Query 001806
Match_columns 1010
No_of_seqs 288 out of 559
Neff 4.5
Searched_HMMs 13730
Date Tue Mar 26 16:25:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001806.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1103-1106//hhsearch_scop/001806hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ul1x1 a.60.7.1 (X:218-357) F 63.9 1.7 0.00012 18.5 2.0 24 224-247 4-27 (140)
2 d1nc8a_ g.40.1.1 (A:) HIV nucl 57.3 1.9 0.00014 18.0 1.4 20 151-170 6-25 (29)
3 d1rxwa1 a.60.7.1 (A:220-324) F 41.6 6.5 0.00048 14.1 2.2 24 224-247 4-27 (105)
4 d2exfa1 g.40.1.1 (A:12-53) HIV 29.0 10 0.00073 12.8 1.3 16 153-168 3-18 (42)
5 d1b43a1 a.60.7.1 (A:220-339) F 28.2 10 0.00076 12.6 2.2 23 224-246 4-27 (120)
6 d1dsqa_ g.40.1.1 (A:) Nucleic 25.4 11 0.00083 12.3 1.1 18 152-169 3-20 (26)
7 d1ul1x2 c.120.1.2 (X:2-217) Fl 20.4 14 0.001 11.6 5.2 11 486-496 149-159 (216)
8 d1a77a2 c.120.1.2 (A:2-208) Fl 12.9 22 0.0016 10.3 2.4 13 248-260 22-34 (207)
9 d1b43a2 c.120.1.2 (A:1-219) Fl 9.0 33 0.0024 8.9 5.9 12 249-260 23-34 (219)
10 d1rxwa2 c.120.1.2 (A:3-219) Fl 8.3 36 0.0027 8.6 6.8 11 486-496 141-151 (217)
No 1
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.88 E-value=1.7 Score=18.45 Aligned_cols=24 Identities=17% Similarity=0.639 Sum_probs=20.2
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 678876532046777999963225
Q 001806 224 DDFIFMCFFVGNDFLPHMPTLEIR 247 (1010)
Q Consensus 224 DDfVfLcFfvGNDFLPhLPsLeIr 247 (1010)
|.||=||.|+|.||+|.+|.+-+.
T Consensus 4 ~q~id~~~L~GsD~~pgv~gIG~k 27 (140)
T d1ul1x1 4 EQFVDLCILLGSDYCESIRGIGPK 27 (140)
T ss_dssp HHHHHHHHHHHCSSSCCCTTCCHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 999999998287789899982399
No 2
>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=57.35 E-value=1.9 Score=17.99 Aligned_cols=20 Identities=35% Similarity=0.889 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 86443469898764222340
Q 001806 151 QDKCFLCGQPGHLAANCEGK 170 (1010)
Q Consensus 151 ~~~C~lCgQ~GH~~~~C~g~ 170 (1010)
..+|+.||..||.+.+|+..
T Consensus 6 ~ikCfNCGkeGH~ar~CrAP 25 (29)
T d1nc8a_ 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred EEEEECCCCCCHHHHHCCCC
T ss_conf 66765278632305444676
No 3
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=41.61 E-value=6.5 Score=14.12 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=19.9
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 678876532046777999963225
Q 001806 224 DDFIFMCFFVGNDFLPHMPTLEIR 247 (1010)
Q Consensus 224 DDfVfLcFfvGNDFLPhLPsLeIr 247 (1010)
+-||=+|.|+|-||+|.+|.+-..
T Consensus 4 eq~iD~~~L~GsDn~pGV~GIG~k 27 (105)
T d1rxwa1 4 EQLIDIAILVGTDYNEGVKGVGVK 27 (105)
T ss_dssp HHHHHHHHHHCBTTBCCCTTCCHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 999999999588788899993789
No 4
>d2exfa1 g.40.1.1 (A:12-53) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
Probab=29.04 E-value=10 Score=12.75 Aligned_cols=16 Identities=63% Similarity=1.385 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCC
Q ss_conf 4434698987642223
Q 001806 153 KCFLCGQPGHLAANCE 168 (1010)
Q Consensus 153 ~C~lCgQ~GH~~~~C~ 168 (1010)
+|+.|++.||.+.+|.
T Consensus 3 ~C~~Cg~~GH~~~~Cp 18 (42)
T d2exfa1 3 KCFNCGKEGHTARNCR 18 (42)
T ss_dssp CCTTTCCSSSCTTTCS
T ss_pred CCCCCCCCCCCCCCCC
T ss_conf 2545898583705286
No 5
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=28.19 E-value=10 Score=12.62 Aligned_cols=23 Identities=17% Similarity=0.457 Sum_probs=18.8
Q ss_pred HHHHHHHHHCCCCCC-CCCCCCCC
Q ss_conf 678876532046777-99996322
Q 001806 224 DDFIFMCFFVGNDFL-PHMPTLEI 246 (1010)
Q Consensus 224 DDfVfLcFfvGNDFL-PhLPsLeI 246 (1010)
|-||=||.|+|-||- |.+|.+-.
T Consensus 4 eqfIdl~iL~G~DY~~~gI~GIGp 27 (120)
T d1b43a1 4 EKLIELAILVGTDYNPGGIKGIGL 27 (120)
T ss_dssp HHHHHHHHHHCCTTSTTCSTTCCH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 999999999577788656888677
No 6
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=25.44 E-value=11 Score=12.33 Aligned_cols=18 Identities=39% Similarity=1.150 Sum_probs=15.4
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 644346989876422234
Q 001806 152 DKCFLCGQPGHLAANCEG 169 (1010)
Q Consensus 152 ~~C~lCgQ~GH~~~~C~g 169 (1010)
..|+.||+.||...+|.-
T Consensus 3 pvcfscgktghikkdck~ 20 (26)
T d1dsqa_ 3 PVCFSCGKTGHIKRDCKE 20 (26)
T ss_dssp CBCTTTCCBSSCTTTTTC
T ss_pred CEEEECCCCCCCHHHHHH
T ss_conf 877756876651135565
No 7
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.44 E-value=14 Score=11.60 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=5.2
Q ss_pred CCCCCCCCCCC
Q ss_conf 55798853112
Q 001806 486 YPYHYAPFASD 496 (1010)
Q Consensus 486 YPYHYAPFaSD 496 (1010)
.||..||.-+|
T Consensus 149 v~~i~Ap~EAd 159 (216)
T d1ul1x2 149 IPYLDAPSEAE 159 (216)
T ss_dssp CCEEECSSCHH
T ss_pred EEEEECCCHHH
T ss_conf 21673640589
No 8
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=12.85 E-value=22 Score=10.30 Aligned_cols=13 Identities=31% Similarity=0.332 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 4759999999999
Q 001806 248 EGAINLLMAVYKK 260 (1010)
Q Consensus 248 EGaID~Li~~Ykk 260 (1010)
-=|||.-+-+|+-
T Consensus 22 ~vaIDas~~L~~~ 34 (207)
T d1a77a2 22 KVAIDGMNALYQF 34 (207)
T ss_dssp EEEEEHHHHHHHH
T ss_pred EEEEECHHHHHHH
T ss_conf 9999885999999
No 9
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=8.97 E-value=33 Score=8.94 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHH
Q ss_conf 759999999999
Q 001806 249 GAINLLMAVYKK 260 (1010)
Q Consensus 249 GaID~Li~~Ykk 260 (1010)
=|||.-+-+|+-
T Consensus 23 iaIDas~~L~k~ 34 (219)
T d1b43a2 23 IAIDALNAIYQF 34 (219)
T ss_dssp EEEEHHHHHHHH
T ss_pred EEEECHHHHHHH
T ss_conf 999885999999
No 10
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.34 E-value=36 Score=8.63 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q ss_conf 55798853112
Q 001806 486 YPYHYAPFASD 496 (1010)
Q Consensus 486 YPYHYAPFaSD 496 (1010)
+||.-||.-.|
T Consensus 141 i~~i~Ap~EAe 151 (217)
T d1rxwa2 141 IPFVDAPSEGE 151 (217)
T ss_dssp CCEEECSSCHH
T ss_pred CEEEECCCHHH
T ss_conf 50996672389
Done!