Sbjct: 1064 EKCKQRKSNKKVRVTVKPHLLYRPLEQQNGVV 1095
>UNIPROTKB|F1SKG4 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:CU914452 EMBL:CU467674 Ensembl:ENSSSCT00000012784
ArrayExpress:F1SKG4 Uniprot:F1SKG4
Length = 1725
Score = 446 (162.1 bits), Expect = 7.7e-83, Sum P(4) = 7.7e-83
Identities = 78/182 (42%), Positives = 111/182 (60%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D + ++D + +K YY K + + D Y + + W++HYYY
Sbjct: 414 DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYY 471
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW WFYPYHYAPF SD++++ I FELG PFKPF QLL V P+AS + LP Y+
Sbjct: 472 HGVQSWSWFYPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQ 531
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERK 591
Query: 597 RN 598
RN
Sbjct: 592 RN 593
Score = 333 (122.3 bits), Expect = 7.7e-83, Sum P(4) = 7.7e-83
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 205 (77.2 bits), Expect = 7.7e-83, Sum P(4) = 7.7e-83
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 41 (19.5 bits), Expect = 9.5e-40, Sum P(4) = 9.5e-40
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 37 (18.1 bits), Expect = 7.7e-83, Sum P(4) = 7.7e-83
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 892 PQGGYSGYQSPAAGSFNQWGGANQS 916
PQ + Y S ++ S GG N S
Sbjct: 1191 PQPAVNHYSSNSSVSSGHLGGLNHS 1215
Score = 37 (18.1 bits), Expect = 2.6e-40, Sum P(3) = 2.6e-40
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 288 GSYEDRIFQKRARLHQRHAERIKREKAQAR 317
G ++ + Q++ H++ E K K ++R
Sbjct: 1274 GFNDNSVKQRKHEPHKKFKEECKSPKTESR 1303
>UNIPROTKB|E1BMZ8 [details] [associations]
symbol:E1BMZ8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:DAAA02002875 EMBL:DAAA02002876 EMBL:DAAA02002877
IPI:IPI00689341 Ensembl:ENSBTAT00000015318 Uniprot:E1BMZ8
Length = 1723
Score = 443 (161.0 bits), Expect = 1.7e-82, Sum P(4) = 1.7e-82
Identities = 76/163 (46%), Positives = 105/163 (64%)
Query: 436 WKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS 495
+K YY K + + D Y + + W++HYYY GV SW WFYPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWFYPYHYAPFLS 490
Query: 496 DLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFE 555
D++++ I FELG PFKPF QLL V P+AS + LP Y+ LMT +SPI ++YP DF+
Sbjct: 491 DIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTSDDSPIIEYYPPDFK 550
Query: 556 VDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRN 598
D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +RN
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN 593
Score = 333 (122.3 bits), Expect = 1.7e-82, Sum P(4) = 1.7e-82
Identities = 59/107 (55%), Positives = 79/107 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
++ P +DPNTRHCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 188 EKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 234
Score = 205 (77.2 bits), Expect = 1.7e-82, Sum P(4) = 1.7e-82
Identities = 43/121 (35%), Positives = 66/121 (54%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGND
Sbjct: 233 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGND 292
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
F+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F
Sbjct: 293 FIPHLPHLHINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFS 352
Query: 297 K 297
+
Sbjct: 353 E 353
Score = 41 (19.5 bits), Expect = 9.4e-40, Sum P(4) = 9.4e-40
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 339 GSRLASGPSPSPYQQSECVGRLDNGKGTSGRPH 371
G LAS S Y S G + G+G+ PH
Sbjct: 914 GYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPH 946
Score = 37 (18.1 bits), Expect = 1.7e-82, Sum P(4) = 1.7e-82
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 892 PQGGYSGYQSPAAGSFNQWGGANQS 916
PQ + Y S ++ S GG N S
Sbjct: 1191 PQPAVNHYSSNSSVSSGHLGGLNHS 1215
>FB|FBgn0020261 [details] [associations]
symbol:pcm "pacman" species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0007369
"gastrulation" evidence=NAS] [GO:0006401 "RNA catabolic process"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0034428 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 5'-3'" evidence=IMP] [GO:0042060
"wound healing" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0046529 "imaginal disc
fusion, thorax closure" evidence=IMP] [GO:0007391 "dorsal closure"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0010603 "regulation of cytoplasmic mRNA processing body
assembly" evidence=IMP] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0016246 GO:GO:0000184
GO:GO:0007391 EMBL:AE014298 GO:GO:0007283 GO:GO:0003676
GO:GO:0042060 GO:GO:0000932 GO:GO:0007476 GO:GO:0008409
GO:GO:0046529 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 RefSeq:NP_001162796.1 UniGene:Dm.7395
PDB:2LYD PDB:2Y35 PDBsum:2LYD PDBsum:2Y35
EnsemblMetazoa:FBtr0302082 GeneID:32935 KEGG:dme:Dmel_CG3291
CTD:32935 FlyBase:FBgn0020261 OMA:FVPIQAY PhylomeDB:E1JJR3
GenomeRNAi:32935 NextBio:781106 Bgee:E1JJR3 GO:GO:0034428
GO:GO:0010603 Uniprot:E1JJR3
Length = 1613
Score = 429 (156.1 bits), Expect = 4.1e-82, Sum P(4) = 4.1e-82
Identities = 81/183 (44%), Positives = 112/183 (61%)
Query: 417 DAFNSDNPEEDKVKLGE-PGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYY 475
D D +E+ V L E +K +Y KF + P + E +++ Y L WV+ YY
Sbjct: 394 DDSEEDCSDENAVLLKEFQNYKRNFYRNKFK-RDPND--ELIEELCHHYVNALQWVLDYY 450
Query: 476 YEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHY 535
Y GV SW W+YP+HY PF SDLK+++Q I+F +G PF PF QLL V P+AS+ LP Y
Sbjct: 451 YRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAY 510
Query: 536 RKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEA 595
LM P SP+++FYP +FE D+NGK++ W+ + +PFIDE RLL + E L+ EE
Sbjct: 511 HDLMLLPTSPLAEFYPLEFESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEER 570
Query: 596 RRN 598
RN
Sbjct: 571 ERN 573
Score = 337 (123.7 bits), Expect = 4.1e-82, Sum P(4) = 4.1e-82
Identities = 61/101 (60%), Positives = 74/101 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFM L L+ ++ +++ DP W++ VILS PGEGEHKIM Y+R
Sbjct: 127 FDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRY 186
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVV 145
+ P YDPNTRHCLYGLDADLI+L L THE+HF +LRE V
Sbjct: 187 MKTQPDYDPNTRHCLYGLDADLIILGLCTHELHFVVLREEV 227
Score = 199 (75.1 bits), Expect = 4.1e-82, Sum P(4) = 4.1e-82
Identities = 44/128 (34%), Positives = 70/128 (54%)
Query: 173 RKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEF-RIPNPPFEIDLECIVDDFIFMCF 231
R+ +F V + + LH+ LREYL+ EF + ++D+ ++DD++ M F
Sbjct: 224 REEVKFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGF 283
Query: 232 FVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYE 291
VGNDF+PH+P L I A+ LL Y + LGG + + K +LRR++ FI A+ E
Sbjct: 284 LVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVE 343
Query: 292 DRIFQKRA 299
F++ A
Sbjct: 344 LDHFKEHA 351
Score = 49 (22.3 bits), Expect = 4.1e-82, Sum P(4) = 4.1e-82
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 850 DRNSSGEHPTHLYNPSGIHQNGGPRYPP 877
+RN G P ++Y S + Q P YPP
Sbjct: 571 ERNRHG--PMYVYKYSTVAQGPMPAYPP 596
Score = 46 (21.3 bits), Expect = 1.3e-25, Sum P(3) = 1.3e-25
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 205 DYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAV 257
D+ + PF DL+ I + + + F +G FLP L + A L+ V
Sbjct: 458 DWYYPFHYTPFISDLKNI--EQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPV 508
Score = 45 (20.9 bits), Expect = 1.1e-81, Sum P(4) = 1.1e-81
Identities = 18/79 (22%), Positives = 31/79 (39%)
Query: 798 YNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSH-HPNRRYHPQYDRNSSGE 856
++ + PR A H+ + P +Q +N H H + Y+P + +
Sbjct: 1408 WHEWVHPRMQHANAFHAGVNNGYQMRPKKNIAAQSTFNNNVHMHLQQPYYPNQQQQQQQQ 1467
Query: 857 HPTHLYNPSGIHQNGGPRY 875
P L + I+ N PRY
Sbjct: 1468 QPLQL---TEIN-NAPPRY 1482
Score = 41 (19.5 bits), Expect = 4.3e-25, Sum P(3) = 4.3e-25
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 715 PVLWHEDSGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQHMK 759
P+L+ G P G N +G ++ R+L L L H K
Sbjct: 304 PLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFK 348
>ZFIN|ZDB-GENE-040426-1203 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease 1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743
ZFIN:ZDB-GENE-040426-1203 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
CTD:54464 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:CU929319 IPI:IPI00498230
RefSeq:NP_957327.2 UniGene:Dr.69803 Ensembl:ENSDART00000125413
GeneID:394008 KEGG:dre:394008 NextBio:20814974 ArrayExpress:F1Q4U5
Bgee:F1Q4U5 Uniprot:F1Q4U5
Length = 1697
Score = 423 (154.0 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 75/184 (40%), Positives = 110/184 (59%)
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 474
+++ D ++D + +K YY K + + E + Y EG+ W++HY
Sbjct: 414 RAEGAEEDGEDDDMFETEFRQYKRTYYMTKMGVEVVSD--EFLANQAKCYVEGIQWILHY 471
Query: 475 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEH 534
YY GV SW W+YPYHYAPF SD++++ +++F+L PF PF QLL V PSAS LP+
Sbjct: 472 YYHGVQSWSWYYPYHYAPFLSDVRNISGLSLTFDLAKPFMPFEQLLAVLPSASKDLLPQC 531
Query: 535 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 594
Y+ LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE LL ++ H LT E
Sbjct: 532 YQHLMTSLSSPIVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTHNLTPSE 591
Query: 595 ARRN 598
RN
Sbjct: 592 KARN 595
Score = 340 (124.7 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 62/109 (56%), Positives = 80/109 (73%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGT+FMA L L+Y++H +L+ D W+ + V LS PGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTDFMARLQEQLKYFVHNKLSTDKTWQGVNVYLSGHETPGEGEHKIMEFIRS 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK 153
+ PG++PNTRHCLYGLDADLIML L +HE HFS+LRE V G++ +
Sbjct: 188 ESTKPGHNPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKSQ 236
Score = 211 (79.3 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 45/128 (35%), Positives = 70/128 (54%)
Query: 173 RKAGEFDEKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFM 229
R G+ +K + P++ + LH+ +REY+DYEF FE DLE I+DD++ M
Sbjct: 229 RFGGKKSQK--RITAPEETTFHLLHLSLMREYIDYEFSELRKKISFEYDLERIIDDWVLM 286
Query: 230 CFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGS 289
F VGNDF+PH+P L I A+ LL Y +LGGYL + +L E +++ +
Sbjct: 287 GFLVGNDFIPHLPHLHINHDALPLLYRTYINVLPSLGGYLNENGHLNLTHFEKYLEKLSD 346
Query: 290 YEDRIFQK 297
++ F +
Sbjct: 347 FDREHFSE 354
Score = 41 (19.5 bits), Expect = 5.0e-82, Sum P(4) = 5.0e-82
Identities = 20/58 (34%), Positives = 21/58 (36%)
Query: 852 NSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQGGYS----GYQSPAAG 905
NS G P G+ Q P P M G L PPQG Y G Q P G
Sbjct: 1522 NSLGSFPLPPPIFPGVQQMR-PLAPHPSMFGQPGGGFLMPPQG-YGPLPWGMQFPHQG 1577
Score = 41 (19.5 bits), Expect = 1.4e-41, Sum P(4) = 1.4e-41
Identities = 15/61 (24%), Positives = 25/61 (40%)
Query: 322 VEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGAT 381
++ L Q V G LAS + Y S G + G+G+ PH +++ G
Sbjct: 896 LDALIQNQHKYSVKYSPGYVLASRLGITGYLVSRFSGSIFIGRGSKKNPHGEQKVNVGLN 955
Query: 382 I 382
+
Sbjct: 956 L 956
>DICTYBASE|DDB_G0276137 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0276137 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 RefSeq:XP_643245.1
ProteinModelPortal:Q75JF5 STRING:Q75JF5 EnsemblProtists:DDB0237529
GeneID:8620288 KEGG:ddi:DDB_G0276137 InParanoid:Q75JF5 OMA:GMPYGAM
Uniprot:Q75JF5
Length = 1749
Score = 374 (136.7 bits), Expect = 8.9e-81, Sum P(4) = 8.9e-81
Identities = 77/171 (45%), Positives = 101/171 (59%)
Query: 440 YYEEKFNA--KTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDL 497
YY + FN T +E + ++ VVL Y EGL WV++YY+ G SW WFYP++YAP A D
Sbjct: 419 YYRQYFNEFPNTLDEIKAFKEKVVLSYVEGLVWVLNYYHNGCISWVWFYPFYYAPLAIDF 478
Query: 498 KDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVD 557
++ +I F+ G P PF QLL V P S +P+ Y+ LM D SPI DFYP +FE+D
Sbjct: 479 NNIPDLHIDFQPGEPITPFQQLLSVLPPQSVDLIPKSYQTLMLDLFSPIIDFYPVEFEID 538
Query: 558 MNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTL--------TEEEARRNSI 600
Y + GIA+L FID RLLD I+ +L T+EE RNSI
Sbjct: 539 TKDPHY-FDGIAELGFIDHQRLLDATASIKKSLAQSGQKVFTDEEEARNSI 588
Score = 296 (109.3 bits), Expect = 8.9e-81, Sum P(4) = 8.9e-81
Identities = 56/113 (49%), Positives = 77/113 (68%)
Query: 44 VFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVR 103
+F+ ITPGT+FM LS ++Q+YI +++ D W +++VI S PGEGEHKI+ Y+R
Sbjct: 125 IFNRTAITPGTQFMYNLSESIQFYIKKKISEDLSWREVRVIFSGPENPGEGEHKIIDYIR 184
Query: 104 LQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVV-FTPGQQDKCF 155
+ P +D N HCLYGLDADLI+L L THE +FSILRE + F P ++ F
Sbjct: 185 KNKASPDWDANQSHCLYGLDADLILLGLITHEPNFSILREEISFKPTKRQLDF 237
Score = 260 (96.6 bits), Expect = 8.9e-81, Sum P(4) = 8.9e-81
Identities = 49/102 (48%), Positives = 67/102 (65%)
Query: 192 YQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAI 251
+Q LHI LREYLD E R + F DLE I+DDFI + F GNDFLPH+P LEI +G +
Sbjct: 237 FQLLHISLLREYLDLELRNDDLEFGYDLERIIDDFILIMIFFGNDFLPHLPFLEISKGGL 296
Query: 252 NLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDR 293
N + +YK +LGGYLT+G+ L R++HF + + +E +
Sbjct: 297 NSIFELYKSSLPSLGGYLTEGATIDLERLQHFFKFLQKFEKK 338
Score = 78 (32.5 bits), Expect = 8.9e-81, Sum P(4) = 8.9e-81
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 794 YDQGYNRFSQPRTDSYP-AGHSQSSIS---AAQPPY--DGGYSQHYASNTSHHPNRRYHP 847
+ G N +Q + + +P A ++ +S++ +P Y Q YA + ++PN Y+
Sbjct: 1323 HHHGQNH-NQNKVNQHPLAINNPNSVNYPMKRKPTYVKQNFEQQEYADLSKNYPNLEYNF 1381
Query: 848 QYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRP 879
YD+N + P L P Q P+ P+P
Sbjct: 1382 YYDQNDQRKQPQQLQQPKP-QQQPQPQPQPQP 1412
Score = 76 (31.8 bits), Expect = 1.4e-80, Sum P(4) = 1.4e-80
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 823 PPYDGGYSQHYASN---TSHHPNRR---YHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYP 876
PP+ GY HY HHP ++ +H Q + +HPT P+ + P+ P
Sbjct: 1564 PPHMMGYPPHYHPGHPYPPHHPGQQEEHHHHQQQQQEQQQHPTQQEQPNQHPKKKQPKQP 1623
Query: 877 PRP 879
P
Sbjct: 1624 KLP 1626
Score = 61 (26.5 bits), Expect = 5.3e-79, Sum P(4) = 5.3e-79
Identities = 26/80 (32%), Positives = 29/80 (36%)
Query: 823 PPYDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGS 882
PP+ G HY P Y P Y HP H Y P H G YPP P
Sbjct: 1520 PPHMMG---HYPPGPP--PMMGYPPHY-------HPGHSYPPPPPHMMGN--YPPGPPPP 1565
Query: 883 TSSGANLYPPQGGYSGYQSP 902
G YPP + G+ P
Sbjct: 1566 HMMG---YPPHY-HPGHPYP 1581
Score = 57 (25.1 bits), Expect = 1.4e-78, Sum P(4) = 1.4e-78
Identities = 10/49 (20%), Positives = 26/49 (53%)
Query: 821 AQPPYDGGYSQHYASNTSHHPNRRYHPQ-YDRNSSGEHPTHLYNPSGIH 868
+ P + + +N +++ N +H Q +++N +HP + NP+ ++
Sbjct: 1300 SNPQQHNANNNNNNNNYNNNNNNHHHGQNHNQNKVNQHPLAINNPNSVN 1348
Score = 49 (22.3 bits), Expect = 9.5e-78, Sum P(4) = 9.5e-78
Identities = 20/107 (18%), Positives = 34/107 (31%)
Query: 789 QEYGVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPPYDGGYSQHYASNTSHHPNR--RYH 846
Q++ + N+ + + P Q + + QP DG Q +PN+ +
Sbjct: 1602 QQHPTQQEQPNQHPKKKQPKQPKLPKQPNQNQTQPTQDGQQQQPPKQPKQPNPNQTPKQP 1661
Query: 847 PQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTSSGANLYPPQ 893
Q + P P Q P P +P + P Q
Sbjct: 1662 AQPKQTKQPAQPKQPAQPKQAAQTKQPAQPKQPAQPKQAAQTKQPKQ 1708
>SGD|S000003141 [details] [associations]
symbol:XRN1 "Evolutionarily-conserved 5'-3' exonuclease
component of cytoplasmic p" species:4932 "Saccharomyces cerevisiae"
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA;TAS]
[GO:0006364 "rRNA processing" evidence=IEA;TAS] [GO:0004536
"deoxyribonuclease activity" evidence=TAS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000741 "karyogamy" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 SGD:S000003141 GO:GO:0005829 GO:GO:0048471
GO:GO:0000184 EMBL:BK006941 GO:GO:0003723 GO:GO:0000932
GO:GO:0000956 GO:GO:0005874 GO:GO:0004536 GO:GO:0006364
GO:GO:0007089 GO:GO:0000741 EMBL:X84705 GO:GO:0070651
Reactome:REACT_83470 eggNOG:COG5049 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000160331
OrthoDB:EOG4PP1R0 EMBL:M90097 EMBL:X54717 EMBL:M58367 EMBL:M36725
EMBL:X61181 EMBL:Z72695 PIR:S13743 RefSeq:NP_011342.1
ProteinModelPortal:P22147 SMR:P22147 DIP:DIP-656N IntAct:P22147
MINT:MINT-414332 STRING:P22147 PaxDb:P22147 PeptideAtlas:P22147
EnsemblFungi:YGL173C GeneID:852702 KEGG:sce:YGL173C CYGD:YGL173c
GeneTree:ENSGT00670000098080 OMA:NIFAYIE Reactome:REACT_78815
NextBio:972050 Genevestigator:P22147 GermOnline:YGL173C
Uniprot:P22147
Length = 1528
Score = 411 (149.7 bits), Expect = 6.6e-78, Sum P(4) = 6.6e-78
Identities = 75/172 (43%), Positives = 104/172 (60%)
Query: 436 WKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS 495
WK YY +K T + EE +D+ Y EGL WV++YYY G SW W+YP+HYAP S
Sbjct: 511 WKHEYYHDKLKFTT--DSEEKVRDLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRIS 568
Query: 496 DL-KDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDF 554
DL K LDQ +I F+L PF PF QL+ V P S + +P +R LM D SPI DFYP +
Sbjct: 569 DLAKGLDQ-DIEFDLSKPFTPFQQLMAVLPERSKNLIPPAFRPLMYDEQSPIHDFYPAEV 627
Query: 555 EVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLF 606
++D NGK W+ + + F+DE RL++ ++ L+ EE RN D+++
Sbjct: 628 QLDKNGKTADWEAVVLISFVDEKRLIEAMQPYLRKLSPEEKTRNQFGKDLIY 679
Score = 329 (120.9 bits), Expect = 6.6e-78, Sum P(4) = 6.6e-78
Identities = 63/115 (54%), Positives = 87/115 (75%)
Query: 38 PKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHK 97
PK + FDSN ITPGTEFMA L+ LQY+IH +++ND W ++++I S VPGEGEHK
Sbjct: 123 PKGEP--FDSNSITPGTEFMAKLTKNLQYFIHDKISNDSKWREVQIIFSGHEVPGEGEHK 180
Query: 98 IMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQD 152
IM+++R ++ ++ NTRHC+YGLDADLIML L+TH HF++LRE V T G+++
Sbjct: 181 IMNFIRHLKSQKDFNQNTRHCIYGLDADLIMLGLSTHGPHFALLREEV-TFGRRN 234
Score = 187 (70.9 bits), Expect = 6.6e-78, Sum P(4) = 6.6e-78
Identities = 38/108 (35%), Positives = 66/108 (61%)
Query: 192 YQFLHIWTLREYLDYEFR-IPNP-PFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREG 249
+ LH+ LREY++ EF+ I + FE + E I+DDFI + F +GNDFLP++P L + +G
Sbjct: 245 FYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLHLNKG 304
Query: 250 AINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 297
A +L+ +K+ GY+ + K +L+R+ ++ + +E F+K
Sbjct: 305 AFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEK 352
Score = 47 (21.6 bits), Expect = 6.6e-78, Sum P(4) = 6.6e-78
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 847 PQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMG 881
P + + +G HP H + + NG PP P G
Sbjct: 1403 PGFMTHPNGLHPLHPHQMPYPNMNGMSIPPPAPHG 1437
Score = 43 (20.2 bits), Expect = 8.3e-39, Sum P(5) = 8.3e-39
Identities = 18/65 (27%), Positives = 30/65 (46%)
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKF-NAKTPEEREETRKDVVLRYTEGL-CWVM 472
K D +S NP+E + + R +K+ NA E++EE + + Y E W
Sbjct: 456 KMD-LDSINPDETEEEFQNRVNSIRKTIKKYQNAIIVEDKEELETEKTI-YNERFERWKH 513
Query: 473 HYYYE 477
YY++
Sbjct: 514 EYYHD 518
Score = 42 (19.8 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 715 PVLWHEDSGRRPHENGRHNPHGTISGRQLG 744
PVL H +G N HG I+ ++LG
Sbjct: 307 PVLLQTFKEALLHTDGYINEHGKINLKRLG 336
Score = 41 (19.5 bits), Expect = 8.3e-39, Sum P(5) = 8.3e-39
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 544 SPISDFYPTDFEVD--MN-GKRYSWQGIAKLPFIDEARLLDEV 583
SP D+YP V+ +N +RY +G +P +E L +V
Sbjct: 889 SPTPDYYPLQLVVESVVNEDERYKERG--PIPIEEEFPLNSKV 929
Score = 41 (19.5 bits), Expect = 9.2e-39, Sum P(4) = 9.2e-39
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 625 KQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSP 666
K+L +K++ ++ + P L + + +SP D P P
Sbjct: 380 KKLLVKQQKKLIGSIKPWLMEQLQEKLSPDLPDEEIPTLELP 421
>WB|WBGene00012730 [details] [associations]
symbol:xrn-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0016246 GO:GO:0003676
GO:GO:0005622 GO:GO:0008409 EMBL:AL032634 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
OMA:NIFAYIE RefSeq:NP_496945.3 UniGene:Cel.6888
ProteinModelPortal:Q9BHK7 SMR:Q9BHK7 STRING:Q9BHK7 PaxDb:Q9BHK7
EnsemblMetazoa:Y39G8C.1 GeneID:175059 KEGG:cel:CELE_Y39G8C.1
UCSC:Y39G8C.1 CTD:175059 WormBase:Y39G8C.1 HOGENOM:HOG000021950
InParanoid:Q9BHK7 NextBio:886590 Uniprot:Q9BHK7
Length = 1591
Score = 404 (147.3 bits), Expect = 8.2e-78, Sum P(3) = 8.2e-78
Identities = 76/165 (46%), Positives = 100/165 (60%)
Query: 437 KERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASD 496
K+ YY +K K +++ R+ Y + W +HYYY G SW WFYP+HYAPF SD
Sbjct: 496 KKTYYSDKLRYKNIS-KQQLREQAE-GYVRAIQWNLHYYYHGCVSWSWFYPHHYAPFISD 553
Query: 497 LKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMT-DP-NSPISDFYPTDF 554
++ + FEL PF PF QLL V P AS+ LP R+LM+ DP SPI DFYP +F
Sbjct: 554 VRGFVGMRMEFELSEPFHPFEQLLAVLPEASADCLPRPLRELMSSDPAKSPICDFYPANF 613
Query: 555 EVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNS 599
E D+NGKR W+ + +PFI+E RLL+ ++ LT EE RNS
Sbjct: 614 ETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEENARNS 658
Score = 310 (114.2 bits), Expect = 8.2e-78, Sum P(3) = 8.2e-78
Identities = 60/101 (59%), Positives = 71/101 (70%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGT FM L L +I + D W+ K+ILS NVPGEGEHKIM ++R
Sbjct: 128 FDSNCITPGTYFMTRLHQKLDDWIKTKSATDSRWQGRKIILSGHNVPGEGEHKIMDFIRT 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVV 145
+R YDPNTRHC+YGLDADLIML + +HE HFS+LRE V
Sbjct: 188 ERAGSSYDPNTRHCMYGLDADLIMLGIVSHEPHFSLLREEV 228
Score = 214 (80.4 bits), Expect = 8.2e-78, Sum P(3) = 8.2e-78
Identities = 52/144 (36%), Positives = 79/144 (54%)
Query: 170 KAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFR-IPNP-PFEIDLECIVDDFI 227
K KA + ++ D V K + LH+ LREYL +EF + + PFE ++E IVDD+I
Sbjct: 236 KNDNKATKKPKRTDSDV---KKFHLLHLSLLREYLAWEFADVKDSLPFEYEMERIVDDWI 292
Query: 228 FMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAV 287
+ VGNDFLPH+P + I + A+ LL + YKK L GY+ + +L R E F+ +
Sbjct: 293 LLGLLVGNDFLPHLPNIHIHDDALPLLYSTYKKVLPTLDGYINEAGYLNLSRFEAFLAEL 352
Query: 288 GSYEDRIFQKRARLHQ-RHAERIK 310
+ F +R Q ++RI+
Sbjct: 353 ALNDKTSFMERLEDEQFMESKRIR 376
Score = 41 (19.5 bits), Expect = 4.0e-22, Sum P(2) = 4.0e-22
Identities = 20/99 (20%), Positives = 34/99 (34%)
Query: 278 RRVEHFIQAVGSYEDRIFQKRARLHQRHAER-------IKREKAQA--RRGDDVEPLAQP 328
+R H + ++ +R HQR + + KR + + +D P A P
Sbjct: 1495 KRANH--PTLTDFKPSAVHRRQNCHQRPSNQPPKVTMITKRTSSPTPPEKEEDAAPRALP 1552
Query: 329 DSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTS 367
S P S+ + P +QS N +S
Sbjct: 1553 SSPPPPSKSAAEEKTTTKKPRKKKQSRLGSNFSNPTASS 1591
>ASPGD|ASPL0000014026 [details] [associations]
symbol:AN11052 species:162425 "Emericella nidulans"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 EMBL:BN001302
GO:GO:0008409 OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
EnsemblFungi:CADANIAT00004228 Uniprot:C8V746
Length = 1398
Score = 461 (167.3 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
Identities = 83/171 (48%), Positives = 110/171 (64%)
Query: 436 WKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS 495
WK++YY EKF + EE RK + Y +GL WV+ YYY G+ SW WF+ HYAP S
Sbjct: 508 WKDKYYMEKFGWGL-DNHEEMRK-LTENYVQGLQWVLFYYYRGIASWPWFFNSHYAPMIS 565
Query: 496 DLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFE 555
D+K +++F LG PF+P++QL+GV P S +P+ Y LM+ P+SPI DFYP DFE
Sbjct: 566 DVKKGLNADMNFRLGRPFRPYDQLMGVLPDRSKKIVPKAYHDLMSSPDSPIIDFYPRDFE 625
Query: 556 VDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLF 606
+DMNGK+ W+ + K+PFIDE RLLD + EH LT EE RN + F
Sbjct: 626 LDMNGKKMEWEAVVKIPFIDERRLLDALATREHLLTPEEKARNGFGVSLKF 676
Score = 366 (133.9 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
Identities = 92/220 (41%), Positives = 127/220 (57%)
Query: 38 PKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHK 97
PK D FDSN ITPGTEFMA L+ L+Y+I +++ D W+ ++++LS VPGEGEHK
Sbjct: 123 PKEDP--FDSNCITPGTEFMAKLTEQLKYFISKKISEDKDWQGVEIVLSGHEVPGEGEHK 180
Query: 98 IMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCF- 155
IM Y+R + PGYDPN RHCLYGLDADLIML L +H+ HF +LRE V F Q K
Sbjct: 181 IMEYIRHAKAQPGYDPNVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQVQKKPKE 240
Query: 156 LCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNP-- 213
L Q +L C + + EF E +E ++ PY+F + + +++ F + N
Sbjct: 241 LEHQNFYLLHLCMVREYLQL-EFQELEEEGIIDF-PYEFERV--IDDFILMAFFVGNDFL 296
Query: 214 PFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINL 253
P +L I + + + F V + LP M +G INL
Sbjct: 297 PNLPNLH-INEGALSLMFKVYKEVLPKMGGYINEQGTINL 335
Score = 215 (80.7 bits), Expect = 4.3e-57, Sum P(2) = 4.3e-57
Identities = 50/147 (34%), Positives = 79/147 (53%)
Query: 192 YQFLHIWTLREYLDYEFRIPNPP----FEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIR 247
+ LH+ +REYL EF+ F + E ++DDFI M FFVGNDFLP++P L I
Sbjct: 246 FYLLHLCMVREYLQLEFQELEEEGIIDFPYEFERVIDDFILMAFFVGNDFLPNLPNLHIN 305
Query: 248 EGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAE 307
EGA++L+ VYK+ +GGY+ + +L+R+ + A+ E R F+ +++
Sbjct: 306 EGALSLMFKVYKEVLPKMGGYINEQGTINLQRLGVLLDALSHVEYRFFEAE------YSD 359
Query: 308 RI-KREKAQARRGDDVEPLAQPDSLVP 333
R K A G DV+ + ++ P
Sbjct: 360 ATWMRAKQSADNGADVDAKPKTFTVTP 386
Score = 45 (20.9 bits), Expect = 9.0e-29, Sum P(2) = 9.0e-29
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 536 RKLMTDPNSPISDFYPTDFEVDMNGKRYSW------QGIAKLPFIDEARLLDEVKKIE 587
R D P +DFYP D +D + +W + ++P E D VK IE
Sbjct: 1057 RNPRNDRYQP-TDFYPPDIALDKINEIKAWLKEIESKNFERVPLEAEQLDSDVVKLIE 1113
>GENEDB_PFALCIPARUM|PF11_0074 [details] [associations]
symbol:PF11_0074 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159
PROSITE:PS50817 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
EMBL:AE014186 GO:GO:0016539 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 305 (112.4 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 433 EPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAP 492
E +K+ YY KF + P+E + ++V +Y EGL W +HYY+ G SW W YPYHYAP
Sbjct: 565 EQKYKKYYYLHKFGLEDPKEIQ----NIVKKYIEGLFWNLHYYHFGCASWYWEYPYHYAP 620
Query: 493 FASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPT 552
SDL ++ + FE G P+ F L+ V P + LP+ Y+ + + + F+P
Sbjct: 621 LCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDE--VKSFFPE 678
Query: 553 DFEVDMNGKRYSWQGIAKLPFID 575
+ ++D NGK+ +W+ I LPFI+
Sbjct: 679 NVKIDPNGKKETWEYIVHLPFIN 701
Score = 197 (74.4 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 42 SQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSY 101
S +F+ N IT GT+FM ++++L + + L +E VI S ++V GEGEHKI+ Y
Sbjct: 159 SNLFNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVFE-FDVIFSGSDVAGEGEHKILKY 216
Query: 102 VRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE 143
+R N HC+YGLDADLIML+L TH + ILR+
Sbjct: 217 IRENCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRD 258
Score = 148 (57.2 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 222 IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 281
+VDD +F+ F VGNDFLPH+P ++I EG++N ++ Y Y+T K + R++
Sbjct: 477 VVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYIYKYSNYITYKDKVHIERLK 536
Query: 282 HFIQAVGSYEDRIFQKRARLHQRHAERIKREK 313
++ + + E F+KR +++ +E +K
Sbjct: 537 IILKILSAQEFEYFKKRG-INENISEFTDEQK 567
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 634 EVKERLNPELSDGMNGYIS 652
E+ + +N E+++G+N I+
Sbjct: 360 EINDEINKEINNGINNGIN 378
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 634 EVKERLNPELSDGMNGYISPCAG 656
E+ +N E+++G+N I+ G
Sbjct: 384 EINNEINNEINNGINNEINNSEG 406
>UNIPROTKB|Q8IIU0 [details] [associations]
symbol:PF11_0074 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159 PROSITE:PS50817
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 EMBL:AE014186
GO:GO:0016539 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 305 (112.4 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 54/143 (37%), Positives = 83/143 (58%)
Query: 433 EPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAP 492
E +K+ YY KF + P+E + ++V +Y EGL W +HYY+ G SW W YPYHYAP
Sbjct: 565 EQKYKKYYYLHKFGLEDPKEIQ----NIVKKYIEGLFWNLHYYHFGCASWYWEYPYHYAP 620
Query: 493 FASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPT 552
SDL ++ + FE G P+ F L+ V P + LP+ Y+ + + + F+P
Sbjct: 621 LCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDE--VKSFFPE 678
Query: 553 DFEVDMNGKRYSWQGIAKLPFID 575
+ ++D NGK+ +W+ I LPFI+
Sbjct: 679 NVKIDPNGKKETWEYIVHLPFIN 701
Score = 197 (74.4 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 44/102 (43%), Positives = 62/102 (60%)
Query: 42 SQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSY 101
S +F+ N IT GT+FM ++++L + + L +E VI S ++V GEGEHKI+ Y
Sbjct: 159 SNLFNPNCITTGTDFMYKINLSLNKWFKI-LKKKKVFE-FDVIFSGSDVAGEGEHKILKY 216
Query: 102 VRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILRE 143
+R N HC+YGLDADLIML+L TH + ILR+
Sbjct: 217 IRENCKRDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRD 258
Score = 148 (57.2 bits), Expect = 8.7e-50, Sum P(3) = 8.7e-50
Identities = 29/92 (31%), Positives = 53/92 (57%)
Query: 222 IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 281
+VDD +F+ F VGNDFLPH+P ++I EG++N ++ Y Y+T K + R++
Sbjct: 477 VVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYIYKYSNYITYKDKVHIERLK 536
Query: 282 HFIQAVGSYEDRIFQKRARLHQRHAERIKREK 313
++ + + E F+KR +++ +E +K
Sbjct: 537 IILKILSAQEFEYFKKRG-INENISEFTDEQK 567
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 634 EVKERLNPELSDGMNGYIS 652
E+ + +N E+++G+N I+
Sbjct: 360 EINDEINKEINNGINNGIN 378
Score = 41 (19.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 634 EVKERLNPELSDGMNGYISPCAG 656
E+ +N E+++G+N I+ G
Sbjct: 384 EINNEINNEINNGINNEINNSEG 406
>DICTYBASE|DDB_G0289921 [details] [associations]
symbol:DDB_G0289921 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004859
InterPro:IPR012677 Pfam:PF00076 Pfam:PF03159 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0289921 Pfam:PF06201 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AAFI02000149
GO:GO:0004527 InterPro:IPR008979 SUPFAM:SSF49785
Gene3D:2.60.120.470 InterPro:IPR010400 PROSITE:PS51532
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 KO:K12619
RefSeq:XP_635977.1 ProteinModelPortal:Q54GU2
EnsemblProtists:DDB0188640 GeneID:8627392 KEGG:ddi:DDB_G0289921
InParanoid:Q54GU2 OMA:MDADLIF Uniprot:Q54GU2
Length = 1235
Score = 274 (101.5 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 66/205 (32%), Positives = 103/205 (50%)
Query: 420 NSDNPEEDKVKLGEPGWKER---YYEEKFN--AKTPEEREETRKDVVLRYTEGLCWVMHY 474
NS + E + + P +K YY KF+ K ++ ++ D+ +YT GL WV+ Y
Sbjct: 748 NSTSNESSSIVMVPPEFKYDDLLYYRVKFDLIGKPDDQVKKLVDDMCYQYTLGLHWVLRY 807
Query: 475 YYEGVCSWQWFYPYHYAPFASDL----------KDLDQFN--ISFELGHPFKPFNQLLGV 522
Y G +W W+YPYHYAP A DL +D + N +F+L P P L V
Sbjct: 808 YVSGCQAWDWYYPYHYAPLAKDLLNYQKRLSKIQDREMVNNQFNFKLSSPLPPLIHLASV 867
Query: 523 FPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDE 582
P S LP+ + ++ + NSP + Y D++ D NG+ +W+ I L F+D + +
Sbjct: 868 LPRNSVAFLPDSMKHIVNE-NSPFTASYRDDYKYDFNGENVAWKAIVLLDFMDIEKFKEY 926
Query: 583 VKKI-EHTLTEEEARRNSIMADMLF 606
+ I + LT+ E +RN I D+ F
Sbjct: 927 LLPIVNNELTDNEKKRNLIGNDIKF 951
Score = 219 (82.2 bits), Expect = 3.7e-37, Sum P(2) = 3.7e-37
Identities = 58/154 (37%), Positives = 77/154 (50%)
Query: 42 SQVFDSNVITPGTEFMAVLSIALQYYI-HLRLNNDPGWEKIKVILSDANVPGEGEHKIMS 100
S +FDSN I+P TEF+ + ++ Y L L + + +ILSD+ VPGEGEHKIM
Sbjct: 162 SLIFDSNSISPATEFIEKVDDWIKDYCKQLSLKR----QNLSIILSDSTVPGEGEHKIMD 217
Query: 101 YVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLC-GQ 159
Y+R + D HC YG+DADLI L L +H +F ILR+ P C C
Sbjct: 218 YIRQNHPILKKD-GMSHCFYGMDADLIFLGLESHLSNFYILRD----PISLISCSTCKAN 272
Query: 160 PGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQ 193
H C K +F +K V+V P Q
Sbjct: 273 DDHSNYECRSAIALKK-QFQKKSTSVIVRGIPNQ 305
Score = 151 (58.2 bits), Expect = 5.0e-30, Sum P(2) = 5.0e-30
Identities = 45/167 (26%), Positives = 83/167 (49%)
Query: 97 KIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFL 156
+I+ ++Q+ L +DPNT D + L L++ V+ + ++F + L
Sbjct: 538 RIIKDSKIQQVLAKFDPNTPK-----DVAIFYLGLSSWNVNRAFENYLLFNKAGLEHTIL 592
Query: 157 CGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEF--RIPNPP 214
+ N G K +K K + +++I + R YL+Y F +I
Sbjct: 593 NNTTDNDNNNSNGSGSGK-----KK-------KILFDYVNIDSFRTYLEYYFFEKIEKSK 640
Query: 215 FE-IDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKK 260
E I+ +++DF +CF++GNDFLPH+P++ I+ G+I L+M Y++
Sbjct: 641 REKINFNRVINDFTVLCFYLGNDFLPHLPSVGIQSGSIELIMCWYRE 687
>UNIPROTKB|C9JCZ8 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] InterPro:IPR004859
Pfam:PF03159 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00979282 ProteinModelPortal:C9JCZ8 SMR:C9JCZ8
STRING:C9JCZ8 Ensembl:ENST00000477237 ArrayExpress:C9JCZ8
Bgee:C9JCZ8 Uniprot:C9JCZ8
Length = 165
Score = 274 (101.5 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 48/95 (50%), Positives = 68/95 (71%)
Query: 57 MAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTR 116
MA L L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPNTR
Sbjct: 1 MARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTR 60
Query: 117 HCLYGLDADLIMLALATHEVHFSILREVVFTPGQQ 151
HCLYGLDADLIML L +HE HFS+LRE V G++
Sbjct: 61 HCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKK 95
Score = 158 (60.7 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 180 EKGDEVVVPKKP-YQFLHIWTLREYLDYEFRIPNPP--FEIDLECIVDDFIFMCFFVGND 236
+K V P++ + LH+ +REY+DYEF + F+ D+E I+DD+I M F VGND
Sbjct: 94 KKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGND 153
Query: 237 FLPHMPTLEI 246
F+PH+P L I
Sbjct: 154 FIPHLPHLHI 163
>UNIPROTKB|Q4KGS2 [details] [associations]
symbol:PFL_1433 "Putative lipoprotein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:CP000076 GenomeReviews:CP000076_GR RefSeq:YP_258561.1
GeneID:3475781 KEGG:pfl:PFL_1433 PATRIC:19872079
HOGENOM:HOG000132442 OMA:TYVERTE ProtClustDB:CLSK838620
BioCyc:PFLU220664:GIX8-1440-MONOMER Uniprot:Q4KGS2
Length = 131
Score = 100 (40.3 bits), Expect = 0.00041, P = 0.00041
Identities = 32/103 (31%), Positives = 43/103 (41%)
Query: 816 SSISAAQPPYDGGYSQHYASNTSHHPNRRYH----PQYDRNSSGEHPTHLYNPSGIHQNG 871
SS++A P Y GG S +Y+S P Y+ Y +P Y P+ +
Sbjct: 13 SSLAACAPYYGGG-SGYYSSEVYSAPAPAYYYGGGSSYYSTGRSYYPPRYYQPAPRYYQS 71
Query: 872 GPRY--PPRPMGSTSSGANLYPPQGGYSGYQSPAAGSFNQWGG 912
PRY PPR + YP QG + G+ P S WGG
Sbjct: 72 APRYYQPPRAVYRP------YPNQG-WGGHGRPNNWSNQDWGG 107
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1010 877 0.00085 122 3 11 22 0.42 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 621 (66 KB)
Total size of DFA: 483 KB (2224 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 82.99u 0.15s 83.14t Elapsed: 00:00:04
Total cpu time: 83.00u 0.15s 83.15t Elapsed: 00:00:04
Start: Mon May 20 23:41:48 2013 End: Mon May 20 23:41:52 2013