BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001806
(1010 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FQ03|XRN3_ARATH 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1
Length = 1020
Score = 1154 bits (2985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/973 (63%), Positives = 712/973 (73%), Gaps = 92/973 (9%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQRSRRFR++KDA+D+AAEEERLR+EFEREGR+LPPK DSQVFDSNVITPGTEFM VL
Sbjct: 111 MNQQRSRRFRSAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVL 170
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
SIALQYY+HLRLN+D GW+ IKVILSDANVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLY
Sbjct: 171 SIALQYYVHLRLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLY 230
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
GLDADLIML LATHEVHFSILREVV+TPGQQ++CFLCGQ GH A+NCEGK K++AGE DE
Sbjct: 231 GLDADLIMLGLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDE 290
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 240
KGD KKPYQFLHIW LREYL+ E RIPNPPFEIDLE IVDDFIF+CFFVGNDFLPH
Sbjct: 291 KGDGNDFVKKPYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPH 350
Query: 241 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 300
MPTLEIREGAINLLMAVYKKEFR+ GYLTDG KP+L+RVE FIQAVGS+ED+IFQKRA
Sbjct: 351 MPTLEIREGAINLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRAM 410
Query: 301 LHQRHAERIKREKA--QARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVG 358
HQR AER+KR+KA +R DD P QPD LVPV+RF GSRLAS P+PSP+Q ++
Sbjct: 411 QHQRQAERVKRDKAGKATKRMDDEAPTVQPD-LVPVARFSGSRLASAPTPSPFQSND--- 466
Query: 359 RLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDKSDA 418
G S KV RLS G+++GAAIV+ ENS E+D +ENKEE K KLKEL+R+KSDA
Sbjct: 467 ------GRSAPHQKVRRLSPGSSVGAAIVDVENSLESDERENKEELKTKLKELIREKSDA 520
Query: 419 FNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEG 478
FNSD EEDKVKLG+PGW+ERYYEEKF+ TPEE E RKDVVL+YTEGLCWVMHYY EG
Sbjct: 521 FNSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVRKDVVLKYTEGLCWVMHYYMEG 580
Query: 479 VCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKL 538
VCSWQWFYPYHYAPFASDLKDL + +I FELG PFKPFNQLLGVFP+ASSHALPE YR L
Sbjct: 581 VCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFNQLLGVFPAASSHALPERYRTL 640
Query: 539 MTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRN 598
MTDPNSPI DFYPTDFEVDMNGKR+SWQGIAKLPFIDE RLL+ V ++E TLT+EE RRN
Sbjct: 641 MTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDERRLLEAVSEVEFTLTDEEKRRN 700
Query: 599 SIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDP 658
S M DMLF+ SH L+ +++LD HC+QL +ERV+ K ++ P+LSDGMNGY++PC+G+
Sbjct: 701 SRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKVKIKPKLSDGMNGYLTPCSGET 760
Query: 659 HPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPVLW 718
HPPVFRSP+ MEDI+ NQV+C IY+LPDAH+H+TRPP GVIFPKK V + DLKP P LW
Sbjct: 761 HPPVFRSPMEGMEDILTNQVICCIYRLPDAHEHITRPPPGVIFPKKTVDIGDLKPPPALW 820
Query: 719 HEDSGRRP--------------HENGRHNPHGTISGRQLGEAAHRLVANSLQHMKVDRNG 764
HED+GRRP + GR NP G++SGR LG AAHRLV+NSLQ M DR
Sbjct: 821 HEDNGRRPMHNNHGMHNNHGMHNNQGRQNPPGSVSGRHLGNAAHRLVSNSLQ-MGTDRYQ 879
Query: 765 YGDRMHGSPLPYAAAPYVPPVPSYQEYGVYDQGYNRFSQPRTDSYPAGHSQSSISAAQPP 824
+ Y YVPP+P YQ G PP
Sbjct: 880 TPTDVPAPGYGYNPPQYVPPIP-YQHGGY---------------------------MAPP 911
Query: 825 YDGGYSQHYASNTSHHPNRRYHPQYDRNSSGEHPTHLYNPSGIHQNGGPRYPPRPMGSTS 884
GY+Q P +N G P PSG R+P P S S
Sbjct: 912 GAQGYAQ---------------PAPYQNRGGYQPR---GPSG-------RFPSEPYQSQS 946
Query: 885 SGANLYPPQGGYS--GYQSPAAGSFNQWGGANQSMPRGYGQGQHHQRRDG---------G 933
GGYS ++ GG+ Q+ PRGY GQHH ++ G G
Sbjct: 947 REGQHASRGGGYSGNHQNQHQQQQWHGQGGSEQNNPRGY-NGQHHHQQGGDHDRRGRGRG 1005
Query: 934 YQQYHDQQRNYSH 946
+HDQ N H
Sbjct: 1006 SHHHHDQGGNPRH 1018
>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1
Length = 1012
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/767 (60%), Positives = 574/767 (74%), Gaps = 35/767 (4%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQR+RRFRA+KDAA++AAEEE+LR+EFEREG+KLPPK DSQVFDSNVITPGTEFMA L
Sbjct: 113 MNQQRARRFRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGTEFMATL 172
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
S AL+YYIH+RLN+DPGW+ IKVILSDANVPGEGEHKIMSY+R +N PGY+PNT HCLY
Sbjct: 173 SFALRYYIHVRLNSDPGWKNIKVILSDANVPGEGEHKIMSYIRCNKNHPGYNPNTHHCLY 232
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
GLDADLIML+LATHE+HFSILREVVF PG++ KCFLCGQ GH AA+CEGK KRK GE +
Sbjct: 233 GLDADLIMLSLATHEIHFSILREVVFFPGEEGKCFLCGQEGHRAADCEGKIKRKTGEMLD 292
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 240
+ VV KKPY+F++IW LREYL+++ +IP + +L+ ++DDFIF+CFFVGNDFLPH
Sbjct: 293 NTEADVVVKKPYEFVNIWILREYLEHDMQIPGA--KKNLDRLIDDFIFICFFVGNDFLPH 350
Query: 241 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 300
MPTLEIREGAI LLM+VYK +FR+ YLTD SK +LR VE FI+AVG YE++IFQKRA+
Sbjct: 351 MPTLEIREGAIELLMSVYKNKFRSAKKYLTDSSKLNLRNVERFIKAVGMYENQIFQKRAQ 410
Query: 301 LHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRL 360
+ QR +ER +R+KA+ + D+ AQ SR SG + +L
Sbjct: 411 VQQRQSERFRRDKARDKARDNARDNAQ-----------ASRQFSGK----------LVQL 449
Query: 361 DNGKGTSGRPHKVP-----RLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDK 415
D+ S H P RLS IG A VE ENS + + +N+E+ K KLK+LLRDK
Sbjct: 450 DSLDEVSDSLHSSPSRKYLRLSLDDNIGVANVETENSLKAEELDNEEDLKFKLKKLLRDK 509
Query: 416 SDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYY 475
D F S N E+DKVKL + GW+ERYYEEKF AK+ EE E+ R+DVVL+YTEGLCW+MHYY
Sbjct: 510 GDGFRSGNGEQDKVKLNKVGWRERYYEEKFAAKSVEEMEQIRRDVVLKYTEGLCWIMHYY 569
Query: 476 YEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHY 535
Y GVCSW WFYPYHYAPFASDLK L++ +I FELG PFKPFNQLL V PSAS+HALPE Y
Sbjct: 570 YHGVCSWNWFYPYHYAPFASDLKGLEKLDIKFELGSPFKPFNQLLAVLPSASAHALPECY 629
Query: 536 RKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEA 595
R LMT+P+SPI+DFYP DFE+DMNGKRYSWQGI+KLPF++E RLL+ ++E +LT EE
Sbjct: 630 RSLMTNPDSPIADFYPADFEIDMNGKRYSWQGISKLPFVEEKRLLEAAAQVEKSLTNEEI 689
Query: 596 RRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCA 655
RRNS + DMLFV+ SHPL I +L+ L +ER + E+++P LSDGMNGYI+ C
Sbjct: 690 RRNSALFDMLFVVASHPLGELIRSLNSRTNNLSNEERATIIEKIDPGLSDGMNGYIASCG 749
Query: 656 GDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHK--HVTRPPAGVIFPKKIVQLEDLKP 713
GD P F S V MED++ NQV+CAIYKLP+ + +T + PKK + L DLK
Sbjct: 750 GDSQPSCFCSTVEGMEDVLTNQVICAIYKLPEDIRGSEITHQIPRLAIPKKTISLVDLKS 809
Query: 714 APVLWHEDSGRRPH-----ENGRHNPHGTISGRQLGEAAHRLVANSL 755
+LWHED +R + R+NP G+ISG +LG+A+HRLV ++
Sbjct: 810 GGLLWHEDGDKRRAPPKVIKIKRYNPEGSISGGRLGKASHRLVLQTI 856
>sp|Q9H0D6|XRN2_HUMAN 5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1
Length = 950
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 315/718 (43%), Positives = 420/718 (58%), Gaps = 61/718 (8%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQRSRRFRASK+ ++A E++R+R+E +G LPP+ + FDSN ITPGTEFM L
Sbjct: 111 MNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNL 170
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
+ L+YYI RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL
Sbjct: 171 AKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLC 230
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
G DADLIML LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE
Sbjct: 231 GADADLIMLGLATHEPNFTIIRE-EFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDE 289
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 240
D + + + FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH
Sbjct: 290 LADSLPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPH 349
Query: 241 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 300
+P+LEIRE AI+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR
Sbjct: 350 LPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKD 409
Query: 301 LHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFH-----GSRLASGPSPSPYQQSE 355
R K ++ + +R +P P ++ GS++AS P + Y+
Sbjct: 410 DEDSFRRRQKEKRKRMKRD---QPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEM-- 464
Query: 356 CVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDK 415
R+ N S P+ SF +D + L + R
Sbjct: 465 ---RMQNNSSPSISPN-------------------TSFTSDGS------PSPLGGIKRKA 496
Query: 416 SDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYY 475
D+ + P ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ YY
Sbjct: 497 EDSDSEPEP-EDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVLRYY 553
Query: 476 YEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEH 534
Y+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP
Sbjct: 554 YQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPS 613
Query: 535 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 594
+RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT EE
Sbjct: 614 WRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEE 673
Query: 595 ARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPC 654
RRNS+ D+LFV HPL I L Q E VEV PEL G+ G S
Sbjct: 674 TRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVEVP----PELCHGIQGKFSLD 725
Query: 655 AGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 702
P + SPV + D+ N V+ +K P A ++ R PA V+ P
Sbjct: 726 EEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783
>sp|Q5ZIP4|XRN2_CHICK 5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1
Length = 949
Score = 540 bits (1392), Expect = e-152, Method: Compositional matrix adjust.
Identities = 328/798 (41%), Positives = 449/798 (56%), Gaps = 62/798 (7%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQRSRRFRASK+ ++A E++++RQE +G LPP+ + FDSN ITPGTEFM L
Sbjct: 111 MNQQRSRRFRASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNL 170
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
+ L+YYI RLN+DPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL
Sbjct: 171 AKCLRYYIADRLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLC 230
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
G DADLIML LATHE HF+I+RE F P + C LC Q GH +C+G + K G+ D+
Sbjct: 231 GADADLIMLGLATHEPHFTIIRE-EFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQ 289
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 240
D + ++ + F+ + LREYL+ E + + PF D E VDD++FMCFFVGNDFLPH
Sbjct: 290 FADSLPASEQEFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPH 349
Query: 241 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 300
+P+LEIREGAI+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR
Sbjct: 350 LPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKD 409
Query: 301 LHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRL 360
R K +K + +R S +P +F L + SP +
Sbjct: 410 DDDNFKRRQKEKKKRMKRDH--------PSFIPGGQFSPQALGNRSSPQ---------AI 452
Query: 361 DNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQE--NKEEFKAKLKELLRDKSDA 418
N + T+ + + +NS + P N + + + + R D+
Sbjct: 453 SNPRQTA--------------FEMRMHDRQNSTMSSPNTSLNSDGSPSPARGIKRKSEDS 498
Query: 419 FNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEG 478
+ P ED ++L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ YYY+G
Sbjct: 499 DSEPEP-EDNIRLWESGWKQRYYKNKFDVDASDEK--FRRKVVQSYVEGLCWVLRYYYQG 555
Query: 479 VCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYRK 537
SW W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP +RK
Sbjct: 556 CASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRK 615
Query: 538 LMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARR 597
LMTDP S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT EE RR
Sbjct: 616 LMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRR 675
Query: 598 NSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGD 657
NS+ D+LFV HPL I +Q K K V + PEL G+ G ++P
Sbjct: 676 NSLGGDVLFVGKHHPLCDFI------VEQYKSKNTEPVD--MPPELCYGIQGKLTPNENA 727
Query: 658 PHP-PVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLEDLKPAPV 716
P SPV + D+ N + +K P + IF K V KP PV
Sbjct: 728 VLPDKTVESPVPMLRDLTQNSAVSISFKDPQFDED-------FIF-KATVLPGAKKPPPV 779
Query: 717 LWHEDSGRRPHENGRHNPH-GTISGRQ---LGEAAHRLVANSLQHMKVDRNGYGDRMHGS 772
L D + ++ P G R+ L ++A R + ++ M +R G +
Sbjct: 780 LKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGHA---MPRERGMPGMYANAV 836
Query: 773 PLPYAAAPYVPPVPSYQE 790
PL +PY P+ S Q+
Sbjct: 837 PLGAYGSPYTRPLMSGQQ 854
>sp|Q5R4L5|XRN2_PONAB 5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1
Length = 950
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 314/719 (43%), Positives = 420/719 (58%), Gaps = 63/719 (8%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQRSRRFRASK+ ++A E++R+R+E +G LPP+ + FDSN ITPGTEFM L
Sbjct: 111 MNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNL 170
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
+ L+YYI RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL
Sbjct: 171 AKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLC 230
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
G DADLIML LATHE +F+I+RE F P + C LC Q GH +CEG + K + DE
Sbjct: 231 GADADLIMLGLATHEPNFTIIRE-EFKPNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDE 289
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 240
D + + + FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH
Sbjct: 290 LADSLPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPH 349
Query: 241 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 300
+P+LEIRE AI+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR
Sbjct: 350 LPSLEIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKD 409
Query: 301 LHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFH-----GSRLASGPSPSPYQQSE 355
R K ++ + +R +P P ++ GS++AS P + Y+
Sbjct: 410 DEDSFRRRQKEKRKRMKRD---QPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEM-- 464
Query: 356 CVGRLDNGKGTSGRPH-KVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRD 414
R+ N S P+ S + IG +AE+S
Sbjct: 465 ---RMQNNSSPSISPNTSFTSDGSPSPIGGIKRKAEDS---------------------- 499
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 474
+S+ ED V+L E GWK+RYY+ KF+A +E+ R+ VV Y EGLCWV+ Y
Sbjct: 500 -----DSEPEPEDNVRLWEAGWKQRYYKNKFDADAADEK--FRRKVVQSYVEGLCWVLRY 552
Query: 475 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPE 533
YY+G SW+W+YP+HYAPFASD + + FE G PFKP QL+GVFP+AS + LP
Sbjct: 553 YYQGCASWKWYYPFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPP 612
Query: 534 HYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEE 593
+RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT E
Sbjct: 613 SWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPE 672
Query: 594 EARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISP 653
E RRNS+ D+LFV HPL I L Q E V+V PEL G+ G S
Sbjct: 673 ETRRNSLGGDVLFVGKHHPLHDFILEL----YQTGSTEPVDVP----PELCHGIQGKFSL 724
Query: 654 CAGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 702
P + SPV + D+ N V+ +K P A ++ R PA V+ P
Sbjct: 725 DEEAILPDQIVCSPVPMLRDLTQNTVVSINFKDPQFAEDYIFKAVMLPGARKPAAVLKP 783
>sp|Q9DBR1|XRN2_MOUSE 5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1
Length = 951
Score = 537 bits (1383), Expect = e-151, Method: Compositional matrix adjust.
Identities = 313/718 (43%), Positives = 418/718 (58%), Gaps = 61/718 (8%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQRSRRFRASK+ ++A E++R+R+E +G LPP+ + FDSN ITPGTEFM L
Sbjct: 111 MNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNL 170
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
+ L+YYI RLNNDPGW+ + VILSDA+ PGEGEHKIM Y+R QR P +DPNT HCL
Sbjct: 171 AKCLRYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLC 230
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
G DADLIML LATHE +F+I+RE F P + C LC Q GH +CEG + K G+ DE
Sbjct: 231 GADADLIMLGLATHEPNFTIIRE-EFKPNKPKPCALCNQFGHEVKDCEGLPREKKGKHDE 289
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 240
D + + + FL + LREYL+ E + + PF D+E +DD++FMCFFVGNDFLPH
Sbjct: 290 LADSLPCAEGEFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPH 349
Query: 241 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 300
+P+LEIREGAI+ L+ +YK GGYLT+ +L+RV+ + AVG ED IF+KR
Sbjct: 350 LPSLEIREGAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKD 409
Query: 301 LHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFH-----GSRLASGPSPSPYQQSE 355
R K ++ + +R +P P ++ G ++AS P + Y+
Sbjct: 410 DEDSFRRRQKEKRKRMKRD---QPAFTPSGILTPHALGSRNSPGCQVASNPRQAAYEM-- 464
Query: 356 CVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRDK 415
R+ S P+ SF +D + L + R
Sbjct: 465 ---RMQRNSSPSISPN-------------------TSFASDGS------PSPLGGIKRKA 496
Query: 416 SDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYY 475
D+ + P ED V+L E GWK+RYY+ KF+ +E+ R+ VV Y EGLCWV+ YY
Sbjct: 497 EDSDSEPEP-EDNVRLWEAGWKQRYYKNKFDVDAADEK--FRRKVVQSYVEGLCWVLRYY 553
Query: 476 YEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEH 534
Y+G SW+W+YP+HYAPFASD + + + FE G PFKP QL+GVFP+AS + LP
Sbjct: 554 YQGCASWKWYYPFHYAPFASDFEGIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPT 613
Query: 535 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 594
+RKLM+DP+S I DFYP DF +D+NGK+Y+WQG+A LPF+DE RL ++++ LT EE
Sbjct: 614 WRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEE 673
Query: 595 ARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPC 654
RRNS+ D+LFV HPL I L Q E V+V PEL G+ G S
Sbjct: 674 NRRNSLGGDVLFVGKLHPLRDFILEL----YQTGSTEPVDVP----PELCHGIQGTFSLD 725
Query: 655 AGDPHPP-VFRSPVASMEDIMGNQVLCAIYKLPD-AHKHV--------TRPPAGVIFP 702
P SPV + D+ N + +K P A +V R PA V+ P
Sbjct: 726 EEAILPDQTVCSPVPMLRDLTQNTAVSINFKDPQFAEDYVFKAAMLPGARKPATVLKP 783
>sp|Q2GNZ6|XRN2_CHAGB 5'-3' exoribonuclease 2 OS=Chaetomium globosum (strain ATCC 6205 /
CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=RAT1
PE=3 SV=3
Length = 1039
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 312/758 (41%), Positives = 429/758 (56%), Gaps = 69/758 (9%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFERE----GRKLPPKSD-SQVFDSNVITPGTE 55
MNQQRSRRFRA++DA + ++++L + ++E ++ P ++ + FDSN ITPGT
Sbjct: 113 MNQQRSRRFRAAQDAKEKEEDKQQLLKMLQKEKGSTAKEEPIETVVKKAFDSNSITPGTP 172
Query: 56 FMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNT 115
FM +L+ +L+Y+ +LN DP W K+KVI+SDA VPGEGEHKIM +VR QRN P +DPNT
Sbjct: 173 FMDILAASLRYWCAYKLNTDPAWAKMKVIISDATVPGEGEHKIMEFVRSQRNSPEHDPNT 232
Query: 116 RHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRK 174
RH +YGLDADLIML LATHE HF +LRE V F G+ C LCGQ GH NC G+AK K
Sbjct: 233 RHVIYGLDADLIMLGLATHEPHFRVLREDVFFQQGKARMCKLCGQKGHDERNCRGEAKEK 292
Query: 175 AGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVG 234
AGEFDEK + P KP+ +LH+ LREYL E IPN PF DLE +DD++FMCFFVG
Sbjct: 293 AGEFDEK--DKAEPLKPFIWLHVSILREYLAIELNIPNLPFRWDLERAIDDWVFMCFFVG 350
Query: 235 NDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRI 294
NDFLPH+P LEIRE I LMA++K +GGY+T L R ++ + + ED I
Sbjct: 351 NDFLPHLPALEIRENGIETLMAIWKDNLPVMGGYVTKDGHVDLDRAQYILSGLAKQEDSI 410
Query: 295 FQKRARLHQRHAERIKREKAQARRGDDV-----EPLA-------QPDSLVPVSRFHGSRL 342
F++R R KR K ++G++ PL+ P++ P + +
Sbjct: 411 FRRRKETEDRREAGFKRRKLNNQQGNNRGGAHDSPLSGRGGRKGAPEANGPPVGMNLFPV 470
Query: 343 ASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETD-PQENK 401
AS P P V R + ++ K + I + + + + E D P+E
Sbjct: 471 ASIPKPV-ITHDMVVNRANVANKSAASVLK-------SQIQSLVAQTQEKPEGDEPKEEN 522
Query: 402 EEFKA------KLKELLRDKSDAFNSDNPEE--------------DKVKLGEPGWKERYY 441
E K K K L ++ A SD + D V+L E G+ +RYY
Sbjct: 523 PEAKTPPSALGKRKAELIEEGTATASDAASDTETPATTSSEEGPIDTVRLWEEGYADRYY 582
Query: 442 EEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLD 501
E+KF K + R V Y EGL WV+ YY++G SW+WFYPYHYAPFA+D DL
Sbjct: 583 EQKF--KVDAKDIAFRHKVARAYVEGLAWVLMYYFQGCPSWEWFYPYHYAPFAADFVDLG 640
Query: 502 QFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGK 561
+ ISFE G +PF QL+ V P+AS HA+PE + LMT +SPI DFYP DFE+D+NGK
Sbjct: 641 KMKISFEKGRISRPFEQLMSVLPAASRHAIPEVFHDLMTQEDSPILDFYPEDFEIDLNGK 700
Query: 562 RYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHP-----LSAS 616
+ SWQGIA LPFI+ RLLD +K H L+ E+ RN+ D+L + SHP +S+
Sbjct: 701 KMSWQGIALLPFIEMPRLLDAMKTKSHLLSAEDKARNAPGHDVLLISDSHPGLYEDISSH 760
Query: 617 IYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAG-DPHPP-VFRSPVASMEDIM 674
Y+ + + K L+P+ SDG++G + G PH V+ +M D+
Sbjct: 761 FYSKKQAVPEFK----------LDPKRSDGLSGKVRKIEGYVPHGSLVYPLERNTMPDVD 810
Query: 675 GNQVLCAIYKLP-DAHKHVTRPPAGVIFPKKIVQLEDL 711
++ + Y +P +H H + G+ P + D+
Sbjct: 811 YDRSMSVNYDMPTSSHIHKSMLLRGLKMPTPALDRSDV 848
>sp|Q5BFH3|XRN2_EMENI 5'-3' exoribonuclease 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rat1 PE=3
SV=3
Length = 1032
Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 300/745 (40%), Positives = 430/745 (57%), Gaps = 68/745 (9%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRK--------LPPKSDSQVFDSNVITP 52
MNQQR+RRFR++++A E++ +QEF+R K L + + +DSNVITP
Sbjct: 111 MNQQRARRFRSAQEAR----EQDEKKQEFQRMLAKQNGDKEQMLQEEVIQKTWDSNVITP 166
Query: 53 GTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYD 112
GT FM +L+ +L+Y+I +LN DP WEK+K+I+SDA VPGEGEHKIM ++R QR P +D
Sbjct: 167 GTPFMDILAASLRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRASPEHD 226
Query: 113 PNTRHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKA 171
PN RH +YGLDADLIML LATHE HF +LRE V F +Q C LCGQPGH A C G+A
Sbjct: 227 PNARHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESKQRTCHLCGQPGHKAEECRGQA 286
Query: 172 KRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCF 231
K K GEFDEKG + KP+ +LH+ LREYL E +P+ PF DLE +DD++FMCF
Sbjct: 287 KEKNGEFDEKGKGATL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCF 344
Query: 232 FVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYE 291
FVGNDFLPH+P+L+IRE I+ L+A+++ +GGYLT + L++ + +Q + E
Sbjct: 345 FVGNDFLPHLPSLDIREDGIDTLIAIWRDNIPLMGGYLTQDGRVDLKKAQLILQGLAKQE 404
Query: 292 DRIFQKRARLHQRHAERIKR----------EKAQARR--GDDVEPLAQPDSLVPVSRFHG 339
D IF++R + +R KR E+A+ RR + + P P S
Sbjct: 405 DAIFRRRRQAEERKLANEKRRKQEEKARNEERARKRRRSSPSYDAIESPTHAKPRSAGAA 464
Query: 340 SR-------LASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENS 392
+ + Q E + +G R + + S+ A + + ++ ++
Sbjct: 465 AAPPAGLELITPARGELARQTRELTHSMVVNRGNVYRANMANK-SAAAVLKSKLLGGQDG 523
Query: 393 FETDPQENKEEFKAKLKE----LLRDKSDA-----FNSDNPEE-----------DKVKLG 432
+D E+ E A+L L + K+D ++ P++ D V+L
Sbjct: 524 QPSDDGESTAESDAQLDAAGPVLGKRKADEAEVGQLGTETPDKPEPAKADELPPDTVRLW 583
Query: 433 EPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAP 492
E G+ +RYYE+KF P+++ E R V Y EGL WV+ YY++G SW W+YPYHYAP
Sbjct: 584 EEGYADRYYEQKFGVD-PQDK-EFRHKVARAYAEGLAWVLLYYFQGCPSWTWYYPYHYAP 641
Query: 493 FASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPT 552
FA+D D+ +SFE G PFKP+ QL+GV P++S+HA+P+ + LMT+P+S I DFYP
Sbjct: 642 FAADFVDIGDMELSFEKGTPFKPYEQLMGVLPASSNHAIPKVFHSLMTEPDSEIIDFYPE 701
Query: 553 DFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHP 612
DF VD+NGK+++WQG+ LPFIDE RLL + K LTE+E RN++ D+L + SHP
Sbjct: 702 DFPVDLNGKKFAWQGVVLLPFIDEKRLLAAMSKKYPLLTEDEKARNTVGRDVLLLSESHP 761
Query: 613 LSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPC-AGDPHPPVFRS----PV 667
L + + K++ K +LN +SDG+ G + A PH + S +
Sbjct: 762 LYQDLVS------NFYSKKQGAPKYKLNMRVSDGLAGKVEKNEAYIPHSSLVSSLEEYGM 815
Query: 668 ASMEDIMGNQVLCAIYKLPDAHKHV 692
S+ED V I K + HK +
Sbjct: 816 PSLEDDRSIMVNYEIPKSTNIHKSM 840
>sp|Q60SG7|XRN2_CAEBR 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2
PE=3 SV=2
Length = 976
Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust.
Identities = 312/748 (41%), Positives = 423/748 (56%), Gaps = 47/748 (6%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQV---FDSNVITPGTEFM 57
MNQQRSRRFRASK+ A+ AA E R+ EG +P K + FDSN ITPGT FM
Sbjct: 111 MNQQRSRRFRASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFM 170
Query: 58 AVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRH 117
A L+ AL+YYIH R+ NDP W I++ILSDANVPGEGEHKIM Y+R QR P +DPNT H
Sbjct: 171 ARLADALRYYIHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVH 230
Query: 118 CLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGE 177
CL G DADLIML +ATHE +F+I+RE F P Q C LCGQ GH C G A
Sbjct: 231 CLCGADADLIMLGIATHEANFNIIRE-EFVPNQPRACELCGQYGHELKECRG-----AEN 284
Query: 178 FDEKGDEVVVP---KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVG 234
+ GDE P +K + FL I LREYL+ E +PN PF+ +LE +DD++F+CFFVG
Sbjct: 285 DTDLGDEYCKPEQREKNFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVG 344
Query: 235 NDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRI 294
NDFLPH+P+LEIREGAI+ L+ +YK+ + GYLT P L RVE ++ +G ED I
Sbjct: 345 NDFLPHLPSLEIREGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEI 404
Query: 295 FQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQS 354
F++R + +R E K +KA+ ++ P + S P +P S
Sbjct: 405 FKRRQQDEERFKENQKNKKARMQQYGRGRGGRGRGRGQPA--YVPSHGILAPMSAPMHHS 462
Query: 355 ECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKLKELLRD 414
G + R + ++ A + +++ E A+ +
Sbjct: 463 ---GESTRQMASDARQAAMQFNATNDANAQAAANLKALLNVKGEQSPAEVAAQESRKRKA 519
Query: 415 KSDAFNSDNPEE--DKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVM 472
+ +D EE D ++L E GWKERYY KF+ + + + R V Y EGLCWV+
Sbjct: 520 EQPIIITDEDEEPKDDIRLYESGWKERYYRAKFDVGS--DDVDFRHRVAWAYVEGLCWVL 577
Query: 473 HYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFEL-GHPFKPFNQLLGVFPSASSHAL 531
YYY+G SW W++PYHYAPFASD + + +F F PF P QL+ VFP+AS L
Sbjct: 578 RYYYQGCSSWDWYFPYHYAPFASDFETVGEFKPDFTRPTKPFNPLEQLMSVFPAASKQHL 637
Query: 532 PEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLT 591
P ++KLMT+ SPI D YP DF +D+NGK+Y+WQG+A LPF+DE RLL+ +K + TLT
Sbjct: 638 PVEWQKLMTEDESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLETLKSVYPTLT 697
Query: 592 EEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYI 651
+EE RN+ + +F+ +H + + + K + V+ L+P L +G++G I
Sbjct: 698 DEEKYRNTRGPNRIFIGRNH----KSFAFFQQVAESKSNDLVD----LDPSLLNGVSGKI 749
Query: 652 S--PCAGDPHPPVFRSPVASME--DIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQ 707
S A P P F SPV+ E D+ N +C +Y+ P+ PA +FP V+
Sbjct: 750 SYDSTATAPGLP-FPSPVSHEECQDLPTNCGICVLYEDPEY-------PANYVFPA--VR 799
Query: 708 LEDLKPA-PVLWHEDSGRRPHENGRHNP 734
L+ K A L ED R +GR NP
Sbjct: 800 LDGAKEAEKTLRPEDWNER--RDGRFNP 825
>sp|Q4HWE2|XRN2_GIBZE 5'-3' exoribonuclease 2 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=RAT1 PE=3 SV=3
Length = 980
Score = 517 bits (1331), Expect = e-145, Method: Compositional matrix adjust.
Identities = 304/749 (40%), Positives = 427/749 (57%), Gaps = 56/749 (7%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFERE-GRKLPPKSDSQV----FDSNVITPGTE 55
MNQQRSRRFR++++A + +++ L + +++ G L +S V FDSN ITPGT
Sbjct: 112 MNQQRSRRFRSAQEAQEKEQDKQELIKMLKQQNGGNLSTESLETVTKKAFDSNSITPGTP 171
Query: 56 FMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNT 115
FM +L+++L+Y+ +LN DPGW K+K+I+SDA VPGEGEHKIM++VR QR P +DPNT
Sbjct: 172 FMDILALSLRYWCQYKLNTDPGWAKLKIIISDATVPGEGEHKIMNFVRSQRASPDHDPNT 231
Query: 116 RHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRK 174
RH +YGLDADLIML LATHE HF +LRE VF Q+ + C +CGQ GH A NC G+ K+K
Sbjct: 232 RHVIYGLDADLIMLGLATHEPHFRVLREDVFFQDQKARLCKICGQKGHDAQNCRGEEKKK 291
Query: 175 AGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVG 234
GE DEK V + KP+ +LH+ LREYL E +PN PF DLE VDD+IFMC FVG
Sbjct: 292 DGEHDEKDKGVAL--KPFIWLHVAVLREYLAVELGVPNLPFRFDLERAVDDWIFMCCFVG 349
Query: 235 NDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRI 294
NDFLPH+P LEIRE I+ L ++K +GGY+T L R + + + ED I
Sbjct: 350 NDFLPHLPALEIREHGIDTLTKIWKDNLPVMGGYVTKDGHIDLERAQVILDGLAQQEDNI 409
Query: 295 FQKRARLHQRHAERIKREKAQ-------ARRGDDVEPLA-----QPDSLVPVSRFHGSRL 342
F++R R KR K Q R+G P P++ +P+
Sbjct: 410 FKRRKEQEDRREANFKRRKLQNEVNGRGGRQGGPSHPKKINGHENPENGLPLQ------- 462
Query: 343 ASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKE 402
A G ++Q+ + N S P S A++ A ++++ S EN E
Sbjct: 463 AVGAYTGRHEQTLTHDMVVN---RSTAPDANVANKSAASVLKAQLQSQKSLSNPKPENPE 519
Query: 403 EFK---------AKLKELLRDKSDAFNSDNPEE-------DKVKLGEPGWKERYYEEKFN 446
+ + ++E DA + P D V+L E G+ +RYYE+KF+
Sbjct: 520 QESPSALGKRKASSIEEGNSSVPDAASVSTPSTSAEEGPVDDVRLWEDGYADRYYEKKFH 579
Query: 447 AKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNIS 506
K P++ E R V Y EGL WV+ YY++G SW+W+YPYHYAPFA+D KD+ + NIS
Sbjct: 580 -KDPKDIE-FRHGVGRAYVEGLAWVLLYYFQGCPSWEWYYPYHYAPFAADFKDIAKMNIS 637
Query: 507 FELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQ 566
FE G KPF QL+ V P+AS HALPE + LM +P S I DFYP DFE+D+NGK+++WQ
Sbjct: 638 FEKGRVSKPFEQLMSVLPAASRHALPEVFHDLMLNPESNIIDFYPEDFEIDLNGKKFAWQ 697
Query: 567 GIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQ 626
G+A LPFI+ RLL V+ L+ ++ RN + D+L H S+Y DE +
Sbjct: 698 GVALLPFIEMPRLLAAVQSKYPELSAADSARNEMGRDVLIFSEGH---ESLY--DEVLTK 752
Query: 627 LKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVA--SMEDIMGNQVLCAIYK 684
K++ + K +LNP+ SDG++G + G + P+ SM D+ ++ + Y
Sbjct: 753 FYSKKQGDSKFKLNPKKSDGLSGRVEKKEGYVPHSELKYPLERNSMPDLDYDRSVSVYYD 812
Query: 685 LPDAHK-HVTRPPAGVIFPKKIVQLEDLK 712
P A + H + GV P + D++
Sbjct: 813 FPQASQTHKSMLLRGVQLPTPALTQNDIQ 841
>sp|Q8WZX5|XRN2_NEUCR 5'-3' exoribonuclease 2 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rat-1
PE=3 SV=3
Length = 1072
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 302/762 (39%), Positives = 412/762 (54%), Gaps = 66/762 (8%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRK-----LPPKSDSQVFDSNVITPGTE 55
MNQQRSRRFRA+++A + ++++ + +++ K + FDSN ITPGT
Sbjct: 112 MNQQRSRRFRAAREAMEKEEDKQKFVELLKKQNGKPQEEEPVEVVVKKAFDSNSITPGTP 171
Query: 56 FMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNT 115
FM +L+ +L+Y+ +LN DP W IKVI+SDA VPGEGEHKIM +VR QR P +DPNT
Sbjct: 172 FMDILAASLRYWCSYKLNTDPAWANIKVIISDATVPGEGEHKIMEFVRSQRGSPNHDPNT 231
Query: 116 RHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRK 174
RH +YGLDADLIML LATHE HF +LRE VF + + C +CGQ GH A NC+G+AK K
Sbjct: 232 RHVIYGLDADLIMLGLATHEPHFRVLREDVFAQDSRPRLCKICGQKGHDAMNCKGEAKEK 291
Query: 175 AGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVG 234
GEFDEK + VVP KP+ +LH+ LREYL E +P PF+ +LE +DD++FMCFFVG
Sbjct: 292 NGEFDEK--DAVVPLKPFIWLHVSILREYLAIELDVPGLPFQFNLERAIDDWVFMCFFVG 349
Query: 235 NDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRI 294
NDFLPH+P LEIRE I+ L A++K +GGYLT L RV++ + + ED I
Sbjct: 350 NDFLPHLPALEIRENGIDTLTAIWKDNLPVMGGYLTKDGHADLERVQYIMAGLAKQEDAI 409
Query: 295 FQKRARLHQRHAERIKREK----AQARRGDDVEPLAQP--DSLVPVS-RFHGSRLASGPS 347
F++R R KR K A+ RR + Q +S P FH G +
Sbjct: 410 FRRRKETEDRREAGFKRRKLADEARQRRAQGSRQIRQAAENSGPPAGFSFHKINEFPGKA 469
Query: 348 PSPYQQSECVGR---LDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEE- 403
P P + V +D + V + + + EN E+ +
Sbjct: 470 PQPSITHDMVVNRQAVDQANVANKSAASVLKDQIKSMMAQGTSTPENGAESTETPAETAA 529
Query: 404 --------------FKAKLKELLRDK-----------SDAFNSDNPEEDKVKLGEPGWKE 438
+ EL+ D ++ SD D V+L E G+ +
Sbjct: 530 AAPATEEQAAPPAALGKRKAELIEDAVAGPEASSTEVTEISESDAEPTDSVRLWEEGYAD 589
Query: 439 RYYEEKFNAKTPEEREETRKDVVLR------YTEGLCWVMHYYYEGVCSWQWFYPYHYAP 492
RYYE+KF RKD+ R Y EGL WV+ YY++G SW+WFYPYHYAP
Sbjct: 590 RYYEQKFKVD--------RKDIDFRHKVGRAYAEGLAWVLEYYFQGCPSWEWFYPYHYAP 641
Query: 493 FASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPT 552
FA+D DL + I FE G +PF QL+ V P+AS HA+PE + LM + S I FYP
Sbjct: 642 FAADFVDLGKMEIKFEKGRISRPFEQLMSVLPAASRHAIPEVFHSLMLEETSEIRHFYPD 701
Query: 553 DFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHP 612
DFE+D+NGK+ +WQG+A LPFID RLL ++ H L+ E+ RN+ D L + SHP
Sbjct: 702 DFEIDLNGKKMAWQGVALLPFIDMPRLLAAMETKSHLLSPEDHLRNAPGKDYLLLSDSHP 761
Query: 613 LSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAG-DPH-PPVFRSPVASM 670
++Y D Q K++ K L+P S G++G + G PH V+ SM
Sbjct: 762 ---TLY--DHITSQFYSKKQGTTKFELDPTKSAGLSGLVEKIDGYVPHGSLVYPLSRNSM 816
Query: 671 EDIMGNQVLCAIYKLPD-AHKHVTRPPAGVIFPKKIVQLEDL 711
D+ ++ L Y PD +H H + GV P + D+
Sbjct: 817 PDVDYDRSLMVHYFFPDCSHTHKSMLLRGVQMPTPALTRSDI 858
>sp|Q8TFZ1|XRN2_ASPFU 5'-3' exoribonuclease 2 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rat1 PE=3
SV=4
Length = 1058
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 304/768 (39%), Positives = 434/768 (56%), Gaps = 81/768 (10%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFERE-GRKLPPKSDSQV----FDSNVITPGTE 55
MNQQR+RRFR++++A ++ ++E R+ ++ G K+ + +V +DSNVITPGT
Sbjct: 111 MNQQRARRFRSAQEAKEADEKKEEFRKMLAKQNGNKVDEELQEEVVKKTWDSNVITPGTP 170
Query: 56 FMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNT 115
FM +L+ +L+Y+I +LN DP WEK+K+I+SDA VPGEGEHKIM ++R QR P +DPNT
Sbjct: 171 FMDILAASLRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFIRSQRAAPEHDPNT 230
Query: 116 RHCLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRK 174
RH +YGLDADLIML LATHE HF +LRE V F + C LCGQ GH A C G+AK K
Sbjct: 231 RHVIYGLDADLIMLGLATHEPHFRVLREDVFFQESRARTCHLCGQQGHKAEECRGQAKEK 290
Query: 175 AGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVG 234
GEFDEK + KP+ +LH+ LREYL E +P+ PF DLE +DD++FMCFFVG
Sbjct: 291 NGEFDEKQKGSSL--KPFIWLHVSILREYLAAELYVPHQPFPFDLERALDDWVFMCFFVG 348
Query: 235 NDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRI 294
NDFLPH+P+L+IRE I+ L+A+++ +GGYLT+ L+R + +Q + ED I
Sbjct: 349 NDFLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTEDGHVDLKRAQLILQGLAKQEDAI 408
Query: 295 FQKRARLHQRHAERIKREKAQA------------------------------RRGDDVEP 324
F++R + +R KR K +A R G D P
Sbjct: 409 FRRRRQAEERKLANEKRRKQEAKAREEERARKRRRSSPTYEPMDSPVGHRAPRGGGDAAP 468
Query: 325 LAQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGR--LDNGKGTSGRPHKVPRLSSGATI 382
Q + + P SR SR + S V R + N + K+ + S
Sbjct: 469 PNQLELITP-SRGELSRQTRELTHSMVVNRGAVYRANMANKSAAAVLKSKLMQGSQNGQN 527
Query: 383 GAAIVEAENSFETDPQENKEE------------FKAKLKELLRDKSDAFNSDNP------ 424
G E + +P +++ + KA L E + D+P
Sbjct: 528 GEEKSEGATTNNDEPSQDQPDQTEQTSPSVLGKRKADLVEEEDTDAGTPGRDSPAVPVAA 587
Query: 425 EEDK-----VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGV 479
+ED+ V+L E G+ +RYYE+KF P+++ E R V Y EGL WV+ YY++G
Sbjct: 588 KEDELPPDTVRLWEEGYADRYYEQKFGVD-PQDK-EFRHKVARAYAEGLAWVLLYYFQGC 645
Query: 480 CSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLM 539
SW W+YPYHYAPFA+D D+ I+F+ G PFKPF QL+GV P++S+HA+P+ + LM
Sbjct: 646 PSWTWYYPYHYAPFAADFVDIGDMEITFDKGVPFKPFEQLMGVLPASSNHAIPKVFHDLM 705
Query: 540 TDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNS 599
+ P+S I DFYP DF VD+NGK+++WQG+ LPFIDE RLL ++K LTE+E RNS
Sbjct: 706 SSPDSEIIDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLTEDEKLRNS 765
Query: 600 IMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPC-AGDP 658
+ ++L + +HPL + K++ K +LN +SDG+ G + A P
Sbjct: 766 VGREVLLISEAHPLYQDL------VANFYSKKQGVQKYKLNMRISDGLAGKVERNEAYIP 819
Query: 659 HPPVFRS----PVASMEDIMGNQVLCAIYKLPDA-HKHVTRPPAGVIF 701
H + S + S+ED ++ L Y++P + H H + GV F
Sbjct: 820 HSSLPSSLEEYGMPSLED---DRSLTVNYEIPKSNHVHKSMLLRGVKF 864
>sp|Q9U299|XRN2_CAEEL 5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2
PE=3 SV=2
Length = 975
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 311/774 (40%), Positives = 431/774 (55%), Gaps = 62/774 (8%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQV-FDSNVITPGTEFMAV 59
MNQQRSRRFRASK+ A+ A E R EG +PPK + FDSN ITPGT FMA
Sbjct: 111 MNQQRSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMAR 170
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
L+ AL+YYIH R+ ND W I++ILSDANVPGEGEHKIM YVR QR P +DPNT HCL
Sbjct: 171 LADALRYYIHDRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCL 230
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
G DADLIML +ATHE +F+I+RE F P Q C LCGQ GH C G A
Sbjct: 231 CGADADLIMLGIATHEANFNIIRE-EFVPNQPRACDLCGQYGHELKECRG-----AENET 284
Query: 180 EKGDEVVVP---KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGND 236
+ GD+ P +K + FL I LREYL+ E +PN PF+ D+E +DD++F+CFFVGND
Sbjct: 285 DLGDDYCKPEQREKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGND 344
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
FLPH+P+LEIREGAI+ L+ +YK+ + GYLT P L RVE ++ +G ED IF+
Sbjct: 345 FLPHLPSLEIREGAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFK 404
Query: 297 KRARLHQRHAERIKREKAQAR--------RGDDVEPLAQPDSLVPVSRFHGSRLASGPSP 348
+R + +R E + +KA+ + Q + VP HG LA +P
Sbjct: 405 RRQQDEERFQENQRNKKARMQMYGGGGRGGRGRGRGRGQQPAFVPT---HGI-LAPMAAP 460
Query: 349 SPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAI-VEAENSFETDPQENKEEFKAK 407
+ + T+ + ++ A + A + V+ E S P + +
Sbjct: 461 MHHSGESTRQMASEARQTAMKFTNDANETAAANLKALLNVKGEES----PADIASRKRKA 516
Query: 408 LKELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEG 467
+ L++ + + D +D ++L E GWK+RYY KF+ + + E R V Y EG
Sbjct: 517 EQPLIKPEEE---EDEGPKDDIRLYESGWKDRYYRAKFDVGSDD--IEFRHRVAWAYVEG 571
Query: 468 LCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFEL-GHPFKPFNQLLGVFPSA 526
LCWV+ YYY+G SW W++PYHYAPFASD + + +F F PF P QL+ VFP+A
Sbjct: 572 LCWVLRYYYQGCASWDWYFPYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMSVFPAA 631
Query: 527 SSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKI 586
S LP ++KLM +SPI D YP DF +D+NGK+Y+WQG+A LPF+DE RLL ++ +
Sbjct: 632 SKQHLPVEWQKLMIQDDSPIIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSV 691
Query: 587 EHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDG 646
TLT EE +RN+ + +F+ +H + + + K + V L+P L +G
Sbjct: 692 YPTLTAEEKQRNTRGPNRIFIGRNH----KSFEFFQQVAESKSDDLVP----LDPTLLNG 743
Query: 647 MNGYIS--PCAGDPHPPVFRSPVA--SMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFP 702
++G I+ A P P F SPV +D+ N +C +Y+ P+ P IFP
Sbjct: 744 VSGKIAYDSTATAPGLP-FVSPVNHDECQDLPTNCGICVLYEDPEY-------PQDYIFP 795
Query: 703 KKIVQLEDLK-PAPVLWHEDSGRRPHENGRHNPHGTISGR----QLGEAAHRLV 751
++L+ K P L +D R +GR+ P + L ++ HR V
Sbjct: 796 A--LRLDGAKEPEKTLKPDDWNDR--RDGRYQPQVGFNRNAPRGSLDQSGHRQV 845
>sp|Q5AMG5|XRN2_CANAL 5'-3' exoribonuclease 2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAT1 PE=3 SV=3
Length = 968
Score = 479 bits (1234), Expect = e-134, Method: Compositional matrix adjust.
Identities = 265/635 (41%), Positives = 372/635 (58%), Gaps = 48/635 (7%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKL--PPKSDSQVFDSNVITPGTEFMA 58
MNQQR+RRFRA+KDA A + E QE E G + K Q +DSN ITPGT FM
Sbjct: 106 MNQQRARRFRAAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQ-WDSNAITPGTPFMD 164
Query: 59 VLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHC 118
L+ AL+Y++ +L++DPGW ++VI+SDA VPGEGEHK+MS++R QR+ P YDPNT+HC
Sbjct: 165 RLAEALRYWVAYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHC 224
Query: 119 LYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEF 178
+YGLDADLI L LATHE HF +LRE VF QDK F K + +
Sbjct: 225 IYGLDADLIFLGLATHEPHFRVLREDVF--ASQDKKFTI--------------KDQIADA 268
Query: 179 DEKGDEVVVP-KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDF 237
+ GD V KKP+ +LH+ LREYL E P F +LE +DD++F+CFF GNDF
Sbjct: 269 NSNGDTVAKEDKKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDF 328
Query: 238 LPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 297
LPH+P+L++R+ I+ L+ +K+ L Y+T K +L+ VE + + E IF+
Sbjct: 329 LPHLPSLDVRDNGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKN 388
Query: 298 RARLHQRHAERIKREK--------------AQARRGDDVEPLAQPDSLVPVSRFHGSRLA 343
+ QR E KR K +Q +G D PL D +P+ G +
Sbjct: 389 KHAAEQRREENNKRRKLAQEQERALKRVYSSQVSKGKDKAPLT-ADVNMPLMDTSGQNVE 447
Query: 344 --SGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENK 401
+ + S Q+ + N S ++ +L +V+ + + ++
Sbjct: 448 GYANLTNSDIVQNRAILTKAN-LANSDAAAELKKLIDSKKTQVTVVQDQIATDSSANSET 506
Query: 402 EEFKAKLKELLRDKSDAFNSDNPEEDK------VKLGEPGWKERYYEEKFNAKTPEEREE 455
+++L+E+ D S + PEEDK +KL EPG+ +RYYE KF+ ++ EE E+
Sbjct: 507 TTSESELEEIQSDNSLKRKLE-PEEDKQTQSDDIKLWEPGYNKRYYEAKFHYQSDEEIEQ 565
Query: 456 TRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF---NISFELGHP 512
T++DVV Y EG+ WV YYY+G SW W++PYHYAPFA+D +L++ + F+LG P
Sbjct: 566 TKRDVVRHYVEGIAWVALYYYQGCPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEP 625
Query: 513 FKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLP 572
F+PF QL+ V P+AS H LP+ +R LM++P+S I DFYP +FE+DMNGK+ SWQGI LP
Sbjct: 626 FRPFEQLMSVLPAASGHTLPQVFRDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLP 685
Query: 573 FIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 607
FIDE RLLD V+K LT +E RN+ LF+
Sbjct: 686 FIDEKRLLDAVQKKYELLTPDEKSRNTNKEAELFI 720
>sp|Q6BNU7|XRN2_DEBHA 5'-3' exoribonuclease 2 OS=Debaryomyces hansenii (strain ATCC 36239
/ CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RAT1
PE=3 SV=4
Length = 1003
Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust.
Identities = 265/661 (40%), Positives = 377/661 (57%), Gaps = 52/661 (7%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPK-SDSQVFDSNVITPGTEFMAV 59
MNQQRSRRFR+++DA + E+ER +E E G + + +DSN ITPGT FM
Sbjct: 107 MNQQRSRRFRSAQDAKIAHEEKERQIRERESRGESIDDAIKGKKSWDSNAITPGTPFMDS 166
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
L+ AL+Y++ +L DPGW ++VI+SDA VPGEGEHK+MS++R QR+ P YDPNT+HC+
Sbjct: 167 LAQALRYWVAYKLATDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPEYDPNTKHCI 226
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
YGLDADLI L LATHE HF +LRE VF Q + + Q + A++ A
Sbjct: 227 YGLDADLIFLGLATHEPHFRVLREDVFA-NQSRQMRISDQLSMTQDQKDSIAEQDA---- 281
Query: 180 EKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLP 239
KKP+ +LH+ LREYL+ E P+ F DLE +DD++FMCFFVGNDFLP
Sbjct: 282 ---------KKPFLWLHVNVLREYLEIELYNPHLSFPFDLERAIDDWVFMCFFVGNDFLP 332
Query: 240 HMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRA 299
H+P+L++R+ I++L+ +K+ L Y+T +L VE + ++ ED IF+KR
Sbjct: 333 HLPSLDVRDNGIDILVNCWKRMLPKLRDYITCDGNLNLESVEKLLSSLSYKEDEIFRKRH 392
Query: 300 RLHQRHAERIKREKA--------------QARRGDDVEPLAQPDSLVPVSRFHGSRL--- 342
+R E KR K Q +G D PL D +P+ G +
Sbjct: 393 EGEKRREENDKRRKLAQEEEKALKNQYIPQVSKGSDKAPLT-ADINMPLLSTSGDAVEGY 451
Query: 343 ASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLS-------SGATIGAAIVEAENSFET 395
A + + + + + + + K S + AAI E +N +
Sbjct: 452 AQLSNKDIVENRDVITKANMSNADAAAALKKLLDSKNNKESDKNVSASAAIQEQQNKSDI 511
Query: 396 DPQENKEEFKAKLKELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREE 455
+ EN ++ E K D D V++ EPG+++RYY+ KF + EE +
Sbjct: 512 NTTENSKKRPIDQVEAELPKPDE------NGDSVRMWEPGYRQRYYQSKFGVVSEEEINK 565
Query: 456 TRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQF----NISFELGH 511
R+D+V Y EG+ WV+ YYY+G SWQW+YPYHYAPFA+D +++ I F LG
Sbjct: 566 IRRDMVRCYLEGISWVLLYYYQGCPSWQWYYPYHYAPFAADFVNINDIIGEQGIKFTLGE 625
Query: 512 PFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKL 571
PFKP+ QL+ V P+AS H LPE R LM+DP+S I DFYP +F++DMNGK+ SWQGIA L
Sbjct: 626 PFKPYEQLMSVLPAASGHNLPEVLRILMSDPSSEILDFYPEEFQIDMNGKKMSWQGIALL 685
Query: 572 PFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYT--LDEHCKQLKI 629
PFIDE RLL+ ++K H LT++E RN++ ++LF+ + Y D + K+LK
Sbjct: 686 PFIDENRLLEALEKRYHLLTDDERERNTLKNEVLFISNQNKNYKRFYNELYDNNVKELKF 745
Query: 630 K 630
+
Sbjct: 746 R 746
>sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dhp1 PE=1 SV=1
Length = 991
Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust.
Identities = 295/780 (37%), Positives = 423/780 (54%), Gaps = 93/780 (11%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPK-SDSQVFDSNVITPGTEFMAV 59
MNQQRSRRFR+S++AA E + +E +++G + + + +DSN ITPGT FM
Sbjct: 112 MNQQRSRRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDT 171
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
L+ +L+YYI +LN+DP W ++ ILSDA+VPGEGEHKIM ++R QR P YDPNT H +
Sbjct: 172 LAKSLRYYIINKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVV 231
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
YGLDADLIML LATHE HF +LRE VF Q G E + K D
Sbjct: 232 YGLDADLIMLGLATHEPHFRVLREDVFF-----------QQGSTKKTKEERLGIK--RLD 278
Query: 180 EKGDEVVVP-KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFL 238
+ + VP KKP+ +L++ LREYL+ E +PN PF DLE +DD++F FFVGNDFL
Sbjct: 279 DVSETNKVPVKKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFL 338
Query: 239 PHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKR 298
PH+P+L+IR+GA+ L +++ +GGYLT +L R E + AVG+ ED IF++
Sbjct: 339 PHLPSLDIRDGAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDDIFKRL 398
Query: 299 AR----------------------------LHQRHAERIKREKAQARRGDDVEP-----L 325
+ + QR E E + + V+
Sbjct: 399 KQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKT 458
Query: 326 AQPDSLVPVSRFHGSRLASGPSPSPYQQSECVGRLDNGKGTSGRPHKVPRLS--SGATIG 383
+ D+ PV + S S S + R N G S V ++ + + +
Sbjct: 459 QKIDAPAPVDLVNLSEKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALK 518
Query: 384 AAIVEAE--------------NSFE-TDPQENKEEFKAKLKELLRD-----KSDAFNSDN 423
A +V E +++E TD E+ + + + K+ +N
Sbjct: 519 AQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPIDTKVSNVGQKRKAPDSTEEN 578
Query: 424 PEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQ 483
D V+L EPG++ERYYE+KF+ +P+E E+ R + V Y GLCWV+ YYY+G SW
Sbjct: 579 ENTDTVRLYEPGYRERYYEQKFHI-SPDEPEKIR-EAVKHYVHGLCWVLLYYYQGCPSWT 636
Query: 484 WFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPN 543
W+YPYHYAPFA+D KDL ++ FEL PFKP+ QLLGV P+AS + LPE + LMTD N
Sbjct: 637 WYYPYHYAPFAADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDEN 696
Query: 544 SPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMAD 603
S I DFYP +F +D+NGK++ WQG+A LPFIDE RLL+ V KI LTEEE++RN +
Sbjct: 697 SEIIDFYPENFTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGST 756
Query: 604 MLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISP---------- 653
+LF+ HP+ E KQL K+R +L+ +++ G+ G ++
Sbjct: 757 LLFISEHHPM------FSELVKQLYSKKRQGKPLKLSGKMAHGLFGKVNTNDSVIPNVSV 810
Query: 654 -CAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAH-KHVTRPPAGVIFPKKIVQLEDL 711
C D S++D NQ + ++++P +H H + GV P +++ ED+
Sbjct: 811 QCPIDVTSADALQKYGSIDD---NQSISLVFEVPKSHFVHKSMLLRGVKMPNRVLTPEDI 867
>sp|Q9FQ04|XRN4_ARATH 5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1
Length = 947
Score = 436 bits (1120), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/324 (66%), Positives = 257/324 (79%), Gaps = 5/324 (1%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQRSRRFRA+KDAA++ AEEERLR++FE EG+ L K ++ DSNVITPGT FMA+L
Sbjct: 112 MNQQRSRRFRAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAIL 171
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
S+ALQYYI RLN++PGW +KVILSD+NVPGEGEHKIMSY+RLQRNLPG+DPNTRHCLY
Sbjct: 172 SVALQYYIQSRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLY 231
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
GLDADLIML+LATHEVHFSILREV+ PGQQ+KCF+CGQ GH A++C GK+ D
Sbjct: 232 GLDADLIMLSLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAAD- 290
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPH 240
+ + KK YQFL+IW LREYL YE IP+PPF I+ E I+DDF+F+CFFVGNDFLPH
Sbjct: 291 ----IPIHKKKYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPH 346
Query: 241 MPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRAR 300
MPTLEIREGAINLLM VY+KEF A+GGYLTD + L RVEHFIQAV ED+IFQKR R
Sbjct: 347 MPTLEIREGAINLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTR 406
Query: 301 LHQRHAERIKREKAQARRGDDVEP 324
+ Q + ++ R +V P
Sbjct: 407 IKQSMDNNEEMKQRSRRDPSEVPP 430
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/378 (50%), Positives = 243/378 (64%), Gaps = 18/378 (4%)
Query: 398 QENKEEFKAKLKELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETR 457
+N EE K + + RD S+ P +DK+KLGEPG+KERYY EKF+ PEE E+ +
Sbjct: 411 MDNNEEMKQRSR---RDPSEV--PPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIK 465
Query: 458 KDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFN 517
+D+VL+Y EGLCWV YYY+GVCSWQWFYPYHYAPFASDLK+L I+F +G PFKPF+
Sbjct: 466 QDMVLKYVEGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFD 525
Query: 518 QLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEA 577
QL+G P+ASS+ALP YRKLMTDP+SPI FYP DFE+DMNGKR++WQGIAKLPFI+E
Sbjct: 526 QLMGTLPAASSNALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEK 585
Query: 578 RLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLSASIYTLDEHCKQLKIKERVEVKE 637
LL +K+E TLT EE +RNS+M D+L+V +HPL I + + E +
Sbjct: 586 LLLAATRKLEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHEC--LPW 643
Query: 638 RLNPELSDGMNGYISPCAGDPHPPVFRSPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPA 697
++P S GMNG++ + SPV + I N+ L Y P H H++ PP
Sbjct: 644 MIDPNSSQGMNGFLWFSERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPR 703
Query: 698 GVIFPKKIVQLEDLKPAPVLWHED-SGRRPHENGRHNPHGTISGRQLGEAAHRLVANSLQ 756
G I P KI+ D+KP P LWHED S RR R G I+G LGEAAHRL+ N+L
Sbjct: 704 GAIIPDKILTSVDIKPFPPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTL- 762
Query: 757 HMK---------VDRNGY 765
+MK +D NGY
Sbjct: 763 NMKSSTGAASGLIDPNGY 780
>sp|Q6CKX0|XRN2_KLULA 5'-3' exoribonuclease 2 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RAT1 PE=3 SV=3
Length = 992
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 251/670 (37%), Positives = 360/670 (53%), Gaps = 77/670 (11%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQ-VFDSNVITPGTEFMAV 59
MNQQR+RRFR+++DA E++ +E E G + S+ +DSN ITPGT FM
Sbjct: 110 MNQQRARRFRSARDAKLQNEAREQVLREREDYGETIDENVKSKKTWDSNAITPGTPFMDK 169
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
L+ AL+Y+ +L DPGW+ +++I+SDA VPGEGEHKIM+++R QR Y+PNT HC+
Sbjct: 170 LATALRYWTSFKLATDPGWKNLQIIISDATVPGEGEHKIMNFIRSQRADTQYNPNTTHCI 229
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
YGLDADLI L LATHE HF ILRE VF K +P + N + K++ + D
Sbjct: 230 YGLDADLIFLGLATHEPHFKILREDVFANNNYKK----PKPQDMI-NLSEEEKQQLIQQD 284
Query: 180 EKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLP 239
+ KP+ +LHI LREYL E IP+ F+ D E +DD++FMCFF GNDFLP
Sbjct: 285 SE--------KPFLWLHISVLREYLSAELAIPHLSFQFDFERAIDDWVFMCFFCGNDFLP 336
Query: 240 HMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKR- 298
H+P L++RE +I++L+ ++K YLT +L VE ++ +G E +F+K+
Sbjct: 337 HLPCLDVRENSIDILVDIWKTVLPKTKTYLTCDGTLNLEPVEALLEQLGDRETDLFKKKY 396
Query: 299 ---ARLHQRHAERIK-REKAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQS 354
R + H R K + +G P +PV G+ + S +
Sbjct: 397 IQEVRKQEAHDRRKKLKSNPNVSQGKVDRNFMIPLENMPVYDVDGNAAEGSLNLSNKDFA 456
Query: 355 EC---VGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQEN-------KEEF 404
+ + G G + + K+ + + + E +NS + N +E+
Sbjct: 457 NMRKEINLANEGDGEAAKALKLKSEKNSGVVEFSSEELKNSVQLSKTANYDAATSLQEKL 516
Query: 405 KAKLKEL----------LRDKSDAFNSDNPE----------------------------- 425
AK + L+ KS+ +S E
Sbjct: 517 IAKKMAMRDEENAEELSLKRKSEDVDSAEKETSNEPEDDEADYDEDEGSTVPPAVIHTGI 576
Query: 426 --------EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYE 477
++ V+L EPG+ +RYY+ KF+ ++ +KDV+ Y EG+ WV+ YYY+
Sbjct: 577 VKSGFIDTDESVRLYEPGYHDRYYQHKFHVPA-KDIPALQKDVIRCYVEGISWVLLYYYQ 635
Query: 478 GVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRK 537
G SW W+YPYHYAPFA D K++ +I F+LG PF P+ QL+ V P+AS HALPE +R
Sbjct: 636 GCASWTWYYPYHYAPFAQDFKNIKNLDIHFDLGEPFLPYEQLMSVLPAASGHALPEIFRP 695
Query: 538 LMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARR 597
LM+DPNS I DFYP +F VDMNGK+ +WQGIA LPFIDE RLL V++ L++ E R
Sbjct: 696 LMSDPNSEIIDFYPEEFPVDMNGKKMAWQGIALLPFIDETRLLKTVREQYSKLSDSEKAR 755
Query: 598 NSIMADMLFV 607
N D L +
Sbjct: 756 NVRKKDALLI 765
>sp|Q6C961|XRN2_YARLI 5'-3' exoribonuclease 2 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=RAT1 PE=3 SV=3
Length = 1010
Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust.
Identities = 240/668 (35%), Positives = 349/668 (52%), Gaps = 94/668 (14%)
Query: 1 MNQQRSRRFRASKDAA---DSAAEEERLRQEFEREGRKLPPKSDSQV------------- 44
MNQQR+RRFR++KDAA +S E E + E + KS +
Sbjct: 111 MNQQRARRFRSAKDAAIEAESTLESELKAKTIELQSSGEKGKSLETILDEFKQGLVNKPG 170
Query: 45 -FDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVR 103
+DSN ITPGT FM L+ AL+Y++ +LN +PGW +KV++SDA VPGEGEHKIM ++R
Sbjct: 171 KWDSNAITPGTPFMEKLAAALRYWVGYKLNTEPGWRDLKVVISDATVPGEGEHKIMEFIR 230
Query: 104 LQRNLPGYDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHL 163
QR P Y+ NT HC+YGLDADLI L LATHE F +LRE VF +Q+K GH
Sbjct: 231 SQRGDPTYNANTSHCIYGLDADLIFLGLATHEPKFKLLREDVF---RQNKT-----AGH- 281
Query: 164 AANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEI--DLEC 221
KKP+ +L+I LREYL + R +P +I DLE
Sbjct: 282 ------------------------QKKPFIWLNIDILREYLREDLRFTHPQTKIPFDLER 317
Query: 222 IVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVE 281
+DD++F+CFFVGNDFLPH+P ++R+G+IN+L+ +K Y+T +L + +
Sbjct: 318 AIDDWVFLCFFVGNDFLPHLPACDVRDGSINVLVNQWKNGMTRWKDYITCDGHVNLAQAQ 377
Query: 282 HFIQAVGSYEDRIFQKRARLHQRHAERIKREKAQARRGDDVEPLAQPDSLVPVSRFHGSR 341
++ + E RI +HQ +R++ EK+QA + + L R G +
Sbjct: 378 DLLKNFATQEQRIL-----VHQEQ-DRVEYEKSQANKAAKQQAHRDSKKL----RQQGEQ 427
Query: 342 LASGPSPSPYQQSECVGRLD-NGKGTSGRPHKVP---------------RLSSGATIGAA 385
A P + E VG + + G+ + + L G+ GA
Sbjct: 428 AALESMPLYDTKGESVGDVQLTNRELVGQRNDITLANLANQDAADKLRFMLKRGSDTGAE 487
Query: 386 IVEAENSFETDPQENKEEFKAKLKELLRDKSDAFNSD--NPE---------EDKVKLGEP 434
E +P+E E ++ + S A ++D NP D V+ +
Sbjct: 488 EPAKRAKIEEEPKE-AESNSSEATPPTANPSIANDADLSNPNVTVHETTGYADHVQFHKS 546
Query: 435 GWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFA 494
G+ ERYY KF+AK +E + R+ V Y +G+CWV+ YYY G SW WFYPYHYAP A
Sbjct: 547 GYTERYYMNKFHAKE-DEVDNLRRQVAEEYMKGVCWVLMYYYHGCQSWSWFYPYHYAPLA 605
Query: 495 SDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDF 554
D + + F PF+P+ QL+ V P+AS H LP +R LM++ NSPI D+YP +F
Sbjct: 606 GDFDQISNMKVEFGESAPFRPYEQLMSVLPAASGHNLPAVFRPLMSEENSPIIDYYPENF 665
Query: 555 EVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFVLLSHPLS 614
++D+NGK+ W+ + LPFI+ LL+ V+ LT EE RN++ + +++ H L
Sbjct: 666 QLDLNGKKQEWKAVVLLPFINADHLLEHVQAKYTELTPEEKDRNTLREE---IVIFHRLG 722
Query: 615 ASIYTLDE 622
TL++
Sbjct: 723 KYAKTLEK 730
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 236/625 (37%), Positives = 336/625 (53%), Gaps = 69/625 (11%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQRSRRFR +KDA D+ R + ER G P + FDSN ITPGT FM +
Sbjct: 94 MNQQRSRRFRTAKDAHDA-------RLKAERNGEDFPEEQ----FDSNCITPGTTFMERV 142
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
S L Y+IH ++ ND W+ I+VI S + PGEGEHKIM Y+R Q+ P Y+PNTRHCLY
Sbjct: 143 SRQLYYFIHKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRTQKAQPSYNPNTRHCLY 202
Query: 121 GLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
GLDADLIML L +H+ HF +LRE V F P +++ +K A +
Sbjct: 203 GLDADLIMLGLLSHDPHFCLLREEVTFGPASRNR-----------------SKELAHQ-- 243
Query: 180 EKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEI--DLECIVDDFIFMCFFVGNDF 237
+ LH+ LREYL++EF+ F DLE I+DDFI + FFVGNDF
Sbjct: 244 -----------KFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDF 292
Query: 238 LPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 297
LPH+P L I EGA+ L+ ++YKK + GGY+ + ++ R+E + + ++E IF+
Sbjct: 293 LPHLPGLHINEGALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFKA 352
Query: 298 RARLHQRHAERIKRE----KAQARRGDDVEPLA--QPDSLVPVSRFHGSR---LASGPSP 348
+ + K K +D++ + Q + + + +F SR + +
Sbjct: 353 EVSETKNNGNSDKPSFDFLKYITESTNDIKAMTGEQKNYFLQIKKFLSSREPFIDFSANI 412
Query: 349 SPYQQSECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAENSFETDPQENKEEFKAKL 408
S Q + RL N S K+ ++ + + E + E + + ++E + L
Sbjct: 413 SSVDQ-RFLRRLCNDLHLSFS--KIIKVDGTHLLRITFRDLEFNDEDEDEIEQDEIERVL 469
Query: 409 KEL----LRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRY 464
++ L ++ A N E+D ++ WK+ YY K +E E K + RY
Sbjct: 470 QKYDNIPLLNEEQALKEKNVEKDFIQ-----WKDDYYRSKVGFSYYDE--EALKAMAERY 522
Query: 465 TEGLCWVMHYYYEGVCSWQWFYPYHYAPFASD-LKDLDQFNISFELGHPFKPFNQLLGVF 523
EGL WV+ YYY G SW W+Y YH+AP SD LK LD I F++G PF+PF QL+ V
Sbjct: 523 VEGLQWVLFYYYRGCQSWGWYYNYHFAPKISDVLKGLD-VKIDFKMGTPFRPFEQLMAVL 581
Query: 524 PSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEV 583
P+ S +P +R LM + SPI DFYP +F +D NGK SW+ + +PFIDE RL+D +
Sbjct: 582 PARSQALVPPCFRDLMVNSESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDAL 641
Query: 584 KKIEHTLTEEEARRNSIMADMLFVL 608
+ LTEEE +RNS A +F L
Sbjct: 642 ASKDKFLTEEERKRNSFNAPTVFSL 666
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 344 bits (883), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 219/631 (34%), Positives = 336/631 (53%), Gaps = 70/631 (11%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQR+RRFR + DA E+ L++ E G ++P + FDSN ITPGTEFMA L
Sbjct: 94 MNQQRARRFRTAMDA------EKALKKAIEN-GDEIP---KGEPFDSNSITPGTEFMAKL 143
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
+ LQY+IH +++ND W ++++I S VPGEGEHKIM+++R ++ ++ NTRHC+Y
Sbjct: 144 TKNLQYFIHDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQNTRHCIY 203
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
GLDADLIML L+TH HF++LRE V T G++ N E K+
Sbjct: 204 GLDADLIMLGLSTHGPHFALLREEV-TFGRR--------------NSEKKS--------- 239
Query: 181 KGDEVVVPKKPYQFLHIWTLREYLDYEFR--IPNPPFEIDLECIVDDFIFMCFFVGNDFL 238
+ + + LH+ LREY++ EF+ FE + E I+DDFI + F +GNDFL
Sbjct: 240 ------LEHQNFYLLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFL 293
Query: 239 PHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKR 298
P++P L + +GA +L+ +K+ GY+ + K +L+R+ ++ + +E F+K
Sbjct: 294 PNLPDLHLNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEKD 353
Query: 299 ---ARLHQRHAERIKRE--KAQARRGDDVEPLAQPDSLVPVSRFHGSRLASGPSPSPYQQ 353
+ E I E + + R G + Q + + + +L SP
Sbjct: 354 DIDVEWFNKQLENISLEGERKRQRVGKKLLVKQQKKLIGSIKPWLMEQLQEKLSPD--LP 411
Query: 354 SECVGRLDNGKGTSGRPHKVPRLSSGATIGAAIVEAEN----SFETD-----PQENKEEF 404
E + L+ K + H +G I +++ S + D P E +EEF
Sbjct: 412 DEEIPTLELPKDLDMKDHLEFLKEFAFDLGLFITHSKSKGSYSLKMDLDSINPDETEEEF 471
Query: 405 KAK---LKELLRDKSDAFNSDNPEE---DKVKLGE--PGWKERYYEEKFNAKTPEEREET 456
+ + +++ ++ +A ++ EE +K E WK YY +K T + EE
Sbjct: 472 QNRVNSIRKTIKKYQNAIIVEDKEELETEKTIYNERFERWKHEYYHDKLKFTT--DSEEK 529
Query: 457 RKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDL-KDLDQFNISFELGHPFKP 515
+D+ Y EGL WV++YYY G SW W+YP+HYAP SDL K LDQ +I F+L PF P
Sbjct: 530 VRDLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRISDLAKGLDQ-DIEFDLSKPFTP 588
Query: 516 FNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFID 575
F QL+ V P S + +P +R LM D SPI DFYP + ++D NGK W+ + + F+D
Sbjct: 589 FQQLMAVLPERSKNLIPPAFRPLMYDEQSPIHDFYPAEVQLDKNGKTADWEAVVLISFVD 648
Query: 576 EARLLDEVKKIEHTLTEEEARRNSIMADMLF 606
E RL++ ++ L+ EE RN D+++
Sbjct: 649 EKRLIEAMQPYLRKLSPEEKTRNQFGKDLIY 679
>sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=RAT1 PE=3 SV=3
Length = 1233
Score = 332 bits (852), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 166/331 (50%), Positives = 232/331 (70%), Gaps = 13/331 (3%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLP--PKSDSQVFDSNVITPGTEFMA 58
MNQQRSRRFRA+K+A + EE+ E++ +G K + +DSN ITPGT FM
Sbjct: 116 MNQQRSRRFRAAKEAREKHEEEQAALAEWKAKGLGATDDEKKSKRAWDSNAITPGTPFMD 175
Query: 59 VLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHC 118
+L+ +L+Y++ ++N+DPGW+ I+VI+SDA+VPGEGEHKIM ++R QR+ P +DPNT+H
Sbjct: 176 LLAASLRYWVAQKINSDPGWKDIQVIISDASVPGEGEHKIMEHIRRQRSHPEHDPNTKHV 235
Query: 119 LYGLDADLIMLALATHEVHFSILREVVFTPGQQDK-CFLCGQPGHLAANCEGKAKRKAGE 177
+YGLDADLIML+LATHE +F +LRE VF + K C LCGQPGH AA+C G AK+K+G+
Sbjct: 236 IYGLDADLIMLSLATHEPYFKVLREDVFAADNKPKTCNLCGQPGHFAASCTGAAKKKSGQ 295
Query: 178 FDEKGDEVVVP----KKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFV 233
DE + P KKP+ FL + TLREYL+ E IP PF DLE +DD++F+ FFV
Sbjct: 296 HDE-----IAPTPPEKKPFIFLDVATLREYLEVELNIPQLPFAFDLERAIDDWVFLIFFV 350
Query: 234 GNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDR 293
GNDFLPH+P+LEIR+GAI+ L+ ++KKE A+GGYLT+ + L R + + + S ED
Sbjct: 351 GNDFLPHLPSLEIRDGAIDTLLRIWKKELPAMGGYLTNHGRVELGRAQLILSGLASEEDE 410
Query: 294 IF-QKRARLHQRHAERIKREKAQARRGDDVE 323
IF +++ +R R +RE+ Q RR +++
Sbjct: 411 IFRRRKEDEDRRETNRKRREEMQQRRDKELD 441
Score = 244 bits (622), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 179/293 (61%), Gaps = 13/293 (4%)
Query: 426 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 485
ED VK+ EPG++ERYY+EKF + + R+ VV Y EGLCWV+ YYY+GV SWQW+
Sbjct: 660 EDTVKMWEPGYRERYYKEKFGVDLSDT--DFRRSVVKSYIEGLCWVLAYYYQGVPSWQWY 717
Query: 486 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 545
YP+H++PFA+D +DL+ +I F+LG PFKPF QL+GV P+ S ++P + LMT+ +S
Sbjct: 718 YPFHFSPFAADFEDLESLDIQFQLGSPFKPFEQLMGVLPADSRASIPPAFHPLMTESDSD 777
Query: 546 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 605
I DFYP++FE+DMNGK+ +WQG+A LPFIDE RLLD +K+ L+E+E RRN + L
Sbjct: 778 IIDFYPSEFEIDMNGKKMAWQGVALLPFIDEKRLLDALKERYPLLSEDEVRRNGFGNNTL 837
Query: 606 FV----LLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPP 661
FV L L IY + +RV V NP LS G+ G++ P
Sbjct: 838 FVGNESRLYDFLCEEIYAKKRTTDDGETPKRVAV----NPALSGGITGFVKPDPVCVPGS 893
Query: 662 VFRSPVAS--MEDIMGNQVLCAIYKLPDAHK-HVTRPPAGVIFPKKIVQLEDL 711
F SP+ S + DI ++ + +Y P+ H + G+ PK+I+ ++
Sbjct: 894 TFNSPLTSQALHDIHNDRSISVLYDFPEQKTPHRSVLLKGLKPPKRILSAAEI 946
>sp|Q2UCP5|XRN2_ASPOR 5'-3' exoribonuclease 2 OS=Aspergillus oryzae (strain ATCC 42149 /
RIB 40) GN=rat1 PE=3 SV=3
Length = 1035
Score = 329 bits (844), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 154/319 (48%), Positives = 220/319 (68%), Gaps = 6/319 (1%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGR---KLPPKSDSQVFDSNVITPGTEFM 57
MNQQR+RRFR++++A ++ ++E R++F ++ + ++ + + +DSNVITPGT FM
Sbjct: 111 MNQQRARRFRSAQEAKEADEKKEEFRKQFLKKSKGDQEIHEEVIQKTWDSNVITPGTPFM 170
Query: 58 AVLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRH 117
+L+ +L+Y+I +LN DP WEK+K+I+SDA VPGEGEHKIM +VR QR P +DPNTRH
Sbjct: 171 DILAASLRYWIAYKLNTDPAWEKLKIIISDATVPGEGEHKIMEFVRSQRAAPEHDPNTRH 230
Query: 118 CLYGLDADLIMLALATHEVHFSILRE-VVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAG 176
+YGLDADLIML LATHE HF +LRE V F + C LCGQ GH A C G+AK K G
Sbjct: 231 VIYGLDADLIMLGLATHEPHFRVLREDVFFQESKARTCHLCGQAGHKAEECRGQAKEKNG 290
Query: 177 EFDEKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGND 236
+FDEKG + KP+ +L++ LREYL E +P+ PF DLE +DD++FMCFFVGND
Sbjct: 291 QFDEKGKGTSL--KPFIWLNVSILREYLAVELYVPHQPFPFDLERALDDWVFMCFFVGND 348
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
FLPH+P+L+IRE I+ L+A+++ +GGYLT ++ + +Q + ED IF+
Sbjct: 349 FLPHLPSLDIRENGIDTLIAIWRDNIPVMGGYLTKDGHVEFKKAQLILQGLAKQEDAIFR 408
Query: 297 KRARLHQRHAERIKREKAQ 315
+R ++ ++ KR K +
Sbjct: 409 RRRQVEEKKLANEKRRKEE 427
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 173/293 (59%), Gaps = 19/293 (6%)
Query: 427 DKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFY 486
D V+L E G+ +RYYE+KF P+++E R V Y EGL WV+ YY++G SW W+Y
Sbjct: 583 DTVRLWEEGYADRYYEQKFGVD-PQDKE-FRHKVARAYAEGLAWVLLYYFQGCPSWNWYY 640
Query: 487 PYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPI 546
PYHYAPFA+D D+ +SFE G PFKPF QL+GV P++S+HA+PE + LM DP S I
Sbjct: 641 PYHYAPFAADFVDIGDMELSFEKGTPFKPFEQLMGVLPASSNHAIPEVFHDLMQDPESEI 700
Query: 547 SDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLF 606
DFYP DF VD+NGK+++WQG+ LPFIDE RLL ++K L+++E RN++ ++L
Sbjct: 701 IDFYPEDFAVDLNGKKFAWQGVILLPFIDEKRLLAAMEKKYPLLSDDERHRNTVGREVLL 760
Query: 607 VLLSHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAG-DPHPPVFRS 665
+ HPL + K++ K LN +S+G+ G + PH S
Sbjct: 761 LSDGHPLYQDL------VANFYSKKQGAPKYTLNMRVSEGLAGRVERNETYIPH----SS 810
Query: 666 PVASMED-----IMGNQVLCAIYKLPDA-HKHVTRPPAGVIFPKKIVQLEDLK 712
V+S+E+ + ++ L Y++P + H H + GV FP + D++
Sbjct: 811 LVSSLEEYGMPTLEDDRSLTVNYEIPKSNHIHKSMLLRGVKFPPPALDNADIQ 863
>sp|P0CL88|XRN2_CRYNJ 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=RAT1 PE=3
SV=1
Length = 1127
Score = 313 bits (801), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 220/328 (67%), Gaps = 11/328 (3%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKS-DSQVFDSNVITPGTEFMAV 59
MNQQRSRRFRA+++AAD E + FE G + ++ + + +D+N ITPGT FM +
Sbjct: 116 MNQQRSRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDL 175
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
LSI+L+Y++ +L DPGW+ +K+ILSD++VPGEGEHKIM ++R QR+ P +D NT H +
Sbjct: 176 LSISLKYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVI 235
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQD--KCFLCGQPGHLAANCEGKAKRKAGE 177
YGLDADLIML+LATHE HF +LRE VF + C CG+ GH+AANC+ K K
Sbjct: 236 YGLDADLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFK--- 292
Query: 178 FDEKGDEVVVPK--KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGN 235
D EV + KP+ FL + LREYL E +P PF DLE +DD+IFM FFVGN
Sbjct: 293 -DPNVAEVAKTEDPKPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGN 351
Query: 236 DFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIF 295
DFLPH+P+LEIREGAI++L+ +++ E +GGYLT+ K +L R + ++ + ED IF
Sbjct: 352 DFLPHLPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIF 411
Query: 296 QKRARLHQR--HAERIKREKAQARRGDD 321
QKR +R H+++ +R + R+ +D
Sbjct: 412 QKRKDDEERQEHSQKRRRIEEHKRQDED 439
Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 165/273 (60%), Gaps = 19/273 (6%)
Query: 426 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 485
ED VKL EPG++ERYYE+KF K ERE K V Y EGLCWV+ YYY+GV +W WF
Sbjct: 686 EDDVKLWEPGYRERYYEKKFGVKL-SEREFIDK-VTKSYMEGLCWVLEYYYQGVPAWDWF 743
Query: 486 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 545
YPYHYAPFA D +D+ +I FE PFKPF QLLGVFP+AS LPE + LM D +SP
Sbjct: 744 YPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLMIDEDSP 803
Query: 546 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 605
I DFYP DFE+DMNGK+ +WQG+A LPFID+ RLL +K E L+++E RRNS +++
Sbjct: 804 ILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNSWGDNVM 863
Query: 606 FVLLSHPLSASIYTLDEHCKQ---LKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPV 662
F+ +PL D C + L+ K+ + + + S G+ G + P
Sbjct: 864 FIANENPL------YDLFCDKLYGLRAKDPIPIDTK----ASYGITGSVLPDPNCVPAST 913
Query: 663 FRSPVASME---DIMGNQVLCAIYKLP-DAHKH 691
F +P+ S+ D+ N + Y P AH H
Sbjct: 914 FDTPIPSISECPDLNPNDSISVRYYFPRQAHPH 946
>sp|P0CL89|XRN2_CRYNB 5'-3' exoribonuclease 2 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=RAT1 PE=3 SV=1
Length = 1130
Score = 313 bits (801), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 220/328 (67%), Gaps = 11/328 (3%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKS-DSQVFDSNVITPGTEFMAV 59
MNQQRSRRFRA+++AAD E + FE G + ++ + + +D+N ITPGT FM +
Sbjct: 116 MNQQRSRRFRAAQEAADKEEERREAIKLFEAMGHAVSEETANHKSWDTNAITPGTPFMDL 175
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
LSI+L+Y++ +L DPGW+ +K+ILSD++VPGEGEHKIM ++R QR+ P +D NT H +
Sbjct: 176 LSISLKYWVSHKLTTDPGWKDLKIILSDSSVPGEGEHKIMDWIRRQRSYPTWDANTSHVI 235
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQD--KCFLCGQPGHLAANCEGKAKRKAGE 177
YGLDADLIML+LATHE HF +LRE VF + C CG+ GH+AANC+ K K
Sbjct: 236 YGLDADLIMLSLATHEPHFRVLREDVFAQSSKGPHACKNCGKVGHIAANCKSDKKFK--- 292
Query: 178 FDEKGDEVVVPK--KPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGN 235
D EV + KP+ FL + LREYL E +P PF DLE +DD+IFM FFVGN
Sbjct: 293 -DPNVAEVAKTEDPKPFIFLDVACLREYLAVELVVPGMPFPFDLELAIDDWIFMIFFVGN 351
Query: 236 DFLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIF 295
DFLPH+P+LEIREGAI++L+ +++ E +GGYLT+ K +L R + ++ + ED IF
Sbjct: 352 DFLPHLPSLEIREGAIDVLLKIWRAELPRMGGYLTNHGKVNLDRAQVILEGLAKSEDEIF 411
Query: 296 QKRARLHQR--HAERIKREKAQARRGDD 321
QKR +R H+++ +R + R+ +D
Sbjct: 412 QKRKDDEERQEHSQKRRRIEEHKRQDED 439
Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 126/272 (46%), Positives = 165/272 (60%), Gaps = 14/272 (5%)
Query: 426 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 485
ED VKL EPG++ERYYE+KF K ERE K V Y EGLCWV+ YYY+GV +W WF
Sbjct: 686 EDDVKLWEPGYRERYYEKKFGVKL-SEREFIDK-VTKSYMEGLCWVLEYYYQGVPAWDWF 743
Query: 486 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 545
YPYHYAPFA D +D+ +I FE PFKPF QLLGVFP+AS LPE + LM D +SP
Sbjct: 744 YPYHYAPFAQDFRDVGSMDIKFETSIPFKPFAQLLGVFPAASRIHLPEPLQTLMIDEDSP 803
Query: 546 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 605
I DFYP DFE+DMNGK+ +WQG+A LPFID+ RLL +K E L+++E RRNS +++
Sbjct: 804 ILDFYPPDFEIDMNGKKMAWQGVALLPFIDQNRLLTALKSKEELLSDDEKRRNSWGDNVM 863
Query: 606 FVLLSHPLSASIYTLDEHCKQLKIKERVEVKE--RLNPELSDGMNGYISPCAGDPHPPVF 663
F+ +PL D C +L +V + ++ + S G+ G + P F
Sbjct: 864 FIANENPL------YDLFCDKLYGLRAKDVSKPIPIDTKASYGITGSVLPDPNCVPASTF 917
Query: 664 RSPVASME---DIMGNQVLCAIYKLP-DAHKH 691
+P+ S+ D+ N + Y P AH H
Sbjct: 918 DTPIPSISECPDLNPNDSISVRYYFPRQAHPH 949
>sp|Q9VM71|XRN2_DROME 5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1
PE=1 SV=2
Length = 908
Score = 306 bits (783), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 160/321 (49%), Positives = 203/321 (63%), Gaps = 2/321 (0%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPP-KSDSQVFDSNVITPGTEFMAV 59
MNQQRSRRFRA+K+ + E R+R+E G KLPP K + FDSN ITPGT FM
Sbjct: 112 MNQQRSRRFRAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDR 171
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
LS L Y++H R NN+P W+ IKVILSDANVPGEGEHKIM Y+R QR P +DPNT+H L
Sbjct: 172 LSKCLHYFVHDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVL 231
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
G DADLIML LATHE +F+I+RE F P + C +C GH C G +
Sbjct: 232 CGADADLIMLGLATHEPNFTIIRE-EFLPNKPRPCDICNGFGHEMDKCVGLGATAPTSAN 290
Query: 180 EKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLP 239
K D + + + F+ + LREYL +PN PFE E +DD++FMCFFVGNDFLP
Sbjct: 291 FKPDVPIGAEVKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLP 350
Query: 240 HMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRA 299
H+P+LEIREGA++ L+ +YKK GYLTD +L RV+ + +G+ ED+IF+ R
Sbjct: 351 HLPSLEIREGAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQ 410
Query: 300 RLHQRHAERIKREKAQARRGD 320
R ++ R K K Q R D
Sbjct: 411 RREEQFKARDKARKRQERNQD 431
Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 188/334 (56%), Gaps = 30/334 (8%)
Query: 429 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 488
V+L E G+K+RYYE KF+ + + R V L+Y GLCWV+ YYY+G SW W++PY
Sbjct: 488 VRLWEDGFKDRYYESKFDVAPGNQ--QFRYAVALQYVRGLCWVLKYYYQGCASWNWYFPY 545
Query: 489 HYAPFASDLKDLDQFNISFELG-HPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPIS 547
HYAPFASD ++ + FE G PF P QL+GVFP+ASS +PE + KLM+DP SPI
Sbjct: 546 HYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESPII 605
Query: 548 DFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 607
DFYP DF++D+NGK+++WQG+A LPF+DE RL + LT EE +RN + L++
Sbjct: 606 DFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYLYI 665
Query: 608 LLSHPLSASIYTLDEHCKQL-KIKERVEVKERLNPELS-DGMNGYISPCAGDPHPP-VFR 664
P H K++ KI E+ + E + +S DGM G + + V +
Sbjct: 666 SNQSP----------HYKKVKKISEKDD--ESVCKAISFDGMRGTLGKTELNTAISGVLK 713
Query: 665 SPVASMEDIMGNQVLCAIYKLPDAHKHVTRPPAGVIFPKKIVQLED-LKPAPVLWHEDSG 723
SP++ + DI N + ++ P+ + IF K +LE+ + P VL +E SG
Sbjct: 714 SPISGLSDINDNITVTTTFRDPEYDED-------YIFEAK--RLENAVDPPQVLPNEQSG 764
Query: 724 RRPHENGRHNPHGTISGRQLGEAAHRLVANSLQH 757
+ N H T + + ++ HR++ +++
Sbjct: 765 NKHRPVIGFNSHLTRA--YVPDSGHRMLNAGIRN 796
>sp|Q6FKN6|XRN2_CANGA 5'-3' exoribonuclease 2 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RAT1 PE=3
SV=3
Length = 1018
Score = 273 bits (698), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 145/322 (45%), Positives = 202/322 (62%), Gaps = 26/322 (8%)
Query: 1 MNQQRSRRFRASKDA-ADSAAEEERLRQEFEREGRKLPPK-SDSQVFDSNVITPGTEFMA 58
MNQQRSRRFR+++DA ++ A EE +RQ+ E+ G+ + + + +DSN ITPGT FM
Sbjct: 110 MNQQRSRRFRSARDAEIENEAREEIMRQK-EQLGQIIDDSVKNKKTWDSNAITPGTPFMD 168
Query: 59 VLSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHC 118
L+IAL+Y+ +L DPGW+ ++VI+SDA VPGEGEHKIM+++R QR P Y+PNT HC
Sbjct: 169 KLAIALRYWTAFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHC 228
Query: 119 LYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEF 178
+YGLDADLI L LATHE HF ILRE VF + + K
Sbjct: 229 IYGLDADLIFLGLATHEPHFKILREDVFAQDNRKR---------------NNVKDTIDMT 273
Query: 179 DEKGDEVVV--PKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGND 236
DE+ D + +KP+ +LHI LREYL E P PF DLE +DD++FMCFF GND
Sbjct: 274 DEEKDLIRKQDSEKPFLWLHISVLREYLSAELWTPKLPFPFDLERAIDDWVFMCFFCGND 333
Query: 237 FLPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQ 296
FLPH+P L++RE +I++L+ ++K L Y+T K +L VE ++ +G+ E IF+
Sbjct: 334 FLPHLPCLDVRENSIDILLDIWKSILPRLKTYMTCDGKLNLESVEMVLKELGNREGDIFK 393
Query: 297 KRARLHQRHAERIKREKAQARR 318
RH + I++++A RR
Sbjct: 394 T------RHIQEIRKKEANERR 409
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 121/182 (66%), Gaps = 1/182 (0%)
Query: 426 EDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWF 485
++ VKL EPG+ +RYY EKF+ + P + K +V Y EG+ WV+ YYY+G SW W+
Sbjct: 594 DEAVKLFEPGYHDRYYIEKFHIE-PNQIPALSKHMVKCYIEGVSWVLMYYYQGCASWTWY 652
Query: 486 YPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSP 545
YPYHYAP A D D +I FELG PF P+ QL+ V P+AS H LPE +R LM+ +S
Sbjct: 653 YPYHYAPLAEDFVDFHDLDIKFELGEPFLPYEQLMSVLPAASGHNLPEVFRPLMSSEDSE 712
Query: 546 ISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADML 605
I DFYPT+F +DMNGK+ SWQGIA LPFIDE RLL + L+E+E RRN+ +L
Sbjct: 713 IIDFYPTEFPIDMNGKKMSWQGIALLPFIDETRLLTATRNQYKFLSEDEKRRNTRNDPVL 772
Query: 606 FV 607
+
Sbjct: 773 LI 774
>sp|Q02792|XRN2_YEAST 5'-3' exoribonuclease 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAT1 PE=1 SV=3
Length = 1006
Score = 271 bits (694), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/334 (44%), Positives = 202/334 (60%), Gaps = 16/334 (4%)
Query: 1 MNQQRSRRFRASKDA-ADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAV 59
MNQQR+RRFR+++DA ++ A EE +RQ E + + +DSN ITPGT FM
Sbjct: 110 MNQQRARRFRSARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGTPFMDK 169
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
L+ AL+Y+ +L DPGW+ ++VI+SDA VPGEGEHKIM+++R QR P Y+PNT HC+
Sbjct: 170 LAAALRYWTAFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCI 229
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
YGLDADLI L LATHE HF ILRE VF + + +L + K +F
Sbjct: 230 YGLDADLIFLGLATHEPHFKILREDVFAQDNRKR-------NNLKDTINMTEEEK--QFL 280
Query: 180 EKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLP 239
+K + ++P+ +LHI LREYL E +P PF DLE +DD++FMCFF GNDFLP
Sbjct: 281 QKQNS----EQPFLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLP 336
Query: 240 HMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRA 299
H+P L++RE +I++L+ ++K L Y+T +L VE +Q +GS E IF+ R
Sbjct: 337 HLPCLDVRENSIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTRH 396
Query: 300 RLHQRHAERIKREKAQAR--RGDDVEPLAQPDSL 331
R E +R KAQ +G D P + L
Sbjct: 397 IQEARKKEAFERRKAQKNMSKGQDRHPTVATEQL 430
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/184 (52%), Positives = 125/184 (67%), Gaps = 5/184 (2%)
Query: 415 KSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHY 474
K+ F++D + VKL EPG+ ERYY KF+ TP++ E+ RKD+V Y EG+ WV+ Y
Sbjct: 587 KNGVFDTD----EFVKLFEPGYHERYYTAKFHV-TPQDIEQLRKDMVKCYIEGVAWVLMY 641
Query: 475 YYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEH 534
YY+G SW WFYPYHYAP A+D I FE G PF P+ QL+ V P+AS HALP+
Sbjct: 642 YYQGCASWNWFYPYHYAPLATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKI 701
Query: 535 YRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEE 594
+R LM++P+S I DFYP +F +DMNGK+ SWQGIA LPFID+ RLL V+ L++ E
Sbjct: 702 FRSLMSEPDSEIIDFYPEEFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAE 761
Query: 595 ARRN 598
RN
Sbjct: 762 RARN 765
>sp|Q74ZA0|XRN2_ASHGO 5'-3' exoribonuclease 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=RAT1 PE=3 SV=4
Length = 945
Score = 269 bits (687), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 142/319 (44%), Positives = 202/319 (63%), Gaps = 20/319 (6%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQ-VFDSNVITPGTEFMAV 59
MNQQRSRRFR+++DA + E+ R+ E E G + ++ +D+N ITPGT FM
Sbjct: 110 MNQQRSRRFRSARDAKLANEEKARVLAEREAYGEMIDDAVKAKKSWDTNAITPGTPFMDK 169
Query: 60 LSIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCL 119
L+ AL+Y+ +L DPGW+ ++VI+SDA VPGEGEHKIM+++R QR Y+PNT HC+
Sbjct: 170 LAAALRYWTSFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADVQYNPNTTHCI 229
Query: 120 YGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFD 179
YGLDADLI L LATHE HF ILRE VF QD Q H + + K+ E D
Sbjct: 230 YGLDADLIFLGLATHEPHFKILREDVFA---QDNRRRPRQ--HDMMDMSAEEKQALIEQD 284
Query: 180 EKGDEVVVPKKPYQFLHIWTLREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLP 239
+ KP+ +LH+ LREYL E +P PF DLE +DD++FMCFF GNDFLP
Sbjct: 285 AE--------KPFLWLHVSVLREYLSAELLVPRLPFHFDLERAIDDWVFMCFFCGNDFLP 336
Query: 240 HMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQKRA 299
H+P+L++RE +I++L+ ++K +L YLT K +L+ VE + +G+ E IF+K
Sbjct: 337 HLPSLDVRENSIDILVDIWKAVLPSLKTYLTCDGKLNLKGVEKVLAQLGNRESDIFKK-- 394
Query: 300 RLHQRHAERIKREKAQARR 318
++ + +++++AQ RR
Sbjct: 395 ----KYEQELRKKEAQERR 409
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 429 VKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPY 488
V+L EPG+ +RYY+ KF+ T + RK VV Y EG+ WV+ YYY+G SW W+YPY
Sbjct: 583 VRLFEPGYHDRYYQAKFHVPT-GSIDALRKKVVRSYVEGISWVLLYYYQGCPSWTWYYPY 641
Query: 489 HYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYRKLMTDPNSPISD 548
HYAPFASD + +++F+LG PF P+ QL+ V P+ASSH LP+ +R LM+DP S I D
Sbjct: 642 HYAPFASDFTGISDLSVTFDLGEPFLPYEQLMSVLPAASSHNLPDVFRSLMSDPESEIYD 701
Query: 549 FYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNSIMADMLFV 607
FYP +F +DMNG++ +W+ + LPFIDE RLL V++ L+E E RN ++L +
Sbjct: 702 FYPEEFPIDMNGEKMAWKALVLLPFIDETRLLAAVRQKYPLLSEAERARNVRRDEVLLI 760
>sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1 PE=1 SV=1
Length = 1706
Score = 219 bits (558), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 171/300 (57%), Gaps = 43/300 (14%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQR RRFR++K+A E+++++ E+ G LP ++ FDSN ITPGTEFMA L
Sbjct: 94 MNQQRGRRFRSAKEA------EDKIKKAIEK-GETLPTEAR---FDSNCITPGTEFMARL 143
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPNTRHCLY
Sbjct: 144 HEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLY 203
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
GLDADLIML L +HE HFS+LRE V G+
Sbjct: 204 GLDADLIMLGLTSHEAHFSLLREEVRFGGK------------------------------ 233
Query: 181 KGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDF 237
K V P++ + LH+ +REY+DYEF + F+ D+E I+DD+I M F VGNDF
Sbjct: 234 KTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDF 293
Query: 238 LPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 297
+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F +
Sbjct: 294 IPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 3/189 (1%)
Query: 410 ELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLC 469
E++ K D + ++D + +K YY K + + D Y + +
Sbjct: 408 EMITSK-DNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQ 464
Query: 470 WVMHYYYEGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSH 529
W++HYYY GV SW W+YPYHYAPF SD+ ++ I FELG PFKPF QLL V P+AS +
Sbjct: 465 WILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKN 524
Query: 530 ALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHT 589
LP Y+ LMT+ +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+
Sbjct: 525 LLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHS 584
Query: 590 LTEEEARRN 598
L +EE +RN
Sbjct: 585 LKKEERKRN 593
>sp|P97789|XRN1_MOUSE 5'-3' exoribonuclease 1 OS=Mus musculus GN=Xrn1 PE=1 SV=1
Length = 1719
Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 170/300 (56%), Gaps = 43/300 (14%)
Query: 1 MNQQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVL 60
MNQQR RRFR++K+A E+++++ E+ G LP ++ FDSN ITPGTEFMA L
Sbjct: 94 MNQQRGRRFRSAKEA------EDKIKKAIEK-GETLPTEAR---FDSNCITPGTEFMARL 143
Query: 61 SIALQYYIHLRLNNDPGWEKIKVILSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLY 120
L+Y+++++++ D W+ + + S PGEGEHKIM ++R ++ P +DPNTRHCLY
Sbjct: 144 HEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLY 203
Query: 121 GLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDE 180
GLDADLIML L +HE HFS+LRE V G+
Sbjct: 204 GLDADLIMLGLTSHEAHFSLLREEVRFGGK------------------------------ 233
Query: 181 KGDEVVVPKK-PYQFLHIWTLREYLDYEFRI--PNPPFEIDLECIVDDFIFMCFFVGNDF 237
K V P++ + LH+ +REY+DYEF F+ D+E I+DD+I M F VGNDF
Sbjct: 234 KTQRVCAPEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDF 293
Query: 238 LPHMPTLEIREGAINLLMAVYKKEFRALGGYLTDGSKPSLRRVEHFIQAVGSYEDRIFQK 297
+PH+P L I A+ LL Y LGGY+ + +L R E ++ + ++ F +
Sbjct: 294 IPHLPHLHINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSE 353
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 2/182 (1%)
Query: 417 DAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKTPEEREETRKDVVLRYTEGLCWVMHYYY 476
D F + ++D + +K YY K + E + Y + + W++HYYY
Sbjct: 414 DNFEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSD--EFLANQAACYVQAIQWILHYYY 471
Query: 477 EGVCSWQWFYPYHYAPFASDLKDLDQFNISFELGHPFKPFNQLLGVFPSASSHALPEHYR 536
GV SW W+YPYHYAPF SD++ + I FELG PFKPF QLL V PSAS + LP Y+
Sbjct: 472 HGVQSWSWYYPYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQ 531
Query: 537 KLMTDPNSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEARLLDEVKKIEHTLTEEEAR 596
LMT +SPI ++YP DF+ D+NGK+ W+ + +PFIDE RLL+ ++ H+L +EE +
Sbjct: 532 HLMTSEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERK 591
Query: 597 RN 598
RN
Sbjct: 592 RN 593
>sp|Q9QSK5|EXON_IIV6 Putative exonuclease 012L OS=Invertebrate iridescent virus 6
GN=IIV6-012L PE=3 SV=1
Length = 624
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 118/305 (38%), Gaps = 99/305 (32%)
Query: 3 QQRSRRFRASKDAADSAAEEERLRQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSI 62
QQR RRF A+ D E F + K ++ FDSN I+PGTEFM L
Sbjct: 101 QQRQRRFLAAHDRKKPGTE-------FNFDCNK----GNTSKFDSNSISPGTEFMHNLGR 149
Query: 63 ALQYYIHLRLNNDPG------------------------------WEKIKVILSDANVPG 92
+ IH++ P W + V+ ++ V G
Sbjct: 150 YID--IHIKKKQKPAFTGRETTDAPQNNWRNKDQSWRQKVDDTAEWSNLTVVFANDKVSG 207
Query: 93 EGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIML---ALATHEV-HFSILREVVFTP 148
EGEHK++ Y+R N +C+YG DADLIML AL T + + +LR+ +P
Sbjct: 208 EGEHKLLDYIRKYGN-----SYYTYCIYGSDADLIMLSMSALTTTAIKNIYVLRDEYKSP 262
Query: 149 GQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWTLREYLDYEF 208
L P + + + DEK
Sbjct: 263 NY----LLINIPNFVKNLIKDVKSNWTDKLDEKR-------------------------- 292
Query: 209 RIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYKKEFRALGGY 268
++DFIFMCF VGNDFLPH+P++EI I ++A Y K Y
Sbjct: 293 -------------FINDFIFMCFMVGNDFLPHIPSIEIMTNGIESMLAFYTKN----KNY 335
Query: 269 LTDGS 273
+TD +
Sbjct: 336 ITDNN 340
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 102/256 (39%), Gaps = 65/256 (25%)
Query: 390 ENSFETDPQENKEEFKAKLKELLRDKSDAFNSDNPEEDKVKLGEPGWKERYYEEKFNAKT 449
E S + N E F+ +LL S ++ ++ V + E ++E+Y ++ F
Sbjct: 362 EQSLCNEKVNNSEYFR---DDLLESSSFLVTNEFGQQKCVNINE--YREKYMKKHF---- 412
Query: 450 PEEREETRKDVVLRYTEGLCWVMHYYYEGVCSWQWFYPYHYAPFASDL------------ 497
E+ + L Y EG+ WV+ YY V W+W Y Y YAP + +
Sbjct: 413 -----ESSSEASLMYLEGMQWVLSYYTLKVPDWEWSYKYDYAPNLTSIIEAMSFKQIGGT 467
Query: 498 --KDLDQFNI-------SFELGHPFKPFNQLLG-VFPSA--------------SSHALPE 533
K+ +Q+ + S E+ F + VF ++ SS A+P
Sbjct: 468 SKKEKNQYKLFPVNSVNSTEVATSSSGFQKSFSMVFQNSLQNTKDWRDKKTKTSSDAIPP 527
Query: 534 HYRKLMTDP---------------NSPISDFYPTDFEVDMNGKRYSWQGIAKLPFIDEAR 578
++ L P + + + P + +D GKR W+GI LP +D+
Sbjct: 528 FHQLLFILPPDSSDLLPYPLCEALTNELKIYAPKELIIDRAGKRQEWEGIVLLPKLDQKV 587
Query: 579 LLDEVKKIEHTLTEEE 594
+ + K + +TE++
Sbjct: 588 VTECYLKYKPYVTEKK 603
>sp|P23252|CR2_HORVU Cold-regulated protein 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1
Length = 202
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 54/75 (72%)
Query: 610 SHPLSASIYTLDEHCKQLKIKERVEVKERLNPELSDGMNGYISPCAGDPHPPVFRSPVAS 669
+HP+S IY+L L K+R E+KE+L+P S GMNGYIS C GDP P VFRSPV
Sbjct: 2 AHPISPYIYSLSSKFGHLADKDRNEIKEQLDPSASGGMNGYISLCGGDPSPLVFRSPVDG 61
Query: 670 MEDIMGNQVLCAIYK 684
+EDIM NQV+C+IYK
Sbjct: 62 LEDIMDNQVICSIYK 76
>sp|Q197A1|EX0N_IIV3 Putative exonuclease 059L OS=Invertebrate iridescent virus 3
GN=IIV3-059L PE=3 SV=1
Length = 560
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/251 (30%), Positives = 114/251 (45%), Gaps = 53/251 (21%)
Query: 26 RQEFEREGRKLPPKSDSQVFDSNVITPGTEFMAVLSIALQYYIHLRLNNDPGWEKIKVI- 84
+Q +R+ R + K+D FDSN I+PGTEF+ L + L+ ++ +L + W + I
Sbjct: 112 KQIQQRQRRFITHKTDGG-FDSNCISPGTEFLFQLGLYLKTHLESKLEKE--WLNVSTIY 168
Query: 85 LSDANVPGEGEHKIMSYVRLQRNLPGYDPNTRHCLYGLDADLIMLALATHEVH-----FS 139
D+ VPGEGEHK+ ++R + D + G DADLIML+L + S
Sbjct: 169 FMDSLVPGEGEHKLFDFLRTHQT-RIVDTKFNIVVVGNDADLIMLSLLVSVLFIKENPLS 227
Query: 140 ILREVVFTPGQQDKCFLCGQPGHLAANCEGKAKRKAGEFDEKGDEVVVPKKPYQFLHIWT 199
ILRE + T + D +L L A R F PY
Sbjct: 228 ILREDL-TSKKLD--YLLVDINLLKDTIYQNASRDKPRF-----------TPY------- 266
Query: 200 LREYLDYEFRIPNPPFEIDLECIVDDFIFMCFFVGNDFLPHMPTLEIREGAINLLMAVYK 259
D+EF ++ DF+ MCF +GNDFLP +P I +G +++L+
Sbjct: 267 -----DFEF-------------VICDFVVMCFMIGNDFLPSVPLFNIYDGGLDMLL---- 304
Query: 260 KEFRALGGYLT 270
K + GY+T
Sbjct: 305 KYYFTTAGYIT 315
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 455 ETRKDVVLRYTEGLCWVMHYY-YEGVC-SWQWFYPYHYAPFASDLKDLDQFNISFELGHP 512
+ K +V Y E + W+ +YY Y VC W +YP +AP A DL ++F
Sbjct: 399 KITKSLVHSYLEEIKWIFNYYAYGAVCIDWNMYYPSQFAPTALDLSFA---TLTFTSQSG 455
Query: 513 FK--------PFNQLLGVFPSASSHALPEHYRKLMTDPNSPISDFYPTDFEVDMNGKRYS 564
K PF QLL + P SS LP+ KL+ + D +P + ++D +GK
Sbjct: 456 LKERKKCLTDPFFQLLCILPPHSSDLLPDPLNKLLV---QKLVDGHPIEIKMDYDGKLNE 512
Query: 565 WQGIAKLPFIDEARLLDEVKKIEHTLTEEEARRNS 599
W+ I LP +D ++L H ++E+ +RN+
Sbjct: 513 WEAIPILPPLDYNKILKMYNDHIHQCSKEDLKRNT 547
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,965,833
Number of Sequences: 539616
Number of extensions: 21769541
Number of successful extensions: 79738
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 678
Number of HSP's that attempted gapping in prelim test: 66593
Number of HSP's gapped (non-prelim): 7577
length of query: 1010
length of database: 191,569,459
effective HSP length: 128
effective length of query: 882
effective length of database: 122,498,611
effective search space: 108043774902
effective search space used: 108043774902
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)