BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001806
(1010 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FQD|A Chain A, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
Length = 899
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 276/735 (37%), Positives = 386/735 (52%), Gaps = 92/735 (12%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
+DSN ITPGT F L+ +L+YYI +LN+DP W ++ ILSDA+VPGEGEHKI ++R
Sbjct: 160 WDSNCITPGTPFXDTLAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIXEFIRS 219
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLA 164
QR P YDPNT H +YGLDADLI L LATHE HF +LRE VF Q G
Sbjct: 220 QRVKPEYDPNTHHVVYGLDADLIXLGLATHEPHFRVLREDVFF-----------QQGSTK 268
Query: 165 ANCEGKAKRKAGEFDEKGDEVVVP-KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIV 223
E + K D+ + VP KKP+ +L++ LREYL+ E +PN PF DLE +
Sbjct: 269 KTKEERLGIK--RLDDVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAI 326
Query: 224 DDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHF 283
DD++F FFVGNDFLPH+P+L+IR+GA+ L +++ GGYLT +L R E
Sbjct: 327 DDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRASLPHXGGYLTLDGSVNLARAEVI 386
Query: 284 IQAVGSYEDRIF----QKRARLHQRHAERIKREKAQARRG--DDV--------------- 322
+ AVG+ ED IF Q+ R ++ + R +RE Q D+V
Sbjct: 387 LSAVGNQEDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVT 446
Query: 323 ------------EPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRP 370
+ + D+ PV + S S S + R N G S
Sbjct: 447 SSKSTSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNRSLGATNRELINNRAANRLGLSREA 506
Query: 371 HKVPRLS--SGATIGAAIVEAE--------------------NSFETDPQXXXXXXXXXX 408
V ++ + + + A +V E +S E+
Sbjct: 507 AAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVS 566
Query: 409 XXXXRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGL 468
+ K+ +N D V+L EPG++ERYYE+KF+ +P+E E+ R + V Y GL
Sbjct: 567 NVGQKRKAPDSTEENENTDTVRLYEPGYRERYYEQKFHI-SPDEPEKIR-EAVKHYVHGL 624
Query: 469 CWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASS 528
CWV+ YYY+G SW W+YPYHYAPFA+D KDL ++ FEL PFKP+ QLLGV P+AS
Sbjct: 625 CWVLLYYYQGCPSWTWYYPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASK 684
Query: 529 HALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEH 588
+ LPE + L TD NS I DFYP +F +D+NGK++ WQG+A LPFIDE RLL+ V KI
Sbjct: 685 NNLPEKLQTLXTDENSEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYP 744
Query: 589 TLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMN 648
LTEEE++RN + +LF+ HP E KQL K+R +L+ + + G+
Sbjct: 745 QLTEEESKRNEDGSTLLFISEHHP------XFSELVKQLYSKKRQGKPLKLSGKXAHGLF 798
Query: 649 GYISP-----------CAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAH-KHVTRPP 696
G ++ C D S++D NQ + ++++P +H H +
Sbjct: 799 GKVNTNDSVIPNVSVQCPIDVTSADALQKYGSIDD---NQSISLVFEVPKSHFVHKSXLL 855
Query: 697 AGVIFPKKIVQLEDL 711
GV P +++ ED+
Sbjct: 856 RGVKXPNRVLTPEDI 870
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 150/257 (58%), Gaps = 34/257 (13%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFMA L+ L+Y+IH ++ ND W+ +KVI S VPGEG+HKIM Y+R
Sbjct: 128 FDSNAITPGTEFMAKLTENLKYFIHDKITNDTRWQNVKVIFSGHEVPGEGQHKIMDYIRA 187
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLA 164
R Y+PNTRHC+YGLDADLI+L L+TH+ HF +LRE V
Sbjct: 188 IRAQEDYNPNTRHCIYGLDADLIILGLSTHDHHFCLLREEV------------------- 228
Query: 165 ANCEGKAKRKAGEFDEKGDEV-VVPKKPYQFLHIWTLREYLDYEFR--IPNPPFEIDLEC 221
F ++ V + + + LH+ LREYL EF + FE D E
Sbjct: 229 ------------TFGKRSSSVKTLETQNFFLLHLSILREYLALEFEEITDSVQFEYDFER 276
Query: 222 IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 281
++DDFIF+ F +GNDFLP++P L +++GA +L+ +K+ + + GY+ + K +L R
Sbjct: 277 VLDDFIFVLFTIGNDFLPNLPDLHLKKGAFPVLLQTFKEALQHMDGYINEQGKINLARFS 336
Query: 282 HFIQAVGSYEDRIFQKR 298
+++ + +E F+K+
Sbjct: 337 IWLKYLSDFEYLNFEKK 353
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 436 WKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFAS 495
WK++YY++K + + ++ K++ Y GL WV++YYY G SW W+Y YHYAP S
Sbjct: 491 WKDQYYKDKLDFSINDT--DSLKEMTENYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRIS 548
Query: 496 D-LKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDF 554
D +K +DQ NI F G PFKPF QL+ V P S + +P YR LM D +SPI DFYP +
Sbjct: 549 DVIKGIDQ-NIEFHKGQPFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFYPNEV 607
Query: 555 EVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVL 608
E+D+NGK W+ + K+ F+D+ RL++ + + L+ +E +RNS D++F+
Sbjct: 608 ELDLNGKTADWEAVVKISFVDQKRLVEAMAPYDAKLSPDEKKRNSFGTDLIFIF 661
>pdb|2Y35|A Chain A, Crystal Structure Of Xrn1-Substrate Complex
Length = 1140
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/256 (40%), Positives = 141/256 (55%), Gaps = 32/256 (12%)
Query: 45 FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRL 104
FDSN ITPGTEFM L L+ ++ +++ DP W++ VILS PGEGEHKIM Y+R
Sbjct: 127 FDSNCITPGTEFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRY 186
Query: 105 QRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLA 164
+ P YDPNTRHCLYGLDA LI+L L THE+HF +LRE V
Sbjct: 187 MKTQPDYDPNTRHCLYGLDAALIILGLCTHELHFVVLREEV------------------- 227
Query: 165 ANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEF-RIPNPPFEIDLECIV 223
+F V + + LH+ LREYL+ EF + ++D+ ++
Sbjct: 228 ------------KFGRNVKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLI 275
Query: 224 DDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHF 283
DD++ M F VGNDF+PH+P L I A+ LL Y + LGG + + K +LRR++ F
Sbjct: 276 DDWVLMGFLVGNDFIPHLPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIF 335
Query: 284 IQAVGSYEDRIFQKRA 299
I A+ E F++ A
Sbjct: 336 ISALTEVELDHFKEHA 351
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 3/164 (1%)
Query: 435 GWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFA 494
+K +Y KF + +E +++ Y L WV+ YYY GV SW W+YP+HY PF
Sbjct: 413 NYKRNFYRNKFKR---DPNDELIEELCHHYVNALQWVLDYYYRGVQSWDWYYPFHYTPFI 469
Query: 495 SDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDF 554
SDLK+++Q I+F +G PF PF QLL V P+AS+ LP Y LM P SP+++FYP +F
Sbjct: 470 SDLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEF 529
Query: 555 EVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRN 598
E D+NGK++ W+ + +PFIDE RLL + E L+ EE RN
Sbjct: 530 ESDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERN 573
>pdb|1AAF|A Chain A, Nucleocapsid Zinc Fingers Detected In Retroviruses: Exafs
Studies On Intact Viruses And The Solution-State
Structure Of The Nucleocapsid Protein From Hiv-1
Length = 55
Score = 33.9 bits (76), Expect = 0.45, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 153 KCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEV 185
KCF CG+ GH+A NC KR + ++G ++
Sbjct: 14 KCFNCGKEGHIAKNCRAPRKRGCWKCGKEGHQM 46
>pdb|2OMK|A Chain A, Structure Of The Bacteroides Thetaiotaomicron Thiamin
Pyrophosphokinase
pdb|2OMK|B Chain B, Structure Of The Bacteroides Thetaiotaomicron Thiamin
Pyrophosphokinase
Length = 231
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 213 PPFEIDLECIVD-DFIFMCFFVGNDFLP--HMPTLEIREGAINLLMAVYKKEFRALGGYL 269
P E+ L + + F+ C N+++ H P + I +G + L+ YKK F ++ +
Sbjct: 43 PAHELPLRLLAEAQFVVCCXXAANEYISRGHTPDVIIGDG--DSLLPEYKKRFSSIILQI 100
Query: 270 TDGSKPSLRRVEHFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPD 329
+D + H++Q+ G + I + I R G +V +
Sbjct: 101 SDQETNDQTKAVHYLQSKGIRKIAIVGATGKREDHTLGNISLLVEYMRSGMEVRTVTDYG 160
Query: 330 SLVPVS 335
+ +PVS
Sbjct: 161 TFIPVS 166
>pdb|2M3Z|A Chain A, Nmr Solution Structure Of Hiv-1 Nucleocapsid Protein In
Complex With An Inhibitor Displaying A 2 Inhibitors:1 Nc
Stoichiometry
Length = 55
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 153 KCFLCGQPGHLAANCEGKAKRKAG 176
KCF CG+ GH+A NC +A RK G
Sbjct: 14 KCFNCGKEGHIAKNC--RAPRKKG 35
>pdb|1F6U|A Chain A, Nmr Structure Of The Hiv-1 Nucleocapsid Protein Bound To
Stem-Loop Sl2 Of The Psi-Rna Packaging Signal.
Implications For Genome Recognition
Length = 56
Score = 33.5 bits (75), Expect = 0.62, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 153 KCFLCGQPGHLAANCEGKAKRKAG 176
KCF CG+ GH+A NC +A RK G
Sbjct: 14 KCFNCGKEGHIAKNC--RAPRKKG 35
>pdb|1A1T|A Chain A, Structure Of The Hiv-1 Nucleocapsid Protein Bound To The
Sl3 Psi-Rna Recognition Element, Nmr, 25 Structures
pdb|1MFS|A Chain A, Dynamical Behavior Of The Hiv-1 Nucleocapsid Protein; Nmr,
30 Structures
Length = 55
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 153 KCFLCGQPGHLAANCEGKAKRKAG 176
KCF CG+ GH+A NC +A RK G
Sbjct: 14 KCFNCGKEGHIAKNC--RAPRKKG 35
>pdb|1BJ6|A Chain A, 1h Nmr Of (12-53) Ncp7D(ACGCC) COMPLEX, 10 STRUCTURES
pdb|1ESK|A Chain A, Solution Structure Of Ncp7 From Hiv-1
Length = 42
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 153 KCFLCGQPGHLAANCEGKAKRKAG 176
KCF CG+ GH A NC +A RK G
Sbjct: 3 KCFNCGKEGHTARNC--RAPRKKG 24
>pdb|2EXF|A Chain A, Solution Structure Of The Hiv-1 Nucleocapsid (Ncp7(12-55))
Complexed With The Dna (-) Primer Binding Site
pdb|2JZW|A Chain A, How The Hiv-1 Nucleocapsid Protein Binds And Destabilises
The (-)primer Binding Site During Reverse Transcription
Length = 44
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 153 KCFLCGQPGHLAANCEGKAKRKAG 176
KCF CG+ GH A NC +A RK G
Sbjct: 3 KCFNCGKEGHTARNC--RAPRKKG 24
>pdb|2L4L|A Chain A, Structural Insights Into The Ctar Dna Recognition By The
Hiv-1 Nucleocapsid Protein: Role Of Sugar Deoxyriboses
In The Binding Polarity Of Nc
Length = 45
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 153 KCFLCGQPGHLAANCEGKAKRKAG 176
KCF CG+ GH A NC +A RK G
Sbjct: 4 KCFNCGKEGHTARNC--RAPRKKG 25
>pdb|3Q2O|A Chain A, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3Q2O|B Chain B, Crystal Structure Of Purk: N5-Carboxyaminoimidazole
Ribonucleotide Synthetase
pdb|3QFF|A Chain A, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3QFF|B Chain B, Crystal Structure Of Adp Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|A Chain A, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3R5H|B Chain B, Crystal Structure Of Adp-Air Complex Of Purk:
N5-Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 389
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 140 ILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWT 199
+LR+V G C+L HL E KA+RK G + D + V + + LHIW
Sbjct: 329 VLRQVNRLTG----CYL-----HLYGKEEAKAQRKMGHVNILNDNIEVALEKAKSLHIWD 379
Query: 200 LREYL 204
+E L
Sbjct: 380 HQEQL 384
>pdb|3V4S|A Chain A, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
pdb|3V4S|B Chain B, Crystal Structure Of Adp-atp Complex Of Purk:
N5-carboxyaminoimidazole Ribonucleotide Synthetase
Length = 387
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 140 ILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWT 199
+LR+V G C+L HL E KA+RK G + D + V + + LHIW
Sbjct: 329 VLRQVNRLTG----CYL-----HLYGKEEAKAQRKMGHVNILNDNIEVALEKAKSLHIWD 379
Query: 200 LREYL 204
+E L
Sbjct: 380 HQEQL 384
>pdb|4DLK|A Chain A, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
pdb|4DLK|B Chain B, Crystal Structure Of Atp-ca++ Complex Of Purk: N5-
Carboxyaminoimidazole Ribonucleotide Synthetase
Length = 380
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 140 ILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWT 199
+LR+V G C+L HL E KA+RK G + D + V + + LHIW
Sbjct: 323 VLRQVNRLTG----CYL-----HLYGKEEAKAQRKMGHVNILNDNIEVALEKAKSLHIWD 373
Query: 200 LREYL 204
+E L
Sbjct: 374 HQEQL 378
>pdb|1HVN|E Chain E, Zinc-And Sequence-Dependent Binding To Nucleic Acids By
The N-Terminal Zinc Finger Domain Of The Hiv-1
Nucleocapsid Protein: Nmr Structure Of The Complex With
The Psi-Site Analog, DACGCC
pdb|1HVO|E Chain E, Zinc-And Sequence-Dependent Binding To Nucleic Acids By
The N-Terminal Zinc Finger Domain Of The Hiv-1
Nucleocapsid Protein: Nmr Structure Of The Complex With
The Psi-Site Analog, DACGCC
pdb|2ZNF|A Chain A, High-Resolution Structure Of An Hiv Zinc Fingerlike Domain
Via A New Nmr-Based Distance Geometry Approach
Length = 18
Score = 30.4 bits (67), Expect = 5.1, Method: Composition-based stats.
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 153 KCFLCGQPGHLAANCEG 169
KCF CG+ GH+A NC
Sbjct: 2 KCFNCGKEGHIARNCRA 18
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,449,996
Number of Sequences: 62578
Number of extensions: 1377505
Number of successful extensions: 2558
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2522
Number of HSP's gapped (non-prelim): 39
length of query: 1010
length of database: 14,973,337
effective HSP length: 108
effective length of query: 902
effective length of database: 8,214,913
effective search space: 7409851526
effective search space used: 7409851526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)