Query 001808
Match_columns 1010
No_of_seqs 519 out of 3575
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0735 AAA+-type ATPase [Post 100.0 7E-119 2E-123 1014.4 60.3 822 1-1006 3-838 (952)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 7.9E-78 1.7E-82 672.3 36.2 437 550-1006 186-682 (802)
3 KOG0730 AAA+-type ATPase [Post 100.0 8.6E-69 1.9E-73 610.8 32.4 412 554-1006 184-605 (693)
4 KOG0736 Peroxisome assembly fa 100.0 2.6E-59 5.7E-64 535.7 33.7 393 590-1005 431-845 (953)
5 TIGR01243 CDC48 AAA family ATP 100.0 1.5E-54 3.2E-59 537.7 37.9 434 550-1006 174-625 (733)
6 COG0464 SpoVK ATPases of the A 100.0 2.7E-44 5.8E-49 428.9 33.5 397 580-1006 8-413 (494)
7 KOG0741 AAA+-type ATPase [Post 100.0 6.1E-36 1.3E-40 331.0 27.4 412 548-989 215-650 (744)
8 COG1222 RPT1 ATP-dependent 26S 100.0 1E-35 2.2E-40 319.2 19.1 247 549-824 146-393 (406)
9 COG1222 RPT1 ATP-dependent 26S 100.0 5.4E-36 1.2E-40 321.3 16.4 168 839-1006 146-325 (406)
10 KOG0730 AAA+-type ATPase [Post 100.0 9.5E-32 2.1E-36 308.0 18.5 247 550-826 430-677 (693)
11 CHL00195 ycf46 Ycf46; Provisio 100.0 1.4E-30 3E-35 304.2 27.6 304 655-1006 81-395 (489)
12 KOG0733 Nuclear AAA ATPase (VC 100.0 3.5E-31 7.6E-36 298.1 19.9 259 550-827 507-773 (802)
13 TIGR02639 ClpA ATP-dependent C 100.0 5E-30 1.1E-34 317.7 28.7 380 553-989 181-603 (731)
14 KOG0727 26S proteasome regulat 100.0 1.1E-30 2.3E-35 266.2 14.1 169 839-1007 150-330 (408)
15 PRK11034 clpA ATP-dependent Cl 100.0 1.2E-28 2.6E-33 301.1 28.5 379 553-988 185-606 (758)
16 KOG0734 AAA+-type ATPase conta 100.0 5.5E-30 1.2E-34 284.2 14.9 166 840-1006 300-474 (752)
17 PF09262 PEX-1N: Peroxisome bi 100.0 2.3E-30 5E-35 225.6 6.0 77 94-170 1-80 (80)
18 KOG0734 AAA+-type ATPase conta 100.0 5.4E-29 1.2E-33 276.4 17.7 227 548-795 298-524 (752)
19 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-28 2.4E-33 266.0 18.0 261 550-828 208-474 (491)
20 KOG0728 26S proteasome regulat 100.0 4E-29 8.7E-34 254.5 13.7 167 840-1006 143-321 (404)
21 KOG0739 AAA+-type ATPase [Post 100.0 4.7E-29 1E-33 259.9 13.2 165 840-1005 129-301 (439)
22 KOG0728 26S proteasome regulat 100.0 3.3E-28 7.1E-33 247.9 17.4 246 550-823 143-388 (404)
23 KOG0738 AAA+-type ATPase [Post 100.0 3.8E-29 8.3E-34 269.6 10.3 166 840-1006 208-385 (491)
24 COG0542 clpA ATP-binding subun 100.0 1.6E-27 3.5E-32 284.2 25.3 386 551-989 167-643 (786)
25 KOG0729 26S proteasome regulat 100.0 2.7E-28 5.9E-33 250.3 15.5 167 840-1006 173-351 (435)
26 KOG0736 Peroxisome assembly fa 100.0 1E-27 2.2E-32 276.6 20.3 261 550-827 668-936 (953)
27 KOG0732 AAA+-type ATPase conta 100.0 6E-28 1.3E-32 291.8 18.1 412 550-985 261-694 (1080)
28 KOG0652 26S proteasome regulat 100.0 6.3E-28 1.4E-32 247.0 15.1 245 550-823 167-412 (424)
29 KOG0727 26S proteasome regulat 100.0 1.7E-27 3.7E-32 242.9 17.7 248 548-823 149-396 (408)
30 CHL00195 ycf46 Ycf46; Provisio 100.0 3.7E-27 8E-32 275.5 22.2 244 550-828 224-468 (489)
31 PTZ00454 26S protease regulato 99.9 3.4E-27 7.4E-32 270.5 21.0 249 549-825 140-388 (398)
32 KOG0726 26S proteasome regulat 99.9 1.4E-27 2.9E-32 248.2 13.0 166 840-1005 181-358 (440)
33 TIGR03345 VI_ClpV1 type VI sec 99.9 3.8E-26 8.2E-31 284.6 28.4 385 552-989 185-718 (852)
34 KOG0737 AAA+-type ATPase [Post 99.9 4.1E-27 8.8E-32 255.0 17.0 232 548-799 86-318 (386)
35 KOG0731 AAA+-type ATPase conta 99.9 7.2E-27 1.6E-31 276.4 19.2 249 549-824 306-554 (774)
36 KOG0739 AAA+-type ATPase [Post 99.9 3.9E-27 8.4E-32 245.6 12.8 226 550-796 129-354 (439)
37 CHL00095 clpC Clp protease ATP 99.9 1.6E-25 3.5E-30 280.6 29.7 384 553-989 178-661 (821)
38 KOG0731 AAA+-type ATPase conta 99.9 5.2E-27 1.1E-31 277.5 15.3 166 839-1005 306-484 (774)
39 KOG0726 26S proteasome regulat 99.9 2.2E-27 4.7E-32 246.7 10.4 245 550-823 181-426 (440)
40 PRK03992 proteasome-activating 99.9 2.8E-26 6.1E-31 264.3 20.5 250 550-827 127-376 (389)
41 KOG0652 26S proteasome regulat 99.9 6.2E-27 1.4E-31 239.8 13.0 167 840-1006 167-345 (424)
42 COG1223 Predicted ATPase (AAA+ 99.9 2.6E-26 5.7E-31 235.7 15.6 238 550-823 117-355 (368)
43 PTZ00361 26 proteosome regulat 99.9 1.1E-25 2.4E-30 259.4 20.2 246 550-823 179-424 (438)
44 TIGR03689 pup_AAA proteasome A 99.9 2.9E-26 6.2E-31 267.3 13.8 167 840-1006 178-368 (512)
45 KOG0729 26S proteasome regulat 99.9 4.8E-26 1E-30 233.9 13.3 246 549-824 172-419 (435)
46 TIGR01243 CDC48 AAA family ATP 99.9 4.1E-25 8.9E-30 274.9 22.0 258 551-827 450-714 (733)
47 TIGR03346 chaperone_ClpB ATP-d 99.9 3.2E-24 6.9E-29 269.6 29.5 386 553-989 172-717 (852)
48 COG0464 SpoVK ATPases of the A 99.9 5.6E-25 1.2E-29 262.9 21.5 248 550-826 238-486 (494)
49 PTZ00454 26S protease regulato 99.9 1.9E-25 4.1E-30 256.2 15.9 167 840-1006 141-319 (398)
50 TIGR01241 FtsH_fam ATP-depende 99.9 1E-24 2.2E-29 259.8 19.5 247 550-825 51-297 (495)
51 KOG0735 AAA+-type ATPase [Post 99.9 1.2E-24 2.6E-29 249.0 18.5 228 551-798 664-891 (952)
52 COG1223 Predicted ATPase (AAA+ 99.9 2.2E-25 4.7E-30 229.0 10.9 163 840-1006 117-287 (368)
53 COG0465 HflB ATP-dependent Zn 99.9 4.1E-25 8.9E-30 258.0 13.7 166 839-1005 145-322 (596)
54 PLN00020 ribulose bisphosphate 99.9 9.7E-25 2.1E-29 239.0 14.0 132 873-1006 143-301 (413)
55 CHL00176 ftsH cell division pr 99.9 3.9E-24 8.5E-29 257.5 20.3 244 551-823 180-423 (638)
56 TIGR01242 26Sp45 26S proteasom 99.9 5.9E-24 1.3E-28 244.1 20.4 245 550-822 118-362 (364)
57 PRK10865 protein disaggregatio 99.9 2.3E-23 5.1E-28 260.6 27.1 386 553-989 177-720 (857)
58 COG0465 HflB ATP-dependent Zn 99.9 3.3E-24 7.1E-29 250.4 17.9 247 549-824 145-391 (596)
59 KOG0651 26S proteasome regulat 99.9 1.4E-24 3.1E-29 228.6 13.0 166 840-1005 128-305 (388)
60 PRK03992 proteasome-activating 99.9 1.9E-24 4.2E-29 249.1 14.9 167 840-1006 127-305 (389)
61 TIGR03689 pup_AAA proteasome A 99.9 1.2E-23 2.6E-28 245.5 21.5 195 550-756 178-380 (512)
62 KOG0732 AAA+-type ATPase conta 99.9 1.1E-24 2.4E-29 263.8 12.3 167 840-1006 261-441 (1080)
63 KOG0737 AAA+-type ATPase [Post 99.9 1.3E-24 2.9E-29 235.5 10.2 168 839-1006 87-264 (386)
64 PTZ00361 26 proteosome regulat 99.9 2.6E-24 5.7E-29 248.0 13.1 167 840-1006 179-357 (438)
65 CHL00206 ycf2 Ycf2; Provisiona 99.9 9.3E-24 2E-28 264.6 17.6 214 581-825 1621-1879(2281)
66 KOG0741 AAA+-type ATPase [Post 99.9 3.8E-24 8.2E-29 237.9 10.7 162 845-1006 222-404 (744)
67 KOG0740 AAA+-type ATPase [Post 99.9 3.4E-23 7.4E-28 232.9 16.6 257 551-827 150-408 (428)
68 TIGR01241 FtsH_fam ATP-depende 99.9 1.3E-23 2.9E-28 250.3 14.1 166 840-1006 51-228 (495)
69 PRK10733 hflB ATP-dependent me 99.9 8.5E-22 1.8E-26 240.2 23.9 248 549-825 147-394 (644)
70 KOG0651 26S proteasome regulat 99.9 3.9E-23 8.5E-28 217.8 10.4 244 551-822 129-372 (388)
71 PLN00020 ribulose bisphosphate 99.9 1.3E-21 2.9E-26 214.5 20.4 179 585-776 143-331 (413)
72 TIGR01242 26Sp45 26S proteasom 99.9 4.2E-22 9.1E-27 228.8 14.9 167 840-1006 118-296 (364)
73 KOG0740 AAA+-type ATPase [Post 99.9 2.2E-22 4.8E-27 226.4 11.7 166 840-1006 149-323 (428)
74 CHL00176 ftsH cell division pr 99.9 5.3E-22 1.2E-26 239.1 15.1 166 840-1006 179-356 (638)
75 CHL00206 ycf2 Ycf2; Provisiona 99.8 4.7E-21 1E-25 240.7 14.0 133 867-1005 1619-1806(2281)
76 PRK10733 hflB ATP-dependent me 99.8 1.2E-20 2.7E-25 230.1 14.3 166 840-1006 148-325 (644)
77 PF00004 AAA: ATPase family as 99.8 2.7E-18 5.9E-23 167.5 13.0 121 881-1002 1-132 (132)
78 TIGR02881 spore_V_K stage V sp 99.8 1E-17 2.2E-22 183.7 17.5 222 552-797 4-243 (261)
79 PF09263 PEX-2N: Peroxisome bi 99.8 2E-18 4.3E-23 146.3 7.6 80 3-90 4-87 (87)
80 TIGR02880 cbbX_cfxQ probable R 99.7 5.1E-17 1.1E-21 179.7 18.2 220 555-797 23-258 (284)
81 CHL00181 cbbX CbbX; Provisiona 99.7 4.6E-17 1E-21 180.0 17.7 221 555-798 24-260 (287)
82 KOG1051 Chaperone HSP104 and r 99.7 3E-15 6.5E-20 181.9 26.5 360 591-989 209-710 (898)
83 PF00004 AAA: ATPase family as 99.7 2.8E-16 6.1E-21 153.2 13.8 130 593-739 1-131 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.7 1.6E-16 3.6E-21 175.6 12.1 156 843-1006 22-199 (287)
85 KOG0744 AAA+-type ATPase [Post 99.7 4.8E-17 1E-21 172.8 5.1 167 841-1007 139-331 (423)
86 TIGR02880 cbbX_cfxQ probable R 99.7 5.2E-16 1.1E-20 171.7 13.0 153 845-1005 23-197 (284)
87 KOG0744 AAA+-type ATPase [Post 99.6 1E-15 2.3E-20 162.7 13.1 250 549-822 137-413 (423)
88 KOG0743 AAA+-type ATPase [Post 99.6 3.1E-15 6.7E-20 167.5 17.3 208 551-783 198-411 (457)
89 PF05496 RuvB_N: Holliday junc 99.6 7.8E-15 1.7E-19 152.3 17.5 194 552-787 22-224 (233)
90 KOG0742 AAA+-type ATPase [Post 99.6 2E-14 4.4E-19 156.5 18.4 208 559-793 359-593 (630)
91 TIGR02881 spore_V_K stage V sp 99.6 4.6E-15 9.9E-20 162.8 12.6 154 842-1004 4-179 (261)
92 KOG0743 AAA+-type ATPase [Post 99.6 1.3E-14 2.8E-19 162.5 12.4 159 841-1007 198-374 (457)
93 PRK00080 ruvB Holliday junctio 99.6 1.4E-13 3.1E-18 156.1 20.7 218 552-822 23-249 (328)
94 TIGR00635 ruvB Holliday juncti 99.5 2.6E-13 5.7E-18 152.5 20.1 218 552-822 2-228 (305)
95 COG2255 RuvB Holliday junction 99.5 3.3E-13 7.2E-18 142.3 17.9 198 553-792 25-231 (332)
96 TIGR00763 lon ATP-dependent pr 99.5 4.7E-13 1E-17 167.7 19.7 213 555-797 321-559 (775)
97 PRK14956 DNA polymerase III su 99.5 1.6E-12 3.4E-17 150.5 18.8 194 552-789 16-227 (484)
98 PRK07003 DNA polymerase III su 99.4 2.8E-12 6E-17 153.2 19.6 195 552-790 14-226 (830)
99 COG0466 Lon ATP-dependent Lon 99.4 1.6E-12 3.6E-17 152.0 15.7 190 555-773 324-537 (782)
100 PRK12323 DNA polymerase III su 99.4 4E-12 8.6E-17 150.2 17.6 194 552-789 14-230 (700)
101 PTZ00112 origin recognition co 99.4 7.6E-12 1.6E-16 149.5 19.9 223 554-823 755-1006(1164)
102 KOG0989 Replication factor C, 99.4 5.1E-12 1.1E-16 134.8 16.1 181 551-775 33-222 (346)
103 PRK14960 DNA polymerase III su 99.4 6.8E-12 1.5E-16 148.7 18.6 194 552-789 13-224 (702)
104 TIGR02928 orc1/cdc6 family rep 99.4 1.4E-11 3E-16 142.2 20.9 226 555-823 16-274 (365)
105 PRK00149 dnaA chromosomal repl 99.4 6E-12 1.3E-16 148.9 18.0 274 591-933 149-427 (450)
106 PRK06893 DNA replication initi 99.4 5.5E-12 1.2E-16 135.7 16.1 166 591-789 40-208 (229)
107 PRK14088 dnaA chromosomal repl 99.4 6.3E-12 1.4E-16 147.4 17.8 277 591-934 131-412 (440)
108 KOG0742 AAA+-type ATPase [Post 99.4 5.5E-13 1.2E-17 145.5 7.3 156 843-1006 354-518 (630)
109 PRK14949 DNA polymerase III su 99.4 1.6E-11 3.5E-16 149.5 19.8 194 552-789 14-225 (944)
110 TIGR02902 spore_lonB ATP-depen 99.4 7.9E-12 1.7E-16 149.8 16.9 229 551-821 62-330 (531)
111 COG2256 MGS1 ATPase related to 99.4 1.4E-11 3.1E-16 136.1 17.3 143 591-775 49-204 (436)
112 PRK14962 DNA polymerase III su 99.4 1.8E-11 3.8E-16 144.1 19.2 193 552-788 12-222 (472)
113 PRK00411 cdc6 cell division co 99.4 2.7E-11 5.8E-16 141.3 20.7 226 554-823 30-282 (394)
114 PRK14958 DNA polymerase III su 99.4 1.7E-11 3.7E-16 145.7 18.6 195 552-790 14-226 (509)
115 PRK14086 dnaA chromosomal repl 99.4 1.9E-11 4.1E-16 145.2 18.7 274 592-934 316-594 (617)
116 PRK14964 DNA polymerase III su 99.3 2E-11 4.4E-16 142.9 18.7 195 552-790 11-223 (491)
117 PRK08691 DNA polymerase III su 99.3 2.6E-11 5.5E-16 145.2 19.6 195 552-790 14-226 (709)
118 TIGR00362 DnaA chromosomal rep 99.3 1.2E-11 2.7E-16 144.4 16.5 195 591-822 137-336 (405)
119 PRK06645 DNA polymerase III su 99.3 3.2E-11 7E-16 142.4 19.9 195 552-790 19-235 (507)
120 PRK07994 DNA polymerase III su 99.3 3E-11 6.4E-16 145.5 19.8 194 552-789 14-225 (647)
121 PRK08084 DNA replication initi 99.3 4.4E-11 9.6E-16 129.1 19.3 164 591-789 46-214 (235)
122 PLN03025 replication factor C 99.3 2.7E-11 5.9E-16 137.0 17.8 165 591-786 35-202 (319)
123 TIGR03420 DnaA_homol_Hda DnaA 99.3 2.9E-11 6.4E-16 129.7 16.9 165 590-790 38-207 (226)
124 PRK14961 DNA polymerase III su 99.3 4E-11 8.7E-16 137.8 18.8 190 552-789 14-225 (363)
125 KOG2004 Mitochondrial ATP-depe 99.3 2.9E-11 6.2E-16 140.7 16.7 211 555-794 412-651 (906)
126 TIGR00763 lon ATP-dependent pr 99.3 7.2E-12 1.6E-16 157.0 12.7 146 843-1004 319-493 (775)
127 PRK04195 replication factor C 99.3 3.8E-11 8.2E-16 143.2 18.0 187 552-786 12-201 (482)
128 TIGR02639 ClpA ATP-dependent C 99.3 8.9E-12 1.9E-16 155.4 13.1 146 841-1006 179-348 (731)
129 PRK14963 DNA polymerase III su 99.3 7.6E-11 1.6E-15 139.8 19.6 194 552-789 12-222 (504)
130 PF05496 RuvB_N: Holliday junc 99.3 1.7E-11 3.7E-16 127.6 11.9 107 841-974 21-127 (233)
131 PRK12402 replication factor C 99.3 8.7E-11 1.9E-15 133.9 18.8 189 553-785 14-227 (337)
132 PRK10787 DNA-binding ATP-depen 99.3 4.1E-11 8.8E-16 148.9 17.2 210 556-796 324-559 (784)
133 PRK12422 chromosomal replicati 99.3 4E-11 8.7E-16 140.4 16.1 196 591-823 142-343 (445)
134 PRK13342 recombination factor 99.3 8.7E-11 1.9E-15 137.4 18.3 160 591-789 37-201 (413)
135 PRK14957 DNA polymerase III su 99.3 1.3E-10 2.9E-15 138.0 19.6 194 552-789 14-225 (546)
136 PRK08903 DnaA regulatory inact 99.3 1E-10 2.2E-15 125.8 16.2 160 589-789 41-204 (227)
137 PHA02544 44 clamp loader, smal 99.3 1.5E-10 3.4E-15 130.7 18.5 175 552-775 19-201 (316)
138 PRK05563 DNA polymerase III su 99.3 1.3E-10 2.7E-15 140.1 18.7 194 552-789 14-225 (559)
139 PRK05896 DNA polymerase III su 99.3 1.9E-10 4.1E-15 136.7 19.7 193 552-788 14-224 (605)
140 PRK14951 DNA polymerase III su 99.3 1E-10 2.2E-15 140.7 17.6 195 552-790 14-231 (618)
141 PRK05342 clpX ATP-dependent pr 99.3 2.9E-10 6.3E-15 131.5 20.8 232 556-796 73-382 (412)
142 PF05673 DUF815: Protein of un 99.3 3.4E-10 7.4E-15 119.5 19.4 194 551-786 24-243 (249)
143 PF00308 Bac_DnaA: Bacterial d 99.3 5.3E-11 1.1E-15 127.0 13.5 173 591-789 35-213 (219)
144 PRK07764 DNA polymerase III su 99.2 1.5E-10 3.2E-15 143.9 19.3 194 552-789 13-226 (824)
145 PRK14952 DNA polymerase III su 99.2 1.8E-10 4E-15 138.0 19.4 194 552-789 11-224 (584)
146 PRK11034 clpA ATP-dependent Cl 99.2 2E-10 4.4E-15 141.7 19.8 214 555-797 459-720 (758)
147 PRK07133 DNA polymerase III su 99.2 1.5E-10 3.3E-15 140.0 18.3 194 552-789 16-224 (725)
148 PRK08727 hypothetical protein; 99.2 2.3E-10 4.9E-15 123.4 17.8 162 591-789 42-209 (233)
149 PRK14969 DNA polymerase III su 99.2 1.7E-10 3.6E-15 138.1 18.4 195 552-790 14-226 (527)
150 PRK08451 DNA polymerase III su 99.2 2.6E-10 5.6E-15 134.8 19.1 195 552-790 12-224 (535)
151 TIGR02397 dnaX_nterm DNA polym 99.2 2.2E-10 4.8E-15 131.6 18.2 190 552-789 12-223 (355)
152 PRK05642 DNA replication initi 99.2 2.2E-10 4.7E-15 123.6 16.9 166 591-792 46-216 (234)
153 PRK14965 DNA polymerase III su 99.2 2.4E-10 5.2E-15 138.4 18.8 194 552-789 14-225 (576)
154 PRK14959 DNA polymerase III su 99.2 3.2E-10 7E-15 135.4 19.3 192 552-788 14-224 (624)
155 PRK05342 clpX ATP-dependent pr 99.2 5.1E-11 1.1E-15 137.8 11.9 145 845-989 72-239 (412)
156 COG1474 CDC6 Cdc6-related prot 99.2 5.3E-10 1.2E-14 127.5 20.1 220 556-822 19-264 (366)
157 PRK14970 DNA polymerase III su 99.2 3.4E-10 7.4E-15 130.7 18.8 192 552-789 15-214 (367)
158 PRK13341 recombination factor 99.2 2.2E-10 4.7E-15 140.8 18.0 161 591-790 53-223 (725)
159 PRK09111 DNA polymerase III su 99.2 4.2E-10 9.1E-15 135.7 19.6 194 552-789 22-238 (598)
160 TIGR00382 clpX endopeptidase C 99.2 8.6E-11 1.9E-15 135.1 12.1 146 844-989 77-247 (413)
161 PRK06647 DNA polymerase III su 99.2 4.4E-10 9.5E-15 135.0 18.6 194 552-789 14-225 (563)
162 PF07724 AAA_2: AAA domain (Cd 99.2 3.4E-11 7.3E-16 123.2 7.4 112 876-989 1-129 (171)
163 PRK14087 dnaA chromosomal repl 99.2 2.9E-10 6.4E-15 133.6 16.4 196 591-822 142-347 (450)
164 KOG2004 Mitochondrial ATP-depe 99.2 1.1E-10 2.4E-15 135.9 12.3 149 842-1005 409-583 (906)
165 PRK06305 DNA polymerase III su 99.2 9.3E-10 2E-14 129.4 19.8 193 552-788 15-226 (451)
166 PRK14953 DNA polymerase III su 99.2 3.1E-10 6.7E-15 134.3 15.8 194 552-789 14-225 (486)
167 PRK00440 rfc replication facto 99.2 6.5E-10 1.4E-14 125.7 17.7 212 552-825 15-228 (319)
168 COG2256 MGS1 ATPase related to 99.2 1E-10 2.2E-15 129.4 10.6 114 841-989 21-141 (436)
169 CHL00095 clpC Clp protease ATP 99.2 1.3E-10 2.8E-15 146.8 12.7 144 841-1005 176-343 (821)
170 PRK07940 DNA polymerase III su 99.2 8.4E-10 1.8E-14 127.1 18.3 194 552-783 3-213 (394)
171 COG0466 Lon ATP-dependent Lon 99.1 1.8E-10 3.9E-15 135.2 12.1 149 843-1006 322-496 (782)
172 TIGR00390 hslU ATP-dependent p 99.1 8.2E-10 1.8E-14 125.2 16.9 136 655-795 247-407 (441)
173 PRK10865 protein disaggregatio 99.1 2E-10 4.3E-15 144.9 13.1 145 841-1006 175-344 (857)
174 PRK06620 hypothetical protein; 99.1 6.1E-10 1.3E-14 118.3 14.8 145 591-788 45-193 (214)
175 TIGR00390 hslU ATP-dependent p 99.1 1.9E-10 4.1E-15 130.3 11.4 89 845-933 13-104 (441)
176 TIGR00382 clpX endopeptidase C 99.1 7.5E-10 1.6E-14 127.4 16.4 198 590-796 116-388 (413)
177 PRK05201 hslU ATP-dependent pr 99.1 1.8E-10 3.8E-15 130.6 10.4 88 845-933 16-107 (443)
178 COG0593 DnaA ATPase involved i 99.1 8.7E-10 1.9E-14 125.4 15.9 195 591-823 114-313 (408)
179 PRK05201 hslU ATP-dependent pr 99.1 8.9E-10 1.9E-14 124.9 15.8 134 655-793 249-407 (443)
180 COG2812 DnaX DNA polymerase II 99.1 5.3E-10 1.1E-14 130.6 13.3 197 553-791 15-227 (515)
181 PRK14948 DNA polymerase III su 99.1 2.1E-09 4.6E-14 130.5 19.0 191 553-787 15-225 (620)
182 TIGR02903 spore_lon_C ATP-depe 99.1 1.6E-09 3.6E-14 132.0 18.2 236 552-822 152-429 (615)
183 PRK14955 DNA polymerase III su 99.1 2.1E-09 4.5E-14 125.1 18.2 194 552-789 14-233 (397)
184 TIGR03345 VI_ClpV1 type VI sec 99.1 5E-10 1.1E-14 140.8 13.3 145 841-1006 184-353 (852)
185 PRK14954 DNA polymerase III su 99.1 3.3E-09 7.2E-14 128.1 19.5 194 552-789 14-233 (620)
186 PRK09087 hypothetical protein; 99.1 8E-10 1.7E-14 118.4 12.6 172 591-822 45-221 (226)
187 PRK14950 DNA polymerase III su 99.1 3.6E-09 7.8E-14 128.8 19.5 193 552-788 14-225 (585)
188 TIGR02640 gas_vesic_GvpN gas v 99.0 2.8E-09 6.1E-14 117.1 14.4 156 561-754 5-198 (262)
189 TIGR03346 chaperone_ClpB ATP-d 99.0 8.4E-09 1.8E-13 130.8 20.6 218 554-797 565-830 (852)
190 PRK14971 DNA polymerase III su 99.0 7.6E-09 1.6E-13 125.8 19.2 193 552-788 15-226 (614)
191 COG1224 TIP49 DNA helicase TIP 99.0 7.7E-09 1.7E-13 112.5 16.9 132 655-825 291-434 (450)
192 COG0542 clpA ATP-binding subun 99.0 4.2E-09 9.1E-14 127.5 16.4 218 554-797 491-759 (786)
193 PRK00080 ruvB Holliday junctio 99.0 1.5E-09 3.2E-14 123.4 11.8 139 841-1006 22-183 (328)
194 PRK14956 DNA polymerase III su 99.0 1.5E-09 3.3E-14 125.9 11.7 118 841-989 15-160 (484)
195 COG2255 RuvB Holliday junction 99.0 1.9E-09 4.2E-14 114.2 11.1 109 840-975 22-130 (332)
196 TIGR00635 ruvB Holliday juncti 99.0 1.9E-09 4E-14 121.3 11.6 138 842-1006 2-162 (305)
197 TIGR03015 pepcterm_ATPase puta 99.0 2.9E-08 6.4E-13 109.4 20.8 195 591-822 44-265 (269)
198 PRK10787 DNA-binding ATP-depen 99.0 3E-09 6.5E-14 132.4 13.8 138 844-996 322-487 (784)
199 COG2607 Predicted ATPase (AAA+ 99.0 3.5E-08 7.6E-13 102.4 18.6 194 551-786 57-275 (287)
200 PRK12323 DNA polymerase III su 99.0 1.7E-09 3.6E-14 128.4 10.3 118 841-989 13-164 (700)
201 PRK07940 DNA polymerase III su 99.0 3.1E-09 6.6E-14 122.5 12.0 145 841-1006 2-179 (394)
202 PF05673 DUF815: Protein of un 99.0 3.5E-09 7.7E-14 111.9 11.3 141 840-1008 23-199 (249)
203 TIGR01650 PD_CobS cobaltochela 98.9 4.3E-09 9.3E-14 116.8 12.2 141 590-754 64-233 (327)
204 cd00009 AAA The AAA+ (ATPases 98.9 9.2E-09 2E-13 101.0 13.4 114 877-1001 18-150 (151)
205 cd00009 AAA The AAA+ (ATPases 98.9 9.1E-09 2E-13 101.1 13.2 127 590-739 19-150 (151)
206 TIGR02974 phageshock_pspF psp 98.9 1E-08 2.2E-13 116.1 15.1 203 557-792 2-233 (329)
207 PRK07003 DNA polymerase III su 98.9 4.3E-09 9.4E-14 126.3 12.1 118 841-989 13-158 (830)
208 TIGR00678 holB DNA polymerase 98.9 1.2E-08 2.6E-13 106.4 14.0 153 590-776 14-184 (188)
209 KOG2028 ATPase related to the 98.9 2.3E-08 5E-13 108.6 16.2 185 591-822 163-367 (554)
210 PRK14960 DNA polymerase III su 98.9 5.1E-09 1.1E-13 124.6 11.7 118 841-989 12-158 (702)
211 KOG0991 Replication factor C, 98.9 1.3E-08 2.8E-13 104.7 12.8 157 591-777 49-208 (333)
212 PRK13342 recombination factor 98.9 1.1E-08 2.4E-13 119.9 13.5 129 841-1005 9-153 (413)
213 PRK14962 DNA polymerase III su 98.9 9.6E-09 2.1E-13 121.1 12.8 134 841-1005 11-178 (472)
214 KOG1969 DNA replication checkp 98.9 4E-08 8.6E-13 115.5 17.0 172 587-787 323-510 (877)
215 PRK11608 pspF phage shock prot 98.9 2.5E-08 5.3E-13 113.0 15.2 200 553-791 5-239 (326)
216 TIGR02640 gas_vesic_GvpN gas v 98.9 9.3E-09 2E-13 113.0 11.3 115 878-1006 21-188 (262)
217 smart00382 AAA ATPases associa 98.9 1.7E-08 3.6E-13 98.2 11.5 118 878-1003 2-147 (148)
218 PRK14949 DNA polymerase III su 98.9 1.1E-08 2.3E-13 125.3 11.9 118 841-989 13-159 (944)
219 COG1221 PspF Transcriptional r 98.8 2.8E-08 6E-13 112.9 13.1 212 551-793 75-310 (403)
220 PRK04132 replication factor C 98.8 3.9E-08 8.4E-13 121.7 15.1 166 591-787 565-734 (846)
221 KOG2028 ATPase related to the 98.8 1.1E-08 2.4E-13 111.1 8.9 88 880-989 164-259 (554)
222 TIGR01817 nifA Nif-specific re 98.8 4.5E-08 9.7E-13 118.6 15.3 202 551-791 193-427 (534)
223 PRK14958 DNA polymerase III su 98.8 1.7E-08 3.6E-13 120.3 11.3 118 841-989 13-159 (509)
224 PRK14961 DNA polymerase III su 98.8 2.6E-08 5.6E-13 114.7 12.3 133 841-1005 13-180 (363)
225 PF01078 Mg_chelatase: Magnesi 98.8 7.4E-09 1.6E-13 107.4 6.9 118 843-989 2-158 (206)
226 PRK13531 regulatory ATPase Rav 98.8 5E-08 1.1E-12 113.1 14.4 141 589-752 38-192 (498)
227 COG1219 ClpX ATP-dependent pro 98.8 9.3E-08 2E-12 102.8 15.0 198 591-795 98-370 (408)
228 PHA02544 44 clamp loader, smal 98.8 3.5E-08 7.6E-13 111.6 12.7 137 841-1005 18-162 (316)
229 PHA02244 ATPase-like protein 98.8 7.7E-08 1.7E-12 107.9 15.1 99 878-989 119-230 (383)
230 COG3604 FhlA Transcriptional r 98.8 3.9E-08 8.4E-13 111.8 12.6 211 550-792 219-456 (550)
231 PRK04195 replication factor C 98.8 4E-08 8.8E-13 117.3 13.6 140 841-1006 11-163 (482)
232 PRK13407 bchI magnesium chelat 98.8 5E-08 1.1E-12 109.9 13.5 81 656-753 129-215 (334)
233 PRK07994 DNA polymerase III su 98.8 2.5E-08 5.5E-13 120.5 11.7 118 841-989 13-159 (647)
234 PRK09112 DNA polymerase III su 98.8 2.1E-07 4.6E-12 106.0 18.3 189 552-785 21-241 (351)
235 TIGR02030 BchI-ChlI magnesium 98.8 6.9E-08 1.5E-12 109.0 14.2 81 656-753 132-218 (337)
236 PRK08691 DNA polymerase III su 98.8 2E-08 4.4E-13 120.7 10.3 118 841-989 13-158 (709)
237 COG5271 MDN1 AAA ATPase contai 98.8 1.2E-07 2.7E-12 117.1 16.7 139 590-755 1543-1704(4600)
238 PF12775 AAA_7: P-loop contain 98.8 5.5E-09 1.2E-13 114.9 4.9 153 590-756 33-195 (272)
239 PRK14964 DNA polymerase III su 98.8 3.5E-08 7.7E-13 115.9 11.7 118 841-989 10-156 (491)
240 COG0714 MoxR-like ATPases [Gen 98.8 2.2E-08 4.8E-13 113.8 9.6 115 877-1006 42-192 (329)
241 COG5271 MDN1 AAA ATPase contai 98.7 6.2E-08 1.3E-12 119.6 13.3 135 590-753 888-1046(4600)
242 CHL00081 chlI Mg-protoporyphyr 98.7 1.2E-07 2.6E-12 107.1 15.0 81 656-753 145-231 (350)
243 KOG0745 Putative ATP-dependent 98.7 1.6E-07 3.4E-12 104.6 15.2 196 591-795 227-511 (564)
244 PRK06645 DNA polymerase III su 98.7 4.9E-08 1.1E-12 115.6 12.0 119 840-989 17-168 (507)
245 PRK15429 formate hydrogenlyase 98.7 1.6E-07 3.4E-12 117.2 16.9 205 551-792 373-609 (686)
246 PF07728 AAA_5: AAA domain (dy 98.7 3E-08 6.5E-13 98.0 8.4 117 592-732 1-139 (139)
247 PRK14952 DNA polymerase III su 98.7 6.2E-08 1.4E-12 116.5 12.7 118 841-989 10-158 (584)
248 KOG0989 Replication factor C, 98.7 3.8E-08 8.3E-13 105.6 9.5 124 841-989 33-169 (346)
249 PF00158 Sigma54_activat: Sigm 98.7 1.5E-08 3.2E-13 103.5 5.9 115 878-1006 22-166 (168)
250 smart00382 AAA ATPases associa 98.7 1.2E-07 2.6E-12 92.2 12.1 76 590-668 2-91 (148)
251 PRK10820 DNA-binding transcrip 98.7 2.1E-07 4.5E-12 112.1 16.6 207 551-791 201-436 (520)
252 COG3829 RocR Transcriptional r 98.7 9.2E-08 2E-12 110.3 12.7 209 550-790 241-477 (560)
253 PRK07471 DNA polymerase III su 98.7 4.1E-07 9E-12 104.2 18.0 183 552-780 17-234 (365)
254 PF06068 TIP49: TIP49 C-termin 98.7 8.9E-08 1.9E-12 106.3 11.9 95 655-777 278-384 (398)
255 PRK11388 DNA-binding transcrip 98.7 2.2E-07 4.7E-12 115.1 16.8 201 552-791 323-553 (638)
256 TIGR01650 PD_CobS cobaltochela 98.7 1.8E-08 4E-13 111.8 6.5 118 877-1006 63-223 (327)
257 PRK05563 DNA polymerase III su 98.7 1.2E-07 2.6E-12 114.6 13.7 118 841-989 13-159 (559)
258 KOG2035 Replication factor C, 98.7 3.2E-07 6.9E-12 97.0 15.0 159 591-776 35-221 (351)
259 PRK14963 DNA polymerase III su 98.7 1.1E-07 2.3E-12 113.2 13.0 119 840-989 10-155 (504)
260 PF07724 AAA_2: AAA domain (Cd 98.7 5.1E-08 1.1E-12 99.9 8.9 121 591-720 4-131 (171)
261 PLN03025 replication factor C 98.7 7.7E-08 1.7E-12 108.9 11.2 103 841-973 10-124 (319)
262 PRK14951 DNA polymerase III su 98.7 5.8E-08 1.3E-12 117.2 10.7 118 841-989 13-164 (618)
263 PRK05022 anaerobic nitric oxid 98.7 4.4E-07 9.5E-12 109.2 18.3 205 553-793 186-421 (509)
264 PRK07764 DNA polymerase III su 98.7 7.3E-08 1.6E-12 120.1 11.9 118 841-989 12-159 (824)
265 COG2204 AtoC Response regulato 98.7 1.2E-07 2.5E-12 109.7 12.7 208 552-792 139-374 (464)
266 PRK05564 DNA polymerase III su 98.7 4.5E-07 9.8E-12 102.4 17.1 179 553-776 3-183 (313)
267 PRK14957 DNA polymerase III su 98.7 1.1E-07 2.3E-12 113.5 12.4 118 841-989 13-159 (546)
268 TIGR02329 propionate_PrpR prop 98.7 1.3E-07 2.8E-12 113.0 12.9 205 551-791 209-449 (526)
269 PRK14959 DNA polymerase III su 98.7 1.2E-07 2.6E-12 113.6 12.5 118 841-989 13-159 (624)
270 COG2607 Predicted ATPase (AAA+ 98.7 2.1E-07 4.6E-12 96.7 12.3 123 839-989 55-183 (287)
271 PF05621 TniB: Bacterial TniB 98.6 1.5E-06 3.3E-11 95.0 19.2 205 562-795 41-272 (302)
272 COG3829 RocR Transcriptional r 98.6 4E-08 8.7E-13 113.3 7.3 141 841-1006 242-413 (560)
273 PRK14969 DNA polymerase III su 98.6 1.2E-07 2.7E-12 113.6 11.9 118 841-989 13-159 (527)
274 PRK15424 propionate catabolism 98.6 2.7E-07 5.8E-12 110.2 14.5 206 552-790 217-463 (538)
275 COG1219 ClpX ATP-dependent pro 98.6 9.1E-08 2E-12 102.8 9.3 98 878-975 97-203 (408)
276 PRK12402 replication factor C 98.6 3E-07 6.6E-12 104.8 14.3 139 841-1005 12-186 (337)
277 PRK14965 DNA polymerase III su 98.6 1.2E-07 2.6E-12 115.1 11.6 118 841-989 13-159 (576)
278 PHA02244 ATPase-like protein 98.6 5.6E-07 1.2E-11 101.1 15.9 128 591-745 120-265 (383)
279 PF00158 Sigma54_activat: Sigm 98.6 3.8E-07 8.2E-12 93.2 13.4 129 556-718 1-143 (168)
280 PRK05896 DNA polymerase III su 98.6 1.7E-07 3.7E-12 111.9 12.2 118 841-989 13-158 (605)
281 PRK11331 5-methylcytosine-spec 98.6 2.9E-07 6.3E-12 106.0 13.5 133 590-740 194-357 (459)
282 PRK06305 DNA polymerase III su 98.6 2E-07 4.4E-12 109.9 12.1 118 841-989 14-160 (451)
283 COG0714 MoxR-like ATPases [Gen 98.6 5.3E-08 1.1E-12 110.7 7.0 137 590-752 43-201 (329)
284 PRK14948 DNA polymerase III su 98.6 1.8E-07 4E-12 113.8 12.1 118 841-989 13-161 (620)
285 COG3604 FhlA Transcriptional r 98.6 5.6E-08 1.2E-12 110.6 6.8 143 841-1009 220-393 (550)
286 PF07728 AAA_5: AAA domain (dy 98.6 1.5E-08 3.4E-13 100.1 2.1 98 880-990 1-124 (139)
287 KOG0745 Putative ATP-dependent 98.6 2.1E-07 4.5E-12 103.6 10.9 97 878-974 226-331 (564)
288 PRK07133 DNA polymerase III su 98.6 2.2E-07 4.7E-12 113.1 11.9 124 840-989 14-158 (725)
289 PRK14955 DNA polymerase III su 98.6 2.5E-07 5.4E-12 107.8 12.1 118 841-989 13-167 (397)
290 PRK05707 DNA polymerase III su 98.6 9E-07 2E-11 100.0 16.2 156 590-776 22-196 (328)
291 TIGR02031 BchD-ChlD magnesium 98.6 4.3E-07 9.4E-12 110.4 14.5 141 591-754 17-174 (589)
292 PRK13341 recombination factor 98.6 2.6E-07 5.5E-12 114.0 12.6 114 841-989 25-146 (725)
293 TIGR02442 Cob-chelat-sub cobal 98.6 5.1E-07 1.1E-11 111.1 15.1 146 591-753 26-213 (633)
294 TIGR02397 dnaX_nterm DNA polym 98.6 3.3E-07 7.2E-12 105.3 12.4 118 841-989 11-156 (355)
295 PRK13531 regulatory ATPase Rav 98.6 2.1E-07 4.6E-12 108.0 10.5 116 877-1004 38-181 (498)
296 PF07726 AAA_3: ATPase family 98.6 2.3E-08 5E-13 95.5 2.1 92 880-989 1-112 (131)
297 COG1123 ATPase components of v 98.6 3.4E-06 7.4E-11 99.0 20.0 32 586-617 31-62 (539)
298 TIGR00362 DnaA chromosomal rep 98.6 1.8E-07 3.8E-12 109.6 9.5 118 878-1006 136-271 (405)
299 PRK13407 bchI magnesium chelat 98.5 1.1E-07 2.3E-12 107.3 7.0 138 841-1005 5-204 (334)
300 PRK14970 DNA polymerase III su 98.5 4.3E-07 9.3E-12 105.0 12.2 119 841-989 14-148 (367)
301 PRK11331 5-methylcytosine-spec 98.5 2.7E-07 5.9E-12 106.2 10.2 102 878-989 194-334 (459)
302 smart00350 MCM minichromosome 98.5 4E-07 8.6E-12 109.4 12.1 142 590-755 236-401 (509)
303 TIGR02903 spore_lon_C ATP-depe 98.5 8.3E-07 1.8E-11 108.5 15.0 61 841-914 151-221 (615)
304 PRK07399 DNA polymerase III su 98.5 2.4E-06 5.2E-11 96.1 17.3 187 553-785 3-222 (314)
305 TIGR00602 rad24 checkpoint pro 98.5 1.6E-06 3.4E-11 105.2 16.6 198 552-786 82-322 (637)
306 KOG1514 Origin recognition com 98.5 2.3E-06 4.9E-11 101.0 17.2 233 555-826 397-658 (767)
307 KOG3595 Dyneins, heavy chain [ 98.5 1.9E-06 4.2E-11 114.2 18.6 329 591-945 128-531 (1395)
308 PRK06647 DNA polymerase III su 98.5 5.6E-07 1.2E-11 108.5 12.4 119 840-989 12-158 (563)
309 KOG1942 DNA helicase, TBP-inte 98.5 2.5E-06 5.5E-11 90.6 15.4 96 655-778 296-404 (456)
310 COG0470 HolB ATPase involved i 98.5 9.4E-07 2E-11 100.1 13.3 130 592-750 26-177 (325)
311 TIGR02655 circ_KaiC circadian 98.5 7.9E-07 1.7E-11 106.2 13.1 78 873-950 258-366 (484)
312 PRK00149 dnaA chromosomal repl 98.5 2.9E-07 6.4E-12 109.1 9.0 118 879-1006 149-283 (450)
313 PRK14954 DNA polymerase III su 98.5 7.7E-07 1.7E-11 107.9 12.6 123 841-989 13-167 (620)
314 COG1220 HslU ATP-dependent pro 98.5 2E-06 4.4E-11 93.3 14.1 114 655-773 250-381 (444)
315 COG5245 DYN1 Dynein, heavy cha 98.5 2.7E-07 5.9E-12 113.8 8.0 335 586-946 1490-1903(3164)
316 PRK09111 DNA polymerase III su 98.5 6.7E-07 1.5E-11 108.2 11.5 124 841-989 21-172 (598)
317 PRK14953 DNA polymerase III su 98.5 8.5E-07 1.8E-11 105.3 12.1 119 841-989 13-159 (486)
318 KOG0990 Replication factor C, 98.4 5.7E-07 1.2E-11 97.2 9.1 154 592-775 64-224 (360)
319 PRK07993 DNA polymerase III su 98.4 6E-06 1.3E-10 93.6 17.6 174 557-776 5-197 (334)
320 PF07726 AAA_3: ATPase family 98.4 5E-08 1.1E-12 93.2 0.7 113 592-732 1-129 (131)
321 KOG1969 DNA replication checkp 98.4 1E-06 2.3E-11 103.8 11.5 114 877-1007 325-472 (877)
322 PRK14950 DNA polymerase III su 98.4 8.9E-07 1.9E-11 108.0 11.6 119 841-989 13-160 (585)
323 PRK14088 dnaA chromosomal repl 98.4 5E-07 1.1E-11 106.4 9.1 72 879-951 131-208 (440)
324 KOG2680 DNA helicase TIP49, TB 98.4 3.4E-06 7.4E-11 90.0 14.1 133 655-825 288-431 (454)
325 PRK06871 DNA polymerase III su 98.4 7.5E-06 1.6E-10 92.0 17.7 156 557-753 5-178 (325)
326 COG2812 DnaX DNA polymerase II 98.4 2.6E-07 5.5E-12 108.4 6.1 130 841-996 13-175 (515)
327 PRK08058 DNA polymerase III su 98.4 2.2E-06 4.8E-11 97.3 13.5 135 590-752 28-180 (329)
328 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.1E-06 2.3E-11 94.4 10.2 81 847-950 20-103 (226)
329 TIGR02915 PEP_resp_reg putativ 98.4 1.7E-06 3.8E-11 102.6 13.0 200 555-791 140-371 (445)
330 TIGR02928 orc1/cdc6 family rep 98.4 1.7E-06 3.6E-11 100.0 12.5 145 844-1005 15-201 (365)
331 PF13177 DNA_pol3_delta2: DNA 98.4 2.4E-06 5.2E-11 86.9 12.0 124 590-740 19-160 (162)
332 KOG2227 Pre-initiation complex 98.4 4.7E-06 1E-10 94.4 14.9 204 555-792 151-379 (529)
333 PRK08181 transposase; Validate 98.4 4.8E-07 1E-11 99.2 6.4 99 878-989 106-208 (269)
334 PRK10923 glnG nitrogen regulat 98.4 5.7E-06 1.2E-10 98.9 15.9 200 554-792 138-371 (469)
335 PRK08903 DnaA regulatory inact 98.4 2.3E-06 5E-11 92.0 11.3 104 877-1005 41-159 (227)
336 PRK09302 circadian clock prote 98.4 3.4E-06 7.3E-11 101.8 14.0 78 873-950 268-376 (509)
337 PRK08451 DNA polymerase III su 98.4 2.2E-06 4.8E-11 101.8 12.0 119 841-989 11-157 (535)
338 PRK09183 transposase/IS protei 98.4 6.5E-07 1.4E-11 98.1 7.0 106 877-994 101-210 (259)
339 PF01637 Arch_ATPase: Archaeal 98.4 2.6E-06 5.6E-11 91.1 11.6 164 590-777 20-228 (234)
340 TIGR02442 Cob-chelat-sub cobal 98.3 8.2E-07 1.8E-11 109.2 8.6 135 843-1004 3-201 (633)
341 PRK08769 DNA polymerase III su 98.3 1.3E-05 2.7E-10 90.1 17.2 155 590-777 26-202 (319)
342 TIGR02902 spore_lonB ATP-depen 98.3 1.2E-06 2.6E-11 105.5 9.7 106 841-973 62-200 (531)
343 PRK00411 cdc6 cell division co 98.3 2.3E-06 4.9E-11 100.0 11.7 104 878-989 55-182 (394)
344 CHL00081 chlI Mg-protoporyphyr 98.3 7.9E-07 1.7E-11 100.5 7.4 138 841-1005 14-220 (350)
345 PRK06893 DNA replication initi 98.3 1.4E-06 3.1E-11 93.8 9.1 63 880-952 41-106 (229)
346 PRK06526 transposase; Provisio 98.3 4.8E-07 1E-11 98.6 5.2 102 878-992 98-203 (254)
347 smart00763 AAA_PrkA PrkA AAA d 98.3 1.4E-05 3E-10 90.1 16.8 53 555-616 52-104 (361)
348 PF13173 AAA_14: AAA domain 98.3 2.3E-06 5.1E-11 83.4 9.4 120 591-745 3-126 (128)
349 PRK15424 propionate catabolism 98.3 6.6E-07 1.4E-11 106.9 6.4 136 842-1002 217-391 (538)
350 PTZ00112 origin recognition co 98.3 3.7E-06 8.1E-11 101.9 12.5 106 881-996 784-920 (1164)
351 PRK14971 DNA polymerase III su 98.3 3.3E-06 7.2E-11 103.0 12.4 119 841-989 14-161 (614)
352 TIGR02974 phageshock_pspF psp 98.3 8E-07 1.7E-11 100.8 6.6 112 878-1003 22-163 (329)
353 PRK12422 chromosomal replicati 98.3 1.5E-06 3.3E-11 102.1 9.1 73 878-951 141-216 (445)
354 PRK06964 DNA polymerase III su 98.3 4.6E-06 9.9E-11 94.4 12.5 136 590-752 21-202 (342)
355 TIGR00368 Mg chelatase-related 98.3 1.5E-06 3.3E-11 103.2 8.9 119 842-989 190-347 (499)
356 TIGR02030 BchI-ChlI magnesium 98.3 1.5E-06 3.3E-11 98.2 8.3 136 843-1005 3-207 (337)
357 COG2204 AtoC Response regulato 98.3 1E-06 2.2E-11 102.1 6.7 139 842-1006 139-308 (464)
358 TIGR02329 propionate_PrpR prop 98.3 1E-06 2.2E-11 105.4 6.8 139 841-1004 209-378 (526)
359 PRK05022 anaerobic nitric oxid 98.3 1.3E-06 2.7E-11 105.3 7.6 138 844-1006 187-354 (509)
360 PF14532 Sigma54_activ_2: Sigm 98.3 1.5E-06 3.3E-11 85.9 6.7 81 558-668 2-82 (138)
361 PRK00440 rfc replication facto 98.3 5.5E-06 1.2E-10 93.7 12.1 117 841-988 14-141 (319)
362 PRK07952 DNA replication prote 98.3 3.3E-06 7.1E-11 91.3 9.6 99 879-989 100-204 (244)
363 COG1239 ChlI Mg-chelatase subu 98.3 5.8E-06 1.2E-10 93.4 11.8 84 656-756 145-234 (423)
364 PF05729 NACHT: NACHT domain 98.2 6.9E-06 1.5E-10 83.0 11.4 145 592-755 2-164 (166)
365 PRK14086 dnaA chromosomal repl 98.2 1.7E-06 3.8E-11 103.4 8.0 73 879-952 315-392 (617)
366 PRK11388 DNA-binding transcrip 98.2 1E-06 2.2E-11 109.2 6.3 140 842-1006 323-489 (638)
367 TIGR01817 nifA Nif-specific re 98.2 2.4E-06 5.1E-11 103.7 9.3 139 842-1005 194-362 (534)
368 PRK05564 DNA polymerase III su 98.2 6.1E-06 1.3E-10 93.3 11.9 119 842-989 2-132 (313)
369 COG0470 HolB ATPase involved i 98.2 6.5E-06 1.4E-10 93.2 12.2 95 880-989 26-148 (325)
370 TIGR00678 holB DNA polymerase 98.2 7.5E-06 1.6E-10 85.4 11.6 111 877-1005 13-157 (188)
371 PRK08699 DNA polymerase III su 98.2 8.5E-06 1.8E-10 92.1 12.7 136 590-752 21-183 (325)
372 KOG1051 Chaperone HSP104 and r 98.2 2.8E-05 6E-10 96.2 18.0 138 554-718 562-710 (898)
373 PRK07471 DNA polymerase III su 98.2 7.1E-06 1.5E-10 94.1 12.2 125 840-989 15-180 (365)
374 PRK15429 formate hydrogenlyase 98.2 3.3E-06 7.1E-11 105.5 10.1 135 842-1002 374-539 (686)
375 PRK11361 acetoacetate metaboli 98.2 1.7E-05 3.6E-10 94.5 15.7 197 555-791 144-375 (457)
376 TIGR01818 ntrC nitrogen regula 98.2 9.7E-06 2.1E-10 96.8 13.7 199 555-792 135-367 (463)
377 PRK12377 putative replication 98.2 4.2E-06 9.1E-11 90.7 9.5 100 878-989 101-205 (248)
378 PF01078 Mg_chelatase: Magnesi 98.2 1.2E-06 2.6E-11 91.1 5.0 25 591-615 23-47 (206)
379 PRK09112 DNA polymerase III su 98.2 8.8E-06 1.9E-10 92.8 12.4 141 840-1005 19-202 (351)
380 COG1484 DnaC DNA replication p 98.2 2.6E-06 5.6E-11 92.9 7.7 110 877-998 104-217 (254)
381 PF03152 UFD1: Ubiquitin fusio 98.2 1.7E-05 3.8E-10 80.5 13.0 150 13-170 25-175 (176)
382 PF13173 AAA_14: AAA domain 98.2 7.5E-06 1.6E-10 79.8 10.0 69 879-949 3-73 (128)
383 PF14532 Sigma54_activ_2: Sigm 98.2 8.5E-07 1.8E-11 87.7 3.2 104 878-1007 21-133 (138)
384 TIGR00764 lon_rel lon-related 98.2 1.8E-05 3.8E-10 96.7 15.0 101 709-822 268-390 (608)
385 PF01695 IstB_IS21: IstB-like 98.2 1.6E-06 3.4E-11 89.5 5.0 100 877-989 46-149 (178)
386 PRK11608 pspF phage shock prot 98.2 2.8E-06 6.1E-11 96.4 7.5 134 844-1002 6-169 (326)
387 PRK06090 DNA polymerase III su 98.2 3E-05 6.6E-10 87.0 15.5 155 557-752 6-178 (319)
388 KOG0991 Replication factor C, 98.2 3.1E-06 6.6E-11 87.5 6.6 94 841-950 24-126 (333)
389 PRK15115 response regulator Gl 98.2 2.2E-05 4.7E-10 93.2 14.7 196 556-791 136-366 (444)
390 PRK08084 DNA replication initi 98.1 7E-06 1.5E-10 88.8 9.3 62 879-950 46-110 (235)
391 PRK08116 hypothetical protein; 98.1 7.4E-06 1.6E-10 90.2 9.4 100 878-989 114-220 (268)
392 PRK08939 primosomal protein Dn 98.1 7.5E-06 1.6E-10 91.7 8.9 105 878-993 156-264 (306)
393 PRK08116 hypothetical protein; 98.1 1.2E-05 2.6E-10 88.6 9.9 72 590-666 114-189 (268)
394 smart00350 MCM minichromosome 98.1 4.6E-06 9.9E-11 100.3 7.1 136 845-996 204-359 (509)
395 PRK06835 DNA replication prote 98.1 8.2E-06 1.8E-10 92.1 8.5 99 879-989 184-288 (329)
396 PF13401 AAA_22: AAA domain; P 98.1 2.4E-05 5.1E-10 76.1 10.4 79 590-668 4-100 (131)
397 COG1221 PspF Transcriptional r 98.1 4E-06 8.7E-11 95.6 5.6 123 841-989 75-223 (403)
398 PRK05642 DNA replication initi 98.1 1.3E-05 2.9E-10 86.6 9.3 63 879-951 46-111 (234)
399 PRK05707 DNA polymerase III su 98.1 1.5E-05 3.2E-10 90.2 9.9 98 876-989 20-145 (328)
400 PF03215 Rad17: Rad17 cell cyc 98.0 0.00013 2.7E-09 87.3 18.1 201 553-793 18-269 (519)
401 PRK10820 DNA-binding transcrip 98.0 7.9E-06 1.7E-10 98.5 7.9 137 841-1002 201-367 (520)
402 PRK08727 hypothetical protein; 98.0 1.8E-05 3.8E-10 85.5 9.8 64 879-952 42-108 (233)
403 PF13177 DNA_pol3_delta2: DNA 98.0 2.7E-05 5.8E-10 79.2 9.9 114 848-989 1-141 (162)
404 PRK09862 putative ATP-dependen 98.0 1.3E-05 2.9E-10 94.8 8.7 114 877-1006 209-391 (506)
405 PRK06921 hypothetical protein; 98.0 1.9E-05 4.2E-10 86.8 9.4 68 878-948 117-188 (266)
406 PF12774 AAA_6: Hydrolytic ATP 98.0 0.00011 2.3E-09 79.0 14.7 133 591-750 33-176 (231)
407 PRK09862 putative ATP-dependen 98.0 7.7E-05 1.7E-09 88.5 14.6 133 588-744 208-391 (506)
408 TIGR00368 Mg chelatase-related 98.0 2.2E-05 4.7E-10 93.4 9.8 26 590-615 211-236 (499)
409 COG0606 Predicted ATPase with 98.0 3.8E-06 8.3E-11 96.0 3.2 47 841-902 176-222 (490)
410 PRK07399 DNA polymerase III su 98.0 2.3E-05 5.1E-10 88.2 9.5 123 842-989 2-163 (314)
411 PRK08181 transposase; Validate 98.0 3.1E-05 6.7E-10 85.0 9.8 74 590-668 106-180 (269)
412 PRK13409 putative ATPase RIL; 98.0 0.0002 4.4E-09 87.6 17.9 28 875-902 362-389 (590)
413 PTZ00111 DNA replication licen 97.9 1.5E-05 3.4E-10 98.5 8.1 137 845-996 451-616 (915)
414 TIGR00602 rad24 checkpoint pro 97.9 3.1E-05 6.6E-10 94.1 10.4 101 841-950 81-208 (637)
415 PRK08058 DNA polymerase III su 97.9 2.8E-05 6.1E-10 88.3 9.6 118 842-989 3-150 (329)
416 COG0488 Uup ATPase components 97.9 8.6E-05 1.9E-09 88.8 13.9 32 586-617 25-56 (530)
417 PF00931 NB-ARC: NB-ARC domain 97.9 9.7E-05 2.1E-09 82.1 13.7 159 590-783 19-201 (287)
418 PRK12377 putative replication 97.9 4.1E-05 8.9E-10 83.1 10.2 72 591-667 102-175 (248)
419 PRK14087 dnaA chromosomal repl 97.9 2.9E-05 6.2E-10 91.8 9.6 72 878-951 141-220 (450)
420 PF13401 AAA_22: AAA domain; P 97.9 3.1E-05 6.8E-10 75.3 8.2 99 877-987 3-125 (131)
421 TIGR02031 BchD-ChlD magnesium 97.9 1.3E-05 2.9E-10 97.6 6.8 98 878-989 16-136 (589)
422 TIGR02237 recomb_radB DNA repa 97.9 5.7E-05 1.2E-09 80.1 10.8 81 586-669 8-111 (209)
423 PRK06526 transposase; Provisio 97.9 1.7E-05 3.6E-10 86.6 6.5 73 590-667 98-171 (254)
424 PF06068 TIP49: TIP49 C-termin 97.9 2.1E-05 4.5E-10 87.9 6.9 82 843-933 23-106 (398)
425 COG1474 CDC6 Cdc6-related prot 97.9 2.9E-05 6.3E-10 89.0 8.4 102 878-989 42-165 (366)
426 COG4619 ABC-type uncharacteriz 97.9 7.9E-05 1.7E-09 73.9 10.0 33 585-617 24-56 (223)
427 PF00308 Bac_DnaA: Bacterial d 97.9 3.8E-05 8.2E-10 82.1 8.6 70 879-950 35-110 (219)
428 PRK07952 DNA replication prote 97.9 8.2E-05 1.8E-09 80.5 11.2 72 591-667 100-174 (244)
429 KOG0927 Predicted transporter 97.9 0.00029 6.4E-09 81.5 15.9 30 873-902 411-440 (614)
430 PRK10365 transcriptional regul 97.9 0.00031 6.6E-09 83.3 16.9 196 556-791 141-371 (441)
431 PRK09183 transposase/IS protei 97.8 4.1E-05 9E-10 83.9 8.5 76 588-667 100-176 (259)
432 COG1224 TIP49 DNA helicase TIP 97.8 4.4E-05 9.5E-10 83.8 7.8 85 842-935 37-123 (450)
433 cd01120 RecA-like_NTPases RecA 97.8 7.3E-05 1.6E-09 75.0 8.8 105 881-989 2-136 (165)
434 PRK05917 DNA polymerase III su 97.8 0.00025 5.4E-09 78.3 13.2 125 590-741 19-154 (290)
435 PRK13406 bchD magnesium chelat 97.8 0.00012 2.7E-09 88.5 11.8 164 591-773 26-208 (584)
436 PF00910 RNA_helicase: RNA hel 97.8 9.4E-05 2E-09 69.7 8.5 94 881-989 1-107 (107)
437 PRK06964 DNA polymerase III su 97.8 0.0001 2.2E-09 83.6 10.0 117 876-1006 19-194 (342)
438 PRK06835 DNA replication prote 97.8 0.00012 2.5E-09 82.9 10.5 72 591-667 184-258 (329)
439 COG3267 ExeA Type II secretory 97.8 0.0011 2.3E-08 70.6 16.8 177 591-794 52-255 (269)
440 PRK06921 hypothetical protein; 97.8 7.8E-05 1.7E-09 82.1 8.8 72 590-666 117-188 (266)
441 PF14516 AAA_35: AAA-like doma 97.8 0.0013 2.9E-08 74.8 19.1 168 590-777 31-233 (331)
442 PTZ00111 DNA replication licen 97.7 3.6E-05 7.9E-10 95.4 6.7 145 590-755 492-658 (915)
443 PRK06620 hypothetical protein; 97.7 7.6E-05 1.6E-09 79.5 8.3 26 879-904 45-70 (214)
444 cd01120 RecA-like_NTPases RecA 97.7 0.00015 3.2E-09 72.8 9.9 74 593-669 2-99 (165)
445 COG4172 ABC-type uncharacteriz 97.7 0.00058 1.3E-08 76.5 14.7 71 874-953 309-380 (534)
446 PRK10938 putative molybdenum t 97.7 0.00023 5E-09 85.7 12.6 29 587-615 26-54 (490)
447 PF01695 IstB_IS21: IstB-like 97.7 3.6E-05 7.8E-10 79.5 4.3 73 589-666 46-119 (178)
448 TIGR02237 recomb_radB DNA repa 97.7 0.00013 2.9E-09 77.3 8.8 116 873-988 7-148 (209)
449 TIGR02012 tigrfam_recA protein 97.7 0.00018 3.9E-09 80.6 10.1 117 873-989 50-191 (321)
450 COG1239 ChlI Mg-chelatase subu 97.7 0.00025 5.3E-09 80.5 11.0 135 843-1004 16-219 (423)
451 PRK09700 D-allose transporter 97.7 0.00028 6.2E-09 85.3 12.5 29 587-615 28-56 (510)
452 PRK06851 hypothetical protein; 97.7 0.00036 7.8E-09 79.5 12.5 26 591-616 31-56 (367)
453 TIGR03269 met_CoM_red_A2 methy 97.7 0.00057 1.2E-08 82.9 15.1 28 587-614 23-50 (520)
454 PRK10636 putative ABC transpor 97.6 0.00039 8.4E-09 86.2 13.6 30 586-615 23-52 (638)
455 PRK15439 autoinducer 2 ABC tra 97.6 0.00035 7.5E-09 84.5 12.8 29 587-615 34-62 (510)
456 COG3283 TyrR Transcriptional r 97.6 0.00075 1.6E-08 74.3 13.7 206 552-792 202-432 (511)
457 PRK10762 D-ribose transporter 97.6 0.00042 9.2E-09 83.6 13.2 29 587-615 27-55 (501)
458 PRK08699 DNA polymerase III su 97.6 0.00015 3.2E-09 82.1 8.4 101 876-989 19-153 (325)
459 KOG1970 Checkpoint RAD17-RFC c 97.6 0.0029 6.3E-08 73.6 18.7 25 591-615 111-135 (634)
460 smart00763 AAA_PrkA PrkA AAA d 97.6 0.00013 2.9E-09 82.3 8.0 62 843-911 49-118 (361)
461 PRK15064 ABC transporter ATP-b 97.6 0.00066 1.4E-08 82.5 14.7 30 586-615 23-52 (530)
462 PRK11361 acetoacetate metaboli 97.6 4.8E-05 1E-09 90.6 4.6 112 878-1003 166-307 (457)
463 PRK04132 replication factor C 97.6 0.00018 3.9E-09 89.8 9.7 94 877-989 563-669 (846)
464 TIGR02915 PEP_resp_reg putativ 97.6 6.1E-05 1.3E-09 89.5 5.4 111 878-1002 162-302 (445)
465 PF03969 AFG1_ATPase: AFG1-lik 97.6 0.00016 3.4E-09 82.9 8.3 103 875-991 59-169 (362)
466 PF03215 Rad17: Rad17 cell cyc 97.6 0.00022 4.8E-09 85.2 9.6 101 878-986 45-173 (519)
467 cd03216 ABC_Carb_Monos_I This 97.6 0.00032 7E-09 71.4 9.6 76 585-666 21-111 (163)
468 PRK08939 primosomal protein Dn 97.6 0.00022 4.8E-09 80.0 9.1 73 589-666 155-228 (306)
469 PRK11147 ABC transporter ATPas 97.6 0.00086 1.9E-08 83.3 15.2 30 586-615 25-54 (635)
470 PRK13549 xylose transporter AT 97.6 0.00059 1.3E-08 82.5 13.4 29 587-615 28-56 (506)
471 PRK15115 response regulator Gl 97.6 4.8E-05 1E-09 90.3 3.7 114 878-1005 157-300 (444)
472 PRK10982 galactose/methyl gala 97.5 0.00052 1.1E-08 82.7 12.2 30 586-615 20-49 (491)
473 COG1241 MCM2 Predicted ATPase 97.5 0.00022 4.7E-09 86.6 8.7 143 591-757 320-486 (682)
474 PLN03073 ABC transporter F fam 97.5 0.0009 1.9E-08 83.6 14.4 29 874-902 531-559 (718)
475 COG1618 Predicted nucleotide k 97.5 0.0014 3.1E-08 64.9 12.7 27 591-617 6-32 (179)
476 KOG2170 ATPase of the AAA+ sup 97.5 0.0014 3.1E-08 71.0 13.6 117 557-698 85-206 (344)
477 PRK06871 DNA polymerase III su 97.5 0.00036 7.8E-09 78.6 9.7 97 876-989 22-146 (325)
478 cd01121 Sms Sms (bacterial rad 97.5 0.00069 1.5E-08 78.0 12.1 81 586-669 78-172 (372)
479 PRK10923 glnG nitrogen regulat 97.5 0.00023 4.9E-09 85.2 8.5 111 878-1002 161-301 (469)
480 PHA00729 NTP-binding motif con 97.5 0.00051 1.1E-08 72.9 10.0 24 880-903 19-42 (226)
481 PLN03210 Resistant to P. syrin 97.5 0.00082 1.8E-08 89.0 14.3 177 553-777 183-389 (1153)
482 COG1220 HslU ATP-dependent pro 97.5 0.00025 5.4E-09 77.5 7.5 85 845-931 16-105 (444)
483 PRK11823 DNA repair protein Ra 97.5 0.00073 1.6E-08 79.9 12.2 81 586-669 76-170 (446)
484 PF12774 AAA_6: Hydrolytic ATP 97.5 0.00031 6.8E-09 75.5 8.3 66 878-950 32-97 (231)
485 PRK09361 radB DNA repair and r 97.5 0.00075 1.6E-08 72.5 11.2 80 586-669 19-121 (225)
486 COG0593 DnaA ATPase involved i 97.5 0.00027 5.9E-09 81.1 8.0 118 877-1006 112-247 (408)
487 COG0606 Predicted ATPase with 97.4 6.8E-05 1.5E-09 86.0 3.0 49 550-615 175-223 (490)
488 COG1484 DnaC DNA replication p 97.4 0.00016 3.5E-09 79.0 5.7 75 589-667 104-179 (254)
489 KOG0066 eIF2-interacting prote 97.4 0.012 2.7E-07 66.3 20.1 30 873-902 608-637 (807)
490 COG3284 AcoR Transcriptional a 97.4 0.00063 1.4E-08 80.6 10.7 199 557-790 316-538 (606)
491 TIGR02012 tigrfam_recA protein 97.4 0.00091 2E-08 75.1 11.5 81 586-669 51-147 (321)
492 COG1125 OpuBA ABC-type proline 97.4 0.00071 1.5E-08 71.7 9.9 33 585-617 22-54 (309)
493 KOG0062 ATPase component of AB 97.4 0.012 2.7E-07 68.1 20.2 28 585-612 101-128 (582)
494 PF12780 AAA_8: P-loop contain 97.4 0.00028 6E-09 77.6 6.9 73 875-949 28-101 (268)
495 cd03283 ABC_MutS-like MutS-lik 97.4 0.001 2.3E-08 70.0 11.0 103 876-989 23-147 (199)
496 PRK09087 hypothetical protein; 97.4 0.00024 5.3E-09 76.3 6.3 55 879-949 45-99 (226)
497 PRK07993 DNA polymerase III su 97.4 0.00056 1.2E-08 77.7 9.5 98 876-989 22-147 (334)
498 COG1120 FepC ABC-type cobalami 97.4 0.00049 1.1E-08 74.4 8.5 30 586-615 24-53 (258)
499 PRK06090 DNA polymerase III su 97.4 0.0012 2.5E-08 74.4 11.7 98 876-989 23-147 (319)
500 cd00983 recA RecA is a bacter 97.4 0.00061 1.3E-08 76.5 9.3 116 874-989 51-191 (325)
No 1
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-119 Score=1014.38 Aligned_cols=822 Identities=35% Similarity=0.511 Sum_probs=612.6
Q ss_pred CeeEEEEeCCcccceeeCCHHHHHHHhhccccCCCCceEEEEEEeCCCC--eEEEEecCCcCCCCceeecHHHHhhcCCC
Q 001808 1 MELEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQ--RWVVAWSGATSSSSFIEVARQFAECISLA 78 (1010)
Q Consensus 1 ~~~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~--~~~~~w~g~~s~~~~iei~~~~a~~~gl~ 78 (1010)
|++.|++.+ +|+||||||..++..+... .|+.+|+..|.+.. .+++-|.|..++.+.||||+++|+.|||.
T Consensus 3 ~a~vV~~~~-~r~cfv~lP~ql~~ai~~~------~~~~av~~v~~~~~~~~s~~~g~~s~~se~~ieIn~~~A~~l~L~ 75 (952)
T KOG0735|consen 3 MACVVNYKS-LRSCFVNLPEQLLEAISEP------VQNYAVQAVVSKNPIKKSWVFGHGSGSSENVIEINRVYAHTLGLA 75 (952)
T ss_pred ceEEEEeee-chhhhhccHHHHHHHHhcc------ccCceeEEEEcCCChhheeecccCCCCccceEEeehhhHhhccCC
Confidence 677888888 9999999999999999863 45688999887643 23334455556668999999999999999
Q ss_pred CCCEEEEEEeecCccceEEEeecCCcchhHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEeccCCCCCee
Q 001808 79 DHTIVQVRVVSNVLKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVV 158 (1010)
Q Consensus 79 ~~~~v~~~~~~~~~~~~~v~veP~t~dDwEi~e~~a~~~e~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~ 158 (1010)
+|+.|.++++.+++.|++|+|||+|+|||||||+||+.+|.+||+|+|||++ ++||+|++++|+|+|+|+++.|++.||
T Consensus 76 e~~~V~l~~~~~v~~~~~V~VeP~TsdDWEIiElnA~~~e~~lL~Q~RIv~~-~~f~iwl~~~t~i~fqv~rl~Ps~~~g 154 (952)
T KOG0735|consen 76 ENQEVKLSIIDHVHEATQVEVEPVTSDDWEIIELNAEWLEENLLVQTRIVTP-EIFIIWLPSGTVIQFQVDRLIPSMLYG 154 (952)
T ss_pred CCCeEEEEEcCCccceeEEEEeeccCccHHHHHhhHHHHhhhhhhheeeccc-ceeEEEEcCccEEEEEEeeeeccccee
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EecCCCEEEEcccCCCCCCcccccchhhcccCcchhhcceeeeccCCCCcccccccCcceecccccceEEeCCCcccccc
Q 001808 159 QLVPGTEVAVAPKRRKNNVKKHEDSYMQAFNESTSIAKALLRVQDSDEGLSHKCNVKGVELGVALTSVAFINPETAENVS 238 (1010)
Q Consensus 159 ~l~~~tev~vapk~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 238 (1010)
||.++|||+||||+|+...+.+++.....+... +..+|. ......++|..+....+++||| +++...+
T Consensus 155 Rl~~~Tev~VaPK~~k~~l~~~~~g~~e~n~lk----s~~lr~------~~lrs~v~~~~~p~~n~s~vyi--~~aql~t 222 (952)
T KOG0735|consen 155 RLLRGTEVLVAPKPNKSALNVKENGVIEENTLK----SRSLRK------VQLRSVVEGRLLPDSNSSTVYI--NTAQLVT 222 (952)
T ss_pred eecCCceEEEecCcccchhhhhcccchhhhhhh----hhhhhh------hhhhhheecccccCcccceeee--cccccee
Confidence 999999999999999988644332222111110 011111 1234457788888878889998 3333222
Q ss_pred ccceeEEEeccCCCcCCCCCCCCCcccCCccccccccCCCcccccccceeEEEEEeeccccccceeecHHHHHHhhcccc
Q 001808 239 LCSLELVAILPRLSSKENNPENNAPRIKSNLTSKEISGGASTDKKECRQAVVHLLFSDSVAKGHVKIARALRLYLNAGLH 318 (1010)
Q Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~ 318 (1010)
.+....+++...++.+ + +.+ ..+.+. ....+.+-..++|...+|..|.+++.++|.++.+...
T Consensus 223 ---~q~~~~~~k~~Lr~ss---r-----~d~---~~~~~g---~~~Skvv~~~~~c~~q~P~~H~ai~~~l~~~~~tpe~ 285 (952)
T KOG0735|consen 223 ---AQGPALSVKLPLRQSS---R-----SDE---VYNDGG---NLKSKVVEQDVVCPKQIPEFHFAISKSLWLSYSTPED 285 (952)
T ss_pred ---ccCceeeeeccccCCc---c-----chh---HhhccC---cchhhhhcccccCCCCCCcceeeEehhHHHhhcCCcc
Confidence 2222223333322210 0 000 001100 1112223334677788999999999999999974200
Q ss_pred ceEEEEeecccccCCCCeeeeccceeeeccccccccccccccccccccccccccccCCccccCCCCCchhhHHhhhcCCC
Q 001808 319 SWVYLKKCTVNLKKEIPMVSLSPCHFKMLEKDKAFGIGLELDNKNHKTKKMLEKTSSGIYMDDGDLSAEDDIIAALSSEP 398 (1010)
Q Consensus 319 ~~v~~~~~~~~~~~~~~~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (1010)
. + +++.++ ..|..++.+..+++
T Consensus 286 ----------------------d--i-------k~~l~~------------------------~iw~~~n~i~~~~~--- 307 (952)
T KOG0735|consen 286 ----------------------D--I-------KTGLKF------------------------VIWNLNNPISSSKF--- 307 (952)
T ss_pred ----------------------c--h-------hcCcee------------------------eeeccccchhhhhh---
Confidence 0 1 111111 11221111111100
Q ss_pred CCCchhHHH--H-hhhhhhhhHHHHHHHHHHHhhhhccccCccccccccCccceeeEEEeccccCCCCCCCCCccccchh
Q 001808 399 SSKEDEEAV--Y-QFENKKGLECLLHTWLLAQLTAVASNIGSEFNTLVLSNETLLHFEVKGYKSGTYGKVPASCNGALEN 475 (1010)
Q Consensus 399 ~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1010)
.++.. | .-+.++++. .+|.++ +..+++++.+ ++.+|++....++.....+..++..+.+
T Consensus 308 ----i~~l~~vg~p~~tkk~l~--------~eL~A~----~~~ts~li~~--t~k~~~ie~~es~~~l~nq~eV~~~w~q 369 (952)
T KOG0735|consen 308 ----IEELKRVGLPDETKKNLS--------SELVAA----KLKTSYLIDG--TLKLFEIEVLESVSSLSNQEEVVRLWDQ 369 (952)
T ss_pred ----hHHHHhccCCcccccchh--------Hhhhhh----hhccccccCC--ceEEEEeeccccccccccchHHhhHHHh
Confidence 00000 0 001222222 122221 2334565655 6688888763332222222222322222
Q ss_pred hhhhhccccceeeecccccccccCCCCcchhhhHhhhccCCCchHHHHHHhcccCCCCccceeeecccCcccCccccccc
Q 001808 476 KTKARELRTEIFCVLTFSEESLHGGKNNAYELTLEARGQQNNNTEAVRQLFGKLNSGDSVSFYTVKERGSTQGFDSNVSS 555 (1010)
Q Consensus 476 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~vs~~~~~~~~~~~~~~~~~~~ 555 (1010)
...-+..+.|..+.-.+..+.+.+.|...+.+. ....++.+
T Consensus 370 ~~vt~~~~~ei~~~~~v~~~~~~g~K~~~~~l~---------------------------------~~~~e~d~------ 410 (952)
T KOG0735|consen 370 LKVTKMPPLEIKITSDVNLPVLAGIKENSPDLV---------------------------------MSPFEHDF------ 410 (952)
T ss_pred hccccCCchheeeeeeecchhhhcchhcCcccc---------------------------------cCcCCCce------
Confidence 211112222222222222222222111111000 00011111
Q ss_pred cccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC
Q 001808 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1010)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1010)
+-.....++.-+ ..++| +..++++||+||+|||||.|+++++.++..+ ..+|+.+++|+.+.+.
T Consensus 411 -i~~~s~kke~~n---~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~ 474 (952)
T KOG0735|consen 411 -IQVPSYKKENAN---QELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGS 474 (952)
T ss_pred -eecchhhhhhhh---hhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccch
Confidence 101111111111 22222 4556889999999999999999999998733 4499999999999999
Q ss_pred chhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEe
Q 001808 636 KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS 715 (1010)
Q Consensus 636 ~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIat 715 (1010)
..+.+.+.+..+|.+|.|++|+|++|||+|.|++ .++.++++.....+++..++.+.+..+...+. .+.+||+
T Consensus 475 ~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~-~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~------~ia~Iat 547 (952)
T KOG0735|consen 475 SLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS-ASSNENGQDGVVSERLAAFLNQVIKIYLKRNR------KIAVIAT 547 (952)
T ss_pred hHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc-cCcccCCcchHHHHHHHHHHHHHHHHHHccCc------EEEEEEe
Confidence 9999999999999999999999999999999996 44556677777888899988888888776543 4899999
Q ss_pred cCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHh
Q 001808 716 AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGR 795 (1010)
Q Consensus 716 tn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r 795 (1010)
.+....+++.|.++++|+.++.+++|+..+|.+||+.++++....+..+.++.++..|+||.+.|+..+++||+|.++..
T Consensus 548 ~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~le 627 (952)
T KOG0735|consen 548 GQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLE 627 (952)
T ss_pred chhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777777778888999999999999999999999999843
Q ss_pred hcccCCcccccccCcccccchhhhhhccccccccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCC
Q 001808 796 YLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL 875 (1010)
Q Consensus 796 ~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~l 875 (1010)
... .....++.++|.+++++|.|.++|++.+.++. ..+|+|+||+.++++.+.++++||.+|+.+|.++|+
T Consensus 628 ris-------~~~klltke~f~ksL~~F~P~aLR~ik~~k~t--gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~pl 698 (952)
T KOG0735|consen 628 RIS-------NGPKLLTKELFEKSLKDFVPLALRGIKLVKST--GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPL 698 (952)
T ss_pred Hhc-------cCcccchHHHHHHHHHhcChHHhhhccccccC--CCCceecccHHHHHHHHHHHHhccccchHHHhhCCc
Confidence 321 12236899999999999999999999999886 489999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCC
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH 955 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~ 955 (1010)
|.+.|+|||||||||||.||.++|..++++||+++++|+++||+|++|+++|.+|.+|+..+||||||||||+++|+|||
T Consensus 699 r~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh 778 (952)
T KOG0735|consen 699 RLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH 778 (952)
T ss_pred ccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC---------CcCCcceEEEecCCCcc
Q 001808 956 DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 956 ~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~---------r~gR~d~~l~~~~p~~~ 1006 (1010)
+++|+++||+||||++|||+|+.+||+|+|||+| ||||||+.+||++|+.+
T Consensus 779 DsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~ 838 (952)
T KOG0735|consen 779 DSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEP 838 (952)
T ss_pred CCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcH
Confidence 9999999999999999999999999999999999 99999999999999853
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-78 Score=672.34 Aligned_cols=437 Identities=32% Similarity=0.514 Sum_probs=392.7
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
+..|.+++|++..+.++.+.+..+.. +..|..+|+.||+|||||||||||||+||+++|++++ .+++.++.
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~---Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isA 256 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKH---PEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISA 256 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcC---chhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecc
Confidence 45688999999999999887766544 5689999999999999999999999999999999998 88999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+.+...|+.+++++++|++|....|||+||||||.+.+++.. .+.+..+++..+|+..||++..... ...+
T Consensus 257 peivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~----aqreMErRiVaQLlt~mD~l~~~~~---~g~~ 329 (802)
T KOG0733|consen 257 PEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE----AQREMERRIVAQLLTSMDELSNEKT---KGDP 329 (802)
T ss_pred hhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----HHHHHHHHHHHHHHHhhhccccccc---CCCC
Confidence 99999999999999999999999999999999999999865433 2334556889999999999875422 1136
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
|+||++||+++.++++|+|+|||++.|.+..|+..+|.+||+.++++..+.- +-.+..||..|.||.++||..||..|.
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988654432 345889999999999999999999999
Q ss_pred HHHHHhhcccCC----------c-----cc--c----------------------------------cccCcccccchhh
Q 001808 790 HAAVGRYLHSDS----------S-----FE--K----------------------------------HIKPTLVRDDFSQ 818 (1010)
Q Consensus 790 ~~a~~r~~~~~~----------~-----~~--~----------------------------------~~~~~lt~eDf~~ 818 (1010)
..|+.|.+...+ . .. + .....+..+||..
T Consensus 409 ~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~ 488 (802)
T KOG0733|consen 409 FVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEE 488 (802)
T ss_pred HHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHH
Confidence 999998764211 0 00 0 0012356689999
Q ss_pred hhhccccccccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHH
Q 001808 819 AMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAA 898 (1010)
Q Consensus 819 Al~~~~P~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~l 898 (1010)
|+....|++.|+.....++ +.|+|||++++++.+|...+.+|.++++.|...|+..+.|+||+||||||||.|||++
T Consensus 489 Al~~iQPSakREGF~tVPd---VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAV 565 (802)
T KOG0733|consen 489 ALSKIQPSAKREGFATVPD---VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAV 565 (802)
T ss_pred HHHhcCcchhcccceecCC---CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHH
Confidence 9999999999998888875 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcccc
Q 001808 899 AAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL 978 (1010)
Q Consensus 899 A~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~ 978 (1010)
|++.|.+|+.|+++|++++|+|++|+.+|++|++|+...||||||||+|++.|+|++...+++.||+||||++|||++.+
T Consensus 566 ANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 566 ANEAGANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred hhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeCCC---------CcCCcceEEEecCCCcc
Q 001808 979 TGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 979 ~~v~viatTn~---------r~gR~d~~l~~~~p~~~ 1006 (1010)
.+||||||||| ||||||++||+++|+.+
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 99999999999 99999999999999864
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-69 Score=610.83 Aligned_cols=412 Identities=33% Similarity=0.549 Sum_probs=378.7
Q ss_pred cccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc
Q 001808 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1010)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1010)
..++|....+..+.+.+..-+. ....+...++++|+++|+|||||+|||.+++++|++.+ ++++.+++..+.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~--~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~~~i~~peli 255 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLR--HPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFLFLINGPELI 255 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhc--chhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC------ceeEecccHHHH
Confidence 4677888888888887655332 45678889999999999999999999999999999988 899999999999
Q ss_pred CCchhhHHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEE
Q 001808 634 LEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1010)
Q Consensus 634 ~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~v 712 (1010)
.+..++.++.++..|++|..++ |+++||||+|.+++++..... ...++..+|+.+++..... +.+++
T Consensus 256 ~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-----~e~Rv~sqlltL~dg~~~~-------~~viv 323 (693)
T KOG0730|consen 256 SKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-----VESRVVSQLLTLLDGLKPD-------AKVIV 323 (693)
T ss_pred HhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-----HHHHHHHHHHHHHhhCcCc-------CcEEE
Confidence 9999999999999999999999 999999999999975543332 4458888899999987633 25999
Q ss_pred EEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 713 VASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 713 Iattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
++++|+++.||++++| |||+..+.+..|+..+|.+|++.+..+.+.. ++..+..+|..++||.++||..+|+.|...+
T Consensus 324 l~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 324 LAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999887766 6678999999999999999999999998877
Q ss_pred HHhhcccCCcccccccCcccccchhhhhhccccccccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhcc
Q 001808 793 VGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQ 872 (1010)
Q Consensus 793 ~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~ 872 (1010)
.++ +.++|..|+.+..|+.+|......+. +.|+||||++++|..|.+.++||.+|++.|.+
T Consensus 402 ~r~----------------~~~~~~~A~~~i~psa~Re~~ve~p~---v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r 462 (693)
T KOG0730|consen 402 TRR----------------TLEIFQEALMGIRPSALREILVEMPN---VSWDDIGGLEELKRELQQAVEWPLKHPEKFAR 462 (693)
T ss_pred hhh----------------hHHHHHHHHhcCCchhhhheeccCCC---CChhhccCHHHHHHHHHHHHhhhhhchHHHHH
Confidence 655 66899999999999999998866654 89999999999999999999999999999999
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
+++.|+.|+|||||||||||++||++|.+++.+|+++++++++++|+|++|+.++++|++|+..+|||+||||||+++..
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~ 542 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGS 542 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC---------CcCCcceEEEecCCCcc
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~---------r~gR~d~~l~~~~p~~~ 1006 (1010)
|+++.+++++||+++||++|||++...+|+||||||| ||||||++||+++||.+
T Consensus 543 R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 543 RGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred cCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 9888889999999999999999999999999999999 99999999999999864
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-59 Score=535.74 Aligned_cols=393 Identities=37% Similarity=0.592 Sum_probs=328.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1010)
...+||+|+||||||++++++|++++ .|++.++|..+.....+..+.++..+|..|....|+|||+-++|.+..
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg------~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i 504 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELG------LHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI 504 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhC------CceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee
Confidence 34599999999999999999999999 999999999999999999999999999999999999999999999863
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHH
Q 001808 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1010)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~I 749 (1010)
+.++. ...++...+...+.. ........++++|+++++.+.+++.+++ .|...+.++.|+.++|.+|
T Consensus 505 ---d~dgg----ed~rl~~~i~~~ls~----e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~i 571 (953)
T KOG0736|consen 505 ---DQDGG----EDARLLKVIRHLLSN----EDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEI 571 (953)
T ss_pred ---cCCCc----hhHHHHHHHHHHHhc----ccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHH
Confidence 22221 122444444444330 0011123479999999999999999999 7777899999999999999
Q ss_pred HHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccC---------CcccccccCcccccchhhhh
Q 001808 750 LEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSD---------SSFEKHIKPTLVRDDFSQAM 820 (1010)
Q Consensus 750 L~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~---------~~~~~~~~~~lt~eDf~~Al 820 (1010)
|+.++....+. .+..+..++.+|.||+.+|+..++..+-..+..+..... ..........++++||.+++
T Consensus 572 Lq~y~~~~~~n-~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kal 650 (953)
T KOG0736|consen 572 LQWYLNHLPLN-QDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKAL 650 (953)
T ss_pred HHHHHhccccc-hHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHH
Confidence 99998764432 234577899999999999999998776444433322111 11111223568899999999
Q ss_pred hccccccccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHH
Q 001808 821 HEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAA 900 (1010)
Q Consensus 821 ~~~~P~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~ 900 (1010)
.+...... .....|..+.+.|+||||++++|..+.+++.+|++|+++|.. ++++++|+|||||||||||.+|||+|.
T Consensus 651 s~~~~~fs--~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 651 SRLQKEFS--DAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred HHHHHhhh--hhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHh
Confidence 87554332 234556667899999999999999999999999999999986 678899999999999999999999999
Q ss_pred HcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCC--CCCCcchHHHHHHHHHHhcCcc--
Q 001808 901 ACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG--HDNTGVTDRVVNQFLTELDGVE-- 976 (1010)
Q Consensus 901 ~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~--~~~~~~~~rv~~~lL~~ldg~e-- 976 (1010)
+|..+|++|+++|++++|+|++|+++|++|++||.++||||||||+|+++|+|| +|++|+.+||+.|||.+|||+.
T Consensus 728 EcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~ 807 (953)
T KOG0736|consen 728 ECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS 807 (953)
T ss_pred hceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC
Confidence 999999999999999999999999999999999999999999999999999997 5789999999999999999998
Q ss_pred ccCcEEEEEeCCC---------CcCCcceEEEecCCCc
Q 001808 977 VLTGVFVFAATRL---------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 977 ~~~~v~viatTn~---------r~gR~d~~l~~~~p~~ 1005 (1010)
..+.||||+|||| |||||||.+|++.+..
T Consensus 808 ~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 808 SSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred CCCceEEEecCCCccccChhhcCCCccceeEEecCCcc
Confidence 5679999999999 9999999999998864
No 5
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.5e-54 Score=537.72 Aligned_cols=434 Identities=31% Similarity=0.514 Sum_probs=374.3
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+++++|++..++.+.+.+...+ ..+..+..+++.++.++||+||||||||++++++|++++ ..++.+++
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~--~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~------~~~i~i~~ 245 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPM--KHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG------AYFISING 245 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHh--hCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEec
Confidence 3567789999999999988876543 346788899999999999999999999999999999987 67888999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+...+.+..++.+..+|+.+....|+||||||+|.+.+.+.... ......+...|...++.+... +.
T Consensus 246 ~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~----~~~~~~~~~~Ll~~ld~l~~~-------~~ 314 (733)
T TIGR01243 246 PEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT----GEVEKRVVAQLLTLMDGLKGR-------GR 314 (733)
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc----chHHHHHHHHHHHHhhccccC-------CC
Confidence 9888888888888999999999999999999999999986443221 122345667777888766432 25
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+++|+++|.++.+++++++++||+..+.++.|+.++|.+|++.+.....+ ..+..+..++..++||+++|+..+++.|.
T Consensus 315 vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 315 VIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred EEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999976654322 13445888999999999999999999999
Q ss_pred HHHHHhhcccCCc------c--cccccCcccccchhhhhhccccccccccccccCCCCCCCcCCCCchhhHHHHHHHHhh
Q 001808 790 HAAVGRYLHSDSS------F--EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIE 861 (1010)
Q Consensus 790 ~~a~~r~~~~~~~------~--~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~ 861 (1010)
..++++....... . .......++.+||..|+....|+.+++.....+ ...|++++|++.+++.+.+.+.
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~---~~~~~di~g~~~~k~~l~~~v~ 470 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVP---NVRWSDIGGLEEVKQELREAVE 470 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhcccc---ccchhhcccHHHHHHHHHHHHH
Confidence 9888876532110 0 011234578899999999999998877665554 4799999999999999999999
Q ss_pred ccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEE
Q 001808 862 LPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLL 941 (1010)
Q Consensus 862 ~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VL 941 (1010)
||.++++.+.+.+++++.++|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++.+|+.|+...||||
T Consensus 471 ~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~ii 550 (733)
T TIGR01243 471 WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAII 550 (733)
T ss_pred hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccCCCCCCC-CCcchHHHHHHHHHHhcCccccCcEEEEEeCCC---------CcCCcceEEEecCCCcc
Q 001808 942 FFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 942 fiDEid~l~~~R~~~-~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~---------r~gR~d~~l~~~~p~~~ 1006 (1010)
||||+|+++++|+.+ ..++.++++++||++|||++..++++||+|||+ ||||||+.+++++|+.+
T Consensus 551 fiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~ 625 (733)
T TIGR01243 551 FFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEE 625 (733)
T ss_pred EEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHH
Confidence 999999999999754 455688999999999999999999999999999 89999999999999975
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-44 Score=428.93 Aligned_cols=397 Identities=32% Similarity=0.491 Sum_probs=342.8
Q ss_pred chhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEE
Q 001808 580 LWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIV 659 (1010)
Q Consensus 580 ~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL 659 (1010)
..+..++..++.+++++||||+|||+++++++.. . .+...++......++.+..+..+...|..+....|+++
T Consensus 8 ~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 8 ELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-G------AEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred HHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-c------CcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4456677888899999999999999999999998 3 33367788888888888889999999999999999999
Q ss_pred EEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCC
Q 001808 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (1010)
Q Consensus 660 ~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~ 739 (1010)
++||+|.+.+.+.. ........+...+...++... . +.+.+++.++.+..+++++.+++||+..+.+.
T Consensus 81 ~~d~~~~~~~~~~~----~~~~~~~~v~~~l~~~~d~~~-~-------~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 148 (494)
T COG0464 81 FIDEIDALAPKRSS----DQGEVERRVVAQLLALMDGLK-R-------GQVIVIGATNRPDGLDPAKRRPGRFDREIEVN 148 (494)
T ss_pred eechhhhcccCccc----cccchhhHHHHHHHHhccccc-C-------CceEEEeecCCccccChhHhCccccceeeecC
Confidence 99999999865544 122233466677777777655 1 13788889999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhh
Q 001808 740 APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQA 819 (1010)
Q Consensus 740 ~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~A 819 (1010)
.|+...+.+|+.......... .+.....++..+.||.++|+..++..+...+..+.. ........++.+++.++
T Consensus 149 ~~~~~~~~ei~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~~~ 222 (494)
T COG0464 149 LPDEAGRLEILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDFEEA 222 (494)
T ss_pred CCCHHHHHHHHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHHHHH
Confidence 999999988888655432222 245688899999999999999999888877777742 01112345788999999
Q ss_pred hhccccccccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHH
Q 001808 820 MHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAA 899 (1010)
Q Consensus 820 l~~~~P~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA 899 (1010)
++...|+ +++....+ ...|.++||++.+++.+.+.+++++++++.|...+++++.++||+||||||||++|+++|
T Consensus 223 l~~~~~~--~~~~~~~~---~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava 297 (494)
T COG0464 223 LKKVLPS--RGVLFEDE---DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVA 297 (494)
T ss_pred HHhcCcc--cccccCCC---CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHH
Confidence 9999887 44444444 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccC
Q 001808 900 AACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLT 979 (1010)
Q Consensus 900 ~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~ 979 (1010)
.+++.+|+.+++++++++|+|+++++++.+|..|+...||||||||+|++++.|+.+..+...|++++||++|||++..+
T Consensus 298 ~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 298 LESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred hhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 99999999999999999999999999999999999999999999999999999998888877899999999999999999
Q ss_pred cEEEEEeCCC---------CcCCcceEEEecCCCcc
Q 001808 980 GVFVFAATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 980 ~v~viatTn~---------r~gR~d~~l~~~~p~~~ 1006 (1010)
+|+||+|||+ ||||||+.+++++|+.+
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 9999999999 99999999999999965
No 7
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-36 Score=330.98 Aligned_cols=412 Identities=20% Similarity=0.295 Sum_probs=299.8
Q ss_pred CccccccccccchhhHHHHHHHH--HHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEE
Q 001808 548 GFDSNVSSLSWMGTTASDVINRI--KVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIV 625 (1010)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l--~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~ 625 (1010)
+++..-..++|++....+|-++. +.+..| ....++|++.-+|+|||||||||||.+||.+.+.|+.+.. .
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp---~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAreP-----K 286 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPP---EVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREP-----K 286 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCH---HHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCC-----c
Confidence 34444557899999999998866 334443 4678899999999999999999999999999999986543 3
Q ss_pred EEecccccCCchhhHHHHHHHHHHHHHhc--------CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001808 626 FVCCSRLSLEKGPIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1010)
Q Consensus 626 ~i~~s~l~~~~~~~~~~~l~~~f~~a~~~--------~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1010)
.++.-.+..+++|+.++.++.+|..|... .-.|+++||+|+++.+|+...++ ...-..+.++|+.-||..
T Consensus 287 IVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~--TGVhD~VVNQLLsKmDGV 364 (744)
T KOG0741|consen 287 IVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS--TGVHDTVVNQLLSKMDGV 364 (744)
T ss_pred ccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC--CCccHHHHHHHHHhcccH
Confidence 47888888999999999999999988542 12499999999999766655442 223347788888888876
Q ss_pred ccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh---cccccChHHHHhHhhhcC
Q 001808 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR---RSLECSDEILLDVASKCD 774 (1010)
Q Consensus 698 ~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~---~~~~~~~~~l~~la~~t~ 774 (1010)
..- .++++|+.||+.+.+|.+|+|||||..++++..||+..|.+||+.+..+ ++.--++-.+.++|..|.
T Consensus 365 eqL-------NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTK 437 (744)
T KOG0741|consen 365 EQL-------NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTK 437 (744)
T ss_pred Hhh-------hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhc
Confidence 543 2699999999999999999999999999999999999999999865443 333334556999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHhhcccCC----cccccccCcccccchhhhhhcccccccccc-cc-ccCCCCCCCcCCCCc
Q 001808 775 GYDAYDLEILVDRTVHAAVGRYLHSDS----SFEKHIKPTLVRDDFSQAMHEFLPVAMRDI-TK-TSAEGGRSGWDDVGG 848 (1010)
Q Consensus 775 g~s~~DL~~Lv~~A~~~a~~r~~~~~~----~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v-~~-~~~~~~~~~~~dI~G 848 (1010)
.|++++|+.+++.|...|+.|...... .....+...++++||..|+.+..|.--..- .+ .....+...|....
T Consensus 438 NfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v- 516 (744)
T KOG0741|consen 438 NFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPV- 516 (744)
T ss_pred CCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccH-
Confidence 999999999999999999988774431 112334567899999999999888632110 00 00011223344321
Q ss_pred hhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccH----H
Q 001808 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASE----Q 924 (1010)
Q Consensus 849 l~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se----~ 924 (1010)
-+.+.+-. .+.+..++....+-..+||.||||+|||+||..+|...++||+.+-.++-+ +|-+| .
T Consensus 517 ----~~il~~G~----llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~ 585 (744)
T KOG0741|consen 517 ----TRILDDGK----LLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCA 585 (744)
T ss_pred ----HHHHhhHH----HHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHH
Confidence 11111111 111111222334556899999999999999999999999999998666533 45554 4
Q ss_pred HHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc-ccCcEEEEEeCCC
Q 001808 925 AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-VLTGVFVFAATRL 989 (1010)
Q Consensus 925 ~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e-~~~~v~viatTn~ 989 (1010)
.++.+|+.|...+-+|+++|+++.+..--.-+ -.++.-++.+|+-.+.... ...+.+|++||++
T Consensus 586 ~i~k~F~DAYkS~lsiivvDdiErLiD~vpIG-PRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~ 650 (744)
T KOG0741|consen 586 HIKKIFEDAYKSPLSIIVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSR 650 (744)
T ss_pred HHHHHHHHhhcCcceEEEEcchhhhhcccccC-chhhHHHHHHHHHHhccCCCCCceEEEEecccH
Confidence 69999999999999999999999886321111 1134455555555555333 3357999999998
No 8
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=319.18 Aligned_cols=247 Identities=22% Similarity=0.330 Sum_probs=215.3
Q ss_pred ccccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEe
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~ 628 (1010)
.+.++..++|++.++++|.+.+.. .-..+.+|..+|+.||+|||||||||||||.||||+|+... +.|+.+.
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VEL--PL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrvv 217 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVEL--PLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRVV 217 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcc--cccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEec
Confidence 456789999999999999997755 33456799999999999999999999999999999999987 8899999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCC
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
.+.+..++.|+-.+.++++|..|..++|+|+||||+|++.+.+.+...+.+.+.+ +..-.|++.||.+... +
T Consensus 218 gSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQ-RTmleLL~qlDGFD~~-------~ 289 (406)
T COG1222 218 GSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQ-RTMLELLNQLDGFDPR-------G 289 (406)
T ss_pred cHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHH-HHHHHHHHhccCCCCC-------C
Confidence 9999999999999999999999999999999999999999888776655444444 4444466777777654 4
Q ss_pred cEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccCh-HHHHhHhhhcCCCChhhHHHHHHH
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-EILLDVASKCDGYDAYDLEILVDR 787 (1010)
Q Consensus 709 ~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~-~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1010)
+|-+|++||+++.|||+|+|+|||++.|+||.|+.+.|.+||+.+.++.. +.+ -.++.+|..|+|++++|++.+|..
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~--l~~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN--LADDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc--CccCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 69999999999999999999999999999999999999999998877644 444 359999999999999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCcccccchhhhhhccc
Q 001808 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1010)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1010)
|-+.|++. .+..++++||.+|.+...
T Consensus 368 AGm~AiR~-----------~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 368 AGMFAIRE-----------RRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HhHHHHHh-----------ccCeecHHHHHHHHHHHH
Confidence 99999876 336799999999988753
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-36 Score=321.29 Aligned_cols=168 Identities=35% Similarity=0.539 Sum_probs=159.7
Q ss_pred CCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhh
Q 001808 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1010)
Q Consensus 839 ~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ 918 (1010)
+.+.|++|||+++..+.++|.+++|+++|++|...|+.|+.|+|||||||||||.||||+|+..+..|+.+.++++..+|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY 225 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY 225 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcch---HHHHHHHHHHhcCccccCcEEEEEeCCC------
Q 001808 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATRL------ 989 (1010)
Q Consensus 919 ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~---~rv~~~lL~~ldg~e~~~~v~viatTn~------ 989 (1010)
+|+..+-+|++|..|+..+|||+||||||+++.+|-.++++-. .|.+-+||++|||++.+++|-|||||||
T Consensus 226 iGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP 305 (406)
T COG1222 226 IGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP 305 (406)
T ss_pred hccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence 9999999999999999999999999999999999976655433 4778889999999999999999999999
Q ss_pred ---CcCCcceEEEecCCCcc
Q 001808 990 ---EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 ---r~gR~d~~l~~~~p~~~ 1006 (1010)
|||||||.|+||+|+.+
T Consensus 306 ALLRPGR~DRkIEfplPd~~ 325 (406)
T COG1222 306 ALLRPGRFDRKIEFPLPDEE 325 (406)
T ss_pred hhcCCCcccceeecCCCCHH
Confidence 99999999999999864
No 10
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-32 Score=307.99 Aligned_cols=247 Identities=20% Similarity=0.312 Sum_probs=214.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
+.+.++++|++..+.++.+.+. .....+..|.++++.||+|||||||||||||++||++|.+.+ .+|+.+.+
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~--~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~------~nFlsvkg 501 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVE--WPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG------MNFLSVKG 501 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHh--hhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc------CCeeeccC
Confidence 4557788888887777777553 344467789999999999999999999999999999999988 88999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+..+|+|+.++.++++|+.|+...|+|+||||+|++...|+...+ ....+++.+|++.||.+.... +
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~----~v~~RVlsqLLtEmDG~e~~k-------~ 570 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS----GVTDRVLSQLLTEMDGLEALK-------N 570 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc----chHHHHHHHHHHHcccccccC-------c
Confidence 99999999999999999999999999999999999999976653222 566799999999999887653 5
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChH-HHHhHhhhcCCCChhhHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~-~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
|++||+||+++.||+++.|||||+..+++|+||.+.|.+||+.++++.. ++++ .++.||..|+||+++||..+|++|
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~T~g~SGAel~~lCq~A 648 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQATEGYSGAEIVAVCQEA 648 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHHhccCChHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887644 4444 689999999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhccccc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1010)
+..|+++.. +...++.++|.+|++...++
T Consensus 649 ~~~a~~e~i---------~a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 649 ALLALRESI---------EATEITWQHFEEALKAVRPS 677 (693)
T ss_pred HHHHHHHhc---------ccccccHHHHHHHHHhhccc
Confidence 999988743 23568889999999876654
No 11
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=1.4e-30 Score=304.22 Aligned_cols=304 Identities=20% Similarity=0.357 Sum_probs=228.9
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccc
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~ 734 (1010)
.|++++|.|+|.++. + . .+.+.|.++........ ..+++.+. .-.+|+.|.+ +..
T Consensus 81 ~~~~~vl~d~h~~~~---~------~----~~~r~l~~l~~~~~~~~-------~~~i~~~~--~~~~p~el~~---~~~ 135 (489)
T CHL00195 81 TPALFLLKDFNRFLN---D------I----SISRKLRNLSRILKTQP-------KTIIIIAS--ELNIPKELKD---LIT 135 (489)
T ss_pred CCcEEEEecchhhhc---c------h----HHHHHHHHHHHHHHhCC-------CEEEEEcC--CCCCCHHHHh---cee
Confidence 478999999999872 1 1 23333444333322211 23344333 2457888775 344
Q ss_pred cccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCccccc
Q 001808 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRD 814 (1010)
Q Consensus 735 ~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~e 814 (1010)
.+.+|.|+.+|+.++++.+....+...++..++.++..+.|++..+++.++.++.... ..++.+
T Consensus 136 ~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~----------------~~~~~~ 199 (489)
T CHL00195 136 VLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY----------------KTIDEN 199 (489)
T ss_pred EEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------------CCCChh
Confidence 7899999999999999888776677788999999999999999999998887754210 112222
Q ss_pred chhhhhhcccccccc-ccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHH
Q 001808 815 DFSQAMHEFLPVAMR-DITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTH 893 (1010)
Q Consensus 815 Df~~Al~~~~P~~lr-~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~ 893 (1010)
++...++.......+ ++....+ ....|+++||++.+|+.+.+.... +.....+.++.++.|+||+||||||||+
T Consensus 200 ~~~~i~~~k~q~~~~~~~le~~~--~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTl 274 (489)
T CHL00195 200 SIPLILEEKKQIISQTEILEFYS--VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSL 274 (489)
T ss_pred hHHHHHHHHHHHHhhhccccccC--CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHH
Confidence 222222211111000 1111111 246799999999999999876542 3344556788889999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCC-CCCCcchHHHHHHHHHHh
Q 001808 894 IVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG-HDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 894 lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~-~~~~~~~~rv~~~lL~~l 972 (1010)
+|+++|.+++.+++.+++++++++|+|+++.+++.+|+.|+...||||||||+|+++++++ .++.+...|++++||++|
T Consensus 275 lAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l 354 (489)
T CHL00195 275 TAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWL 354 (489)
T ss_pred HHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998654 345677899999999999
Q ss_pred cCccccCcEEEEEeCCC---------CcCCcceEEEecCCCcc
Q 001808 973 DGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~---------r~gR~d~~l~~~~p~~~ 1006 (1010)
+ +...+|+||||||+ |+||||+.+++++|+.+
T Consensus 355 ~--~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 355 S--EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred h--cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 8 55678999999998 89999999999999964
No 12
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-31 Score=298.12 Aligned_cols=259 Identities=24% Similarity=0.316 Sum_probs=215.0
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
+.+..++++++....++...+ +...+++..|..+|+..|.|||||||||||||.||+|+|++.+ .+|+.+..
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI--~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag------~NFisVKG 578 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAI--LAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG------ANFISVKG 578 (802)
T ss_pred CCChhhcccHHHHHHHHHHHH--hhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc------CceEeecC
Confidence 455566666666555554433 4455678899999999999999999999999999999999988 88999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
-.|.++|+|+.+..++.+|+.|+..+||||||||+|+|++.+++.. .....++.++|+..||....+. +
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~----s~~s~RvvNqLLtElDGl~~R~-------g 647 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG----SSVSSRVVNQLLTELDGLEERR-------G 647 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC----chhHHHHHHHHHHHhccccccc-------c
Confidence 9999999999999999999999999999999999999998777655 3445688999999999887654 4
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChH-HHHhHhhhcC--CCChhhHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCD--GYDAYDLEILVD 786 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~-~l~~la~~t~--g~s~~DL~~Lv~ 786 (1010)
|++||+||+++-+||+++|+|||+..++++.|+.++|.+||+.+.+.....++++ .++.||+.+. ||+++||..||+
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999988655555555 5889998765 999999999999
Q ss_pred HHHHHHHHhhcccCCcc-cccc----cCcccccchhhhhhcccccc
Q 001808 787 RTVHAAVGRYLHSDSSF-EKHI----KPTLVRDDFSQAMHEFLPVA 827 (1010)
Q Consensus 787 ~A~~~a~~r~~~~~~~~-~~~~----~~~lt~eDf~~Al~~~~P~~ 827 (1010)
.|...|+++.+...... .+.. .-.++..+|+.|+....|+.
T Consensus 728 eAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 728 EASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCc
Confidence 99988888765322211 1111 12366779999999988864
No 13
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.97 E-value=5e-30 Score=317.72 Aligned_cols=380 Identities=18% Similarity=0.243 Sum_probs=263.0
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc----eeeeEEEEe
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~i~ 628 (1010)
++.+.|.+..++.+++.+.. ....+++|+||||||||++++++|+.+..... ....++.++
T Consensus 181 l~~~igr~~ei~~~~~~L~~---------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCR---------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCcccCcHHHHHHHHHHHhc---------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 45677888887766653311 12356999999999999999999999843211 125678888
Q ss_pred ccccc--CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccC
Q 001808 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1010)
Q Consensus 629 ~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1010)
+..+. ..+.++.++.++.+|+++.++.+.||||||+|.+++.....++ .. ...+.|...+..
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---~~---~~~~~L~~~l~~---------- 309 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---SM---DASNLLKPALSS---------- 309 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc---cH---HHHHHHHHHHhC----------
Confidence 88876 4567889999999999998888999999999999854322111 11 122334333321
Q ss_pred CCcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh----cccccChHHHHhHhhhcCCCC
Q 001808 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGYD 777 (1010)
Q Consensus 707 ~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~----~~~~~~~~~l~~la~~t~g~s 777 (1010)
+.+.+|++|+..+ ..++++.| ||. .++++.|+.+++.+||+..... +++.++++.+..++..+..|-
T Consensus 310 -g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 310 -GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred -CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 3589999999743 46899999 997 7999999999999999976653 456789999999998887775
Q ss_pred hh-----hHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcccccccccccccc----CCCCCCCcCCCCc
Q 001808 778 AY-----DLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTS----AEGGRSGWDDVGG 848 (1010)
Q Consensus 778 ~~-----DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~----~~~~~~~~~dI~G 848 (1010)
+. -.-.+++.|+.....+ .. ......++.+|+..++...+......+.... ..........+.|
T Consensus 386 ~~r~~P~kai~lld~a~a~~~~~--~~-----~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~G 458 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASFRLR--PK-----AKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFG 458 (731)
T ss_pred ccccCCHHHHHHHHHhhhhhhcC--cc-----cccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeC
Confidence 43 3345566554322111 00 0122458889999998887543322111100 0011233566788
Q ss_pred hhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhh-----hhhcccH
Q 001808 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-----KYIGASE 923 (1010)
Q Consensus 849 l~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~-----~~ig~se 923 (1010)
++++.+.+...+..... .-..+-+|.+.+||+||+|||||++|+++|..++.+++.++++++.. +++|...
T Consensus 459 Q~~ai~~l~~~i~~~~~----g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~ 534 (731)
T TIGR02639 459 QDEAIDSLVSSIKRSRA----GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP 534 (731)
T ss_pred cHHHHHHHHHHHHHHhc----CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence 99988888877763210 01123356678999999999999999999999999999999988753 2333221
Q ss_pred -----HHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc---------cCcEEEEEeCCC
Q 001808 924 -----QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATRL 989 (1010)
Q Consensus 924 -----~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~---------~~~v~viatTn~ 989 (1010)
...+.+.+.++..+.+|+||||+|++. ..+.+.||+.||...- ..+++||+|||.
T Consensus 535 gyvg~~~~~~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 535 GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred CCcccchhhHHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 123345566677788999999999884 4589999999985321 347889999987
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-30 Score=266.24 Aligned_cols=169 Identities=34% Similarity=0.533 Sum_probs=160.7
Q ss_pred CCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhh
Q 001808 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1010)
Q Consensus 839 ~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ 918 (1010)
+.+.|.|+||++-.|+.+++.+++|+.+.+++.+.++.|+.|+|||||||||||+||+++|+.....||.+.++++..+|
T Consensus 150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky 229 (408)
T KOG0727|consen 150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY 229 (408)
T ss_pred CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcch---HHHHHHHHHHhcCccccCcEEEEEeCCC------
Q 001808 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATRL------ 989 (1010)
Q Consensus 919 ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~---~rv~~~lL~~ldg~e~~~~v~viatTn~------ 989 (1010)
.|+..+.+|++|+-|+.+.|+|+||||+|+++.+|=..++|.. .|++-+||++|||+....+|-||+||||
T Consensus 230 lgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldp 309 (408)
T KOG0727|consen 230 LGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDP 309 (408)
T ss_pred hccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCH
Confidence 9999999999999999999999999999999999977766654 4788899999999999999999999999
Q ss_pred ---CcCCcceEEEecCCCcce
Q 001808 990 ---EFFHYNVLLFCSFIIFLI 1007 (1010)
Q Consensus 990 ---r~gR~d~~l~~~~p~~~~ 1007 (1010)
||||+|+.|+||+||.-.
T Consensus 310 allrpgrldrkiefplpdrrq 330 (408)
T KOG0727|consen 310 ALLRPGRLDRKIEFPLPDRRQ 330 (408)
T ss_pred hhcCCccccccccCCCCchhh
Confidence 999999999999998643
No 15
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-28 Score=301.11 Aligned_cols=379 Identities=16% Similarity=0.210 Sum_probs=256.7
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc----ceeeeEEEEe
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVC 628 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i~ 628 (1010)
++.+.|.+..++++++.+..- ...++||+||||||||++++++|..+.... .....++.++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~---------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRR---------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhcc---------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 446788888888887755331 125689999999999999999998763221 0113344444
Q ss_pred ccccc--CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccC
Q 001808 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1010)
Q Consensus 629 ~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1010)
...+. ..+.++.++.++.++..+....+.||||||+|.+++.+.... .. ..+.+.|...+..
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~---g~---~d~~nlLkp~L~~---------- 313 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG---GQ---VDAANLIKPLLSS---------- 313 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC---cH---HHHHHHHHHHHhC----------
Confidence 44443 345678888899999988777889999999999985432111 11 2333444443322
Q ss_pred CCcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhh----hcccccChHHHHhHhhhcCCC-
Q 001808 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDGY- 776 (1010)
Q Consensus 707 ~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~----~~~~~~~~~~l~~la~~t~g~- 776 (1010)
+.+.+|++|+..+ ..+++|.| ||. .|.++.|+.+++.+||+.+.. .+++.++++.+..++..+..|
T Consensus 314 -g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 314 -GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred -CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 2589999999865 46899999 997 899999999999999997554 356678888888777665554
Q ss_pred ----ChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhccccccccccccccCC----CCCCCcCCCCc
Q 001808 777 ----DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGG 848 (1010)
Q Consensus 777 ----s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~----~~~~~~~dI~G 848 (1010)
.|.....+++.|+... +..+.. .....++.+|+.+.+...+......+...... .....-..+.|
T Consensus 390 ~~r~lPdKaidlldea~a~~--~~~~~~-----~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViG 462 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARA--RLMPVS-----KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFG 462 (758)
T ss_pred cCccChHHHHHHHHHHHHhh--ccCccc-----ccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeC
Confidence 4556677788776432 211100 11235778888888877665433222111100 01122345789
Q ss_pred hhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-----hhhhcccH
Q 001808 849 LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-----NKYIGASE 923 (1010)
Q Consensus 849 l~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~-----~~~ig~se 923 (1010)
++++.+.+.+.+.....- -..+-+|.+++||+||||||||++|+++|..++.+++.++++++. .+++|...
T Consensus 463 Q~~ai~~l~~~i~~~~~g----l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~ 538 (758)
T PRK11034 463 QDKAIEALTEAIKMSRAG----LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP 538 (758)
T ss_pred cHHHHHHHHHHHHHHhcc----ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCC
Confidence 999999999888643110 011235667899999999999999999999999999999998864 33444321
Q ss_pred H-----HHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc---------ccCcEEEEEeCC
Q 001808 924 Q-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATR 988 (1010)
Q Consensus 924 ~-----~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e---------~~~~v~viatTn 988 (1010)
. ....+....+..+.+|+||||||++. ..+.+.||+.||... ...+++||+|||
T Consensus 539 gyvg~~~~g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 539 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred CcccccccchHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 1 11234445566677999999999984 458999999998421 125789999999
No 16
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.5e-30 Score=284.24 Aligned_cols=166 Identities=30% Similarity=0.547 Sum_probs=158.7
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
.+.++|+-|.+++|+.|.|.++. ++.|..|.+++-+.+.|+||+||||||||.||+++|.+.+.+|+...++++-..|+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V 378 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV 378 (752)
T ss_pred ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence 47899999999999999999884 68888999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC---------C
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL---------E 990 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~---------r 990 (1010)
|...+.+|++|..|++..||||||||+|++.++|...+.-+.+..+||||.+|||+....+|+||+|||+ |
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 9999999999999999999999999999999999887766999999999999999999999999999999 9
Q ss_pred cCCcceEEEecCCCcc
Q 001808 991 FFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 991 ~gR~d~~l~~~~p~~~ 1006 (1010)
|||||++|.+|.||..
T Consensus 459 PGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVR 474 (752)
T ss_pred CCccceeEecCCCCcc
Confidence 9999999999999963
No 17
>PF09262 PEX-1N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015342 This domain adopts a double psi beta-barrel fold, similar in structure to the Cdc48 N-terminal domain. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; GO: 0005524 ATP binding, 0007031 peroxisome organization, 0005777 peroxisome; PDB: 1WLF_A.
Probab=99.96 E-value=2.3e-30 Score=225.65 Aligned_cols=77 Identities=48% Similarity=0.830 Sum_probs=62.2
Q ss_pred ceEEEeecCCcchhHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEeccCCCCC---eeEecCCCEEEEcc
Q 001808 94 ATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKP---VVQLVPGTEVAVAP 170 (1010)
Q Consensus 94 ~~~v~veP~t~dDwEi~e~~a~~~e~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~---~~~l~~~tev~vap 170 (1010)
|++|+|||+|+|||||||+||+|||++||+|+|||++||+||||++++++++|+|.++.|++. ||||+++|||+|||
T Consensus 1 A~~V~veP~T~dDWEIlEl~A~~lE~~lL~QiRvv~~~~~~~v~v~~~~~i~~~V~~i~p~~~~~~~~~L~~~TEv~VaP 80 (80)
T PF09262_consen 1 AKSVEVEPLTSDDWEILELHAEFLEDQLLSQIRVVFPGQVFPVWVSQNTVIKFKVVSIEPSSSAEGCARLSPDTEVIVAP 80 (80)
T ss_dssp -SEEEEEESSHHHHHHHHHS-SSHHHHHHHH--EE-TT-EEEEESSSS-EEEEEEEEEES--S---SEE--TT-EEEE--
T ss_pred CcEEEEEcCCccHHHHHHHhHHHHHHHHHHhheeecCCCEEEEEEcCCeEEEEEEEEccCCCCceeEEEeCCCcEEEECC
Confidence 789999999999999999999999999999999999999999999999999999999999985 99999999999998
No 18
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.4e-29 Score=276.40 Aligned_cols=227 Identities=22% Similarity=0.316 Sum_probs=193.0
Q ss_pred CccccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEE
Q 001808 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1010)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i 627 (1010)
..+..|+++.|+|++++++.+-+.-+.. +..|.++|...|+||||+||||||||.|||++|.+.+ .+|++.
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkd---P~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~------VPFF~~ 368 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKD---PTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG------VPFFYA 368 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcC---cHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC------CCeEec
Confidence 3456788999999988887665544444 4579999999999999999999999999999999987 788999
Q ss_pred ecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCC
Q 001808 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1010)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1010)
+.+.+...++|.-.++++++|+.|....||||||||+|++.+++.... ....++.+++|+..||.+....
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~----~~y~kqTlNQLLvEmDGF~qNe------ 438 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD----QHYAKQTLNQLLVEMDGFKQNE------ 438 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH----HHHHHHHHHHHHHHhcCcCcCC------
Confidence 999999988888899999999999999999999999999976554322 1245677888888899887654
Q ss_pred CcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHH
Q 001808 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1010)
Q Consensus 708 ~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1010)
.|++|++||.++.||++|.|||||+.+|.+|.||...|.+||+.++.+..+. .+-+...||+-|.||+++||.+++..
T Consensus 439 -GiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNq 516 (752)
T KOG0734|consen 439 -GIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQ 516 (752)
T ss_pred -ceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999864322 23347789999999999999999999
Q ss_pred HHHHHHHh
Q 001808 788 TVHAAVGR 795 (1010)
Q Consensus 788 A~~~a~~r 795 (1010)
|+..|...
T Consensus 517 AAlkAa~d 524 (752)
T KOG0734|consen 517 AALKAAVD 524 (752)
T ss_pred HHHHHHhc
Confidence 87766543
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-28 Score=265.98 Aligned_cols=261 Identities=21% Similarity=0.273 Sum_probs=210.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
.-..+++.|+..+++-+.+.+. +....+++|.....|- ++||++||||||||+||+|+|-+++ ..|+.|+.
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVv--lPi~mPe~F~GirrPW-kgvLm~GPPGTGKTlLAKAvATEc~------tTFFNVSs 278 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVV--LPIWMPEFFKGIRRPW-KGVLMVGPPGTGKTLLAKAVATECG------TTFFNVSS 278 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHh--hhhhhHHHHhhccccc-ceeeeeCCCCCcHHHHHHHHHHhhc------CeEEEech
Confidence 3446678888888887777653 3333456776654443 6799999999999999999999998 77899999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+.+..++.|+.++.++-+|..|+.++|++|||||||+|++.++ ++...+.++++...|+-.||........ ..-
T Consensus 279 stltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG---~s~EHEaSRRvKsELLvQmDG~~~t~e~---~k~ 352 (491)
T KOG0738|consen 279 STLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRG---GSSEHEASRRVKSELLVQMDGVQGTLEN---SKV 352 (491)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCC---CccchhHHHHHHHHHHHHhhcccccccc---cee
Confidence 9999999999999999999999999999999999999996543 3345667789999999999988754432 124
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
|+|+|+||-|++||.+|+| ||...|++|.|+.+.|..+++..++.... .++-.++.++..++||+++||.++|+.|.
T Consensus 353 VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~-~~~~~~~~lae~~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVEL-DDPVNLEDLAERSEGYSGADITNVCREAS 429 (491)
T ss_pred EEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccC-CCCccHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8999999999999999999 99999999999999999999988875322 34446899999999999999999999999
Q ss_pred HHHHHhhcccCC----c-c-cccccCcccccchhhhhhccccccc
Q 001808 790 HAAVGRYLHSDS----S-F-EKHIKPTLVRDDFSQAMHEFLPVAM 828 (1010)
Q Consensus 790 ~~a~~r~~~~~~----~-~-~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1010)
+.+++|...... . . .......++..||+.|+....|+..
T Consensus 430 m~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 430 MMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 999998652110 0 0 0111245889999999999888653
No 20
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4e-29 Score=254.47 Aligned_cols=167 Identities=36% Similarity=0.543 Sum_probs=157.7
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|+-+||++...+.+++.+++|.+||++|..+++..+.|+|||||||||||.+|+++|....+.||.++++++..+|+
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~i 222 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 222 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCc---chHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~---~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+..+-+|++|-.|+..+|+|+|.||||++...|..++.| .-.|..-+||.+|||+|...++-||+||||
T Consensus 223 gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a 302 (404)
T KOG0728|consen 223 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA 302 (404)
T ss_pred hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHh
Confidence 9999999999999999999999999999999999765444 335777889999999999999999999999
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||.|+.|+||.|+.+
T Consensus 303 llrpgridrkiefp~p~e~ 321 (404)
T KOG0728|consen 303 LLRPGRIDRKIEFPPPNEE 321 (404)
T ss_pred hcCCCcccccccCCCCCHH
Confidence 99999999999999864
No 21
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.7e-29 Score=259.85 Aligned_cols=165 Identities=32% Similarity=0.617 Sum_probs=155.8
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
.+.|+|+.|++.+|+.|++++.+|.++|++|... .+|-.+|||||||||||+-||+++|.+.+..|++++.++++++|+
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 4899999999999999999999999999999763 456679999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcccc-CcEEEEEeCCC-------Cc
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL-TGVFVFAATRL-------EF 991 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~-~~v~viatTn~-------r~ 991 (1010)
|++|.-++.+|+.|+..+|+||||||||+++++|+....+..+|+..+||-+|+|+-+. ++|+|++|||- -.
T Consensus 208 GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIR 287 (439)
T KOG0739|consen 208 GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIR 287 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998764 69999999998 55
Q ss_pred CCcceEEEecCCCc
Q 001808 992 FHYNVLLFCSFIIF 1005 (1010)
Q Consensus 992 gR~d~~l~~~~p~~ 1005 (1010)
+||++.||+|+|..
T Consensus 288 RRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 288 RRFEKRIYIPLPEA 301 (439)
T ss_pred HHhhcceeccCCcH
Confidence 79999999999974
No 22
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-28 Score=247.86 Aligned_cols=246 Identities=22% Similarity=0.344 Sum_probs=208.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
+++++-++|++.++++|++-+.. .-+.+++|..+|+..|.|+|||||||+|||.||+++|.... ..++.++.
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeL--PvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsg 214 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIEL--PVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSG 214 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhc--cccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEech
Confidence 56678889999999999997754 44567899999999999999999999999999999999865 78999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+.+..++.++-...++++|-.|+.++|+|+|+||+|++.+.+.+.....+++..+.+++ |++.+|.+.... +
T Consensus 215 selvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmle-llnqldgfeatk-------n 286 (404)
T KOG0728|consen 215 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLE-LLNQLDGFEATK-------N 286 (404)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHH-HHHhcccccccc-------c
Confidence 99999999999999999999999999999999999999887777666656655555555 445566665433 6
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+-+|.+||+.+-+||+|+|+||+++.++||+|+.+.|.+||+.+-++.++. ..-.+..+|....|.++++++.+|..|-
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 999999999999999999999999999999999999999999766654332 1224788999999999999999999998
Q ss_pred HHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
..|++.. +..+|.+||+-|+...
T Consensus 366 m~alrer-----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 366 MYALRER-----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred HHHHHHh-----------hccccHHHHHHHHHHH
Confidence 8887652 3568999999887764
No 23
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-29 Score=269.57 Aligned_cols=166 Identities=33% Similarity=0.541 Sum_probs=155.0
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|+||.|+.++|+.|.|.+.+|+.+|+.|... ++|=.++|++||||||||+|||++|.+|+..|+.|+.+.+.+||-
T Consensus 208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR 286 (491)
T KOG0738|consen 208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR 286 (491)
T ss_pred CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence 3899999999999999999999999999999874 567789999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCC-CCcchHHHHHHHHHHhcCcccc-Cc---EEEEEeCCC-----
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVL-TG---VFVFAATRL----- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~-~~~~~~rv~~~lL~~ldg~e~~-~~---v~viatTn~----- 989 (1010)
|++|+-+|-+|+.|+..+|++|||||||++..+||.+ +.+.++|+.++||.+|||+.+. ++ |+|+||||.
T Consensus 287 GeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiD 366 (491)
T KOG0738|consen 287 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDID 366 (491)
T ss_pred cchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchH
Confidence 9999999999999999999999999999999999864 5677899999999999998765 34 999999999
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
..+||.+.||+|+|+.+
T Consensus 367 EAlrRRlEKRIyIPLP~~~ 385 (491)
T KOG0738|consen 367 EALRRRLEKRIYIPLPDAE 385 (491)
T ss_pred HHHHHHHhhheeeeCCCHH
Confidence 67899999999999964
No 24
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-27 Score=284.18 Aligned_cols=386 Identities=17% Similarity=0.232 Sum_probs=265.2
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc----eeeeEEE
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVF 626 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~ 626 (1010)
..++-++|.+..+..+++-|..-. ..+-+|+|+||+|||.++..+|..+..... ....++.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~---------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRT---------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccC---------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 446678889988888777542211 144688999999999999999999854421 2355777
Q ss_pred Eeccccc--CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCc
Q 001808 627 VCCSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1010)
Q Consensus 627 i~~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1010)
+|...+. .++.|+.+.+++.++++.....+.||||||+|.+.+...... . ..... +.|.-.+.+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAa----NiLKPaLAR-------- 297 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAA----NLLKPALAR-------- 297 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchh----hhhHHHHhc--------
Confidence 7777776 467799999999999999988899999999999996443222 1 22222 223332222
Q ss_pred cCCCcEEEEEecCCccc-----cChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh----cccccChHHHHhHhhhcCC
Q 001808 705 CGIGPIAFVASAQSLEK-----IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1010)
Q Consensus 705 ~~~~~v~vIattn~~~~-----L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~----~~~~~~~~~l~~la~~t~g 775 (1010)
|.+.+|++|+..+. -|++|.| ||+ .|.+..|+.++-..||+.+-.+ |++.++++++...+..+..
T Consensus 298 ---GeL~~IGATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~R 371 (786)
T COG0542 298 ---GELRCIGATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDR 371 (786)
T ss_pred ---CCeEEEEeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHh
Confidence 35889998876442 4789999 998 8999999999999999865443 5677889988887777665
Q ss_pred CCh-----hhHHHHHHHHHHHHHHhhc-ccC--------------------------Ccc-c---------------ccc
Q 001808 776 YDA-----YDLEILVDRTVHAAVGRYL-HSD--------------------------SSF-E---------------KHI 807 (1010)
Q Consensus 776 ~s~-----~DL~~Lv~~A~~~a~~r~~-~~~--------------------------~~~-~---------------~~~ 807 (1010)
|.. .-.-.+++.|+........ +.. ... . ...
T Consensus 372 YI~dR~LPDKAIDLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 451 (786)
T COG0542 372 YIPDRFLPDKAIDLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELE 451 (786)
T ss_pred hcccCCCCchHHHHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHh
Confidence 543 3334555555432211100 000 000 0 000
Q ss_pred cCcccccchhhhhhccccccccccccccC----CCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEE
Q 001808 808 KPTLVRDDFSQAMHEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLL 883 (1010)
Q Consensus 808 ~~~lt~eDf~~Al~~~~P~~lr~v~~~~~----~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL 883 (1010)
. .++.+++...+...+............ ......-..+.|++++.+.+.+.+... ...-.-|-+|-+.+||
T Consensus 452 ~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra----RaGL~dp~rPigsFlF 526 (786)
T COG0542 452 A-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA----RAGLGDPNRPIGSFLF 526 (786)
T ss_pred h-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH----hcCCCCCCCCceEEEe
Confidence 0 134456666666655433221111100 011233457889999999998888743 1122235578889999
Q ss_pred eCCCCCChHHHHHHHHHHcC---CcEEEEecchhhhh------------hhcccHHHHHHHHHHHhcCCCeEEEEeCCCc
Q 001808 884 YGPPGCGKTHIVGAAAAACS---LRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1010)
Q Consensus 884 ~GppGtGKT~lAk~lA~~~g---~~~i~v~~~el~~~------------~ig~se~~l~~lf~~A~~~~p~VLfiDEid~ 948 (1010)
.||+|+|||.||++||..+. ..+++++|||+..+ |+|..+ -..+.+..+..+.||++||||++
T Consensus 527 ~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 527 LGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred eCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh
Confidence 99999999999999999995 78999999999764 666655 45678888888999999999999
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhcCcccc---------CcEEEEEeCCC
Q 001808 949 IAPKRGHDNTGVTDRVVNQFLTELDGVEVL---------TGVFVFAATRL 989 (1010)
Q Consensus 949 l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~---------~~v~viatTn~ 989 (1010)
. +..|+|.||+.||...-. .+++||+|||.
T Consensus 605 A-----------HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 605 A-----------HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred c-----------CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 8 456999999999954322 47999999998
No 25
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-28 Score=250.35 Aligned_cols=167 Identities=31% Similarity=0.509 Sum_probs=156.6
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
.+.|.|+||-.+..+.+++.+++|+-+|+.|.++++.|+.|+|||||||||||.+|+++|+..+.-||.+-++++..+|+
T Consensus 173 dvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyv 252 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYV 252 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCC---CCcchHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~---~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+..+.+|++|+.|+..+.||+||||+|++.+.|=.+ .+..-.|..-+|+++|||+..++++-|++||||
T Consensus 253 gegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpa 332 (435)
T KOG0729|consen 253 GEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPA 332 (435)
T ss_pred hhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHh
Confidence 9999999999999999999999999999999988433 222345777788999999999999999999999
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||+|+.++|.+|+.+
T Consensus 333 llrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 333 LLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred hcCCcccccceeccCCccc
Confidence 99999999999999975
No 26
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-27 Score=276.59 Aligned_cols=261 Identities=23% Similarity=0.316 Sum_probs=212.0
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
+...+++||+++.+.+|.+.+..-+. .+.+|+. ++.+..|||||||||||||.+|+|+|-++. ..|..+..
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~--hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKG 738 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLK--HPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKG 738 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCccc--Chhhhhc-cccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecC
Confidence 45678899999999999998865332 2334443 466667899999999999999999999998 78888999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
-++.+.+.|+.++.++++|+.|+...|||||+||+|++++.|+....+ .....++..+|+..+|.++.... .+
T Consensus 739 PELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS--GGVMDRVVSQLLAELDgls~~~s-----~~ 811 (953)
T KOG0736|consen 739 PELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDS--GGVMDRVVSQLLAELDGLSDSSS-----QD 811 (953)
T ss_pred HHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCc--cccHHHHHHHHHHHhhcccCCCC-----Cc
Confidence 999999999999999999999999999999999999999876654433 34557889999999999875321 26
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCc-HHHHHHHHHHHhhhcccccChHHHHhHhhhc-CCCChhhHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPA-ASERKAILEHEIQRRSLECSDEILLDVASKC-DGYDAYDLEILVDR 787 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~-~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t-~g~s~~DL~~Lv~~ 787 (1010)
|+||++||+|+.|||+|+|+|||++.+++++++ .+.+..||+...++..++- +-.+..+|+.| ..|+++|+-.+|..
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLde-dVdL~eiAk~cp~~~TGADlYsLCSd 890 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDE-DVDLVEIAKKCPPNMTGADLYSLCSD 890 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCC-CcCHHHHHhhCCcCCchhHHHHHHHH
Confidence 999999999999999999999999999999885 5678899998877654432 22377788887 57999999999999
Q ss_pred HHHHHHHhhcccCCc------ccccccCcccccchhhhhhcccccc
Q 001808 788 TVHAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVA 827 (1010)
Q Consensus 788 A~~~a~~r~~~~~~~------~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1010)
|...|+.|....... ........++++||.++++++.|+.
T Consensus 891 A~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 891 AMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 999999887532111 1122335688999999999999964
No 27
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6e-28 Score=291.82 Aligned_cols=412 Identities=21% Similarity=0.320 Sum_probs=297.5
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+.+++|++..++++++.+.. .-.+++.|..+++.||+|+|++||||||||..|+++|..+......+. +..-..
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~--PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kis-ffmrkg 337 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLL--PLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKIS-FFMRKG 337 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHh--HhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccc-hhhhcC
Confidence 45688999999999999996643 333677999999999999999999999999999999999865544322 333455
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
.+..++++++.+..++.+|++|..++|+|+|+||||-|++.++... . .....+...|+.+|+.+..+ |+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-E---qih~SIvSTLLaLmdGldsR-------gq 406 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-E---QIHASIVSTLLALMDGLDSR-------GQ 406 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-H---HhhhhHHHHHHHhccCCCCC-------Cc
Confidence 6677889999999999999999999999999999999987654322 1 12236667788888887654 46
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
|++|++||+++.++++++|+|||++.++++.|+.+.|.+|+...-.+..-.+....+..+|..+.||.++||+.+|..|+
T Consensus 407 VvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 407 VVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred eEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988777777788888999999999999999999999999
Q ss_pred HHHHHhhccc-----CCcccccccCcccccchhhhhhccccccccccc-cccCCCCCCCcCCCCchhhHHHHHHHHh---
Q 001808 790 HAAVGRYLHS-----DSSFEKHIKPTLVRDDFSQAMHEFLPVAMRDIT-KTSAEGGRSGWDDVGGLTDIQNAIKEMI--- 860 (1010)
Q Consensus 790 ~~a~~r~~~~-----~~~~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~-~~~~~~~~~~~~dI~Gl~~vk~~L~e~i--- 860 (1010)
..++.+-.+. ...........+...||..|+...+|+.-|... ...+-. ....-+.+...+-..++..+
T Consensus 487 l~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~--~~~~~ll~~~~~~~~iq~~~~va 564 (1080)
T KOG0732|consen 487 LIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLS--TYLKPLLPFQDALEDIQGLMDVA 564 (1080)
T ss_pred hhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCC--cceecccchHHHHHHhhcchhHH
Confidence 9888775422 111112222347788999999999998776432 222210 00111111112111111111
Q ss_pred ----------hc-cCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc-CCcEEEEecchhhhhh-hcccHHHHH
Q 001808 861 ----------EL-PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-SLRFISVKGPELLNKY-IGASEQAVR 927 (1010)
Q Consensus 861 ----------~~-~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~-g~~~i~v~~~el~~~~-ig~se~~l~ 927 (1010)
.+ +..+...| ..++--+..+++.|..|.|-+.+..++-+.+ +.+......+.++..- .+..+..+.
T Consensus 565 ~~~~k~~e~~~~~v~~~e~~~-~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv 643 (1080)
T KOG0732|consen 565 SSMAKIEEHLKLLVRSFESNF-AIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIV 643 (1080)
T ss_pred hhhhhHHHHhHHHHHhhhccc-chhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHH
Confidence 11 11111100 1122223457888999999999999887766 7777777777776543 455677899
Q ss_pred HHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEE
Q 001808 928 DIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFA 985 (1010)
Q Consensus 928 ~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~via 985 (1010)
.+|.+|+...|||+||=.+|.-+-. ....+...|+..++.......+..+-
T Consensus 644 ~i~~eaR~~~psi~~ip~~d~w~~~-------~p~s~~~~~~~~l~~~~~~t~i~e~~ 694 (1080)
T KOG0732|consen 644 HIFMEARKTTPSIVFIPNVDEWARV-------IPVSFLEEFLSSLDEKALSTPILELH 694 (1080)
T ss_pred HHHHHHhccCCceeeccchhhhhhc-------Ccchhhhcchhcchhhhhccchhhhc
Confidence 9999999999999999888765422 23345555666665444444444333
No 28
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.3e-28 Score=247.05 Aligned_cols=245 Identities=20% Similarity=0.336 Sum_probs=207.2
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+++++|++++++++++.+ .++......|.++++.||.|+|+|||||||||.+||+.|.... +.|..+..
T Consensus 167 tE~YsDiGGldkQIqELvEAi--VLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~------aTFLKLAg 238 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAI--VLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN------ATFLKLAG 238 (424)
T ss_pred cccccccccHHHHHHHHHHHh--ccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc------chHHHhcc
Confidence 456889999999999999976 4555567789999999999999999999999999999998876 45555666
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+...+.|+-.+.+++.|..|....|+|+||||+|.+..++.+.+.+++.+..+.+++ |++.+|.+.+.. .
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLE-LLNQLDGFss~~-------~ 310 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLE-LLNQLDGFSSDD-------R 310 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHH-HHHhhcCCCCcc-------c
Confidence 77777788888999999999999999999999999999988888887776666655555 445667766543 4
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChH-HHHhHhhhcCCCChhhHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~-~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
+-+|++||+.+-++|+|+|+||.++.|+||.|+.+.|..|++.+.++ +.++++ .++.+|+.|++|+++..+.+|-.|
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRK--Mnv~~DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRK--MNVSDDVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhh--cCCCCCCCHHHHhhcccccCchhheeeehhh
Confidence 99999999999999999999999999999999999999999976655 444444 599999999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
-+.|+++ +...++.+||..++.+.
T Consensus 389 GMiALRr-----------~atev~heDfmegI~eV 412 (424)
T KOG0652|consen 389 GMIALRR-----------GATEVTHEDFMEGILEV 412 (424)
T ss_pred hHHHHhc-----------ccccccHHHHHHHHHHH
Confidence 9888877 33568889998876553
No 29
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-27 Score=242.91 Aligned_cols=248 Identities=20% Similarity=0.328 Sum_probs=208.1
Q ss_pred CccccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEE
Q 001808 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1010)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i 627 (1010)
..+..+.+++|++.++++|.+.+...+ ....++...|+.||+|+|+|||||||||+|++++|+... +.|+.+
T Consensus 149 kpdvsy~diggld~qkqeireavelpl--t~~~ly~qigidpprgvllygppg~gktml~kava~~t~------a~firv 220 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPL--THADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT------AAFIRV 220 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccc--hHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc------hheeee
Confidence 345668899999999999999876543 345789999999999999999999999999999999866 789999
Q ss_pred ecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCC
Q 001808 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1010)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1010)
..+.+..++.|+-..+++++|..|..+.|+|+||||+|.+..++-+.... .....++++-.|++.||.+....
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtg-adrevqril~ellnqmdgfdq~~------ 293 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTG-ADREVQRILIELLNQMDGFDQTT------ 293 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhcccccc-ccHHHHHHHHHHHHhccCcCccc------
Confidence 99999999999999999999999999999999999999999776655433 33344455555667777766543
Q ss_pred CcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHH
Q 001808 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1010)
Q Consensus 708 ~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1010)
++-+|.+||+.+.++|+|+|+||.++.|+||.|+..++.-++..+..+..+. ++..++.+..+.+..+++|+..+|+.
T Consensus 294 -nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 294 -NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred -ceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHH
Confidence 6999999999999999999999999999999999999999999887765443 23357888888899999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
|-+.|++. .+-.+...||+++....
T Consensus 372 agm~avr~-----------nryvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 372 AGMLAVRE-----------NRYVVLQKDFEKAYKTV 396 (408)
T ss_pred HhHHHHHh-----------cceeeeHHHHHHHHHhh
Confidence 98888765 23457788999887664
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.95 E-value=3.7e-27 Score=275.49 Aligned_cols=244 Identities=21% Similarity=0.290 Sum_probs=200.8
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+++++|++..++.+.++...+. .....+++++|+|+|||||||||||++|+++|++++ ..++.+++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~-----~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~------~~~~~l~~ 292 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS-----KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ------LPLLRLDV 292 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh-----HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEEEh
Confidence 3457889999888877776543321 124567889999999999999999999999999988 77899999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+.+.+.+.++.+..++++|..+...+|+||||||+|.+++.+.. ........+++..|...++... .+
T Consensus 293 ~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~---~~d~~~~~rvl~~lL~~l~~~~---------~~ 360 (489)
T CHL00195 293 GKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSES---KGDSGTTNRVLATFITWLSEKK---------SP 360 (489)
T ss_pred HHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccC---CCCchHHHHHHHHHHHHHhcCC---------Cc
Confidence 99999999999999999999999999999999999999853221 1122334566666767666421 25
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccc-cChHHHHhHhhhcCCCChhhHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~-~~~~~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
+++|+|||+++.+|+++.|+|||+..++++.|+.++|.+||+.++.+.... ..+..+..++..|+||+++||+.+|..|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999875433 3455689999999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhccccccc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~l 828 (1010)
.+.+..+ ...++.+||..|+..+.|.+.
T Consensus 441 ~~~A~~~------------~~~lt~~dl~~a~~~~~Pls~ 468 (489)
T CHL00195 441 MYIAFYE------------KREFTTDDILLALKQFIPLAQ 468 (489)
T ss_pred HHHHHHc------------CCCcCHHHHHHHHHhcCCCcc
Confidence 8877643 135899999999999999753
No 31
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.95 E-value=3.4e-27 Score=270.52 Aligned_cols=249 Identities=21% Similarity=0.329 Sum_probs=202.9
Q ss_pred ccccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEe
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~ 628 (1010)
.+..+.+++|++.+++++.+.+...+. .+.+|...++.+|+++||+||||||||++++++|++++ ..++.+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~--~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~------~~fi~i~ 211 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLT--CPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT------ATFIRVV 211 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEe
Confidence 345688999999999999998865433 35678899999999999999999999999999999987 6677888
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCC
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++.+...+.+.....+.++|..+....|+||||||+|.+++.+.+.....+ ......+..|...++.+... .
T Consensus 212 ~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d-~~~~r~l~~LL~~ld~~~~~-------~ 283 (398)
T PTZ00454 212 GSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGAD-REVQRILLELLNQMDGFDQT-------T 283 (398)
T ss_pred hHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCcc-HHHHHHHHHHHHHhhccCCC-------C
Confidence 888887778888888999999999999999999999999865543322222 22334444455555554332 2
Q ss_pred cEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHH
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
++.+|++||+++.+|+++.|+|||+..++++.|+.++|..|++.++.+.++. .+..+..++..++||+++||+.+|+.|
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEA 362 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999888765543 234588899999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhcccc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
.+.|+++ ....++.+||.+|++....
T Consensus 363 ~~~A~r~-----------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 363 GMQAVRK-----------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 9988866 2356899999999887543
No 32
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-27 Score=248.22 Aligned_cols=166 Identities=33% Similarity=0.527 Sum_probs=156.2
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|.|+||++...+.+++.+++|+.||+.+..+++.|+.|++|||+||||||.||+++|+.....|+++-+++++.+|.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkyl 260 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL 260 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcch---HHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT---DRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~---~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+..+-+|++|+-|...+|+|+||||||++..+|=..++|-. .|..-+||++|||++.++.|-||+|||+
T Consensus 261 GdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPa 340 (440)
T KOG0726|consen 261 GDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPA 340 (440)
T ss_pred ccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHh
Confidence 999999999999999999999999999999999965554433 3566688999999999999999999999
Q ss_pred --CcCCcceEEEecCCCc
Q 001808 990 --EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~ 1005 (1010)
||||.|+.|.|++||.
T Consensus 341 LiRPGrIDrKIef~~pDe 358 (440)
T KOG0726|consen 341 LIRPGRIDRKIEFPLPDE 358 (440)
T ss_pred hcCCCccccccccCCCch
Confidence 9999999999999985
No 33
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.95 E-value=3.8e-26 Score=284.58 Aligned_cols=385 Identities=16% Similarity=0.216 Sum_probs=242.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc----ceeeeEEEE
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFV 627 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i 627 (1010)
.++.+.|.+..+..+++.+ .. ....+++|+||||||||++++.+|+.+.... .....++.+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l---~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDIL---LR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCcccCCHHHHHHHHHHH---hc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3456777877766655533 11 1124689999999999999999999985331 112456677
Q ss_pred eccccc--CCchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCc
Q 001808 628 CCSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1010)
Q Consensus 628 ~~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1010)
+...+. ..+.++.+..++.+|.++.. ..+.||||||+|.+.+.+... +.+ ...+.|...+..
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~-~~~------d~~n~Lkp~l~~-------- 314 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA-GQG------DAANLLKPALAR-------- 314 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc-ccc------cHHHHhhHHhhC--------
Confidence 777665 35678888999999998864 467899999999998543221 111 122233333321
Q ss_pred cCCCcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh----cccccChHHHHhHhhhcCC
Q 001808 705 CGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDG 775 (1010)
Q Consensus 705 ~~~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~----~~~~~~~~~l~~la~~t~g 775 (1010)
|.+.+|++|+..+ .++++|.| ||. .|.+++|+.+++.+||+.+... +++.++++.+..++..+.+
T Consensus 315 ---G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~r 388 (852)
T TIGR03345 315 ---GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHR 388 (852)
T ss_pred ---CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccc
Confidence 3589999998743 37999999 997 8999999999999998765543 4567899999999999888
Q ss_pred CChh-----hHHHHHHHHHHHHHHhhc-----------------------ccCCcc--ccc-------------------
Q 001808 776 YDAY-----DLEILVDRTVHAAVGRYL-----------------------HSDSSF--EKH------------------- 806 (1010)
Q Consensus 776 ~s~~-----DL~~Lv~~A~~~a~~r~~-----------------------~~~~~~--~~~------------------- 806 (1010)
|.+. -.-.+++.|+........ ...... ...
T Consensus 389 yi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (852)
T TIGR03345 389 YIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAA 468 (852)
T ss_pred ccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7542 233444444321110000 000000 000
Q ss_pred --------------------------------------------------------ccCcccccchhhhhhccccccccc
Q 001808 807 --------------------------------------------------------IKPTLVRDDFSQAMHEFLPVAMRD 830 (1010)
Q Consensus 807 --------------------------------------------------------~~~~lt~eDf~~Al~~~~P~~lr~ 830 (1010)
....++.+|+...+...+......
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~ 548 (852)
T TIGR03345 469 LEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGR 548 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchh
Confidence 000122223333332222211111
Q ss_pred cccccCC----CCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---C
Q 001808 831 ITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---S 903 (1010)
Q Consensus 831 v~~~~~~----~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g 903 (1010)
+...... .....-..+.|++++.+.+.+.+..... .-..|-+|.+.+||.||+|||||.+|+++|..+ +
T Consensus 549 ~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~----gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~ 624 (852)
T TIGR03345 549 MVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARA----GLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE 624 (852)
T ss_pred hchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhc----CCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 1000000 0011234577888888888777754211 011234566679999999999999999999998 4
Q ss_pred CcEEEEecchhhhh------------hhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHH
Q 001808 904 LRFISVKGPELLNK------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1010)
Q Consensus 904 ~~~i~v~~~el~~~------------~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ 971 (1010)
..++.++++++... |+|..+. ..+....+..+++||+|||||++ +..+.+.|++.
T Consensus 625 ~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ 691 (852)
T TIGR03345 625 QNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQV 691 (852)
T ss_pred cceEEEeHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHH
Confidence 57899999887532 4554332 23556667788899999999987 45689999999
Q ss_pred hcCcc---------ccCcEEEEEeCCC
Q 001808 972 LDGVE---------VLTGVFVFAATRL 989 (1010)
Q Consensus 972 ldg~e---------~~~~v~viatTn~ 989 (1010)
||... ...+++||+|||.
T Consensus 692 ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 692 FDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred hhcceeecCCCcEEeccccEEEEeCCC
Confidence 98432 1257999999998
No 34
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-27 Score=254.99 Aligned_cols=232 Identities=22% Similarity=0.305 Sum_probs=199.1
Q ss_pred CccccccccccchhhHHHHHHHHHHhcCCCccchhccc-CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEE
Q 001808 548 GFDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTY-HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF 626 (1010)
Q Consensus 548 ~~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~-~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~ 626 (1010)
.+..++.+++|++..++++.+.+.. ....+.+|... -+.++.||||+||||||||++|+++|++.+ +.++.
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~Vil--Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag------a~fIn 157 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVIL--PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG------ANFIN 157 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhh--cccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC------CCcce
Confidence 4567788999999999999886644 33455566433 345678999999999999999999999988 88999
Q ss_pred EecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccC
Q 001808 627 VCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1010)
Q Consensus 627 i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1010)
++.+.+..+++++.++.+..+|..|..-+|+|+||||+|++++.+ ++.+.+....+..+|+..+|.+..+.+.
T Consensus 158 v~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R----~s~dHEa~a~mK~eFM~~WDGl~s~~~~--- 230 (386)
T KOG0737|consen 158 VSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR----RSTDHEATAMMKNEFMALWDGLSSKDSE--- 230 (386)
T ss_pred eeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc----ccchHHHHHHHHHHHHHHhccccCCCCc---
Confidence 999999999999999999999999999999999999999999655 2445667778889999999988765542
Q ss_pred CCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHH
Q 001808 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1010)
Q Consensus 707 ~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~ 786 (1010)
.|+|+|+||++.+++.++.| |++..++++.|+..+|.+||+-+++...+. ++-++..+|.+|+||++.||+.+|+
T Consensus 231 --rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 231 --RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred --eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHH
Confidence 39999999999999999999 999999999999999999999998875554 4446899999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 001808 787 RTVHAAVGRYLHS 799 (1010)
Q Consensus 787 ~A~~~a~~r~~~~ 799 (1010)
.|.+..++.++..
T Consensus 306 ~Aa~~~ire~~~~ 318 (386)
T KOG0737|consen 306 LAALRPIRELLVS 318 (386)
T ss_pred HHhHhHHHHHHHh
Confidence 9999988877643
No 35
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.2e-27 Score=276.37 Aligned_cols=249 Identities=21% Similarity=0.302 Sum_probs=211.9
Q ss_pred ccccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEe
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~ 628 (1010)
....|.++.|++++.++|.+.+.-+-+| +.|.++|...|+|+||+||||||||.||+|+|.+.+ .+|+.++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP---~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg------VPF~svS 376 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNP---EQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPFFSVS 376 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCH---HHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC------Cceeeec
Confidence 3456889999999999998887767664 489999999999999999999999999999999987 8899999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCC
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
.+++.....+.-..+++++|..|+.+.|+|+||||+|.+...+............+..+++|+..||.+....
T Consensus 377 GSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~------- 449 (774)
T KOG0731|consen 377 GSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK------- 449 (774)
T ss_pred hHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC-------
Confidence 9998877666667889999999999999999999999998766421122233445677788888899876542
Q ss_pred cEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHH
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
.|+++++||+++-+|++|+|+|||+++++++.|+..+|.+|++.+++...+..++..+..+|..|+||+++||.++|..|
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~nea 529 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEA 529 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHH
Confidence 59999999999999999999999999999999999999999999998877765666677799999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhccc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1010)
...+.++ ....++..||..|++..+
T Consensus 530 a~~a~r~-----------~~~~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 530 ALLAARK-----------GLREIGTKDLEYAIERVI 554 (774)
T ss_pred HHHHHHh-----------ccCccchhhHHHHHHHHh
Confidence 8888776 335688899999988543
No 36
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.9e-27 Score=245.60 Aligned_cols=226 Identities=22% Similarity=0.326 Sum_probs=192.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
+...+.+.|++.+++.+++.+ ++.-..+++|..-..| =+++|||||||||||.||+++|-+.+ ..|+.++.
T Consensus 129 NVkWsDVAGLE~AKeALKEAV--ILPIKFPqlFtGkR~P-wrgiLLyGPPGTGKSYLAKAVATEAn------STFFSvSS 199 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAV--ILPIKFPQLFTGKRKP-WRGILLYGPPGTGKSYLAKAVATEAN------STFFSVSS 199 (439)
T ss_pred CCchhhhccchhHHHHHHhhe--eecccchhhhcCCCCc-ceeEEEeCCCCCcHHHHHHHHHhhcC------CceEEeeh
Confidence 344567788999988888855 5555667777765444 36799999999999999999999977 66888999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+++..++.++.++.++.+|+.|+.+.|+||||||+|.+++.+.+.+ ++.++++...|+-.|........ .
T Consensus 200 SDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE----seasRRIKTEfLVQMqGVG~d~~------g 269 (439)
T KOG0739|consen 200 SDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE----SEASRRIKTEFLVQMQGVGNDND------G 269 (439)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc----hHHHHHHHHHHHHhhhccccCCC------c
Confidence 9999999999999999999999999999999999999997665543 34556777667777777665433 5
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
++++++||-++.|+.+++| ||+..|++|.|+...|..+++..+..-...+++..+..++++|+||++.|+..+++.|+
T Consensus 270 vLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred eEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 9999999999999999999 99999999999999999999988888777789999999999999999999999999888
Q ss_pred HHHHHhh
Q 001808 790 HAAVGRY 796 (1010)
Q Consensus 790 ~~a~~r~ 796 (1010)
++-+++.
T Consensus 348 mePvRkv 354 (439)
T KOG0739|consen 348 MEPVRKV 354 (439)
T ss_pred hhhHHHh
Confidence 8777654
No 37
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.94 E-value=1.6e-25 Score=280.60 Aligned_cols=384 Identities=19% Similarity=0.249 Sum_probs=256.0
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc----ceeeeEEEEe
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVC 628 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i~ 628 (1010)
+..+.|.+..++.+++.+.. ....+++|+||||||||++++.+|..+.... .....++.++
T Consensus 178 ~~~~igr~~ei~~~~~~L~r---------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGR---------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcc---------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 45677888888887775421 1235799999999999999999999885321 1125677888
Q ss_pred ccccc--CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccC
Q 001808 629 CSRLS--LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1010)
Q Consensus 629 ~s~l~--~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1010)
...+. ..+.++.++.++.+++++....+.||||||+|.+++.... ++. . .+.+.|...+..
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~-~g~--~----~~a~lLkp~l~r---------- 305 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA-EGA--I----DAANILKPALAR---------- 305 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC-CCc--c----cHHHHhHHHHhC----------
Confidence 87765 3567888999999999998778899999999999854322 111 1 223333333321
Q ss_pred CCcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhh----hcccccChHHHHhHhhhcCCCC
Q 001808 707 IGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ----RRSLECSDEILLDVASKCDGYD 777 (1010)
Q Consensus 707 ~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~----~~~~~~~~~~l~~la~~t~g~s 777 (1010)
+.+.+|++|+..+ ..+++|.+ ||. .+.++.|+.++..+|++.... .+++.++++.+..++..+.+|.
T Consensus 306 -g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 306 -GELQCIGATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred -CCcEEEEeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 3589999998754 36789998 997 689999999999999886543 2455688999998888888775
Q ss_pred h-----hhHHHHHHHHHHHHHHhhc--cc---------------------CCc------------------------c--
Q 001808 778 A-----YDLEILVDRTVHAAVGRYL--HS---------------------DSS------------------------F-- 803 (1010)
Q Consensus 778 ~-----~DL~~Lv~~A~~~a~~r~~--~~---------------------~~~------------------------~-- 803 (1010)
+ ...-.+++.|+........ +. ... .
T Consensus 382 ~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (821)
T CHL00095 382 ADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKT 461 (821)
T ss_pred ccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 2334455555432211000 00 000 0
Q ss_pred ---cccccCcccccchhhhhhccccccccccccccCC----CCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCC
Q 001808 804 ---EKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAE----GGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR 876 (1010)
Q Consensus 804 ---~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~----~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr 876 (1010)
.......++.+|+.+.+...+......+...... .....-..+.|++.+.+.+...+..... .-.-+-+
T Consensus 462 ~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~----gl~~~~~ 537 (821)
T CHL00095 462 EEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARV----GLKNPNR 537 (821)
T ss_pred hhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhh----cccCCCC
Confidence 0001134666777777766654433222111100 0012235688999999999887763211 0012345
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhh-----h-------hhcccHHHHHHHHHHHhcCCCeEE
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-----K-------YIGASEQAVRDIFSKATAAAPCLL 941 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~-----~-------~ig~se~~l~~lf~~A~~~~p~VL 941 (1010)
|...+||+||+|||||++|+++|..+ +.+++.++++++.. + |+|..+ .+.+....+..+.+|+
T Consensus 538 p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~Vv 615 (821)
T CHL00095 538 PIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVV 615 (821)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEE
Confidence 55679999999999999999999987 46799999988742 2 333322 2356667777778999
Q ss_pred EEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc---------ccCcEEEEEeCCC
Q 001808 942 FFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------VLTGVFVFAATRL 989 (1010)
Q Consensus 942 fiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e---------~~~~v~viatTn~ 989 (1010)
+|||+|++ +..+.+.||+.||... ...+++||+|||.
T Consensus 616 llDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 616 LFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred EECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 99999998 4568999999998432 1368999999997
No 38
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.2e-27 Score=277.52 Aligned_cols=166 Identities=31% Similarity=0.535 Sum_probs=156.0
Q ss_pred CCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhh
Q 001808 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1010)
Q Consensus 839 ~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ 918 (1010)
..+.+.|+.|.+++|+.|.|.+. .++.|+.|.+.+.+.+.|+||+||||||||.||||+|.+.|.||+.++++|+...+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 35889999999999999999998 56899999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCC----CCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC-----
Q 001808 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG----HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL----- 989 (1010)
Q Consensus 919 ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~----~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~----- 989 (1010)
+|.....+|++|..|+...|||+|+||||++...|+ ++.....+..+||||.+|||.+..++|+|+|+|||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 23444567799999999999999999999999999
Q ss_pred ----CcCCcceEEEecCCCc
Q 001808 990 ----EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 990 ----r~gR~d~~l~~~~p~~ 1005 (1010)
||||||+.+++++|+.
T Consensus 465 ~allrpGRfdr~i~i~~p~~ 484 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDV 484 (774)
T ss_pred HHhcCCCccccceeccCCch
Confidence 9999999999999985
No 39
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-27 Score=246.69 Aligned_cols=245 Identities=20% Similarity=0.324 Sum_probs=201.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
..++.+++|++.++++|++.+... -..+++|...|+.||.||+|||+||||||.||+++|+... +.|..+-.
T Consensus 181 ~Ety~diGGle~QiQEiKEsvELP--LthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS------ATFlRvvG 252 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKESVELP--LTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS------ATFLRVVG 252 (440)
T ss_pred hhhhcccccHHHHHHHHHHhhcCC--CCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc------hhhhhhhh
Confidence 345789999999999999977553 3467899999999999999999999999999999999876 77888889
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+++..++.++-.+.++++|+.|..++|+|+||||||.+..++-+.......+..+.++ .|++.+|.+.. ++.
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmL-ELLNQldGFds-------rgD 324 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTML-ELLNQLDGFDS-------RGD 324 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHH-HHHHhccCccc-------cCC
Confidence 9999999999999999999999999999999999999987666544333333333333 34455555544 346
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChH-HHHhHhhhcCCCChhhHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~-~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
|-+|.+||..+.+||+|.|+||+++.|+|+.||...+..||..+..+ +.+.++ .++.+...-+.++++|++.+|..|
T Consensus 325 vKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kddlSGAdIkAictEa 402 (440)
T KOG0726|consen 325 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDDLSGADIKAICTEA 402 (440)
T ss_pred eEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999865544 333333 477788888899999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
-..|++.. +..++.+||.+|.+..
T Consensus 403 GllAlRer-----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 403 GLLALRER-----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred hHHHHHHH-----------HhhccHHHHHHHHHHH
Confidence 88887763 2468999999998764
No 40
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.94 E-value=2.8e-26 Score=264.34 Aligned_cols=250 Identities=23% Similarity=0.348 Sum_probs=201.6
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+.+++|++.+++++.+.+...+. .+..|...++.+|.++|||||||||||++|+++|++++ ..++.++|
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~------~~~i~v~~ 198 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLK--KPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 198 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhh--CHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC------CCEEEeeh
Confidence 45567899999999999998865332 45678889999999999999999999999999999987 66888999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+.+...+.+...+.+..+|..+..+.|+||||||+|.+++.+.+....... .....+..|...++.+... ++
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~-~~~~~l~~lL~~ld~~~~~-------~~ 270 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDR-EVQRTLMQLLAEMDGFDPR-------GN 270 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccH-HHHHHHHHHHHhccccCCC-------CC
Confidence 999888888888889999999999999999999999998654433222222 2223333344444433221 25
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+.+|+|||.++.+++++.|+|||+..+++++|+.++|.+||+.++.+..+. .+..+..++..|+||+++|++.+|++|.
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~ 349 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAG 349 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888754433 2245888999999999999999999999
Q ss_pred HHHHHhhcccCCcccccccCcccccchhhhhhcccccc
Q 001808 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1010)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1010)
..++++ ....++.+||.+|+....+..
T Consensus 350 ~~a~~~-----------~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 350 MFAIRD-----------DRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHc-----------CCCCcCHHHHHHHHHHHhccc
Confidence 888765 224689999999999876654
No 41
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.2e-27 Score=239.76 Aligned_cols=167 Identities=32% Similarity=0.480 Sum_probs=155.9
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|+||||++...+.+.+.+.+|..|++.|.+++++|+.|+|+|||||||||.+|++.|...+..|..+-++.+...|+
T Consensus 167 tE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfI 246 (424)
T KOG0652|consen 167 TEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFI 246 (424)
T ss_pred cccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCC-C--cchHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN-T--GVTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~-~--~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+..+-+|+.|.-|+..+|+|+||||+|++..+|-.+. . ..-.|..-+||.+|||+...+.|-|||||||
T Consensus 247 GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPA 326 (424)
T KOG0652|consen 247 GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPA 326 (424)
T ss_pred cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHH
Confidence 99999999999999999999999999999999985432 2 2234677889999999999999999999999
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
|.||+|+.|+||.|+.+
T Consensus 327 LlRSGRLDRKIEfP~Pne~ 345 (424)
T KOG0652|consen 327 LLRSGRLDRKIEFPHPNEE 345 (424)
T ss_pred HhhcccccccccCCCCChH
Confidence 99999999999999864
No 42
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.94 E-value=2.6e-26 Score=235.70 Aligned_cols=238 Identities=23% Similarity=0.326 Sum_probs=192.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
+-++++++|.+.++....=-+.-+-+|. .++-=.|++||+|||||||||++|+++|++.. ..++.+..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yLenPe------~Fg~WAPknVLFyGppGTGKTm~Akalane~k------vp~l~vka 184 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYLENPE------RFGDWAPKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKA 184 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHhhChH------HhcccCcceeEEECCCCccHHHHHHHHhcccC------CceEEech
Confidence 3456677888777665433333333433 23334578899999999999999999999987 78889999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+.+..+|+..+.+.++++.|...+|||+||||+|.+.-.+ ..++... ...++.+.|+..||.+.... .
T Consensus 185 t~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdR--ryQelRG-DVsEiVNALLTelDgi~ene-------G 254 (368)
T COG1223 185 TELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDR--RYQELRG-DVSEIVNALLTELDGIKENE-------G 254 (368)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhh--hHHHhcc-cHHHHHHHHHHhccCcccCC-------c
Confidence 999999999999999999999999999999999999997422 2222111 23477788888888877543 4
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHH-HHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE-ILVDRT 788 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~-~Lv~~A 788 (1010)
|+.|++||+++.||+++++ ||...|+|..|+.++|..|++.++++..+.++.. +..++..+.|++++||. .++..|
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 9999999999999999999 9999999999999999999999999887776655 88999999999999995 567788
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
.|.|+.. +...++.+|+..|++.-
T Consensus 332 Lh~Ai~e-----------d~e~v~~edie~al~k~ 355 (368)
T COG1223 332 LHRAIAE-----------DREKVEREDIEKALKKE 355 (368)
T ss_pred HHHHHHh-----------chhhhhHHHHHHHHHhh
Confidence 8888765 33568899999998863
No 43
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.94 E-value=1.1e-25 Score=259.38 Aligned_cols=246 Identities=20% Similarity=0.313 Sum_probs=198.8
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+.+++|++.+++++.+.+...+ ..+.+|..+++.++.++|||||||||||++|+++|+++. ..++.+.+
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl--~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------~~fi~V~~ 250 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPL--THPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------ATFLRVVG 250 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhh--hCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC------CCEEEEec
Confidence 3567889999999999999886533 245688889999999999999999999999999999987 56778888
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+.+...+.+.....+..+|..+.++.|+||||||+|.++..+.+.......... ..+..|+..++.+... .+
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~q-r~ll~LL~~Ldg~~~~-------~~ 322 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQ-RTMLELLNQLDGFDSR-------GD 322 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHH-HHHHHHHHHHhhhccc-------CC
Confidence 888888888888889999999999999999999999998654432222222222 3333344555554322 25
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+.+|++||+++.+++++.|+|||+..|+|+.|+.++|.+||+.++.+..+. .+..+..++..++||+++|++.+|..|.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~ 401 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAG 401 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888765432 2335788999999999999999999999
Q ss_pred HHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
..|.++ ....++.+||.+|++..
T Consensus 402 ~~Alr~-----------~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 402 LLALRE-----------RRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHh-----------cCCccCHHHHHHHHHHH
Confidence 888766 23568999999998874
No 44
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.93 E-value=2.9e-26 Score=267.31 Aligned_cols=167 Identities=41% Similarity=0.669 Sum_probs=153.8
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc----------EEEE
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FISV 909 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~----------~i~v 909 (1010)
...|++|||++..++.+.+.+++|..+++.|...+++++.++|||||||||||++|+++|+.++.+ |+.+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 478999999999999999999999999999999999999999999999999999999999998654 6678
Q ss_pred ecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCC-CCcchHHHHHHHHHHhcCccccCcEEEE
Q 001808 910 KGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHD-NTGVTDRVVNQFLTELDGVEVLTGVFVF 984 (1010)
Q Consensus 910 ~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~-~~~~~~rv~~~lL~~ldg~e~~~~v~vi 984 (1010)
++++++++|+|+++..++.+|+.|+.. .|||+||||+|+++++|+.+ +.+...+++++||++|||++..++++||
T Consensus 258 ~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI 337 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVI 337 (512)
T ss_pred cchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEE
Confidence 889999999999999999999998763 79999999999999998754 3455678999999999999999999999
Q ss_pred EeCCC---------CcCCcceEEEecCCCcc
Q 001808 985 AATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 985 atTn~---------r~gR~d~~l~~~~p~~~ 1006 (1010)
+|||+ ||||||+.|+|++|+.+
T Consensus 338 ~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e 368 (512)
T TIGR03689 338 GASNREDMIDPAILRPGRLDVKIRIERPDAE 368 (512)
T ss_pred eccCChhhCCHhhcCccccceEEEeCCCCHH
Confidence 99999 99999999999999975
No 45
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-26 Score=233.89 Aligned_cols=246 Identities=20% Similarity=0.281 Sum_probs=204.3
Q ss_pred ccccccccccchhhHHHHHHHHHH-hcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEE
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFV 627 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~-ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i 627 (1010)
.+.++++++|..++++.+.+-+.. +++ ++.|..+++.||.|||+|||||||||.+||++|+... +.|+.+
T Consensus 172 pdvty~dvggckeqieklrevve~pll~---perfv~lgidppkgvllygppgtgktl~aravanrtd------acfirv 242 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLH---PERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD------ACFIRV 242 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccC---HHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC------ceEEee
Confidence 466788999999999999997755 444 5689999999999999999999999999999999876 889999
Q ss_pred ecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCC
Q 001808 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1010)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1010)
-.+.+..++.++-...++++|+.|+....||+|+||+|.+.+.+-+.....+.+..+.+++ |...+|.+.. +
T Consensus 243 igselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmle-li~qldgfdp-------r 314 (435)
T KOG0729|consen 243 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLE-LINQLDGFDP-------R 314 (435)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHH-HHHhccCCCC-------C
Confidence 9999999999999999999999999999999999999999887766554444444444443 4455555543 3
Q ss_pred CcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChH-HHHhHhhhcCCCChhhHHHHHH
Q 001808 708 GPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE-ILLDVASKCDGYDAYDLEILVD 786 (1010)
Q Consensus 708 ~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~-~l~~la~~t~g~s~~DL~~Lv~ 786 (1010)
+++-++.+||+++.++|+|.|+||+++.++|..|+.+.|..||+.+.+ .+.+..+ -++.+|+.|..-++++|+.+|.
T Consensus 315 gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihak--smsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 315 GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK--SMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecc--ccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 579999999999999999999999999999999999999999986544 3444444 3788999999999999999999
Q ss_pred HHHHHHHHhhcccCCcccccccCcccccchhhhhhccc
Q 001808 787 RTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1010)
Q Consensus 787 ~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1010)
.|-+.|++.. +...|..||..|+....
T Consensus 393 eagmfairar-----------rk~atekdfl~av~kvv 419 (435)
T KOG0729|consen 393 EAGMFAIRAR-----------RKVATEKDFLDAVNKVV 419 (435)
T ss_pred HhhHHHHHHH-----------hhhhhHHHHHHHHHHHH
Confidence 9988887652 24567889988876643
No 46
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=4.1e-25 Score=274.91 Aligned_cols=258 Identities=23% Similarity=0.325 Sum_probs=209.0
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+.+++|++..++.+.+.+...+ .....+..+++.+++++|||||||||||++|+++|.+++ .+++.++++
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~--~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~------~~fi~v~~~ 521 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPL--KHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG------ANFIAVRGP 521 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhh--hCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC------CCEEEEehH
Confidence 457788999999888888665433 345678888999999999999999999999999999987 778999999
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
++...+.++.++.++.+|..|....|+||||||+|.+++.+.... .......+...|+..++..... .++
T Consensus 522 ~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~---~~~~~~~~~~~lL~~ldg~~~~-------~~v 591 (733)
T TIGR01243 522 EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF---DTSVTDRIVNQLLTEMDGIQEL-------SNV 591 (733)
T ss_pred HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC---CccHHHHHHHHHHHHhhcccCC-------CCE
Confidence 999999999999999999999999999999999999986443221 2223456777777878765432 259
Q ss_pred EEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 711 ~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
++|+|||+++.+|++++|+|||+..++++.|+.++|.+||+.+.++..+. ++..+..+|..|+||+++||..+|++|..
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~ 670 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAM 670 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999777654332 33358899999999999999999999999
Q ss_pred HHHHhhcccCCc--c-----cccccCcccccchhhhhhcccccc
Q 001808 791 AAVGRYLHSDSS--F-----EKHIKPTLVRDDFSQAMHEFLPVA 827 (1010)
Q Consensus 791 ~a~~r~~~~~~~--~-----~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1010)
.++.+....... . .......++.+||..|+....|+.
T Consensus 671 ~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 671 AALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred HHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCC
Confidence 888875422110 0 011224689999999999887764
No 47
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.93 E-value=3.2e-24 Score=269.59 Aligned_cols=386 Identities=15% Similarity=0.229 Sum_probs=236.6
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc----ceeeeEEEEe
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVC 628 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i~ 628 (1010)
++.+.|.+..+..+++.+.. ....+++|+||||+|||++++.+|..+.... .....++.++
T Consensus 172 ~~~~igr~~ei~~~~~~l~r---------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhc---------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 45567777766665553311 1235689999999999999999999874321 1125677777
Q ss_pred ccccc--CCchhhHHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCcc
Q 001808 629 CSRLS--LEKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1010)
Q Consensus 629 ~s~l~--~~~~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1010)
...+. ..+.++.++.+..+|..+... .+.||||||+|.+.+..... + .. ...+.|...+.
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-~--~~----d~~~~Lk~~l~---------- 299 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-G--AM----DAGNMLKPALA---------- 299 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-c--hh----HHHHHhchhhh----------
Confidence 77664 356678888999999988653 58999999999998532211 1 11 22233333221
Q ss_pred CCCcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh----cccccChHHHHhHhhhcCCC
Q 001808 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 706 ~~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~----~~~~~~~~~l~~la~~t~g~ 776 (1010)
.+.+.+|++|+..+ ..++++.| ||. .+.++.|+.+++..||+.+..+ +++.+.++.+..++..+.+|
T Consensus 300 -~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 300 -RGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred -cCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 13589999998764 46999999 997 6899999999999999876554 34556788888887777766
Q ss_pred Ch-----hhHHHHHHHHHHHHHHhhc-----------------------ccCCcc-------------------------
Q 001808 777 DA-----YDLEILVDRTVHAAVGRYL-----------------------HSDSSF------------------------- 803 (1010)
Q Consensus 777 s~-----~DL~~Lv~~A~~~a~~r~~-----------------------~~~~~~------------------------- 803 (1010)
.. .-.-.+++.|+........ ......
T Consensus 376 i~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (852)
T TIGR03346 376 ITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEE 455 (852)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3333444444322110000 000000
Q ss_pred --c---------------------------------------------------------------ccccCcccccchhh
Q 001808 804 --E---------------------------------------------------------------KHIKPTLVRDDFSQ 818 (1010)
Q Consensus 804 --~---------------------------------------------------------------~~~~~~lt~eDf~~ 818 (1010)
. ......++.+|+..
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~ 535 (852)
T TIGR03346 456 QWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAE 535 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHH
Confidence 0 00000122222222
Q ss_pred hhhccccccccccccccC----CCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHH
Q 001808 819 AMHEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHI 894 (1010)
Q Consensus 819 Al~~~~P~~lr~v~~~~~----~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~l 894 (1010)
.+...+............ .........+.|++.+.+.+.+.+...... -.-+.+|...+||+||+|||||++
T Consensus 536 v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g----l~~~~~p~~~~Lf~Gp~GvGKt~l 611 (852)
T TIGR03346 536 VVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG----LSDPNRPIGSFLFLGPTGVGKTEL 611 (852)
T ss_pred HHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc----CCCCCCCCeEEEEEcCCCCCHHHH
Confidence 222221111100000000 000123456778888777777776532100 012335667899999999999999
Q ss_pred HHHHHHHc---CCcEEEEecchhhh-----hhhcccHH-----HHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcch
Q 001808 895 VGAAAAAC---SLRFISVKGPELLN-----KYIGASEQ-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVT 961 (1010)
Q Consensus 895 Ak~lA~~~---g~~~i~v~~~el~~-----~~ig~se~-----~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~ 961 (1010)
|+++|..+ +.+++.++++++.. +++|.... ..+.+....+..+.+|+|||||+++ +
T Consensus 612 A~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~ 680 (852)
T TIGR03346 612 AKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------H 680 (852)
T ss_pred HHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------C
Confidence 99999987 56899999987643 22232111 1234555556677789999999988 4
Q ss_pred HHHHHHHHHHhcCcc---------ccCcEEEEEeCCC
Q 001808 962 DRVVNQFLTELDGVE---------VLTGVFVFAATRL 989 (1010)
Q Consensus 962 ~rv~~~lL~~ldg~e---------~~~~v~viatTn~ 989 (1010)
..+.+.||+.||... ...+++||+|||.
T Consensus 681 ~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 568999999997321 1357889999998
No 48
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.6e-25 Score=262.90 Aligned_cols=248 Identities=25% Similarity=0.354 Sum_probs=209.3
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+..++|++...+.+.+.+...+. ....|...++.++.++|||||||||||++|+++|.+++ .+++.++.
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~--~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~ 309 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLK--RPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKG 309 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhh--ChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeC
Confidence 45567888888888888887755443 33457777889999999999999999999999999887 88999999
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+++.+++.++.++.++.+|..|....|+||||||+|++++.++..... ...++...|+..++...... +
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~----~~~r~~~~lL~~~d~~e~~~-------~ 378 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG----SGRRVVGQLLTELDGIEKAE-------G 378 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch----HHHHHHHHHHHHhcCCCccC-------c
Confidence 999999999999999999999999999999999999999655433321 12467777888887665433 5
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccc-cChHHHHhHhhhcCCCChhhHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~-~~~~~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
|++|++||.++.+++++.|+|||+..+++++|+.++|.+|++.++...... ..+..+..++..++||+++|+..+|++|
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea 458 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREA 458 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999865554 4456788999999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhccccc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1010)
...+..+.. ...++.+||..|++...|+
T Consensus 459 ~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 459 ALEALREAR----------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred HHHHHHHhc----------cCCccHHHHHHHHHhcCCC
Confidence 999887742 3568999999999986665
No 49
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.93 E-value=1.9e-25 Score=256.19 Aligned_cols=167 Identities=35% Similarity=0.550 Sum_probs=156.4
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|+||||++.+++.+.+.+++|..+++.|.+.++.++.++||+||||||||++|+++|..++.+|+.+.++++..+|+
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYL 220 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCc---chHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~---~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+++..++.+|..|+...||||||||+|+++++|.....+ ...+++.+||++|||+....+++||+|||+
T Consensus 221 ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA 300 (398)
T PTZ00454 221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA 300 (398)
T ss_pred chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH
Confidence 9999999999999999999999999999999988544333 345789999999999988889999999998
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.|++++|+.+
T Consensus 301 llR~GRfd~~I~~~~P~~~ 319 (398)
T PTZ00454 301 LLRPGRLDRKIEFPLPDRR 319 (398)
T ss_pred HcCCCcccEEEEeCCcCHH
Confidence 89999999999999865
No 50
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.92 E-value=1e-24 Score=259.85 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=197.2
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+++++|.+..++++.+.+..+. .+..+...+..+++++||+||||||||++++++|++++ .+++.+++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~---~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~~~i~~ 121 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLK---NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISG 121 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHH---CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCeeeccH
Confidence 4567789999998888877555433 33467777888899999999999999999999999987 67888998
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+++...+.+...+.++.+|..+....|+||||||+|.+...+...... ...........|+..++.+.... .
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~lL~~~d~~~~~~-------~ 193 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGTNT-------G 193 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC-ccHHHHHHHHHHHhhhccccCCC-------C
Confidence 888776667777889999999999999999999999998644332111 12233455566666677654322 4
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+++|++||.++.+++++.|+|||+..++++.|+.++|.+|++.++...... .+..+..++..+.||+++|+..++++|.
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~ 272 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAA 272 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999988765443 3456789999999999999999999987
Q ss_pred HHHHHhhcccCCcccccccCcccccchhhhhhcccc
Q 001808 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
..+.++ ....++.+||..|+.....
T Consensus 273 ~~a~~~-----------~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 273 LLAARK-----------NKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHc-----------CCCCCCHHHHHHHHHHHhc
Confidence 766543 2246889999999887543
No 51
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=249.01 Aligned_cols=228 Identities=25% Similarity=0.269 Sum_probs=192.3
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
....+++|+.++++-+.+.+ ....+.+..|.+..++.+.|||||||||||||.||.++|...+ ..++.+..-
T Consensus 664 i~w~digg~~~~k~~l~~~i--~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fisvKGP 735 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVI--EWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFISVKGP 735 (952)
T ss_pred CCceecccHHHHHHHHHHHH--hccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEEecCH
Confidence 34567777777666665533 4566678899999999999999999999999999999999877 788889999
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
.+..++.|..++.++++|..|...+|||||+||+|+++++|+-. +.....++.++|+..||.... ...|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD----sTGVTDRVVNQlLTelDG~Eg-------l~GV 804 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD----STGVTDRVVNQLLTELDGAEG-------LDGV 804 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC----CCCchHHHHHHHHHhhccccc-------cceE
Confidence 99999999999999999999999999999999999999755422 222345788888888887543 2359
Q ss_pred EEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 711 ~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
.++|+|.+++.+||+|+|+||+++.++-+.|++.+|.+|++.+..... ..++.+++.+|..|+||+++||..++..|..
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~-~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL-KDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC-CccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998766432 2345568999999999999999999999988
Q ss_pred HHHHhhcc
Q 001808 791 AAVGRYLH 798 (1010)
Q Consensus 791 ~a~~r~~~ 798 (1010)
.++.+++.
T Consensus 884 ~avh~~l~ 891 (952)
T KOG0735|consen 884 AAVHEILK 891 (952)
T ss_pred HHHHHHHH
Confidence 88877653
No 52
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.92 E-value=2.2e-25 Score=229.01 Aligned_cols=163 Identities=31% Similarity=0.483 Sum_probs=142.1
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...++|+.|++++|..-+-.++ -++.|+.|..+. +.++|||||||||||++|+++|.+...+++.++..++++.|+
T Consensus 117 ~it~ddViGqEeAK~kcrli~~-yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIME-YLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHH-HhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 4679999999999876443332 234566666654 579999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCC-CCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC-------Cc
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGH-DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL-------EF 991 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~-~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~-------r~ 991 (1010)
|+..+.++++|++|+...|||+||||+|+++-.|.- .-.|--..++|.||++|||+...+||+.||+||+ -.
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 999999999999999999999999999999988753 2244456799999999999999999999999999 55
Q ss_pred CCcceEEEecCCCcc
Q 001808 992 FHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 992 gR~d~~l~~~~p~~~ 1006 (1010)
.||...|+|.+|+++
T Consensus 273 sRFEeEIEF~LP~~e 287 (368)
T COG1223 273 SRFEEEIEFKLPNDE 287 (368)
T ss_pred hhhhheeeeeCCChH
Confidence 799999999999976
No 53
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.1e-25 Score=257.99 Aligned_cols=166 Identities=29% Similarity=0.562 Sum_probs=153.2
Q ss_pred CCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhh
Q 001808 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1010)
Q Consensus 839 ~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ 918 (1010)
..+.+.|+.|.+++++.+.+.+. .++.|..|...|.+-+.|+||+||||||||+||+++|.+.+.+|+.+++++++..|
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 35789999999999999999988 46778888888888999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCC---CCcchHHHHHHHHHHhcCccccCcEEEEEeCCC------
Q 001808 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHD---NTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL------ 989 (1010)
Q Consensus 919 ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~---~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------ 989 (1010)
+|-....+|++|.+|+...|||+||||+|++...||.+ .....+..+||||.+|||.+..++|+|+|+|||
T Consensus 224 VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ 303 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDP 303 (596)
T ss_pred cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchH
Confidence 99999999999999999999999999999999999644 222345699999999999998899999999999
Q ss_pred ---CcCCcceEEEecCCCc
Q 001808 990 ---EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 990 ---r~gR~d~~l~~~~p~~ 1005 (1010)
||||||+.|.++.||.
T Consensus 304 ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 304 ALLRPGRFDRQILVELPDI 322 (596)
T ss_pred hhcCCCCcceeeecCCcch
Confidence 9999999999999995
No 54
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=9.7e-25 Score=239.03 Aligned_cols=132 Identities=15% Similarity=0.169 Sum_probs=118.5
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhc-----CCCeEEEEeCCC
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFD 947 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~-----~~p~VLfiDEid 947 (1010)
.+++++.+++|+||||||||.+|+++|.++|.+++.++++++.++|+|++|+.+|++|+.|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 567889999999999999999999999999999999999999999999999999999999975 479999999999
Q ss_pred ccCCCCCCCCCcchHHHH-HHHHHHhcCc------------cccCcEEEEEeCCC---------CcCCcceEEEecCCCc
Q 001808 948 SIAPKRGHDNTGVTDRVV-NQFLTELDGV------------EVLTGVFVFAATRL---------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 948 ~l~~~R~~~~~~~~~rv~-~~lL~~ldg~------------e~~~~v~viatTn~---------r~gR~d~~l~~~~p~~ 1005 (1010)
+++++|+.++..+..+++ .+||+.||+. +...+|+||+|||+ ||||||+.+ .+|+.
T Consensus 223 A~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 223 AGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred hcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 999999877666666665 8999999863 34678999999999 999999975 47876
Q ss_pred c
Q 001808 1006 L 1006 (1010)
Q Consensus 1006 ~ 1006 (1010)
+
T Consensus 301 e 301 (413)
T PLN00020 301 E 301 (413)
T ss_pred H
Confidence 4
No 55
>CHL00176 ftsH cell division protein; Validated
Probab=99.92 E-value=3.9e-24 Score=257.55 Aligned_cols=244 Identities=20% Similarity=0.319 Sum_probs=195.8
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+++++|++..++++.+.+..+.. ...|..++...++++||+||||||||++|+++|++++ .++++++|+
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~---~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~------~p~i~is~s 250 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKK---PERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE------VPFFSISGS 250 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhC---HHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeeeccHH
Confidence 4577889999988888775554433 3357777888899999999999999999999999987 778889999
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
.+.....+.....+..+|..+..+.|+||||||+|.+...+....+. ........+..|+..++.+.... ++
T Consensus 251 ~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~-~~~e~~~~L~~LL~~~dg~~~~~-------~V 322 (638)
T CHL00176 251 EFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG-GNDEREQTLNQLLTEMDGFKGNK-------GV 322 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC-CcHHHHHHHHHHHhhhccccCCC-------Ce
Confidence 88766666666788999999999999999999999998544332222 22333455666666676654322 58
Q ss_pred EEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 711 ~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
++|++||+++.+++++.|+|||+..+.++.|+.++|.+||+.++..... ..+..+..+|..+.||+++||+.++++|+.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal 401 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAI 401 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998886332 345568899999999999999999999887
Q ss_pred HHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
.+.++ ....++.+||..|+...
T Consensus 402 ~a~r~-----------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 402 LTARR-----------KKATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHh-----------CCCCcCHHHHHHHHHHH
Confidence 66544 23468899999998875
No 56
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.91 E-value=5.9e-24 Score=244.12 Aligned_cols=245 Identities=24% Similarity=0.341 Sum_probs=193.0
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+.+++|++.+++++.+.+...+. .+..|...++.+|.++||+||||||||++|+++|+.++ ..++.+.+
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~--~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------~~~~~v~~ 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLK--HPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------ATFIRVVG 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhc--CHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC------CCEEecch
Confidence 34567899999999999998865332 34578888999999999999999999999999999987 56677777
Q ss_pred ccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+...+.+.....+..+|..+....|+||||||+|.+...+.+...+.... ....+..+...++.+... ++
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~-~~~~l~~ll~~ld~~~~~-------~~ 261 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDRE-VQRTLMQLLAELDGFDPR-------GN 261 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHH-HHHHHHHHHHHhhCCCCC-------CC
Confidence 7777777777778889999999999999999999999985443322222222 222233333444433221 25
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+.+|+|+|.++.+++++.+++||+..++++.|+.++|.+|++.+..+..+. .+..+..++..++||+++|+..+|+.|.
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~ 340 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAG 340 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887654332 2235889999999999999999999999
Q ss_pred HHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
+.|+++ ....++.+||.+|+..
T Consensus 341 ~~a~~~-----------~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 341 MFAIRE-----------ERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHh-----------CCCccCHHHHHHHHHH
Confidence 888765 2356899999998865
No 57
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.91 E-value=2.3e-23 Score=260.56 Aligned_cols=386 Identities=16% Similarity=0.249 Sum_probs=227.3
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc----eeeeEEEEe
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFVC 628 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~i~ 628 (1010)
++.+.|.+..+..+++-|.. ....+++|+||||||||++++.+|..+..... ....++.++
T Consensus 177 l~~vigr~~ei~~~i~iL~r---------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQR---------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhc---------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 45677787766655553321 11256999999999999999999999853211 125677787
Q ss_pred ccccc--CCchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCcc
Q 001808 629 CSRLS--LEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSC 705 (1010)
Q Consensus 629 ~s~l~--~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~ 705 (1010)
...+. ..+.++.++.++.+|.+... ..+.||||||+|.+.+.... ++ .. ...+.|...+.
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~-~~--~~----d~~~~lkp~l~---------- 304 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA-DG--AM----DAGNMLKPALA---------- 304 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC-cc--ch----hHHHHhcchhh----------
Confidence 77765 34668888899999987643 56889999999999854321 11 11 12222332221
Q ss_pred CCCcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh----cccccChHHHHhHhhhcCCC
Q 001808 706 GIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----RSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 706 ~~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~----~~~~~~~~~l~~la~~t~g~ 776 (1010)
.|.+.+|++|+..+ .+++++.| ||+ .|.++.|+.+++..|++.+..+ +++.++++.+...+..+++|
T Consensus 305 -~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry 380 (857)
T PRK10865 305 -RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRY 380 (857)
T ss_pred -cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhcc
Confidence 13589999999866 37999999 998 6889999999999999876654 34556677766665555554
Q ss_pred Ch-----hhHHHHHHHHHHHHH--------------------------------------------------Hhhc----
Q 001808 777 DA-----YDLEILVDRTVHAAV--------------------------------------------------GRYL---- 797 (1010)
Q Consensus 777 s~-----~DL~~Lv~~A~~~a~--------------------------------------------------~r~~---- 797 (1010)
.. .....+++.++.... .++.
T Consensus 381 ~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~e 460 (857)
T PRK10865 381 IADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEE 460 (857)
T ss_pred ccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 111111111110000 0000
Q ss_pred --cc-CCcc------------------------------------------------------cccccCcccccchhhhh
Q 001808 798 --HS-DSSF------------------------------------------------------EKHIKPTLVRDDFSQAM 820 (1010)
Q Consensus 798 --~~-~~~~------------------------------------------------------~~~~~~~lt~eDf~~Al 820 (1010)
.. .... .......++.+|+...+
T Consensus 461 q~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv 540 (857)
T PRK10865 461 EWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVL 540 (857)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHH
Confidence 00 0000 00000112333333333
Q ss_pred hccccccccccccccC----CCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHH
Q 001808 821 HEFLPVAMRDITKTSA----EGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVG 896 (1010)
Q Consensus 821 ~~~~P~~lr~v~~~~~----~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk 896 (1010)
...+......+..... .........+.|++.+.+.+...+..... ....+-+|.+.+||+||+|||||++|+
T Consensus 541 ~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~----gl~~~~~p~~~~Lf~Gp~G~GKT~lA~ 616 (857)
T PRK10865 541 ARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRA----GLSDPNRPIGSFLFLGPTGVGKTELCK 616 (857)
T ss_pred HHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHh----cccCCCCCCceEEEECCCCCCHHHHHH
Confidence 3332221111100000 00012233566777777777766653210 001123444679999999999999999
Q ss_pred HHHHHc---CCcEEEEecchhhhh-----hhcccHH-----HHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHH
Q 001808 897 AAAAAC---SLRFISVKGPELLNK-----YIGASEQ-----AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDR 963 (1010)
Q Consensus 897 ~lA~~~---g~~~i~v~~~el~~~-----~ig~se~-----~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~r 963 (1010)
++|..+ +.+++.++++++... .+|.... ....+....+..+.+||||||++.+ +..
T Consensus 617 aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~ 685 (857)
T PRK10865 617 ALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPD 685 (857)
T ss_pred HHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHH
Confidence 999887 457999999887532 2222110 1122334444556689999999987 355
Q ss_pred HHHHHHHHhcCcc---------ccCcEEEEEeCCC
Q 001808 964 VVNQFLTELDGVE---------VLTGVFVFAATRL 989 (1010)
Q Consensus 964 v~~~lL~~ldg~e---------~~~~v~viatTn~ 989 (1010)
+.+.|++.|+... ...+++||+|||.
T Consensus 686 v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 8899999997321 1356789999986
No 58
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.3e-24 Score=250.45 Aligned_cols=247 Identities=21% Similarity=0.330 Sum_probs=208.6
Q ss_pred ccccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEe
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~ 628 (1010)
....+.++-|.++.++++.+-+.-+..|. .|..+|...|+|+||+||||||||.|||++|.+.+ .++..++
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~---ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~iS 215 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPK---KYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSIS 215 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCch---hhHhcccccccceeEecCCCCCcHHHHHHHhcccC------CCceecc
Confidence 44557788899999999888776666544 68888999999999999999999999999999987 7899999
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCC
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
.+++....++.-...++++|.+|..++|||+||||+|++...+....+. .....++.+++|+..||.+....
T Consensus 216 GS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg-gnderEQTLNQlLvEmDGF~~~~------- 287 (596)
T COG0465 216 GSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG-GNDEREQTLNQLLVEMDGFGGNE------- 287 (596)
T ss_pred chhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC-CchHHHHHHHHHHhhhccCCCCC-------
Confidence 9999988888888899999999999999999999999998766544333 44556678888989999887432
Q ss_pred cEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHH
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
.|.++++||+++-+|++|.|+|||++.+.++.||...|.+|++.+++...+. .+-.+..+|+.|.||+++|+.+++..|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEA 366 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHH
Confidence 5999999999999999999999999999999999999999999877765554 333466799999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhccc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFL 824 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~ 824 (1010)
...+.++ ....+++.||..|.....
T Consensus 367 al~aar~-----------n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 367 ALLAARR-----------NKKEITMRDIEEAIDRVI 391 (596)
T ss_pred HHHHHHh-----------cCeeEeccchHHHHHHHh
Confidence 8888766 335678888888877643
No 59
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.4e-24 Score=228.56 Aligned_cols=166 Identities=32% Similarity=0.549 Sum_probs=152.8
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...++.+||+..+...+.+.+++|+..+.+|.+.++.++.+++||||||+|||.+|+++|..+|.+|+.+..+++.++|+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcc---hHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~---~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|++.+-+|+.|..|+...|||+|+||+|++.++|-...+.. -.|.+=.||.+|||.+..++|-+|+|||+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 99999999999999999999999999999999984333322 23455567888999999999999999999
Q ss_pred --CcCCcceEEEecCCCc
Q 001808 990 --EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~ 1005 (1010)
||||+||.++.|+|+.
T Consensus 288 LlRpGRldrk~~iPlpne 305 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNE 305 (388)
T ss_pred hcCCccccceeccCCcch
Confidence 9999999999999973
No 60
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.91 E-value=1.9e-24 Score=249.14 Aligned_cols=167 Identities=35% Similarity=0.575 Sum_probs=155.2
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|++++|+++.++.+.+.+.+|..+++.|...++.++.++||+||||||||++|+++|..++.+|+.++++++..+|+
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~ 206 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI 206 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCc---chHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~---~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+++..++.+|+.|+...||||||||+|+++++|+.+..+ ...+.+.+||.+||+....+++.||+|||+
T Consensus 207 g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~a 286 (389)
T PRK03992 207 GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPA 286 (389)
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHH
Confidence 9999999999999999999999999999999988754332 235678889999999888889999999998
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.+++++|+.+
T Consensus 287 llRpgRfd~~I~v~~P~~~ 305 (389)
T PRK03992 287 ILRPGRFDRIIEVPLPDEE 305 (389)
T ss_pred HcCCccCceEEEECCCCHH
Confidence 89999999999999864
No 61
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.91 E-value=1.2e-23 Score=245.50 Aligned_cols=195 Identities=20% Similarity=0.318 Sum_probs=155.4
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc----ceeeeEE
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIV 625 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~ 625 (1010)
...+.+++|++.+++++.+.+...+. .+.+|..+++++|+++|||||||||||++++++|+++.... .....++
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~--~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl 255 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFL--HPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFL 255 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhh--CHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEE
Confidence 34578899999999999998865332 45688999999999999999999999999999999986431 1113345
Q ss_pred EEecccccCCchhhHHHHHHHHHHHHHhc----CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcccc
Q 001808 626 FVCCSRLSLEKGPIIRQALSNFISEALDH----APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1010)
Q Consensus 626 ~i~~s~l~~~~~~~~~~~l~~~f~~a~~~----~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1010)
.+..+.+...+.++.++.++.+|+.+... .|+||||||+|.+++.+.... +......++..|+..++.+...
T Consensus 256 ~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~---s~d~e~~il~~LL~~LDgl~~~- 331 (512)
T TIGR03689 256 NIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV---SSDVETTVVPQLLSELDGVESL- 331 (512)
T ss_pred eccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc---cchHHHHHHHHHHHHhcccccC-
Confidence 56666777778888888899898887653 699999999999986543221 2223346667777777766432
Q ss_pred CCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh
Q 001808 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1010)
Q Consensus 702 ~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~ 756 (1010)
+++++|++||+++.||+++.|+|||+.+|+++.|+.++|.+||+.++..
T Consensus 332 ------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 332 ------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 2599999999999999999999999999999999999999999998864
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-24 Score=263.79 Aligned_cols=167 Identities=33% Similarity=0.592 Sum_probs=159.7
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPEL 914 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el 914 (1010)
...|+++||++.++..|++++..|+.|++.|.+..+.|+.|+||+||||||||.+|+++|..| ...|+.-++++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 478999999999999999999999999999999999999999999999999999999999999 345777889999
Q ss_pred hhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC-----
Q 001808 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL----- 989 (1010)
Q Consensus 915 ~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~----- 989 (1010)
+++|+|+.|++++.+|+.|+...|.|+||||||-++|.|.......+..++.+||..|||+..++.|+||+||||
T Consensus 341 lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~d 420 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAID 420 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccc
Confidence 999999999999999999999999999999999999999988888899999999999999999999999999999
Q ss_pred ----CcCCcceEEEecCCCcc
Q 001808 990 ----EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 ----r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.+||++|+.+
T Consensus 421 paLRRPgrfdref~f~lp~~~ 441 (1080)
T KOG0732|consen 421 PALRRPGRFDREFYFPLPDVD 441 (1080)
T ss_pred hhhcCCcccceeEeeeCCchH
Confidence 99999999999999753
No 63
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-24 Score=235.52 Aligned_cols=168 Identities=31% Similarity=0.528 Sum_probs=157.7
Q ss_pred CCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCC-CCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhh
Q 001808 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1010)
Q Consensus 839 ~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~-lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~ 917 (1010)
..+.|+||||++.+++.+.+.+.+|.++++.|+... ++++.|+|||||||||||++|+++|.+.|.+|+.+.++.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 358899999999999999999999999999997654 4889999999999999999999999999999999999999999
Q ss_pred hhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCc--EEEEEeCCC------
Q 001808 918 YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG--VFVFAATRL------ 989 (1010)
Q Consensus 918 ~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~--v~viatTn~------ 989 (1010)
|.|++++.++.+|.-|..-.|||+||||+|+++..|+..+.+.+....++|+..-||+...++ |+|+|||||
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999999888888999999999999999987765 999999999
Q ss_pred -CcCCcceEEEecCCCcc
Q 001808 990 -EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 -r~gR~d~~l~~~~p~~~ 1006 (1010)
-.+|+-+.+++++|+.+
T Consensus 247 AiiRR~p~rf~V~lP~~~ 264 (386)
T KOG0737|consen 247 AIIRRLPRRFHVGLPDAE 264 (386)
T ss_pred HHHHhCcceeeeCCCchh
Confidence 66799999999999854
No 64
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.91 E-value=2.6e-24 Score=248.01 Aligned_cols=167 Identities=33% Similarity=0.520 Sum_probs=155.0
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|+||||++..++.+.+.+++++.+++.|...++.++.++||+||||||||++|+++|..++.+|+.+.++++.++|+
T Consensus 179 ~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~ 258 (438)
T PTZ00361 179 LESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYL 258 (438)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcc---hHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV---TDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~---~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+.+..++.+|..|+...|||+||||+|+++.+|.....+. ..+.+.+||.+|||+....++.||+|||+
T Consensus 259 Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpa 338 (438)
T PTZ00361 259 GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPA 338 (438)
T ss_pred chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHH
Confidence 99999999999999999999999999999999886543332 35678899999999988889999999998
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.|+|++|+.+
T Consensus 339 LlRpGRfd~~I~~~~Pd~~ 357 (438)
T PTZ00361 339 LIRPGRIDRKIEFPNPDEK 357 (438)
T ss_pred hccCCeeEEEEEeCCCCHH
Confidence 89999999999999864
No 65
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.91 E-value=9.3e-24 Score=264.62 Aligned_cols=214 Identities=17% Similarity=0.200 Sum_probs=168.8
Q ss_pred hhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCc------------------------
Q 001808 581 WFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK------------------------ 636 (1010)
Q Consensus 581 ~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~------------------------ 636 (1010)
....+|+.+|+||||+||||||||.||+++|.+.+ .+++.++++++...+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~ 1694 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDID 1694 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhcccccccccccccccccccccccccc
Confidence 34677889999999999999999999999999987 778888887766322
Q ss_pred -----------------h--hhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001808 637 -----------------G--PIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1010)
Q Consensus 637 -----------------~--~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1010)
. +.-+..++.+|+.|...+||||||||+|.+... + . . ...+.+|+..|+..
T Consensus 1695 ~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~--d-----s-~--~ltL~qLLneLDg~ 1764 (2281)
T CHL00206 1695 RDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN--E-----S-N--YLSLGLLVNSLSRD 1764 (2281)
T ss_pred cccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC--c-----c-c--eehHHHHHHHhccc
Confidence 0 111234788999999999999999999999742 1 0 0 12255666777654
Q ss_pred ccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChH--HHHhHhhhcCC
Q 001808 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDE--ILLDVASKCDG 775 (1010)
Q Consensus 698 ~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~--~l~~la~~t~g 775 (1010)
... +...+|+||||||+++.+||+|+|+|||++.|+++.|+..+|.+++..++...++.+... .+..+|+.|.|
T Consensus 1765 ~~~----~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~G 1840 (2281)
T CHL00206 1765 CER----CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMG 1840 (2281)
T ss_pred ccc----CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCC
Confidence 321 112369999999999999999999999999999999999999999886654445544432 47889999999
Q ss_pred CChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcccc
Q 001808 776 YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 776 ~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
|+|+||..+|.+|+..|+++ ....++.+++..|++..+.
T Consensus 1841 fSGADLanLvNEAaliAirq-----------~ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1841 SNARDLVALTNEALSISITQ-----------KKSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred CCHHHHHHHHHHHHHHHHHc-----------CCCccCHHHHHHHHHHHHh
Confidence 99999999999999988876 3356888999999988764
No 66
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.8e-24 Score=237.88 Aligned_cols=162 Identities=35% Similarity=0.542 Sum_probs=137.8
Q ss_pred CCCchhh-HHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC-CcEEEEecchhhhhhhccc
Q 001808 845 DVGGLTD-IQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-LRFISVKGPELLNKYIGAS 922 (1010)
Q Consensus 845 dI~Gl~~-vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g-~~~i~v~~~el~~~~ig~s 922 (1010)
.|||++. ..+..+.......--|+...++++.+-.|+|||||||||||.+|+.++.+++ .+--.++++++++||+|++
T Consensus 222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS 301 (744)
T KOG0741|consen 222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES 301 (744)
T ss_pred ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence 3567653 3344444444333346677888999999999999999999999999999995 4456689999999999999
Q ss_pred HHHHHHHHHHHhcC--------CCeEEEEeCCCccCCCCCC--CCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC---
Q 001808 923 EQAVRDIFSKATAA--------APCLLFFDEFDSIAPKRGH--DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL--- 989 (1010)
Q Consensus 923 e~~l~~lf~~A~~~--------~p~VLfiDEid~l~~~R~~--~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~--- 989 (1010)
|.++|.+|..|... .--|++|||+|+++.+||+ +++|+++.|+||||+.|||++..++++||+.|||
T Consensus 302 E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~Dl 381 (744)
T KOG0741|consen 302 EENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDL 381 (744)
T ss_pred HHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhh
Confidence 99999999998542 2249999999999999986 5789999999999999999999999999999999
Q ss_pred ------CcCCcceEEEecCCCcc
Q 001808 990 ------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 ------r~gR~d~~l~~~~p~~~ 1006 (1010)
|||||.-.+++.+||-.
T Consensus 382 IDEALLRPGRlEVqmEIsLPDE~ 404 (744)
T KOG0741|consen 382 IDEALLRPGRLEVQMEISLPDEK 404 (744)
T ss_pred HHHHhcCCCceEEEEEEeCCCcc
Confidence 99999999999999864
No 67
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.4e-23 Score=232.93 Aligned_cols=257 Identities=18% Similarity=0.238 Sum_probs=201.5
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
.....+.|++.+.+.+.+.+.. ...++..|..+ ..+.+++||.||||+|||+|++++|.+.+ +.+..++.+
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~--p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~------atff~iSas 220 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVIL--PLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESG------ATFFNISAS 220 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhh--cccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhc------ceEeeccHH
Confidence 4455677777777777775533 22233455554 34557899999999999999999999988 889999999
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
.+.+++.|+.++.+..+|+.|...+|+|+||||+|+++.++.+.++..+. +...++|+.......... ..|
T Consensus 221 sLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~sr---r~ktefLiq~~~~~s~~~------drv 291 (428)
T KOG0740|consen 221 SLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSR---RLKTEFLLQFDGKNSAPD------DRV 291 (428)
T ss_pred HhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccch---hhhhHHHhhhccccCCCC------CeE
Confidence 99999999999999999999999999999999999999877655544332 244445544433222211 269
Q ss_pred EEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 711 ~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
++|+|||.++.+|.+++| ||..++++|.|+.+.|..+++.++.+.+..+.+..+..+++.|+||++.|+..+|..|..
T Consensus 292 lvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~ 369 (428)
T KOG0740|consen 292 LVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAM 369 (428)
T ss_pred EEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhc
Confidence 999999999999999999 999999999999999999999999988777888899999999999999999999999876
Q ss_pred HHHHhhccc--CCcccccccCcccccchhhhhhcccccc
Q 001808 791 AAVGRYLHS--DSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1010)
Q Consensus 791 ~a~~r~~~~--~~~~~~~~~~~lt~eDf~~Al~~~~P~~ 827 (1010)
.-.+..... .........+.++..||..+++...|..
T Consensus 370 ~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 370 GPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred CchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 555443321 1122233446678889999888877653
No 68
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.90 E-value=1.3e-23 Score=250.33 Aligned_cols=166 Identities=30% Similarity=0.584 Sum_probs=153.2
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|++++|++++++.+.+.+.+ .++++.+...+.+++.++||+||||||||++|+++|..++.+++.++++++.+.|.
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~ 129 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 129 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh
Confidence 57899999999999999998886 68888888888888999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCC---CcchHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~---~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|.++..++.+|+.|+...||||||||+|.++++|+.+. .....+++++||.+||++...++++||+|||+
T Consensus 130 g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~a 209 (495)
T TIGR01241 130 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPA 209 (495)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHH
Confidence 99999999999999999999999999999999887532 23456899999999999988899999999999
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.+++++|+.+
T Consensus 210 l~r~gRfd~~i~i~~Pd~~ 228 (495)
T TIGR01241 210 LLRPGRFDRQVVVDLPDIK 228 (495)
T ss_pred HhcCCcceEEEEcCCCCHH
Confidence 89999999999999963
No 69
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.88 E-value=8.5e-22 Score=240.21 Aligned_cols=248 Identities=21% Similarity=0.281 Sum_probs=194.6
Q ss_pred ccccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEe
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~ 628 (1010)
+...+.++.|.+..++.+.+.+..+.. ...+..++...++++||+||||||||+++++++++++ .+++.++
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~---~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~------~~f~~is 217 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLRE---PSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTIS 217 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhC---HHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCEEEEe
Confidence 345577788888888777665544332 2344556677788899999999999999999999987 6788899
Q ss_pred cccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCC
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++++.....+.....+..+|..+....|+||||||+|.+...+....+. ........+..|+..++.+....
T Consensus 218 ~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-~~~~~~~~ln~lL~~mdg~~~~~------- 289 (644)
T PRK10733 218 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-GHDEREQTLNQMLVEMDGFEGNE------- 289 (644)
T ss_pred hHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-CchHHHHHHHHHHHhhhcccCCC-------
Confidence 9888776666667788899999999999999999999998654432222 22333456666767777665432
Q ss_pred cEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHH
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
.+++|++||+++.+++++.|+|||++++.++.|+.++|.+|++.++.+..+. .+..+..++..+.||+++||..+|++|
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEA 368 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988765432 223467899999999999999999999
Q ss_pred HHHHHHhhcccCCcccccccCcccccchhhhhhcccc
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
...+.++ ....++..||..|+....+
T Consensus 369 a~~a~r~-----------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 369 ALFAARG-----------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHc-----------CCCcccHHHHHHHHHHHhc
Confidence 8877654 3356889999998876544
No 70
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.9e-23 Score=217.79 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=190.3
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
-++++++|...++.++.+.+.. .-....+|...++.+|.+++||||||+|||.+|+++|..++ .+++.+..+
T Consensus 129 ~s~~~~ggl~~qirelre~iel--pl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg------~nfl~v~ss 200 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIEL--PLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMG------VNFLKVVSS 200 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEe--eccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcC------CceEEeeHh
Confidence 4578888998888888886644 33345689999999999999999999999999999999998 788899999
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
.+..++.++..+.|++.|..|..+.|||+|+||+|.+.+.+ ..++. ...+.+...|.++++.+..... .+.|
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr-~se~T---s~dreiqrTLMeLlnqmdgfd~----l~rV 272 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR-FSEGT---SSDREIQRTLMELLNQMDGFDT----LHRV 272 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE-ecccc---chhHHHHHHHHHHHHhhccchh----cccc
Confidence 99999999999999999999999999999999999998654 22322 2233555555555554443221 2358
Q ss_pred EEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 711 ~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
-+|.|+|+++.|+|+|.|+||+++.+++|.|+...|..|++...+.... ..+-..+.+.+..+||+++|+++.|..|-.
T Consensus 273 k~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag~ 351 (388)
T KOG0651|consen 273 KTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAGM 351 (388)
T ss_pred cEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhcccccc
Confidence 9999999999999999999999999999999999999988754432111 112226678888999999999998887764
Q ss_pred HHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 791 AAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 791 ~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
.++.. ....+..+||.+++..
T Consensus 352 Fa~~~-----------~~~~vl~Ed~~k~vrk 372 (388)
T KOG0651|consen 352 FAIPE-----------ERDEVLHEDFMKLVRK 372 (388)
T ss_pred cccch-----------hhHHHhHHHHHHHHHH
Confidence 44332 2234566777777655
No 71
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.88 E-value=1.3e-21 Score=214.55 Aligned_cols=179 Identities=17% Similarity=0.202 Sum_probs=143.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHh-----cCCeEE
Q 001808 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIV 659 (1010)
Q Consensus 585 ~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~-----~~PsIL 659 (1010)
.++.+|.+++||||||||||.+|+++|++++ ..++.++..++.+.+.|+.++.++++|..|.. .+||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg------~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVL 216 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG------IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCL 216 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC------CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEE
Confidence 5688999999999999999999999999998 78899999999999999999999999999975 469999
Q ss_pred EEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc--cC---CccCCCcEEEEEecCCccccChhhhcCCcccc
Q 001808 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RK---SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF 734 (1010)
Q Consensus 660 ~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~---~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~ 734 (1010)
||||+|.+++.+.. .+.....+.+...|++++|..... .. .......|.||+|+|+++.|+++|+|+|||+.
T Consensus 217 FIDEIDA~~g~r~~---~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 217 FINDLDAGAGRFGT---TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred EEehhhhcCCCCCC---CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 99999999975532 222222334447888888753210 00 01123469999999999999999999999998
Q ss_pred cccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 735 HVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 735 ~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
.+ ..|+.++|.+|++.++++.+ ++...+..++..+.|-
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 65 57999999999999888754 4567778888887763
No 72
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.87 E-value=4.2e-22 Score=228.82 Aligned_cols=167 Identities=38% Similarity=0.618 Sum_probs=153.1
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|++++|+++.++.+.+.+.++..+++.|...++.++.++||+||||||||++|+++|..++.+|+.+.++++..+|.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~ 197 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYI 197 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCc---chHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~---~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|+....++.+|..|+...|+||||||+|.++.+|..+..+ ...+.+.++|.+||+....+++.||+|||+
T Consensus 198 g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~a 277 (364)
T TIGR01242 198 GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPA 277 (364)
T ss_pred hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChh
Confidence 9999999999999999999999999999999887654332 234678889999998877789999999997
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.+++++|+.+
T Consensus 278 l~r~grfd~~i~v~~P~~~ 296 (364)
T TIGR01242 278 LLRPGRFDRIIEVPLPDFE 296 (364)
T ss_pred hcCcccCceEEEeCCcCHH
Confidence 89999999999999864
No 73
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-22 Score=226.42 Aligned_cols=166 Identities=32% Similarity=0.570 Sum_probs=154.2
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
.+.|+|+.|++.+++.+.+.+.||...+..|..+. .+..++||+||||+|||+|++++|.+++..|+.++++.+.++|+
T Consensus 149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred cccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 48999999999999999999999999999998753 44569999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc--cCcEEEEEeCCC-------C
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LTGVFVFAATRL-------E 990 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~--~~~v~viatTn~-------r 990 (1010)
|++|..++.+|.-|+...|.|+|+||+|+++.+|........+|...++|-+++|... .++|+||+|||+ .
T Consensus 228 Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~ 307 (428)
T KOG0740|consen 228 GESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAA 307 (428)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHH
Confidence 9999999999999999999999999999999999877888899999999999998764 469999999999 3
Q ss_pred cCCcceEEEecCCCcc
Q 001808 991 FFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 991 ~gR~d~~l~~~~p~~~ 1006 (1010)
.+||-+.+|+++|+++
T Consensus 308 ~Rrf~kr~yiplPd~e 323 (428)
T KOG0740|consen 308 RRRFVKRLYIPLPDYE 323 (428)
T ss_pred HHHhhceeeecCCCHH
Confidence 3399999999999986
No 74
>CHL00176 ftsH cell division protein; Validated
Probab=99.87 E-value=5.3e-22 Score=239.14 Aligned_cols=166 Identities=31% Similarity=0.553 Sum_probs=150.8
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|+|++|++++++.+.+.+.. .+.++.|...+.+.+.++||+||||||||++|+++|.+++.+++.++++++...|.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~ 257 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV 257 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence 46899999999999999998875 57778888888888999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCC---CcchHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~---~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|.....++.+|..|+...||||||||+|.++.+|+.+. ......++++||.+|||.....+++||+|||+
T Consensus 258 g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~A 337 (638)
T CHL00176 258 GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAA 337 (638)
T ss_pred hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhh
Confidence 99999999999999999999999999999998886532 23345789999999999988889999999999
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.+++++|+.+
T Consensus 338 LlRpGRFd~~I~v~lPd~~ 356 (638)
T CHL00176 338 LLRPGRFDRQITVSLPDRE 356 (638)
T ss_pred hhccccCceEEEECCCCHH
Confidence 89999999999999864
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.84 E-value=4.7e-21 Score=240.73 Aligned_cols=133 Identities=17% Similarity=0.246 Sum_probs=112.6
Q ss_pred cchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhh----------hc----------------
Q 001808 867 PNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY----------IG---------------- 920 (1010)
Q Consensus 867 ~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~----------ig---------------- 920 (1010)
.....+.|++++.|+||+||||||||.||+++|..++.+|+.+++++++++| +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3344567788999999999999999999999999999999999999999765 12
Q ss_pred ---------------ccHH--HHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc---ccCc
Q 001808 921 ---------------ASEQ--AVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---VLTG 980 (1010)
Q Consensus 921 ---------------~se~--~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e---~~~~ 980 (1010)
+.+. .++.+|+.|++++||||||||||+++.+. + ....+++||.+|||.. ..++
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---s---~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---S---NYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---c---ceehHHHHHHHhccccccCCCCC
Confidence 2222 38999999999999999999999998651 1 1124899999999863 4578
Q ss_pred EEEEEeCCC---------CcCCcceEEEecCCCc
Q 001808 981 VFVFAATRL---------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 981 v~viatTn~---------r~gR~d~~l~~~~p~~ 1005 (1010)
|+||||||+ ||||||+.|++++|+.
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~ 1806 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLI 1806 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCc
Confidence 999999999 9999999999999986
No 76
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.83 E-value=1.2e-20 Score=230.09 Aligned_cols=166 Identities=29% Similarity=0.559 Sum_probs=148.4
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
...|+++.|.+..++.+.+.+.+ .+.+..+...+...+.++||+||||||||++|+++|..++.+|+.++++++...|.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 36799999999999999998886 34556666666677788999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCC---CcchHHHHHHHHHHhcCccccCcEEEEEeCCC-------
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATRL------- 989 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~---~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------- 989 (1010)
|..+..++.+|..|+...|||+||||+|.++.+|+.+. .....+++++||.+|||+...++++||||||+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 99999999999999999999999999999999887532 23345799999999999999999999999999
Q ss_pred --CcCCcceEEEecCCCcc
Q 001808 990 --EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 --r~gR~d~~l~~~~p~~~ 1006 (1010)
||||||+.+++++|+.+
T Consensus 307 l~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred HhCCcccceEEEcCCCCHH
Confidence 99999999999999963
No 77
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.77 E-value=2.7e-18 Score=167.47 Aligned_cols=121 Identities=38% Similarity=0.647 Sum_probs=111.0
Q ss_pred EEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCC-CeEEEEeCCCccCCCCCCCCCc
Q 001808 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTG 959 (1010)
Q Consensus 881 iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~-p~VLfiDEid~l~~~R~~~~~~ 959 (1010)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+++++.++.+|++++... |||+||||+|.++++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999999999999999999999998887 9999999999999988556677
Q ss_pred chHHHHHHHHHHhcCcccc-CcEEEEEeCCC---------CcCCcceEEEecC
Q 001808 960 VTDRVVNQFLTELDGVEVL-TGVFVFAATRL---------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 960 ~~~rv~~~lL~~ldg~e~~-~~v~viatTn~---------r~gR~d~~l~~~~ 1002 (1010)
...+++++|+..|+..... .+++||+|||. | +||++.+++++
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7889999999999987765 56999999999 6 99999999975
No 78
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=1e-17 Score=183.72 Aligned_cols=222 Identities=18% Similarity=0.202 Sum_probs=154.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCC---CCCceEEEEcCCCCcHHHHHHHHHHHhccCc-ceeeeEEEE
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHL---PLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFV 627 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l---~~~~~VLL~GppGtGKTtLaraLA~~L~~~~-~~~~~~~~i 627 (1010)
.+++++|++.+++.+.+......... .....|. +...++||+||||||||++|+++|+.+.... .....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~---~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINE---KRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHH---HHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence 35678899998888876653322111 1112222 2345799999999999999999999874322 122467888
Q ss_pred ecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCC
Q 001808 628 CCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGI 707 (1010)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~ 707 (1010)
+|+++.+.+.+.....+.++|..+. ++||||||+|.|.. ..+ ..........|...++....
T Consensus 81 ~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~---~~~----~~~~~~~i~~Ll~~~e~~~~-------- 142 (261)
T TIGR02881 81 ERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR---GGE----KDFGKEAIDTLVKGMEDNRN-------- 142 (261)
T ss_pred cHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc---CCc----cchHHHHHHHHHHHHhccCC--------
Confidence 9999988888888888888887763 57999999999852 111 11112344556666655321
Q ss_pred CcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh---------c
Q 001808 708 GPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK---------C 773 (1010)
Q Consensus 708 ~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~---------t 773 (1010)
.+.+|+++...+ .++|++.+ ||...+++++++.+++.+|++.++...+..++++.+..++.. .
T Consensus 143 -~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~ 219 (261)
T TIGR02881 143 -EFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSR 219 (261)
T ss_pred -CEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCC
Confidence 356666554322 36789998 998889999999999999999999888888888877666432 1
Q ss_pred CCCChhhHHHHHHHHHHHHHHhhc
Q 001808 774 DGYDAYDLEILVDRTVHAAVGRYL 797 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~~~a~~r~~ 797 (1010)
..-+++.++++++.|......|..
T Consensus 220 ~~gn~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 220 EFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHh
Confidence 224678889999988877766654
No 79
>PF09263 PEX-2N: Peroxisome biogenesis factor 1, N-terminal ; InterPro: IPR015343 This domain adopts a Cdc48 domain 2-like fold, with a beta-alpha-beta(3) arrangement. It has been suggested that this domain may be involved in interactions with ubiquitin, ubiquitin-like protein modifiers, or ubiquitin-like domains, such as Ubx. Furthermore, the domain may possess a putative adaptor or substrate binding site, allowing for peroxisomal biogenesis, membrane fusion and protein translocation []. ; PDB: 1WLF_A.
Probab=99.75 E-value=2e-18 Score=146.27 Aligned_cols=80 Identities=26% Similarity=0.430 Sum_probs=54.7
Q ss_pred eEEEEeCCcccceeeCCHHHHHHHhhccccCCCCceEEEEEEeCCCCeEEEEecCCcC----CCCceeecHHHHhhcCCC
Q 001808 3 LEVRVVGGVENCFVSLPLKLIETLESTRSAHLLPQVLSLELRSRSNQRWVVAWSGATS----SSSFIEVARQFAECISLA 78 (1010)
Q Consensus 3 ~~v~~~~~~~~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~~~~~~~~~w~g~~s----~~~~iei~~~~a~~~gl~ 78 (1010)
+.|.|++ .||||++||++|++.|. +.|+++||++|+++.++|++|++.-+ +.+.+|||++||++|||+
T Consensus 4 vtv~f~n-~kdCFL~Lp~~l~~~L~-------L~q~qAvEvsWg~~~pvfLSW~e~r~~~~~~en~~EinrqlgeKLGl~ 75 (87)
T PF09263_consen 4 VTVVFNN-AKDCFLHLPSRLASQLH-------LQQNQAVEVSWGHQSPVFLSWVEGRSFSDQGENVAEINRQLGEKLGLS 75 (87)
T ss_dssp EEEEEE---SSS-EEE-HHHHHHTT---------TT--EEEESSS---EEE-EEE-SS-------EEEEEHHHHHHTT--
T ss_pred EEEEecC-CcceEEECCHHHHHHHH-------HhhCceEEEEeCCCCcEEEEeecccccCCccccHHHHHHHHHHhhCCC
Confidence 5677877 99999999999999998 46899999999997799999997543 248999999999999999
Q ss_pred CCCEEEEEEeec
Q 001808 79 DHTIVQVRVVSN 90 (1010)
Q Consensus 79 ~~~~v~~~~~~~ 90 (1010)
||++|++++|.+
T Consensus 76 dGeQvfLrpCs~ 87 (87)
T PF09263_consen 76 DGEQVFLRPCSH 87 (87)
T ss_dssp TT-EEEEEE-S-
T ss_pred cCCeEeeeeCCC
Confidence 999999999863
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=5.1e-17 Score=179.75 Aligned_cols=220 Identities=17% Similarity=0.171 Sum_probs=155.9
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCC---CCceEEEEcCCCCcHHHHHHHHHHHhccCcce-eeeEEEEecc
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLP---LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-VAHIVFVCCS 630 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~---~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~-~~~~~~i~~s 630 (1010)
+++|++.+++++.+.......+ ..+...++. ++.++||+||||||||++|+++|+.+...... ..+++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~---~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVE---RLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHH---HHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH
Confidence 5788888888877755443221 233344444 34589999999999999999999988533221 2368888888
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
++.+.+.+.....+..+|+.+ .+++|||||++.+.+.+. + ..........|...++... ..+
T Consensus 100 ~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~----~~~~~~~~~~Ll~~le~~~---------~~~ 161 (284)
T TIGR02880 100 DLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--E----RDYGQEAIEILLQVMENQR---------DDL 161 (284)
T ss_pred HHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--c----cchHHHHHHHHHHHHhcCC---------CCE
Confidence 877666665556667777765 347999999999853211 1 1122355566667666432 247
Q ss_pred EEEEecCCc--c---ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh-------cCCCCh
Q 001808 711 AFVASAQSL--E---KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK-------CDGYDA 778 (1010)
Q Consensus 711 ~vIattn~~--~---~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~-------t~g~s~ 778 (1010)
++|++++.. + .++|+|.+ ||...+++|+++.+++.+|++.++.+....++++.+..++.. ..--++
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~ 239 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANA 239 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChH
Confidence 777776542 2 24789999 999999999999999999999999987777888877666554 222368
Q ss_pred hhHHHHHHHHHHHHHHhhc
Q 001808 779 YDLEILVDRTVHAAVGRYL 797 (1010)
Q Consensus 779 ~DL~~Lv~~A~~~a~~r~~ 797 (1010)
+++++++++++.....|..
T Consensus 240 R~lrn~ve~~~~~~~~r~~ 258 (284)
T TIGR02880 240 RSIRNAIDRARLRQANRLF 258 (284)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999888777765
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=4.6e-17 Score=180.00 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=153.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCC---CceEEEEcCCCCcHHHHHHHHHHHhccCcc-eeeeEEEEecc
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPL---PGHILIHGPPGSGKTSLAKAVAKSLEHHKD-LVAHIVFVCCS 630 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~---~~~VLL~GppGtGKTtLaraLA~~L~~~~~-~~~~~~~i~~s 630 (1010)
+++|++.++++|.+.+..... ...+...++.+ +.++||+||||||||++|+++|+.+..... ...++++++++
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~---~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLI---DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHH---HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 678898888887775543221 12233344433 346999999999999999999998753221 12457888888
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
++.+.+.+........++..+ .++||||||+|.+.... ... .........|...|+... ..+
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~--~~~----~~~~e~~~~L~~~me~~~---------~~~ 162 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPD--NER----DYGSEAIEILLQVMENQR---------DDL 162 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCC--Ccc----chHHHHHHHHHHHHhcCC---------CCE
Confidence 887766665555566677665 34799999999986321 111 122355666777776432 147
Q ss_pred EEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh------cCCC-Ch
Q 001808 711 AFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK------CDGY-DA 778 (1010)
Q Consensus 711 ~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~------t~g~-s~ 778 (1010)
++|++++... .++|.|.+ ||+.+++|++|+.+++.+|++.++.+.+..++++....+... ...| ++
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNa 240 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANA 240 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccH
Confidence 7777765422 24689999 999999999999999999999999988877777755443332 1333 48
Q ss_pred hhHHHHHHHHHHHHHHhhcc
Q 001808 779 YDLEILVDRTVHAAVGRYLH 798 (1010)
Q Consensus 779 ~DL~~Lv~~A~~~a~~r~~~ 798 (1010)
++++++++++......|...
T Consensus 241 R~vrn~ve~~~~~~~~r~~~ 260 (287)
T CHL00181 241 RSVRNALDRARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 99999999998888777653
No 82
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3e-15 Score=181.90 Aligned_cols=360 Identities=19% Similarity=0.247 Sum_probs=207.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCc----ceeeeEEEEeccccc--CCchhhHHHHHHHHHHHHH-hcCCeEEEEcc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEAL-DHAPSIVIFDN 663 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~i~~s~l~--~~~~~~~~~~l~~~f~~a~-~~~PsIL~IDE 663 (1010)
++-+|+|.||+|||.++.-+|+.+..+. .....++.++...+. ..+.++++.+++.+..++. .....||||||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfige 288 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGE 288 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 5678999999999999999999885432 233566777776554 4566889999999999887 44667999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcc-----ccChhhhcCCcccccccC
Q 001808 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQL 738 (1010)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l 738 (1010)
++.+.+.... ++ .....+.|...+.. +.+.+|++|+..+ .-+|++.+ ||+ .+.+
T Consensus 289 lh~lvg~g~~-~~------~~d~~nlLkp~L~r-----------g~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v 347 (898)
T KOG1051|consen 289 LHWLVGSGSN-YG------AIDAANLLKPLLAR-----------GGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLV 347 (898)
T ss_pred eeeeecCCCc-ch------HHHHHHhhHHHHhc-----------CCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEe
Confidence 9999853332 11 12333333333221 2388999887433 24789998 998 6788
Q ss_pred CCCcHHHHHHHHHHHhhh----cccccChHHHHhHhhhc-----CCCChhhHHHHHHHHHHHHHH---------------
Q 001808 739 PAPAASERKAILEHEIQR----RSLECSDEILLDVASKC-----DGYDAYDLEILVDRTVHAAVG--------------- 794 (1010)
Q Consensus 739 ~~P~~~eR~~IL~~~l~~----~~~~~~~~~l~~la~~t-----~g~s~~DL~~Lv~~A~~~a~~--------------- 794 (1010)
+.|+.+....||...-.. ++..+++..+...+... ..+-+.-...+++.|+.....
T Consensus 348 ~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~ 427 (898)
T KOG1051|consen 348 PIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERV 427 (898)
T ss_pred ccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhh
Confidence 899988777777765443 22223332221111111 111222222222222211000
Q ss_pred -------------hhc----c-----cCC-----------ccccc---------ccCcccccc-hhhhhhcc--------
Q 001808 795 -------------RYL----H-----SDS-----------SFEKH---------IKPTLVRDD-FSQAMHEF-------- 823 (1010)
Q Consensus 795 -------------r~~----~-----~~~-----------~~~~~---------~~~~lt~eD-f~~Al~~~-------- 823 (1010)
... . ... ..... ....+.... +.++.+..
T Consensus 428 ~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l 507 (898)
T KOG1051|consen 428 DIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDL 507 (898)
T ss_pred hhhhHHHHHHHHHhhhhhhccccccccccccccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhc
Confidence 000 0 000 00000 000000000 00000000
Q ss_pred ------------------ccccccccccccCCCC----------------CCCcCCCCchhhHHHHHHHHhhccCCCcch
Q 001808 824 ------------------LPVAMRDITKTSAEGG----------------RSGWDDVGGLTDIQNAIKEMIELPSKFPNI 869 (1010)
Q Consensus 824 ------------------~P~~lr~v~~~~~~~~----------------~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~ 869 (1010)
.|.....+........ ...-+.|.|++++...+.+++.....-.
T Consensus 508 ~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl-- 585 (898)
T KOG1051|consen 508 RYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGL-- 585 (898)
T ss_pred cccccchhhhhhcccccCCccchhhhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhccc--
Confidence 0000000000000000 0011235566666666666665432100
Q ss_pred hccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhh---------hhhcccHHHHHHHHHHHhcCC
Q 001808 870 FAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN---------KYIGASEQAVRDIFSKATAAA 937 (1010)
Q Consensus 870 ~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~---------~~ig~se~~l~~lf~~A~~~~ 937 (1010)
.-+ .+...+||.||.|+|||.||+++|..+ ...++.++++++.. +|+|..+ ..++....+..+
T Consensus 586 --~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP 660 (898)
T KOG1051|consen 586 --KDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRP 660 (898)
T ss_pred --CCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCC
Confidence 001 367789999999999999999999988 35699999997432 3666554 457888888999
Q ss_pred CeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcccc---------CcEEEEEeCCC
Q 001808 938 PCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVL---------TGVFVFAATRL 989 (1010)
Q Consensus 938 p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~---------~~v~viatTn~ 989 (1010)
.+|++|||||... ..+.+.|++.||..+-. .+++||+|+|.
T Consensus 661 ~sVVLfdeIEkAh-----------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 661 YSVVLFEEIEKAH-----------PDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred ceEEEEechhhcC-----------HHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 9999999999984 56999999999954422 47999999998
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.69 E-value=2.8e-16 Score=153.22 Aligned_cols=130 Identities=30% Similarity=0.486 Sum_probs=110.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcC-CeEEEEccchhhhcCC
Q 001808 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHA-PSIVIFDNLDSIISSS 671 (1010)
Q Consensus 593 VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~ 671 (1010)
|||+||||||||++++.+|+.++ .+++.+++..+.+...+...+.+..+|..+.... |+||||||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------cccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 69999999999999999999997 8899999999998888889999999999998887 9999999999998643
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCC
Q 001808 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLP 739 (1010)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~ 739 (1010)
..........+...|...++...... .++.+|+++|..+.+++.+.+ +||+..+++|
T Consensus 75 ----~~~~~~~~~~~~~~L~~~l~~~~~~~------~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 ----QPSSSSFEQRLLNQLLSLLDNPSSKN------SRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp ----STSSSHHHHHHHHHHHHHHHTTTTTS------SSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ----ccccccccccccceeeeccccccccc------ccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 22244455678888888888766542 259999999999999999997 7999988876
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.68 E-value=1.6e-16 Score=175.61 Aligned_cols=156 Identities=17% Similarity=0.206 Sum_probs=125.3
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCC---CCceEEEeCCCCCChHHHHHHHHHHc-------CCcEEEEecc
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGP 912 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr---~~~~iLL~GppGtGKT~lAk~lA~~~-------g~~~i~v~~~ 912 (1010)
+.+++|++.+|+.+.+.+.+. .+...+...++. ++.++||+||||||||++|+++|..+ ..+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 457999999999999998773 344444444442 35579999999999999999999876 2368999999
Q ss_pred hhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC---
Q 001808 913 ELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL--- 989 (1010)
Q Consensus 913 el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~--- 989 (1010)
++.+.|+|+++..++.+|+.|.. +||||||+|.+...++. ..+...+++.|++.|+ +..++++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me--~~~~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVME--NQRDDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc--cchHHHHHHHHHHHHh--cCCCCEEEEEeCCcHHH
Confidence 99999999999888999998754 59999999999765432 3456889999999998 45567888888874
Q ss_pred ---------CcCCcceEEEecCCCcc
Q 001808 990 ---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 ---------r~gR~d~~l~~~~p~~~ 1006 (1010)
..+||+..++|+.++.+
T Consensus 174 ~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 174 DKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred HHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 35799999999988753
No 85
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.8e-17 Score=172.78 Aligned_cols=167 Identities=22% Similarity=0.333 Sum_probs=131.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCC-CCCCceEEEeCCCCCChHHHHHHHHHHcC---------CcEEEEe
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAP-LRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVK 910 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~-lr~~~~iLL~GppGtGKT~lAk~lA~~~g---------~~~i~v~ 910 (1010)
..|+.+.--..+|+.+..+....+.+.+--.+.. +....-+||.||||||||+|+|++|+.+. ..+++++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 4588877777888888777664433333222211 23345689999999999999999999983 4589999
Q ss_pred cchhhhhhhcccHHHHHHHHHHHhcC---C--CeEEEEeCCCccCCCCCCC----CCcchHHHHHHHHHHhcCccccCcE
Q 001808 911 GPELLNKYIGASEQAVRDIFSKATAA---A--PCLLFFDEFDSIAPKRGHD----NTGVTDRVVNQFLTELDGVEVLTGV 981 (1010)
Q Consensus 911 ~~el~~~~ig~se~~l~~lf~~A~~~---~--p~VLfiDEid~l~~~R~~~----~~~~~~rv~~~lL~~ldg~e~~~~v 981 (1010)
...+++||.+++.+.+..+|++.... + --.++|||+++++..|... +-.-.-||+|++|+|||.+..+.+|
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999999987542 2 2366799999999988432 2223459999999999999999999
Q ss_pred EEEEeCCC-------CcCCcceEEEecCCCcce
Q 001808 982 FVFAATRL-------EFFHYNVLLFCSFIIFLI 1007 (1010)
Q Consensus 982 ~viatTn~-------r~gR~d~~l~~~~p~~~~ 1007 (1010)
+|+||+|. +-.|-|-..|++.|+.+-
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHH
Confidence 99999999 888999999999998654
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.65 E-value=5.2e-16 Score=171.74 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=124.4
Q ss_pred CCCchhhHHHHHHHHhhccCCCcchhccCCCC---CCceEEEeCCCCCChHHHHHHHHHHc-------CCcEEEEecchh
Q 001808 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLR---LRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKGPEL 914 (1010)
Q Consensus 845 dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr---~~~~iLL~GppGtGKT~lAk~lA~~~-------g~~~i~v~~~el 914 (1010)
+++|++++|+.+.+.+.+ ..+++.+.+.++. ++.+++|+||||||||++|+++|..+ ..+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999999887 4566666666654 45689999999999999999999876 236999999999
Q ss_pred hhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC-----
Q 001808 915 LNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL----- 989 (1010)
Q Consensus 915 ~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~----- 989 (1010)
.+.|.|+++..++.+|++|.. ++|||||++.+.+.++ ...+..++.+.|++.|+ ....+++||+|++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le--~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVME--NQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHh--cCCCCEEEEEeCCcHHHHH
Confidence 999999999999999998754 5999999999875443 33456789999999998 45567888888764
Q ss_pred -------CcCCcceEEEecCCCc
Q 001808 990 -------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 990 -------r~gR~d~~l~~~~p~~ 1005 (1010)
...||+..+.|+.++.
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCH
Confidence 3468888888887653
No 87
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1e-15 Score=162.70 Aligned_cols=250 Identities=19% Similarity=0.219 Sum_probs=164.0
Q ss_pred ccccccccccchhhHHHHHHHHHHhcC-CCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccC---cceeeeE
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLS-PDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KDLVAHI 624 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~-~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~---~~~~~~~ 624 (1010)
|+...++|+--...++.+.......+. .... -...-+.-++-+||+||||||||+|++++|+.|.-+ .....+.
T Consensus 137 F~glWEsLiyds~lK~~ll~Ya~s~l~fsek~--vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~l 214 (423)
T KOG0744|consen 137 FDGLWESLIYDSNLKERLLSYAASALLFSEKK--VNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQL 214 (423)
T ss_pred hhhhHHHHhhcccHHHHHHHHHHHHHHHHhcC--CCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceE
Confidence 333344555444455666665533221 1100 011112335669999999999999999999998632 2223568
Q ss_pred EEEecccccCCchhhHHHHHHHHHHHHHhc---CC--eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc
Q 001808 625 VFVCCSRLSLEKGPIIRQALSNFISEALDH---AP--SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (1010)
Q Consensus 625 ~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~---~P--sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (1010)
++++|..+..+|+++..+.+..+|+..... .. ..++|||+++|...|........+....++.+.++..+|++..
T Consensus 215 iEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~ 294 (423)
T KOG0744|consen 215 IEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR 294 (423)
T ss_pred EEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc
Confidence 899999999999999988888888876542 22 2567899999986553322222333344777888888898765
Q ss_pred ccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhc---ccccC--------------
Q 001808 700 KRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRR---SLECS-------------- 762 (1010)
Q Consensus 700 ~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~---~~~~~-------------- 762 (1010)
.. ++++++|+|-.+.+|.+|.. |-+-++++++|+.+.+.+|++..+... ++-..
T Consensus 295 ~~-------NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~ 365 (423)
T KOG0744|consen 295 YP-------NVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQ 365 (423)
T ss_pred CC-------CEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhh
Confidence 43 69999999999999999998 899899999999999999999877642 11110
Q ss_pred hHHHHhHhhh-cCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 763 DEILLDVASK-CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 763 ~~~l~~la~~-t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
+.....++.. +.|.++|-|+.|---| |..+. ...+++.++|..|+..
T Consensus 366 ~~~~~~~~~~~~~gLSGRtlrkLP~La-ha~y~------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 366 KALRNILIELSTVGLSGRTLRKLPLLA-HAEYF------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred HhHHHHHHHHhhcCCccchHhhhhHHH-HHhcc------------CCCccChHHHHHHHHH
Confidence 1111122222 4788888777663322 22211 1246777788777654
No 88
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.1e-15 Score=167.45 Aligned_cols=208 Identities=15% Similarity=0.208 Sum_probs=146.4
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
.+++.+.--...++.|++.+..+.. ...+|.+.|.+-.+|.|||||||||||+++.|+|++|. ..++-++.+
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k--~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~------ydIydLeLt 269 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIK--GKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN------YDIYDLELT 269 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHh--cchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC------CceEEeeec
Confidence 5566666444577788888888765 45799999999999999999999999999999999998 556666655
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCC----CCCchhHHHHHHHHHHHHHhhccccCCccC
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEG----SQPSTSVIALTKFLVDIMDEYGEKRKSSCG 706 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~----~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~ 706 (1010)
...... + ++.++... ...+||+|+|||+-+..+..... .+. ....-.+..|++.+|.+-+...
T Consensus 270 ~v~~n~--d----Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~-~~~~VTlSGLLNfiDGlwSscg---- 336 (457)
T KOG0743|consen 270 EVKLDS--D----LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEG-DLSRVTLSGLLNFLDGLWSSCG---- 336 (457)
T ss_pred cccCcH--H----HHHHHHhC--CCCcEEEEeecccccccccccccccccccC-CcceeehHHhhhhhccccccCC----
Confidence 544332 2 44444433 45689999999997642222111 111 1112334556677777654322
Q ss_pred CCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCC--CChhhHHH
Q 001808 707 IGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG--YDAYDLEI 783 (1010)
Q Consensus 707 ~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g--~s~~DL~~ 783 (1010)
...++|+|||..+.|||+|.|+||++.+++++..+.++-..++..++.-.. +...+..+.+..++ .+|+|+..
T Consensus 337 -~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 337 -DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred -CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHH
Confidence 247899999999999999999999999999999999999999998876422 23334444444333 37777643
No 89
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.63 E-value=7.8e-15 Score=152.28 Aligned_cols=194 Identities=17% Similarity=0.259 Sum_probs=123.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
.+++.+|.+..++.+.-.+...... ..+..++|||||||+||||||+.+|++++ ..+..++...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r----------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~------~~~~~~sg~~ 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR----------GEALDHMLFYGPPGLGKTTLARIIANELG------VNFKITSGPA 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT----------TS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEECCC
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc----------CCCcceEEEECCCccchhHHHHHHHhccC------CCeEeccchh
Confidence 3566778877776654444332211 12235799999999999999999999998 5566666544
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-----ccCC---
Q 001808 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRKS--- 703 (1010)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~~~--- 703 (1010)
+.. .+++...+ ... ....||||||+|.+- ....+.|+..|+.+.- ....
T Consensus 86 i~k--~~dl~~il----~~l--~~~~ILFIDEIHRln---------------k~~qe~LlpamEd~~idiiiG~g~~ar~ 142 (233)
T PF05496_consen 86 IEK--AGDLAAIL----TNL--KEGDILFIDEIHRLN---------------KAQQEILLPAMEDGKIDIIIGKGPNARS 142 (233)
T ss_dssp --S--CHHHHHHH----HT----TT-EEEECTCCC-----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BE
T ss_pred hhh--HHHHHHHH----Hhc--CCCcEEEEechhhcc---------------HHHHHHHHHHhccCeEEEEeccccccce
Confidence 322 23333332 222 356799999999984 2455667777775431 1110
Q ss_pred -ccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHH
Q 001808 704 -SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1010)
Q Consensus 704 -~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~ 782 (1010)
.....+..+|++|++...+.+.|+. ||....++..++.++..+|++.-....++.++++....+|..+.| +|+=..
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAn 219 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIAN 219 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHH
Confidence 1122468999999999999999999 999888999999999999999888888899999999999999998 665544
Q ss_pred HHHHH
Q 001808 783 ILVDR 787 (1010)
Q Consensus 783 ~Lv~~ 787 (1010)
+++++
T Consensus 220 rll~r 224 (233)
T PF05496_consen 220 RLLRR 224 (233)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 90
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2e-14 Score=156.49 Aligned_cols=208 Identities=17% Similarity=0.258 Sum_probs=134.4
Q ss_pred chhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchh
Q 001808 559 MGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP 638 (1010)
Q Consensus 559 ~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~ 638 (1010)
+...++.=++.|....... ...-.+=++||+|||||||||++||.||+.-+.+ +-.....+..-....
T Consensus 359 L~psLe~Rie~lA~aTaNT------K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlD------YA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 359 LHPSLEKRIEDLAIATANT------KKHQAPFRNILFYGPPGTGKTMFARELARHSGLD------YAIMTGGDVAPLGAQ 426 (630)
T ss_pred cCHHHHHHHHHHHHHhccc------ccccchhhheeeeCCCCCCchHHHHHHHhhcCCc------eehhcCCCccccchH
Confidence 4455555555554433211 1122233679999999999999999999987622 222333333322111
Q ss_pred hHHHHHHHHHHHHHhcC-CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecC
Q 001808 639 IIRQALSNFISEALDHA-PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ 717 (1010)
Q Consensus 639 ~~~~~l~~~f~~a~~~~-PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn 717 (1010)
. -..|.++|+=+.... .-+|||||+|.++..+...+- ++..+. .|..++.+-... + ..++++.++|
T Consensus 427 a-VTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym---SEaqRs---aLNAlLfRTGdq---S---rdivLvlAtN 493 (630)
T KOG0742|consen 427 A-VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM---SEAQRS---ALNALLFRTGDQ---S---RDIVLVLATN 493 (630)
T ss_pred H-HHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh---cHHHHH---HHHHHHHHhccc---c---cceEEEeccC
Confidence 1 234667776665433 448899999999865554432 222222 222333222211 1 1589999999
Q ss_pred CccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcc----------------------cc----cChHHHHhHhh
Q 001808 718 SLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRS----------------------LE----CSDEILLDVAS 771 (1010)
Q Consensus 718 ~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~----------------------~~----~~~~~l~~la~ 771 (1010)
.+.++|.++.. ||+..++||.|..++|..+|..++.++- +. ..+..+...|.
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 99999999998 9999999999999999999998877532 11 12334678899
Q ss_pred hcCCCChhhHHHHHHHHHHHHH
Q 001808 772 KCDGYDAYDLEILVDRTVHAAV 793 (1010)
Q Consensus 772 ~t~g~s~~DL~~Lv~~A~~~a~ 793 (1010)
.|+||++++|..|+-.....++
T Consensus 572 kTeGfSGREiakLva~vQAavY 593 (630)
T KOG0742|consen 572 KTEGFSGREIAKLVASVQAAVY 593 (630)
T ss_pred hccCCcHHHHHHHHHHHHHHHh
Confidence 9999999999998765443333
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.60 E-value=4.6e-15 Score=162.83 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=116.6
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCC---CCCceEEEeCCCCCChHHHHHHHHHHc-------CCcEEEEec
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFISVKG 911 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~l---r~~~~iLL~GppGtGKT~lAk~lA~~~-------g~~~i~v~~ 911 (1010)
.++++.|++.+|+.+.+.+.|+.....+.. .++ ....+++|+||||||||++|+++|..+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~-~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKE-EGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 467899999999999999887744422222 222 234689999999999999999999874 347889999
Q ss_pred chhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC--
Q 001808 912 PELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL-- 989 (1010)
Q Consensus 912 ~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~-- 989 (1010)
+++.++|+|+++..++++|+.|.. +||||||+|.+.. + ++.......++.|++.|+ +....+++|+++..
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~~---~VL~IDE~~~L~~--~-~~~~~~~~~i~~Ll~~~e--~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKALG---GVLFIDEAYSLAR--G-GEKDFGKEAIDTLVKGME--DNRNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhccC---CEEEEechhhhcc--C-CccchHHHHHHHHHHHHh--ccCCCEEEEecCCcch
Confidence 999999999999999999998753 5999999999963 2 222345678999999998 34455555555432
Q ss_pred ----------CcCCcceEEEecCCC
Q 001808 990 ----------EFFHYNVLLFCSFII 1004 (1010)
Q Consensus 990 ----------r~gR~d~~l~~~~p~ 1004 (1010)
...||+..+.|+.++
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~ 179 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYT 179 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCC
Confidence 346887777776554
No 92
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.3e-14 Score=162.51 Aligned_cols=159 Identities=17% Similarity=0.285 Sum_probs=127.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhc
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig 920 (1010)
..++.+.--.+.|+.+.+-+....+..+.+.+.|...+.|.|||||||||||++..|+|+.++.+++-++.++. +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----K 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----c
Confidence 45666666678888888888888888899999999999999999999999999999999999999999887663 2
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCC------Cc-chHHHHHHHHHHhcCccccC--cEEEEEeCCC--
Q 001808 921 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN------TG-VTDRVVNQFLTELDGVEVLT--GVFVFAATRL-- 989 (1010)
Q Consensus 921 ~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~------~~-~~~rv~~~lL~~ldg~e~~~--~v~viatTn~-- 989 (1010)
.... ++.++..+ ...+||+|++||..+-.|+... .+ ...-.+..||+++||+-+.. .-+||.|||.
T Consensus 273 ~n~d-Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2333 88888775 3457999999999877443211 11 12246889999999997654 6788888888
Q ss_pred -------CcCCcceEEEecCCCcce
Q 001808 990 -------EFFHYNVLLFCSFIIFLI 1007 (1010)
Q Consensus 990 -------r~gR~d~~l~~~~p~~~~ 1007 (1010)
||||.|.++|++..+++.
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~ 374 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEA 374 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHH
Confidence 999999999999887754
No 93
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=1.4e-13 Score=156.12 Aligned_cols=218 Identities=17% Similarity=0.241 Sum_probs=146.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
.+.++.|.+..++.+...+...... ..++.++||+||||||||++|+++|++++. .+..++...
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~GppG~GKT~la~~ia~~l~~------~~~~~~~~~ 86 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKR----------GEALDHVLLYGPPGLGKTTLANIIANEMGV------NIRITSGPA 86 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhc----------CCCCCcEEEECCCCccHHHHHHHHHHHhCC------CeEEEeccc
Confidence 4667888888887776655433211 233567999999999999999999999873 333344333
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-----cc----C
Q 001808 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KR----K 702 (1010)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~----~ 702 (1010)
+.. .+. +..++... ..+.+|||||+|.+.. ...+.|...++.... .. .
T Consensus 87 ~~~--~~~----l~~~l~~l--~~~~vl~IDEi~~l~~---------------~~~e~l~~~~e~~~~~~~l~~~~~~~~ 143 (328)
T PRK00080 87 LEK--PGD----LAAILTNL--EEGDVLFIDEIHRLSP---------------VVEEILYPAMEDFRLDIMIGKGPAARS 143 (328)
T ss_pred ccC--hHH----HHHHHHhc--ccCCEEEEecHhhcch---------------HHHHHHHHHHHhcceeeeeccCccccc
Confidence 221 122 23333322 4578999999999841 111223444443210 00 0
Q ss_pred CccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHH
Q 001808 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1010)
Q Consensus 703 ~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~ 782 (1010)
......++.+|++++....+++.+.+ ||...+.+++|+.+++.+|++..+...++.++++.+..++..+.| +++.+.
T Consensus 144 ~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~ 220 (328)
T PRK00080 144 IRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIAN 220 (328)
T ss_pred eeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHH
Confidence 00112357889999999999999988 998889999999999999999999888899999999999999998 457777
Q ss_pred HHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 783 ~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
.+++++.+.+..+ ....++.+++..++..
T Consensus 221 ~~l~~~~~~a~~~-----------~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 221 RLLRRVRDFAQVK-----------GDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHH
Confidence 7777665544322 1134666666666543
No 94
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.54 E-value=2.6e-13 Score=152.50 Aligned_cols=218 Identities=18% Similarity=0.237 Sum_probs=143.3
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
++.++.|.+..++.+...+...... ...+.+++|+||||||||++++++|++++. .+..+.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~----------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------~~~~~~~~~ 65 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR----------QEALDHLLLYGPPGLGKTTLAHIIANEMGV------NLKITSGPA 65 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc----------CCCCCeEEEECCCCCCHHHHHHHHHHHhCC------CEEEeccch
Confidence 3567788888888777666433221 123467999999999999999999999873 233333322
Q ss_pred ccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc---------cC
Q 001808 632 LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---------RK 702 (1010)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---------~~ 702 (1010)
... .+.+. ..+.. ...+.+|||||+|.+.+ ...+.|...++..... ..
T Consensus 66 ~~~--~~~l~----~~l~~--~~~~~vl~iDEi~~l~~---------------~~~e~l~~~~~~~~~~~v~~~~~~~~~ 122 (305)
T TIGR00635 66 LEK--PGDLA----AILTN--LEEGDVLFIDEIHRLSP---------------AVEELLYPAMEDFRLDIVIGKGPSARS 122 (305)
T ss_pred hcC--chhHH----HHHHh--cccCCEEEEehHhhhCH---------------HHHHHhhHHHhhhheeeeeccCccccc
Confidence 211 12222 22222 24567999999999841 1122244444332210 00
Q ss_pred CccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHH
Q 001808 703 SSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLE 782 (1010)
Q Consensus 703 ~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~ 782 (1010)
......++.+|++++....+++++.+ ||...+.+++|+.+++.++++..+...+..++++.+..++..+.|+ ++.+.
T Consensus 123 ~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~ 199 (305)
T TIGR00635 123 VRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIAN 199 (305)
T ss_pred eeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHH
Confidence 00112357889999998899999998 9987889999999999999999888888889999999999999885 46677
Q ss_pred HHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 783 ILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 783 ~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
.+++.+...+... ....++.+.+..++..
T Consensus 200 ~ll~~~~~~a~~~-----------~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 200 RLLRRVRDFAQVR-----------GQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHH
Confidence 7777654333211 1133666666666654
No 95
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.52 E-value=3.3e-13 Score=142.30 Aligned_cols=198 Identities=19% Similarity=0.297 Sum_probs=138.9
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccc
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1010)
+.+.+|..+.++++.=.+..... ......|+||+||||.||||||+.+|++++. ++...+...+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~----------r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv------n~k~tsGp~l 88 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK----------RGEALDHVLLFGPPGLGKTTLAHIIANELGV------NLKITSGPAL 88 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh----------cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC------CeEecccccc
Confidence 45566776666655444433221 1233478999999999999999999999983 3333322222
Q ss_pred cCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-----ccCC----
Q 001808 633 SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-----KRKS---- 703 (1010)
Q Consensus 633 ~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-----~~~~---- 703 (1010)
...+++.. ++... ...+||||||+|.+.+ .+-+.|...|+.+.- ++..
T Consensus 89 --eK~gDlaa----iLt~L--e~~DVLFIDEIHrl~~---------------~vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 89 --EKPGDLAA----ILTNL--EEGDVLFIDEIHRLSP---------------AVEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred --cChhhHHH----HHhcC--CcCCeEEEehhhhcCh---------------hHHHHhhhhhhheeEEEEEccCCccceE
Confidence 22333333 23322 3457999999999852 444556677776541 1111
Q ss_pred ccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHH
Q 001808 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (1010)
Q Consensus 704 ~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~ 783 (1010)
.....++.+|++|++...+...|+. ||....++..++.++..+|+.......++.++++....+|++..| +|+=...
T Consensus 146 ~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnR 222 (332)
T COG2255 146 RLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANR 222 (332)
T ss_pred eccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHH
Confidence 1234589999999999999999999 999999999999999999999988888899999999999999888 6665556
Q ss_pred HHHHHHHHH
Q 001808 784 LVDRTVHAA 792 (1010)
Q Consensus 784 Lv~~A~~~a 792 (1010)
|+++....|
T Consensus 223 LLrRVRDfa 231 (332)
T COG2255 223 LLRRVRDFA 231 (332)
T ss_pred HHHHHHHHH
Confidence 665544333
No 96
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.50 E-value=4.7e-13 Score=167.67 Aligned_cols=213 Identities=21% Similarity=0.318 Sum_probs=138.9
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc-
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~- 633 (1010)
.+.|++.+++.+.+.+...... +...+.++||+||||||||++|+++|+.++ ..+..+++..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~---------~~~~~~~lll~GppG~GKT~lAk~iA~~l~------~~~~~i~~~~~~~ 385 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLR---------GKMKGPILCLVGPPGVGKTSLGKSIAKALN------RKFVRFSLGGVRD 385 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhh---------cCCCCceEEEECCCCCCHHHHHHHHHHHhc------CCeEEEeCCCccc
Confidence 3567788888877766432110 112234699999999999999999999997 455666554321
Q ss_pred --------CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh-----hccc
Q 001808 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEK 700 (1010)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-----~~~~ 700 (1010)
..+.+...+.+.+.|..+....| |+||||+|.+.+. ..+ ..... |++.++. +...
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~---~~~----~~~~a----Ll~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSS---FRG----DPASA----LLEVLDPEQNNAFSDH 453 (775)
T ss_pred HHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCc---cCC----CHHHH----HHHhcCHHhcCccccc
Confidence 12233333445556666654455 8999999999631 111 11223 3333332 1000
Q ss_pred -cCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhh-----hc-----ccccChHHHHhH
Q 001808 701 -RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RR-----SLECSDEILLDV 769 (1010)
Q Consensus 701 -~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~-----~~-----~~~~~~~~l~~l 769 (1010)
........++++|+|+|..+.++++|++ ||. .++++.|+.+++.+|++.++. .+ .+.++++.+..+
T Consensus 454 ~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i 530 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLL 530 (775)
T ss_pred cCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHH
Confidence 0001122468999999999999999999 996 789999999999999987652 22 345788888887
Q ss_pred hhh-cCCCChhhHHHHHHHHHHHHHHhhc
Q 001808 770 ASK-CDGYDAYDLEILVDRTVHAAVGRYL 797 (1010)
Q Consensus 770 a~~-t~g~s~~DL~~Lv~~A~~~a~~r~~ 797 (1010)
+.. +..+..++|+..+++.+..+..+..
T Consensus 531 ~~~~~~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 531 IKYYTREAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred HHhcChhcCChHHHHHHHHHHHHHHHHHH
Confidence 764 4567778888888877766655443
No 97
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.6e-12 Score=150.49 Aligned_cols=194 Identities=18% Similarity=0.247 Sum_probs=134.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
.|.+++|.+..+..+...+.. ...+..+||+||+||||||+|+.+|+.+.....
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~--------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKS--------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 356777877777665554422 112245899999999999999999999864311
Q ss_pred ------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
....++.++... ....+.++..+..+..........|+||||+|++-. ...+.|+..
T Consensus 82 ~~i~~g~~~dviEIdaas--~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~---------------~A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS--NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD---------------QSFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh--cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH---------------HHHHHHHHH
Confidence 001233444322 122344444444433333334556999999999841 233445555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++.. ..+++|.+|+.++.+++.+++ |.. .+.|.+++.++..+.++..+...++.++++.+..++...
T Consensus 145 LEEPp---------~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 145 LEEPP---------AHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred hhcCC---------CceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 55432 258888888889999999999 775 688999999999999999998888999999999999999
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
+| +.||...++++++
T Consensus 213 ~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 213 DG-SVRDMLSFMEQAI 227 (484)
T ss_pred CC-hHHHHHHHHHHHH
Confidence 88 6778777777765
No 98
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.8e-12 Score=153.24 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=137.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
+|++++|.+..++.+.+.+.. ...+..+||+||+|+||||+++.+|+.+......
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~--------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDG--------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 467788888877777665421 1123457999999999999999999998642110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...+++++..+ ....++++..+.............|+||||+|+|-. .-.+.|+..
T Consensus 80 r~I~~G~h~DviEIDAas--~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~---------------~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS--NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN---------------HAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc--cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH---------------HHHHHHHHH
Confidence 01244444432 233445555554433222223456999999999841 223445556
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.||.+|+..+.|.+.+++ |+. .|.|..++.++..++|+.++...++.++++.+..|++.+
T Consensus 143 LEEPP~---------~v~FILaTtd~~KIp~TIrS--RCq-~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 143 LEEPPP---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred HHhcCC---------CeEEEEEECChhhccchhhh--heE-EEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 48889999999999999999 775 889999999999999999998888999999999999999
Q ss_pred CCCChhhHHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~~ 790 (1010)
+| +.+|..+++++++.
T Consensus 211 ~G-smRdALsLLdQAia 226 (830)
T PRK07003 211 QG-SMRDALSLTDQAIA 226 (830)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 88 56777777776653
No 99
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.6e-12 Score=152.00 Aligned_cols=190 Identities=23% Similarity=0.317 Sum_probs=133.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc-
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS- 633 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~- 633 (1010)
+-.|++++++.|++.+....... -..+.-++|+||||+|||+|++.+|+.++ ..|+.++...+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~---------~~kGpILcLVGPPGVGKTSLgkSIA~al~------RkfvR~sLGGvrD 388 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTK---------KLKGPILCLVGPPGVGKTSLGKSIAKALG------RKFVRISLGGVRD 388 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhc---------cCCCcEEEEECCCCCCchhHHHHHHHHhC------CCEEEEecCcccc
Confidence 44578889999999886633211 11123489999999999999999999998 677777765433
Q ss_pred --------CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH-----HHHhhccc
Q 001808 634 --------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD-----IMDEYGEK 700 (1010)
Q Consensus 634 --------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~-----~ld~~~~~ 700 (1010)
-.+.|.+..++-+-+..+....| +++|||+|.+.. +-.++ ....+++.|.- +.|.|-.-
T Consensus 389 EAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~s---s~rGD----PaSALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 389 EAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGS---SFRGD----PASALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred HHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccC---CCCCC----hHHHHHhhcCHhhcCchhhccccC
Confidence 24667777777777777776666 888999999963 22222 12244444422 23333221
Q ss_pred cCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhh-----hcc-----cccChHHHHhHh
Q 001808 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-----RRS-----LECSDEILLDVA 770 (1010)
Q Consensus 701 ~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~-----~~~-----~~~~~~~l~~la 770 (1010)
..+..+|+||+|+|+.+.+|.+|+. |+. +|++..++.++..+|.+.++- .++ +.++++.+..+.
T Consensus 461 ---~yDLS~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI 534 (782)
T COG0466 461 ---PYDLSKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDII 534 (782)
T ss_pred ---ccchhheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHH
Confidence 2233479999999999999999999 887 899999999999999986642 333 447788877776
Q ss_pred hhc
Q 001808 771 SKC 773 (1010)
Q Consensus 771 ~~t 773 (1010)
+..
T Consensus 535 ~~Y 537 (782)
T COG0466 535 RYY 537 (782)
T ss_pred HHH
Confidence 653
No 100
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4e-12 Score=150.24 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=138.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc-----ce------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK-----DL------ 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~-----~~------ 620 (1010)
+|++++|.+..++.+.+.+..- ..+..+||+||+|+||||+++.+|+.+.... ..
T Consensus 14 tFddVIGQe~vv~~L~~al~~g--------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQ--------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhC--------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 4668888888877776655321 1234589999999999999999999997421 00
Q ss_pred ------------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHH
Q 001808 621 ------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1010)
Q Consensus 621 ------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1010)
...+++++... ....+++++.+..+..........|+||||+|+|-. .-.+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas--~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------------~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS--NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------------HAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH---------------HHHH
Confidence 01234444432 234566666555544333334456999999999841 2334
Q ss_pred HHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHh
Q 001808 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1010)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~ 768 (1010)
.|+..+++... .+.||.+|+.++.+.+.+++ |.. .+.|..++.++..+.|+.++...++.++++.+..
T Consensus 143 ALLKTLEEPP~---------~v~FILaTtep~kLlpTIrS--RCq-~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~ 210 (700)
T PRK12323 143 AMLKTLEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRL 210 (700)
T ss_pred HHHHhhccCCC---------CceEEEEeCChHhhhhHHHH--HHH-hcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45555555332 47888889999999999999 765 8899999999999999998887788888888999
Q ss_pred HhhhcCCCChhhHHHHHHHHH
Q 001808 769 VASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 769 la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
|+..++| +.++...+++.++
T Consensus 211 IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 211 LAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9998888 6777777777655
No 101
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.41 E-value=7.6e-12 Score=149.52 Aligned_cols=223 Identities=16% Similarity=0.189 Sum_probs=140.3
Q ss_pred cccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccC---cc-eeeeEEEEec
Q 001808 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH---KD-LVAHIVFVCC 629 (1010)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~---~~-~~~~~~~i~~ 629 (1010)
..|.+.+..+++|...|...+.. ..++..++|+|+||||||++++.++++|... .. ....+++++|
T Consensus 755 D~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 57888999999998888665531 1222335699999999999999999888421 11 1256789999
Q ss_pred ccccCCch-----------------hhHHHHHHHHHHHHH--hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHH
Q 001808 630 SRLSLEKG-----------------PIIRQALSNFISEAL--DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1010)
Q Consensus 630 s~l~~~~~-----------------~~~~~~l~~~f~~a~--~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1010)
..+..... ......+..+|.... .....||+|||+|.|... .+.++..|
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK------------~QDVLYnL 892 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK------------TQKVLFTL 892 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc------------HHHHHHHH
Confidence 76443211 112234555555442 123569999999999621 01333333
Q ss_pred HHHHHhhccccCCccCCCcEEEEEecCC---ccccChhhhcCCcccc-cccCCCCcHHHHHHHHHHHhhhcccccChHHH
Q 001808 691 VDIMDEYGEKRKSSCGIGPIAFVASAQS---LEKIPQSLTSSGRFDF-HVQLPAPAASERKAILEHEIQRRSLECSDEIL 766 (1010)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~v~vIattn~---~~~L~~~L~r~gRf~~-~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l 766 (1010)
.++.. ... ..+.+|+++|. ++.+++.+.+ ||.. .+.|++++.+++.+||+..+......++++++
T Consensus 893 FR~~~---~s~------SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAI 961 (1164)
T PTZ00112 893 FDWPT---KIN------SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAI 961 (1164)
T ss_pred HHHhh---ccC------CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 33322 111 14889999986 3456677777 5543 47889999999999999988754445788888
Q ss_pred HhHhhhcCCC--ChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 767 LDVASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 767 ~~la~~t~g~--s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
+.+|+..... .+|..-.+|++|+.. + ....++.+++.+|+...
T Consensus 962 ELIArkVAq~SGDARKALDILRrAgEi---k-----------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 962 QLCARKVANVSGDIRKALQICRKAFEN---K-----------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHhh---c-----------CCCccCHHHHHHHHHHH
Confidence 8888744322 333333444444421 0 11257778888777654
No 102
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.40 E-value=5.1e-12 Score=134.78 Aligned_cols=181 Identities=24% Similarity=0.319 Sum_probs=130.5
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+.++.|.+.+..-+.+.+..-. ..++|||||||||||+.|+++|+++......-..+...+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~---------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRI---------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNAS 97 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcC---------------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccc
Confidence 345667777777766666554311 14699999999999999999999997533222345556667
Q ss_pred cccCCchhhHHHHHHHHHHHHH-----hc---CC-eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcccc
Q 001808 631 RLSLEKGPIIRQALSNFISEAL-----DH---AP-SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKR 701 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~-----~~---~P-sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~ 701 (1010)
+..|.... +.+++..-+... .. .| .|++|||+|.+.. .-...|.+.|+.+..
T Consensus 98 derGisvv--r~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts---------------daq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 98 DERGISVV--REKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS---------------DAQAALRRTMEDFSR-- 158 (346)
T ss_pred ccccccch--hhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhH---------------HHHHHHHHHHhcccc--
Confidence 76665532 222222111111 11 12 5999999999851 334557777777553
Q ss_pred CCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCC
Q 001808 702 KSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1010)
Q Consensus 702 ~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g 775 (1010)
.+.+|..||+.+.++..+.+ |.. .+.|++...+.....|+.+..+.++.++++.+..++..++|
T Consensus 159 -------~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 159 -------TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred -------ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 48899999999999999998 776 78889999988899999999999999999999999999888
No 103
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.8e-12 Score=148.67 Aligned_cols=194 Identities=18% Similarity=0.248 Sum_probs=135.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
++++++|.+...+.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 13 tFddVIGQe~vv~~L~~aI~~--------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALER--------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 467788888777766665531 1223568999999999999999999998642110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++.+.- ...+.++..+..+-.........|+||||+|+|-. ...+.|+..
T Consensus 79 ~~I~~g~hpDviEIDAAs~--~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~---------------~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR--TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST---------------HSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc--CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH---------------HHHHHHHHH
Confidence 012344444321 23444554444332222234457999999999831 233445555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
++.... .+.+|.+++.+..+++.+++ |+. .++|.+++.++..+.++..+.+.++.++++.+..++..+
T Consensus 142 LEEPP~---------~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 142 LEEPPE---------HVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HhcCCC---------CcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 655332 36777788888888888887 775 889999999999999999999889999999999999998
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| +.+++.++++.++
T Consensus 210 ~G-dLRdALnLLDQaI 224 (702)
T PRK14960 210 QG-SLRDALSLTDQAI 224 (702)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 7788888877765
No 104
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.39 E-value=1.4e-11 Score=142.16 Aligned_cols=226 Identities=19% Similarity=0.223 Sum_probs=141.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc---ceeeeEEEEeccc
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK---DLVAHIVFVCCSR 631 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~---~~~~~~~~i~~s~ 631 (1010)
.+.|.+..++++...+..... ...+++++|+||||||||++++++++.+.... .....+++++|..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~-----------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR-----------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 677899999999888866543 12245699999999999999999998874211 1114678899876
Q ss_pred ccCCc--hh------------------hHHHHHHHHHHHHH-hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHH
Q 001808 632 LSLEK--GP------------------IIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFL 690 (1010)
Q Consensus 632 l~~~~--~~------------------~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L 690 (1010)
..... .. ...+.+..++.... ...+.||+|||+|.+.+ .. ..++..|
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~---~~---------~~~L~~l 152 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG---DD---------DDLLYQL 152 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc---CC---------cHHHHhH
Confidence 54311 00 11122233333332 23467899999999962 10 0233333
Q ss_pred HHHHHhhccccCCccCCCcEEEEEecCCcc---ccChhhhcCCccc-ccccCCCCcHHHHHHHHHHHhhh--cccccChH
Q 001808 691 VDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDE 764 (1010)
Q Consensus 691 ~~~ld~~~~~~~~~~~~~~v~vIattn~~~---~L~~~L~r~gRf~-~~i~l~~P~~~eR~~IL~~~l~~--~~~~~~~~ 764 (1010)
.++.+.... ...++.+|+++|.++ .+++.+.+ ||. ..+.+++++.+++.+|++..+.. ....++++
T Consensus 153 ~~~~~~~~~------~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~ 224 (365)
T TIGR02928 153 SRARSNGDL------DNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG 224 (365)
T ss_pred hccccccCC------CCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh
Confidence 332111110 012588888888765 46777776 664 56899999999999999988763 22336666
Q ss_pred HHHhHhhh---cCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 765 ILLDVASK---CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 765 ~l~~la~~---t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
.+..++.. +.| .++....++++|...+..+ ....++.+++.+|+...
T Consensus 225 ~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~-----------~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 225 VIPLCAALAAQEHG-DARKAIDLLRVAGEIAERE-----------GAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 66655443 345 4555556777776655433 22458888888887664
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=6e-12 Score=148.88 Aligned_cols=274 Identities=16% Similarity=0.243 Sum_probs=165.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++||||+|+|||+|++++++++..... ...+.++++.++.......+.......|.... ..+.+|+|||++.+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGK 226 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCC
Confidence 46999999999999999999999854321 15678889887754433333221112232222 35789999999998521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc---cChhhhcCCccc--ccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf~--~~i~l~~P~~~e 745 (1010)
......+...+....+. . ..++|++...+.. +++.+.+ ||. ..+.+++|+.++
T Consensus 227 ---------~~~~~~l~~~~n~l~~~----~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~ 284 (450)
T PRK00149 227 ---------ERTQEEFFHTFNALHEA----G-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLET 284 (450)
T ss_pred ---------HHHHHHHHHHHHHHHHC----C-------CcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHH
Confidence 11122444433333221 1 1355555555544 6688888 775 578999999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcccc
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
|.+|++..+...++.++++.++.+|....| +.++|..++.+....+... ...++.+.+.+++.+...
T Consensus 285 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 285 RIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------GKPITLELAKEALKDLLA 351 (450)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHhhc
Confidence 999999999888889999999999999887 6777877777665433221 133677777777665321
Q ss_pred ccccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc
Q 001808 826 VAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1010)
Q Consensus 826 ~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~ 905 (1010)
.. ..-...+.+.+.+.+...... .+ |.|+.-.-+-..||.+|-.+-..
T Consensus 352 ~~----------------~~~~~~~~i~~~v~~~~~i~~--~~--------------l~~~~R~~~~~~aR~iamyl~~~ 399 (450)
T PRK00149 352 AQ----------------KKKITIENIQKVVAEYYNIKV--SD--------------LKSKSRTRNIARPRQIAMYLAKE 399 (450)
T ss_pred cC----------------CCCCCHHHHHHHHHHHcCCCH--HH--------------HhCCCCCcccChHHHHHHHHHHH
Confidence 00 011234556666655543221 11 12222222334567777666555
Q ss_pred EEEEecchhhhhhhcccHHHHHHHHHHH
Q 001808 906 FISVKGPELLNKYIGASEQAVRDIFSKA 933 (1010)
Q Consensus 906 ~i~v~~~el~~~~ig~se~~l~~lf~~A 933 (1010)
+...+.+++-..+-|.....+....++.
T Consensus 400 ~~~~s~~~Ig~~fg~rdhstV~~a~~~i 427 (450)
T PRK00149 400 LTDLSLPEIGRAFGGRDHTTVLHAVRKI 427 (450)
T ss_pred hcCCCHHHHHHHcCCCCHhHHHHHHHHH
Confidence 5455555543333345555555555444
No 106
>PRK06893 DNA replication initiation factor; Validated
Probab=99.39 E-value=5.5e-12 Score=135.68 Aligned_cols=166 Identities=20% Similarity=0.251 Sum_probs=110.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
..++||||||||||+|++++|+++.... ..+.++++...... ..+.+... ....+|+|||++.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~~~--------~~~~~~~~--~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQYF--------SPAVLENL--EQQDLVCLDDLQAVIGN 106 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhhhh--------hHHHHhhc--ccCCEEEEeChhhhcCC
Confidence 3489999999999999999999875332 23455555432111 11222222 34579999999988521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccC---hhhhcCCcccccccCCCCcHHHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRFDFHVQLPAPAASERK 747 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~---~~L~r~gRf~~~i~l~~P~~~eR~ 747 (1010)
......+. ..++.....+. .++++++...+..++ +.+.++.++...+.+++|+.++|.
T Consensus 107 ---------~~~~~~l~----~l~n~~~~~~~------~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 107 ---------EEWELAIF----DLFNRIKEQGK------TLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred ---------hHHHHHHH----HHHHHHHHcCC------cEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 11112333 33333322111 245566666666654 788885555678899999999999
Q ss_pred HHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 748 ~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+|++..+..+++.++++++..++...+| +.+.+..++++..
T Consensus 168 ~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 208 (229)
T PRK06893 168 IVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 9999999888999999999999999887 5666666666543
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=6.3e-12 Score=147.43 Aligned_cols=277 Identities=13% Similarity=0.182 Sum_probs=167.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++||||+|+|||+|++++++++..... ...+.+++++++.......+...-..-|....+..+.+|+|||++.+.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 45999999999999999999998753211 15678888887654333322211112233334446889999999988531
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc---cChhhhcCCcc--cccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRF--DFHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf--~~~i~l~~P~~~e 745 (1010)
......+...+....+. . ..+++++...+.. +.+.+.+ || ...+.+++|+.+.
T Consensus 210 ---------~~~q~elf~~~n~l~~~----~-------k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 210 ---------TGVQTELFHTFNELHDS----G-------KQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEET 267 (440)
T ss_pred ---------HHHHHHHHHHHHHHHHc----C-------CeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHH
Confidence 11122444444333321 1 2455555566554 4567777 66 3567999999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcccc
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
|.+|++..+...++.++++++..|+....| +.++|..++.+....+... ...++.+...+++.++..
T Consensus 268 r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~------------~~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 268 RKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT------------GEEVDLKEAILLLKDFIK 334 (440)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHHHhc
Confidence 999999999888899999999999999887 6778877777654333221 134666666666665321
Q ss_pred ccccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc
Q 001808 826 VAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR 905 (1010)
Q Consensus 826 ~~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~ 905 (1010)
.. .-......+.+.+.+.+..... .. =|.|++-..+-..||.+|-.+-..
T Consensus 335 ~~--------------~~~~~i~~~~I~~~V~~~~~i~--~~--------------~l~s~~R~~~i~~aR~iamyl~r~ 384 (440)
T PRK14088 335 PN--------------RVKAMDPIDELIEIVAKVTGVS--RE--------------EILSNSRNVKALLARRIGMYVAKN 384 (440)
T ss_pred cc--------------cccCCCCHHHHHHHHHHHcCCc--HH--------------HHhCCCCCccccHHHHHHHHHHHH
Confidence 00 0001123456666665553211 11 123455556667788777666555
Q ss_pred EEEEecchhhhhhhcccHHHHHHHHHHHh
Q 001808 906 FISVKGPELLNKYIGASEQAVRDIFSKAT 934 (1010)
Q Consensus 906 ~i~v~~~el~~~~ig~se~~l~~lf~~A~ 934 (1010)
....+.+++-. ..|.....+-...++..
T Consensus 385 ~~~~s~~~Ig~-~fgr~hstV~~a~~~i~ 412 (440)
T PRK14088 385 YLGSSLRTIAE-KFNRSHPVVVDSVKKVK 412 (440)
T ss_pred HhCCCHHHHHH-HhCCCHHHHHHHHHHHH
Confidence 44445555433 33555555555555543
No 108
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=5.5e-13 Score=145.48 Aligned_cols=156 Identities=18% Similarity=0.208 Sum_probs=110.9
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhccc
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGAS 922 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~s 922 (1010)
++++.-...+.+.+.++.... .... ....|-.++|||||||||||++|+-||...|+++-.+.+.|..- .-.+.
T Consensus 354 l~~ViL~psLe~Rie~lA~aT-aNTK----~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~qa 427 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIAT-ANTK----KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQA 427 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHh-cccc----cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchHH
Confidence 555555556666665544311 1110 11123458999999999999999999999999999998888643 12233
Q ss_pred HHHHHHHHHHHhcCC-CeEEEEeCCCccCCCCCCCCCc-chHHHHHHHHHHhcCccccCcEEEEEeCCC-------CcCC
Q 001808 923 EQAVRDIFSKATAAA-PCLLFFDEFDSIAPKRGHDNTG-VTDRVVNQFLTELDGVEVLTGVFVFAATRL-------EFFH 993 (1010)
Q Consensus 923 e~~l~~lf~~A~~~~-p~VLfiDEid~l~~~R~~~~~~-~~~rv~~~lL~~ldg~e~~~~v~viatTn~-------r~gR 993 (1010)
-..+..+|+.|+... .-+|||||+|+++..|.....+ ..+..+|.||-.-. +....++++.+||+ -..|
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~DR 505 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVNDR 505 (630)
T ss_pred HHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHhh
Confidence 467999999997654 4589999999999999765433 34557788776653 44555666666777 5569
Q ss_pred cceEEEecCCCcc
Q 001808 994 YNVLLFCSFIIFL 1006 (1010)
Q Consensus 994 ~d~~l~~~~p~~~ 1006 (1010)
+|..|.||+|..|
T Consensus 506 ide~veFpLPGeE 518 (630)
T KOG0742|consen 506 IDEVVEFPLPGEE 518 (630)
T ss_pred hhheeecCCCChH
Confidence 9999999999865
No 109
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.6e-11 Score=149.48 Aligned_cols=194 Identities=21% Similarity=0.246 Sum_probs=134.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCccee----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~---------- 621 (1010)
.|.+++|.+..++.+.+.+.. ...+..+||+||+|||||++||++|+.+.......
T Consensus 14 tFddIIGQe~Iv~~LknaI~~--------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQ--------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 466778888777766654422 11134479999999999999999999986431100
Q ss_pred --------eeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 622 --------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 622 --------~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
..++.++... ......++..+..+..........|+||||+|+|- ....+.|+..
T Consensus 80 ~~i~~g~~~DviEidAas--~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT---------------~eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS--RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS---------------RSSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC---------------HHHHHHHHHH
Confidence 0122233221 12334455544443322223345699999999983 1344556666
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.+|++|+.+..+.+.+++ |.. .++|.+++.++..+.|++.+...++.++++.+..|+..+
T Consensus 143 LEEPP~---------~vrFILaTTe~~kLl~TIlS--RCq-~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S 210 (944)
T PRK14949 143 LEEPPE---------HVKFLLATTDPQKLPVTVLS--RCL-QFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAA 210 (944)
T ss_pred HhccCC---------CeEEEEECCCchhchHHHHH--hhe-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 47777788888889888888 664 789999999999999999888778888999999999998
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| ++|++..+++.++
T Consensus 211 ~G-d~R~ALnLLdQal 225 (944)
T PRK14949 211 NG-SMRDALSLTDQAI 225 (944)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 88 6777777777665
No 110
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.36 E-value=7.9e-12 Score=149.84 Aligned_cols=229 Identities=16% Similarity=0.207 Sum_probs=144.3
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc----ceeeeEEE
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK----DLVAHIVF 626 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~----~~~~~~~~ 626 (1010)
..++++.|.+..++.++..+ . .+.+.++||+||||||||++|+++++...... .....++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al---~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~ 126 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAAL---C------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE 126 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHH---h------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE
Confidence 34667888888877776432 1 22346899999999999999999988653221 11256888
Q ss_pred EecccccCCchhhHHHHHH----------HHHH----------HHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHH
Q 001808 627 VCCSRLSLEKGPIIRQALS----------NFIS----------EALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIAL 686 (1010)
Q Consensus 627 i~~s~l~~~~~~~~~~~l~----------~~f~----------~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l 686 (1010)
++|........+.....+. ..|. ........+|||||++.|- ....+.+
T Consensus 127 id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~-----------~~~q~~L 195 (531)
T TIGR02902 127 IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH-----------PVQMNKL 195 (531)
T ss_pred EccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC-----------HHHHHHH
Confidence 9986421100000000000 0000 0112234799999999983 2233344
Q ss_pred HHHHHHHHHhh-----ccccCC----------ccCCCcEEEE-EecCCccccChhhhcCCcccccccCCCCcHHHHHHHH
Q 001808 687 TKFLVDIMDEY-----GEKRKS----------SCGIGPIAFV-ASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAIL 750 (1010)
Q Consensus 687 ~~~L~~~ld~~-----~~~~~~----------~~~~~~v~vI-attn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL 750 (1010)
+..|.+..-.. ...+.. .....++.+| +|++.++.+++++++ |+. .+.+++++.+++.+|+
T Consensus 196 L~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il 272 (531)
T TIGR02902 196 LKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIA 272 (531)
T ss_pred HHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHH
Confidence 44433211000 000000 0001134444 556778999999999 875 7889999999999999
Q ss_pred HHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhh
Q 001808 751 EHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMH 821 (1010)
Q Consensus 751 ~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~ 821 (1010)
+..+++.++.++++.++.++..+. +++++.++++.|+..+..+ ....++.+|+..++.
T Consensus 273 ~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 273 KNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhC
Confidence 999998888899999988877654 7899999999887655432 224588888888876
No 111
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.4e-11 Score=136.05 Aligned_cols=143 Identities=22% Similarity=0.351 Sum_probs=101.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHh----cCCeEEEEccchh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDS 666 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~ 666 (1010)
.+++|||||||||||||+.+|+..+ ..|..++.-.- ... .++++++++.. ....||||||+|.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~------~~f~~~sAv~~---gvk----dlr~i~e~a~~~~~~gr~tiLflDEIHR 115 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTN------AAFEALSAVTS---GVK----DLREIIEEARKNRLLGRRTILFLDEIHR 115 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhC------CceEEeccccc---cHH----HHHHHHHHHHHHHhcCCceEEEEehhhh
Confidence 4699999999999999999999987 56666665332 222 35555555532 3457999999999
Q ss_pred hhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecC--CccccChhhhcCCcccccccCCCCcHH
Q 001808 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAAS 744 (1010)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn--~~~~L~~~L~r~gRf~~~i~l~~P~~~ 744 (1010)
+- ..+ ...|+..++. |.+++|++|+ +.-.++++|++ |-. ++.+.+.+.+
T Consensus 116 fn----K~Q-----------QD~lLp~vE~-----------G~iilIGATTENPsF~ln~ALlS--R~~-vf~lk~L~~~ 166 (436)
T COG2256 116 FN----KAQ-----------QDALLPHVEN-----------GTIILIGATTENPSFELNPALLS--RAR-VFELKPLSSE 166 (436)
T ss_pred cC----hhh-----------hhhhhhhhcC-----------CeEEEEeccCCCCCeeecHHHhh--hhh-eeeeecCCHH
Confidence 83 111 1234444443 2478887764 34568999999 654 7889999999
Q ss_pred HHHHHHHHHhh--hcccc-----cChHHHHhHhhhcCC
Q 001808 745 ERKAILEHEIQ--RRSLE-----CSDEILLDVASKCDG 775 (1010)
Q Consensus 745 eR~~IL~~~l~--~~~~~-----~~~~~l~~la~~t~g 775 (1010)
+..++++..+. .+++. ++++.+..++..+.|
T Consensus 167 di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G 204 (436)
T COG2256 167 DIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG 204 (436)
T ss_pred HHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc
Confidence 99999987333 34444 678899999999888
No 112
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.8e-11 Score=144.09 Aligned_cols=193 Identities=18% Similarity=0.255 Sum_probs=123.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
.++++.|.+...+.+...+ .. ...+.++||+|||||||||+|+++|+.+.....
T Consensus 12 ~~~divGq~~i~~~L~~~i----~~----------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINAL----KK----------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CHHHccCcHHHHHHHHHHH----Hc----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 3556777766544443322 11 112355899999999999999999999864211
Q ss_pred ------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
....+..++.+. ....+.+++....+-.........|+||||+|.+.. .....|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~--~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~---------------~a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS--NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK---------------EAFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCcc--cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH---------------HHHHHHHHH
Confidence 001344444432 122333433221111111112456999999999841 223344555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
++.... .+.+|++++.+..+++++.+ |+. .+.+.+++.++...+++..+...++.++++++..++..+
T Consensus 141 LE~p~~---------~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 141 LEEPPS---------HVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHhCCC---------cEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 554322 36677777777789999998 775 789999999999999999988888899999999999988
Q ss_pred CCCChhhHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRT 788 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A 788 (1010)
.| +.+++.+.++.+
T Consensus 209 ~G-dlR~aln~Le~l 222 (472)
T PRK14962 209 SG-GLRDALTMLEQV 222 (472)
T ss_pred CC-CHHHHHHHHHHH
Confidence 76 455555555543
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=2.7e-11 Score=141.27 Aligned_cols=226 Identities=21% Similarity=0.243 Sum_probs=143.6
Q ss_pred cccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc
Q 001808 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1010)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1010)
..+.|.+..++++...+..... ...+.+++|+||||+|||++++.+++.+.... ....+++++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-----------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~ 97 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-----------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDR 97 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-----------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCC
Confidence 3567788888888887755442 12235699999999999999999999885332 12567888887543
Q ss_pred CCc------------------hhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001808 634 LEK------------------GPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1010)
Q Consensus 634 ~~~------------------~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1010)
... .......+..+.+.... ..+.||+|||+|.+.. . .+ ...+..|.+.+
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~-~---~~-------~~~l~~l~~~~ 166 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE-K---EG-------NDVLYSLLRAH 166 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc-c---CC-------chHHHHHHHhh
Confidence 210 00122223333332222 3467999999999861 1 00 13344444444
Q ss_pred HhhccccCCccCCCcEEEEEecCCcc---ccChhhhcCCccc-ccccCCCCcHHHHHHHHHHHhhhc--ccccChHHHHh
Q 001808 695 DEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQRR--SLECSDEILLD 768 (1010)
Q Consensus 695 d~~~~~~~~~~~~~~v~vIattn~~~---~L~~~L~r~gRf~-~~i~l~~P~~~eR~~IL~~~l~~~--~~~~~~~~l~~ 768 (1010)
+.... .++.+|++++..+ .+++.+.+ ||. ..+.+++++.++..+|++..+... ...++++.++.
T Consensus 167 ~~~~~--------~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~ 236 (394)
T PRK00411 167 EEYPG--------ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDL 236 (394)
T ss_pred hccCC--------CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHH
Confidence 43321 1477888877643 46676666 553 468999999999999999887642 22467888888
Q ss_pred HhhhcCCC--ChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 769 VASKCDGY--DAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 769 la~~t~g~--s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
++..+.+. ..+.+..++++|...+..+ ....++.+++.+|+...
T Consensus 237 i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 237 IADLTAREHGDARVAIDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 88877432 3344456666666555433 23568889999888775
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.7e-11 Score=145.69 Aligned_cols=195 Identities=18% Similarity=0.222 Sum_probs=135.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
+|++++|.+..++.+.+.+..- ..+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~--------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQ--------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhC--------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 4667888888877777655321 123458999999999999999999998643111
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...+++++.+. ....+.++..+..+-.........|+||||+|++-. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~---------------~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS--RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG---------------HSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc--cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH---------------HHHHHHHHH
Confidence 11245555432 233445554443332222223446999999999841 223445556
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.+|.+|+.+..+++.+.+ |.. .+++.+++.++....++..+.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIlattd~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s 210 (509)
T PRK14958 143 LEEPPS---------HVKFILATTDHHKLPVTVLS--RCL-QFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA 210 (509)
T ss_pred HhccCC---------CeEEEEEECChHhchHHHHH--Hhh-hhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 36777777888888888888 664 788999999999999999998888899999999999988
Q ss_pred CCCChhhHHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~~ 790 (1010)
.| +.+++.+++++++.
T Consensus 211 ~G-slR~al~lLdq~ia 226 (509)
T PRK14958 211 NG-SVRDALSLLDQSIA 226 (509)
T ss_pred CC-cHHHHHHHHHHHHh
Confidence 76 78888888877653
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=1.9e-11 Score=145.17 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=162.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCC
Q 001808 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSS 671 (1010)
Q Consensus 592 ~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~ 671 (1010)
.++|||++|+|||+|++++++++.... ....+.|+++.++.......+.....+.|.... ...++|+|||++.+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk- 392 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK- 392 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC-
Confidence 499999999999999999999875311 115678999988765444433332222333322 35689999999988521
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcc---ccChhhhcCCcc--cccccCCCCcHHHH
Q 001808 672 SDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRF--DFHVQLPAPAASER 746 (1010)
Q Consensus 672 ~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~---~L~~~L~r~gRf--~~~i~l~~P~~~eR 746 (1010)
......+++.|....+ .+ .-++|++...+. .+++.|.+ || ...+.+.+|+.+.|
T Consensus 393 --------e~tqeeLF~l~N~l~e----~g-------k~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 393 --------ESTQEEFFHTFNTLHN----AN-------KQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETR 451 (617)
T ss_pred --------HHHHHHHHHHHHHHHh----cC-------CCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHH
Confidence 1112344444433322 11 123443333333 46788998 66 56779999999999
Q ss_pred HHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhccccc
Q 001808 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1010)
Q Consensus 747 ~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1010)
.+||+..+..+++.+++++++.|+....+ +.++|..++.+....+... ...++.+.....++++.+.
T Consensus 452 ~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~------------~~~itl~la~~vL~~~~~~ 518 (617)
T PRK14086 452 IAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN------------RQPVDLGLTEIVLRDLIPE 518 (617)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHhhcc
Confidence 99999999999999999999999998876 6777777777654333221 1335655555565543221
Q ss_pred cccccccccCCCCCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcE
Q 001808 827 AMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF 906 (1010)
Q Consensus 827 ~lr~v~~~~~~~~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~ 906 (1010)
. . ......+.+.+.+.+....... + |.|..-.-+-..|+.+|-.+...+
T Consensus 519 ~-------~--------~~~it~d~I~~~Va~~f~v~~~--d--------------l~s~~R~~~i~~aRqiAMYL~r~l 567 (617)
T PRK14086 519 D-------S--------APEITAAAIMAATADYFGLTVE--D--------------LCGTSRSRVLVTARQIAMYLCREL 567 (617)
T ss_pred c-------c--------CCcCCHHHHHHHHHHHhCCCHH--H--------------HhCCCCCcccchHHHHHHHHHHHH
Confidence 0 0 0112345555555554432211 1 122222223456777776665555
Q ss_pred EEEecchhhhhhhcccHHHHHHHHHHHh
Q 001808 907 ISVKGPELLNKYIGASEQAVRDIFSKAT 934 (1010)
Q Consensus 907 i~v~~~el~~~~ig~se~~l~~lf~~A~ 934 (1010)
...+.+++ ++..|.....+-..+++++
T Consensus 568 t~~Sl~~I-G~~FgRdHSTV~~A~~kI~ 594 (617)
T PRK14086 568 TDLSLPKI-GQQFGRDHTTVMHADRKIR 594 (617)
T ss_pred cCCCHHHH-HHHhCCChhHHHHHHHHHH
Confidence 55555553 2333444444444444443
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=2e-11 Score=142.89 Aligned_cols=195 Identities=17% Similarity=0.233 Sum_probs=136.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
+|.+++|.+...+.+.+.+.. ...+.++||+||+|+||||+|+.+|+.+....+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~--------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTL--------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 466788887766655543321 122467999999999999999999998743211
Q ss_pred ------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
....+++++.++ ....+.++..+...-.........|++|||+|+|-. .-.+.|+..
T Consensus 77 ~~i~~~~~~Dv~eidaas--~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~---------------~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAAS--NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN---------------SAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEeccc--CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH---------------HHHHHHHHH
Confidence 113356666653 223455555444332222233456999999999831 223445555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.+|.+++..+.+.+.+.+ |.. .+++.+++.++..+.++..+.+.+..++++.+..++..+
T Consensus 140 LEePp~---------~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 140 LEEPAP---------HVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred HhCCCC---------CeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 555332 36777777888889888888 765 689999999999999999999889999999999999998
Q ss_pred CCCChhhHHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~~ 790 (1010)
+| +.+++..++++++.
T Consensus 208 ~G-slR~alslLdqli~ 223 (491)
T PRK14964 208 SG-SMRNALFLLEQAAI 223 (491)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 77 77888888877653
No 117
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.6e-11 Score=145.21 Aligned_cols=195 Identities=18% Similarity=0.219 Sum_probs=134.5
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.|.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 tFddIIGQe~vv~~L~~ai~~--------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDE--------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 466788888887777665532 1223569999999999999999999998643110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++... ....+.++..+...-.........|+||||+|.+- . ...+.|+..
T Consensus 80 r~i~~g~~~DvlEidaAs--~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~----~A~NALLKt 142 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS--NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------K----SAFNAMLKT 142 (709)
T ss_pred HHHhccCccceEEEeccc--cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------H----HHHHHHHHH
Confidence 01123333322 22233444443322111122345699999999873 1 223445555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
++.... .+.+|.+++.+..+.+.+++ |+. .+.|++++.++....|+..+.+.++.++++.+..|+..+
T Consensus 143 LEEPp~---------~v~fILaTtd~~kL~~TIrS--RC~-~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 143 LEEPPE---------HVKFILATTDPHKVPVTVLS--RCL-QFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred HHhCCC---------CcEEEEEeCCccccchHHHH--HHh-hhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 655332 36777788888888888887 774 788999999999999999999989999999999999998
Q ss_pred CCCChhhHHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~~ 790 (1010)
.| +.+++.+++++++.
T Consensus 211 ~G-slRdAlnLLDqaia 226 (709)
T PRK08691 211 AG-SMRDALSLLDQAIA 226 (709)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 78888888887664
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.34 E-value=1.2e-11 Score=144.39 Aligned_cols=195 Identities=18% Similarity=0.286 Sum_probs=127.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++||||+|+|||+|++++++++.... ....++++++.++...........-...|.... ..+.+|+|||++.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY-RSVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH-HhCCEEEEehhhhhcCC
Confidence 4699999999999999999999985331 115677888877654322222111111122212 24679999999998521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc---cChhhhcCCccc--ccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf~--~~i~l~~P~~~e 745 (1010)
. .....+...+....+ .. ..++|++...+.. +++.+.+ ||. ..+.+++|+.++
T Consensus 215 ~---------~~~~~l~~~~n~~~~----~~-------~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 215 E---------RTQEEFFHTFNALHE----NG-------KQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLET 272 (405)
T ss_pred H---------HHHHHHHHHHHHHHH----CC-------CCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHH
Confidence 0 112234443333322 11 1345555555444 5577888 775 468999999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
|.+|++..+...++.++++.++.+|....+ +.++|..++.+....+... ...++.+.+.+++..
T Consensus 273 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~------------~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 273 RLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT------------GKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHH
Confidence 999999999988999999999999988876 6788888887765444321 133666666666554
No 119
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.2e-11 Score=142.38 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=133.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.+.+++|.+..+..+...+.. ...+.++||+||+||||||+|+.+|+.+......
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~--------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILN--------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 356777887777665553321 1224679999999999999999999998642110
Q ss_pred -----------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHH
Q 001808 621 -----------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1010)
Q Consensus 621 -----------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1010)
...+++++... ....+.++..+.............|++|||+|.+-. .-.+.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas--~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~---------------~a~na 147 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAAS--KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK---------------GAFNA 147 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccC--CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------------HHHHH
Confidence 01233444322 223444444443332222223456999999998831 22333
Q ss_pred HHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhH
Q 001808 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1010)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~l 769 (1010)
|+..++.... .+.+|++++..+.+++.+.+ |.. .+++.+++.++...+++..+.+.+..++++.+..+
T Consensus 148 LLk~LEepp~---------~~vfI~aTte~~kI~~tI~S--Rc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~I 215 (507)
T PRK06645 148 LLKTLEEPPP---------HIIFIFATTEVQKIPATIIS--RCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRII 215 (507)
T ss_pred HHHHHhhcCC---------CEEEEEEeCChHHhhHHHHh--cce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4444544321 36777777888889888888 664 78899999999999999999988999999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHH
Q 001808 770 ASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 770 a~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
+..++| +.+++.+++++++.
T Consensus 216 a~~s~G-slR~al~~Ldkai~ 235 (507)
T PRK06645 216 AYKSEG-SARDAVSILDQAAS 235 (507)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 998887 78888888888754
No 120
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3e-11 Score=145.46 Aligned_cols=194 Identities=20% Similarity=0.265 Sum_probs=135.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.|.+++|.+..++.+.+.+.. ...+..+||+||+|+||||+|+.+|+.+......
T Consensus 14 ~f~divGQe~vv~~L~~~l~~--------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDL--------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 466788888877766654432 1123447999999999999999999998642110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++... ....+.++..+..+..........|+||||+|+|-. .-.+.|+..
T Consensus 80 ~~i~~g~~~D~ieidaas--~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~---------------~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS--RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR---------------HSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH---------------HHHHHHHHH
Confidence 01233344332 123455555554433333334556999999999841 334455566
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.+|.+|+.++.+.+.+++ |. ..++|.+++.++....|+..+...++.+++..+..++..+
T Consensus 143 LEEPp~---------~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 143 LEEPPE---------HVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA 210 (647)
T ss_pred HHcCCC---------CeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 47788888888899999998 75 4899999999999999999888778888999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| +.++...+++.++
T Consensus 211 ~G-s~R~Al~lldqai 225 (647)
T PRK07994 211 DG-SMRDALSLTDQAI 225 (647)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 88 6677777776654
No 121
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.34 E-value=4.4e-11 Score=129.12 Aligned_cols=164 Identities=16% Similarity=0.221 Sum_probs=111.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++|+||+|||||+|++++++++.... ..+.+++.+...... .+.++... .-.+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~dlliiDdi~~~~~- 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRAWFV--------PEVLEGME--QLSLVCIDNIECIAG- 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHhhhh--------HHHHHHhh--hCCEEEEeChhhhcC-
Confidence 5799999999999999999999875332 345566655432211 11111111 125899999998842
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc---cChhhhcCCccc--ccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf~--~~i~l~~P~~~e 745 (1010)
.......+...+....+. +. ..+++++.+++.. +.+.|++ |+. ..+.+++|+.++
T Consensus 112 --------~~~~~~~lf~l~n~~~e~----g~------~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~ 171 (235)
T PRK08084 112 --------DELWEMAIFDLYNRILES----GR------TRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEE 171 (235)
T ss_pred --------CHHHHHHHHHHHHHHHHc----CC------CeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHH
Confidence 111223444555444331 10 1344555555555 5689999 774 688999999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
|.++++..+..+++.+++++++.++...+| +.+.+..++++..
T Consensus 172 ~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~ 214 (235)
T PRK08084 172 KLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 999999878878899999999999999888 6677777777654
No 122
>PLN03025 replication factor C subunit; Provisional
Probab=99.33 E-value=2.7e-11 Score=136.95 Aligned_cols=165 Identities=22% Similarity=0.272 Sum_probs=113.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHH---hcCCeEEEEccchhh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL---DHAPSIVIFDNLDSI 667 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~---~~~PsIL~IDEiD~L 667 (1010)
.++||+||||||||++|+++|+++.... ....+..++.++..+ .+.++..++...+... .....+++|||+|.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~eln~sd~~~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l 111 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPN-YKEAVLELNASDDRG--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM 111 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhccc-Cccceeeeccccccc--HHHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence 4699999999999999999999984221 113455666655432 2334444433222111 123579999999998
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHH
Q 001808 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1010)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~ 747 (1010)
.. .-.+.|...++.+.. ...+|.++|....+.+.+++ |.. .+++++|+.++..
T Consensus 112 t~---------------~aq~aL~~~lE~~~~---------~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~ 164 (319)
T PLN03025 112 TS---------------GAQQALRRTMEIYSN---------TTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEIL 164 (319)
T ss_pred CH---------------HHHHHHHHHHhcccC---------CceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHH
Confidence 41 122345555554432 24577788888888888998 654 7899999999999
Q ss_pred HHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHH
Q 001808 748 AILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1010)
Q Consensus 748 ~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~ 786 (1010)
..++..+.+.++.++++.+..++..+.| +.+.+.+.++
T Consensus 165 ~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 165 GRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9999999988999999999999998776 3444444443
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.33 E-value=2.9e-11 Score=129.67 Aligned_cols=165 Identities=21% Similarity=0.308 Sum_probs=111.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhc
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1010)
+.+++|+||+|||||++++++++++.... ..+++++|..+.... ..++... ..+.+|+|||+|.+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQAD--------PEVLEGL--EQADLVCLDDVEAIAG 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHhH--------HHHHhhc--ccCCEEEEeChhhhcC
Confidence 46799999999999999999999875332 467889998876322 1222222 2346999999998841
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccC---hhhhcCCcc--cccccCCCCcHH
Q 001808 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP---QSLTSSGRF--DFHVQLPAPAAS 744 (1010)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~---~~L~r~gRf--~~~i~l~~P~~~ 744 (1010)
.......+.. .++...... ..++++++..+..++ +.+.+ |+ ...+.+++|+.+
T Consensus 105 ---------~~~~~~~L~~----~l~~~~~~~-------~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~ 162 (226)
T TIGR03420 105 ---------QPEWQEALFH----LYNRVREAG-------GRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDE 162 (226)
T ss_pred ---------ChHHHHHHHH----HHHHHHHcC-------CeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHH
Confidence 0011223333 333322111 133444443443332 56676 55 467899999999
Q ss_pred HHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 745 eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
++..+++.++.+.++.++++.+..++..+.| +.+++..+++++..
T Consensus 163 e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~ 207 (226)
T TIGR03420 163 EKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDR 207 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 9999999888777888999999999996554 88999999887654
No 124
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=4e-11 Score=137.81 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=126.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.++++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~--------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSL--------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 356777888777766654422 1123458999999999999999999998532110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1010)
...+..++... ......+ +++++.+. .....|++|||+|.+-. ...+.
T Consensus 80 ~~~~~~~~~d~~~~~~~~--~~~v~~i----r~i~~~~~~~p~~~~~kviIIDEa~~l~~---------------~a~na 138 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS--RTKVEEM----REILDNIYYSPSKSRFKVYLIDEVHMLSR---------------HSFNA 138 (363)
T ss_pred HHHhcCCCCceEEecccc--cCCHHHH----HHHHHHHhcCcccCCceEEEEEChhhcCH---------------HHHHH
Confidence 01122232221 1122333 33333322 12345999999998831 22233
Q ss_pred HHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhH
Q 001808 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1010)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~l 769 (1010)
|+..++.... .+.+|.+++..+.+.+.+.+ |+. .+++++|+.++..++++..++..+..++++.+..+
T Consensus 139 LLk~lEe~~~---------~~~fIl~t~~~~~l~~tI~S--Rc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~i 206 (363)
T PRK14961 139 LLKTLEEPPQ---------HIKFILATTDVEKIPKTILS--RCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLI 206 (363)
T ss_pred HHHHHhcCCC---------CeEEEEEcCChHhhhHHHHh--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555554322 36677777778888888888 764 78999999999999999999888888999999999
Q ss_pred hhhcCCCChhhHHHHHHHHH
Q 001808 770 ASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 770 a~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+..+.| +++++.+++++++
T Consensus 207 a~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 207 AYHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 998877 6777777777664
No 125
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.9e-11 Score=140.68 Aligned_cols=211 Identities=20% Similarity=0.331 Sum_probs=135.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccc--
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL-- 632 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l-- 632 (1010)
+-.|++..++.|++.+....-. +-..+.-+.|+||||+|||+++|.+|+.|+ +.|+.++...+
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr---------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALn------RkFfRfSvGG~tD 476 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR---------GSVQGKILCFVGPPGVGKTSIAKSIARALN------RKFFRFSVGGMTD 476 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc---------ccCCCcEEEEeCCCCCCcccHHHHHHHHhC------CceEEEecccccc
Confidence 3456777888888877552110 112234489999999999999999999998 66666665443
Q ss_pred ----c---CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH-----HHHHhhccc
Q 001808 633 ----S---LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV-----DIMDEYGEK 700 (1010)
Q Consensus 633 ----~---~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~-----~~ld~~~~~ 700 (1010)
. -.|.|.+..++-+.+..+.-..| +++|||+|.+.+ ...++ ....+++.|. +++|.|-.-
T Consensus 477 vAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~---g~qGD----PasALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004|consen 477 VAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS---GHQGD----PASALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred HHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC---CCCCC----hHHHHHHhcChhhccchhhhcccc
Confidence 2 24667777777777776665555 889999999952 11111 1224444332 223333221
Q ss_pred cCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh-----cc-----cccChHHHHhHh
Q 001808 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR-----RS-----LECSDEILLDVA 770 (1010)
Q Consensus 701 ~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~-----~~-----~~~~~~~l~~la 770 (1010)
..+...|+||+|+|..+.+|++|+. |+. .|+++-+..++...|.+.++-. ++ +.++++.+..+.
T Consensus 549 ---p~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI 622 (906)
T KOG2004|consen 549 ---PVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALI 622 (906)
T ss_pred ---ccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHH
Confidence 2233469999999999999999999 887 8999999999999999877642 22 345666655544
Q ss_pred hh-cCCCChh----hHHHHHHHHHHHHHH
Q 001808 771 SK-CDGYDAY----DLEILVDRTVHAAVG 794 (1010)
Q Consensus 771 ~~-t~g~s~~----DL~~Lv~~A~~~a~~ 794 (1010)
.. |..---| .+..+++.++...+.
T Consensus 623 ~~YcrEaGVRnLqk~iekI~Rk~Al~vv~ 651 (906)
T KOG2004|consen 623 ERYCREAGVRNLQKQIEKICRKVALKVVE 651 (906)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 43 3221223 345556555444433
No 126
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.31 E-value=7.2e-12 Score=157.04 Aligned_cols=146 Identities=24% Similarity=0.281 Sum_probs=105.9
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-------
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------- 915 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~------- 915 (1010)
-+++.|++++++.+.+.+....... ...+.++||+||||||||++|+++|+.++.+++.++...+.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g 391 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRG 391 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcC
Confidence 3458899999999998776432111 11234799999999999999999999999999998764432
Q ss_pred --hhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc-------------ccCc
Q 001808 916 --NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-------------VLTG 980 (1010)
Q Consensus 916 --~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e-------------~~~~ 980 (1010)
..|+|.....+.+.|..+....| |+||||||++.+++.++ ..+.||+.||... ...+
T Consensus 392 ~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~ 463 (775)
T TIGR00763 392 HRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSK 463 (775)
T ss_pred CCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCC
Confidence 35888888888899998876666 89999999998543221 3567888877311 1147
Q ss_pred EEEEEeCCC-------CcCCcceEEEecCCC
Q 001808 981 VFVFAATRL-------EFFHYNVLLFCSFII 1004 (1010)
Q Consensus 981 v~viatTn~-------r~gR~d~~l~~~~p~ 1004 (1010)
+++|+|||. ...||+ .+.|+.++
T Consensus 464 v~~I~TtN~~~~i~~~L~~R~~-vi~~~~~~ 493 (775)
T TIGR00763 464 VIFIATANSIDTIPRPLLDRME-VIELSGYT 493 (775)
T ss_pred EEEEEecCCchhCCHHHhCCee-EEecCCCC
Confidence 899999999 345674 45555444
No 127
>PRK04195 replication factor C large subunit; Provisional
Probab=99.31 E-value=3.8e-11 Score=143.16 Aligned_cols=187 Identities=18% Similarity=0.297 Sum_probs=127.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
++.++.|.+..++.+.+.+..... ..++.++||+||||||||++|+++|++++ ..++.+++++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~-----------g~~~~~lLL~GppG~GKTtla~ala~el~------~~~ielnasd 74 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLK-----------GKPKKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASD 74 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhc-----------CCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEEcccc
Confidence 466788888888888777655432 22357899999999999999999999987 5677888876
Q ss_pred ccCCchhhHHHHHHHHHHHHH-h-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 632 LSLEKGPIIRQALSNFISEAL-D-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~-~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
.... ..+...+........ . ..+.+|+|||+|.+.+. . .. .....|.+.++.. .
T Consensus 75 ~r~~--~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~----~---d~----~~~~aL~~~l~~~-----------~ 130 (482)
T PRK04195 75 QRTA--DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN----E---DR----GGARAILELIKKA-----------K 130 (482)
T ss_pred cccH--HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc----c---ch----hHHHHHHHHHHcC-----------C
Confidence 5422 222222222211111 1 25679999999998521 0 00 1223344444421 1
Q ss_pred EEEEEecCCccccCh-hhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHH
Q 001808 710 IAFVASAQSLEKIPQ-SLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVD 786 (1010)
Q Consensus 710 v~vIattn~~~~L~~-~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~ 786 (1010)
..+|+++|.+..+.+ .+++ |. ..+.|++|+.+++..+++.++...++.++++.+..|+..+.| |++.++.
T Consensus 131 ~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain 201 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIN 201 (482)
T ss_pred CCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 346667787777766 5554 43 479999999999999999999988999999999999998776 5554443
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.31 E-value=8.9e-12 Score=155.41 Aligned_cols=146 Identities=21% Similarity=0.236 Sum_probs=114.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc----------CCcEEEEe
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~----------g~~~i~v~ 910 (1010)
..++++.|.++....+.+.+. .+...+++|+||||||||++|+.+|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~-------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLC-------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 467788888877776666553 2235689999999999999999999987 67899999
Q ss_pred cchhh--hhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCC
Q 001808 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATR 988 (1010)
Q Consensus 911 ~~el~--~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn 988 (1010)
...+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.+..+.+ ...+.+.|+..|. .+.+.+|+||+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~--~~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG--SMDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc--cHHHHHHHHHHHh----CCCeEEEEecC
Confidence 88887 4799999999999999998778999999999999876532222 1234566777664 45688888888
Q ss_pred C------------CcCCcceEEEecCCCcc
Q 001808 989 L------------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 989 ~------------r~gR~d~~l~~~~p~~~ 1006 (1010)
. ..+||. .++++.|+.+
T Consensus 320 ~~e~~~~~~~d~al~rRf~-~i~v~~p~~~ 348 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQ-KIDVGEPSIE 348 (731)
T ss_pred HHHHHHHhhhhHHHHHhCc-eEEeCCCCHH
Confidence 5 445897 6899999765
No 129
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=7.6e-11 Score=139.83 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=129.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
.++++.|.+..++.+.+.+.. ...+..+||+|||||||||+|+++|+.+.....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~--------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQ--------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 356777877776666554432 112344799999999999999999999853210
Q ss_pred -----eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001808 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1010)
Q Consensus 620 -----~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1010)
....+..++.+. ......++.....+-.......+.+++|||+|.+. ....+.|+..+
T Consensus 78 ~i~~~~h~dv~el~~~~--~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls---------------~~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS--NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS---------------KSAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC---------------HHHHHHHHHHH
Confidence 112345555542 22233444332222111122356799999998762 12234455555
Q ss_pred HhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcC
Q 001808 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (1010)
Q Consensus 695 d~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~ 774 (1010)
+.... .+.+|.+++.+..+.+.+.+ |.. .++|.+|+.++....++..+.+.++.++++.+..++..+.
T Consensus 141 Eep~~---------~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 141 EEPPE---------HVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HhCCC---------CEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 54322 36777778888888888888 665 7899999999999999999998899999999999999988
Q ss_pred CCChhhHHHHHHHHH
Q 001808 775 GYDAYDLEILVDRTV 789 (1010)
Q Consensus 775 g~s~~DL~~Lv~~A~ 789 (1010)
| +.+++.+++++++
T Consensus 209 G-dlR~aln~Lekl~ 222 (504)
T PRK14963 209 G-AMRDAESLLERLL 222 (504)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5566666666653
No 130
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.29 E-value=1.7e-11 Score=127.60 Aligned_cols=107 Identities=22% Similarity=0.403 Sum_probs=73.7
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhc
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig 920 (1010)
..++++.|+++++..+.-.+....+. -....++|||||||+||||||..+|++++.+|..++++.+-.
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k---- 88 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK---- 88 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S----
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh----
Confidence 67999999999999887766532111 122458999999999999999999999999999988865321
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcC
Q 001808 921 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG 974 (1010)
Q Consensus 921 ~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg 974 (1010)
..++..++... ....|||||||+.+ .+.+-..|+..|+.
T Consensus 89 --~~dl~~il~~l--~~~~ILFIDEIHRl-----------nk~~qe~LlpamEd 127 (233)
T PF05496_consen 89 --AGDLAAILTNL--KEGDILFIDEIHRL-----------NKAQQEILLPAMED 127 (233)
T ss_dssp --CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHC
T ss_pred --HHHHHHHHHhc--CCCcEEEEechhhc-----------cHHHHHHHHHHhcc
Confidence 23455566554 34679999999998 45678889999974
No 131
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.29 E-value=8.7e-11 Score=133.89 Aligned_cols=189 Identities=19% Similarity=0.269 Sum_probs=120.0
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccc
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1010)
+.++.|.+..++.+.+.+ .. +...++||+||||||||++|+++++++.... ....+.+++|+++
T Consensus 14 ~~~~~g~~~~~~~L~~~~----~~-----------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-~~~~~~~i~~~~~ 77 (337)
T PRK12402 14 LEDILGQDEVVERLSRAV----DS-----------PNLPHLLVQGPPGSGKTAAVRALARELYGDP-WENNFTEFNVADF 77 (337)
T ss_pred HHHhcCCHHHHHHHHHHH----hC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCcc-cccceEEechhhh
Confidence 456667666655554433 21 1123699999999999999999999986332 1134677788765
Q ss_pred cCCchhh--------------------HHHHHHHHHHHHHh-----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHH
Q 001808 633 SLEKGPI--------------------IRQALSNFISEALD-----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALT 687 (1010)
Q Consensus 633 ~~~~~~~--------------------~~~~l~~~f~~a~~-----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~ 687 (1010)
....... ....++.++..... ..+.+|+|||+|.+.. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~---------------~~~ 142 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE---------------DAQ 142 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------HHH
Confidence 3211000 11223333333222 2346999999988731 122
Q ss_pred HHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHH
Q 001808 688 KFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL 767 (1010)
Q Consensus 688 ~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~ 767 (1010)
..|...++.... ...+|.+++.+..+.+.+.+ |+. .+.+++|+.+++..+++..+.+.+..++++.+.
T Consensus 143 ~~L~~~le~~~~---------~~~~Il~~~~~~~~~~~L~s--r~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~ 210 (337)
T PRK12402 143 QALRRIMEQYSR---------TCRFIIATRQPSKLIPPIRS--RCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLE 210 (337)
T ss_pred HHHHHHHHhccC---------CCeEEEEeCChhhCchhhcC--Cce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 344555554332 13455566555667777777 653 689999999999999999999889899999999
Q ss_pred hHhhhcCCCChhhHHHHH
Q 001808 768 DVASKCDGYDAYDLEILV 785 (1010)
Q Consensus 768 ~la~~t~g~s~~DL~~Lv 785 (1010)
.++..+.| +.+++...+
T Consensus 211 ~l~~~~~g-dlr~l~~~l 227 (337)
T PRK12402 211 LIAYYAGG-DLRKAILTL 227 (337)
T ss_pred HHHHHcCC-CHHHHHHHH
Confidence 99998854 444443333
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.28 E-value=4.1e-11 Score=148.91 Aligned_cols=210 Identities=18% Similarity=0.261 Sum_probs=135.2
Q ss_pred cccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC-
Q 001808 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL- 634 (1010)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~- 634 (1010)
..|++..++.|++.+....... -..+..++|+||||+|||++++.+|+.++ ..+..+++.....
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~---------~~~g~~i~l~GppG~GKTtl~~~ia~~l~------~~~~~i~~~~~~d~ 388 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVN---------KIKGPILCLVGPPGVGKTSLGQSIAKATG------RKYVRMALGGVRDE 388 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcc---------cCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEcCCCCCH
Confidence 6677788888877775432211 12334699999999999999999999987 4455555544321
Q ss_pred --------CchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-----c-c
Q 001808 635 --------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-----E-K 700 (1010)
Q Consensus 635 --------~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-----~-~ 700 (1010)
.+.+.....+...+..+.... .|++|||+|.+.+ +..+ . ....|.+.++.-. . .
T Consensus 389 ~~i~g~~~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~---~~~g----~----~~~aLlevld~~~~~~~~d~~ 456 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSS---DMRG----D----PASALLEVLDPEQNVAFSDHY 456 (784)
T ss_pred HHhccchhccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhccc---ccCC----C----HHHHHHHHhccccEEEEeccc
Confidence 122223333444444443233 4899999999852 1111 1 1233444444210 0 0
Q ss_pred cCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh----------cccccChHHHHhHh
Q 001808 701 RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR----------RSLECSDEILLDVA 770 (1010)
Q Consensus 701 ~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~----------~~~~~~~~~l~~la 770 (1010)
........++++|+|+|.. .++++|++ |+. .+.+.+++.++..+|.+.++.. ..+.++++.+..++
T Consensus 457 ~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii 532 (784)
T PRK10787 457 LEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGII 532 (784)
T ss_pred ccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHH
Confidence 0011233579999999987 59999999 996 8999999999999999877641 12457888888877
Q ss_pred hh-cCCCChhhHHHHHHHHHHHHHHhh
Q 001808 771 SK-CDGYDAYDLEILVDRTVHAAVGRY 796 (1010)
Q Consensus 771 ~~-t~g~s~~DL~~Lv~~A~~~a~~r~ 796 (1010)
.. +..+-+|.++..+++.+...+.+.
T Consensus 533 ~~yt~e~GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 533 RYYTREAGVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred HhCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 53 455667888888888777666654
No 133
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=4e-11 Score=140.38 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=127.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++||||+|+|||+|++++++++.... ..+.++++..+.......++..-...|.... ....+|+|||++.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC
Confidence 4699999999999999999999885332 5577888766543322222211111233322 35679999999987521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcc---ccChhhhcCCccc--ccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD--FHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~---~L~~~L~r~gRf~--~~i~l~~P~~~e 745 (1010)
......+...+....+. . ..+++++...+. .+++.+.+ ||. ..+.+++|+.++
T Consensus 218 ---------~~~qeelf~l~N~l~~~----~-------k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 218 ---------GATQEEFFHTFNSLHTE----G-------KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEG 275 (445)
T ss_pred ---------hhhHHHHHHHHHHHHHC----C-------CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHH
Confidence 11123444444333321 1 234555544444 45688888 874 688999999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHH-HHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHA-AVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~-a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
|.+|++..+...++.+++++++.++....+ +.+.|...+.+.+.. +.... ....++.++...++.++
T Consensus 276 r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~----------~~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 276 LRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKL----------SHQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHh----------hCCCCCHHHHHHHHHHh
Confidence 999999999988899999999999998776 566676666665422 22221 11346777777777653
No 134
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.27 E-value=8.7e-11 Score=137.44 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=109.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++|+||||||||++|+++|+.++ ..+..+++... ....++..+.............+|||||+|.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~------~~~~~l~a~~~---~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~- 106 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATD------APFEALSAVTS---GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK- 106 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecccc---cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH-
Confidence 4799999999999999999999876 45666666532 2233333333332222233667999999998741
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecC--CccccChhhhcCCcccccccCCCCcHHHHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ--SLEKIPQSLTSSGRFDFHVQLPAPAASERKA 748 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn--~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~ 748 (1010)
.....|...++. +.+++|++++ ....+++++.+ |+ ..+.+++++.++...
T Consensus 107 --------------~~q~~LL~~le~-----------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 107 --------------AQQDALLPHVED-----------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQ 158 (413)
T ss_pred --------------HHHHHHHHHhhc-----------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHH
Confidence 112234443332 1366666543 34568899998 77 478999999999999
Q ss_pred HHHHHhhhc--cc-ccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 749 ILEHEIQRR--SL-ECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 749 IL~~~l~~~--~~-~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+++..+... ++ .++++.+..++..+.| +++.+.++++.++
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999877642 33 6788889999998865 5666666666554
No 135
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.3e-10 Score=137.98 Aligned_cols=194 Identities=16% Similarity=0.246 Sum_probs=130.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.|++++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~--------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALET--------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 456778888887776665532 1123458999999999999999999988632110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++... ....+.++..+..+-.........|+||||+|.+-. .-.+.|+..
T Consensus 80 ~~i~~~~~~dlieidaas--~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~---------------~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAAS--RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK---------------QSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeeccc--ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH---------------HHHHHHHHH
Confidence 01233333321 122344444443332222223456999999999731 233456666
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.+|++|+....+.+.+++ |.. .++|.+++.++....++..+.+.++.+++..+..++..+
T Consensus 143 LEepp~---------~v~fIL~Ttd~~kil~tI~S--Rc~-~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 143 LEEPPE---------YVKFILATTDYHKIPVTILS--RCI-QLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HhcCCC---------CceEEEEECChhhhhhhHHH--hee-eEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 36677777778888888888 664 789999999999999999888888889999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| +.+++.++++.++
T Consensus 211 ~G-dlR~alnlLek~i 225 (546)
T PRK14957 211 KG-SLRDALSLLDQAI 225 (546)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 6777777777654
No 136
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.26 E-value=1e-10 Score=125.77 Aligned_cols=160 Identities=17% Similarity=0.248 Sum_probs=108.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001808 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1010)
Q Consensus 589 ~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1010)
...+++|+||+|||||+|++++++.+.... ..+.+++|..+... + .......+|+|||+|.+-
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~~~------------~--~~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPLLA------------F--DFDPEAELYAVDDVERLD 103 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhHHH------------H--hhcccCCEEEEeChhhcC
Confidence 346799999999999999999999874222 46778888764311 1 112346799999999862
Q ss_pred cCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcc--ccChhhhcCCcc--cccccCCCCcHH
Q 001808 669 SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRF--DFHVQLPAPAAS 744 (1010)
Q Consensus 669 ~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~--~L~~~L~r~gRf--~~~i~l~~P~~~ 744 (1010)
+ .....+ ...++....... .+++++++..+. .+.+.+.+ || ...+++++|+.+
T Consensus 104 ~-----------~~~~~L----~~~~~~~~~~~~------~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~ 160 (227)
T PRK08903 104 D-----------AQQIAL----FNLFNRVRAHGQ------GALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDA 160 (227)
T ss_pred c-----------hHHHHH----HHHHHHHHHcCC------cEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHH
Confidence 1 111233 333333222111 134444433322 24566776 66 458899999999
Q ss_pred HHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 745 eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
++..+++......++.++++.+..++...+| +.+++..+++...
T Consensus 161 ~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~ 204 (227)
T PRK08903 161 DKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALD 204 (227)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 9999999888888899999999999997666 7888888887643
No 137
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.25 E-value=1.5e-10 Score=130.74 Aligned_cols=175 Identities=21% Similarity=0.326 Sum_probs=118.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
++.++.|.+...+.+...+.. ...+..+||+||+|+|||+++++++++++ ..+.+++|+.
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~lll~G~~G~GKT~la~~l~~~~~------~~~~~i~~~~ 78 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKK--------------GRIPNMLLHSPSPGTGKTTVAKALCNEVG------AEVLFVNGSD 78 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhC------ccceEeccCc
Confidence 456777777776666654431 12235577799999999999999999875 5677888877
Q ss_pred ccCCchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 632 LSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
+. ...++..+......... ..+.+|+|||+|.+.. . .....|...++.+.. .+
T Consensus 79 --~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~----~~~~~L~~~le~~~~---------~~ 132 (316)
T PHA02544 79 --CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------A----DAQRHLRSFMEAYSK---------NC 132 (316)
T ss_pred --cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------H----HHHHHHHHHHHhcCC---------Cc
Confidence 22 34444444443332221 3568999999988721 1 122334455554432 36
Q ss_pred EEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhh-------hcccccChHHHHhHhhhcCC
Q 001808 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ-------RRSLECSDEILLDVASKCDG 775 (1010)
Q Consensus 711 ~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~-------~~~~~~~~~~l~~la~~t~g 775 (1010)
.+|++++....+.+.+++ |+. .+.++.|+.+++.++++.++. ..+..++++.+..++....|
T Consensus 133 ~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 133 SFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred eEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 788899988889999998 886 789999999999877765433 34667788888888876655
No 138
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.3e-10 Score=140.13 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=131.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
.++++.|.+...+.+.+.+.. ...+..+||+||+|||||++|+.+|+.+.....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQ--------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 466788888777766665532 112355899999999999999999999863211
Q ss_pred ------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
....++.++.+. ......++..+..+..........|+||||+|+|.. .-.+.|+..
T Consensus 80 ~~i~~g~~~dv~eidaas--~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~---------------~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS--NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST---------------GAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 112344444432 223334443333322212223456999999999841 223344444
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+++|.+|+.++.+++.+++ |.. .+.|++|+.++....++..+.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 143 LEEPPA---------HVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred hcCCCC---------CeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 444322 36677677778889999888 765 678999999999999999999889999999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| +.++...++++++
T Consensus 211 ~G-~~R~al~~Ldq~~ 225 (559)
T PRK05563 211 EG-GMRDALSILDQAI 225 (559)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 7777777777654
No 139
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.9e-10 Score=136.68 Aligned_cols=193 Identities=20% Similarity=0.247 Sum_probs=129.5
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.+.++.|.+..++.+.+.+.. ...+.++||+||+|+|||++|+++|+.+......
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~--------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILN--------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 356777887777666654422 1223569999999999999999999998532110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++.+. ....+.++..+..+-.........|++|||+|.+-. .-.+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas--~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~---------------~A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS--NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST---------------SAWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc--ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH---------------HHHHHHHHH
Confidence 01233343322 123344444433322222223446999999998831 123345555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
++.... .+++|++|+.+..+.+.+++ |+. .+++++++.++....++..+.+.+..++++.+..++..+
T Consensus 143 LEEPp~---------~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS 210 (605)
T PRK05896 143 LEEPPK---------HVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA 210 (605)
T ss_pred HHhCCC---------cEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 555332 36777777778889989888 765 789999999999999999988888889999999999988
Q ss_pred CCCChhhHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRT 788 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A 788 (1010)
.| +++++..+++..
T Consensus 211 ~G-dlR~AlnlLekL 224 (605)
T PRK05896 211 DG-SLRDGLSILDQL 224 (605)
T ss_pred CC-cHHHHHHHHHHH
Confidence 87 566666666653
No 140
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1e-10 Score=140.69 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=129.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
+|++++|.+..++.+.+.+..- ..+..+||+||+|+|||++++.+|+.+.....
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~--------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ--------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 4667788777666665544221 12345799999999999999999999864210
Q ss_pred -----------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHH
Q 001808 620 -----------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1010)
Q Consensus 620 -----------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1010)
....++.++... ....+.++..+..+........-.|++|||+|+|-. .-.+
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas--~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~---------------~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS--NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN---------------TAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc--ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH---------------HHHH
Confidence 001233333322 223344444443322111122345999999999841 2233
Q ss_pred HHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHh
Q 001808 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1010)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~ 768 (1010)
.|+..+++... .+.+|.+|+.+..+.+.+++ |.. .++|..++.++..+.++..+.+.++.++++.+..
T Consensus 143 aLLKtLEEPP~---------~~~fIL~Ttd~~kil~TIlS--Rc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~ 210 (618)
T PRK14951 143 AMLKTLEEPPE---------YLKFVLATTDPQKVPVTVLS--RCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRL 210 (618)
T ss_pred HHHHhcccCCC---------CeEEEEEECCchhhhHHHHH--hce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45454544322 36777777778888888888 664 7899999999999999999988899999999999
Q ss_pred HhhhcCCCChhhHHHHHHHHHH
Q 001808 769 VASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 769 la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
|+..+.| +.+++.+++++++.
T Consensus 211 La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 211 LARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9998887 77788777776553
No 141
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.25 E-value=2.9e-10 Score=131.48 Aligned_cols=232 Identities=19% Similarity=0.165 Sum_probs=136.1
Q ss_pred cccchhhHHHHHHHHHHh-cCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC
Q 001808 556 LSWMGTTASDVINRIKVL-LSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1010)
Q Consensus 556 l~g~~~~~~~i~~~l~~l-l~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1010)
++|.+.+++.+...+... ...............+.+++||+||||||||++|+++|+.++ ..++.++|..+..
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~------~pf~~id~~~l~~ 146 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD------VPFAIADATTLTE 146 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC------CCceecchhhccc
Confidence 677888777665444211 110000000000112346799999999999999999999987 6777888887653
Q ss_pred -Cchh-hHHHHHHHHHHHH----HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc----ccCCc
Q 001808 635 -EKGP-IIRQALSNFISEA----LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSS 704 (1010)
Q Consensus 635 -~~~~-~~~~~l~~~f~~a----~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~ 704 (1010)
.+.+ ..+..+..++..+ ....++||||||+|.+...+..+... .......+...|+.+++.... .....
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~-~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~ 225 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSIT-RDVSGEGVQQALLKILEGTVASVPPQGGRK 225 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcC-CCcccHHHHHHHHHHHhcCeEEeCCCCCcC
Confidence 2333 2344455444432 23467899999999997432111110 001112455566666664210 01000
Q ss_pred --------cCCCcEEEEEecCCc--c------------------------------------------ccChhhhcCCcc
Q 001808 705 --------CGIGPIAFVASAQSL--E------------------------------------------KIPQSLTSSGRF 732 (1010)
Q Consensus 705 --------~~~~~v~vIattn~~--~------------------------------------------~L~~~L~r~gRf 732 (1010)
....++++|++.... + .+.|+|.. |+
T Consensus 226 ~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rl 303 (412)
T PRK05342 226 HPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RL 303 (412)
T ss_pred cCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CC
Confidence 111234444221100 0 02344444 89
Q ss_pred cccccCCCCcHHHHHHHHHH----Hhh-------hc--ccccChHHHHhHhhh--cCCCChhhHHHHHHHHHHHHHHhh
Q 001808 733 DFHVQLPAPAASERKAILEH----EIQ-------RR--SLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1010)
Q Consensus 733 ~~~i~l~~P~~~eR~~IL~~----~l~-------~~--~~~~~~~~l~~la~~--t~g~s~~DL~~Lv~~A~~~a~~r~ 796 (1010)
+..+.|.+.+.+++.+|+.. +++ .+ .+.++++++..|+.. ...+-+|.|+.++++.+...+.+.
T Consensus 304 d~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 304 PVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 98999999999999999872 322 22 345789999999986 467888999999998887776554
No 142
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.25 E-value=3.4e-10 Score=119.53 Aligned_cols=194 Identities=22% Similarity=0.284 Sum_probs=134.5
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..++.|.|++.+++.+++....++. ..+..++||+|+.|||||++++++..++.... ..++.+...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~-----------G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ-----------GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKE 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc-----------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHH
Confidence 4467899999999999998877765 44567899999999999999999999987544 445666655
Q ss_pred cccCCchhhHHHHHHHHHHHHH-hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 631 RLSLEKGPIIRQALSNFISEAL-DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~-~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
++.. +..++.... ...+-|||+||+. + .+++ .-...|...++.--.. ...+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLs--F-----e~~d-------~~yk~LKs~LeGgle~-----~P~N 141 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLS--F-----EEGD-------TEYKALKSVLEGGLEA-----RPDN 141 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCC--C-----CCCc-------HHHHHHHHHhcCcccc-----CCCc
Confidence 5442 333333333 2345699999973 2 1111 2234566666653322 2347
Q ss_pred EEEEEecCCccccChhhhc---------------------CCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHH-
Q 001808 710 IAFVASAQSLEKIPQSLTS---------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILL- 767 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r---------------------~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~- 767 (1010)
|++.+|+|+.+.++..+.. ..||...+.|.+|+.++-.+|+++++.+.++.++.+.+.
T Consensus 142 vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~ 221 (249)
T PF05673_consen 142 VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQ 221 (249)
T ss_pred EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999986654322211 139999999999999999999999999999988865433
Q ss_pred ---hHhhhcCCCChhhHHHHHH
Q 001808 768 ---DVASKCDGYDAYDLEILVD 786 (1010)
Q Consensus 768 ---~la~~t~g~s~~DL~~Lv~ 786 (1010)
..|....|.+++-....++
T Consensus 222 ~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 222 EALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHcCCCCHHHHHHHHH
Confidence 3445556777766555544
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.25 E-value=5.3e-11 Score=126.98 Aligned_cols=173 Identities=20% Similarity=0.376 Sum_probs=110.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHH-HHHHHHHHHHhcCCeEEEEccchhhhc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1010)
.+++||||+|+|||.|++++++++..... ...+.|+++.++.......+.. .+.+ |.... ....+|+|||++.+.+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~-~~~v~y~~~~~f~~~~~~~~~~~~~~~-~~~~~-~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHP-GKRVVYLSAEEFIREFADALRDGEIEE-FKDRL-RSADLLIIDDIQFLAG 111 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCT-TS-EEEEEHHHHHHHHHHHHHTTSHHH-HHHHH-CTSSEEEEETGGGGTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccc-cccceeecHHHHHHHHHHHHHcccchh-hhhhh-hcCCEEEEecchhhcC
Confidence 45999999999999999999998753211 1568888888766544333322 1222 22222 3557999999999852
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc---cChhhhcCCccc--ccccCCCCcHH
Q 001808 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAAS 744 (1010)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf~--~~i~l~~P~~~ 744 (1010)
.......+...+ +.....+ ..+++++...|.. +++.|.+ ||. ..+.+.+|+.+
T Consensus 112 ---------~~~~q~~lf~l~----n~~~~~~-------k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 112 ---------KQRTQEELFHLF----NRLIESG-------KQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDE 169 (219)
T ss_dssp ---------HHHHHHHHHHHH----HHHHHTT-------SEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HH
T ss_pred ---------chHHHHHHHHHH----HHHHhhC-------CeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHH
Confidence 111223444433 3333221 2455555555554 4678888 664 46899999999
Q ss_pred HHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 745 eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
.|.+|++..+..+++.+++++++.++....+ +.++|..++++..
T Consensus 170 ~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 170 DRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLD 213 (219)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHH
Confidence 9999999999999999999999999998776 6777777776654
No 144
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=1.5e-10 Score=143.89 Aligned_cols=194 Identities=16% Similarity=0.166 Sum_probs=134.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
+|.+++|.+..++.+.+.+.. ...+..+||+||+|||||++++.+|+.|.....
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~--------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDS--------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 466778877777666665432 112244899999999999999999999963211
Q ss_pred --------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH
Q 001808 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1010)
Q Consensus 620 --------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1010)
....++.++... ....+.++.....++.........|+||||+|+|-. .-.+.|+
T Consensus 79 ~~~~~g~~~~~dv~eidaas--~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~---------------~a~NaLL 141 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAAS--HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP---------------QGFNALL 141 (824)
T ss_pred HHHHcCCCCCCcEEEecccc--cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------HHHHHHH
Confidence 012234444322 123455555444443333334556999999999841 3344566
Q ss_pred HHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhh
Q 001808 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1010)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~ 771 (1010)
..+++... .++||++++..+.|.+.+++ |.. ++.|..++.++..++|+.++.+.++.++++.+..++.
T Consensus 142 K~LEEpP~---------~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 142 KIVEEPPE---------HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66665443 37777777888888888888 654 7889999999999999999988888899999998988
Q ss_pred hcCCCChhhHHHHHHHHH
Q 001808 772 KCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 772 ~t~g~s~~DL~~Lv~~A~ 789 (1010)
.+.| +.+++..++++.+
T Consensus 210 ~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8877 6777777777654
No 145
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=1.8e-10 Score=138.03 Aligned_cols=194 Identities=18% Similarity=0.192 Sum_probs=132.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
.|+++.|.+..++.+.+.+.. ...+..+||+||+|||||++|+++|+.+.....
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~--------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDA--------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 366778887777766665432 112244899999999999999999999863210
Q ss_pred --------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH
Q 001808 620 --------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1010)
Q Consensus 620 --------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1010)
....++.++.+.. ...+.++.....+..........|+||||+|++-. .-.+.|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~--~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH--GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------AGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc--cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH---------------HHHHHHH
Confidence 0123444544321 23455555444433322233456999999999841 2334455
Q ss_pred HHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhh
Q 001808 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVAS 771 (1010)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~ 771 (1010)
..+++... .+++|.+++.++.+.+.+++ |. ..++|..++.++..+.++.++.+.+..++++.+..++.
T Consensus 140 K~LEEpp~---------~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 140 KIVEEPPE---------HLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred HHHhcCCC---------CeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55555432 47777777888889999988 64 37899999999999999999988888899998888888
Q ss_pred hcCCCChhhHHHHHHHHH
Q 001808 772 KCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 772 ~t~g~s~~DL~~Lv~~A~ 789 (1010)
...| +.+++.++++..+
T Consensus 208 ~s~G-dlR~aln~Ldql~ 224 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQLL 224 (584)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 7766 6777777777654
No 146
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.24 E-value=2e-10 Score=141.68 Aligned_cols=214 Identities=15% Similarity=0.215 Sum_probs=141.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1010)
.+.|.+.+++.+.+.+....... .. ...|.+.+||+||||||||++|+++|+.++ ..++.++|+.+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl-----~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------~~~i~id~se~~~ 526 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL-----GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYME 526 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc-----cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhC------CCcEEeechhhcc
Confidence 56788999999988886532210 00 012345699999999999999999999986 5677788877543
Q ss_pred Cc---------hhhHHHHHHHHHHHH-HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--cccC
Q 001808 635 EK---------GPIIRQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRK 702 (1010)
Q Consensus 635 ~~---------~~~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~ 702 (1010)
.. .+.........+.++ ..+..+||||||+|++-+ .+.+.|+..++... ....
T Consensus 527 ~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---------------~v~~~LLq~ld~G~ltd~~g 591 (758)
T PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---------------DVFNLLLQVMDNGTLTDNNG 591 (758)
T ss_pred cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---------------HHHHHHHHHHhcCeeecCCC
Confidence 11 010000001122222 334558999999999842 45566666666432 1111
Q ss_pred CccCCCcEEEEEecCCc-------------------------cccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh-
Q 001808 703 SSCGIGPIAFVASAQSL-------------------------EKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR- 756 (1010)
Q Consensus 703 ~~~~~~~v~vIattn~~-------------------------~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~- 756 (1010)
......++++|+|+|.- ..+.|.|.. |++.++.|++.+.++..+|+..++.+
T Consensus 592 ~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~ 669 (758)
T PRK11034 592 RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVEL 669 (758)
T ss_pred ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 12233478899998821 124567776 99999999999999999998766542
Q ss_pred ------c--ccccChHHHHhHhhhc--CCCChhhHHHHHHHHHHHHHHhhc
Q 001808 757 ------R--SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRYL 797 (1010)
Q Consensus 757 ------~--~~~~~~~~l~~la~~t--~g~s~~DL~~Lv~~A~~~a~~r~~ 797 (1010)
+ .+.+++..++.|+... ..|.++.++.++++.+...+.+..
T Consensus 670 ~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 670 QAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 2 3457888888888653 456788999998888777766554
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=1.5e-10 Score=140.03 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=129.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCccee----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~---------- 621 (1010)
.+.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+.......
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~--------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKS--------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 466788888877776665532 11235589999999999999999999986421100
Q ss_pred -----eeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 001808 622 -----AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1010)
Q Consensus 622 -----~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (1010)
..++.++... ....+.++..+..+-.........|++|||+|.+-. .....|+..+++
T Consensus 82 ~~~~~~Dvieidaas--n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~---------------~A~NALLKtLEE 144 (725)
T PRK07133 82 NVNNSLDIIEMDAAS--NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK---------------SAFNALLKTLEE 144 (725)
T ss_pred hhcCCCcEEEEeccc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------HHHHHHHHHhhc
Confidence 0112222111 122333444333322222224456999999999841 223445555555
Q ss_pred hccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 697 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 697 ~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
... .+++|.+|+.++.+.+.+++ |+. .+.+.+++.++....++..+.+.++.++++.+..++..+.|
T Consensus 145 PP~---------~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G- 211 (725)
T PRK07133 145 PPK---------HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG- 211 (725)
T ss_pred CCC---------ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 332 36777777888899999888 776 78999999999999999988888888899889999998887
Q ss_pred ChhhHHHHHHHHH
Q 001808 777 DAYDLEILVDRTV 789 (1010)
Q Consensus 777 s~~DL~~Lv~~A~ 789 (1010)
+.+++..+++++.
T Consensus 212 slR~AlslLekl~ 224 (725)
T PRK07133 212 SLRDALSIAEQVS 224 (725)
T ss_pred CHHHHHHHHHHHH
Confidence 5666666666543
No 148
>PRK08727 hypothetical protein; Validated
Probab=99.24 E-value=2.3e-10 Score=123.44 Aligned_cols=162 Identities=23% Similarity=0.316 Sum_probs=107.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
..++|+|++|||||+|+++++.++.... ..+.+++..++.. .+.+.++.. ....+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCC
Confidence 4599999999999999999998875332 3455666544322 222333322 35579999999987521
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEec-CCcccc---ChhhhcCCcc--cccccCCCCcHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA-QSLEKI---PQSLTSSGRF--DFHVQLPAPAAS 744 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIatt-n~~~~L---~~~L~r~gRf--~~~i~l~~P~~~ 744 (1010)
......+.+ .++..... ...+|.|+ ..+..+ .+.+.+ || ...+.+++|+.+
T Consensus 109 ---------~~~~~~lf~----l~n~~~~~--------~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e 165 (233)
T PRK08727 109 ---------REDEVALFD----FHNRARAA--------GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDV 165 (233)
T ss_pred ---------hHHHHHHHH----HHHHHHHc--------CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHH
Confidence 111123333 33332211 13344444 455554 688888 76 457899999999
Q ss_pred HHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 745 ERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 745 eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
++.+|++.....+++.++++.+..++..+.| +.+.+.+++++..
T Consensus 166 ~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~ 209 (233)
T PRK08727 166 ARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLD 209 (233)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 9999999988878899999999999999875 3444444455444
No 149
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.7e-10 Score=138.11 Aligned_cols=195 Identities=20% Similarity=0.250 Sum_probs=129.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.++++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~divGq~~v~~~L~~~i~~--------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQ--------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHc--------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 456778888777766654432 1123458999999999999999999998642110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++.+. ....+.++..+.............|+||||+|.+-. .-.+.|+..
T Consensus 80 ~~i~~~~~~d~~ei~~~~--~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~---------------~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS--NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK---------------SAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc--cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH---------------HHHHHHHHH
Confidence 01233343322 223344444333322111123346999999998831 223345555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.+|.+|+.++.+.+.+++ |.. .++|++++.++....+...+.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIL~t~d~~kil~tI~S--Rc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s 210 (527)
T PRK14969 143 LEEPPE---------HVKFILATTDPQKIPVTVLS--RCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210 (527)
T ss_pred HhCCCC---------CEEEEEEeCChhhCchhHHH--HHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 555332 36777777778888877887 664 889999999999999998888888888999999999888
Q ss_pred CCCChhhHHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~~ 790 (1010)
.| +.+++.+++++++.
T Consensus 211 ~G-slr~al~lldqai~ 226 (527)
T PRK14969 211 AG-SMRDALSLLDQAIA 226 (527)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 76 67777777776653
No 150
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=2.6e-10 Score=134.84 Aligned_cols=195 Identities=18% Similarity=0.187 Sum_probs=130.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.+++++|.+...+.+...+.. ...+..+|||||+|+|||++|+++|+.+......
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~--------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDN--------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 466778887776666655422 1123457999999999999999999998532111
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++... ......++..+...-.........|++|||+|.+-. ...+.|+..
T Consensus 78 ~~~~~~~h~dv~eldaas--~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~---------------~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAAS--NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK---------------EAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEecccc--ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH---------------HHHHHHHHH
Confidence 01233333221 112334444333211111112235999999998831 334455666
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
++.... .+.+|.+++.+..+.+.+++ |.. .++|.+++.++..+.++..+.+.+..++++.+..++..+
T Consensus 141 LEEpp~---------~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 141 LEEPPS---------YVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred HhhcCC---------ceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 665432 36677777778889999999 744 889999999999999999998888999999999999988
Q ss_pred CCCChhhHHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~~ 790 (1010)
.| +.+++..++++++.
T Consensus 209 ~G-dlR~alnlLdqai~ 224 (535)
T PRK08451 209 NG-SLRDTLTLLDQAII 224 (535)
T ss_pred CC-cHHHHHHHHHHHHH
Confidence 87 77888888877664
No 151
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.23 E-value=2.2e-10 Score=131.58 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=126.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.++.+.|.+..++.+.+.+.. ...+..+||+||+|+|||++++++++.+......
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~--------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKN--------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 356777888888777765532 1223568999999999999999999998532110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHh----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1010)
...++.++... ...... +++++..+.. ....|++|||+|.+.. ...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~--~~~~~~----~~~l~~~~~~~p~~~~~~vviidea~~l~~---------------~~~~~ 136 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS--NNGVDD----IREILDNVKYAPSSGKYKVYIIDEVHMLSK---------------SAFNA 136 (355)
T ss_pred HHHhcCCCCCEEEeeccc--cCCHHH----HHHHHHHHhcCcccCCceEEEEeChhhcCH---------------HHHHH
Confidence 11233343321 112222 3344444332 2345999999988731 12233
Q ss_pred HHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhH
Q 001808 690 LVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDV 769 (1010)
Q Consensus 690 L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~l 769 (1010)
|...++.... .+.+|.++++++.+.+.+.+ |+. .+++++|+.+++.++++..+.+.+..++++.+..+
T Consensus 137 Ll~~le~~~~---------~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l 204 (355)
T TIGR02397 137 LLKTLEEPPE---------HVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI 204 (355)
T ss_pred HHHHHhCCcc---------ceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4444443221 36777777888888888888 765 78999999999999999999988888999999999
Q ss_pred hhhcCCCChhhHHHHHHHHH
Q 001808 770 ASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 770 a~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+..+.| +++.+.+.++++.
T Consensus 205 ~~~~~g-~~~~a~~~lekl~ 223 (355)
T TIGR02397 205 ARAADG-SLRDALSLLDQLI 223 (355)
T ss_pred HHHcCC-ChHHHHHHHHHHH
Confidence 988876 5666666665544
No 152
>PRK05642 DNA replication initiation factor; Validated
Probab=99.23 E-value=2.2e-10 Score=123.62 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=112.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++|+|++|+|||+|++++++++.... ..+.++++.++.... ..+++... ...+|+|||++.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGK 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCC
Confidence 5699999999999999999998875332 456788877765321 11222221 2358999999987421
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcccc---ChhhhcCCcc--cccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRF--DFHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L---~~~L~r~gRf--~~~i~l~~P~~~e 745 (1010)
......+...+ +.+...+ ..++++++..+..+ .+.+.+ || ...+.+.+|+.++
T Consensus 113 ---------~~~~~~Lf~l~----n~~~~~g-------~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~ 170 (234)
T PRK05642 113 ---------ADWEEALFHLF----NRLRDSG-------RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDED 170 (234)
T ss_pred ---------hHHHHHHHHHH----HHHHhcC-------CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHH
Confidence 11122344433 3332211 25666666555433 588888 77 3577899999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
|.++++..+..+++.+++++++.++...++ +.+.+..++++....+
T Consensus 171 ~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 171 KLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 999999777777889999999999999887 6677777777655433
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=2.4e-10 Score=138.36 Aligned_cols=194 Identities=21% Similarity=0.210 Sum_probs=130.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.+++++|.+..++.+.+.+.. ...+..+||+||+|+|||++++++|+.+......
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~--------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDT--------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 466788888777776665532 1223558999999999999999999998643210
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...+++++... ....+.++..+..+-.........|+||||+|++-. .-.+.|+..
T Consensus 80 ~~i~~g~~~d~~eid~~s--~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~---------------~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS--NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST---------------NAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccC--ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH---------------HHHHHHHHH
Confidence 11233444322 122334443332221111122345999999999841 223456666
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+++... .+.+|.+|+.++.+.+.+++ |.. .++|..++.++....+..++.+.++.++++.+..++..+
T Consensus 143 LEepp~---------~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 143 LEEPPP---------HVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHcCCC---------CeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 665432 37777788888899999988 765 789999999999999999998889999999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| +.+++..++++++
T Consensus 211 ~G-~lr~al~~Ldqli 225 (576)
T PRK14965 211 DG-SMRDSLSTLDQVL 225 (576)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 5566666665543
No 154
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.2e-10 Score=135.42 Aligned_cols=192 Identities=17% Similarity=0.228 Sum_probs=125.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
.|+++.|.+..++.+.+.+.. . ..+..+||+||+|+|||++|+.+|+.+.....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~----~----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQE----N----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHc----C----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 355677776665555443321 1 11246999999999999999999999864210
Q ss_pred ------eeeeEEEEecccccCCchhhHHHHHHHHHHH-HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001808 620 ------LVAHIVFVCCSRLSLEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1010)
Q Consensus 620 ------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~-a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1010)
....+++++... ....+.++. +.+.+.. .......|+||||+|.+-. ...+.|+.
T Consensus 80 ~~i~~g~hpDv~eId~a~--~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~---------------~a~naLLk 141 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS--NRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTR---------------EAFNALLK 141 (624)
T ss_pred HHHhcCCCCceEEEeccc--ccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCH---------------HHHHHHHH
Confidence 001234444322 122344443 2222222 2223456999999999831 22344555
Q ss_pred HHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh
Q 001808 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1010)
Q Consensus 693 ~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~ 772 (1010)
.+++... .+++|++|+.+..+.+.+++ |+. .++|++++.++...+|+..+.+.++.++++.+..++..
T Consensus 142 ~LEEP~~---------~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 142 TLEEPPA---------RVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HhhccCC---------CEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5554322 37788888888888888888 765 78999999999999999988888888999999999998
Q ss_pred cCCCChhhHHHHHHHH
Q 001808 773 CDGYDAYDLEILVDRT 788 (1010)
Q Consensus 773 t~g~s~~DL~~Lv~~A 788 (1010)
+.| +.+++..+++++
T Consensus 210 s~G-dlR~Al~lLeql 224 (624)
T PRK14959 210 AAG-SVRDSMSLLGQV 224 (624)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 877 455555555543
No 155
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.21 E-value=5.1e-11 Score=137.75 Aligned_cols=145 Identities=21% Similarity=0.259 Sum_probs=100.8
Q ss_pred CCCchhhHHHHHHHHhhccCCCcchhcc---CCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-hhhhc
Q 001808 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQ---APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIG 920 (1010)
Q Consensus 845 dI~Gl~~vk~~L~e~i~~~~k~~~~~~~---~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~-~~~ig 920 (1010)
.+.|++.+++.+...+....+....... ....+..++||+||||||||++|+++|..++.+|+.+++..+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3789999999987666422111110000 1113467999999999999999999999999999999998875 36888
Q ss_pred ccHHH-HHHHHHHH----hcCCCeEEEEeCCCccCCCCCCCC---CcchHHHHHHHHHHhcCcc-----------ccCcE
Q 001808 921 ASEQA-VRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVE-----------VLTGV 981 (1010)
Q Consensus 921 ~se~~-l~~lf~~A----~~~~p~VLfiDEid~l~~~R~~~~---~~~~~rv~~~lL~~ldg~e-----------~~~~v 981 (1010)
+.... +..+++.+ ....++|+||||+|.+.+++++.+ +-....+.+.||+.|||.. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 76444 45555432 234678999999999987754321 1112468899999998631 11357
Q ss_pred EEEEeCCC
Q 001808 982 FVFAATRL 989 (1010)
Q Consensus 982 ~viatTn~ 989 (1010)
++|+|+|-
T Consensus 232 ~~i~t~ni 239 (412)
T PRK05342 232 IQVDTTNI 239 (412)
T ss_pred EEeccCCc
Confidence 88888888
No 156
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=5.3e-10 Score=127.50 Aligned_cols=220 Identities=20% Similarity=0.254 Sum_probs=144.4
Q ss_pred cccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC
Q 001808 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1010)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1010)
+.+.+.+++++...+...+. ...|.++++||+||||||++++.+++++...... ..++++||..+.+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~-----------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-~~~~yINc~~~~t~ 86 (366)
T COG1474 19 LPHREEEINQLASFLAPALR-----------GERPSNIIIYGPTGTGKTATVKFVMEELEESSAN-VEVVYINCLELRTP 86 (366)
T ss_pred ccccHHHHHHHHHHHHHHhc-----------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-CceEEEeeeeCCCH
Confidence 66788899988888766554 3344569999999999999999999998643221 22899999886543
Q ss_pred ch--h--------------hHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001808 636 KG--P--------------IIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1010)
Q Consensus 636 ~~--~--------------~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1010)
+. . ...+.++.+.+.... ....|++|||+|.|..... .++..|.+..+..
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~------------~~LY~L~r~~~~~- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG------------EVLYSLLRAPGEN- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc------------hHHHHHHhhcccc-
Confidence 21 0 011122222222222 3556999999999973111 3444444444333
Q ss_pred cccCCccCCCcEEEEEecCCcc---ccChhhhcCCccc-ccccCCCCcHHHHHHHHHHHhhh--cccccChHHHHhHhhh
Q 001808 699 EKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFD-FHVQLPAPAASERKAILEHEIQR--RSLECSDEILLDVASK 772 (1010)
Q Consensus 699 ~~~~~~~~~~~v~vIattn~~~---~L~~~L~r~gRf~-~~i~l~~P~~~eR~~IL~~~l~~--~~~~~~~~~l~~la~~ 772 (1010)
...+.+|+.+|..+ .+++.+.+ +|. ..+.||+++.+|...|++..... ....++++.++.+|..
T Consensus 154 --------~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~ 223 (366)
T COG1474 154 --------KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAAL 223 (366)
T ss_pred --------ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 12488999998753 57888888 443 35899999999999999987764 2334677777666543
Q ss_pred ---cCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 773 ---CDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 773 ---t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
..| +++-...+++.|...|..+ ....++.++..+|...
T Consensus 224 ~a~~~G-DAR~aidilr~A~eiAe~~-----------~~~~v~~~~v~~a~~~ 264 (366)
T COG1474 224 VAAESG-DARKAIDILRRAGEIAERE-----------GSRKVSEDHVREAQEE 264 (366)
T ss_pred HHHcCc-cHHHHHHHHHHHHHHHHhh-----------CCCCcCHHHHHHHHHH
Confidence 334 5555567778888777655 3356777777777444
No 157
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.4e-10 Score=130.66 Aligned_cols=192 Identities=20% Similarity=0.221 Sum_probs=124.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc----eeeeEEEE
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~i 627 (1010)
.+++++|.+..++.+.+.+.. ...+.++|||||+|+|||++++++++.+..... ...++..+
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~--------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIEN--------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 456777888777776665532 122467999999999999999999999864211 00112122
Q ss_pred ecccccCCchhhHHHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCC
Q 001808 628 CCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 703 (1010)
Q Consensus 628 ~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~ 703 (1010)
..........+. +..++..+. ...+.+++|||+|.+.. ...+.|...++....
T Consensus 81 ~l~~~~~~~~~~----i~~l~~~~~~~p~~~~~kiviIDE~~~l~~---------------~~~~~ll~~le~~~~---- 137 (367)
T PRK14970 81 ELDAASNNSVDD----IRNLIDQVRIPPQTGKYKIYIIDEVHMLSS---------------AAFNAFLKTLEEPPA---- 137 (367)
T ss_pred EeccccCCCHHH----HHHHHHHHhhccccCCcEEEEEeChhhcCH---------------HHHHHHHHHHhCCCC----
Confidence 222111122233 333343332 23456999999998741 122334444443221
Q ss_pred ccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHH
Q 001808 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEI 783 (1010)
Q Consensus 704 ~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~ 783 (1010)
...+|.+++....+.+.+.+ |+. .+++++|+.++...++...+.+.++.++++.+..++..+.| +.+.+..
T Consensus 138 -----~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~ 208 (367)
T PRK14970 138 -----HAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALS 208 (367)
T ss_pred -----ceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 25566667777788888887 665 68999999999999999999888999999999999998766 6666666
Q ss_pred HHHHHH
Q 001808 784 LVDRTV 789 (1010)
Q Consensus 784 Lv~~A~ 789 (1010)
.+++..
T Consensus 209 ~lekl~ 214 (367)
T PRK14970 209 IFDRVV 214 (367)
T ss_pred HHHHHH
Confidence 666544
No 158
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.21 E-value=2.2e-10 Score=140.78 Aligned_cols=161 Identities=20% Similarity=0.325 Sum_probs=108.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHH-HhcCCeEEEEccchhhhc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA-LDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~ 669 (1010)
.+++|+||||||||++|+++++.+. ..+..++|.... ...++..+....... ......+|||||+|.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~------~~f~~lna~~~~---i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTR------AHFSSLNAVLAG---VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc------Ccceeehhhhhh---hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 4699999999999999999999876 455667765321 122333333221111 123457999999998731
Q ss_pred CCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCC--ccccChhhhcCCcccccccCCCCcHHHHH
Q 001808 670 SSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1010)
Q Consensus 670 ~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~--~~~L~~~L~r~gRf~~~i~l~~P~~~eR~ 747 (1010)
.....|...++. +.+++|++++. ...+++++.+ |.. .+.+++++.+++.
T Consensus 124 ---------------~qQdaLL~~lE~-----------g~IiLI~aTTenp~~~l~~aL~S--R~~-v~~l~pLs~edi~ 174 (725)
T PRK13341 124 ---------------AQQDALLPWVEN-----------GTITLIGATTENPYFEVNKALVS--RSR-LFRLKSLSDEDLH 174 (725)
T ss_pred ---------------HHHHHHHHHhcC-----------ceEEEEEecCCChHhhhhhHhhc--ccc-ceecCCCCHHHHH
Confidence 112223333332 13667765543 3457888888 643 6899999999999
Q ss_pred HHHHHHhh-------hcccccChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 748 AILEHEIQ-------RRSLECSDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 748 ~IL~~~l~-------~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
.+++..+. ..++.++++.+..++..+.| +.+.+.++++.++.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99998887 34567899999999998865 67777777777653
No 159
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=4.2e-10 Score=135.67 Aligned_cols=194 Identities=18% Similarity=0.232 Sum_probs=131.9
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCccee----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------- 621 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~---------- 621 (1010)
.|.+++|.+..++.+.+.+.. ...+.++||+||+|+|||++|+.+|+.+.......
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~--------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFET--------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 467888888877777665532 12246799999999999999999999986321100
Q ss_pred -------------eeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHH
Q 001808 622 -------------AHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTK 688 (1010)
Q Consensus 622 -------------~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~ 688 (1010)
..++.++... ....+.++..+..+-.........|+||||+|.+-. .-.+
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s--~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~---------------~a~n 150 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAAS--HTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST---------------AAFN 150 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH---------------HHHH
Confidence 0122233221 122344444433322222223456999999999831 2234
Q ss_pred HHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHh
Q 001808 689 FLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD 768 (1010)
Q Consensus 689 ~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~ 768 (1010)
.|+..+++... .+.+|.+++..+.+.+.+++ |.. .++|..++.++....++..+.+.+..++++.+..
T Consensus 151 aLLKtLEePp~---------~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~l 218 (598)
T PRK09111 151 ALLKTLEEPPP---------HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALAL 218 (598)
T ss_pred HHHHHHHhCCC---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 45555555432 36677777777778888888 765 7899999999999999999998899999999999
Q ss_pred HhhhcCCCChhhHHHHHHHHH
Q 001808 769 VASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 769 la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
++..+.| +.+++..++++++
T Consensus 219 Ia~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 219 IARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHcCC-CHHHHHHHHHHHH
Confidence 9998887 6777777776654
No 160
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.19 E-value=8.6e-11 Score=135.05 Aligned_cols=146 Identities=20% Similarity=0.303 Sum_probs=100.6
Q ss_pred CCCCchhhHHHHHHHHhhccCCCcchhccCC----C-CCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-hh
Q 001808 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAP----L-RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NK 917 (1010)
Q Consensus 844 ~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~----l-r~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~-~~ 917 (1010)
+.+.|++++++.+...+....+........+ + ...+++||+||||||||++|+++|..++.+|..+++..+. ..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 3478999999999877632111110000001 1 1257999999999999999999999999999999888765 35
Q ss_pred hhcccH-HHHHHHHHHH----hcCCCeEEEEeCCCccCCCCCCCCC--c-chHHHHHHHHHHhcCccc-----------c
Q 001808 918 YIGASE-QAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNT--G-VTDRVVNQFLTELDGVEV-----------L 978 (1010)
Q Consensus 918 ~ig~se-~~l~~lf~~A----~~~~p~VLfiDEid~l~~~R~~~~~--~-~~~rv~~~lL~~ldg~e~-----------~ 978 (1010)
|+|... ..+..+++.+ ....++||||||+|.+.+++.+.+. . ....+.+.||+.|+|... .
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 888753 3445555433 2346779999999999986543221 1 123689999999987431 2
Q ss_pred CcEEEEEeCCC
Q 001808 979 TGVFVFAATRL 989 (1010)
Q Consensus 979 ~~v~viatTn~ 989 (1010)
.+.++|.|+|-
T Consensus 237 ~~~i~i~TsNi 247 (413)
T TIGR00382 237 QEFIQIDTSNI 247 (413)
T ss_pred CCeEEEEcCCc
Confidence 46889999998
No 161
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=4.4e-10 Score=134.98 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=131.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.+.++.|.+..++.+...+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIES--------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 466788888888777665532 1123569999999999999999999998632110
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++... ....+.++.....+..........|++|||+|.+-. ...+.|+..
T Consensus 80 ~~i~~~~~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~---------------~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN---------------SAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH---------------HHHHHHHHh
Confidence 01222232211 122334444333322222234556999999998831 223345555
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
++.... .+.+|++++.+..+.+.+++ |+. .+++.+++.++..++++..+...++.++++.+..++...
T Consensus 143 LEepp~---------~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s 210 (563)
T PRK06647 143 IEEPPP---------YIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKS 210 (563)
T ss_pred hccCCC---------CEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 554322 47777777777889889988 766 688999999999999999888888889999999999988
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| +.+++..++++++
T Consensus 211 ~G-dlR~alslLdkli 225 (563)
T PRK06647 211 TG-SVRDAYTLFDQVV 225 (563)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 87 6777777777654
No 162
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.18 E-value=3.4e-11 Score=123.19 Aligned_cols=112 Identities=24% Similarity=0.369 Sum_probs=79.8
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCC----cEEEEecchhhhhhhcccHHHHHHHHHHH----hcCCCeEEEEeCCC
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL----RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFD 947 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~----~~i~v~~~el~~~~ig~se~~l~~lf~~A----~~~~p~VLfiDEid 947 (1010)
||...+||+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+ ......|+||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 46789999999999999999999999996 9999999988761 11111122222211 11111299999999
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHhcCccc---------cCcEEEEEeCCC
Q 001808 948 SIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATRL 989 (1010)
Q Consensus 948 ~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~---------~~~v~viatTn~ 989 (1010)
++.++.++..+-....|.+.||+.||+..- .+++++|+|+|-
T Consensus 79 Ka~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 79 KAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp GCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred hccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 999875445555566899999999985321 258999999997
No 163
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=2.9e-10 Score=133.59 Aligned_cols=196 Identities=16% Similarity=0.257 Sum_probs=128.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHH---HHHHHHHHHHhcCCeEEEEccchhh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ---ALSNFISEALDHAPSIVIFDNLDSI 667 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~---~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1010)
.+++|||++|+|||+|++++++++..... ...+.++++.++.......+.. .+...... .....+|+|||++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l 218 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFL 218 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEeccccc
Confidence 45999999999999999999998753211 1567788888766544333322 12222111 245679999999887
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc---cChhhhcCCccc--ccccCCCCc
Q 001808 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPA 742 (1010)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf~--~~i~l~~P~ 742 (1010)
.+ .......+...+....+. + ..+++++...+.. +++.+.+ ||. ..+.+.+|+
T Consensus 219 ~~---------k~~~~e~lf~l~N~~~~~----~-------k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd 276 (450)
T PRK14087 219 SY---------KEKTNEIFFTIFNNFIEN----D-------KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLD 276 (450)
T ss_pred cC---------CHHHHHHHHHHHHHHHHc----C-------CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcC
Confidence 42 111223444444333322 1 1234444444433 5678888 764 567999999
Q ss_pred HHHHHHHHHHHhhhccc--ccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhh
Q 001808 743 ASERKAILEHEIQRRSL--ECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAM 820 (1010)
Q Consensus 743 ~~eR~~IL~~~l~~~~~--~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al 820 (1010)
.++|.+|+++.+...++ .++++++..|+..+.| +++.+..++.+....+.... ....++.+.+.+++
T Consensus 277 ~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~----------~~~~it~~~v~~~l 345 (450)
T PRK14087 277 NKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP----------EEKIITIEIVSDLF 345 (450)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc----------CCCCCCHHHHHHHH
Confidence 99999999999987665 6899999999999888 78888888887764443220 01346666767666
Q ss_pred hc
Q 001808 821 HE 822 (1010)
Q Consensus 821 ~~ 822 (1010)
.+
T Consensus 346 ~~ 347 (450)
T PRK14087 346 RD 347 (450)
T ss_pred hh
Confidence 55
No 164
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-10 Score=135.92 Aligned_cols=149 Identities=22% Similarity=0.324 Sum_probs=113.0
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh------
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------ 915 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~------ 915 (1010)
.-+|-.|++++|+.+.|++....- .+-..+.-++|+||||+|||++|+.+|+.+|..|++++..-+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kL-------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKL-------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhh-------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 345778999999999999874311 1223456788999999999999999999999999998765443
Q ss_pred ---hhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc-------------cC
Q 001808 916 ---NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-------------LT 979 (1010)
Q Consensus 916 ---~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~-------------~~ 979 (1010)
.-|+|+....+-+-++.++-..| +++|||+|++. +|+..+- -..||..||.-.. ..
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~qGDP-----asALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQGDP-----ASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCCCCh-----HHHHHHhcChhhccchhhhccccccchh
Confidence 24999999999999999988888 88899999997 3332221 2468888874221 13
Q ss_pred cEEEEEeCCC----CcCCcceEEEecCCCc
Q 001808 980 GVFVFAATRL----EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 980 ~v~viatTn~----r~gR~d~~l~~~~p~~ 1005 (1010)
.|++|||.|. .+--+||+=-+.+|.|
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGY 583 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGY 583 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCc
Confidence 7999999999 3335677777777766
No 165
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=9.3e-10 Score=129.44 Aligned_cols=193 Identities=21% Similarity=0.235 Sum_probs=128.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.+.+++|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~--------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRF--------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 466788888777766665532 1123569999999999999999999998532100
Q ss_pred --------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001808 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1010)
Q Consensus 621 --------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1010)
...++.++.... ...+.++.....+-.........|++|||+|.+.. ...+.|..
T Consensus 81 C~~i~~~~~~d~~~i~g~~~--~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~---------------~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH--RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK---------------EAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc--CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH---------------HHHHHHHH
Confidence 012333332211 12234443332222222224567999999998841 22344555
Q ss_pred HHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh
Q 001808 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1010)
Q Consensus 693 ~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~ 772 (1010)
.++.... .+.+|++++....+.+.+++ |+. .+++++++.++....++..+.+.+..++++.+..++..
T Consensus 144 ~lEep~~---------~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 144 TLEEPPQ---------HVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HhhcCCC---------CceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5555322 36677777777888888888 765 78999999999999999988888888999999999998
Q ss_pred cCCCChhhHHHHHHHH
Q 001808 773 CDGYDAYDLEILVDRT 788 (1010)
Q Consensus 773 t~g~s~~DL~~Lv~~A 788 (1010)
+.| +.+++..+++..
T Consensus 212 s~g-dlr~a~~~Lekl 226 (451)
T PRK06305 212 AQG-SLRDAESLYDYV 226 (451)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 876 556666666554
No 166
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=3.1e-10 Score=134.26 Aligned_cols=194 Identities=18% Similarity=0.233 Sum_probs=125.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.+.++.|.+...+.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+......
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~--------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKL--------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred cHHHccChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 356777887777766665522 1123458999999999999999999998631100
Q ss_pred -------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 621 -------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 621 -------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
...++.++.+. ....+.++.....+-.........|++|||+|.+.. ...+.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas--~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~---------------~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS--NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK---------------EAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc--CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH---------------HHHHHHHHH
Confidence 01122232211 122233333222211111223456999999998731 222334444
Q ss_pred HHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 694 MDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 694 ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
++.... .+++|.+++..+.+.+.+.+ |+. .+.+++++.+++..+++.++...++.++++.+..++..+
T Consensus 143 LEepp~---------~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s 210 (486)
T PRK14953 143 LEEPPP---------RTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQAS 210 (486)
T ss_pred HhcCCC---------CeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 444321 25566666667778888887 665 789999999999999999999888899999999999888
Q ss_pred CCCChhhHHHHHHHHH
Q 001808 774 DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 774 ~g~s~~DL~~Lv~~A~ 789 (1010)
.| +.+++..+++.++
T Consensus 211 ~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 211 EG-GMRDAASLLDQAS 225 (486)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 6677777777664
No 167
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.16 E-value=6.5e-10 Score=125.68 Aligned_cols=212 Identities=18% Similarity=0.212 Sum_probs=132.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
.+.++.|.+..++.+...+.. ....+++|+||+|||||++++++++.+..... ...++.+++++
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~---------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~ 78 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKE---------------KNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASD 78 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhC---------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEecccc
Confidence 355566777766666554421 11135999999999999999999999853321 13345555443
Q ss_pred ccCCchhhHHHHHHHHHHHHHh--cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 632 LSLEKGPIIRQALSNFISEALD--HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~a~~--~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+ .......+......... ..+.+++|||+|.+.. .....|...++.... .
T Consensus 79 ~~~--~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------~~~~~L~~~le~~~~---------~ 132 (319)
T PRK00440 79 ERG--IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------DAQQALRRTMEMYSQ---------N 132 (319)
T ss_pred ccc--hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH---------------HHHHHHHHHHhcCCC---------C
Confidence 221 12222333333222111 2356999999988741 112334444544332 2
Q ss_pred EEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHH
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
..+|.+++....+.+.+.+ |+. .+++++++.++...+++.++.+.+..++++.+..++..+.| +.+.+...++.++
T Consensus 133 ~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~ 208 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAA 208 (319)
T ss_pred CeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 4566666766777777777 665 68999999999999999999988999999999999998776 4444444444433
Q ss_pred HHHHHhhcccCCcccccccCcccccchhhhhhcccc
Q 001808 790 HAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 790 ~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
.. ...++.+++.+++....+
T Consensus 209 ~~----------------~~~it~~~v~~~~~~~~~ 228 (319)
T PRK00440 209 AT----------------GKEVTEEAVYKITGTARP 228 (319)
T ss_pred Hc----------------CCCCCHHHHHHHhCCCCH
Confidence 11 124677777666554433
No 168
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.16 E-value=1e-10 Score=129.36 Aligned_cols=114 Identities=21% Similarity=0.414 Sum_probs=83.3
Q ss_pred CCcCCCCchhhHH---HHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhh
Q 001808 841 SGWDDVGGLTDIQ---NAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk---~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~ 917 (1010)
..++++.|++.+. ..+..+++. ..-.+++|||||||||||+|+++|...+.+|..++.
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA------ 81 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA------ 81 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc------
Confidence 4577777776643 334444431 223589999999999999999999999999999987
Q ss_pred hhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 918 YIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 918 ~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
+-.+-+.+|.++++|+.. ...|||+|||+.+- +.-...||-.|. .+.+++|+||-.
T Consensus 82 -v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQD~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 82 -VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQDALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhhhhhhhhhc----CCeEEEEeccCC
Confidence 334557799999999543 35799999999984 335677999984 344555655543
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.16 E-value=1.3e-10 Score=146.76 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=111.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc----------CCcEEEEe
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~----------g~~~i~v~ 910 (1010)
..|+++.|-++..+.+.+.+. .+...+++|+||||||||++|+.+|... +.+++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 458889998888888877764 2345689999999999999999999886 47899999
Q ss_pred cchhh--hhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCC
Q 001808 911 GPELL--NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATR 988 (1010)
Q Consensus 911 ~~el~--~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn 988 (1010)
...++ .+|.|+.++.++.+|+.+....++||||||+|.+.+.++.. .+. .+.+.|...|. ++.+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~~--~~a~lLkp~l~----rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GAI--DAANILKPALA----RGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Ccc--cHHHHhHHHHh----CCCcEEEEeCC
Confidence 98887 47899999999999999988889999999999998765422 111 23444555553 56688888888
Q ss_pred C------------CcCCcceEEEecCCCc
Q 001808 989 L------------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 989 ~------------r~gR~d~~l~~~~p~~ 1005 (1010)
. .-+||.. +.++.|+.
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~-I~v~ep~~ 343 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQP-VYVGEPSV 343 (821)
T ss_pred HHHHHHHHhcCHHHHhcceE-EecCCCCH
Confidence 6 4567865 56666664
No 170
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=8.4e-10 Score=127.13 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=118.7
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD------------ 619 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~------------ 619 (1010)
.+++++|.+..++.+.+.+..-.. .+..++...+..+||+||+|+|||++|+++|+.+.....
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~-----~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~ 77 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA-----DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACR 77 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc-----cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHH
Confidence 356788888888887776644221 112223334577999999999999999999998753310
Q ss_pred -----eeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001808 620 -----LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1010)
Q Consensus 620 -----~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1010)
....+.++.... .....+.++..+.............|+||||+|.+-. .-.+.|+..+
T Consensus 78 ~~~~~~hpD~~~i~~~~-~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~---------------~aanaLLk~L 141 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEG-LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE---------------RAANALLKAV 141 (394)
T ss_pred HHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------HHHHHHHHHh
Confidence 001122333322 1122334443332222222223446999999999841 2224455555
Q ss_pred HhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcC
Q 001808 695 DEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCD 774 (1010)
Q Consensus 695 d~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~ 774 (1010)
++... ++.+|.+++.++.+.+.+++ |.. .+.|++|+.++..++|... . .++++....++..+.
T Consensus 142 Eep~~---------~~~fIL~a~~~~~llpTIrS--Rc~-~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la~~s~ 204 (394)
T PRK07940 142 EEPPP---------RTVWLLCAPSPEDVLPTIRS--RCR-HVALRTPSVEAVAEVLVRR---D--GVDPETARRAARASQ 204 (394)
T ss_pred hcCCC---------CCeEEEEECChHHChHHHHh--hCe-EEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHHHHcC
Confidence 55332 24455555558889999998 775 8999999999987777631 1 245667778888888
Q ss_pred CCChhhHHH
Q 001808 775 GYDAYDLEI 783 (1010)
Q Consensus 775 g~s~~DL~~ 783 (1010)
|..++.+.-
T Consensus 205 G~~~~A~~l 213 (394)
T PRK07940 205 GHIGRARRL 213 (394)
T ss_pred CCHHHHHHH
Confidence 876654433
No 171
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.8e-10 Score=135.17 Aligned_cols=149 Identities=22% Similarity=0.264 Sum_probs=112.8
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-------
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL------- 915 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~------- 915 (1010)
-.|..|++++|+.+.+++...... +-..+.-+||+||||+|||+|++.+|+.+|..|+++...-+-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRG 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLT-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRG 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHh-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcc
Confidence 356789999999999998743211 122345688999999999999999999999999999764432
Q ss_pred --hhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc-------------cCc
Q 001808 916 --NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-------------LTG 980 (1010)
Q Consensus 916 --~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~-------------~~~ 980 (1010)
.-|+|+....+-+-..+|+...| +++|||||++..+-.++.. ..||..||.-.. ...
T Consensus 395 HRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 395 HRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred ccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhh
Confidence 24999999999999999988888 8999999999765333332 358888874211 137
Q ss_pred EEEEEeCCC---Cc-CCcceEEEecCCCcc
Q 001808 981 VFVFAATRL---EF-FHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 981 v~viatTn~---r~-gR~d~~l~~~~p~~~ 1006 (1010)
|++|||.|. -| --+||+=-..++.|.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt 496 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYT 496 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCC
Confidence 999999998 22 246777777777764
No 172
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.14 E-value=8.2e-10 Score=125.20 Aligned_cols=136 Identities=19% Similarity=0.280 Sum_probs=84.1
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc-ccCCccCCCcEEEEEecC----CccccChhhhcC
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE-KRKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~-~~~~~~~~~~v~vIattn----~~~~L~~~L~r~ 729 (1010)
+.+|+||||+|+++.+......+.+ ...+.+.|+.+++.-.- .........++++|++.- .+.++-|.|.-
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS---~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G- 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVS---REGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG- 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCC---ccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 4569999999999854321111111 12344555555554221 111233445788887753 34556667766
Q ss_pred CcccccccCCCCcHHHHHHHHH----HHhh-------hc--ccccChHHHHhHhhhc-------CCCChhhHHHHHHHHH
Q 001808 730 GRFDFHVQLPAPAASERKAILE----HEIQ-------RR--SLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 730 gRf~~~i~l~~P~~~eR~~IL~----~~l~-------~~--~~~~~~~~l~~la~~t-------~g~s~~DL~~Lv~~A~ 789 (1010)
||+..+.+.+++.++...||. .+++ .. .+.++++.+..+|... ++.-++-|..++++.+
T Consensus 323 -R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 323 -RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 2222 22 2457888888777764 4556677777777766
Q ss_pred HHHHHh
Q 001808 790 HAAVGR 795 (1010)
Q Consensus 790 ~~a~~r 795 (1010)
......
T Consensus 402 ~d~~fe 407 (441)
T TIGR00390 402 EDISFE 407 (441)
T ss_pred HHHHhc
Confidence 555433
No 173
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.14 E-value=2e-10 Score=144.89 Aligned_cols=145 Identities=22% Similarity=0.289 Sum_probs=109.9
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc----------CCcEEEEe
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~----------g~~~i~v~ 910 (1010)
..++++.|.+.....+.+.+. .+...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 457788888876555555543 2345689999999999999999999987 67899998
Q ss_pred cchhh--hhhhcccHHHHHHHHHHHh-cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeC
Q 001808 911 GPELL--NKYIGASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1010)
Q Consensus 911 ~~el~--~~~ig~se~~l~~lf~~A~-~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatT 987 (1010)
...++ .+|.|+.++.++.+|..+. ...++||||||++.+.+.++.+ ++ ....+.|+..|. .+.+.+|+||
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-~~--~d~~~~lkp~l~----~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-GA--MDAGNMLKPALA----RGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-cc--hhHHHHhcchhh----cCCCeEEEcC
Confidence 88876 4688999999999999864 4578999999999998765322 11 223455655553 5678999999
Q ss_pred CC------------CcCCcceEEEecCCCcc
Q 001808 988 RL------------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 988 n~------------r~gR~d~~l~~~~p~~~ 1006 (1010)
+. ..+||+. |+++.|+.+
T Consensus 315 t~~e~r~~~~~d~al~rRf~~-i~v~eP~~~ 344 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQK-VFVAEPSVE 344 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCE-EEeCCCCHH
Confidence 87 4458984 778888754
No 174
>PRK06620 hypothetical protein; Validated
Probab=99.14 E-value=6.1e-10 Score=118.28 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=99.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
..++||||+|||||+|++++++..+ .. ++...... .+.+ ....+|+|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------~~--~~~~~~~~-----------~~~~-----~~~d~lliDdi~~~~-- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------AY--IIKDIFFN-----------EEIL-----EKYNAFIIEDIENWQ-- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------CE--Ecchhhhc-----------hhHH-----hcCCEEEEeccccch--
Confidence 5699999999999999999988754 21 12211110 0111 233689999998541
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc--cChhhhcCCccc--ccccCCCCcHHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD--FHVQLPAPAASER 746 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~--L~~~L~r~gRf~--~~i~l~~P~~~eR 746 (1010)
...+...+....+. +..++++++..+.. + ++|++ |+. ..+.+.+|+.+++
T Consensus 99 ------------~~~lf~l~N~~~e~-----------g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 99 ------------EPALLHIFNIINEK-----------QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELI 152 (214)
T ss_pred ------------HHHHHHHHHHHHhc-----------CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHH
Confidence 01344333333222 12566666655554 5 77888 664 4689999999999
Q ss_pred HHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHH
Q 001808 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 747 ~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A 788 (1010)
.++++..+..+++.+++++++.++....+ +.+.+..++++.
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 99999988888899999999999999877 666777777664
No 175
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.14 E-value=1.9e-10 Score=130.26 Aligned_cols=89 Identities=24% Similarity=0.363 Sum_probs=65.8
Q ss_pred CCCchhhHHHHHHHHhhccCCCcchhccC-CCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhh-hhhc-c
Q 001808 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQA-PLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG-A 921 (1010)
Q Consensus 845 dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~-~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~-~~ig-~ 921 (1010)
-+.|++++++.+...+....+........ .-.++.++||+||||||||++|+++|..++.+|+.+++.++.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999999977765321111111100 1123479999999999999999999999999999999998874 6888 5
Q ss_pred cHHHHHHHHHHH
Q 001808 922 SEQAVRDIFSKA 933 (1010)
Q Consensus 922 se~~l~~lf~~A 933 (1010)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 667777777766
No 176
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.13 E-value=7.5e-10 Score=127.36 Aligned_cols=198 Identities=20% Similarity=0.245 Sum_probs=123.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC-Cchhh-HHHHHHHHHHHH----HhcCCeEEEEcc
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL-EKGPI-IRQALSNFISEA----LDHAPSIVIFDN 663 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~-~~~~~-~~~~l~~~f~~a----~~~~PsIL~IDE 663 (1010)
.+++||+||||||||++|+++|+.++ ..+..+++..+.. .+.+. .+..+...+..+ ....++||||||
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~------~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDE 189 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDE 189 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcC------CCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecc
Confidence 46799999999999999999999886 5566777777652 23332 345555554433 234678999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc----ccCCccCCCcEEEEEecCCc--------------------
Q 001808 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRKSSCGIGPIAFVASAQSL-------------------- 719 (1010)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~~~~~~~~v~vIattn~~-------------------- 719 (1010)
+|.+.+.+..+.... ......+.+.|+..++.... .........+.++|.|+|-.
T Consensus 190 Idkl~~~~~~~s~~~-dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~ 268 (413)
T TIGR00382 190 IDKISRKSENPSITR-DVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGK 268 (413)
T ss_pred cchhchhhccccccc-cccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhh
Confidence 999975322111110 00011344455555543221 11111112345556555530
Q ss_pred -------c-----------------------ccChhhhcCCcccccccCCCCcHHHHHHHHHHH----hh---------h
Q 001808 720 -------E-----------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE----IQ---------R 756 (1010)
Q Consensus 720 -------~-----------------------~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~----l~---------~ 756 (1010)
+ .+.|+|.. |++..+.|.+.+.+++.+|+... ++ .
T Consensus 269 ~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~g 346 (413)
T TIGR00382 269 SSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDN 346 (413)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0 02244443 89988999999999999998642 22 1
Q ss_pred cccccChHHHHhHhhh--cCCCChhhHHHHHHHHHHHHHHhh
Q 001808 757 RSLECSDEILLDVASK--CDGYDAYDLEILVDRTVHAAVGRY 796 (1010)
Q Consensus 757 ~~~~~~~~~l~~la~~--t~g~s~~DL~~Lv~~A~~~a~~r~ 796 (1010)
..+.+++++++.++.. ...+.+|.|+.++++.+...+...
T Consensus 347 i~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 347 VELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred eEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 2345788999999986 456788999999998887776554
No 177
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.12 E-value=1.8e-10 Score=130.60 Aligned_cols=88 Identities=25% Similarity=0.390 Sum_probs=66.7
Q ss_pred CCCchhhHHHHHHHHhhccCCCcchhcc--CCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhh-hhhc-
Q 001808 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQ--APLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG- 920 (1010)
Q Consensus 845 dI~Gl~~vk~~L~e~i~~~~k~~~~~~~--~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~-~~ig- 920 (1010)
.+.|++++++.+...+....+...+... .+. .+.++||+||||||||++|+++|..++.+|+.++++++.. .|+|
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~-~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEV-TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCccccccc-CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 4889999999998777432111111111 111 2479999999999999999999999999999999998885 6988
Q ss_pred ccHHHHHHHHHHH
Q 001808 921 ASEQAVRDIFSKA 933 (1010)
Q Consensus 921 ~se~~l~~lf~~A 933 (1010)
..+..++.+|..|
T Consensus 95 d~e~~ir~L~~~A 107 (443)
T PRK05201 95 DVESIIRDLVEIA 107 (443)
T ss_pred CHHHHHHHHHHHH
Confidence 4467778887777
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.12 E-value=8.7e-10 Score=125.36 Aligned_cols=195 Identities=18% Similarity=0.281 Sum_probs=138.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+++|||+.|+|||.|+++++.+...... .+.++++..+.+.......++..-.+-|.+.+ .-.+|+|||++.+.++
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 56999999999999999999998753322 25678888877765555555443344555555 4569999999998631
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcccc---ChhhhcCCccc--ccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI---PQSLTSSGRFD--FHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L---~~~L~r~gRf~--~~i~l~~P~~~e 745 (1010)
......+.+.|..+.+.- .-+++++...|..+ .+.|.+ ||. ..+.+.+|+.+.
T Consensus 191 ---------~~~qeefFh~FN~l~~~~-----------kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 191 ---------ERTQEEFFHTFNALLENG-----------KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDET 248 (408)
T ss_pred ---------hhHHHHHHHHHHHHHhcC-----------CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHH
Confidence 112346666666655431 24555555666654 488888 765 567999999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcc
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF 823 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~ 823 (1010)
|.+||+......++.++++++..++..... +.+++..++++....+... ...+|.+...++++..
T Consensus 249 r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~------------~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 249 RLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFT------------KRAITIDLVKEILKDL 313 (408)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhc------------CccCcHHHHHHHHHHh
Confidence 999999999999999999999999998776 6777777777665544322 1246666666666554
No 179
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.12 E-value=8.9e-10 Score=124.95 Aligned_cols=134 Identities=19% Similarity=0.273 Sum_probs=83.3
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc-cCCccCCCcEEEEEecC----CccccChhhhcC
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK-RKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~-~~~~~~~~~v~vIattn----~~~~L~~~L~r~ 729 (1010)
+.+|+||||+|+++........+. ....+.+.|+.+++.-.-. ........+++||++.- .+.++-|.|..
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~Dv---S~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDV---SREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCC---CccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 456999999999985432211111 1123445555555542210 11123345788887753 24556677776
Q ss_pred CcccccccCCCCcHHHHHHHHH----HHhh-------h--cccccChHHHHhHhhhc-------CCCChhhHHHHHHHHH
Q 001808 730 GRFDFHVQLPAPAASERKAILE----HEIQ-------R--RSLECSDEILLDVASKC-------DGYDAYDLEILVDRTV 789 (1010)
Q Consensus 730 gRf~~~i~l~~P~~~eR~~IL~----~~l~-------~--~~~~~~~~~l~~la~~t-------~g~s~~DL~~Lv~~A~ 789 (1010)
||+..+.+.+++.++...||. .+++ . ..+.++++.+..+|... ++.-+|-|..++++.+
T Consensus 325 -R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred -ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 999999999999999999983 2322 1 23457888888877764 3555677777777766
Q ss_pred HHHH
Q 001808 790 HAAV 793 (1010)
Q Consensus 790 ~~a~ 793 (1010)
....
T Consensus 404 ~d~~ 407 (443)
T PRK05201 404 EDIS 407 (443)
T ss_pred HHHh
Confidence 5544
No 180
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.10 E-value=5.3e-10 Score=130.63 Aligned_cols=197 Identities=17% Similarity=0.250 Sum_probs=138.8
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCccee-eeE-EEEecc
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV-AHI-VFVCCS 630 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~-~~~-~~i~~s 630 (1010)
|.++.|.+.....+.+.+..- .-..+.||+||-|+||||+||.+|+.+....... .++ .-..|.
T Consensus 15 F~evvGQe~v~~~L~nal~~~--------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENG--------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhC--------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 556777777766666655321 1125699999999999999999999997542110 000 001111
Q ss_pred c--------------ccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 001808 631 R--------------LSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE 696 (1010)
Q Consensus 631 ~--------------l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~ 696 (1010)
. ......++++..+..+..........|.+|||+|+|-. ...+.|+..+++
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~---------------~afNALLKTLEE 145 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK---------------QAFNALLKTLEE 145 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH---------------HHHHHHhccccc
Confidence 1 12234555666555554444445566999999999841 333334443433
Q ss_pred hccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 697 YGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 697 ~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
-. ..|.+|.+|+.++.+++.+++ |.. ++.|...+.++....|..++.+.++.++++.+..+++..+|
T Consensus 146 PP---------~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G- 212 (515)
T COG2812 146 PP---------SHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG- 212 (515)
T ss_pred Cc---------cCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-
Confidence 22 258999999999999999998 665 67899999999999999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHH
Q 001808 777 DAYDLEILVDRTVHA 791 (1010)
Q Consensus 777 s~~DL~~Lv~~A~~~ 791 (1010)
+.||...+++.+...
T Consensus 213 s~RDalslLDq~i~~ 227 (515)
T COG2812 213 SLRDALSLLDQAIAF 227 (515)
T ss_pred ChhhHHHHHHHHHHc
Confidence 788988888887644
No 181
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.1e-09 Score=130.50 Aligned_cols=191 Identities=20% Similarity=0.242 Sum_probs=123.0
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce------------
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------ 620 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~------------ 620 (1010)
+..+.|.+..++.+.+.+.. . ..+.++||+||+|+|||++|+++|+.+......
T Consensus 15 f~~liGq~~i~~~L~~~l~~----~----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 15 FDELVGQEAIATTLKNALIS----N----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred HhhccChHHHHHHHHHHHHc----C----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 55677777766666554432 1 113569999999999999999999998642110
Q ss_pred --------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001808 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1010)
Q Consensus 621 --------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1010)
...+++++.. .....+.++..+.............|+||||+|.|-. ...+.|+.
T Consensus 81 C~~i~~g~h~D~~ei~~~--~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------~a~naLLK 143 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAA--SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------AAFNALLK 143 (620)
T ss_pred HHHHhcCCCccEEEEecc--ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH---------------HHHHHHHH
Confidence 0012233322 1122334444333222111123346999999998831 23344555
Q ss_pred HHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh
Q 001808 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1010)
Q Consensus 693 ~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~ 772 (1010)
.+++... .+++|++++.++.+.+.+++ |.. .++|+.++.++....+..++.+.+..++++.+..++..
T Consensus 144 ~LEePp~---------~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~ 211 (620)
T PRK14948 144 TLEEPPP---------RVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQR 211 (620)
T ss_pred HHhcCCc---------CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5554332 36777777777788888888 665 68888999998888888888877888888999999998
Q ss_pred cCCCChhhHHHHHHH
Q 001808 773 CDGYDAYDLEILVDR 787 (1010)
Q Consensus 773 t~g~s~~DL~~Lv~~ 787 (1010)
+.| +.+++..++++
T Consensus 212 s~G-~lr~A~~lLek 225 (620)
T PRK14948 212 SQG-GLRDAESLLDQ 225 (620)
T ss_pred cCC-CHHHHHHHHHH
Confidence 887 44666555554
No 182
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.10 E-value=1.6e-09 Score=131.96 Aligned_cols=236 Identities=17% Similarity=0.202 Sum_probs=135.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc----eeeeEEEE
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVAHIVFV 627 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~----~~~~~~~i 627 (1010)
++..+.|.+..++.+.+.+. .+.+.+++|+||+||||||+|+++++....... ....++.+
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia---------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVA---------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cHHhceeCcHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 46677888888877655431 122457999999999999999999887632211 12568888
Q ss_pred ecccccCCchhhHH------------HHHHHHHHH----------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHH
Q 001808 628 CCSRLSLEKGPIIR------------QALSNFISE----------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1010)
Q Consensus 628 ~~s~l~~~~~~~~~------------~~l~~~f~~----------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1010)
+|..+.... ..+. +.....+.. .......+|||||++.|- ......
T Consensus 217 ~~~~l~~d~-~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~ 284 (615)
T TIGR02903 217 DGTTLRWDP-REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNK 284 (615)
T ss_pred echhccCCH-HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHH
Confidence 987763110 0000 000111110 001234699999998872 222234
Q ss_pred HHHHHHHHHH----h-hccccC----------CccCCCcEEEEEe-cCCccccChhhhcCCcccccccCCCCcHHHHHHH
Q 001808 686 LTKFLVDIMD----E-YGEKRK----------SSCGIGPIAFVAS-AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1010)
Q Consensus 686 l~~~L~~~ld----~-~~~~~~----------~~~~~~~v~vIat-tn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~I 749 (1010)
+...+.+..- . +..... .......+++|++ ++.+..++++|++ ||. .+.+++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 4443332100 0 000000 0001123556654 5567788999988 887 678999999999999
Q ss_pred HHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 750 LEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 750 L~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
++..+.+.+..++++.+..++..+. .++...+.+..++..+..+.... ........++.+|+.+++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~---~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEA---GKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHh---ccCCCCeeECHHHHHHHhCC
Confidence 9999887777788888888887654 33444444444432222121100 00112245788888887754
No 183
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=2.1e-09 Score=125.09 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=122.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.++++.|.+..++.+...+.. ...+..+||+||+|+|||++|+++|+.+......
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~--------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRM--------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred cHhhccChHHHHHHHHHHHHh--------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 456777877776655554421 1123559999999999999999999998642100
Q ss_pred ---------------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHH
Q 001808 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1010)
Q Consensus 621 ---------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1010)
...+..++.... ...+.++.....+-.........++||||+|.+-. .
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~--~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------~ 142 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN--NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------A 142 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc--CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH---------------H
Confidence 011222222111 11233333222221111122345999999998831 1
Q ss_pred HHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHH
Q 001808 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1010)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~ 765 (1010)
-.+.|+..++.... ...+|.+++....+.+.+.+ |.. .+++++++.++..+.++..++..+..++++.
T Consensus 143 ~~~~LLk~LEep~~---------~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~a 210 (397)
T PRK14955 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADA 210 (397)
T ss_pred HHHHHHHHHhcCCC---------CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 22334444443322 25666666667778888887 665 7899999999999999998888888899999
Q ss_pred HHhHhhhcCCCChhhHHHHHHHHH
Q 001808 766 LLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 766 l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
+..++..+.| +.+.+...++++.
T Consensus 211 l~~l~~~s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 211 LQLIGRKAQG-SMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999887 5566666666543
No 184
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.09 E-value=5e-10 Score=140.84 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=108.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc----------CCcEEEEe
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~----------g~~~i~v~ 910 (1010)
..++++.|.+.....+.+.+. .+...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 467888888876555555443 2335689999999999999999999876 35577888
Q ss_pred cchhhh--hhhcccHHHHHHHHHHHhc-CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeC
Q 001808 911 GPELLN--KYIGASEQAVRDIFSKATA-AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1010)
Q Consensus 911 ~~el~~--~~ig~se~~l~~lf~~A~~-~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatT 987 (1010)
...+.. +|.|+.+..++.+|+.+.. ..++||||||++.+.+.++.... . .+.|.|+..|. .+.+.+|+||
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--~-d~~n~Lkp~l~----~G~l~~IgaT 323 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--G-DAANLLKPALA----RGELRTIAAT 323 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc--c-cHHHHhhHHhh----CCCeEEEEec
Confidence 877663 6889999999999999864 46899999999999876543211 1 13455666664 5668888888
Q ss_pred CC------------CcCCcceEEEecCCCcc
Q 001808 988 RL------------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 988 n~------------r~gR~d~~l~~~~p~~~ 1006 (1010)
+. ..+||. .|+++.|+.+
T Consensus 324 T~~e~~~~~~~d~AL~rRf~-~i~v~eps~~ 353 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQ-VVKVEEPDEE 353 (852)
T ss_pred CHHHHhhhhhccHHHHHhCe-EEEeCCCCHH
Confidence 85 456895 7899998865
No 185
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.08 E-value=3.3e-09 Score=128.15 Aligned_cols=194 Identities=17% Similarity=0.229 Sum_probs=125.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL----------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~----------- 620 (1010)
.++++.|.+..++.+.+.+.. ..-+.++||+||+|+||||+|+.+|+.+......
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~--------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRM--------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 456777877777666554421 1123559999999999999999999998642110
Q ss_pred ---------------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHH
Q 001808 621 ---------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1010)
Q Consensus 621 ---------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1010)
...+..++... ....+.++..+..+..........|++|||+|.+-. .
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s--~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------~ 142 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAAS--NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------A 142 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH---------------H
Confidence 01222232211 112344444333332222223456999999998831 2
Q ss_pred HHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHH
Q 001808 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEI 765 (1010)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~ 765 (1010)
-.+.|+..++.... .+++|.+++....+.+.+.+ |.. .+++.+++.++....+...+...+..++++.
T Consensus 143 a~naLLK~LEePp~---------~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~ea 210 (620)
T PRK14954 143 AFNAFLKTLEEPPP---------HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADA 210 (620)
T ss_pred HHHHHHHHHhCCCC---------CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 23445555555432 25666666667788888887 554 7899999999999999988888888899999
Q ss_pred HHhHhhhcCCCChhhHHHHHHHHH
Q 001808 766 LLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 766 l~~la~~t~g~s~~DL~~Lv~~A~ 789 (1010)
++.++..+.| +.+++...+++.+
T Consensus 211 l~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 211 LQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHH
Confidence 9999998887 5555555555443
No 186
>PRK09087 hypothetical protein; Validated
Probab=99.08 E-value=8e-10 Score=118.40 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=111.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
..++|+||+|||||+|++++++..+ ..+++...+.... +.... ..+|+|||++.+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~~~~~~~-----------~~~~~---~~~l~iDDi~~~~-- 100 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPNEIGSDA-----------ANAAA---EGPVLIEDIDAGG-- 100 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHHHcchHH-----------HHhhh---cCeEEEECCCCCC--
Confidence 4499999999999999999998653 2245444322211 11111 1489999998752
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc---cChhhhcCCccc--ccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFD--FHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf~--~~i~l~~P~~~e 745 (1010)
. . ...+.+.+....+. + ..++++++..+.. ..+.+++ |+. ..+++.+|+.++
T Consensus 101 -~------~---~~~lf~l~n~~~~~----g-------~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 101 -F------D---ETGLFHLINSVRQA----G-------TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDAL 157 (226)
T ss_pred -C------C---HHHHHHHHHHHHhC----C-------CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHH
Confidence 0 0 12444444333322 1 2456666555443 3577888 763 678999999999
Q ss_pred HHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 746 RKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 746 R~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
|.+|++..+..+++.+++++++.++....+ +.+.+..++++....+... ...++...+.++++.
T Consensus 158 ~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~------------~~~it~~~~~~~l~~ 221 (226)
T PRK09087 158 LSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER------------KSRITRALAAEVLNE 221 (226)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHHh
Confidence 999999999998999999999999999886 4455555555544333221 133666666666554
No 187
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=3.6e-09 Score=128.78 Aligned_cols=193 Identities=17% Similarity=0.210 Sum_probs=125.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc--e---------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--L--------- 620 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~--~--------- 620 (1010)
.+++++|.+..++.+...+.. ...+..+||+||+|+|||++++.+|+.+..... .
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~--------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAE--------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHh--------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 466788888777766554422 112345899999999999999999999853211 0
Q ss_pred --------eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001808 621 --------VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1010)
Q Consensus 621 --------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1010)
...++.++... ....+.++..+..+..........|+||||+|.|-. ...+.|+.
T Consensus 80 c~~i~~~~~~d~~~i~~~~--~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~---------------~a~naLLk 142 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS--HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST---------------AAFNALLK 142 (585)
T ss_pred HHHHhcCCCCeEEEEeccc--cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH---------------HHHHHHHH
Confidence 01123333321 122333333332221111123456999999998831 22334555
Q ss_pred HHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh
Q 001808 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1010)
Q Consensus 693 ~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~ 772 (1010)
.++.... .+++|.+++..+.+.+.+.+ |.. .+.|+.++..+...++...+...++.++++.+..++..
T Consensus 143 ~LEepp~---------~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~ 210 (585)
T PRK14950 143 TLEEPPP---------HAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARA 210 (585)
T ss_pred HHhcCCC---------CeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 5554322 35666667777778788877 655 68899999999999999988888888999999999988
Q ss_pred cCCCChhhHHHHHHHH
Q 001808 773 CDGYDAYDLEILVDRT 788 (1010)
Q Consensus 773 t~g~s~~DL~~Lv~~A 788 (1010)
+.| +.+++.+.+++.
T Consensus 211 s~G-dlr~al~~LekL 225 (585)
T PRK14950 211 ATG-SMRDAENLLQQL 225 (585)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 887 777776666654
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.02 E-value=2.8e-09 Score=117.08 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc------ccC
Q 001808 561 TTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSL 634 (1010)
Q Consensus 561 ~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------l~~ 634 (1010)
..++++.+++...+.. +.++||+||||||||++|+++|+.++ ..+..++|.. +.+
T Consensus 5 ~~~~~l~~~~l~~l~~-------------g~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS-------------GYPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHHHHhc-------------CCeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHHhh
Confidence 3566666666554432 36799999999999999999999876 5677777754 222
Q ss_pred CchhhH-HHHHHH-------------------HHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH
Q 001808 635 EKGPII-RQALSN-------------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM 694 (1010)
Q Consensus 635 ~~~~~~-~~~l~~-------------------~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l 694 (1010)
.+.+.. ...+.. .+..|. ..+.+|+|||++.+- . .....|...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~-~~g~~lllDEi~r~~-----------~----~~q~~Ll~~L 129 (262)
T TIGR02640 66 SYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAV-REGFTLVYDEFTRSK-----------P----ETNNVLLSVF 129 (262)
T ss_pred hhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHH-HcCCEEEEcchhhCC-----------H----HHHHHHHHHh
Confidence 211100 111111 011111 245699999999863 1 3344455555
Q ss_pred Hhhcccc-------CCccCCCcEEEEEecCCcc-----ccChhhhcCCcccccccCCCCcHHHHHHHHHHHh
Q 001808 695 DEYGEKR-------KSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1010)
Q Consensus 695 d~~~~~~-------~~~~~~~~v~vIattn~~~-----~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l 754 (1010)
+...-.. .......++.+|+|+|+.. .+++++.+ ||. .+.++.|+.++-.+|++...
T Consensus 130 e~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 130 EEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLD--RLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHh--hcE-EEECCCCCHHHHHHHHHHhh
Confidence 4321000 0000113578999999753 46888888 885 78999999999999998754
No 189
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.02 E-value=8.4e-09 Score=130.81 Aligned_cols=218 Identities=19% Similarity=0.212 Sum_probs=141.5
Q ss_pred cccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc
Q 001808 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1010)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1010)
..+.|.+.+++.+.+.+....... . ....|.+.+||+||+|||||++|+++|+.+.... ..++.++|+.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl-----~-~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~---~~~i~~d~s~~~ 635 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL-----S-DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE---DAMVRIDMSEYM 635 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC-----C-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhhc
Confidence 467889999999998886542110 0 0012335699999999999999999999885332 467888887764
Q ss_pred CCchh-hH--------HH-HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--ccc
Q 001808 634 LEKGP-II--------RQ-ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1010)
Q Consensus 634 ~~~~~-~~--------~~-~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1010)
..... .+ .. .-..+.........+||||||++.+-+ .+...|.+.++.-. ...
T Consensus 636 ~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---------------~v~~~Ll~~l~~g~l~d~~ 700 (852)
T TIGR03346 636 EKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---------------DVFNVLLQVLDDGRLTDGQ 700 (852)
T ss_pred ccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---------------HHHHHHHHHHhcCceecCC
Confidence 32210 00 00 001112222334446999999988731 44555666665432 111
Q ss_pred CCccCCCcEEEEEecCCcc-------------------------ccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh
Q 001808 702 KSSCGIGPIAFVASAQSLE-------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1010)
Q Consensus 702 ~~~~~~~~v~vIattn~~~-------------------------~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~ 756 (1010)
.......+.++|+|+|... .+.|.|.. |++.++.+.+++.++..+|+...+..
T Consensus 701 g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~ 778 (852)
T TIGR03346 701 GRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGR 778 (852)
T ss_pred CeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHH
Confidence 1122334678899988621 13355555 89888999999999999998765542
Q ss_pred -------c--ccccChHHHHhHhhhcC--CCChhhHHHHHHHHHHHHHHhhc
Q 001808 757 -------R--SLECSDEILLDVASKCD--GYDAYDLEILVDRTVHAAVGRYL 797 (1010)
Q Consensus 757 -------~--~~~~~~~~l~~la~~t~--g~s~~DL~~Lv~~A~~~a~~r~~ 797 (1010)
. .+.+++++++.|+.... .+.++.|++++++.+...+.+..
T Consensus 779 l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 779 LRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred HHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2 25578889999988743 67889999999998877766644
No 190
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=7.6e-09 Score=125.75 Aligned_cols=193 Identities=19% Similarity=0.184 Sum_probs=129.0
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCc-------------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHK------------- 618 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~------------- 618 (1010)
.++++.|.+..++.+...+.. ...+..+|||||+|+|||++|+.+|+.+....
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~--------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIAT--------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHc--------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 466778888777777665532 11235599999999999999999999885221
Q ss_pred ------ceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHH
Q 001808 619 ------DLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVD 692 (1010)
Q Consensus 619 ------~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~ 692 (1010)
.....+..+++.. ......++..+..+-.........|++|||+|.+-. ...+.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~--~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~---------------~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS--NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ---------------AAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc--cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH---------------HHHHHHHH
Confidence 0012344444432 112333443333221111122345999999998831 23445666
Q ss_pred HHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhh
Q 001808 693 IMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASK 772 (1010)
Q Consensus 693 ~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~ 772 (1010)
.++.... ..++|.+++....+.+.+++ |.. .++|.+++.++....++..+.+.++.++++.+..++..
T Consensus 144 ~LEepp~---------~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 144 TLEEPPS---------YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred HHhCCCC---------CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 6665433 35666677677888888888 665 78999999999999999999888999999999999988
Q ss_pred cCCCChhhHHHHHHHH
Q 001808 773 CDGYDAYDLEILVDRT 788 (1010)
Q Consensus 773 t~g~s~~DL~~Lv~~A 788 (1010)
+.| +.+++..++++.
T Consensus 212 s~g-dlr~al~~Lekl 226 (614)
T PRK14971 212 ADG-GMRDALSIFDQV 226 (614)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 866 666666666554
No 191
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.02 E-value=7.7e-09 Score=112.46 Aligned_cols=132 Identities=18% Similarity=0.209 Sum_probs=92.5
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCC------------cccc
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKI 722 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~------------~~~L 722 (1010)
-|.||||||+|+|- -+.+.+|.+.++.-- .|++++ ++|+ |+.+
T Consensus 291 VpGVLFIDEvHmLD---------------IE~FsFlnrAlEse~---------aPIii~-AtNRG~~kiRGTd~~sPhGI 345 (450)
T COG1224 291 VPGVLFIDEVHMLD---------------IECFSFLNRALESEL---------APIIIL-ATNRGMTKIRGTDIESPHGI 345 (450)
T ss_pred ecceEEEechhhhh---------------HHHHHHHHHHhhccc---------CcEEEE-EcCCceeeecccCCcCCCCC
Confidence 47899999999872 255667777665422 245554 4443 5567
Q ss_pred ChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCc
Q 001808 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSS 802 (1010)
Q Consensus 723 ~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~ 802 (1010)
|..|+. |.- .+...+++.++..+|++..+....+.++++.++.++.....-+.+---+|+.-|...|..+
T Consensus 346 P~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------- 415 (450)
T COG1224 346 PLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------- 415 (450)
T ss_pred CHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh-------
Confidence 777776 654 6788899999999999999998899999999999998876655555555555554444443
Q ss_pred ccccccCcccccchhhhhhcccc
Q 001808 803 FEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 803 ~~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
+...+..+|++.|.+-|..
T Consensus 416 ----g~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 416 ----GSKRVEVEDVERAKELFLD 434 (450)
T ss_pred ----CCCeeehhHHHHHHHHHhh
Confidence 3345777888877665543
No 192
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=4.2e-09 Score=127.51 Aligned_cols=218 Identities=17% Similarity=0.229 Sum_probs=146.9
Q ss_pred cccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc
Q 001808 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1010)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1010)
..+.|.+.+++.+.+.++....-. .. .-.|-+.+||.||+|+|||.||++||..|.... ..++.+|.|.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL-----~d-p~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~ 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGL-----GD-PNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYM 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCC-----CC-CCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHH
Confidence 467889999999998886532100 00 022335699999999999999999999997433 567888887754
Q ss_pred C---------CchhhHHHHHHHHHHHHHhc-CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--ccc
Q 001808 634 L---------EKGPIIRQALSNFISEALDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1010)
Q Consensus 634 ~---------~~~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1010)
. ...|.+----...+.++-.. ..+||+|||+++--+ .+.+.|++.+|.-. ...
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp---------------dV~nilLQVlDdGrLTD~~ 626 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP---------------DVFNLLLQVLDDGRLTDGQ 626 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH---------------HHHHHHHHHhcCCeeecCC
Confidence 2 11111110011233344334 457999999988642 77888888888643 222
Q ss_pred CCccCCCcEEEEEecCCcc----------------------------ccChhhhcCCcccccccCCCCcHHHHHHHHHHH
Q 001808 702 KSSCGIGPIAFVASAQSLE----------------------------KIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (1010)
Q Consensus 702 ~~~~~~~~v~vIattn~~~----------------------------~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~ 753 (1010)
+......+.++|+|+|--. .+.|+|+. |++..|.|.+.+.+...+|+..+
T Consensus 627 Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 627 GRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred CCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHH
Confidence 2334456899999998410 13466666 99999999999999999998765
Q ss_pred hhh-------c--ccccChHHHHhHhhhc--CCCChhhHHHHHHHHHHHHHHhhc
Q 001808 754 IQR-------R--SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGRYL 797 (1010)
Q Consensus 754 l~~-------~--~~~~~~~~l~~la~~t--~g~s~~DL~~Lv~~A~~~a~~r~~ 797 (1010)
+.. + .+.++++....++..+ ..|.++-|+.++++-+...+...+
T Consensus 705 L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 705 LNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 542 2 3457888888888876 357778888888877666655543
No 193
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.01 E-value=1.5e-09 Score=123.39 Aligned_cols=139 Identities=23% Similarity=0.341 Sum_probs=95.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhc
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig 920 (1010)
..|+++.|.++.++.+...+..... .-.+..+++|+||||||||++|+++|+.++..+..++++.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 5789999999999998877753211 113356899999999999999999999999988877665432
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc----------------ccCcEEEE
Q 001808 921 ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFVF 984 (1010)
Q Consensus 921 ~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e----------------~~~~v~vi 984 (1010)
....+..++... ..++||||||||.+... +...|...|+... ...++.+|
T Consensus 89 -~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li 154 (328)
T PRK00080 89 -KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLI 154 (328)
T ss_pred -ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEE
Confidence 223455566553 35689999999998521 2233445554211 01235667
Q ss_pred EeCCC-------CcCCcceEEEecCCCcc
Q 001808 985 AATRL-------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 985 atTn~-------r~gR~d~~l~~~~p~~~ 1006 (1010)
++|++ ...||...+.+++++.+
T Consensus 155 ~at~~~~~l~~~L~sRf~~~~~l~~~~~~ 183 (328)
T PRK00080 155 GATTRAGLLTSPLRDRFGIVQRLEFYTVE 183 (328)
T ss_pred eecCCcccCCHHHHHhcCeeeecCCCCHH
Confidence 77776 23578888888877654
No 194
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.5e-09 Score=125.88 Aligned_cols=118 Identities=19% Similarity=0.284 Sum_probs=82.7
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..++++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.++..
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 67899999999999888877622 223458999999999999999999998652
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.+++.. ...-..+|++.+.+. .+...|+||||+|.+ +....|.||..|
T Consensus 83 ~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L-----------s~~A~NALLKtL 145 (484)
T PRK14956 83 EITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML-----------TDQSFNALLKTL 145 (484)
T ss_pred HHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc-----------CHHHHHHHHHHh
Confidence 33333211 111234566555443 345679999999998 356789999999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
+ +....+++|.+|+.
T Consensus 146 E--EPp~~viFILaTte 160 (484)
T PRK14956 146 E--EPPAHIVFILATTE 160 (484)
T ss_pred h--cCCCceEEEeecCC
Confidence 7 44456665555544
No 195
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.00 E-value=1.9e-09 Score=114.24 Aligned_cols=109 Identities=23% Similarity=0.400 Sum_probs=84.3
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYI 919 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~i 919 (1010)
+..+++..|++.+|+.+.-.+...... -....|+|||||||.||||||..+|.++|.++-..+++-+-.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 367889999999999998887743221 234569999999999999999999999999999888876532
Q ss_pred cccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCc
Q 001808 920 GASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV 975 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~ 975 (1010)
..++..++... ...+|||||||+.+.+. +-..|...|+.+
T Consensus 91 ---~gDlaaiLt~L--e~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf 130 (332)
T COG2255 91 ---PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEEVLYPAMEDF 130 (332)
T ss_pred ---hhhHHHHHhcC--CcCCeEEEehhhhcChh-----------HHHHhhhhhhhe
Confidence 34566676664 45589999999999643 555677888753
No 196
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.99 E-value=1.9e-09 Score=121.32 Aligned_cols=138 Identities=21% Similarity=0.320 Sum_probs=91.8
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcc
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGA 921 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~ 921 (1010)
.|+++.|++++++.+...+...... .....+++|+||||||||++|+++|..++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 5889999999999988877532111 123457999999999999999999999998877665543221
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc----------------ccCcEEEEE
Q 001808 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE----------------VLTGVFVFA 985 (1010)
Q Consensus 922 se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e----------------~~~~v~via 985 (1010)
...+...+... ..+.+|||||++.+.+. ....|+..|++.. ...++.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 12233344332 35679999999998532 2344555554221 112366777
Q ss_pred eCCC-------CcCCcceEEEecCCCcc
Q 001808 986 ATRL-------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 986 tTn~-------r~gR~d~~l~~~~p~~~ 1006 (1010)
+|++ ...||...+.+++++.+
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~ 162 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVE 162 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHH
Confidence 7776 33688888888877653
No 197
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=2.9e-08 Score=109.42 Aligned_cols=195 Identities=19% Similarity=0.270 Sum_probs=116.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc------------cc----CCchhhHHHHHHHHHH-HHHh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------------LS----LEKGPIIRQALSNFIS-EALD 653 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------------l~----~~~~~~~~~~l~~~f~-~a~~ 653 (1010)
+.++|+||+|+||||+++.+++.+...... ....+++.. +. +.........+...+. ....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~--~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVV--AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeE--EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 458999999999999999999987632211 111121110 10 0000111122333222 2334
Q ss_pred cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCC--cccc----Chhhh
Q 001808 654 HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKI----PQSLT 727 (1010)
Q Consensus 654 ~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~--~~~L----~~~L~ 727 (1010)
..+.+|+|||++.+-. .....+..+.+ ...... ..+.++.+... .+.+ ...+.
T Consensus 122 ~~~~vliiDe~~~l~~---------------~~~~~l~~l~~-~~~~~~-----~~~~vvl~g~~~~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 122 GKRALLVVDEAQNLTP---------------ELLEELRMLSN-FQTDNA-----KLLQIFLVGQPEFRETLQSPQLQQLR 180 (269)
T ss_pred CCCeEEEEECcccCCH---------------HHHHHHHHHhC-cccCCC-----CeEEEEEcCCHHHHHHHcCchhHHHH
Confidence 5677999999988731 11222222211 111100 12334444332 1111 12344
Q ss_pred cCCcccccccCCCCcHHHHHHHHHHHhhhcc----cccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcc
Q 001808 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRS----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (1010)
Q Consensus 728 r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~----~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (1010)
+ |+...+++++.+.++..+++...+...+ ..++++.++.+...+.|. ++.+..+++.+...+..+
T Consensus 181 ~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~-------- 249 (269)
T TIGR03015 181 Q--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE-------- 249 (269)
T ss_pred h--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc--------
Confidence 4 7777889999999999999998876543 357889999999999996 566999999988877654
Q ss_pred cccccCcccccchhhhhhc
Q 001808 804 EKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 804 ~~~~~~~lt~eDf~~Al~~ 822 (1010)
+...++.+++..++..
T Consensus 250 ---~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 250 ---EKREIGGEEVREVIAE 265 (269)
T ss_pred ---CCCCCCHHHHHHHHHH
Confidence 2245888888877765
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.98 E-value=3e-09 Score=132.45 Aligned_cols=138 Identities=23% Similarity=0.327 Sum_probs=100.1
Q ss_pred CCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh--------
Q 001808 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------- 915 (1010)
Q Consensus 844 ~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~-------- 915 (1010)
.+..|++.+|+.+.+.+...... .-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 45789999999998887633211 112345799999999999999999999999999888765432
Q ss_pred -hhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCc-------------cccCcE
Q 001808 916 -NKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-------------EVLTGV 981 (1010)
Q Consensus 916 -~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~-------------e~~~~v 981 (1010)
..|+|+....+.+.+..+....| |+||||+|++.+.... ...+.||..||.- ....++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 24777777777777777655455 8999999999754221 1356788888731 022689
Q ss_pred EEEEeCCC------CcCCcce
Q 001808 982 FVFAATRL------EFFHYNV 996 (1010)
Q Consensus 982 ~viatTn~------r~gR~d~ 996 (1010)
++|||+|. ..+|++-
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~i 487 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEV 487 (784)
T ss_pred EEEEcCCCCCCCHHHhcceee
Confidence 99999998 4456643
No 199
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.97 E-value=3.5e-08 Score=102.36 Aligned_cols=194 Identities=20% Similarity=0.246 Sum_probs=132.3
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+..|.|++.+.+.+.+....++. ..|..+|||+|.-|||||+|+||+..++..... ..+.|+-+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~-----------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl---rLVEV~k~ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE-----------GLPANNVLLWGARGTGKSSLVKALLNEYADEGL---RLVEVDKE 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc-----------CCcccceEEecCCCCChHHHHHHHHHHHHhcCC---eEEEEcHH
Confidence 4567889999999998888777654 344577999999999999999999999875442 36677766
Q ss_pred cccCCchhhHHHHHHHHHHHHHh-cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCc
Q 001808 631 RLSLEKGPIIRQALSNFISEALD-HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~-~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
++.. +-.++..... .+.-|||+||+- + .+++ .-...|...++.-.... ..+
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-F------e~gd-------~~yK~LKs~LeG~ve~r-----P~N 174 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLS-F------EEGD-------DAYKALKSALEGGVEGR-----PAN 174 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCC-C------CCCc-------hHHHHHHHHhcCCcccC-----CCe
Confidence 6543 2223333332 345699999982 1 2221 22344556666433222 247
Q ss_pred EEEEEecCCccccChhhhc--------------------CCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHh-
Q 001808 710 IAFVASAQSLEKIPQSLTS--------------------SGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLD- 768 (1010)
Q Consensus 710 v~vIattn~~~~L~~~L~r--------------------~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~- 768 (1010)
|++.||+|+.+.++..+.. +-||...+.|+++++++-.+|+.++++..++.++++.+..
T Consensus 175 Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~e 254 (287)
T COG2607 175 VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAE 254 (287)
T ss_pred EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999997765422211 2389999999999999999999999999999887765443
Q ss_pred ---HhhhcCCCChhhHHHHHH
Q 001808 769 ---VASKCDGYDAYDLEILVD 786 (1010)
Q Consensus 769 ---la~~t~g~s~~DL~~Lv~ 786 (1010)
.|....|-+++-....++
T Consensus 255 Al~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 255 ALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred HHHHHHhcCCCccHhHHHHHH
Confidence 333445566655544444
No 200
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.7e-09 Score=128.37 Aligned_cols=118 Identities=22% Similarity=0.346 Sum_probs=84.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..++++.|++.+++.|...+... +....+||+||+|||||++|+.+|+.+.+
T Consensus 13 qtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 57899999999999999888632 23346799999999999999999998864
Q ss_pred -------------cEEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHH
Q 001808 905 -------------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1010)
Q Consensus 905 -------------~~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~ 967 (1010)
+++.++... ...-..+|++.+.+. .+...|+||||+|.+ +....|.
T Consensus 81 C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L-----------s~~AaNA 143 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML-----------TNHAFNA 143 (700)
T ss_pred cHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc-----------CHHHHHH
Confidence 233333221 112345666666653 345689999999998 3567899
Q ss_pred HHHHhcCccccCc-EEEEEeCCC
Q 001808 968 FLTELDGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 968 lL~~ldg~e~~~~-v~viatTn~ 989 (1010)
||+.|+ |.... +||++||+.
T Consensus 144 LLKTLE--EPP~~v~FILaTtep 164 (700)
T PRK12323 144 MLKTLE--EPPEHVKFILATTDP 164 (700)
T ss_pred HHHhhc--cCCCCceEEEEeCCh
Confidence 999997 44444 455555544
No 201
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=3.1e-09 Score=122.51 Aligned_cols=145 Identities=19% Similarity=0.199 Sum_probs=99.8
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|++|+|++.+++.|...+..+..+... .+.+.+..+||+||+|+|||++|+++|+.+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARADVAA---AGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccccccc---cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 46999999999999999999876554332 233345679999999999999999999876332
Q ss_pred --------EEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhc
Q 001808 906 --------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1010)
Q Consensus 906 --------~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ld 973 (1010)
+..+.... ..+ .-..+|++++.+.. ++.+|+||||+|.+. ....|.||+.|+
T Consensus 79 ~~~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LE 142 (394)
T PRK07940 79 VLAGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVE 142 (394)
T ss_pred HhcCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhh
Confidence 11221110 011 12457888887754 345799999999983 446799999997
Q ss_pred CccccCcEEEEEeCCC------CcCCcceEEEecCCCcc
Q 001808 974 GVEVLTGVFVFAATRL------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 974 g~e~~~~v~viatTn~------r~gR~d~~l~~~~p~~~ 1006 (1010)
.. ..+.++|++||+. -..|. ..++|+.|+.+
T Consensus 143 ep-~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~ 179 (394)
T PRK07940 143 EP-PPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVE 179 (394)
T ss_pred cC-CCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHH
Confidence 32 2346677777776 12343 67888887654
No 202
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.96 E-value=3.5e-09 Score=111.92 Aligned_cols=141 Identities=23% Similarity=0.241 Sum_probs=106.3
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhh
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN 916 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~ 916 (1010)
...++++.|++..++.|.+..+.. .. -.+..++||+|+.|||||+++|++..++ |+++|++...++..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~F-------l~--G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~ 93 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQF-------LQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD 93 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH-------Hc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc
Confidence 478999999999999998776532 21 2356799999999999999999999987 78899998877654
Q ss_pred hhhcccHHHHHHHHHHHhcC-CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCc-c-ccCcEEEEEeCCC----
Q 001808 917 KYIGASEQAVRDIFSKATAA-APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGV-E-VLTGVFVFAATRL---- 989 (1010)
Q Consensus 917 ~~ig~se~~l~~lf~~A~~~-~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~-e-~~~~v~viatTn~---- 989 (1010)
+..+++..+.. .+=|||+|++. + +..+.-...|-..|||. + .-++|+|.||+||
T Consensus 94 ---------l~~l~~~l~~~~~kFIlf~DDLs--F--------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 94 ---------LPELLDLLRDRPYKFILFCDDLS--F--------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred ---------HHHHHHHHhcCCCCEEEEecCCC--C--------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 56667666543 33499999853 1 22344568899999984 3 3379999999999
Q ss_pred ------C--------------------cCCcceEEEecCCCccee
Q 001808 990 ------E--------------------FFHYNVLLFCSFIIFLIL 1008 (1010)
Q Consensus 990 ------r--------------------~gR~d~~l~~~~p~~~~~ 1008 (1010)
+ ..||-..|.|..|+.+-|
T Consensus 155 ~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~Y 199 (249)
T PF05673_consen 155 PESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEY 199 (249)
T ss_pred chhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHH
Confidence 2 237888888888876644
No 203
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.95 E-value=4.3e-09 Score=116.81 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=89.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc------ccCCchhhHH------HHHHHHHHHHHhcCCe
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKGPIIR------QALSNFISEALDHAPS 657 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------l~~~~~~~~~------~~l~~~f~~a~~~~Ps 657 (1010)
++++||.|+||||||++++.+|+.++ ..++.++|.. +.+...-.++ ......+..|. ..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~------~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLN------WPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHC------CCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCe
Confidence 47799999999999999999999998 5556666544 3332110000 00011122222 3567
Q ss_pred EEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh---hc-cccCCcc-CCCcEEEEEecCCcc------------
Q 001808 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE---YG-EKRKSSC-GIGPIAFVASAQSLE------------ 720 (1010)
Q Consensus 658 IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~---~~-~~~~~~~-~~~~v~vIattn~~~------------ 720 (1010)
+|++||+|..-+ .....|..+++. +. ....... ...++.+|||+|+.+
T Consensus 137 illlDEin~a~p---------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~ 201 (327)
T TIGR01650 137 ALCFDEYDAGRP---------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQ 201 (327)
T ss_pred EEEechhhccCH---------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeee
Confidence 899999988631 233344444442 10 1111112 223688999999854
Q ss_pred ccChhhhcCCcccccccCCCCcHHHHHHHHHHHh
Q 001808 721 KIPQSLTSSGRFDFHVQLPAPAASERKAILEHEI 754 (1010)
Q Consensus 721 ~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l 754 (1010)
.++++++. ||...+.+..|+.++-.+|+....
T Consensus 202 ~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 202 QINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred cCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 25788888 998778899999999899987654
No 204
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.95 E-value=9.2e-09 Score=101.03 Aligned_cols=114 Identities=32% Similarity=0.456 Sum_probs=77.5
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHHH---HHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQA---VRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~~---l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
...+++++||||||||++++.++..+ +.+++.++..+....+....... ....+..+....+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 34689999999999999999999998 88899998877665433222111 1222334445678899999999872
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCccc----cCcEEEEEeCCC---------CcCCcceEEEec
Q 001808 951 PKRGHDNTGVTDRVVNQFLTELDGVEV----LTGVFVFAATRL---------EFFHYNVLLFCS 1001 (1010)
Q Consensus 951 ~~R~~~~~~~~~rv~~~lL~~ldg~e~----~~~v~viatTn~---------r~gR~d~~l~~~ 1001 (1010)
......++..|..... ..++.+|++||. ...||+..+.++
T Consensus 98 -----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 98 -----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred -----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 2234556665654332 367888888885 335676655554
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.95 E-value=9.1e-09 Score=101.06 Aligned_cols=127 Identities=22% Similarity=0.389 Sum_probs=78.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHH---HHHHHHHHHhcCCeEEEEccchh
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQA---LSNFISEALDHAPSIVIFDNLDS 666 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~---l~~~f~~a~~~~PsIL~IDEiD~ 666 (1010)
+.+++|+||+|||||++++.+++.+.... ..+.++++.............. ............+.+|++||++.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPG---APFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 46799999999999999999999984211 5678888877654332221111 11222333445788999999988
Q ss_pred hhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcc--ccChhhhcCCcccccccCC
Q 001808 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE--KIPQSLTSSGRFDFHVQLP 739 (1010)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~--~L~~~L~r~gRf~~~i~l~ 739 (1010)
+.. .....+...+....... .....+.+|++++... .+++.+.+ ||+.++.++
T Consensus 96 ~~~---------------~~~~~~~~~i~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 96 LSR---------------GAQNALLRVLETLNDLR---IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hhH---------------HHHHHHHHHHHhcCcee---ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 721 11222333333332110 0012478888888766 56777777 887666665
No 206
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.94 E-value=1e-08 Score=116.09 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=121.7
Q ss_pred ccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCc
Q 001808 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 636 (1010)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~ 636 (1010)
+|....+.++.+.+..+.... .+|||+|++||||+++|+++....... ...++.++|..+....
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~-------------~pVLI~GE~GtGK~~lAr~iH~~s~r~---~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLD-------------RPVLIIGERGTGKELIAARLHYLSKRW---QGPLVKLNCAALSENL 65 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCChHHHHHHHHHHhcCcc---CCCeEEEeCCCCChHH
Confidence 467778888888887765433 679999999999999999998764322 2679999999865321
Q ss_pred hhh-HHHHHHHHHHH--------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--cccCCcc
Q 001808 637 GPI-IRQALSNFISE--------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKSSC 705 (1010)
Q Consensus 637 ~~~-~~~~l~~~f~~--------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~~~~ 705 (1010)
.+. +-......|.. ......++|||||++.|- . .+...|.+.++... ..+....
T Consensus 66 l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~-----------~----~~Q~~Ll~~l~~~~~~~~g~~~~ 130 (329)
T TIGR02974 66 LDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATAS-----------L----LVQEKLLRVIEYGEFERVGGSQT 130 (329)
T ss_pred HHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCC-----------H----HHHHHHHHHHHcCcEEecCCCce
Confidence 110 00000000000 111245799999999983 2 23333444443221 1011111
Q ss_pred CCCcEEEEEecCCc-------cccChhhhcCCccc-ccccCCCCc--HHHHHHHHHHHhhh----cc----cccChHHHH
Q 001808 706 GIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQR----RS----LECSDEILL 767 (1010)
Q Consensus 706 ~~~~v~vIattn~~-------~~L~~~L~r~gRf~-~~i~l~~P~--~~eR~~IL~~~l~~----~~----~~~~~~~l~ 767 (1010)
...++.+|++++.. ..+.+.|.. |+. ..|.+|+.. .++...++++++.. .+ ..++++.+.
T Consensus 131 ~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~ 208 (329)
T TIGR02974 131 LQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQARE 208 (329)
T ss_pred eccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHH
Confidence 12357888888752 123445554 553 346666665 24555566665543 12 357888899
Q ss_pred hHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 768 DVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 768 ~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
.|..+.--.+.++|++++++++..+
T Consensus 209 ~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhC
Confidence 8888875568899999998887543
No 207
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=4.3e-09 Score=126.34 Aligned_cols=118 Identities=20% Similarity=0.283 Sum_probs=83.7
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+++.|...+... +....+||+||+|||||++|+++|+.+++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 67999999999999998887632 23346799999999999999999998754
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++++++..+ ...-..++++.+.+.. +...|+||||+|.+ +....|.||+.|
T Consensus 81 ~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~L-----------T~~A~NALLKtL 143 (830)
T PRK07003 81 EIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHML-----------TNHAFNAMLKTL 143 (830)
T ss_pred HHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhC-----------CHHHHHHHHHHH
Confidence 233333321 1123456777766542 35679999999998 345789999999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
+ +....+.+|.+||.
T Consensus 144 E--EPP~~v~FILaTtd 158 (830)
T PRK07003 144 E--EPPPHVKFILATTD 158 (830)
T ss_pred H--hcCCCeEEEEEECC
Confidence 7 54455555444444
No 208
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.93 E-value=1.2e-08 Score=106.42 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=95.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCc---c---------------eeeeEEEEecccccCCchhhHHHHHHHHHHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHK---D---------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~---~---------------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a 651 (1010)
+..+||+||+|+|||++++.+++.+.... . ....+..+....- ....+.++..+..+....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCHHHHHHHHHHHccCc
Confidence 35699999999999999999999985320 0 0001122221110 112233333232221111
Q ss_pred HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCc
Q 001808 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1010)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gR 731 (1010)
......|++|||+|.+-. ...+.|+..++.... ...+|.+++....+.+++.+ |
T Consensus 93 ~~~~~kviiide~~~l~~---------------~~~~~Ll~~le~~~~---------~~~~il~~~~~~~l~~~i~s--r 146 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE---------------AAANALLKTLEEPPP---------NTLFILITPSPEKLLPTIRS--R 146 (188)
T ss_pred ccCCeEEEEEechhhhCH---------------HHHHHHHHHhcCCCC---------CeEEEEEECChHhChHHHHh--h
Confidence 223456999999999841 122335555554322 25666667777889999998 6
Q ss_pred ccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 732 FDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 732 f~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
.. .+++++|+.++..++++.. + ++++.+..++..+.|.
T Consensus 147 ~~-~~~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 147 CQ-VLPFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred cE-EeeCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 65 8999999999998888764 3 5677788888877763
No 209
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.92 E-value=2.3e-08 Score=108.61 Aligned_cols=185 Identities=19% Similarity=0.289 Sum_probs=110.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHh-----cCCeEEEEccch
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-----HAPSIVIFDNLD 665 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~-----~~PsIL~IDEiD 665 (1010)
..++|+||||||||+|||.++....... ..++.++...-. ..+ ++++|+.+.. ....||||||+|
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~---t~d----vR~ife~aq~~~~l~krkTilFiDEiH 232 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAK---TND----VRDIFEQAQNEKSLTKRKTILFIDEIH 232 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccc---hHH----HHHHHHHHHHHHhhhcceeEEEeHHhh
Confidence 3499999999999999999998765332 334444433322 222 4444544432 356799999999
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCC--ccccChhhhcCCcccccccCCCCcH
Q 001808 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS--LEKIPQSLTSSGRFDFHVQLPAPAA 743 (1010)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~--~~~L~~~L~r~gRf~~~i~l~~P~~ 743 (1010)
.+-. .++ ..|+-..+ .|.|.+|++|+. .-.++.+|.+ |.. ++.+.....
T Consensus 233 RFNk----sQQ-----------D~fLP~VE-----------~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~ 283 (554)
T KOG2028|consen 233 RFNK----SQQ-----------DTFLPHVE-----------NGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPV 283 (554)
T ss_pred hhhh----hhh-----------hcccceec-----------cCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCH
Confidence 9741 110 11222111 135888887653 3457888888 543 677888888
Q ss_pred HHHHHHHHHHhh---h--c---c-----cccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcccccccCc
Q 001808 744 SERKAILEHEIQ---R--R---S-----LECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPT 810 (1010)
Q Consensus 744 ~eR~~IL~~~l~---~--~---~-----~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~ 810 (1010)
+....||.+-+. + + + +.+++.+++.++..++|-..+.|.. ++.+......|.. +..+..
T Consensus 284 n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~-Lems~~m~~tr~g-------~~~~~~ 355 (554)
T KOG2028|consen 284 NAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNA-LEMSLSMFCTRSG-------QSSRVL 355 (554)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHH-HHHHHHHHHhhcC-------Ccccce
Confidence 888889887544 1 1 1 2356677999999999954443332 2222222222211 113345
Q ss_pred ccccchhhhhhc
Q 001808 811 LVRDDFSQAMHE 822 (1010)
Q Consensus 811 lt~eDf~~Al~~ 822 (1010)
++.+|+...+..
T Consensus 356 lSidDvke~lq~ 367 (554)
T KOG2028|consen 356 LSIDDVKEGLQR 367 (554)
T ss_pred ecHHHHHHHHhh
Confidence 777887776654
No 210
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=5.1e-09 Score=124.60 Aligned_cols=118 Identities=21% Similarity=0.353 Sum_probs=84.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.|...+... +....+||+||+|||||++|+++|+.+++
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 67999999999999998887621 33457899999999999999999999754
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+++.+++++- ..-..+|++...+. .++..|+||||+|.+ +....+.||..|
T Consensus 80 ~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L-----------S~~A~NALLKtL 142 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML-----------STHSFNALLKTL 142 (702)
T ss_pred HHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHH
Confidence 3444444321 12345677766553 245679999999998 345788999999
Q ss_pred cCccccCc-EEEEEeCCC
Q 001808 973 DGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~-v~viatTn~ 989 (1010)
+ +..+. .+|++||+.
T Consensus 143 E--EPP~~v~FILaTtd~ 158 (702)
T PRK14960 143 E--EPPEHVKFLFATTDP 158 (702)
T ss_pred h--cCCCCcEEEEEECCh
Confidence 7 33344 455555544
No 211
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.91 E-value=1.3e-08 Score=104.68 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=108.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCC---eEEEEccchhh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAP---SIVIFDNLDSI 667 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~P---sIL~IDEiD~L 667 (1010)
.+++|.||||+||||-+.++|++|--+ .....+..++.++-++ .+..+..++..-+.-..-.| .|+++||+|++
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~-~~ke~vLELNASdeRG--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGD-SYKEAVLELNASDERG--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhCh-hhhhHhhhccCccccc--cHHHHHHHHHHHHhhccCCCCceeEEEeeccchh
Confidence 359999999999999999999997321 1114567778777554 34556666654443322222 49999999998
Q ss_pred hcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHH
Q 001808 668 ISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERK 747 (1010)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~ 747 (1010)
.. .-.+.|.+.|+-|... ..+..+||..+.+-..+.+ |.. .+.+...+..+..
T Consensus 126 T~---------------gAQQAlRRtMEiyS~t---------tRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL 178 (333)
T KOG0991|consen 126 TA---------------GAQQALRRTMEIYSNT---------TRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQIL 178 (333)
T ss_pred hh---------------HHHHHHHHHHHHHccc---------chhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHH
Confidence 51 2234466666666543 5678888888888777777 544 4566666776666
Q ss_pred HHHHHHhhhcccccChHHHHhHhhhcCCCC
Q 001808 748 AILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1010)
Q Consensus 748 ~IL~~~l~~~~~~~~~~~l~~la~~t~g~s 777 (1010)
.-+....+..++..+++.++.+.-..+|-.
T Consensus 179 ~Rl~~v~k~Ekv~yt~dgLeaiifta~GDM 208 (333)
T KOG0991|consen 179 KRLLEVAKAEKVNYTDDGLEAIIFTAQGDM 208 (333)
T ss_pred HHHHHHHHHhCCCCCcchHHHhhhhccchH
Confidence 666666666778888888998888778743
No 212
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.89 E-value=1.1e-08 Score=119.86 Aligned_cols=129 Identities=22% Similarity=0.332 Sum_probs=88.5
Q ss_pred CCcCCCCchhhHHHH---HHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhh
Q 001808 841 SGWDDVGGLTDIQNA---IKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~---L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~ 917 (1010)
..++++.|++.+... +...+... ...+++|+||||||||++|+++|..++.+++.++....
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~-------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG-------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC-------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 467788888877444 66665421 13489999999999999999999999999999987532
Q ss_pred hhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC----
Q 001808 918 YIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL---- 989 (1010)
Q Consensus 918 ~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~---- 989 (1010)
....++.+++.+. .+...||||||+|.+. ....+.|+..|+. ..+++|++|..
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~att~n~~~ 133 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGATTENPSF 133 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeCCCChhh
Confidence 2345666776663 2356899999999873 3456778888852 34556655433
Q ss_pred -----CcCCcceEEEecCCCc
Q 001808 990 -----EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 990 -----r~gR~d~~l~~~~p~~ 1005 (1010)
...|+ ..+.+..++.
T Consensus 134 ~l~~aL~SR~-~~~~~~~ls~ 153 (413)
T PRK13342 134 EVNPALLSRA-QVFELKPLSE 153 (413)
T ss_pred hccHHHhccc-eeeEeCCCCH
Confidence 23444 4555555543
No 213
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=9.6e-09 Score=121.13 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=89.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..++++.|++.+.+.+...+... +.+..+||+||||||||++|+++|+.++.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~ 78 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACR 78 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHH
Confidence 67999999999998888876632 23456899999999999999999998754
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
.++.++++.- ..-..+|.+.+.+.. +...|+||||+|.+. ....+.||..|
T Consensus 79 ~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk~L 141 (472)
T PRK14962 79 SIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLKTL 141 (472)
T ss_pred HHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHHHH
Confidence 3555544321 112346666655542 245699999999883 44678899999
Q ss_pred cCccccCcEEEEEeCCC------CcCCcceEEEecCCCc
Q 001808 973 DGVEVLTGVFVFAATRL------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~------r~gR~d~~l~~~~p~~ 1005 (1010)
+... ..-++|++|||. ...|+ ..+.|..++.
T Consensus 142 E~p~-~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~ 178 (472)
T PRK14962 142 EEPP-SHVVFVLATTNLEKVPPTIISRC-QVIEFRNISD 178 (472)
T ss_pred HhCC-CcEEEEEEeCChHhhhHHHhcCc-EEEEECCccH
Confidence 7322 233445566654 22344 3566655543
No 214
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.87 E-value=4e-08 Score=115.48 Aligned_cols=172 Identities=19% Similarity=0.324 Sum_probs=117.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHH----hcCCeEEEEc
Q 001808 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL----DHAPSIVIFD 662 (1010)
Q Consensus 587 l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~----~~~PsIL~ID 662 (1010)
.|+.+-+||+||||-||||||+.+|+..+ ..++.+|+++-.. ...++.++..+.+.-. ..+|.+|++|
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeRt--~~~v~~kI~~avq~~s~l~adsrP~CLViD 394 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDERT--APMVKEKIENAVQNHSVLDADSRPVCLVID 394 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC------ceEEEeccccccc--HHHHHHHHHHHHhhccccccCCCcceEEEe
Confidence 45556799999999999999999999988 8899999998553 4455566666555422 2579999999
Q ss_pred cchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHh-----hccccCC-------ccCCCcEEEEEecCCccccChhhhcCC
Q 001808 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDE-----YGEKRKS-------SCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1010)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~-----~~~~~~~-------~~~~~~v~vIattn~~~~L~~~L~r~g 730 (1010)
|||.-. ......++.++.. ....... ..+.--.-+|+.||... -|+|+.-.
T Consensus 395 EIDGa~---------------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr 457 (877)
T KOG1969|consen 395 EIDGAP---------------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLR 457 (877)
T ss_pred cccCCc---------------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcc
Confidence 997632 1222333333221 1110000 00000134777888654 45665544
Q ss_pred cccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHH
Q 001808 731 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1010)
Q Consensus 731 Rf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1010)
-|...+.|.+|......+-|+.++.+.++.++...+..|+..|++ |++..+..
T Consensus 458 ~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINt 510 (877)
T KOG1969|consen 458 PFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINT 510 (877)
T ss_pred cceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHH
Confidence 677789999999999999999999988999999999999888877 66555443
No 215
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.87 E-value=2.5e-08 Score=113.05 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=123.8
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccc
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1010)
+.+++|.+..++++.+.+..+.... .+|||+|++||||+++|+++....... ..+++.++|..+
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~-------------~pVlI~GE~GtGK~~lA~~iH~~s~r~---~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLD-------------KPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCCcHHHHHHHHHHhCCcc---CCCeEEEeCCCC
Confidence 3467889999999999987765433 679999999999999999998653321 267999999987
Q ss_pred cCCchhhHHHHH---------------HHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001808 633 SLEKGPIIRQAL---------------SNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1010)
Q Consensus 633 ~~~~~~~~~~~l---------------~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1010)
.... +...+ ...+. ....+.|||||++.|- . .+...|.+.++.-
T Consensus 69 ~~~~---~~~~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~-----------~----~~Q~~L~~~l~~~ 127 (326)
T PRK11608 69 NENL---LDSELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAP-----------M----LVQEKLLRVIEYG 127 (326)
T ss_pred CHHH---HHHHHccccccccCCcccccCCchh---ccCCCeEEeCChhhCC-----------H----HHHHHHHHHHhcC
Confidence 5221 11111 01122 2345689999999983 1 2333344444331
Q ss_pred c--cccCCccCCCcEEEEEecCCc-------cccChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhhh----cc---
Q 001808 698 G--EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS--- 758 (1010)
Q Consensus 698 ~--~~~~~~~~~~~v~vIattn~~-------~~L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~~----~~--- 758 (1010)
. ..+.......++.+|++++.. ..+.+.|.. ||. ..|.+|+... ++...++++++.. .+
T Consensus 128 ~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~ 205 (326)
T PRK11608 128 ELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPL 205 (326)
T ss_pred cEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCC
Confidence 1 100000011247888887652 234455555 563 3456665543 3445556655432 22
Q ss_pred -cccChHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 759 -LECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 759 -~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
..++++.+..+..+.--.+.++|++++++++..
T Consensus 206 ~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 206 FPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 247888888888877666889999999988753
No 216
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.87 E-value=9.3e-09 Score=112.97 Aligned_cols=115 Identities=21% Similarity=0.263 Sum_probs=77.8
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecc------hhhhhhhcccHHHHH---------------------HHH
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP------ELLNKYIGASEQAVR---------------------DIF 930 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~------el~~~~ig~se~~l~---------------------~lf 930 (1010)
+.++||+||||||||++|+++|..+|.+++.+++. ++++.|.|.....+. .++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 56899999999999999999999999999998664 444444433222111 122
Q ss_pred HHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--------------ccCcEEEEEeCCC-------
Q 001808 931 SKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--------------VLTGVFVFAATRL------- 989 (1010)
Q Consensus 931 ~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--------------~~~~v~viatTn~------- 989 (1010)
. |.. .+.+|+|||++.+. ..+.+.|+..|+.-. ...+..||+|+|.
T Consensus 101 ~-A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 L-AVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred H-HHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 2 222 23599999999973 457788888886311 1135679999997
Q ss_pred -----CcCCcceEEEecCCCcc
Q 001808 990 -----EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 -----r~gR~d~~l~~~~p~~~ 1006 (1010)
.-.|| ..+++++|+.+
T Consensus 168 ~l~~aL~~R~-~~i~i~~P~~~ 188 (262)
T TIGR02640 168 ETQDALLDRL-ITIFMDYPDID 188 (262)
T ss_pred cccHHHHhhc-EEEECCCCCHH
Confidence 22355 45677777754
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.86 E-value=1.7e-08 Score=98.19 Aligned_cols=118 Identities=23% Similarity=0.293 Sum_probs=78.9
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCc---EEEEecchhhhh--------------hhcccHHHHHHHHHHHhcCCCeE
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNK--------------YIGASEQAVRDIFSKATAAAPCL 940 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~---~i~v~~~el~~~--------------~ig~se~~l~~lf~~A~~~~p~V 940 (1010)
+.+++|+||||||||++++.+|..+... ++.++....... .........+.++..|+...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999999765 888877654322 12334566788999998888899
Q ss_pred EEEeCCCccCCCCCCCCCcchHHHHHHH---HHHhcCccccCcEEEEEeCC--C------CcCCcceEEEecCC
Q 001808 941 LFFDEFDSIAPKRGHDNTGVTDRVVNQF---LTELDGVEVLTGVFVFAATR--L------EFFHYNVLLFCSFI 1003 (1010)
Q Consensus 941 LfiDEid~l~~~R~~~~~~~~~rv~~~l---L~~ldg~e~~~~v~viatTn--~------r~gR~d~~l~~~~p 1003 (1010)
+|+||++.+..... ...... ...........+..+|+++| . ...|++..+.+..+
T Consensus 82 iiiDei~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ--------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH--------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999999864311 000000 00111113345677888888 2 22278888877554
No 218
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.1e-08 Score=125.34 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=81.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcE--------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF-------------- 906 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~-------------- 906 (1010)
..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+++..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 67999999999999998877622 2234469999999999999999999986531
Q ss_pred ----------EEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 907 ----------ISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 907 ----------i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+.+++.+ ...-..+|++...+. .++..|+||||+|.+ +....|.||..|
T Consensus 81 ~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L-----------T~eAqNALLKtL 143 (944)
T PRK14949 81 EIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML-----------SRSSFNALLKTL 143 (944)
T ss_pred HHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc-----------CHHHHHHHHHHH
Confidence 1121110 011234566655543 345679999999998 456899999999
Q ss_pred cCccccCcE-EEEEeCCC
Q 001808 973 DGVEVLTGV-FVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v-~viatTn~ 989 (1010)
. +....+ ||++||+.
T Consensus 144 E--EPP~~vrFILaTTe~ 159 (944)
T PRK14949 144 E--EPPEHVKFLLATTDP 159 (944)
T ss_pred h--ccCCCeEEEEECCCc
Confidence 7 444444 55555554
No 219
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.82 E-value=2.8e-08 Score=112.90 Aligned_cols=212 Identities=17% Similarity=0.168 Sum_probs=127.1
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+..++|.+..++++++.++.+. +.+.+||++|++||||+.+|+++...-. +. ...+++.+||.
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~a-------------p~~~~vLi~GetGtGKel~A~~iH~~s~-r~-~~~PFI~~NCa 139 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYA-------------PSGLPVLIIGETGTGKELFARLIHALSA-RR-AEAPFIAFNCA 139 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhC-------------CCCCcEEEecCCCccHHHHHHHHHHhhh-cc-cCCCEEEEEHH
Confidence 446788999999999999987733 2347799999999999999999994433 21 34889999999
Q ss_pred cccCCchhh-HHHHHHHHHHHHHh--------cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--c
Q 001808 631 RLSLEKGPI-IRQALSNFISEALD--------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--E 699 (1010)
Q Consensus 631 ~l~~~~~~~-~~~~l~~~f~~a~~--------~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~ 699 (1010)
.+....... +-...+..|.-+.. ...++||+||++.+-+ .....|...++... .
T Consensus 140 ~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~---------------~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 140 AYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP---------------EGQEKLLRVLEEGEYRR 204 (403)
T ss_pred HhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH---------------hHHHHHHHHHHcCceEe
Confidence 987654321 11111122222222 2345999999998841 23333444444421 1
Q ss_pred ccCCccCCCcEEEEEecCC--ccccCh--hhhcCCcccccccCCCCcH--HHHHHHHHHHhh----hccccc---ChHHH
Q 001808 700 KRKSSCGIGPIAFVASAQS--LEKIPQ--SLTSSGRFDFHVQLPAPAA--SERKAILEHEIQ----RRSLEC---SDEIL 766 (1010)
Q Consensus 700 ~~~~~~~~~~v~vIattn~--~~~L~~--~L~r~gRf~~~i~l~~P~~--~eR~~IL~~~l~----~~~~~~---~~~~l 766 (1010)
-+.......+|.+|++|+. .+.+-. .|.++ ++...|++|+... +++..++++++. +.+..+ .++.+
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1111122346888888874 222222 33331 5555677776654 344455555554 333332 23455
Q ss_pred HhHhhhcCCCChhhHHHHHHHHHHHHH
Q 001808 767 LDVASKCDGYDAYDLEILVDRTVHAAV 793 (1010)
Q Consensus 767 ~~la~~t~g~s~~DL~~Lv~~A~~~a~ 793 (1010)
..+-...---+.++|++++++++..+.
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 555555433388999999999987664
No 220
>PRK04132 replication factor C small subunit; Provisional
Probab=98.81 E-value=3.9e-08 Score=121.72 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=122.3
Q ss_pred ceEEEEc--CCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhc--CCeEEEEccchh
Q 001808 591 GHILIHG--PPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDH--APSIVIFDNLDS 666 (1010)
Q Consensus 591 ~~VLL~G--ppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~--~PsIL~IDEiD~ 666 (1010)
-+-+..| |++.||||+|+++|+++... .....++.+|+++..+ .+.++..+.......... ...|+||||+|.
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rg--id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~ 641 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERG--INVIREKVKEFARTKPIGGASFKIIFLDEADA 641 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCccc--HHHHHHHHHHHHhcCCcCCCCCEEEEEECccc
Confidence 3577789 99999999999999998321 1226789999998543 345555555443322111 236999999999
Q ss_pred hhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHH
Q 001808 667 IISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASER 746 (1010)
Q Consensus 667 L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR 746 (1010)
+-. .-.+.|+..++.+.. .+.+|++||+++.+.+.+++ |.. .+.|++|+.++.
T Consensus 642 Lt~---------------~AQnALLk~lEep~~---------~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i 694 (846)
T PRK04132 642 LTQ---------------DAQQALRRTMEMFSS---------NVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDI 694 (846)
T ss_pred CCH---------------HHHHHHHHHhhCCCC---------CeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHH
Confidence 841 234556777776543 47899999999999999998 764 789999999999
Q ss_pred HHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHH
Q 001808 747 KAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1010)
Q Consensus 747 ~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~ 787 (1010)
...++..+.+.++.++++.+..++..+.| +.+...++++.
T Consensus 695 ~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~ 734 (846)
T PRK04132 695 AKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQA 734 (846)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 99999888877888899999999999988 34444444443
No 221
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.81 E-value=1.1e-08 Score=111.07 Aligned_cols=88 Identities=30% Similarity=0.531 Sum_probs=65.0
Q ss_pred eEEEeCCCCCChHHHHHHHHHHcCCc---EEEEecchhhhhhhcccHHHHHHHHHHHhc-----CCCeEEEEeCCCccCC
Q 001808 880 NVLLYGPPGCGKTHIVGAAAAACSLR---FISVKGPELLNKYIGASEQAVRDIFSKATA-----AAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 880 ~iLL~GppGtGKT~lAk~lA~~~g~~---~i~v~~~el~~~~ig~se~~l~~lf~~A~~-----~~p~VLfiDEid~l~~ 951 (1010)
.++|+||||||||+||+.+|.....+ |++++. .....+.+|.+|+.++. .+..||||||++.+..
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA-------t~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk 236 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA-------TNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK 236 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec-------cccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh
Confidence 79999999999999999999988654 777765 34556789999999865 3567999999999842
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 952 ~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
...+.||-.. |. +.+.+|+||-.
T Consensus 237 -----------sQQD~fLP~V---E~-G~I~lIGATTE 259 (554)
T KOG2028|consen 237 -----------SQQDTFLPHV---EN-GDITLIGATTE 259 (554)
T ss_pred -----------hhhhccccee---cc-CceEEEecccC
Confidence 2345566665 43 34555555543
No 222
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.81 E-value=4.5e-08 Score=118.62 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=125.6
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+..++|.+..+.++.+.+..+.... .+|||+|++||||+++|+++....... ...++.++|.
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~-------------~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~ 256 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSN-------------STVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCA 256 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcC-------------CCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecC
Confidence 345678899999999999887765433 679999999999999999999875422 2679999999
Q ss_pred cccCCchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHH
Q 001808 631 RLSLEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMD 695 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld 695 (1010)
.+..... +. .+|.. ......++|||||++.|- . .+...|.+.++
T Consensus 257 ~~~~~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~-----------~----~~Q~~Ll~~l~ 315 (534)
T TIGR01817 257 ALSETLL---ES---ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS-----------P----AFQAKLLRVLQ 315 (534)
T ss_pred CCCHHHH---HH---HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC-----------H----HHHHHHHHHHh
Confidence 8743211 11 11110 011245799999999983 2 23333444443
Q ss_pred hhc--cccCCccCCCcEEEEEecCCc-c------ccChhhhcCCccc-ccccCCCCc--HHHHHHHHHHHhhhc------
Q 001808 696 EYG--EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR------ 757 (1010)
Q Consensus 696 ~~~--~~~~~~~~~~~v~vIattn~~-~------~L~~~L~r~gRf~-~~i~l~~P~--~~eR~~IL~~~l~~~------ 757 (1010)
... ..+.......++.+|++++.. + .+.+.|.. |+. ..+.+|+.. .++...++++++...
T Consensus 316 ~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~ 393 (534)
T TIGR01817 316 EGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGR 393 (534)
T ss_pred cCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCC
Confidence 321 100000011247888887642 1 12233333 332 245666665 345556666665532
Q ss_pred ccccChHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 758 SLECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 758 ~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
...++++.+..+..+.--.+.++|++++++++..
T Consensus 394 ~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 394 PLTITPSAIRVLMSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred CCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2457888899988886555889999999988743
No 223
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.7e-08 Score=120.32 Aligned_cols=118 Identities=19% Similarity=0.309 Sum_probs=84.3
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 57999999999999998888622 233458999999999999999999988542
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.++... ...-..+|++.+.+. .++..|+||||+|.+. ....|.||..|
T Consensus 81 ~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHHHH
Confidence 44444332 122345677766553 2456799999999983 45789999999
Q ss_pred cCccccCc-EEEEEeCCC
Q 001808 973 DGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~-v~viatTn~ 989 (1010)
+ +.-+. ++|++||+.
T Consensus 144 E--epp~~~~fIlattd~ 159 (509)
T PRK14958 144 E--EPPSHVKFILATTDH 159 (509)
T ss_pred h--ccCCCeEEEEEECCh
Confidence 8 33334 455566554
No 224
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2.6e-08 Score=114.68 Aligned_cols=133 Identities=22% Similarity=0.304 Sum_probs=87.3
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+.+.+...+... +.+..+||+||+|||||++|+++|+.+...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 67999999999999998877521 223457999999999999999999987532
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.+++.. ...-..++++.+.+.. +...|+||||+|.+ +....+.||..|
T Consensus 81 ~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l-----------~~~a~naLLk~l 143 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML-----------SRHSFNALLKTL 143 (363)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc-----------CHHHHHHHHHHH
Confidence 22222211 1123456777766543 23569999999988 345678899999
Q ss_pred cCccccCcE-EEEEeCCC------CcCCcceEEEecCCCc
Q 001808 973 DGVEVLTGV-FVFAATRL------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 973 dg~e~~~~v-~viatTn~------r~gR~d~~l~~~~p~~ 1005 (1010)
+ +..+.+ +|++||+. ..+|+ ..+.|..++.
T Consensus 144 E--e~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~ 180 (363)
T PRK14961 144 E--EPPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISE 180 (363)
T ss_pred h--cCCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCH
Confidence 7 344455 44444443 12333 4455555543
No 225
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.80 E-value=7.4e-09 Score=107.44 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=69.5
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----c-------------
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL----R------------- 905 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~----~------------- 905 (1010)
+.+|.|++.+|..+.-... + +.|+||+||||||||++|+.++..+.- .
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999998865543 1 359999999999999999999988720 0
Q ss_pred -----------EEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcC
Q 001808 906 -----------FISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG 974 (1010)
Q Consensus 906 -----------~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg 974 (1010)
|.....+--....+|......-..+..|..+ |||+||+-.+ .+++++.|++-|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~G---VLflDE~~ef-----------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRG---VLFLDELNEF-----------DRSVLDALRQPLED 132 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTS---EEEECETTTS------------HHHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCC---EEEechhhhc-----------CHHHHHHHHHHHHC
Confidence 1000000000111221111011122334344 9999999766 67899999999963
Q ss_pred cc-----------ccCcEEEEEeCCC
Q 001808 975 VE-----------VLTGVFVFAATRL 989 (1010)
Q Consensus 975 ~e-----------~~~~v~viatTn~ 989 (1010)
-+ .--+.++|||+|.
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S
T ss_pred CeEEEEECCceEEEecccEEEEEecc
Confidence 11 1126789999998
No 226
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.80 E-value=5e-08 Score=113.05 Aligned_cols=141 Identities=13% Similarity=0.162 Sum_probs=75.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc-----cccCCc-hhhHHHHHHHHHHHHH---hcCCeEE
Q 001808 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-----RLSLEK-GPIIRQALSNFISEAL---DHAPSIV 659 (1010)
Q Consensus 589 ~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s-----~l~~~~-~~~~~~~l~~~f~~a~---~~~PsIL 659 (1010)
.++++||+||||||||++|++++..+.... .+.++.|. ++.|.. ..... -...|.... .....+|
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp~DLfG~l~i~~~~--~~g~f~r~~~G~L~~A~lL 111 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTPEEVFGPLSIQALK--DEGRYQRLTSGYLPEAEIV 111 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCcHHhcCcHHHhhhh--hcCchhhhcCCccccccEE
Confidence 357899999999999999999999875321 22222222 222211 00000 011111111 1123499
Q ss_pred EEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-cccCCccCCCcEEEEEecCCccc---cChhhhcCCccccc
Q 001808 660 IFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQSLEK---IPQSLTSSGRFDFH 735 (1010)
Q Consensus 660 ~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~v~vIattn~~~~---L~~~L~r~gRf~~~ 735 (1010)
|+||++.+- . .....|+..|.+.. ..+.........++++++|+... ..+++.. ||...
T Consensus 112 fLDEI~ras-----------p----~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFlir 174 (498)
T PRK13531 112 FLDEIWKAG-----------P----AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIR 174 (498)
T ss_pred eecccccCC-----------H----HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEE
Confidence 999997652 1 44455556664322 11111112223344555564221 2236776 89878
Q ss_pred ccCCCCc-HHHHHHHHHH
Q 001808 736 VQLPAPA-ASERKAILEH 752 (1010)
Q Consensus 736 i~l~~P~-~~eR~~IL~~ 752 (1010)
+.+|+|+ .++-.+|+..
T Consensus 175 i~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EECCCCCchHHHHHHHHc
Confidence 9999997 4565777764
No 227
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9.3e-08 Score=102.77 Aligned_cols=198 Identities=24% Similarity=0.304 Sum_probs=121.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc--CCchhhHHHHHHHHHHHHHh----cCCeEEEEccc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEALD----HAPSIVIFDNL 664 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~--~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEi 664 (1010)
.+|||.||.|||||.||+.+|+.|. .+|..-|+..|. +.-.++.+..+..+++.|.. .+..|++|||+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~Ln------VPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEI 171 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILN------VPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEI 171 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhC------CCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEech
Confidence 5699999999999999999999998 777888888886 44456788888888888754 36789999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc--------ccCC----ccCCCcEEEEEecCC--cc----------
Q 001808 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--------KRKS----SCGIGPIAFVASAQS--LE---------- 720 (1010)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~--------~~~~----~~~~~~v~vIattn~--~~---------- 720 (1010)
|.+..++..+.-.. .-.-+.+.+.|+.+++.-.. +... ..+..++++|+..-- .+
T Consensus 172 DKIarkSeN~SITR-DVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~ 250 (408)
T COG1219 172 DKIARKSENPSITR-DVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKK 250 (408)
T ss_pred hhhhccCCCCCccc-ccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCC
Confidence 99986443322110 01123555666666664321 1000 112235555543210 00
Q ss_pred -----------------------ccChhhhcC-------CcccccccCCCCcHHHHHHHHHH----H-------hh--hc
Q 001808 721 -----------------------KIPQSLTSS-------GRFDFHVQLPAPAASERKAILEH----E-------IQ--RR 757 (1010)
Q Consensus 721 -----------------------~L~~~L~r~-------gRf~~~i~l~~P~~~eR~~IL~~----~-------l~--~~ 757 (1010)
-.+..|..- ||++....+...+.+.+.+||.. + +. ..
T Consensus 251 ~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V 330 (408)
T COG1219 251 GIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGV 330 (408)
T ss_pred cccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCc
Confidence 011222221 37776668888888888888741 1 11 12
Q ss_pred ccccChHHHHhHhhhc--CCCChhhHHHHHHHHHHHHHHh
Q 001808 758 SLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 795 (1010)
Q Consensus 758 ~~~~~~~~l~~la~~t--~g~s~~DL~~Lv~~A~~~a~~r 795 (1010)
.+.++++.+..+|... .+--+|-|+.+++..+...+..
T Consensus 331 ~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 331 ELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFE 370 (408)
T ss_pred eEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhh
Confidence 3446777777777653 3334566777776665544433
No 228
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.79 E-value=3.5e-08 Score=111.60 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhc
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig 920 (1010)
..++++.|.+++++.+...+... +.+..+||+||+|+|||++|+++|+..+.+++.+++.+ .+ +.
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 57889999999999988887521 22345666999999999999999999999999998876 21 21
Q ss_pred ccHHHHHHHHHHHh-cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC-------CcC
Q 001808 921 ASEQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL-------EFF 992 (1010)
Q Consensus 921 ~se~~l~~lf~~A~-~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~-------r~g 992 (1010)
.....+........ ...++++||||+|.+.. ....+.|.+.|+. ...++.+|.|||. ...
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~--~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEA--YSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHh--cCCCceEEEEcCChhhchHHHHh
Confidence 11122222222111 13578999999998731 2234455556663 2345667777776 235
Q ss_pred CcceEEEecCCCc
Q 001808 993 HYNVLLFCSFIIF 1005 (1010)
Q Consensus 993 R~d~~l~~~~p~~ 1005 (1010)
|+. .+.|+.|+.
T Consensus 151 R~~-~i~~~~p~~ 162 (316)
T PHA02544 151 RCR-VIDFGVPTK 162 (316)
T ss_pred hce-EEEeCCCCH
Confidence 664 567766664
No 229
>PHA02244 ATPase-like protein
Probab=98.79 E-value=7.7e-08 Score=107.92 Aligned_cols=99 Identities=27% Similarity=0.337 Sum_probs=64.7
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecc----hhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP----ELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~----el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R 953 (1010)
+.++||+||||||||++|+++|..++.+|+.++.. ++.+ +++........-|-+|. ....++||||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p-- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIP-- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCH--
Confidence 56899999999999999999999999999998742 1111 11111111111222332 2456999999998843
Q ss_pred CCCCCcchHHHHHHHHHHhcC---------ccccCcEEEEEeCCC
Q 001808 954 GHDNTGVTDRVVNQFLTELDG---------VEVLTGVFVFAATRL 989 (1010)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ldg---------~e~~~~v~viatTn~ 989 (1010)
.+...|...++. +....++.+|||+|.
T Consensus 195 ---------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 195 ---------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred ---------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 345555555542 112357899999997
No 230
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.79 E-value=3.9e-08 Score=111.84 Aligned_cols=211 Identities=19% Similarity=0.232 Sum_probs=131.9
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
...+..++|...++.++.+.+.....++ ..|||.|++||||..+||+|.+.-... ...++.+||
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd-------------~tVLi~GETGtGKElvAraIH~~S~R~---~kPfV~~NC 282 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD-------------STVLIRGETGTGKELVARAIHQLSPRR---DKPFVKLNC 282 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC-------------CeEEEecCCCccHHHHHHHHHhhCccc---CCCceeeec
Confidence 3456688999999999999998877655 569999999999999999998865432 278999999
Q ss_pred ccccCCc-hhhHHHHHHHHHHHHHhc--------CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH-HHhhcc
Q 001808 630 SRLSLEK-GPIIRQALSNFISEALDH--------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI-MDEYGE 699 (1010)
Q Consensus 630 s~l~~~~-~~~~~~~l~~~f~~a~~~--------~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~-ld~~~~ 699 (1010)
..+...- ..++-...+..|.-|... ..+.||+|||..| +...+..+++.|.+. ++....
T Consensus 283 AAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~ 351 (550)
T COG3604 283 AALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGG 351 (550)
T ss_pred cccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccC-----------CHHHHHHHHHHHhhcceeecCC
Confidence 9887432 233334444455544432 3458999999665 223334555555432 222222
Q ss_pred ccCCccCCCcEEEEEecCCc-cc------cChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhhh----c---ccccC
Q 001808 700 KRKSSCGIGPIAFVASAQSL-EK------IPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----R---SLECS 762 (1010)
Q Consensus 700 ~~~~~~~~~~v~vIattn~~-~~------L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~~----~---~~~~~ 762 (1010)
.+. -..+|.+||+||+- +. +...|.- |.. ..+++||.-. ++.--+.++++++ . .+.++
T Consensus 352 ~r~---ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls 426 (550)
T COG3604 352 DRT---IKVDVRVIAATNRDLEEMVRDGEFRADLYY--RLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLS 426 (550)
T ss_pred Cce---eEEEEEEEeccchhHHHHHHcCcchhhhhh--cccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccC
Confidence 211 12369999999962 11 1111111 222 1234444422 1222223333332 2 34578
Q ss_pred hHHHHhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 763 DEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 763 ~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
.+.++.+..+.---+-++|++++++|+..+
T Consensus 427 ~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 427 AEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 888998888765558899999999998766
No 231
>PRK04195 replication factor C large subunit; Provisional
Probab=98.78 E-value=4e-08 Score=117.34 Aligned_cols=140 Identities=20% Similarity=0.265 Sum_probs=94.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhc
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIG 920 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig 920 (1010)
..++++.|.+.+++.+.+++....+ -++..++||+||||||||++|+++|+.++.+++.++.++....
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--- 78 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--- 78 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---
Confidence 5788999999999999888763211 1235789999999999999999999999999999998775321
Q ss_pred ccHHHHHHHHHHHhc------CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC----C
Q 001808 921 ASEQAVRDIFSKATA------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL----E 990 (1010)
Q Consensus 921 ~se~~l~~lf~~A~~------~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~----r 990 (1010)
..++.+...+.. ..+.||+|||+|.+..+ .....++.|+..|+ . .... ||+++|. .
T Consensus 79 ---~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~-------~d~~~~~aL~~~l~--~-~~~~-iIli~n~~~~~~ 144 (482)
T PRK04195 79 ---DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGN-------EDRGGARAILELIK--K-AKQP-IILTANDPYDPS 144 (482)
T ss_pred ---HHHHHHHHHhhccCcccCCCCeEEEEecCcccccc-------cchhHHHHHHHHHH--c-CCCC-EEEeccCccccc
Confidence 123333333221 25679999999998642 11234567777775 2 2233 3344444 1
Q ss_pred c---CCcceEEEecCCCcc
Q 001808 991 F---FHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 991 ~---gR~d~~l~~~~p~~~ 1006 (1010)
+ .+....+.|+.|+..
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~ 163 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTR 163 (482)
T ss_pred hhhHhccceEEEecCCCHH
Confidence 1 334567777777654
No 232
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.78 E-value=5e-08 Score=109.89 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=55.2
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCCccCCCcEEEEEecCCcc-ccChhhhcCC
Q 001808 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1010)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~v~vIattn~~~-~L~~~L~r~g 730 (1010)
..+||+||++.+- ..+...|.+.|+.-. ..+........+++++++|+.+ .+++++..
T Consensus 129 ~GiL~lDEInrl~---------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 129 RGYLYIDEVNLLE---------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCeEEecChHhCC---------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 3599999999873 144555666665422 1111111123588899988755 58888888
Q ss_pred cccccccCCCCcH-HHHHHHHHHH
Q 001808 731 RFDFHVQLPAPAA-SERKAILEHE 753 (1010)
Q Consensus 731 Rf~~~i~l~~P~~-~eR~~IL~~~ 753 (1010)
||...+.+++|.. ++|.+|++..
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHh
Confidence 9998899988876 8999998864
No 233
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.78 E-value=2.5e-08 Score=120.47 Aligned_cols=118 Identities=22% Similarity=0.359 Sum_probs=83.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+.+.|...+... +....+||+||+|||||++|+++|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 67999999999999998887632 223457999999999999999999998552
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.+++.. ...-..+|++.+.+. .+...|+||||+|.+ +....|.||+.|
T Consensus 81 ~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L-----------s~~a~NALLKtL 143 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML-----------SRHSFNALLKTL 143 (647)
T ss_pred HHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC-----------CHHHHHHHHHHH
Confidence 33333321 011234666665543 345679999999998 456899999999
Q ss_pred cCccccCcE-EEEEeCCC
Q 001808 973 DGVEVLTGV-FVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v-~viatTn~ 989 (1010)
+ |..+.+ ||++||+.
T Consensus 144 E--EPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 144 E--EPPEHVKFLLATTDP 159 (647)
T ss_pred H--cCCCCeEEEEecCCc
Confidence 7 544454 55555554
No 234
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.77 E-value=2.1e-07 Score=105.99 Aligned_cols=189 Identities=20% Similarity=0.235 Sum_probs=114.4
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc----eee-----
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD----LVA----- 622 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~----~~~----- 622 (1010)
.+..+.|.+...+.+...+.. ...+..+||+||+|+|||++|+.+|+.+..... ...
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~--------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE--------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc--------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 456778888877776665432 112356999999999999999999999854210 000
Q ss_pred ---------------eEEEEecc-ccc------CCchhhHHHHHHHHHHH-HHhcCCeEEEEccchhhhcCCCCCCCCCC
Q 001808 623 ---------------HIVFVCCS-RLS------LEKGPIIRQALSNFISE-ALDHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1010)
Q Consensus 623 ---------------~~~~i~~s-~l~------~~~~~~~~~~l~~~f~~-a~~~~PsIL~IDEiD~L~~~~~~~~~~~~ 679 (1010)
.+..+... +.. .-..+.++. +.+.+.. .......|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~-l~~~l~~~~~~g~~rVviIDeAd~l~----------- 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRR-VGHFLSQTSGDGNWRIVIIDPADDMN----------- 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHH-HHHHhhhccccCCceEEEEEchhhcC-----------
Confidence 01111110 000 111233443 2333332 223345699999999983
Q ss_pred chhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhccc
Q 001808 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1010)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~ 759 (1010)
. .-.+.|+..+++... ...+|..++.++.+.+.+++ |.. .+.+++|+.++..++++.......
T Consensus 155 ~----~aanaLLk~LEEpp~---------~~~fiLit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~- 217 (351)
T PRK09112 155 R----NAANAILKTLEEPPA---------RALFILISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQG- 217 (351)
T ss_pred H----HHHHHHHHHHhcCCC---------CceEEEEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccC-
Confidence 1 223335555555332 24555556777788888888 774 899999999999999987432222
Q ss_pred ccChHHHHhHhhhcCCCChhhHHHHH
Q 001808 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (1010)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv 785 (1010)
++++.+..++..+.| +++....++
T Consensus 218 -~~~~~~~~i~~~s~G-~pr~Al~ll 241 (351)
T PRK09112 218 -SDGEITEALLQRSKG-SVRKALLLL 241 (351)
T ss_pred -CCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 557777888887777 444444443
No 235
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.77 E-value=6.9e-08 Score=109.04 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=53.5
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCCccCCCcEEEEEecCCcc-ccChhhhcCC
Q 001808 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1010)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~v~vIattn~~~-~L~~~L~r~g 730 (1010)
..+|||||++.+- . .+...|.+.|+.-. ..+........++++++.|..+ .+++.+..
T Consensus 132 ~GvL~lDEi~~L~-----------~----~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld-- 194 (337)
T TIGR02030 132 RGILYIDEVNLLE-----------D----HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 194 (337)
T ss_pred CCEEEecChHhCC-----------H----HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--
Confidence 4699999999873 1 34444555554321 1110001112578888887655 58899999
Q ss_pred cccccccCCCCcH-HHHHHHHHHH
Q 001808 731 RFDFHVQLPAPAA-SERKAILEHE 753 (1010)
Q Consensus 731 Rf~~~i~l~~P~~-~eR~~IL~~~ 753 (1010)
||...+.++.|+. ++|.+|++..
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhh
Confidence 9998899998875 8888888763
No 236
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=2e-08 Score=120.73 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=83.1
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 67999999999999999887632 334578999999999999999999986432
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.++... +..-..+++++..+.. +...|+||||+|.+ +....+.||+.|
T Consensus 81 ~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L-----------s~~A~NALLKtL 143 (709)
T PRK08691 81 QIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML-----------SKSAFNAMLKTL 143 (709)
T ss_pred HHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc-----------CHHHHHHHHHHH
Confidence 22222211 1223467788776532 34579999999987 345788999999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
+ +..+.+.+|.+|+.
T Consensus 144 E--EPp~~v~fILaTtd 158 (709)
T PRK08691 144 E--EPPEHVKFILATTD 158 (709)
T ss_pred H--hCCCCcEEEEEeCC
Confidence 7 33344544444443
No 237
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.77 E-value=1.2e-07 Score=117.08 Aligned_cols=139 Identities=20% Similarity=0.236 Sum_probs=87.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc------ccCC-----chhhHHHHHHH-HHHHHHhcCCe
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLE-----KGPIIRQALSN-FISEALDHAPS 657 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------l~~~-----~~~~~~~~l~~-~f~~a~~~~Ps 657 (1010)
.+++||-|.||+|||+|+.++|+..+ ...+.++.++ +.|. ..|+.+ ..+ -|-. ......
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG------~kliRINLSeQTdL~DLfGsd~Pve~~Gef~--w~dapfL~-amr~G~ 1613 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTG------KKLIRINLSEQTDLCDLFGSDLPVEEGGEFR--WMDAPFLH-AMRDGG 1613 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhc------CceEEeeccccchHHHHhCCCCCcccCceeE--ecccHHHH-HhhcCC
Confidence 46799999999999999999999998 5566666554 2221 112211 111 1111 123456
Q ss_pred EEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc----ccC-CccCCCcEEEEEecCCcc------ccChhh
Q 001808 658 IVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE----KRK-SSCGIGPIAFVASAQSLE------KIPQSL 726 (1010)
Q Consensus 658 IL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~----~~~-~~~~~~~v~vIattn~~~------~L~~~L 726 (1010)
.+++||++..- +.+++-|...+|.... .-. ......+..++|+-|+.+ .+|..+
T Consensus 1614 WVlLDEiNLaS---------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF 1678 (4600)
T COG5271 1614 WVLLDEINLAS---------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSF 1678 (4600)
T ss_pred EEEeehhhhhH---------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHH
Confidence 89999995431 3666777777775432 111 112234677777777644 488888
Q ss_pred hcCCcccccccCCCCcHHHHHHHHHHHhh
Q 001808 727 TSSGRFDFHVQLPAPAASERKAILEHEIQ 755 (1010)
Q Consensus 727 ~r~gRf~~~i~l~~P~~~eR~~IL~~~l~ 755 (1010)
.. ||. ++.+...+.++...|..++..
T Consensus 1679 ~n--RFs-vV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1679 LN--RFS-VVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred hh--hhh-eEEecccccchHHHHHHhhCC
Confidence 88 998 677777777777777765543
No 238
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.76 E-value=5.5e-09 Score=114.93 Aligned_cols=153 Identities=24% Similarity=0.368 Sum_probs=86.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHH-------hcCCeEEEEc
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL-------DHAPSIVIFD 662 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~-------~~~PsIL~ID 662 (1010)
+.++||+||+|||||++++.+-+.+.... ..+..++++... ....+++.++..+.... ..+..|+|||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~---~~~~~~~~s~~T--ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDK---YLVITINFSAQT--TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCC---EEEEEEES-TTH--HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccc---cceeEeeccCCC--CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 47899999999999999999877654321 223445554422 11222222222111111 1133599999
Q ss_pred cchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcc---ccChhhhcCCcccccccCC
Q 001808 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDFHVQLP 739 (1010)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~---~L~~~L~r~gRf~~~i~l~ 739 (1010)
|++... .+..+.+.. .++++++.+.-..|..+...+....++.++|++++.. .++++|.| .|. .+.++
T Consensus 108 DlN~p~---~d~ygtq~~---iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~ 178 (272)
T PF12775_consen 108 DLNMPQ---PDKYGTQPP---IELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIP 178 (272)
T ss_dssp TTT-S------TTS--HH---HHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TEE-EEE--
T ss_pred ccCCCC---CCCCCCcCH---HHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--heE-EEEec
Confidence 998865 444444321 2444444443333333333455667899999988633 46777776 665 78999
Q ss_pred CCcHHHHHHHHHHHhhh
Q 001808 740 APAASERKAILEHEIQR 756 (1010)
Q Consensus 740 ~P~~~eR~~IL~~~l~~ 756 (1010)
.|+.+....|+..++..
T Consensus 179 ~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQS 195 (272)
T ss_dssp --TCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhh
Confidence 99999999999887764
No 239
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=3.5e-08 Score=115.94 Aligned_cols=118 Identities=19% Similarity=0.318 Sum_probs=85.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC-----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS----------------- 903 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g----------------- 903 (1010)
..++++.|++.+.+.|...+... +.+.++||+||+|+||||+|+++|+.+.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 67999999999999988776532 3356899999999999999999998642
Q ss_pred -------CcEEEEecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 904 -------LRFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 904 -------~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
.+++++++++- .+-..+|++.+.+... ...|++|||+|.+ +....|.||..|
T Consensus 78 ~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~L-----------s~~A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHML-----------SNSAFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhC-----------CHHHHHHHHHHH
Confidence 23455555421 1235677777776433 4569999999988 345789999999
Q ss_pred cCccccCc-EEEEEeCCC
Q 001808 973 DGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~-v~viatTn~ 989 (1010)
+. .... ++|++||+.
T Consensus 141 Ee--Pp~~v~fIlatte~ 156 (491)
T PRK14964 141 EE--PAPHVKFILATTEV 156 (491)
T ss_pred hC--CCCCeEEEEEeCCh
Confidence 83 3334 556666555
No 240
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=113.79 Aligned_cols=115 Identities=24% Similarity=0.370 Sum_probs=83.9
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhh--hhcccHHHH------------HHHHHHHhcCCCeEEE
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQAV------------RDIFSKATAAAPCLLF 942 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~--~ig~se~~l------------~~lf~~A~~~~p~VLf 942 (1010)
.++++||.||||||||++|+.+|..++.+|+.+.+...+.. .+|...... +-+|...+ +++|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 35799999999999999999999999999999988644322 122221111 11111111 4999
Q ss_pred EeCCCccCCCCCCCCCcchHHHHHHHHHHhcC----------ccccCcEEEEEeCCC------------CcCCcceEEEe
Q 001808 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG----------VEVLTGVFVFAATRL------------EFFHYNVLLFC 1000 (1010)
Q Consensus 943 iDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg----------~e~~~~v~viatTn~------------r~gR~d~~l~~ 1000 (1010)
+|||+... ..+.+.||..|+. ..-..+.+|+||+|. ..+||...+++
T Consensus 118 ~DEInra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v 186 (329)
T COG0714 118 LDEINRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYV 186 (329)
T ss_pred EeccccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEec
Confidence 99999884 4588999999985 223367899999994 66799899999
Q ss_pred cCCCcc
Q 001808 1001 SFIIFL 1006 (1010)
Q Consensus 1001 ~~p~~~ 1006 (1010)
++|+.+
T Consensus 187 ~yp~~~ 192 (329)
T COG0714 187 DYPDSE 192 (329)
T ss_pred CCCCch
Confidence 999543
No 241
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.74 E-value=6.2e-08 Score=119.64 Aligned_cols=135 Identities=16% Similarity=0.194 Sum_probs=84.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc------ccCCch----hhH---HHHHHHHHHHHHhcCC
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR------LSLEKG----PII---RQALSNFISEALDHAP 656 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~------l~~~~~----~~~---~~~l~~~f~~a~~~~P 656 (1010)
.-++||.||..||||+.+..+|++.+ ..++.++-.. +.|.++ |.+ ++.+-+.+.. .
T Consensus 888 ~fP~LiQGpTSSGKTSMI~yla~~tg------hkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~-----G 956 (4600)
T COG5271 888 NFPLLIQGPTSSGKTSMILYLARETG------HKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR-----G 956 (4600)
T ss_pred CCcEEEecCCCCCcchHHHHHHHHhC------ccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc-----C
Confidence 35699999999999999999999988 5566665433 323222 211 2233333333 3
Q ss_pred eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCCc-cCCCcEEEEEecCCcc------ccChh
Q 001808 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSS-CGIGPIAFVASAQSLE------KIPQS 725 (1010)
Q Consensus 657 sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~-~~~~~v~vIattn~~~------~L~~~ 725 (1010)
-.+++||++... ..+++.|.+++|.-. ...+.. ....+..++||-|+|. .+..+
T Consensus 957 yWIVLDELNLAp---------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrA 1021 (4600)
T COG5271 957 YWIVLDELNLAP---------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRA 1021 (4600)
T ss_pred cEEEeeccccCc---------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHH
Confidence 468999995432 255666666666432 222222 2234567777777654 35677
Q ss_pred hhcCCcccccccCCCCcHHHHHHHHHHH
Q 001808 726 LTSSGRFDFHVQLPAPAASERKAILEHE 753 (1010)
Q Consensus 726 L~r~gRf~~~i~l~~P~~~eR~~IL~~~ 753 (1010)
++. ||- .++|..-..++...||+..
T Consensus 1022 FRN--RFl-E~hFddipedEle~ILh~r 1046 (4600)
T COG5271 1022 FRN--RFL-EMHFDDIPEDELEEILHGR 1046 (4600)
T ss_pred HHh--hhH-hhhcccCcHHHHHHHHhcc
Confidence 777 886 6777777788888888743
No 242
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.74 E-value=1.2e-07 Score=107.07 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=54.3
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCCccCCCcEEEEEecCCcc-ccChhhhcCC
Q 001808 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1010)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~v~vIattn~~~-~L~~~L~r~g 730 (1010)
..+||+||++.+-+ .+...|.+.|+.-. ..+........+++|++.|..+ .+++.+..
T Consensus 145 ~GiL~lDEInrL~~---------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld-- 207 (350)
T CHL00081 145 RGILYVDEVNLLDD---------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD-- 207 (350)
T ss_pred CCEEEecChHhCCH---------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--
Confidence 46999999998831 33444555554311 1111111122578888888755 58899998
Q ss_pred cccccccCCCCc-HHHHHHHHHHH
Q 001808 731 RFDFHVQLPAPA-ASERKAILEHE 753 (1010)
Q Consensus 731 Rf~~~i~l~~P~-~~eR~~IL~~~ 753 (1010)
||...+.+..|+ .+.+.+|++..
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhh
Confidence 999999999997 58999999864
No 243
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.6e-07 Score=104.62 Aligned_cols=196 Identities=22% Similarity=0.306 Sum_probs=124.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc--CCchhhHHHHHHHHHHHHHh----cCCeEEEEccc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS--LEKGPIIRQALSNFISEALD----HAPSIVIFDNL 664 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~--~~~~~~~~~~l~~~f~~a~~----~~PsIL~IDEi 664 (1010)
.+|||.||+|+|||.|++.||+.+. .++...||..|. +.-.++++..|..++++|.. .+..|+||||+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ld------VPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEv 300 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLD------VPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEV 300 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhC------CCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehh
Confidence 5699999999999999999999998 788899999987 34456778888888887743 46789999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccC--------CccCCCcEEEEEecCC--cc----------
Q 001808 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRK--------SSCGIGPIAFVASAQS--LE---------- 720 (1010)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~--------~~~~~~~v~vIattn~--~~---------- 720 (1010)
|.+..+... -+....-.-+-+.+.|+.+++... .++. -..+..++++|+..-- .+
T Consensus 301 DKi~~~~~~-i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~ 379 (564)
T KOG0745|consen 301 DKITKKAES-IHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDK 379 (564)
T ss_pred hhhcccCcc-ccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcch
Confidence 999732111 111001111244445555554321 1111 0112235666654311 00
Q ss_pred --------------------c------------------------cChhhhcCCcccccccCCCCcHHHHHHHHH-----
Q 001808 721 --------------------K------------------------IPQSLTSSGRFDFHVQLPAPAASERKAILE----- 751 (1010)
Q Consensus 721 --------------------~------------------------L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~----- 751 (1010)
. +-|.|. |||+..+.+...+.+++..||.
T Consensus 380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchhh
Confidence 0 001222 5898888999999999988874
Q ss_pred ------HHhhh--cccccChHHHHhHhhhc--CCCChhhHHHHHHHHHHHHHHh
Q 001808 752 ------HEIQR--RSLECSDEILLDVASKC--DGYDAYDLEILVDRTVHAAVGR 795 (1010)
Q Consensus 752 ------~~l~~--~~~~~~~~~l~~la~~t--~g~s~~DL~~Lv~~A~~~a~~r 795 (1010)
.++.. ..+.++++.++.+|+.. .+--++-|+.++++++..+...
T Consensus 458 L~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 458 LGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 11221 23457888888887763 4445677888888888776544
No 244
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=4.9e-08 Score=115.64 Aligned_cols=119 Identities=24% Similarity=0.341 Sum_probs=83.9
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc--------------
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~-------------- 905 (1010)
+..|+++.|++.+.+.|...+... +.+.++||+||+|||||++|+++|+.++..
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 367999999999999888766521 334689999999999999999999988542
Q ss_pred --------------EEEEecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHH
Q 001808 906 --------------FISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1010)
Q Consensus 906 --------------~i~v~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~ 967 (1010)
++.+++. ...+...++.+++.+... ...|+||||+|.+. ....+.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~na 147 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFNA 147 (507)
T ss_pred ChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHHH
Confidence 2222211 112345688888877543 45699999999883 456889
Q ss_pred HHHHhcCccccCc-EEEEEeCCC
Q 001808 968 FLTELDGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 968 lL~~ldg~e~~~~-v~viatTn~ 989 (1010)
||..|+ +.... ++|++||+.
T Consensus 148 LLk~LE--epp~~~vfI~aTte~ 168 (507)
T PRK06645 148 LLKTLE--EPPPHIIFIFATTEV 168 (507)
T ss_pred HHHHHh--hcCCCEEEEEEeCCh
Confidence 999997 44445 444555544
No 245
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.73 E-value=1.6e-07 Score=117.19 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=122.7
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+..+.|.+..+..+.+.+..+.... .+|||+|++|||||++|+++....... ...++.++|.
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~-------------~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~~v~i~c~ 436 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSD-------------STVLILGETGTGKELIARAIHNLSGRN---NRRMVKMNCA 436 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCcCHHHHHHHHHHhcCCC---CCCeEEEecc
Confidence 446678899999999999887765432 679999999999999999998865322 2678999998
Q ss_pred cccCCchhh-------------HHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001808 631 RLSLEKGPI-------------IRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1010)
Q Consensus 631 ~l~~~~~~~-------------~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1010)
.+....... ..... ..+. ....++|||||++.+- . .+...|.+.++..
T Consensus 437 ~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le---~a~~GtL~Ldei~~L~-----------~----~~Q~~L~~~l~~~ 497 (686)
T PRK15429 437 AMPAGLLESDLFGHERGAFTGASAQRI-GRFE---LADKSSLFLDEVGDMP-----------L----ELQPKLLRVLQEQ 497 (686)
T ss_pred cCChhHhhhhhcCcccccccccccchh-hHHH---hcCCCeEEEechhhCC-----------H----HHHHHHHHHHHhC
Confidence 864321110 00111 1222 2345799999999883 2 3333344444332
Q ss_pred c--cccCCccCCCcEEEEEecCCcc-c------cChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhhh----cc--c
Q 001808 698 G--EKRKSSCGIGPIAFVASAQSLE-K------IPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS--L 759 (1010)
Q Consensus 698 ~--~~~~~~~~~~~v~vIattn~~~-~------L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~~----~~--~ 759 (1010)
. ..+.......++.+|++++..- . +...|.. |+. ..|.+|+... ++...++++++.+ .+ .
T Consensus 498 ~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~ 575 (686)
T PRK15429 498 EFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNI 575 (686)
T ss_pred CEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCC
Confidence 1 1000011123578888887531 1 2222222 222 2345554432 3334455555443 22 2
Q ss_pred -ccChHHHHhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 760 -ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 760 -~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
.++++.+..+..+.--.+.++|++++++++..+
T Consensus 576 ~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 576 DSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred CCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 378888888888766668899999999987543
No 246
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.73 E-value=3e-08 Score=98.01 Aligned_cols=117 Identities=21% Similarity=0.363 Sum_probs=69.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC------chhh-HHHHH-HHHHHHHHhcCCeEEEEcc
Q 001808 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------KGPI-IRQAL-SNFISEALDHAPSIVIFDN 663 (1010)
Q Consensus 592 ~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~------~~~~-~~~~l-~~~f~~a~~~~PsIL~IDE 663 (1010)
+|+|+||||||||++++.+|+.++ ..+..+.|+..... +.-. ....+ ...+..+ ...+.+++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-MRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-HHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeeccccccccccccccc-ccceeEEEECC
Confidence 589999999999999999999996 66777777653221 1000 00000 0000000 12567999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc---cCCccCCC-------cEEEEEecCCcc----ccChhhhcC
Q 001808 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK---RKSSCGIG-------PIAFVASAQSLE----KIPQSLTSS 729 (1010)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~---~~~~~~~~-------~v~vIattn~~~----~L~~~L~r~ 729 (1010)
++..- ..+...|...++..... ........ ++.+|+|+|+.+ .++++|.+
T Consensus 74 in~a~---------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~- 137 (139)
T PF07728_consen 74 INRAP---------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD- 137 (139)
T ss_dssp CGG-----------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT-
T ss_pred cccCC---------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh-
Confidence 98762 25566666666643211 01111111 389999999988 78999998
Q ss_pred Ccc
Q 001808 730 GRF 732 (1010)
Q Consensus 730 gRf 732 (1010)
||
T Consensus 138 -Rf 139 (139)
T PF07728_consen 138 -RF 139 (139)
T ss_dssp -T-
T ss_pred -hC
Confidence 76
No 247
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=6.2e-08 Score=116.48 Aligned_cols=118 Identities=19% Similarity=0.337 Sum_probs=80.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+..
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 77 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCV 77 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHH
Confidence 57999999999999999887632 22334799999999999999999988752
Q ss_pred ----------cEEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHH
Q 001808 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1010)
Q Consensus 905 ----------~~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~ 970 (1010)
+++.++++.. ..-..+|++-+.+. .....|+||||+|.+ +....|.||.
T Consensus 78 ~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L-----------t~~A~NALLK 140 (584)
T PRK14952 78 ALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV-----------TTAGFNALLK 140 (584)
T ss_pred HhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcC-----------CHHHHHHHHH
Confidence 1333332211 01234555544442 235579999999998 3457899999
Q ss_pred HhcCccccCcEE-EEEeCCC
Q 001808 971 ELDGVEVLTGVF-VFAATRL 989 (1010)
Q Consensus 971 ~ldg~e~~~~v~-viatTn~ 989 (1010)
.|+ +..+.++ |++||+.
T Consensus 141 ~LE--Epp~~~~fIL~tte~ 158 (584)
T PRK14952 141 IVE--EPPEHLIFIFATTEP 158 (584)
T ss_pred HHh--cCCCCeEEEEEeCCh
Confidence 997 4444544 4455443
No 248
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.72 E-value=3.8e-08 Score=105.60 Aligned_cols=124 Identities=20% Similarity=0.319 Sum_probs=83.9
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC------cEEEEecchh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL------RFISVKGPEL 914 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~------~~i~v~~~el 914 (1010)
..++++.|++.+.+.|...+.. +-..++|||||||||||+.|+++|+++.. .+...+.++.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 5788999999999999988762 33458999999999999999999999854 2445566665
Q ss_pred hhhhhcccH-HHHHHHHHHH--hcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeC
Q 001808 915 LNKYIGASE-QAVRDIFSKA--TAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1010)
Q Consensus 915 ~~~~ig~se-~~l~~lf~~A--~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatT 987 (1010)
.+..++... ++...+...- ... ++.|++|||.|++ +...-+.|..-|+. ....-+||+.++
T Consensus 100 rGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm-----------tsdaq~aLrr~mE~-~s~~trFiLIcn 167 (346)
T KOG0989|consen 100 RGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM-----------TSDAQAALRRTMED-FSRTTRFILICN 167 (346)
T ss_pred ccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh-----------hHHHHHHHHHHHhc-cccceEEEEEcC
Confidence 554333211 1111111111 111 2369999999998 45678899999985 234455555555
Q ss_pred CC
Q 001808 988 RL 989 (1010)
Q Consensus 988 n~ 989 (1010)
..
T Consensus 168 yl 169 (346)
T KOG0989|consen 168 YL 169 (346)
T ss_pred Ch
Confidence 54
No 249
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.71 E-value=1.5e-08 Score=103.46 Aligned_cols=115 Identities=23% Similarity=0.333 Sum_probs=82.0
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh-----hhcccH-------HHHHHHHHHHhcCCCeEEE
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASE-------QAVRDIFSKATAAAPCLLF 942 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~-----~ig~se-------~~l~~lf~~A~~~~p~VLf 942 (1010)
..++|++|++||||+.+|+++.... +.+|+.++++.+-.. ..|... ..-..+|..|..+ +||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~ 98 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLF 98 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEE
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEe
Confidence 3689999999999999999999987 468999999765322 222211 1123788888777 999
Q ss_pred EeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--c-------cCcEEEEEeCCC------CcCCcceEEEecCCCcc
Q 001808 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATRL------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 943 iDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~-------~~~v~viatTn~------r~gR~d~~l~~~~p~~~ 1006 (1010)
||||+.+. ..+...|+..|+.-. . .-.+-||+||+. .-|+|...+|+.+-.+.
T Consensus 99 Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 99 LDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp EETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTEE
T ss_pred ecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceEe
Confidence 99999994 557888888887311 1 126899999998 67899988888766544
No 250
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.71 E-value=1.2e-07 Score=92.15 Aligned_cols=76 Identities=30% Similarity=0.420 Sum_probs=56.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCch--------------hhHHHHHHHHHHHHHhcC
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG--------------PIIRQALSNFISEALDHA 655 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~--------------~~~~~~l~~~f~~a~~~~ 655 (1010)
+.+++|+||||||||++++.+|..+.... ..+++++++....... ......+...+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 46799999999999999999999987432 2477787776543211 122344556777777667
Q ss_pred CeEEEEccchhhh
Q 001808 656 PSIVIFDNLDSII 668 (1010)
Q Consensus 656 PsIL~IDEiD~L~ 668 (1010)
+.++++||++.+.
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 8999999999885
No 251
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.71 E-value=2.1e-07 Score=112.07 Aligned_cols=207 Identities=14% Similarity=0.169 Sum_probs=122.4
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..|+++.|.+..+.++++.+..+.... .+|||+|++||||+++|+++....... ...++.++|.
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~-------------~pvlI~GE~GtGK~~lA~aiH~~s~r~---~~pfv~inca 264 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLD-------------APLLITGDTGTGKDLLAYACHLRSPRG---KKPFLALNCA 264 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeccc
Confidence 456788899999999999887655432 569999999999999999987654321 2578899999
Q ss_pred cccCCchhhH-----H-------HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001808 631 RLSLEKGPII-----R-------QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1010)
Q Consensus 631 ~l~~~~~~~~-----~-------~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1010)
.+.....+.. . +.-..+|.. ...+.|||||++.+- ......++++|.+.. +.
T Consensus 265 ~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~---a~~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~--~~ 328 (520)
T PRK10820 265 SIPDDVVESELFGHAPGAYPNALEGKKGFFEQ---ANGGSVLLDEIGEMS-----------PRMQAKLLRFLNDGT--FR 328 (520)
T ss_pred cCCHHHHHHHhcCCCCCCcCCcccCCCChhhh---cCCCEEEEeChhhCC-----------HHHHHHHHHHHhcCC--cc
Confidence 8763211100 0 000011222 235689999999983 222334444433210 11
Q ss_pred cccCCccCCCcEEEEEecCCc-c------ccChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhh----hcc---ccc
Q 001808 699 EKRKSSCGIGPIAFVASAQSL-E------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQ----RRS---LEC 761 (1010)
Q Consensus 699 ~~~~~~~~~~~v~vIattn~~-~------~L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~----~~~---~~~ 761 (1010)
..+.......++.+|++++.. . .+.+.|.. |+. ..+.+|+... +++..++++++. +.+ ..+
T Consensus 329 ~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~l 406 (520)
T PRK10820 329 RVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKL 406 (520)
T ss_pred cCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 111101112257788877642 1 23344444 443 3456666543 344444455443 232 357
Q ss_pred ChHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 762 SDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 762 ~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
+++.+..|..+.--.+.++|++++.+|+..
T Consensus 407 s~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 407 AADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 888888888875555888999998888754
No 252
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.71 E-value=9.2e-08 Score=110.33 Aligned_cols=209 Identities=14% Similarity=0.137 Sum_probs=124.4
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~ 629 (1010)
..+++++.|....+.++++.+......+ ..|||.|++||||..+|+++.+.-... ..+|+.+||
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~td-------------stVLi~GESGTGKElfA~~IH~~S~R~---~~PFIaiNC 304 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTD-------------STVLILGESGTGKELFARAIHNLSPRA---NGPFIAINC 304 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCC-------------CcEEEecCCCccHHHHHHHHHhcCccc---CCCeEEEec
Confidence 4668899999999999999887766544 569999999999999999998864422 268999999
Q ss_pred ccccCCch-hhHHHHHHHHHHHHHhc---------CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc
Q 001808 630 SRLSLEKG-PIIRQALSNFISEALDH---------APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (1010)
Q Consensus 630 s~l~~~~~-~~~~~~l~~~f~~a~~~---------~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (1010)
..+...-. .++-..-...|.-|... ..+.||||||..+- ...+..+++.|.+- ++..
T Consensus 305 aAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp-----------l~LQaKLLRVLQEk--ei~r 371 (560)
T COG3829 305 AAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP-----------LPLQAKLLRVLQEK--EIER 371 (560)
T ss_pred ccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC-----------HHHHHHHHHHHhhc--eEEe
Confidence 88653221 11111112223333221 23589999997762 22333444444321 1111
Q ss_pred ccCCccCCCcEEEEEecCCc-c-cc-----ChhhhcCCcccccccCCCCcHH----HHHHHHHHHhhh----cc---ccc
Q 001808 700 KRKSSCGIGPIAFVASAQSL-E-KI-----PQSLTSSGRFDFHVQLPAPAAS----ERKAILEHEIQR----RS---LEC 761 (1010)
Q Consensus 700 ~~~~~~~~~~v~vIattn~~-~-~L-----~~~L~r~gRf~~~i~l~~P~~~----eR~~IL~~~l~~----~~---~~~ 761 (1010)
-+.......+|.+||+||.. . .+ ...|-- |.. ++.+..|... +...+..+++.+ .+ ..+
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~l 448 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGL 448 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccC
Confidence 11111223379999999962 1 11 122211 222 3334444333 333444455443 22 227
Q ss_pred ChHHHHhHhhhcCCCChhhHHHHHHHHHH
Q 001808 762 SDEILLDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 762 ~~~~l~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
+++.+..+.++.---+-++|++++++++.
T Consensus 449 s~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 449 SPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred CHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 78888888777655588999999999874
No 253
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=4.1e-07 Score=104.15 Aligned_cols=183 Identities=18% Similarity=0.186 Sum_probs=110.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc--ee--------
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LV-------- 621 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~--~~-------- 621 (1010)
.+.+++|.+..++.+.+.+.. ...+..+||+||+|+||+++|.++|+.+-.... ..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~--------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRS--------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred chhhccChHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 456788888777777665432 122356999999999999999999998842210 00
Q ss_pred ------------------eeEEEEecc--ccc-----CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCC
Q 001808 622 ------------------AHIVFVCCS--RLS-----LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEG 676 (1010)
Q Consensus 622 ------------------~~~~~i~~s--~l~-----~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~ 676 (1010)
..+.++... +-. .-..+.++.....+-.......+.|++|||+|.+-
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 011222110 100 01123333322222222233567899999999873
Q ss_pred CCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhh
Q 001808 677 SQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQR 756 (1010)
Q Consensus 677 ~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~ 756 (1010)
. .-.+.|+..+++... ..++|.+++.++.+.+.+++ |.. .+.+++|+.++..+++....
T Consensus 155 ---~----~aanaLLK~LEepp~---------~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~-- 213 (365)
T PRK07471 155 ---A----NAANALLKVLEEPPA---------RSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAG-- 213 (365)
T ss_pred ---H----HHHHHHHHHHhcCCC---------CeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhc--
Confidence 1 333445555555332 36677788888888888887 665 78999999999988887642
Q ss_pred cccccChHHHHhHhhhcCCCChhh
Q 001808 757 RSLECSDEILLDVASKCDGYDAYD 780 (1010)
Q Consensus 757 ~~~~~~~~~l~~la~~t~g~s~~D 780 (1010)
....+..+..++..+.| ++..
T Consensus 214 --~~~~~~~~~~l~~~s~G-sp~~ 234 (365)
T PRK07471 214 --PDLPDDPRAALAALAEG-SVGR 234 (365)
T ss_pred --ccCCHHHHHHHHHHcCC-CHHH
Confidence 22334444567777766 4433
No 254
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.70 E-value=8.9e-08 Score=106.32 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=59.5
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCC------------cccc
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS------------LEKI 722 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~------------~~~L 722 (1010)
-|.||||||+|+|- -+...+|.+.++.-- .|++++ +||+ ++.+
T Consensus 278 vpGVLFIDEvHmLD---------------iEcFsfLnralEs~~---------sPiiIl-ATNRg~~~irGt~~~sphGi 332 (398)
T PF06068_consen 278 VPGVLFIDEVHMLD---------------IECFSFLNRALESEL---------SPIIIL-ATNRGITKIRGTDIISPHGI 332 (398)
T ss_dssp EE-EEEEESGGGSB---------------HHHHHHHHHHHTSTT-----------EEEE-EES-SEEE-BTTS-EEETT-
T ss_pred ecceEEecchhhcc---------------HHHHHHHHHHhcCCC---------CcEEEE-ecCceeeeccCccCcCCCCC
Confidence 37899999999983 256677777765422 144444 4553 4457
Q ss_pred ChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCC
Q 001808 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1010)
Q Consensus 723 ~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s 777 (1010)
|..|+. |+- .+...+++.++..+|++..++..++.++++.+..++......+
T Consensus 333 P~DlLD--Rll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~S 384 (398)
T PF06068_consen 333 PLDLLD--RLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETS 384 (398)
T ss_dssp -HHHHT--TEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-
T ss_pred CcchHh--hcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhcc
Confidence 777777 665 6788999999999999999999999999998888776544433
No 255
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.70 E-value=2.2e-07 Score=115.14 Aligned_cols=201 Identities=13% Similarity=0.173 Sum_probs=121.2
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
.+..+.|.+..+.++.+.+..+.... .+|||+|++||||+++|+++.+..... ...++.+||..
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~~-------------~pvli~Ge~GtGK~~~A~~ih~~s~r~---~~pfv~vnc~~ 386 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKSS-------------FPVLLCGEEGVGKALLAQAIHNESERA---AGPYIAVNCQL 386 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCcC-------------CCEEEECCCCcCHHHHHHHHHHhCCcc---CCCeEEEECCC
Confidence 46678888999999999887765433 569999999999999999998875422 16789999998
Q ss_pred ccCCchhhHHHHHHHHHHH------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc
Q 001808 632 LSLEKGPIIRQALSNFISE------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (1010)
Q Consensus 632 l~~~~~~~~~~~l~~~f~~------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (1010)
+..... -.++|.. ......+.|||||++.+- . .+...|.+.++.-.-
T Consensus 387 ~~~~~~------~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~-----------~----~~Q~~Ll~~l~~~~~ 445 (638)
T PRK11388 387 YPDEAL------AEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS-----------P----ELQSALLQVLKTGVI 445 (638)
T ss_pred CChHHH------HHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC-----------H----HHHHHHHHHHhcCcE
Confidence 753211 1122221 111245689999999883 2 233334444432210
Q ss_pred c--cCCccCCCcEEEEEecCCcc-------ccChhhhcCCcc-cccccCCCCcH--HHHHHHHHHHhhhc------cccc
Q 001808 700 K--RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQRR------SLEC 761 (1010)
Q Consensus 700 ~--~~~~~~~~~v~vIattn~~~-------~L~~~L~r~gRf-~~~i~l~~P~~--~eR~~IL~~~l~~~------~~~~ 761 (1010)
. +.......++.+|++++..- .+.+.|.. |+ ...|.+|+... ++...++++++.+. ...+
T Consensus 446 ~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~ 523 (638)
T PRK11388 446 TRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKI 523 (638)
T ss_pred EeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCc
Confidence 0 00000011477888877521 12222222 22 22345555433 24445555555432 2457
Q ss_pred ChHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 762 SDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 762 ~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
+++.+..|..+.--.+.++|++++++++..
T Consensus 524 s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 524 DDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 888899888887555889999999987643
No 256
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.70 E-value=1.8e-08 Score=111.81 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=79.8
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhh--hhcccHHH----------HHHHHHHHhcCCCeEEEEe
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK--YIGASEQA----------VRDIFSKATAAAPCLLFFD 944 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~--~ig~se~~----------l~~lf~~A~~~~p~VLfiD 944 (1010)
.+.++||.||||||||++|+.+|..++.+++.+++...... ++|..... ....+..|. ..++++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 35689999999999999999999999999999988766554 45542211 112333443 346789999
Q ss_pred CCCccCCCCCCCCCcchHHHHHHHHHHhcC-----c-------cccCcEEEEEeCCC-------------------CcCC
Q 001808 945 EFDSIAPKRGHDNTGVTDRVVNQFLTELDG-----V-------EVLTGVFVFAATRL-------------------EFFH 993 (1010)
Q Consensus 945 Eid~l~~~R~~~~~~~~~rv~~~lL~~ldg-----~-------e~~~~v~viatTn~-------------------r~gR 993 (1010)
|++.+-| .+.+.|...|+. + .......||||+|. ...|
T Consensus 142 Ein~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDR 210 (327)
T TIGR01650 142 EYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDR 210 (327)
T ss_pred hhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhh
Confidence 9998843 344555555441 1 12246889999997 2336
Q ss_pred cceEEEecCCCcc
Q 001808 994 YNVLLFCSFIIFL 1006 (1010)
Q Consensus 994 ~d~~l~~~~p~~~ 1006 (1010)
|-..+.+++|+.+
T Consensus 211 F~i~~~~~Yp~~e 223 (327)
T TIGR01650 211 WSIVTTLNYLEHD 223 (327)
T ss_pred eeeEeeCCCCCHH
Confidence 6666667777654
No 257
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=1.2e-07 Score=114.61 Aligned_cols=118 Identities=25% Similarity=0.365 Sum_probs=84.9
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.+...+... +.+..+||+||+|||||++|+.+|+.+.+
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 67999999999999998887631 23345899999999999999999998742
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+++.+++.. +..-..+|++...+.. +...|+||||+|.+ +....|.||..|
T Consensus 81 ~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L-----------t~~a~naLLKtL 143 (559)
T PRK05563 81 AITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML-----------STGAFNALLKTL 143 (559)
T ss_pred HHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHHHh
Confidence 344444321 2234557778777653 34579999999988 345789999999
Q ss_pred cCccccC-cEEEEEeCCC
Q 001808 973 DGVEVLT-GVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~-~v~viatTn~ 989 (1010)
+. ... -++|++||+.
T Consensus 144 Ee--pp~~~ifIlatt~~ 159 (559)
T PRK05563 144 EE--PPAHVIFILATTEP 159 (559)
T ss_pred cC--CCCCeEEEEEeCCh
Confidence 73 333 4566666655
No 258
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.69 E-value=3.2e-07 Score=97.01 Aligned_cols=159 Identities=19% Similarity=0.308 Sum_probs=113.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcc---ee--------------------eeEEEEecccccCCchhhHHHHHHHH
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKD---LV--------------------AHIVFVCCSRLSLEKGPIIRQALSNF 647 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~---~~--------------------~~~~~i~~s~l~~~~~~~~~~~l~~~ 647 (1010)
.|+++|||+|+||-|.+.++.+++.-.+. .+ .+.+.++.++......-.++..++++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 46999999999999999999998842100 00 11233444444333333333334333
Q ss_pred HHHHH-----hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcccc
Q 001808 648 ISEAL-----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI 722 (1010)
Q Consensus 648 f~~a~-----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L 722 (1010)
-+... ...-.+++|-|+|.|.. .-...|.+-|+.|.. +..+|..+|+...+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~---------------dAQ~aLRRTMEkYs~---------~~RlIl~cns~Sri 170 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTR---------------DAQHALRRTMEKYSS---------NCRLILVCNSTSRI 170 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhH---------------HHHHHHHHHHHHHhc---------CceEEEEecCcccc
Confidence 22211 01123899999999851 344568888888875 47899999999999
Q ss_pred ChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 723 PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 723 ~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
-+++++ |.- .+.+|.|+.++...++...+.+.++.++.+.+..++..++|-
T Consensus 171 IepIrS--RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~n 221 (351)
T KOG2035|consen 171 IEPIRS--RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRN 221 (351)
T ss_pred hhHHhh--hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhccc
Confidence 899998 543 689999999999999999999999999999999999998874
No 259
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.1e-07 Score=113.22 Aligned_cols=119 Identities=24% Similarity=0.324 Sum_probs=81.0
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC---------------
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------------- 904 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~--------------- 904 (1010)
+..|+++.|++.+.+.|...+... +.+..+||+||||||||++|+++|+.+..
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 368999999999999998887631 22334699999999999999999998742
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+++.++... ...-..++++...+.. ..+.|+||||+|.+ +....+.||..|
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l-----------s~~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM-----------SKSAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECcccc-----------CHHHHHHHHHHH
Confidence 144444321 1123446666554432 35679999999876 345788999999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
+ +....+++|.+|+.
T Consensus 141 E--ep~~~t~~Il~t~~ 155 (504)
T PRK14963 141 E--EPPEHVIFILATTE 155 (504)
T ss_pred H--hCCCCEEEEEEcCC
Confidence 7 33344444444443
No 260
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.69 E-value=5.1e-08 Score=99.86 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=78.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhc-cCcceeeeEEEEecccccCCchhhHHHHHHHHHHHH----HhcCCeEEEEccch
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLE-HHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEA----LDHAPSIVIFDNLD 665 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~-~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a----~~~~PsIL~IDEiD 665 (1010)
..+||+||+|+|||.+|+++|+.+. ... ..++.+||+.+.. .++....+...+..+ ......||||||+|
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~---~~~~~~d~s~~~~--~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSE---RPLIRIDMSEYSE--GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSC---CEEEEEEGGGHCS--HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCc---cchHHHhhhcccc--cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 5699999999999999999999997 222 5789999999887 111112222222221 11222499999999
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc--ccCCccCCCcEEEEEecCCcc
Q 001808 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE--KRKSSCGIGPIAFVASAQSLE 720 (1010)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~--~~~~~~~~~~v~vIattn~~~ 720 (1010)
+..+. ...........+.+.|+.+++.-.- .........++++|+|+|--.
T Consensus 79 Ka~~~----~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 79 KAHPS----NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp GCSHT----TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hcccc----ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 98743 1111222345777888888876432 122235566899999998544
No 261
>PLN03025 replication factor C subunit; Provisional
Probab=98.68 E-value=7.7e-08 Score=108.92 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=71.1
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc-C----CcEEEEecchhh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S----LRFISVKGPELL 915 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~-g----~~~i~v~~~el~ 915 (1010)
..++++.|.+++.+.|...+... ...++||+||||||||++|+++|+.+ + ..++.++.++..
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 57889999999988887765521 12379999999999999999999987 2 346677766543
Q ss_pred hhhhcccHHHHHHHHHH---Hh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhc
Q 001808 916 NKYIGASEQAVRDIFSK---AT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1010)
Q Consensus 916 ~~~ig~se~~l~~lf~~---A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ld 973 (1010)
+. ..+++.... .. .+.+.|++|||+|.+. ....+.|+..|+
T Consensus 77 ~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE 124 (319)
T PLN03025 77 GI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTME 124 (319)
T ss_pred cH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHh
Confidence 21 123333222 11 1346799999999984 334677788786
No 262
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=5.8e-08 Score=117.16 Aligned_cols=118 Identities=20% Similarity=0.322 Sum_probs=83.1
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 57899999999999998887632 22345799999999999999999998753
Q ss_pred -------------cEEEEecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHH
Q 001808 905 -------------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1010)
Q Consensus 905 -------------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~ 967 (1010)
+++.++... ...-..+|++.+.+... +..|+||||+|.+ +....|.
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~L-----------s~~a~Na 143 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHML-----------TNTAFNA 143 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhC-----------CHHHHHH
Confidence 122332211 11234577777765433 3579999999998 3456899
Q ss_pred HHHHhcCccccCc-EEEEEeCCC
Q 001808 968 FLTELDGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 968 lL~~ldg~e~~~~-v~viatTn~ 989 (1010)
||..|+ +..+. ++|++||+.
T Consensus 144 LLKtLE--EPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 144 MLKTLE--EPPEYLKFVLATTDP 164 (618)
T ss_pred HHHhcc--cCCCCeEEEEEECCc
Confidence 999997 44444 555666654
No 263
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.68 E-value=4.4e-07 Score=109.18 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=124.3
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccc
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRL 632 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l 632 (1010)
...++|.+..+.++.+.+..+.... .+|||+|++||||+++|+++....... ...++.++|..+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~-------------~pVlI~Ge~GtGK~~~A~~ih~~s~r~---~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASD-------------LNVLILGETGVGKELVARAIHAASPRA---DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCC-------------CcEEEECCCCccHHHHHHHHHHhCCcC---CCCeEEEEcccC
Confidence 3467888899999999987765433 679999999999999999999875422 267899999987
Q ss_pred cCCchhh-HHHHHH-----------HHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--
Q 001808 633 SLEKGPI-IRQALS-----------NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1010)
Q Consensus 633 ~~~~~~~-~~~~l~-----------~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1010)
.....+. +-...+ ..|.. ...+.|||||++.|- . .+...|.+.++...
T Consensus 250 ~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~-----------~----~~Q~~Ll~~l~~~~~~ 311 (509)
T PRK05022 250 PESLAESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELP-----------L----ALQAKLLRVLQYGEIQ 311 (509)
T ss_pred ChHHHHHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCC-----------H----HHHHHHHHHHhcCCEe
Confidence 5321110 000000 01222 245689999999983 2 23333444443211
Q ss_pred cccCCccCCCcEEEEEecCCcc-------ccChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhhh-------ccccc
Q 001808 699 EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR-------RSLEC 761 (1010)
Q Consensus 699 ~~~~~~~~~~~v~vIattn~~~-------~L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~~-------~~~~~ 761 (1010)
.-+.......++.+|++++..- .+...|.. |+. ..|++|+... ++...++++++.+ ....+
T Consensus 312 ~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~ 389 (509)
T PRK05022 312 RVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRL 389 (509)
T ss_pred eCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCC
Confidence 0000001112578888887531 13333333 332 2345555533 3344455555443 12457
Q ss_pred ChHHHHhHhhhcCCCChhhHHHHHHHHHHHHH
Q 001808 762 SDEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1010)
Q Consensus 762 ~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~ 793 (1010)
+++.+..|..+.--.+.++|++++++++..+.
T Consensus 390 s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 390 SPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 88889998888766689999999999886553
No 264
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.68 E-value=7.3e-08 Score=120.14 Aligned_cols=118 Identities=19% Similarity=0.274 Sum_probs=80.7
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|++|.|++.+++.|...+... +....+||+||+|||||++|+++|+.+.+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 57999999999999998887621 22335899999999999999999999853
Q ss_pred ----------cEEEEecchhhhhhhcccHHHHHHHHHHH----hcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHH
Q 001808 905 ----------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1010)
Q Consensus 905 ----------~~i~v~~~el~~~~ig~se~~l~~lf~~A----~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~ 970 (1010)
+++.+++.... .-..+|++-+.+ ......|+||||+|.+ +....|.||+
T Consensus 80 ~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t~~a~NaLLK 142 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------TPQGFNALLK 142 (824)
T ss_pred HHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------CHHHHHHHHH
Confidence 13333322110 123344443332 3356789999999998 4567899999
Q ss_pred HhcCccccCcEEEEEeCCC
Q 001808 971 ELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 971 ~ldg~e~~~~v~viatTn~ 989 (1010)
.|+ +.-+.+++|.+|+.
T Consensus 143 ~LE--EpP~~~~fIl~tt~ 159 (824)
T PRK07764 143 IVE--EPPEHLKFIFATTE 159 (824)
T ss_pred HHh--CCCCCeEEEEEeCC
Confidence 997 44455544444443
No 265
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.68 E-value=1.2e-07 Score=109.72 Aligned_cols=208 Identities=18% Similarity=0.198 Sum_probs=126.8
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
....++|....++++.+.+..+.... .+|||+|++||||-.+||+|.+.-... ..+|+.+||..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~-------------a~VLI~GESGtGKElvAr~IH~~S~R~---~~PFVavNcaA 202 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSD-------------ASVLITGESGTGKELVARAIHQASPRA---KGPFIAVNCAA 202 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCC-------------CCEEEECCCCCcHHHHHHHHHhhCccc---CCCceeeeccc
Confidence 35578899999999999998876655 569999999999999999998865322 26899999988
Q ss_pred ccCCchhh-HHHHHHHHHHHHH--------hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH-Hhhcccc
Q 001808 632 LSLEKGPI-IRQALSNFISEAL--------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM-DEYGEKR 701 (1010)
Q Consensus 632 l~~~~~~~-~~~~l~~~f~~a~--------~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l-d~~~~~~ 701 (1010)
+.....+. +-..-+..|..|. ....+.||||||..+- ...+..+++.|.+.- ......
T Consensus 203 ip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~- 270 (464)
T COG2204 203 IPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGN- 270 (464)
T ss_pred CCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCC-
Confidence 76432211 1111111111111 1244699999997762 233345555443321 111111
Q ss_pred CCccCCCcEEEEEecCCcc-------ccChhhhcCCcccccccCCCCcHHHHH----HHHHHHhhh----c---ccccCh
Q 001808 702 KSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASERK----AILEHEIQR----R---SLECSD 763 (1010)
Q Consensus 702 ~~~~~~~~v~vIattn~~~-------~L~~~L~r~gRf~~~i~l~~P~~~eR~----~IL~~~l~~----~---~~~~~~ 763 (1010)
..-.-+|.+|++|+..= .+.+.|.- |+. ++.+..|...+|. .++++++.+ . ...+++
T Consensus 271 --~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~ 345 (464)
T COG2204 271 --KPIKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSP 345 (464)
T ss_pred --cccceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCH
Confidence 11123689999998521 12233332 333 4555555554443 445555543 2 234778
Q ss_pred HHHHhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 764 EILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 764 ~~l~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
+.+..+..+.---+.++|++++++++.-+
T Consensus 346 ~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 346 EALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 88888777754458899999999887443
No 266
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=4.5e-07 Score=102.43 Aligned_cols=179 Identities=15% Similarity=0.158 Sum_probs=108.3
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce--eeeEEEEecc
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL--VAHIVFVCCS 630 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~--~~~~~~i~~s 630 (1010)
+.++.|.+..++.+.+.+.. ...+..+||+||+|+|||++|+++|+.+...... ...+..+...
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~--------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~ 68 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIK--------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI 68 (313)
T ss_pred hhhccCcHHHHHHHHHHHHc--------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc
Confidence 55677777776666665422 1223558999999999999999999987432110 0112223221
Q ss_pred cccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcE
Q 001808 631 RLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPI 710 (1010)
Q Consensus 631 ~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v 710 (1010)
+-..-..+.++..+..+..........|++||++|.+- . .-.+.|+..+++... .+
T Consensus 69 ~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~----~a~naLLK~LEepp~---------~t 124 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------E----QAQNAFLKTIEEPPK---------GV 124 (313)
T ss_pred cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------H----HHHHHHHHHhcCCCC---------Ce
Confidence 11112233444433332222223345699999998873 1 223445555554332 35
Q ss_pred EEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 711 AFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 711 ~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
.+|.+++.++.+.+.+++ |.. .+++++|+.++....+...+. .++++.+..++..+.|-
T Consensus 125 ~~il~~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 125 FIILLCENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGI 183 (313)
T ss_pred EEEEEeCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCC
Confidence 666666778889999998 665 889999999998777765432 34566666777776663
No 267
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=1.1e-07 Score=113.52 Aligned_cols=118 Identities=19% Similarity=0.327 Sum_probs=81.9
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.+...+... +.+..+||+||+|||||++|+++|+.+..
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 57899999999999888877621 22345899999999999999999997743
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+++.+++..- .| -..++.+.+.+.. +...|+||||+|.+ +....+.||..|
T Consensus 81 ~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l-----------s~~a~naLLK~L 143 (546)
T PRK14957 81 AINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHML-----------SKQSFNALLKTL 143 (546)
T ss_pred HHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhc-----------cHHHHHHHHHHH
Confidence 3333333211 11 2345566555432 35679999999988 355789999999
Q ss_pred cCccccCc-EEEEEeCCC
Q 001808 973 DGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~-v~viatTn~ 989 (1010)
+ +..+. ++|++||+.
T Consensus 144 E--epp~~v~fIL~Ttd~ 159 (546)
T PRK14957 144 E--EPPEYVKFILATTDY 159 (546)
T ss_pred h--cCCCCceEEEEECCh
Confidence 7 43344 466666665
No 268
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.67 E-value=1.3e-07 Score=113.03 Aligned_cols=205 Identities=15% Similarity=0.158 Sum_probs=120.8
Q ss_pred ccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc
Q 001808 551 SNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS 630 (1010)
Q Consensus 551 ~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s 630 (1010)
..+.++.|....+..+.+.+..+.... .+|||+|++||||+++|+++....... ..+++.++|.
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~-------------~pVLI~GE~GTGKe~lA~~IH~~S~r~---~~pfv~inC~ 272 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSD-------------ATVLILGESGTGKELVAQAIHQLSGRR---DFPFVAINCG 272 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC-------------CcEEEECCCCcCHHHHHHHHHHhcCcC---CCCEEEeccc
Confidence 446678899999999999887765433 679999999999999999998764322 2679999999
Q ss_pred cccCCchhh-HHHH------------HHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001808 631 RLSLEKGPI-IRQA------------LSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1010)
Q Consensus 631 ~l~~~~~~~-~~~~------------l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1010)
.+.....+. +-.. -..+|.. ...+.|||||++.|- . .+...|.+.++..
T Consensus 273 ~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp-----------~----~~Q~~Ll~~L~~~ 334 (526)
T TIGR02329 273 AIAESLLEAELFGYEEGAFTGARRGGRTGLIEA---AHRGTLFLDEIGEMP-----------L----PLQTRLLRVLEER 334 (526)
T ss_pred cCChhHHHHHhcCCcccccccccccccccchhh---cCCceEEecChHhCC-----------H----HHHHHHHHHHhcC
Confidence 875321110 0000 0011222 234689999999983 2 3333344444332
Q ss_pred ccc--cCCccCCCcEEEEEecCCcc-------ccChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhhhc----cccc
Q 001808 698 GEK--RKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQRR----SLEC 761 (1010)
Q Consensus 698 ~~~--~~~~~~~~~v~vIattn~~~-------~L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~~~----~~~~ 761 (1010)
.-. +.......++.+|++++..- .+.+.|.. |+. ..+++|+... ++...++.+++.+. +..+
T Consensus 335 ~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 412 (526)
T TIGR02329 335 EVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPD 412 (526)
T ss_pred cEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 110 00011112467888876521 12222222 332 3455655543 34455566665542 3446
Q ss_pred ChHHHHh-------HhhhcCCCChhhHHHHHHHHHHH
Q 001808 762 SDEILLD-------VASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 762 ~~~~l~~-------la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
+++.+.. |..+.--.+.++|++++++++..
T Consensus 413 ~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 7776655 66655445788999999888644
No 269
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=1.2e-07 Score=113.63 Aligned_cols=118 Identities=21% Similarity=0.306 Sum_probs=80.3
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+++.|...+... +....+||+||+|||||++|+++|+.+...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 57899999999999998887631 223479999999999999999999998542
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHH----hcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A----~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+ +....+.||..|
T Consensus 81 ~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L-----------t~~a~naLLk~L 143 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML-----------TREAFNALLKTL 143 (624)
T ss_pred HHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhC-----------CHHHHHHHHHHh
Confidence 444433211 0112344433332 2345679999999998 345689999999
Q ss_pred cCccccCcE-EEEEeCCC
Q 001808 973 DGVEVLTGV-FVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v-~viatTn~ 989 (1010)
+ +....+ +|++||+.
T Consensus 144 E--EP~~~~ifILaTt~~ 159 (624)
T PRK14959 144 E--EPPARVTFVLATTEP 159 (624)
T ss_pred h--ccCCCEEEEEecCCh
Confidence 7 333444 55555553
No 270
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.66 E-value=2.1e-07 Score=96.71 Aligned_cols=123 Identities=25% Similarity=0.353 Sum_probs=94.1
Q ss_pred CCCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhh
Q 001808 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL 915 (1010)
Q Consensus 839 ~~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~ 915 (1010)
....+.++.|.+..++.+.+-.+.. .. -.|-.++||+|.-||||++++|++-.++ |.++++|+..++.
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F-------~~--G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQF-------AE--GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHH-------Hc--CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3477889999999999987665422 11 2346799999999999999999999887 6889999988876
Q ss_pred hhhhcccHHHHHHHHHHHhcCCC-eEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcC-cccc-CcEEEEEeCCC
Q 001808 916 NKYIGASEQAVRDIFSKATAAAP-CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG-VEVL-TGVFVFAATRL 989 (1010)
Q Consensus 916 ~~~ig~se~~l~~lf~~A~~~~p-~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg-~e~~-~~v~viatTn~ 989 (1010)
. +-.++...+..+. =|||+|+.- .+..+.....|-..||| ++.. ++|+|.||+||
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLS----------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLS----------FEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCC----------CCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 5 6667777665533 489999862 22344567889999997 4443 68999999999
No 271
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.64 E-value=1.5e-06 Score=94.99 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcc---eeeeEEEEecccccC----
Q 001808 562 TASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKD---LVAHIVFVCCSRLSL---- 634 (1010)
Q Consensus 562 ~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~---~~~~~~~i~~s~l~~---- 634 (1010)
...++.++|..++.... .....++||+|++|.|||++++.+++.-..... ...+++++.+-.-.+
T Consensus 41 ~A~~~L~~L~~Ll~~P~--------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 41 RAKEALDRLEELLEYPK--------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred HHHHHHHHHHHHHhCCc--------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHH
Confidence 34566677766543221 222345999999999999999999986532211 123566665432111
Q ss_pred ------------CchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccC
Q 001808 635 ------------EKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRK 702 (1010)
Q Consensus 635 ------------~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~ 702 (1010)
.......++-..+.......++.+|+|||+|.++. ++....+.+++.|..+...+.-
T Consensus 113 Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa--------Gs~~~qr~~Ln~LK~L~NeL~i--- 181 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA--------GSYRKQREFLNALKFLGNELQI--- 181 (302)
T ss_pred HHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc--------ccHHHHHHHHHHHHHHhhccCC---
Confidence 01111222222333444456788999999999873 1223344556655555433321
Q ss_pred CccCCCcEEEEEecCCccc--cChhhhcCCcccccccCCCCcH-HHHHHHHHHHhhhccc----cc-ChHHHHhHhhhcC
Q 001808 703 SSCGIGPIAFVASAQSLEK--IPQSLTSSGRFDFHVQLPAPAA-SERKAILEHEIQRRSL----EC-SDEILLDVASKCD 774 (1010)
Q Consensus 703 ~~~~~~~v~vIattn~~~~--L~~~L~r~gRf~~~i~l~~P~~-~eR~~IL~~~l~~~~~----~~-~~~~l~~la~~t~ 774 (1010)
+++.+||..-... -|+.+.+ ||. .+.+|.... ++-..++..+-....+ .+ +.+....+-..++
T Consensus 182 ------piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~ 252 (302)
T PF05621_consen 182 ------PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSE 252 (302)
T ss_pred ------CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcC
Confidence 3555555433332 3577777 998 677776644 3445566655443222 12 3445677888899
Q ss_pred CCChhhHHHHHHHHHHHHHHh
Q 001808 775 GYDAYDLEILVDRTVHAAVGR 795 (1010)
Q Consensus 775 g~s~~DL~~Lv~~A~~~a~~r 795 (1010)
|..+ ++..++..|+..|+..
T Consensus 253 G~iG-~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 253 GLIG-ELSRLLNAAAIAAIRS 272 (302)
T ss_pred CchH-HHHHHHHHHHHHHHhc
Confidence 8665 7888888887777654
No 272
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.64 E-value=4e-08 Score=113.26 Aligned_cols=141 Identities=23% Similarity=0.296 Sum_probs=105.9
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecch----
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPE---- 913 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~e---- 913 (1010)
..+++|.|-...-..+.+..... -+....+|+.|.+||||..+|+++...+ +.+|+.+||..
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 56788888776655555554421 1235789999999999999999999988 57899999844
Q ss_pred -----hhh----hhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--cc----
Q 001808 914 -----LLN----KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL---- 978 (1010)
Q Consensus 914 -----l~~----~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~~---- 978 (1010)
+++ .|.|+....-..+|+.|.++ .||+|||..+ .......||..|+.=+ .-
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCCCC
Confidence 343 35565554455788888777 9999999887 3557889999998311 11
Q ss_pred ---CcEEEEEeCCC------CcCCcceEEEecCCCcc
Q 001808 979 ---TGVFVFAATRL------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 979 ---~~v~viatTn~------r~gR~d~~l~~~~p~~~ 1006 (1010)
-.|-||||||+ .-|||...||+.+-...
T Consensus 377 ~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~ 413 (560)
T COG3829 377 PIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIP 413 (560)
T ss_pred ceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceee
Confidence 26999999999 88999999999875543
No 273
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=1.2e-07 Score=113.64 Aligned_cols=118 Identities=22% Similarity=0.358 Sum_probs=83.1
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+.+.+...+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 57999999999999998887631 223457999999999999999999988542
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.+++.. ...-..+|++...+.. +...|+||||+|.+ +....|.||..|
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l-----------s~~a~naLLK~L 143 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHML-----------SKSAFNAMLKTL 143 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccC-----------CHHHHHHHHHHH
Confidence 22222211 1123457777777643 34579999999988 345789999999
Q ss_pred cCccccCc-EEEEEeCCC
Q 001808 973 DGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~-v~viatTn~ 989 (1010)
+ +..+. ++|++||+.
T Consensus 144 E--epp~~~~fIL~t~d~ 159 (527)
T PRK14969 144 E--EPPEHVKFILATTDP 159 (527)
T ss_pred h--CCCCCEEEEEEeCCh
Confidence 7 33344 455566554
No 274
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.64 E-value=2.7e-07 Score=110.21 Aligned_cols=206 Identities=15% Similarity=0.139 Sum_probs=117.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcc-----CcceeeeEEE
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH-----HKDLVAHIVF 626 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~-----~~~~~~~~~~ 626 (1010)
.+.++.|.+..++++++.+..+.... .+|||+|++||||+++|+++...+.. ......+++.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~-------------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~ 283 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSS-------------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVA 283 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCC-------------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEE
Confidence 46678999999999999887765433 67999999999999999999886210 1112368999
Q ss_pred EecccccCCchhh-HHHHHH------------HHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHH
Q 001808 627 VCCSRLSLEKGPI-IRQALS------------NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDI 693 (1010)
Q Consensus 627 i~~s~l~~~~~~~-~~~~l~------------~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ 693 (1010)
+||..+.....+. +-...+ .+|.. ...+.|||||++.|- . .+...|.+.
T Consensus 284 inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~---A~gGTLfLdeI~~Lp-----------~----~~Q~kLl~~ 345 (538)
T PRK15424 284 VNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEI---AHGGTLFLDEIGEMP-----------L----PLQTRLLRV 345 (538)
T ss_pred eecccCChhhHHHHhcCCccccccCccccccCCchhc---cCCCEEEEcChHhCC-----------H----HHHHHHHhh
Confidence 9999876422111 000000 11222 234689999999883 2 333334444
Q ss_pred HHhhc--cccCCccCCCcEEEEEecCCc-cc------cChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhhh----c
Q 001808 694 MDEYG--EKRKSSCGIGPIAFVASAQSL-EK------IPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----R 757 (1010)
Q Consensus 694 ld~~~--~~~~~~~~~~~v~vIattn~~-~~------L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~~----~ 757 (1010)
++... .-+.......++.+|++++.. +. +.+.|.. |+. ..+++|+... ++...++++++.+ .
T Consensus 346 L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~ 423 (538)
T PRK15424 346 LEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAAL 423 (538)
T ss_pred hhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc
Confidence 43321 100001111256888888642 11 1222222 222 2345555433 3444556666654 3
Q ss_pred ccccChHHH-------HhHhhhcCCCChhhHHHHHHHHHH
Q 001808 758 SLECSDEIL-------LDVASKCDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 758 ~~~~~~~~l-------~~la~~t~g~s~~DL~~Lv~~A~~ 790 (1010)
+..++.+.+ ..+..+.--.+.++|++++++++.
T Consensus 424 ~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 424 SAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred CCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 444555544 344444434478899999998875
No 275
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.1e-08 Score=102.84 Aligned_cols=98 Identities=27% Similarity=0.452 Sum_probs=72.9
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-hhhhcccHHH-HHHHHHHH----hcCCCeEEEEeCCCccCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIGASEQA-VRDIFSKA----TAAAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~-~~~ig~se~~-l~~lf~~A----~~~~p~VLfiDEid~l~~ 951 (1010)
.+++||.||+|||||.||+.+|+.++.||..-++..+- ..|+|+.-++ +-.+++.| .++...|+||||||+++.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 57999999999999999999999999999988887775 3699987555 44455443 122344999999999985
Q ss_pred CCCCCC---CcchHHHHHHHHHHhcCc
Q 001808 952 KRGHDN---TGVTDRVVNQFLTELDGV 975 (1010)
Q Consensus 952 ~R~~~~---~~~~~rv~~~lL~~ldg~ 975 (1010)
+-...+ +-...-|...||..|.|.
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCc
Confidence 432111 111345788899999873
No 276
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.63 E-value=3e-07 Score=104.80 Aligned_cols=139 Identities=17% Similarity=0.260 Sum_probs=86.7
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC-----CcEEEEecchhh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPELL 915 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g-----~~~i~v~~~el~ 915 (1010)
..++++.|.+.+++.+...+..+ ...+++|+||||||||++|+++|+.+. .+++.++++++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 56888999999999988876521 113799999999999999999999873 357788887764
Q ss_pred hhh-------------hcc-------cHHHHHHHHHHHhc-----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHH
Q 001808 916 NKY-------------IGA-------SEQAVRDIFSKATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1010)
Q Consensus 916 ~~~-------------ig~-------se~~l~~lf~~A~~-----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~ 970 (1010)
... .+. ....++.+.+.... ..+.++||||+|.+. ....+.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~~L~~ 147 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQALRR 147 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHHHHHH
Confidence 321 111 01223333333222 234699999999873 234556777
Q ss_pred HhcCccccCcEEEEEeCCC------CcCCcceEEEecCCCc
Q 001808 971 ELDGVEVLTGVFVFAATRL------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 971 ~ldg~e~~~~v~viatTn~------r~gR~d~~l~~~~p~~ 1005 (1010)
.|+... ....+|+++++. .-.|. ..+.|..|+.
T Consensus 148 ~le~~~-~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~ 186 (337)
T PRK12402 148 IMEQYS-RTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTD 186 (337)
T ss_pred HHHhcc-CCCeEEEEeCChhhCchhhcCCc-eEEEecCCCH
Confidence 776322 234555555554 12343 4566665543
No 277
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=1.2e-07 Score=115.06 Aligned_cols=118 Identities=20% Similarity=0.357 Sum_probs=83.7
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 67999999999999998887631 234567999999999999999999997431
Q ss_pred ---------EEEEecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 906 ---------FISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 906 ---------~i~v~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++.+++.. ...-..++++...+... ...|+||||+|.+ +....|.||..|
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~L-----------t~~a~naLLk~L 143 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHML-----------STNAFNALLKTL 143 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhC-----------CHHHHHHHHHHH
Confidence 33333321 11234577777766433 3469999999988 345789999999
Q ss_pred cCccccCc-EEEEEeCCC
Q 001808 973 DGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~-v~viatTn~ 989 (1010)
+ +..+. ++|++||+.
T Consensus 144 E--epp~~~~fIl~t~~~ 159 (576)
T PRK14965 144 E--EPPPHVKFIFATTEP 159 (576)
T ss_pred H--cCCCCeEEEEEeCCh
Confidence 8 44444 455555554
No 278
>PHA02244 ATPase-like protein
Probab=98.63 E-value=5.6e-07 Score=101.14 Aligned_cols=128 Identities=16% Similarity=0.234 Sum_probs=75.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc----cccCCchhhHHHHHH-HHHHHHHhcCCeEEEEccch
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS----RLSLEKGPIIRQALS-NFISEALDHAPSIVIFDNLD 665 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s----~l~~~~~~~~~~~l~-~~f~~a~~~~PsIL~IDEiD 665 (1010)
.++||+||+|||||++|+++|..++ ..++.+++. .+.+.... ...+. .-+-.+. ..+.+|+|||++
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg------~pfv~In~l~d~~~L~G~i~~--~g~~~dgpLl~A~-~~GgvLiLDEId 190 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALD------LDFYFMNAIMDEFELKGFIDA--NGKFHETPFYEAF-KKGGLFFIDEID 190 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC------CCEEEEecChHHHhhcccccc--cccccchHHHHHh-hcCCEEEEeCcC
Confidence 5799999999999999999999987 445555432 11110000 00111 1112222 356799999998
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--cccCCccCCCcEEEEEecCCc-----------cccChhhhcCCcc
Q 001808 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRKSSCGIGPIAFVASAQSL-----------EKIPQSLTSSGRF 732 (1010)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~~~~~~~~v~vIattn~~-----------~~L~~~L~r~gRf 732 (1010)
.+-+ .....|...++... ..........++.+|+|+|.. ..++++++. ||
T Consensus 191 ~a~p---------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF 253 (383)
T PHA02244 191 ASIP---------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF 253 (383)
T ss_pred cCCH---------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc
Confidence 7631 22233444433111 000111112368999999973 457888888 99
Q ss_pred cccccCCCCcHHH
Q 001808 733 DFHVQLPAPAASE 745 (1010)
Q Consensus 733 ~~~i~l~~P~~~e 745 (1010)
. ++++..|+..+
T Consensus 254 v-~I~~dyp~~~E 265 (383)
T PHA02244 254 A-PIEFDYDEKIE 265 (383)
T ss_pred E-EeeCCCCcHHH
Confidence 7 78898888433
No 279
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.63 E-value=3.8e-07 Score=93.17 Aligned_cols=129 Identities=19% Similarity=0.222 Sum_probs=75.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC
Q 001808 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1010)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1010)
++|.+..+.++++.+..+.... .+|||+|++||||+.+|+++.+..... ..+++.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-------------~pVlI~GE~GtGK~~lA~~IH~~s~r~---~~pfi~vnc~~~~~~ 64 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-------------LPVLITGETGTGKELLARAIHNNSPRK---NGPFISVNCAALPEE 64 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-------------S-EEEECSTTSSHHHHHHHHHHCSTTT---TS-EEEEETTTS-HH
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-------------CCEEEEcCCCCcHHHHHHHHHHhhhcc---cCCeEEEehhhhhcc
Confidence 4577888999999887776533 779999999999999999998854322 268999999987532
Q ss_pred chhh-HH-----------HHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--ccc
Q 001808 636 KGPI-IR-----------QALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKR 701 (1010)
Q Consensus 636 ~~~~-~~-----------~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~ 701 (1010)
..+. +- ..-..+|..| ...+|||||++.|- . .+...|.+.++.-. ...
T Consensus 65 ~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L~-----------~----~~Q~~Ll~~l~~~~~~~~g 126 (168)
T PF00158_consen 65 LLESELFGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDLP-----------P----ELQAKLLRVLEEGKFTRLG 126 (168)
T ss_dssp HHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS------------H----HHHHHHHHHHHHSEEECCT
T ss_pred hhhhhhhccccccccccccccCCceeec---cceEEeecchhhhH-----------H----HHHHHHHHHHhhchhcccc
Confidence 1110 00 0000223332 44699999999984 2 33344444444321 111
Q ss_pred CCccCCCcEEEEEecCC
Q 001808 702 KSSCGIGPIAFVASAQS 718 (1010)
Q Consensus 702 ~~~~~~~~v~vIattn~ 718 (1010)
.......++.+|++|+.
T Consensus 127 ~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 127 SDKPVPVDVRIIASTSK 143 (168)
T ss_dssp SSSEEE--EEEEEEESS
T ss_pred ccccccccceEEeecCc
Confidence 11111236889998874
No 280
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=1.7e-07 Score=111.90 Aligned_cols=118 Identities=20% Similarity=0.252 Sum_probs=80.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+.+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 57899999999999988876521 23356999999999999999999998732
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+++.+++... ..-..+|.+...+... ...|++|||+|.+- ....+.||..|
T Consensus 81 ~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLKtL 143 (605)
T PRK05896 81 SINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLKTL 143 (605)
T ss_pred HHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHHHH
Confidence 2333332210 1223467777665443 34699999999883 34678999999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
+ +..+.+++|.+|+.
T Consensus 144 E--EPp~~tvfIL~Tt~ 158 (605)
T PRK05896 144 E--EPPKHVVFIFATTE 158 (605)
T ss_pred H--hCCCcEEEEEECCC
Confidence 8 44444555444443
No 281
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.62 E-value=2.9e-07 Score=106.02 Aligned_cols=133 Identities=17% Similarity=0.243 Sum_probs=76.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEec------cccc-CCchh-----hHHHHHHHHHHHHHh--cC
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC------SRLS-LEKGP-----IIRQALSNFISEALD--HA 655 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~------s~l~-~~~~~-----~~~~~l~~~f~~a~~--~~ 655 (1010)
+++++|+||||||||++|+.+|..+...... ..+..+.. .++. +.... .....+.+.+..|.. ..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~-~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAP-QRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCccc-ceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 3679999999999999999999988532110 11111111 1221 11111 011234455555554 35
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh------------ccc-cCCccCCCcEEEEEecCCcc--
Q 001808 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY------------GEK-RKSSCGIGPIAFVASAQSLE-- 720 (1010)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~------------~~~-~~~~~~~~~v~vIattn~~~-- 720 (1010)
|.+|||||++..-. .++...+..+++.- ... .....-..++.+|||+|..+
T Consensus 273 ~~vliIDEINRani--------------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs 338 (459)
T PRK11331 273 KYVFIIDEINRANL--------------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRS 338 (459)
T ss_pred CcEEEEehhhccCH--------------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccc
Confidence 78999999987521 12222222322211 000 01123346899999999876
Q ss_pred --ccChhhhcCCcccccccCCC
Q 001808 721 --KIPQSLTSSGRFDFHVQLPA 740 (1010)
Q Consensus 721 --~L~~~L~r~gRf~~~i~l~~ 740 (1010)
.++.+|+| ||. .+++.+
T Consensus 339 ~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 339 LAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hhhccHHHHh--hhh-eEEecC
Confidence 68999999 897 566654
No 282
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=2e-07 Score=109.85 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=79.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.+...+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 68999999999999988887631 23456899999999999999999998732
Q ss_pred ---------cEEEEecchhhhhhhcccHHHHHHHHHHH----hcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHH
Q 001808 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1010)
Q Consensus 905 ---------~~i~v~~~el~~~~ig~se~~l~~lf~~A----~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ 971 (1010)
+++.+++.... .-..++++-+.. ..+...|+||||+|.+. ....+.||..
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk~ 144 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLKT 144 (451)
T ss_pred HHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHHH
Confidence 23344332211 112344433332 22466899999999883 4467899999
Q ss_pred hcCccccCcEEEEEeCCC
Q 001808 972 LDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 972 ldg~e~~~~v~viatTn~ 989 (1010)
|+. ..+.+++|.+|+.
T Consensus 145 lEe--p~~~~~~Il~t~~ 160 (451)
T PRK06305 145 LEE--PPQHVKFFLATTE 160 (451)
T ss_pred hhc--CCCCceEEEEeCC
Confidence 984 3345544444443
No 283
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.61 E-value=5.3e-08 Score=110.73 Aligned_cols=137 Identities=25% Similarity=0.357 Sum_probs=86.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc------CCchhhHHHHHHHHHHHHHhc-----CC--
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS------LEKGPIIRQALSNFISEALDH-----AP-- 656 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~------~~~~~~~~~~l~~~f~~a~~~-----~P-- 656 (1010)
++++||.|+||||||++++.+|+.++ ..+..+.|..-. +.+.-... ... ...-.+. ..
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~~G~~~~~~~--~~~-~~~~~~~~gpl~~~~~ 113 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDLLGTYAYAAL--LLE-PGEFRFVPGPLFAAVR 113 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHhcCchhHhhh--hcc-CCeEEEecCCcccccc
Confidence 47899999999999999999999998 667777776432 22211111 000 0000000 11
Q ss_pred eEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCC---ccCCCcEEEEEecCC-----ccccChhhhc
Q 001808 657 SIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS---SCGIGPIAFVASAQS-----LEKIPQSLTS 728 (1010)
Q Consensus 657 sIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~---~~~~~~v~vIattn~-----~~~L~~~L~r 728 (1010)
.++++|||+..-+ .+...|...|++..-.... ..-..++++|+|.|+ ...+++++++
T Consensus 114 ~ill~DEInra~p---------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld 178 (329)
T COG0714 114 VILLLDEINRAPP---------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD 178 (329)
T ss_pred eEEEEeccccCCH---------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh
Confidence 3999999987531 5555666666663321111 112346888888894 4567899999
Q ss_pred CCcccccccCCCC-cHHHHHHHHHH
Q 001808 729 SGRFDFHVQLPAP-AASERKAILEH 752 (1010)
Q Consensus 729 ~gRf~~~i~l~~P-~~~eR~~IL~~ 752 (1010)
||...++++.| +.++...++..
T Consensus 179 --Rf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 179 --RFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred --hEEEEEecCCCCchHHHHHHHHh
Confidence 99778899999 45555444443
No 284
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.8e-07 Score=113.81 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=84.7
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+.+.|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 67999999999999998887632 223479999999999999999999998542
Q ss_pred -----------EEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHH
Q 001808 906 -----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLT 970 (1010)
Q Consensus 906 -----------~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~ 970 (1010)
++.++. ..+..-..+|++...+.. +...|+||||+|.+ +....+.||.
T Consensus 81 C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L-----------t~~a~naLLK 143 (620)
T PRK14948 81 CRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML-----------STAAFNALLK 143 (620)
T ss_pred HHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc-----------CHHHHHHHHH
Confidence 222221 112334578888877653 34579999999988 3457899999
Q ss_pred HhcCccccCcEE-EEEeCCC
Q 001808 971 ELDGVEVLTGVF-VFAATRL 989 (1010)
Q Consensus 971 ~ldg~e~~~~v~-viatTn~ 989 (1010)
.|+ +..+.++ |++|++.
T Consensus 144 ~LE--ePp~~tvfIL~t~~~ 161 (620)
T PRK14948 144 TLE--EPPPRVVFVLATTDP 161 (620)
T ss_pred HHh--cCCcCeEEEEEeCCh
Confidence 998 4444554 4455443
No 285
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.60 E-value=5.6e-08 Score=110.55 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=106.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchh---
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL--- 914 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el--- 914 (1010)
.....|.|...+...+.+.++... +....+|+.|.+||||..+|+++.+.. ..+|+.+|++.+
T Consensus 220 ~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 220 LEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred cccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 345667788877777777777542 335789999999999999999999998 478999998554
Q ss_pred ------hhh----hhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--ccC---
Q 001808 915 ------LNK----YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLT--- 979 (1010)
Q Consensus 915 ------~~~----~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~~~--- 979 (1010)
++- |.|+... -+.-|+.|.++ .||+|||..+. -.+...||..|+.-| ..+
T Consensus 289 LlESELFGHeKGAFTGA~~~-r~GrFElAdGG---TLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 289 LLESELFGHEKGAFTGAINT-RRGRFELADGG---TLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHhcccccccccchhc-cCcceeecCCC---eEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCc
Confidence 321 2332222 23455555555 99999998884 447888999998432 111
Q ss_pred ----cEEEEEeCCC------CcCCcceEEEecCCCcceec
Q 001808 980 ----GVFVFAATRL------EFFHYNVLLFCSFIIFLILL 1009 (1010)
Q Consensus 980 ----~v~viatTn~------r~gR~d~~l~~~~p~~~~~~ 1009 (1010)
.|-||||||| +-|+|...+|+.+..|++++
T Consensus 354 ~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~l 393 (550)
T COG3604 354 TIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLEL 393 (550)
T ss_pred eeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCC
Confidence 5999999999 99999999999988877653
No 286
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.60 E-value=1.5e-08 Score=100.06 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=64.4
Q ss_pred eEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhh--hhhcccHHH-------HHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN--KYIGASEQA-------VRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 880 ~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~--~~ig~se~~-------l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
++||+||||||||++|+.+|+.++.+++.+.++.... .+.|..... -..+.+.+ ..++++||||++.+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 5899999999999999999999999999888765332 111211100 00000111 15689999999987
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCcccc----------C-------cEEEEEeCCCC
Q 001808 951 PKRGHDNTGVTDRVVNQFLTELDGVEVL----------T-------GVFVFAATRLE 990 (1010)
Q Consensus 951 ~~R~~~~~~~~~rv~~~lL~~ldg~e~~----------~-------~v~viatTn~r 990 (1010)
...+++.|+..|+.-+.. . +..||||+|..
T Consensus 78 ----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 78 ----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred ----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 356888888888752211 1 38999999983
No 287
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.1e-07 Score=103.63 Aligned_cols=97 Identities=30% Similarity=0.503 Sum_probs=73.7
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-hhhhcccHH-HHHHHHHHHh----cCCCeEEEEeCCCccCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-NKYIGASEQ-AVRDIFSKAT----AAAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~-~~~ig~se~-~l~~lf~~A~----~~~p~VLfiDEid~l~~ 951 (1010)
.+++||.||+|+|||.||+.||+.++.+|...++..+- ..|+|+.-+ -+..++..|. +....|+||||+|++..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 57999999999999999999999999999999998875 569998744 4556666552 22345999999999984
Q ss_pred CCCC--CCCcc-hHHHHHHHHHHhcC
Q 001808 952 KRGH--DNTGV-TDRVVNQFLTELDG 974 (1010)
Q Consensus 952 ~R~~--~~~~~-~~rv~~~lL~~ldg 974 (1010)
+-.. ....+ .+-|...||+.+.|
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcc
Confidence 3221 11122 34578889999987
No 288
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=2.2e-07 Score=113.09 Aligned_cols=124 Identities=20% Similarity=0.375 Sum_probs=83.5
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEE--------E--
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS--------V-- 909 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~--------v-- 909 (1010)
+..|+++.|++.+.+.|...+... +....+||+||+|||||++|+++|+.+.+.--. +
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 368999999999999998887632 233457999999999999999999887442100 0
Q ss_pred ---ecchhhhhhhc---ccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccC
Q 001808 910 ---KGPELLNKYIG---ASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLT 979 (1010)
Q Consensus 910 ---~~~el~~~~ig---~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~ 979 (1010)
...+++. .-+ .+...+|++.+.+.. +...|++|||+|.+. ....+.||..|+ +..+
T Consensus 82 ~~~~~~Dvie-idaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLE--EPP~ 147 (725)
T PRK07133 82 NVNNSLDIIE-MDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLE--EPPK 147 (725)
T ss_pred hhcCCCcEEE-EeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhh--cCCC
Confidence 0001110 001 123457888877754 345799999999883 357899999998 4444
Q ss_pred c-EEEEEeCCC
Q 001808 980 G-VFVFAATRL 989 (1010)
Q Consensus 980 ~-v~viatTn~ 989 (1010)
. ++|++|++.
T Consensus 148 ~tifILaTte~ 158 (725)
T PRK07133 148 HVIFILATTEV 158 (725)
T ss_pred ceEEEEEcCCh
Confidence 4 555555554
No 289
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.5e-07 Score=107.79 Aligned_cols=118 Identities=21% Similarity=0.310 Sum_probs=80.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 67999999999999998877621 334569999999999999999999988542
Q ss_pred -----------------EEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHH
Q 001808 906 -----------------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRV 964 (1010)
Q Consensus 906 -----------------~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv 964 (1010)
++.+++.+. ..-..++++.+.+.. +...|+||||+|.+. ...
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~~~ 143 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------IAA 143 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------HHH
Confidence 222222110 113456666655532 244699999999883 345
Q ss_pred HHHHHHHhcCccccCc-EEEEEeCCC
Q 001808 965 VNQFLTELDGVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 965 ~~~lL~~ldg~e~~~~-v~viatTn~ 989 (1010)
.+.||..|+ +..+. ++|++|++.
T Consensus 144 ~~~LLk~LE--ep~~~t~~Il~t~~~ 167 (397)
T PRK14955 144 FNAFLKTLE--EPPPHAIFIFATTEL 167 (397)
T ss_pred HHHHHHHHh--cCCCCeEEEEEeCCh
Confidence 788999997 33344 455555443
No 290
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=9e-07 Score=100.00 Aligned_cols=156 Identities=17% Similarity=0.259 Sum_probs=100.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcce------------------eeeEEEEecccc-cCCchhhHHHHHHHHHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRL-SLEKGPIIRQALSNFISE 650 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~------------------~~~~~~i~~s~l-~~~~~~~~~~~l~~~f~~ 650 (1010)
+..+||+||+|+|||++|+++|+.+...... -..+..+....- ..-..+.++..+..+...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 3569999999999999999999998532100 011233322211 112345555544444333
Q ss_pred HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCC
Q 001808 651 ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSG 730 (1010)
Q Consensus 651 a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~g 730 (1010)
.......|++||++|.+-. .-.+.|+..+++... ++.+|.+|+.++.+.+.+++
T Consensus 102 ~~~~~~kv~iI~~a~~m~~---------------~aaNaLLK~LEEPp~---------~~~fiL~t~~~~~ll~TI~S-- 155 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNR---------------NAANALLKSLEEPSG---------DTVLLLISHQPSRLLPTIKS-- 155 (328)
T ss_pred cccCCCeEEEECChhhCCH---------------HHHHHHHHHHhCCCC---------CeEEEEEECChhhCcHHHHh--
Confidence 3344566999999999841 334445556665432 47888899999999999999
Q ss_pred cccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 731 RFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 731 Rf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
|.. .+.|++|+.++..+.|..... ..+++....++....|-
T Consensus 156 Rc~-~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 156 RCQ-QQACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGS 196 (328)
T ss_pred hce-eeeCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCC
Confidence 876 689999999988877765321 22344455566666663
No 291
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.58 E-value=4.3e-07 Score=110.43 Aligned_cols=141 Identities=22% Similarity=0.251 Sum_probs=85.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHH---------hcCCeEEEE
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEAL---------DHAPSIVIF 661 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~---------~~~PsIL~I 661 (1010)
+||||.|++|||||++++++++.+... ..++.+.+......-.+.+ .+...+.... .....+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 789999999999999999999987532 2345454422211111111 0111111111 123359999
Q ss_pred ccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCCccCCCcEEEEEecCCcc---ccChhhhcCCcccc
Q 001808 662 DNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSLE---KIPQSLTSSGRFDF 734 (1010)
Q Consensus 662 DEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~v~vIattn~~~---~L~~~L~r~gRf~~ 734 (1010)
||++.+-+ .+...|.+.|+.-. ..+.......++.+|+|+|..+ .+++.|.. ||..
T Consensus 91 DEi~rl~~---------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l 153 (589)
T TIGR02031 91 DMANLLDD---------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLAL 153 (589)
T ss_pred cchhhCCH---------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccC
Confidence 99998841 44455556665421 1111111123588999999865 68888888 9987
Q ss_pred cccCC-CCcHHHHHHHHHHHh
Q 001808 735 HVQLP-APAASERKAILEHEI 754 (1010)
Q Consensus 735 ~i~l~-~P~~~eR~~IL~~~l 754 (1010)
++.+. .|+.++|.+|++..+
T Consensus 154 ~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 154 HVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eeecCCCCCHHHHHHHHHHHH
Confidence 76654 456778888887654
No 292
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.58 E-value=2.6e-07 Score=114.04 Aligned_cols=114 Identities=22% Similarity=0.357 Sum_probs=76.2
Q ss_pred CCcCCCCchhhHHH---HHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhh
Q 001808 841 SGWDDVGGLTDIQN---AIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNK 917 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~---~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~ 917 (1010)
..++++.|++.+.. .+...+.. ....+++|+||||||||++|+++|+.++.+|+.++....
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~--- 88 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA--- 88 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh---
Confidence 56778888887663 45444431 123589999999999999999999999998888876421
Q ss_pred hhcccHHHHHHHHHHHh-----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 918 YIGASEQAVRDIFSKAT-----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 918 ~ig~se~~l~~lf~~A~-----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
+ ...++..+..+. .....+|||||+|.+. ....+.|+..|+. ..+++|++|..
T Consensus 89 --~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE~----g~IiLI~aTTe 146 (725)
T PRK13341 89 --G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVEN----GTITLIGATTE 146 (725)
T ss_pred --h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhcC----ceEEEEEecCC
Confidence 1 123444444431 2345799999999884 2345677877752 34666665543
No 293
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.58 E-value=5.1e-07 Score=111.06 Aligned_cols=146 Identities=20% Similarity=0.249 Sum_probs=82.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccC-----------c------------------ceeeeEEEEecccccCCchhh--
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHH-----------K------------------DLVAHIVFVCCSRLSLEKGPI-- 639 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~-----------~------------------~~~~~~~~i~~s~l~~~~~~~-- 639 (1010)
++|||.|++|||||++|+++++.+..- . .....++.+.++.....-.|.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 679999999999999999999987310 0 001233333333221111111
Q ss_pred HHHHHHH---HHHHH--HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh----ccccCCccCCCcE
Q 001808 640 IRQALSN---FISEA--LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEKRKSSCGIGPI 710 (1010)
Q Consensus 640 ~~~~l~~---~f~~a--~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~~~~~~~~~~v 710 (1010)
+++.+.. .++.. ......+|||||++.+-. .+...|.+.++.- ............+
T Consensus 106 ~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~---------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~ 170 (633)
T TIGR02442 106 IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD---------------HLVDVLLDAAAMGVNRVEREGLSVSHPARF 170 (633)
T ss_pred HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH---------------HHHHHHHHHHhcCCEEEEECCceeeecCCe
Confidence 1111100 00000 011335999999999841 4444555555532 1111111112358
Q ss_pred EEEEecCCcc-ccChhhhcCCcccccccCCCCc-HHHHHHHHHHH
Q 001808 711 AFVASAQSLE-KIPQSLTSSGRFDFHVQLPAPA-ASERKAILEHE 753 (1010)
Q Consensus 711 ~vIattn~~~-~L~~~L~r~gRf~~~i~l~~P~-~~eR~~IL~~~ 753 (1010)
.+|+++|..+ .+++.|.. ||...+.++.+. .+++.+|++..
T Consensus 171 ~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 171 VLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred EEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 8999988643 57888888 998888888774 57777777653
No 294
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.57 E-value=3.3e-07 Score=105.34 Aligned_cols=118 Identities=25% Similarity=0.336 Sum_probs=82.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|.+.+++.+...+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 67999999999999998877521 23456899999999999999999988642
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+++.+++.+ ......++.++..+... ...|++|||+|.+. ....+.||..|
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~~l 141 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLKTL 141 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHHHH
Confidence 233343321 12234577788776543 34699999999883 45688999999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
+. ....+++|.+|+.
T Consensus 142 e~--~~~~~~lIl~~~~ 156 (355)
T TIGR02397 142 EE--PPEHVVFILATTE 156 (355)
T ss_pred hC--CccceeEEEEeCC
Confidence 74 3345555555554
No 295
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.57 E-value=2.1e-07 Score=107.99 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHcCC--cEEE--Ee---cchhhhhhhcccHHHHHHHHHHHhcC---CCeEEEEeCC
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAACSL--RFIS--VK---GPELLNKYIGASEQAVRDIFSKATAA---APCLLFFDEF 946 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~g~--~~i~--v~---~~el~~~~ig~se~~l~~lf~~A~~~---~p~VLfiDEi 946 (1010)
.++++||+||||||||++|+++|..++. +|.. +. .+++++........ -..-|.+...+ ...++|+|||
T Consensus 38 ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~-~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 38 SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALK-DEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhh-hcCchhhhcCCccccccEEeeccc
Confidence 3689999999999999999999998753 2332 22 23443321000000 01223222222 2349999999
Q ss_pred CccCCCCCCCCCcchHHHHHHHHHHhcC-c-------cccCcEEEEEeCCCCc----------CCcceEEEecCCC
Q 001808 947 DSIAPKRGHDNTGVTDRVVNQFLTELDG-V-------EVLTGVFVFAATRLEF----------FHYNVLLFCSFII 1004 (1010)
Q Consensus 947 d~l~~~R~~~~~~~~~rv~~~lL~~ldg-~-------e~~~~v~viatTn~r~----------gR~d~~l~~~~p~ 1004 (1010)
..+ ...+.+.||..|.. . ...+.-++++|||..| .||-..+.+++|+
T Consensus 117 ~ra-----------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l~ 181 (498)
T PRK13531 117 WKA-----------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKVQ 181 (498)
T ss_pred ccC-----------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCCC
Confidence 866 46689999999941 1 1123346666668855 3665567777765
No 296
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.56 E-value=2.3e-08 Score=95.47 Aligned_cols=92 Identities=28% Similarity=0.423 Sum_probs=55.0
Q ss_pred eEEEeCCCCCChHHHHHHHHHHcCCcEEEEecc-hhhh-hhhccc----HH-----HHHHHHHHHhcCCCeEEEEeCCCc
Q 001808 880 NVLLYGPPGCGKTHIVGAAAAACSLRFISVKGP-ELLN-KYIGAS----EQ-----AVRDIFSKATAAAPCLLFFDEFDS 948 (1010)
Q Consensus 880 ~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~-el~~-~~ig~s----e~-----~l~~lf~~A~~~~p~VLfiDEid~ 948 (1010)
|+||.|+||+|||++|+++|+.+|..|.+|.+. ++.- ...|.. +. .-.-+| ..|+++||+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999988763 4431 111211 00 011122 24999999988
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhcCc---------cccCcEEEEEeCCC
Q 001808 949 IAPKRGHDNTGVTDRVVNQFLTELDGV---------EVLTGVFVFAATRL 989 (1010)
Q Consensus 949 l~~~R~~~~~~~~~rv~~~lL~~ldg~---------e~~~~v~viatTn~ 989 (1010)
. ..++.+.||+.|..- +--+..+||||-|.
T Consensus 74 a-----------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 74 A-----------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp S------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred C-----------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence 7 456899999999621 11156999999997
No 297
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.55 E-value=3.4e-06 Score=98.97 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccC
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~ 617 (1010)
.+.++.-+-|.|.+|||||++++++.+.+...
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 35667779999999999999999999988644
No 298
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.55 E-value=1.8e-07 Score=109.59 Aligned_cols=118 Identities=18% Similarity=0.272 Sum_probs=74.5
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccHH-HHHHHHHHHhcCCCeEEEEeCCCccCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se~-~l~~lf~~A~~~~p~VLfiDEid~l~~ 951 (1010)
..+++|+||+|+|||+|++++|.++ +..++.+++.++...+...... .+..+....+ ...+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 3568999999999999999999887 5678899988887665543221 1222222222 356999999999864
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC----------CcCCcce--EEEecCCCcc
Q 001808 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL----------EFFHYNV--LLFCSFIIFL 1006 (1010)
Q Consensus 952 ~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~----------r~gR~d~--~l~~~~p~~~ 1006 (1010)
++ .....|+..++.....+..+||+++.. ..+||.. .+.+..|+.+
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 32 122334444432222334455544433 4457764 6888888875
No 299
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.54 E-value=1.1e-07 Score=107.27 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=87.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc-------CC--cEEEEec
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SL--RFISVKG 911 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~-------g~--~~i~v~~ 911 (1010)
..|.++.|++++++.+.-....+ ...|+||.|+||||||++|+++|..+ +. .+..+.+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 46889999999988776433211 12689999999999999999999998 33 1221111
Q ss_pred -chh--------hh---------------hhhccc--HHH--------HHHHHHHHhcCCCeEEEEeCCCccCCCCCCCC
Q 001808 912 -PEL--------LN---------------KYIGAS--EQA--------VRDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 957 (1010)
Q Consensus 912 -~el--------~~---------------~~ig~s--e~~--------l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~ 957 (1010)
++. .. ..+|.. +.. -...+.+|.. .+||+||++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~---GiL~lDEInrl-------- 140 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANR---GYLYIDEVNLL-------- 140 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCC---CeEEecChHhC--------
Confidence 000 00 012210 000 0111122222 39999999998
Q ss_pred CcchHHHHHHHHHHhcCcc-----------ccCcEEEEEeCCC--------CcCCcceEEEecCCCc
Q 001808 958 TGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATRL--------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 958 ~~~~~rv~~~lL~~ldg~e-----------~~~~v~viatTn~--------r~gR~d~~l~~~~p~~ 1005 (1010)
...+.+.|+..|+.-. ...+++++||+|. ...||...+.++.|..
T Consensus 141 ---~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~ 204 (334)
T PRK13407 141 ---EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRD 204 (334)
T ss_pred ---CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCc
Confidence 4568889999996321 1246899999997 3468888888887754
No 300
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=4.3e-07 Score=105.01 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=82.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc------------EEE
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------------FIS 908 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~------------~i~ 908 (1010)
..|+++.|++.+.+.+...+... +.+.++||+||+|+|||++|+++|+.+... ++.
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 67999999999999998887632 234689999999999999999999987532 121
Q ss_pred EecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEE
Q 001808 909 VKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVF 984 (1010)
Q Consensus 909 v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~vi 984 (1010)
++.. .......++.+++.+.. +.+.|+|+||+|.+. ....+.|+..|+.. ....++|+
T Consensus 82 l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~~-~~~~~~Il 143 (367)
T PRK14970 82 LDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEEP-PAHAIFIL 143 (367)
T ss_pred eccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhCC-CCceEEEE
Confidence 2111 11223567788877643 245799999999773 34578899888742 12345555
Q ss_pred EeCCC
Q 001808 985 AATRL 989 (1010)
Q Consensus 985 atTn~ 989 (1010)
+|+++
T Consensus 144 ~~~~~ 148 (367)
T PRK14970 144 ATTEK 148 (367)
T ss_pred EeCCc
Confidence 66554
No 301
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.54 E-value=2.7e-07 Score=106.23 Aligned_cols=102 Identities=18% Similarity=0.381 Sum_probs=66.3
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCc-------EEEEec----chhhhhh----hccc--HHHHHHHHHHHhcC--CC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR-------FISVKG----PELLNKY----IGAS--EQAVRDIFSKATAA--AP 938 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~-------~i~v~~----~el~~~~----ig~s--e~~l~~lf~~A~~~--~p 938 (1010)
+.+++|+||||||||++|+.+|..+... ++.+.. .++++.+ +|.. ..-+.+++++|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5699999999999999999999987431 233322 2333222 1111 01234556677553 57
Q ss_pred eEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcC--------------------ccccCcEEEEEeCCC
Q 001808 939 CLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDG--------------------VEVLTGVFVFAATRL 989 (1010)
Q Consensus 939 ~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg--------------------~e~~~~v~viatTn~ 989 (1010)
++|||||++.... +++..++++.|+. +.--.+++||||+|.
T Consensus 274 ~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt 334 (459)
T PRK11331 274 YVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNT 334 (459)
T ss_pred cEEEEehhhccCH----------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCc
Confidence 9999999998753 4556666666651 112258999999998
No 302
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.53 E-value=4e-07 Score=109.35 Aligned_cols=142 Identities=18% Similarity=0.239 Sum_probs=83.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEE---EecccccCCchhhHHHHHHHH-HHH--HHhcCCeEEEEcc
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF---VCCSRLSLEKGPIIRQALSNF-ISE--ALDHAPSIVIFDN 663 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~---i~~s~l~~~~~~~~~~~l~~~-f~~--a~~~~PsIL~IDE 663 (1010)
..+|||+|+||+|||++|+++++..... .+.. .+|..+........ .-.++ ++. .......+++|||
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~~~~~~~l~~~~~~~~--~~g~~~~~~G~l~~A~~Gil~iDE 308 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGKGSSAVGLTAAVTRDP--ETREFTLEGGALVLADNGVCCIDE 308 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCCCCCcCCccccceEcc--CcceEEecCccEEecCCCEEEEec
Confidence 3479999999999999999999976421 1111 12322221110000 00000 000 0112356999999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc---cc-cCCccCCCcEEEEEecCCcc-------------ccChhh
Q 001808 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE-------------KIPQSL 726 (1010)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~v~vIattn~~~-------------~L~~~L 726 (1010)
+|.+-. .....|.+.|+.-. .+ +....-.....+||++|+.+ .+++++
T Consensus 309 i~~l~~---------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~l 373 (509)
T smart00350 309 FDKMDD---------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPI 373 (509)
T ss_pred hhhCCH---------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHH
Confidence 999731 33344555554321 11 11111123588999999853 488999
Q ss_pred hcCCcccccc-cCCCCcHHHHHHHHHHHhh
Q 001808 727 TSSGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1010)
Q Consensus 727 ~r~gRf~~~i-~l~~P~~~eR~~IL~~~l~ 755 (1010)
++ ||+..+ ....|+.+...+|+++.+.
T Consensus 374 Ls--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 374 LS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred hC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99 998654 5578999999999887654
No 303
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.53 E-value=8.3e-07 Score=108.51 Aligned_cols=61 Identities=28% Similarity=0.561 Sum_probs=46.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc----------CCcEEEEe
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~----------g~~~i~v~ 910 (1010)
..++++.|.+...+.+...+..+ .+.+++|+||||||||++|+++++.. +.+|+.++
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 57888999888777765554321 23579999999999999999998765 35688888
Q ss_pred cchh
Q 001808 911 GPEL 914 (1010)
Q Consensus 911 ~~el 914 (1010)
+..+
T Consensus 218 ~~~l 221 (615)
T TIGR02903 218 GTTL 221 (615)
T ss_pred chhc
Confidence 7654
No 304
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.4e-06 Score=96.06 Aligned_cols=187 Identities=14% Similarity=0.148 Sum_probs=110.4
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce------------
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------ 620 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~------------ 620 (1010)
+.++.|.+..++.+.+.+..- ..+..+||+||+|+||+++|+++|+.+-.....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~--------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~ 68 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN--------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGN 68 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCC
Confidence 557788888777776655331 123569999999999999999999997432100
Q ss_pred eeeEEEEecccc-cCCc---------------hhhH-HHHHHHHHHHHH----hcCCeEEEEccchhhhcCCCCCCCCCC
Q 001808 621 VAHIVFVCCSRL-SLEK---------------GPII-RQALSNFISEAL----DHAPSIVIFDNLDSIISSSSDPEGSQP 679 (1010)
Q Consensus 621 ~~~~~~i~~s~l-~~~~---------------~~~~-~~~l~~~f~~a~----~~~PsIL~IDEiD~L~~~~~~~~~~~~ 679 (1010)
...+.++.+... .+.. ...+ -..++++.+.+. .....|++||++|.+-.
T Consensus 69 hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~---------- 138 (314)
T PRK07399 69 HPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE---------- 138 (314)
T ss_pred CCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH----------
Confidence 011222222110 0100 0000 012333333322 23456999999998831
Q ss_pred chhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhccc
Q 001808 680 STSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSL 759 (1010)
Q Consensus 680 ~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~ 759 (1010)
.-.+.|+..+++.. . ..+|..++.++.+.+.+++ |.. .+.+++++.++..++|+........
T Consensus 139 -----~aaNaLLK~LEEPp-~---------~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~ 200 (314)
T PRK07399 139 -----AAANALLKTLEEPG-N---------GTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL 200 (314)
T ss_pred -----HHHHHHHHHHhCCC-C---------CeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc
Confidence 33445666666543 1 3566667788899999999 765 7899999999999998865332111
Q ss_pred ccChHHHHhHhhhcCCCChhhHHHHH
Q 001808 760 ECSDEILLDVASKCDGYDAYDLEILV 785 (1010)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv 785 (1010)
+.....++....| +++....++
T Consensus 201 ---~~~~~~l~~~a~G-s~~~al~~l 222 (314)
T PRK07399 201 ---NINFPELLALAQG-SPGAAIANI 222 (314)
T ss_pred ---hhHHHHHHHHcCC-CHHHHHHHH
Confidence 1124566666666 444443333
No 305
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=1.6e-06 Score=105.18 Aligned_cols=198 Identities=15% Similarity=0.193 Sum_probs=106.1
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
.++++.|.+..++++...+..... ...+++.++|+||+||||||+++.+|+.++..... ..-.++|..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~----------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E--w~npv~~~~ 149 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL----------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE--WSNPTLPDF 149 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc----------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH--Hhhhhhhcc
Confidence 456777777777777666544321 12334459999999999999999999988632110 001122211
Q ss_pred ccCC------------chhhHHHHHHHHHHHHH----------hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHH
Q 001808 632 LSLE------------KGPIIRQALSNFISEAL----------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKF 689 (1010)
Q Consensus 632 l~~~------------~~~~~~~~l~~~f~~a~----------~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~ 689 (1010)
.... ......+.+..++..+. .....||||||++.++. . .. ..
T Consensus 150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~---r-----~~----~~--- 214 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFY---R-----DT----RA--- 214 (637)
T ss_pred cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhch---h-----hH----HH---
Confidence 1100 00111233444444443 13456999999998762 0 01 11
Q ss_pred HHHHHH-hhccccCCccCCCcEEEEEecCCc------c-c------cChhhhcCCcccccccCCCCcHHHHHHHHHHHhh
Q 001808 690 LVDIMD-EYGEKRKSSCGIGPIAFVASAQSL------E-K------IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQ 755 (1010)
Q Consensus 690 L~~~ld-~~~~~~~~~~~~~~v~vIattn~~------~-~------L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~ 755 (1010)
+.+++. .+.... .-++++|.+-+.. + . +.+++++..|.. +|.|++.+..+..+.|+.++.
T Consensus 215 lq~lLr~~~~e~~-----~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 215 LHEILRWKYVSIG-----RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred HHHHHHHHhhcCC-----CceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHH
Confidence 222222 111111 1133333332211 0 1 235666433443 689999999998888888777
Q ss_pred hcccc------c-ChHHHHhHhhhcCCCChhhHHHHHH
Q 001808 756 RRSLE------C-SDEILLDVASKCDGYDAYDLEILVD 786 (1010)
Q Consensus 756 ~~~~~------~-~~~~l~~la~~t~g~s~~DL~~Lv~ 786 (1010)
..+.. + +++.+..++....| |++.++.
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn 322 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAIN 322 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHhCCC----hHHHHHH
Confidence 54321 2 34677788876666 5555443
No 306
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.52 E-value=2.3e-06 Score=101.03 Aligned_cols=233 Identities=20% Similarity=0.236 Sum_probs=139.8
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc----cCcceeeeEEEEecc
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE----HHKDLVAHIVFVCCS 630 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~----~~~~~~~~~~~i~~s 630 (1010)
+|.+.+....+|-..+...+... ..+..+.+.|-||||||.+++.+.+.|. ........++++|+-
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~----------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm 466 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ----------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGL 466 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC----------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcce
Confidence 45567777788877776665531 1123599999999999999999999875 222222445566655
Q ss_pred cccCCchhhH------------------HHHHHHHHHHH-HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHH
Q 001808 631 RLSLEKGPII------------------RQALSNFISEA-LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLV 691 (1010)
Q Consensus 631 ~l~~~~~~~~------------------~~~l~~~f~~a-~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~ 691 (1010)
.+.+ ..++ -..+...|... ....+.||+|||+|.|+..+ +.+ |.
T Consensus 467 ~l~~--~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~------------QdV---lY 529 (767)
T KOG1514|consen 467 RLAS--PREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS------------QDV---LY 529 (767)
T ss_pred eecC--HHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc------------HHH---HH
Confidence 5443 1111 11122222211 12356799999999998311 133 44
Q ss_pred HHHHhhccccCCccCCCcEEEEEecCCccccChhhhcC---Cccc-ccccCCCCcHHHHHHHHHHHhhhcccccChHHHH
Q 001808 692 DIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS---GRFD-FHVQLPAPAASERKAILEHEIQRRSLECSDEILL 767 (1010)
Q Consensus 692 ~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~---gRf~-~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~ 767 (1010)
++.++...... .+++|+.+|..+ ++..++.. .|.+ ..+.|.+++..|..+|+...+... ..+..+.++
T Consensus 530 n~fdWpt~~~s------KLvvi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aie 601 (767)
T KOG1514|consen 530 NIFDWPTLKNS------KLVVIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIE 601 (767)
T ss_pred HHhcCCcCCCC------ceEEEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHH
Confidence 44554433222 478888887654 33333221 1443 358999999999999999888754 335566666
Q ss_pred hHhhhcCCCC--hhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhccccc
Q 001808 768 DVASKCDGYD--AYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1010)
Q Consensus 768 ~la~~t~g~s--~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~~P~ 826 (1010)
.+|+.....+ .+-...+|++|...+-.+.... .......++..++.+|+.++..+
T Consensus 602 lvarkVAavSGDaRraldic~RA~Eia~~~~~~~----k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 602 LVARKVAAVSGDARRALDICRRAAEIAEERNVKG----KLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc----cccccceeehHHHHHHHHHHhhh
Confidence 6666543333 3444566888887776664311 11223457788899998876543
No 307
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.51 E-value=1.9e-06 Score=114.24 Aligned_cols=329 Identities=17% Similarity=0.254 Sum_probs=181.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHH---HHhcCC----eEEEEcc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISE---ALDHAP----SIVIFDN 663 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~---a~~~~P----sIL~IDE 663 (1010)
..++++|++|+|||.++............ ..++.+...+. ......+...++. ..+..| .++|+||
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~-----~~~~fs~~ts~--~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREV-----YLLNFSSVTSS--ELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDD 200 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchh-----eEEeeeeeccH--HHHHHHHHHHHHHhcccCCCCCCCceeEEEEec
Confidence 56999999999999999988776542221 11222221111 1111111111111 112222 3899999
Q ss_pred chhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcc----ccChhhhcCCcccccccCC
Q 001808 664 LDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLE----KIPQSLTSSGRFDFHVQLP 739 (1010)
Q Consensus 664 iD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~----~L~~~L~r~gRf~~~i~l~ 739 (1010)
+++.. .+..+.+.. ..+.+++.+....+......+..+-++.++++++++. .+++.+.| .|. .+.+.
T Consensus 201 inmp~---~~~yg~q~~---~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f~-~~~~~ 271 (1395)
T KOG3595|consen 201 INMPA---LDKYGDQPP---IELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGRNDITERFLR--HFL-IVSLN 271 (1395)
T ss_pred cCCch---hhhcCCccH---HHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCccCcccHHHHH--Hee-eEeeC
Confidence 98876 444544433 3566666665555555445566677899999999633 35566665 444 67889
Q ss_pred CCcHHHHHHHHHHHhhhcccccChHH---HHhHhhh------------c-------CCCChhhH----------------
Q 001808 740 APAASERKAILEHEIQRRSLECSDEI---LLDVASK------------C-------DGYDAYDL---------------- 781 (1010)
Q Consensus 740 ~P~~~eR~~IL~~~l~~~~~~~~~~~---l~~la~~------------t-------~g~s~~DL---------------- 781 (1010)
.|+.+....|+..++..+.. +.+.. ...++.. . .-|+.+|+
T Consensus 272 ~~~~~sl~~if~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~ 350 (1395)
T KOG3595|consen 272 YPSQESLTQIFNTILTGHLR-FAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALL 350 (1395)
T ss_pred CCChhhHHHHHHHHHhcccC-ccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhc
Confidence 99999999999988775422 11111 1111110 0 11344443
Q ss_pred --HHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhcc-------ccccccccccccCCCCCCCcCCCCchhhH
Q 001808 782 --EILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEF-------LPVAMRDITKTSAEGGRSGWDDVGGLTDI 852 (1010)
Q Consensus 782 --~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~~-------~P~~lr~v~~~~~~~~~~~~~dI~Gl~~v 852 (1010)
..+++-+.|.+.+-+...-.. ..+.....+.+...+... .|....+..... ...|..+-..+.+
T Consensus 351 ~~~~l~~~~~~e~~rv~~drlv~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~~~~~~~l 423 (1395)
T KOG3595|consen 351 TLEDLIRLWVHEAIRVFADRLVD---DEDRQWFDKKLQEVLLKLFEADSLQMPLLYGDFRSES----HKIYEEVLSVELL 423 (1395)
T ss_pred cHHHHHHHHHHHHHHhhhhhccc---HHHHHHHHHHHHHHHHHHhhhhhhcCCceeeeccccc----ccccCchHhHHHH
Confidence 344555666666554321110 011111112222221111 111111111110 1356666666666
Q ss_pred HHHHHHHhhccC----------------CCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhh
Q 001808 853 QNAIKEMIELPS----------------KFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN 916 (1010)
Q Consensus 853 k~~L~e~i~~~~----------------k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~ 916 (1010)
+..+...+..-. .|.-...+.-.+++++.++.|..|+||+++.+.++..++..++.+.....++
T Consensus 424 ~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~~~~~y~ 503 (1395)
T KOG3595|consen 424 RGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIEITRSYN 503 (1395)
T ss_pred HHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeeeccccCc
Confidence 666555444221 1111122333468999999999999999999999999999999988766544
Q ss_pred hhhcccHHHHHHHHHHHhcCCC-eEEEEeC
Q 001808 917 KYIGASEQAVRDIFSKATAAAP-CLLFFDE 945 (1010)
Q Consensus 917 ~~ig~se~~l~~lf~~A~~~~p-~VLfiDE 945 (1010)
.......++.+...|..... .++.++|
T Consensus 504 --~~~~~~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 504 --IEDFREDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred --HHHHHHHHHHHHHHhccCCCceEEeech
Confidence 34456678888888866544 3555555
No 308
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=5.6e-07 Score=108.48 Aligned_cols=119 Identities=22% Similarity=0.314 Sum_probs=81.6
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc--------------
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------- 905 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~-------------- 905 (1010)
+..|+++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+...
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 367999999999999998887621 223469999999999999999999987532
Q ss_pred ----------EEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHH
Q 001808 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1010)
Q Consensus 906 ----------~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ 971 (1010)
++.+++.. ...-..++++.+.+. .+...|++|||+|.+ +....|.||..
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L-----------s~~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML-----------SNSAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc-----------CHHHHHHHHHh
Confidence 22222211 011245666654433 345679999999988 34578999999
Q ss_pred hcCccccCcEEEEEeCCC
Q 001808 972 LDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 972 ldg~e~~~~v~viatTn~ 989 (1010)
|+ +....+++|.+|+.
T Consensus 143 LE--epp~~~vfI~~tte 158 (563)
T PRK06647 143 IE--EPPPYIVFIFATTE 158 (563)
T ss_pred hc--cCCCCEEEEEecCC
Confidence 97 44445555444443
No 309
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.50 E-value=2.5e-06 Score=90.61 Aligned_cols=96 Identities=18% Similarity=0.240 Sum_probs=66.5
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCC-------------ccc
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQS-------------LEK 721 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~-------------~~~ 721 (1010)
-|.+|||||+|+|- -+.+.+|...++.-- .+++++ ++|+ |+.
T Consensus 296 vPGVLFIDEVhMLD---------------iEcFTyL~kalES~i---------aPivif-AsNrG~~~irGt~d~~sPhG 350 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLD---------------IECFTYLHKALESPI---------APIVIF-ASNRGMCTIRGTEDILSPHG 350 (456)
T ss_pred cCcceEeeehhhhh---------------hHHHHHHHHHhcCCC---------CceEEE-ecCCcceeecCCcCCCCCCC
Confidence 58899999999872 144555655554321 244444 4443 445
Q ss_pred cChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCCh
Q 001808 722 IPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDA 778 (1010)
Q Consensus 722 L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~ 778 (1010)
+++.|+. |.- .+...+++.++..+|++...+..++.++++.+..++.....-+.
T Consensus 351 ip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsL 404 (456)
T KOG1942|consen 351 IPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSL 404 (456)
T ss_pred CCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhH
Confidence 6777776 654 56777788889999999998888999999999988876544333
No 310
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.50 E-value=9.4e-07 Score=100.06 Aligned_cols=130 Identities=25% Similarity=0.315 Sum_probs=86.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCcc------------------eeeeEEEEecccccCCchhhHHHHHHHHHHHHHh
Q 001808 592 HILIHGPPGSGKTSLAKAVAKSLEHHKD------------------LVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD 653 (1010)
Q Consensus 592 ~VLL~GppGtGKTtLaraLA~~L~~~~~------------------~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~ 653 (1010)
.+||+||||+|||++|.++|+.+..... ....+..++.++..... .....++++.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 4999999999999999999999863211 11357778887766542 122233333333322
Q ss_pred ----cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcC
Q 001808 654 ----HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS 729 (1010)
Q Consensus 654 ----~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~ 729 (1010)
...-|++|||+|.+.. .-.+.+...++.... +..+|.+||.+..+-+.+++
T Consensus 104 ~~~~~~~kviiidead~mt~---------------~A~nallk~lEep~~---------~~~~il~~n~~~~il~tI~S- 158 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTE---------------DAANALLKTLEEPPK---------NTRFILITNDPSKILPTIRS- 158 (325)
T ss_pred CCCCCCceEEEeCcHHHHhH---------------HHHHHHHHHhccCCC---------CeEEEEEcCChhhccchhhh-
Confidence 3456999999999852 333445555555443 47888999999998888888
Q ss_pred CcccccccCCCCcHHHHHHHH
Q 001808 730 GRFDFHVQLPAPAASERKAIL 750 (1010)
Q Consensus 730 gRf~~~i~l~~P~~~eR~~IL 750 (1010)
|.. .+.|++|+........
T Consensus 159 -Rc~-~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 159 -RCQ-RIRFKPPSRLEAIAWL 177 (325)
T ss_pred -cce-eeecCCchHHHHHHHh
Confidence 655 6788776655544333
No 311
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.49 E-value=7.9e-07 Score=106.20 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=55.3
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhh------hc----------------------c
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY------IG----------------------A 921 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~------ig----------------------~ 921 (1010)
.++.+++-+|+.||||+|||+++..++... |.+.+.+...|-...+ .| .
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 467788999999999999999997766543 6677777654432211 01 0
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 922 se~~l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
.+..+..+.+.+....|.+++||=+..+.
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 14556677777777789999999887664
No 312
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.48 E-value=2.9e-07 Score=109.14 Aligned_cols=118 Identities=16% Similarity=0.258 Sum_probs=74.4
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R 953 (1010)
.+++|+||+|||||+|++++|..+ +..++.+++.++.+.+.+........-|... -..+++|+|||++.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK-YRSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH-HhcCCEEEEehhhhhcCCH
Confidence 469999999999999999999987 5668899998887766544322212223222 1246799999999986432
Q ss_pred CCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC----------CcCCcc--eEEEecCCCcc
Q 001808 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL----------EFFHYN--VLLFCSFIIFL 1006 (1010)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~----------r~gR~d--~~l~~~~p~~~ 1006 (1010)
. ....|+..++.....+..+||+++.. ...||. ..+.+..|+.+
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 1 22334444432222233344444433 245776 46777888875
No 313
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=7.7e-07 Score=107.90 Aligned_cols=123 Identities=23% Similarity=0.373 Sum_probs=81.1
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEE-----------EE
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI-----------SV 909 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i-----------~v 909 (1010)
..|+++.|++.+.+.|...+... +.+..+||+||+|||||++|+++|+.+.+.-- .-
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 57999999999999998877521 33456999999999999999999999855210 00
Q ss_pred ec-------------chhhhhhhcc---cHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHH
Q 001808 910 KG-------------PELLNKYIGA---SEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFL 969 (1010)
Q Consensus 910 ~~-------------~el~~~~ig~---se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL 969 (1010)
.+ .++ ..+.|. .-..++++.+.+. .+...|++|||+|.+. ....+.||
T Consensus 81 Cg~C~sC~~~~~g~~~n~-~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a~naLL 148 (620)
T PRK14954 81 CGECESCRDFDAGTSLNI-SEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAAFNAFL 148 (620)
T ss_pred CccCHHHHHHhccCCCCe-EEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHHHHHHH
Confidence 00 000 001121 1345666665552 2345799999999883 34678999
Q ss_pred HHhcCccccC-cEEEEEeCCC
Q 001808 970 TELDGVEVLT-GVFVFAATRL 989 (1010)
Q Consensus 970 ~~ldg~e~~~-~v~viatTn~ 989 (1010)
..|+ +..+ -++|++|++.
T Consensus 149 K~LE--ePp~~tv~IL~t~~~ 167 (620)
T PRK14954 149 KTLE--EPPPHAIFIFATTEL 167 (620)
T ss_pred HHHh--CCCCCeEEEEEeCCh
Confidence 9997 3333 4556666554
No 314
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2e-06 Score=93.28 Aligned_cols=114 Identities=20% Similarity=0.286 Sum_probs=68.9
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-cccCCccCCCcEEEEEecC----CccccChhhhcC
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-EKRKSSCGIGPIAFVASAQ----SLEKIPQSLTSS 729 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-~~~~~~~~~~~v~vIattn----~~~~L~~~L~r~ 729 (1010)
+.+|+||||+|.++.......+ .-..+.+.+-|+-+.+... ...-.......+++||+.- .|.+|-|.|.-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~---dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG- 325 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGP---DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG- 325 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCC---CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC-
Confidence 3469999999999853321111 1122344444555444322 1112233445788888753 36667778876
Q ss_pred CcccccccCCCCcHHHHHHHHH----HH-------hhh--cccccChHHHHhHhhhc
Q 001808 730 GRFDFHVQLPAPAASERKAILE----HE-------IQR--RSLECSDEILLDVASKC 773 (1010)
Q Consensus 730 gRf~~~i~l~~P~~~eR~~IL~----~~-------l~~--~~~~~~~~~l~~la~~t 773 (1010)
||+..+++...+.+....||. .+ +.. ..+.++++.+..+|...
T Consensus 326 -RfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 326 -RFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred -CCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 999999999999999988874 11 111 22446777776666543
No 315
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.46 E-value=2.7e-07 Score=113.78 Aligned_cols=335 Identities=14% Similarity=0.068 Sum_probs=163.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHH-HHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHh----------c
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAK-AVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD----------H 654 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLar-aLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~----------~ 654 (1010)
.+...++++++||||+|||+|.- ++-.++- ..+++++.+.-... +..+.-+=+...- .
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~------~ev~~~Nfs~~t~T-----~s~ls~Ler~t~yy~~tg~~~l~P 1558 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELI------TEVKYFNFSTCTMT-----PSKLSVLERETEYYPNTGVVRLYP 1558 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhh------eeeeEEeeccccCC-----HHHHHHHHhhceeeccCCeEEEcc
Confidence 34556889999999999999753 3333332 55666665542211 1111111111110 0
Q ss_pred C----CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccC-----hh
Q 001808 655 A----PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIP-----QS 725 (1010)
Q Consensus 655 ~----PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~-----~~ 725 (1010)
+ .-|||.|||+..- .....++... -+++.|+..-.-++.-...|..+.++.+.++||++.+.. ..
T Consensus 1559 K~~vK~lVLFcDeInLp~---~~~y~~~~vI---~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1559 KPVVKDLVLFCDEINLPY---GFEYYPPTVI---VFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred CcchhheEEEeeccCCcc---ccccCCCceE---EeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 1 1389999998432 2333322211 233333333222344444567777899999999977643 33
Q ss_pred hhcCCcccccccCCCCcHHHHHHHHHHHhhhccccc------ChHHH--------------HhHhhhcCCCChhhHHHHH
Q 001808 726 LTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC------SDEIL--------------LDVASKCDGYDAYDLEILV 785 (1010)
Q Consensus 726 L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~------~~~~l--------------~~la~~t~g~s~~DL~~Lv 785 (1010)
+.| -...+.+..|.......|.+.++.+--+.. +++.. ........||+|+||...+
T Consensus 1633 f~r---~~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~l 1709 (3164)
T COG5245 1633 FIR---KPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSL 1709 (3164)
T ss_pred Hhc---CceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHH
Confidence 332 123467789999999999887765422211 11111 1112233689999987776
Q ss_pred HHHHHHHHHhhcccCCc----------------ccccccCcccccchhhhhhccccccccccccccCCCCCCCcCCCC--
Q 001808 786 DRTVHAAVGRYLHSDSS----------------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVG-- 847 (1010)
Q Consensus 786 ~~A~~~a~~r~~~~~~~----------------~~~~~~~~lt~eDf~~Al~~~~P~~lr~v~~~~~~~~~~~~~dI~-- 847 (1010)
+...-.+-.+....+.. .-...+..-.+.++.+......| +.....-......+.+|-
T Consensus 1710 r~i~~yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~qkE~st~~q~ly~~~~~~~~----e~~~g~i~e~~I~fS~Il~~ 1785 (3164)
T COG5245 1710 RAIFGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQKESSTSRQDLYDFGLRAIR----EMIAGHIGEAEITFSMILFF 1785 (3164)
T ss_pred HHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh----hhhhcccchhhhhHHHHHhc
Confidence 54332221111000000 00000000111111111111111 000000000011122211
Q ss_pred chhh-HHHHHHHHhhcc-----CC--------------CcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEE
Q 001808 848 GLTD-IQNAIKEMIELP-----SK--------------FPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFI 907 (1010)
Q Consensus 848 Gl~~-vk~~L~e~i~~~-----~k--------------~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i 907 (1010)
|+.. .++.+.-.++.. .. |.-++.+.-...++|.+|.|..|+||+.+.+++|+.-+.+++
T Consensus 1786 g~~~l~k~dl~~fvEe~~K~F~sshl~v~~V~~~~~l~HiLr~~R~l~~vggh~~l~g~~~~g~~~~~efvcwlN~~~m~ 1865 (3164)
T COG5245 1786 GMACLLKKDLAVFVEEVRKIFGSSHLDVEAVAYKDALLHILRSRRGLLVVGGHGVLKGVLIRGACDAREFVCWLNPRNMR 1865 (3164)
T ss_pred cHHHHhhhhHHHHHHHHHHHhcccCCCCceeeeHHHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHHHHHhCccchh
Confidence 1111 111122111100 00 111223333456789999999999999999999999999888
Q ss_pred EEecchhhhhhhcccHHHHHHHHHHHhc-CCCeEEEEeCC
Q 001808 908 SVKGPELLNKYIGASEQAVRDIFSKATA-AAPCLLFFDEF 946 (1010)
Q Consensus 908 ~v~~~el~~~~ig~se~~l~~lf~~A~~-~~p~VLfiDEi 946 (1010)
++.+..-.. +|+.+..+......+.- +...++||||-
T Consensus 1866 e~~~hr~~~--~~Df~d~lk~~~~~~~~~~~r~Cl~I~Es 1903 (3164)
T COG5245 1866 EIFGHRDEL--TGDFRDSLKVQDLRRNIHGGRECLFIFES 1903 (3164)
T ss_pred hhhcccccc--hhhHHHHHHHHHHhccccCCceEEEEecC
Confidence 887765443 66766666555554422 34456777765
No 316
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=6.7e-07 Score=108.24 Aligned_cols=124 Identities=22% Similarity=0.302 Sum_probs=83.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEe--------c-
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVK--------G- 911 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~--------~- 911 (1010)
..++++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 57899999999999998887632 33557999999999999999999998854321111 0
Q ss_pred ------------chhhhhh--hcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhc
Q 001808 912 ------------PELLNKY--IGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1010)
Q Consensus 912 ------------~el~~~~--ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ld 973 (1010)
++++... ..-.-..+|++.+.++.. ...|+||||+|.+. ....|.||..|+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~naLLKtLE 157 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAFNALLKTLE 157 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHHHHHHHHHH
Confidence 1111000 001134678887776543 45799999999983 456899999997
Q ss_pred CccccCc-EEEEEeCCC
Q 001808 974 GVEVLTG-VFVFAATRL 989 (1010)
Q Consensus 974 g~e~~~~-v~viatTn~ 989 (1010)
+..+. ++|++||+.
T Consensus 158 --ePp~~~~fIl~tte~ 172 (598)
T PRK09111 158 --EPPPHVKFIFATTEI 172 (598)
T ss_pred --hCCCCeEEEEEeCCh
Confidence 43344 455555544
No 317
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=8.5e-07 Score=105.29 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=80.9
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.+...+... +.+..+||+||+|+|||++|+++|..+..
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 57899999999999998887521 22345789999999999999999998752
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
+++.++++. ...-..+|.+.+.+.. +.+.|++|||+|.+. ....+.||..|
T Consensus 81 ~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~L 143 (486)
T PRK14953 81 EIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLKTL 143 (486)
T ss_pred HHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHHHH
Confidence 122221110 1122345666655543 345799999999873 44678899999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
+.. ....++|++||+.
T Consensus 144 Eep-p~~~v~Il~tt~~ 159 (486)
T PRK14953 144 EEP-PPRTIFILCTTEY 159 (486)
T ss_pred hcC-CCCeEEEEEECCH
Confidence 742 2245666676654
No 318
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.44 E-value=5.7e-07 Score=97.24 Aligned_cols=154 Identities=20% Similarity=0.269 Sum_probs=104.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHh-------cCCeEEEEccc
Q 001808 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALD-------HAPSIVIFDNL 664 (1010)
Q Consensus 592 ~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~-------~~PsIL~IDEi 664 (1010)
|.|+|||||+|||+...+.|+.+.........+...+.++-.+-.. .+..+. .|..+.. ..+.++++||+
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~--vr~qi~-~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDP--VRQQIH-LFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcc--hHHHHH-HHHhhccceeccccCceeEEEecch
Confidence 8999999999999999999999975333223344455555443322 222222 2333321 25679999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHH
Q 001808 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAAS 744 (1010)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~ 744 (1010)
|++.. .-...|.+....+.. ++.+...+|++..+.|++++ |+. .+.+.+.+..
T Consensus 141 DaMT~---------------~AQnALRRviek~t~---------n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~ 193 (360)
T KOG0990|consen 141 DAMTR---------------DAQNALRRVIEKYTA---------NTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMA 193 (360)
T ss_pred hHhhH---------------HHHHHHHHHHHHhcc---------ceEEEEeccChhhcCchhhc--ccc-cCCCCCCChh
Confidence 99851 223345555555543 47777889999999999999 887 6778888888
Q ss_pred HHHHHHHHHhhhcccccChHHHHhHhhhcCC
Q 001808 745 ERKAILEHEIQRRSLECSDEILLDVASKCDG 775 (1010)
Q Consensus 745 eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g 775 (1010)
+....+.+.++......+++....+++..-|
T Consensus 194 ~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 194 QQTERQSHIRESEQKETNPEGYSALGRLSVG 224 (360)
T ss_pred hhhhHHHHHHhcchhhcCHHHHHHHHHHhHH
Confidence 8888888887766666666666666555444
No 319
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=6e-06 Score=93.60 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=111.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce----------------
Q 001808 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (1010)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~---------------- 620 (1010)
.|.....+++.+.+.. ...+..+||+||+|+||+++|+++|+.+-.....
T Consensus 5 PWl~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~ 70 (334)
T PRK07993 5 PWLRPDYEQLVGSYQA--------------GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQA 70 (334)
T ss_pred CCChHHHHHHHHHHHc--------------CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 4666666666664422 1223569999999999999999999998432100
Q ss_pred --eeeEEEEecccc-cCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001808 621 --VAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1010)
Q Consensus 621 --~~~~~~i~~s~l-~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1010)
-..+.++....- ..-..+.++...+.+..........|++||++|.+- ..-.+.|+..+++-
T Consensus 71 g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEP 135 (334)
T PRK07993 71 GTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT---------------DAAANALLKTLEEP 135 (334)
T ss_pred CCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhC---------------HHHHHHHHHHhcCC
Confidence 011223322211 112345556555544444444556699999999984 13344555556553
Q ss_pred ccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCC
Q 001808 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGY 776 (1010)
Q Consensus 698 ~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~ 776 (1010)
.. .+++|..+..++.+.|.++| |.. .+.+++|+.++..+.|... ..++++....++..+.|-
T Consensus 136 p~---------~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~ 197 (334)
T PRK07993 136 PE---------NTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGA 197 (334)
T ss_pred CC---------CeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCC
Confidence 32 58888899999999999999 776 6899999998877776531 124455555666666663
No 320
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.43 E-value=5e-08 Score=93.19 Aligned_cols=113 Identities=23% Similarity=0.306 Sum_probs=56.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc------cccCCchhhHHHHHHHHHHHHHhcC---CeEEEEc
Q 001808 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS------RLSLEKGPIIRQALSNFISEALDHA---PSIVIFD 662 (1010)
Q Consensus 592 ~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s------~l~~~~~~~~~~~l~~~f~~a~~~~---PsIL~ID 662 (1010)
|+||.|+||+|||++++++|+.++ ..+..+.|. ++.+...-..+. ..|. .... ..|+++|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~--~~~GPif~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------LSFKRIQFTPDLLPSDILGFPVYDQET---GEFE--FRPGPIFTNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHHEEEEEETTT---TEEE--EEE-TT-SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------CceeEEEecCCCCcccceeeeeeccCC---CeeE--eecChhhhceeeec
Confidence 699999999999999999999998 445555543 122111100000 0000 0011 2499999
Q ss_pred cchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc--cCCccCCCcEEEEEecCCcc-----ccChhhhcCCcc
Q 001808 663 NLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK--RKSSCGIGPIAFVASAQSLE-----KIPQSLTSSGRF 732 (1010)
Q Consensus 663 EiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~--~~~~~~~~~v~vIattn~~~-----~L~~~L~r~gRf 732 (1010)
|++..-+ +....|++.|.+..-. +....-..+..+|||.|+.+ .++.++.. ||
T Consensus 70 EiNrapp---------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 70 EINRAPP---------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp TGGGS-H---------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ccccCCH---------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 9988632 4455566666654321 01111223688999999866 46777776 66
No 321
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.43 E-value=1e-06 Score=103.84 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=77.4
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHH--------hcCCCeEEEEeCCCc
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKA--------TAAAPCLLFFDEFDS 948 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A--------~~~~p~VLfiDEid~ 948 (1010)
+..-+||+||||-||||||+.+|+.+|+.++++|++|--. ...++.....| ....|.+|++||||-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 3467889999999999999999999999999999988432 22333333332 125788999999987
Q ss_pred cCCCCCCCCCcchHHHHHHHHHHhc-------CccccC------------cEEEEEeCCC------CcCC-cceEEEecC
Q 001808 949 IAPKRGHDNTGVTDRVVNQFLTELD-------GVEVLT------------GVFVFAATRL------EFFH-YNVLLFCSF 1002 (1010)
Q Consensus 949 l~~~R~~~~~~~~~rv~~~lL~~ld-------g~e~~~------------~v~viatTn~------r~gR-~d~~l~~~~ 1002 (1010)
.. ...++.+|..+. |-+... .--||+-+|. ||-| |-.+++|..
T Consensus 399 a~-----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~ 467 (877)
T KOG1969|consen 399 AP-----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVP 467 (877)
T ss_pred Cc-----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecC
Confidence 53 345666666664 111100 1234555555 5555 899999998
Q ss_pred CCcce
Q 001808 1003 IIFLI 1007 (1010)
Q Consensus 1003 p~~~~ 1007 (1010)
|.-..
T Consensus 468 p~~s~ 472 (877)
T KOG1969|consen 468 PSQSR 472 (877)
T ss_pred CChhH
Confidence 86543
No 322
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=8.9e-07 Score=108.03 Aligned_cols=119 Identities=21% Similarity=0.346 Sum_probs=79.2
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc---------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR--------------- 905 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~--------------- 905 (1010)
..|+++.|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c 80 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMC 80 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHH
Confidence 57999999999999998877521 223457999999999999999999887421
Q ss_pred ----------EEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHH
Q 001808 906 ----------FISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1010)
Q Consensus 906 ----------~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ 971 (1010)
++.++... ...-..++++...+.. ....|+||||+|.+. ....+.||..
T Consensus 81 ~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLLk~ 143 (585)
T PRK14950 81 RAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALLKT 143 (585)
T ss_pred HHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHHHH
Confidence 22222211 1112345665554432 345699999999883 4568899999
Q ss_pred hcCccccCcEEEEEeCCC
Q 001808 972 LDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 972 ldg~e~~~~v~viatTn~ 989 (1010)
|+... ..-++|+++++.
T Consensus 144 LEepp-~~tv~Il~t~~~ 160 (585)
T PRK14950 144 LEEPP-PHAIFILATTEV 160 (585)
T ss_pred HhcCC-CCeEEEEEeCCh
Confidence 97422 233555555544
No 323
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.43 E-value=5e-07 Score=106.38 Aligned_cols=72 Identities=19% Similarity=0.413 Sum_probs=52.0
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccH-HHHHHHHHHHhcCCCeEEEEeCCCccCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASE-QAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se-~~l~~lf~~A~~~~p~VLfiDEid~l~~ 951 (1010)
.+++||||+|||||+|++++|..+ +..++.++..++...+..... ..+.. |.......+.+|+|||++.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 469999999999999999999886 457888898888776543321 12222 2222223578999999998864
No 324
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.42 E-value=3.4e-06 Score=89.96 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=90.7
Q ss_pred CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecC-----------CccccC
Q 001808 655 APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQ-----------SLEKIP 723 (1010)
Q Consensus 655 ~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn-----------~~~~L~ 723 (1010)
-|.+|||||+|+|- -+-+.+|.+.++.-- .++++++|-. +++.+|
T Consensus 288 vpGVLFIDEvHMLD---------------IEcFsFlNrAlE~d~---------~PiiimaTNrgit~iRGTn~~SphGiP 343 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD---------------IECFSFLNRALENDM---------APIIIMATNRGITRIRGTNYRSPHGIP 343 (454)
T ss_pred ccceEEEeeehhhh---------------hHHHHHHHHHhhhcc---------CcEEEEEcCCceEEeecCCCCCCCCCc
Confidence 48899999999872 144556666555321 1455554432 244567
Q ss_pred hhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHHhhcccCCcc
Q 001808 724 QSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTVHAAVGRYLHSDSSF 803 (1010)
Q Consensus 724 ~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~r~~~~~~~~ 803 (1010)
-.|+. |.- .+...+++.++..+||+..+......+.++.++.+......-+.+---.|+..+...+.+|
T Consensus 344 ~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr-------- 412 (454)
T KOG2680|consen 344 IDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR-------- 412 (454)
T ss_pred HHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh--------
Confidence 66666 554 6788899999999999999998888899998888877766655555556666666666655
Q ss_pred cccccCcccccchhhhhhcccc
Q 001808 804 EKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 804 ~~~~~~~lt~eDf~~Al~~~~P 825 (1010)
....+..+|+..+.+-|..
T Consensus 413 ---k~~~v~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 413 ---KGKVVEVDDIERVYRLFLD 431 (454)
T ss_pred ---cCceeehhHHHHHHHHHhh
Confidence 2245667788887766544
No 325
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=7.5e-06 Score=92.04 Aligned_cols=156 Identities=13% Similarity=0.135 Sum_probs=100.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce----------------
Q 001808 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (1010)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~---------------- 620 (1010)
+|.....+.+.+.+.. ...+..+||+||+|+||+++|+++|+.+-.....
T Consensus 5 PW~~~~~~~l~~~~~~--------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~ 70 (325)
T PRK06871 5 PWLQPTYQQITQAFQQ--------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQA 70 (325)
T ss_pred cchHHHHHHHHHHHHc--------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc
Confidence 5676666666664432 1123569999999999999999999988532100
Q ss_pred --eeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001808 621 --VAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1010)
Q Consensus 621 --~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1010)
-..+.++...+-..-..+.++.....+..........|++||++|.+- . .-.+.|+..+++-.
T Consensus 71 g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~-----------~----~AaNaLLKtLEEPp 135 (325)
T PRK06871 71 GNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLT-----------E----AAANALLKTLEEPR 135 (325)
T ss_pred CCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhC-----------H----HHHHHHHHHhcCCC
Confidence 011233332111112345555544444333333445699999999984 1 33444555555533
Q ss_pred cccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHH
Q 001808 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHE 753 (1010)
Q Consensus 699 ~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~ 753 (1010)
. .+.+|.+|+.++.+.|.+++ |.. .+.+++|+.++..+.|...
T Consensus 136 ~---------~~~fiL~t~~~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 136 P---------NTYFLLQADLSAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred C---------CeEEEEEECChHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 2 57888899999999999999 765 7889999999887777653
No 326
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.42 E-value=2.6e-07 Score=108.43 Aligned_cols=130 Identities=22% Similarity=0.326 Sum_probs=95.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc-------EEEE----
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------FISV---- 909 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~-------~i~v---- 909 (1010)
..|+++.|++.+.+.|...+... |....+||.||.|||||++||.+|+.+++. +..+
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 57899999999999999998743 334579999999999999999999998543 1111
Q ss_pred --ec---chhhhhhhc---ccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc
Q 001808 910 --KG---PELLNKYIG---ASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV 977 (1010)
Q Consensus 910 --~~---~el~~~~ig---~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~ 977 (1010)
+. .|+.. +.+ ..-.++|++-+++.- +++.|.+|||++.+ +....|.||+-|. |.
T Consensus 81 ~I~~g~~~DviE-iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML-----------S~~afNALLKTLE--EP 146 (515)
T COG2812 81 EINEGSLIDVIE-IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML-----------SKQAFNALLKTLE--EP 146 (515)
T ss_pred hhhcCCcccchh-hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh-----------hHHHHHHHhcccc--cC
Confidence 10 11111 111 123568888888754 35679999999998 5678999999997 44
Q ss_pred c-CcEEEEEeCCC---------CcCCcce
Q 001808 978 L-TGVFVFAATRL---------EFFHYNV 996 (1010)
Q Consensus 978 ~-~~v~viatTn~---------r~gR~d~ 996 (1010)
- .-+||+|||+. |+.|||.
T Consensus 147 P~hV~FIlATTe~~Kip~TIlSRcq~f~f 175 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILSRCQRFDF 175 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhhccccccc
Confidence 3 45778888887 7777774
No 327
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.2e-06 Score=97.29 Aligned_cols=135 Identities=18% Similarity=0.197 Sum_probs=84.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcce------------------eeeEEEEecccccCCchhhHHHHHHHHHHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL------------------VAHIVFVCCSRLSLEKGPIIRQALSNFISEA 651 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~------------------~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a 651 (1010)
+..+||+||+|+||+++|+++|+.+-..... ...+.++.... ..-..+.++..+..+-...
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~-~~i~id~ir~l~~~~~~~~ 106 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPDG-QSIKKDQIRYLKEEFSKSG 106 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecccc-ccCCHHHHHHHHHHHhhCC
Confidence 3558999999999999999999987432100 01122222211 0112233333332221111
Q ss_pred HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCc
Q 001808 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1010)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gR 731 (1010)
......|++|||+|.+- ....+.|+..+++... .+.+|.+++.++.+.+.+++ |
T Consensus 107 ~~~~~kvviI~~a~~~~---------------~~a~NaLLK~LEEPp~---------~~~~Il~t~~~~~ll~TIrS--R 160 (329)
T PRK08058 107 VESNKKVYIIEHADKMT---------------ASAANSLLKFLEEPSG---------GTTAILLTENKHQILPTILS--R 160 (329)
T ss_pred cccCceEEEeehHhhhC---------------HHHHHHHHHHhcCCCC---------CceEEEEeCChHhCcHHHHh--h
Confidence 22344699999999883 1334456666665432 36777788888899999998 6
Q ss_pred ccccccCCCCcHHHHHHHHHH
Q 001808 732 FDFHVQLPAPAASERKAILEH 752 (1010)
Q Consensus 732 f~~~i~l~~P~~~eR~~IL~~ 752 (1010)
.. .+++++|+.++..++++.
T Consensus 161 c~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 161 CQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ce-eeeCCCCCHHHHHHHHHH
Confidence 65 789999999988777753
No 328
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.40 E-value=1.1e-06 Score=94.39 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=57.0
Q ss_pred CchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccH
Q 001808 847 GGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASE 923 (1010)
Q Consensus 847 ~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se 923 (1010)
++...+.+.+...+. .....+++|+||+|||||++|++++..+ +.+++.+++.++....
T Consensus 20 ~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----- 81 (226)
T TIGR03420 20 GGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----- 81 (226)
T ss_pred CCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH-----
Confidence 345556666665543 1235689999999999999999999887 4678888887775432
Q ss_pred HHHHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 924 QAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 924 ~~l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
..++.... ...+|+|||++.+.
T Consensus 82 ---~~~~~~~~--~~~lLvIDdi~~l~ 103 (226)
T TIGR03420 82 ---PEVLEGLE--QADLVCLDDVEAIA 103 (226)
T ss_pred ---HHHHhhcc--cCCEEEEeChhhhc
Confidence 23333322 34599999999885
No 329
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.40 E-value=1.7e-06 Score=102.63 Aligned_cols=200 Identities=14% Similarity=0.165 Sum_probs=115.1
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1010)
.+.|....++.+.+.+..+... ..+++|+|++||||+++|+++........ ..++.++|..+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~---~~~v~v~c~~~~~ 203 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAPS-------------DITVLLLGESGTGKEVLARALHQLSDRKD---KRFVAINCAAIPE 203 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhCC-------------CCCEEEECCCCcCHHHHHHHHHHhCCcCC---CCeEEEECCCCCh
Confidence 4556667777777766554332 25699999999999999999988654222 5688999998743
Q ss_pred CchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc
Q 001808 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE 699 (1010)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~ 699 (1010)
... +. .+|.. ......++|||||++.|- ......+++++.+.. +..
T Consensus 204 ~~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~~~q~~l~~~l~~~~--~~~ 264 (445)
T TIGR02915 204 NLL---ES---ELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP-----------LNLQAKLLRFLQERV--IER 264 (445)
T ss_pred HHH---HH---HhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC-----------HHHHHHHHHHHhhCe--EEe
Confidence 211 11 11110 111345799999999983 222334444333211 000
Q ss_pred ccCCccCCCcEEEEEecCCc-------cccChhhhcCCccc-ccccCCCCcH--HHHHHHHHHHhhh----cc---cccC
Q 001808 700 KRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRFD-FHVQLPAPAA--SERKAILEHEIQR----RS---LECS 762 (1010)
Q Consensus 700 ~~~~~~~~~~v~vIattn~~-------~~L~~~L~r~gRf~-~~i~l~~P~~--~eR~~IL~~~l~~----~~---~~~~ 762 (1010)
.+.......++.+|++++.. ..+.+.|.. |+. ..|++|+... ++...++++++.+ .+ ..++
T Consensus 265 ~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~ 342 (445)
T TIGR02915 265 LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFT 342 (445)
T ss_pred CCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 00000011257888887653 123343433 332 2345554432 2333345555443 12 3478
Q ss_pred hHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 763 DEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 763 ~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
++.+..+..+.--.+.++|++++++++..
T Consensus 343 ~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 343 DDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 88899888887666889999999988753
No 330
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.40 E-value=1.7e-06 Score=99.95 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=86.3
Q ss_pred CCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC---------CcEEEEecchh
Q 001808 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS---------LRFISVKGPEL 914 (1010)
Q Consensus 844 ~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g---------~~~i~v~~~el 914 (1010)
+++.|-++..+.+...+.-... + ..+.+++++||||||||++++.++..+. ..++.+++.+.
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 3567777777677666542111 1 2245799999999999999999997652 46777776543
Q ss_pred hh----------hhh--cc-------c-HHHHHHHHHHHh-cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhc
Q 001808 915 LN----------KYI--GA-------S-EQAVRDIFSKAT-AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1010)
Q Consensus 915 ~~----------~~i--g~-------s-e~~l~~lf~~A~-~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ld 973 (1010)
.+ ... |. + .+....++.... ...+.||+|||+|.+... .+.++.+|+...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~--------~~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD--------DDDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC--------CcHHHHhHhcccc
Confidence 21 111 11 1 223445555543 345789999999999721 1235666665532
Q ss_pred Cccc-cCcEEEEEeCCC----------CcCCcc-eEEEecCCCc
Q 001808 974 GVEV-LTGVFVFAATRL----------EFFHYN-VLLFCSFIIF 1005 (1010)
Q Consensus 974 g~e~-~~~v~viatTn~----------r~gR~d-~~l~~~~p~~ 1005 (1010)
-.+. ..++.+|+++|. ...||. ..+.|++++.
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~ 201 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDA 201 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCH
Confidence 1121 246777888876 123443 4566666554
No 331
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.40 E-value=2.4e-06 Score=86.89 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=76.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcce-----------------eeeEEEEeccccc-CCchhhHHHHHHHHHHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDL-----------------VAHIVFVCCSRLS-LEKGPIIRQALSNFISEA 651 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~-----------------~~~~~~i~~s~l~-~~~~~~~~~~l~~~f~~a 651 (1010)
+..+||+||+|+||+++|+++|+.+-..... ...+..++...-. .-..+.++.....+....
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~ 98 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP 98 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHH
Confidence 4569999999999999999999988532211 1334455444331 123344443322222222
Q ss_pred HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCc
Q 001808 652 LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGR 731 (1010)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gR 731 (1010)
......|++|||+|.+- ....+.|+..+++... ++.+|.+++.++.+.+.+++ |
T Consensus 99 ~~~~~KviiI~~ad~l~---------------~~a~NaLLK~LEepp~---------~~~fiL~t~~~~~il~TI~S--R 152 (162)
T PF13177_consen 99 SEGKYKVIIIDEADKLT---------------EEAQNALLKTLEEPPE---------NTYFILITNNPSKILPTIRS--R 152 (162)
T ss_dssp TTSSSEEEEEETGGGS----------------HHHHHHHHHHHHSTTT---------TEEEEEEES-GGGS-HHHHT--T
T ss_pred hcCCceEEEeehHhhhh---------------HHHHHHHHHHhcCCCC---------CEEEEEEECChHHChHHHHh--h
Confidence 23356699999999984 2555667777777653 48899999999999999999 6
Q ss_pred ccccccCCC
Q 001808 732 FDFHVQLPA 740 (1010)
Q Consensus 732 f~~~i~l~~ 740 (1010)
.. .+.+++
T Consensus 153 c~-~i~~~~ 160 (162)
T PF13177_consen 153 CQ-VIRFRP 160 (162)
T ss_dssp SE-EEEE--
T ss_pred ce-EEecCC
Confidence 65 455544
No 332
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=4.7e-06 Score=94.40 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=122.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1010)
.+.|.+..+..+.+.+...+. ..-++.+.+.|.||+|||.+...+...+..... ....++++|..+..
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle-----------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~-~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLE-----------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK-SPVTVYINCTSLTE 218 (529)
T ss_pred CccchHHHHHHHHHHHHhhhh-----------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcc-cceeEEEeeccccc
Confidence 455677777777777766544 344577999999999999999877766643222 13568999987543
Q ss_pred Cc--hhhH-------------HHHHHHHHHHH-Hhc-CCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh
Q 001808 635 EK--GPII-------------RQALSNFISEA-LDH-APSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY 697 (1010)
Q Consensus 635 ~~--~~~~-------------~~~l~~~f~~a-~~~-~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~ 697 (1010)
.. +..+ .......|..- ... .+-++++||+|.|..... ..+..+..+ ..+
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~lFew-p~l 285 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTLFEW-PKL 285 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeeehhc-ccC
Confidence 21 1110 01111112211 111 366899999999973111 122222221 222
Q ss_pred ccccCCccCCCcEEEEEecCCccccChhhhc----CCcccccccCCCCcHHHHHHHHHHHhhhcccc-cChHHHHhHhhh
Q 001808 698 GEKRKSSCGIGPIAFVASAQSLEKIPQSLTS----SGRFDFHVQLPAPAASERKAILEHEIQRRSLE-CSDEILLDVASK 772 (1010)
Q Consensus 698 ~~~~~~~~~~~~v~vIattn~~~~L~~~L~r----~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~-~~~~~l~~la~~ 772 (1010)
.. ..+++|+.+|..+.-+..|.+ .+.-...+.|++++.++..+||+..+...... +-+..++.+|+.
T Consensus 286 p~--------sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArK 357 (529)
T KOG2227|consen 286 PN--------SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARK 357 (529)
T ss_pred Cc--------ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 21 148899999987754433332 12334567999999999999999887764433 334568888888
Q ss_pred cCCCChhhHHHH---HHHHHHHH
Q 001808 773 CDGYDAYDLEIL---VDRTVHAA 792 (1010)
Q Consensus 773 t~g~s~~DL~~L---v~~A~~~a 792 (1010)
..|.+| |++.+ |++|+..+
T Consensus 358 vaa~SG-DlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 358 VAAPSG-DLRKALDVCRRAIEIA 379 (529)
T ss_pred hccCch-hHHHHHHHHHHHHHHH
Confidence 888776 66544 44554433
No 333
>PRK08181 transposase; Validated
Probab=98.37 E-value=4.8e-07 Score=99.15 Aligned_cols=99 Identities=23% Similarity=0.375 Sum_probs=65.7
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcc-cHHHHHHHHHHHhcCCCeEEEEeCCCccCCCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~-se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R 953 (1010)
+.+++|+||+|||||+||.++|..+ |..++.++.++++..+... .+.....++... ..+.+|+|||++.....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~- 182 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD- 182 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC-
Confidence 4689999999999999999999754 7788889999988765322 112233455443 35679999999887432
Q ss_pred CCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
......+-+++.... + +--+|.|||.
T Consensus 183 -----~~~~~~Lf~lin~R~--~---~~s~IiTSN~ 208 (269)
T PRK08181 183 -----QAETSVLFELISARY--E---RRSILITANQ 208 (269)
T ss_pred -----HHHHHHHHHHHHHHH--h---CCCEEEEcCC
Confidence 122334444444332 1 2357778888
No 334
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.36 E-value=5.7e-06 Score=98.94 Aligned_cols=200 Identities=15% Similarity=0.130 Sum_probs=121.3
Q ss_pred cccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc
Q 001808 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS 633 (1010)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~ 633 (1010)
..+.|....+.++.+.+..+... ..+++|+|++|||||++|+++....... ...++.++|..+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~-------------~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~i~i~c~~~~ 201 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRS-------------SISVLINGESGTGKELVAHALHRHSPRA---KAPFIALNMAAIP 201 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhcc-------------CCeEEEEeCCCCcHHHHHHHHHhcCCCC---CCCeEeeeCCCCC
Confidence 35667777888887777554432 3569999999999999999998865322 2678999998874
Q ss_pred CCchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001808 634 LEKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1010)
Q Consensus 634 ~~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1010)
... ++ ..+|.. ......+.|||||++.|- . .+...|.+.++...
T Consensus 202 ~~~---~~---~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~-----------~----~~q~~L~~~l~~~~ 260 (469)
T PRK10923 202 KDL---IE---SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP-----------L----DVQTRLLRVLADGQ 260 (469)
T ss_pred HHH---HH---HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC-----------H----HHHHHHHHHHhcCc
Confidence 321 11 111211 011235689999999883 1 23333444444321
Q ss_pred --cccCCccCCCcEEEEEecCCc-------cccChhhhcCCcc-cccccCCCCcH--HHHHHHHHHHhhh----cc---c
Q 001808 699 --EKRKSSCGIGPIAFVASAQSL-------EKIPQSLTSSGRF-DFHVQLPAPAA--SERKAILEHEIQR----RS---L 759 (1010)
Q Consensus 699 --~~~~~~~~~~~v~vIattn~~-------~~L~~~L~r~gRf-~~~i~l~~P~~--~eR~~IL~~~l~~----~~---~ 759 (1010)
..+.......++.+|++++.. ..+.+.|.. |+ ...+.+|+... ++...++++++.. .+ .
T Consensus 261 ~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~ 338 (469)
T PRK10923 261 FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAK 338 (469)
T ss_pred EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 100000011257888888652 124445554 55 34456666543 4455566666543 22 2
Q ss_pred ccChHHHHhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
.++++.+..|..+.--.+.++|++++++++..+
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 378888888888876678899999999887543
No 335
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.36 E-value=2.3e-06 Score=92.03 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=64.9
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCC
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R 953 (1010)
...+++|+||+|||||++|++++... +..++.+++.++... +. ......+++|||+|.+.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~-- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD-- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc--
Confidence 34689999999999999999999875 667888887665421 11 122456999999998732
Q ss_pred CCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCCCc----------CCc--ceEEEecCCCc
Q 001808 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRLEF----------FHY--NVLLFCSFIIF 1005 (1010)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~r~----------gR~--d~~l~~~~p~~ 1005 (1010)
.....|+..++.....+..+++.|++..| .|| ...+.++.|+.
T Consensus 105 ---------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~ 159 (227)
T PRK08903 105 ---------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSD 159 (227)
T ss_pred ---------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCH
Confidence 12334455554333334433444444311 155 35667777664
No 336
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.36 E-value=3.4e-06 Score=101.78 Aligned_cols=78 Identities=21% Similarity=0.160 Sum_probs=49.5
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh--------------hh--------c------c
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--------------YI--------G------A 921 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~--------------~i--------g------~ 921 (1010)
.++..+..++++|+||+|||+++..++... |.+.+.+...+-... +. . .
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCC
Confidence 356778889999999999999997776433 667666654322110 00 0 0
Q ss_pred cHHHHHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 922 SEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 922 se~~l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
.+..+..+.+.....++.+++||-+..+.
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 01223334444455678899999988775
No 337
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=2.2e-06 Score=101.84 Aligned_cols=119 Identities=20% Similarity=0.275 Sum_probs=81.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+++.+...+... +.+..+||+||+|+|||++|+++|+.+..
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 67999999999999998887522 23345799999999999999999988731
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
.++.+++..- ..-..++++...+.. +...|++|||+|.+ +....+.||..|
T Consensus 79 ~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t~~A~NALLK~L 141 (535)
T PRK08451 79 SALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------TKEAFNALLKTL 141 (535)
T ss_pred HHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------CHHHHHHHHHHH
Confidence 2333332110 112457777665432 23469999999988 456789999999
Q ss_pred cCccccCcEEEEEeCCC
Q 001808 973 DGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v~viatTn~ 989 (1010)
.... ..-++|++|++.
T Consensus 142 EEpp-~~t~FIL~ttd~ 157 (535)
T PRK08451 142 EEPP-SYVKFILATTDP 157 (535)
T ss_pred hhcC-CceEEEEEECCh
Confidence 7431 234456666554
No 338
>PRK09183 transposase/IS protein; Provisional
Probab=98.35 E-value=6.5e-07 Score=98.09 Aligned_cols=106 Identities=23% Similarity=0.345 Sum_probs=68.2
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcc-cHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA-SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~-se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.+.+++|+||||||||+||.++|... |..+..++..++...+... ....+..+|+.. ...+++++|||++.....
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~~ 179 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPFS 179 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCCC
Confidence 45789999999999999999998664 7778888888887554322 112345566654 346779999999876432
Q ss_pred CCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCCCcCCc
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRLEFFHY 994 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~r~gR~ 994 (1010)
....+.|+..++.-... + -+|.|||..++.+
T Consensus 180 ---------~~~~~~lf~li~~r~~~-~-s~iiTsn~~~~~w 210 (259)
T PRK09183 180 ---------QEEANLFFQVIAKRYEK-G-SMILTSNLPFGQW 210 (259)
T ss_pred ---------hHHHHHHHHHHHHHHhc-C-cEEEecCCCHHHH
Confidence 12233444444421112 2 3677888844443
No 339
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=2.6e-06 Score=91.13 Aligned_cols=164 Identities=23% Similarity=0.333 Sum_probs=86.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc-C----------------------------------
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS-L---------------------------------- 634 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~-~---------------------------------- 634 (1010)
...++|+||.|+|||+|++.+.+.+.... ...+++++.... .
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~---~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKG---YKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--E---ECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcC---CcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 36799999999999999999999874221 112222211100 0
Q ss_pred CchhhHHHHHHHHHHHHHhc-CCeEEEEccchhhh-cCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEE
Q 001808 635 EKGPIIRQALSNFISEALDH-APSIVIFDNLDSII-SSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAF 712 (1010)
Q Consensus 635 ~~~~~~~~~l~~~f~~a~~~-~PsIL~IDEiD~L~-~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~v 712 (1010)
.........+..++...... ...+|+|||++.+. . .. ....+...|...++...... ++.+
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~--~~--------~~~~~~~~l~~~~~~~~~~~-------~~~~ 159 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIA--SE--------EDKDFLKSLRSLLDSLLSQQ-------NVSI 159 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBC--TT--------TTHHHHHHHHHHHHH----T-------TEEE
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhc--cc--------chHHHHHHHHHHHhhccccC-------CceE
Confidence 00112223344444444332 34799999999996 2 11 11255556666666533221 3445
Q ss_pred EEecCCcccc------ChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhccccc--ChHHHHhHhhhcCCCC
Q 001808 713 VASAQSLEKI------PQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLEC--SDEILLDVASKCDGYD 777 (1010)
Q Consensus 713 Iattn~~~~L------~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~--~~~~l~~la~~t~g~s 777 (1010)
|.++...... ...+. +|+.. +.+++.+.++..++++..+... ..+ +++.++.+...+.|..
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred EEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 4444432211 11222 26665 9999999999999999887765 444 8888999999998854
No 340
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.35 E-value=8.2e-07 Score=109.24 Aligned_cols=135 Identities=17% Similarity=0.224 Sum_probs=87.2
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc--------------------
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------------------- 902 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~-------------------- 902 (1010)
|..|.|++.++..+.-....+ ..+++||.|++|||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 567889999887775444321 12579999999999999999999988
Q ss_pred ---------------CCcEEEEecchhhhhhhccc--HHHH--------HHHHHHHhcCCCeEEEEeCCCccCCCCCCCC
Q 001808 903 ---------------SLRFISVKGPELLNKYIGAS--EQAV--------RDIFSKATAAAPCLLFFDEFDSIAPKRGHDN 957 (1010)
Q Consensus 903 ---------------g~~~i~v~~~el~~~~ig~s--e~~l--------~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~ 957 (1010)
..+|+.+...-.-...+|.- +..+ ..++..|. ..+|||||++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~---~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAH---RGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecC---CCeEEeChhhhC--------
Confidence 23555544332222233321 1111 11222222 249999999998
Q ss_pred CcchHHHHHHHHHHhcCc----cc-------cCcEEEEEeCCC--------CcCCcceEEEecCCC
Q 001808 958 TGVTDRVVNQFLTELDGV----EV-------LTGVFVFAATRL--------EFFHYNVLLFCSFII 1004 (1010)
Q Consensus 958 ~~~~~rv~~~lL~~ldg~----e~-------~~~v~viatTn~--------r~gR~d~~l~~~~p~ 1004 (1010)
...+.+.||..|+.- +. ..++.+|||+|. ...||+.++.++.|.
T Consensus 139 ---~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~ 201 (633)
T TIGR02442 139 ---DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPR 201 (633)
T ss_pred ---CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCC
Confidence 456889999999621 11 135899999997 235777777766553
No 341
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.3e-05 Score=90.06 Aligned_cols=155 Identities=20% Similarity=0.238 Sum_probs=93.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCccee---------------eeEEEE--ecccccCC-chhhHHHHHHHHHHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLV---------------AHIVFV--CCSRLSLE-KGPIIRQALSNFISEA 651 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~---------------~~~~~i--~~s~l~~~-~~~~~~~~l~~~f~~a 651 (1010)
+..+||+||+|+||+++|.++|+.+-...... ..+..+ ..+.-..+ .....-..++++.+.+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 35699999999999999999999874321000 012222 11110000 0001112233333333
Q ss_pred H----hcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhh
Q 001808 652 L----DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLT 727 (1010)
Q Consensus 652 ~----~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~ 727 (1010)
. ...-.|++||++|.+- ..-.+.|+..+++... ++.+|.+++.++.+.|.++
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEPp~---------~~~fiL~~~~~~~lLpTIr 161 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAIN---------------RAACNALLKTLEEPSP---------GRYLWLISAQPARLPATIR 161 (319)
T ss_pred hhCcccCCcEEEEeccHhhhC---------------HHHHHHHHHHhhCCCC---------CCeEEEEECChhhCchHHH
Confidence 2 2234599999999984 1334456666666443 4678888888889999999
Q ss_pred cCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCC
Q 001808 728 SSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1010)
Q Consensus 728 r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s 777 (1010)
+ |.. .+.+++|+.++..+.|.. .+ +++.....++..+.|-.
T Consensus 162 S--RCq-~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p 202 (319)
T PRK08769 162 S--RCQ-RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHP 202 (319)
T ss_pred h--hhe-EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCH
Confidence 9 776 788999999887777753 22 34444445566666643
No 342
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.34 E-value=1.2e-06 Score=105.51 Aligned_cols=106 Identities=24% Similarity=0.409 Sum_probs=69.6
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc----------CCcEEEEe
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----------SLRFISVK 910 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~----------g~~~i~v~ 910 (1010)
..|+++.|.+...+.+...+.. ..+.++||+||||||||++|++++..+ +.+|+.++
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 5688899998888777754321 124689999999999999999998753 35788888
Q ss_pred cchh-------hhhhhcccH----------------HHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHH
Q 001808 911 GPEL-------LNKYIGASE----------------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQ 967 (1010)
Q Consensus 911 ~~el-------~~~~ig~se----------------~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~ 967 (1010)
+... ....+|... +.-...+.+|. ..+|||||++.+. ....+.
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~---gG~L~IdEI~~L~-----------~~~q~~ 194 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAH---GGVLFIDEIGELH-----------PVQMNK 194 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccC---CcEEEEechhhCC-----------HHHHHH
Confidence 7531 111111100 00011233333 3599999999984 457788
Q ss_pred HHHHhc
Q 001808 968 FLTELD 973 (1010)
Q Consensus 968 lL~~ld 973 (1010)
||..|+
T Consensus 195 LL~~Le 200 (531)
T TIGR02902 195 LLKVLE 200 (531)
T ss_pred HHHHHH
Confidence 888775
No 343
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.34 E-value=2.3e-06 Score=99.96 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=67.2
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhh----------hhhhc-------cc-HHHHHHHHHHHh
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELL----------NKYIG-------AS-EQAVRDIFSKAT 934 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~----------~~~ig-------~s-e~~l~~lf~~A~ 934 (1010)
+.+++++||||||||++++.++..+ +..++.+++.... ....+ .+ +.....+++...
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 134 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD 134 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999876 4678888875432 22222 11 222333333333
Q ss_pred -cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 935 -AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 935 -~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
...+.||+|||+|.+. ++. ...++..|+..++.... .++.+|+++|.
T Consensus 135 ~~~~~~viviDE~d~l~-~~~------~~~~l~~l~~~~~~~~~-~~v~vI~i~~~ 182 (394)
T PRK00411 135 ERDRVLIVALDDINYLF-EKE------GNDVLYSLLRAHEEYPG-ARIGVIGISSD 182 (394)
T ss_pred hcCCEEEEEECCHhHhh-ccC------CchHHHHHHHhhhccCC-CeEEEEEEECC
Confidence 2456899999999997 211 12467777777764432 26777777775
No 344
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.33 E-value=7.9e-07 Score=100.47 Aligned_cols=138 Identities=19% Similarity=0.242 Sum_probs=88.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC-------CcEEEE-ecc
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISV-KGP 912 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g-------~~~i~v-~~~ 912 (1010)
-.+.++.|++++|..|.-.+..| ..+++||.|++|||||++|++++..+. .+|... +.+
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p 80 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDP 80 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCCh
Confidence 46889999999999887665533 126899999999999999999988873 122200 000
Q ss_pred hh-----hhhh-------------------hcccHHH------HHHH------------HHHHhcCCCeEEEEeCCCccC
Q 001808 913 EL-----LNKY-------------------IGASEQA------VRDI------------FSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 913 el-----~~~~-------------------ig~se~~------l~~l------------f~~A~~~~p~VLfiDEid~l~ 950 (1010)
+. .+.. .|.++.. +... +.+|. ..+||+||++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~---~GiL~lDEInrL~ 157 (350)
T CHL00081 81 ELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKAN---RGILYVDEVNLLD 157 (350)
T ss_pred hhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecC---CCEEEecChHhCC
Confidence 10 0000 1122221 1112 22222 2499999999984
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCc----c-------ccCcEEEEEeCCC--------CcCCcceEEEecCCCc
Q 001808 951 PKRGHDNTGVTDRVVNQFLTELDGV----E-------VLTGVFVFAATRL--------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 951 ~~R~~~~~~~~~rv~~~lL~~ldg~----e-------~~~~v~viatTn~--------r~gR~d~~l~~~~p~~ 1005 (1010)
..+.+.||..|+.- + ...+++++||.|. ...||..++.++.|..
T Consensus 158 -----------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~ 220 (350)
T CHL00081 158 -----------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKD 220 (350)
T ss_pred -----------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCC
Confidence 55788899988631 1 1246889999987 3358888888887763
No 345
>PRK06893 DNA replication initiation factor; Validated
Probab=98.33 E-value=1.4e-06 Score=93.77 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=42.6
Q ss_pred eEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 880 NVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 880 ~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.++|+||||||||+|+.++|+++ +.....++..+... ....+++.. ....+|+|||++.+.+.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~--~~~dlLilDDi~~~~~~ 106 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENL--EQQDLVCLDDLQAVIGN 106 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhc--ccCCEEEEeChhhhcCC
Confidence 57999999999999999999886 34555555432111 112333333 24579999999998643
No 346
>PRK06526 transposase; Provisional
Probab=98.32 E-value=4.8e-07 Score=98.62 Aligned_cols=102 Identities=21% Similarity=0.280 Sum_probs=63.1
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhccc-HHHHHHHHHHHhcCCCeEEEEeCCCccCCCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~s-e~~l~~lf~~A~~~~p~VLfiDEid~l~~~R 953 (1010)
+.+++|+||||||||++|.+++..+ |..+..++..+++....... ...+...+... ..+.+|+|||++.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~- 174 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE- 174 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC-
Confidence 4689999999999999999998875 67777777777776543211 11222333332 34679999999987422
Q ss_pred CCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCCCcC
Q 001808 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRLEFF 992 (1010)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~r~g 992 (1010)
......+-+++.... + ...+|.|||..++
T Consensus 175 -----~~~~~~L~~li~~r~--~---~~s~IitSn~~~~ 203 (254)
T PRK06526 175 -----PEAANLFFQLVSSRY--E---RASLIVTSNKPFG 203 (254)
T ss_pred -----HHHHHHHHHHHHHHH--h---cCCEEEEcCCCHH
Confidence 112233344443332 2 2247778888333
No 347
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.32 E-value=1.4e-05 Score=90.10 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=42.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhcc
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEH 616 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~ 616 (1010)
++.|++++++++.+.+....... ......++|+|||||||||+|++|++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~---------~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGL---------EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcC---------CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999886644210 123466899999999999999999999863
No 348
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=2.3e-06 Score=83.40 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=71.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
+.++|+||.||||||+++.+++.+.. ...+.++++.+.......... +.+.+.+.....+.+|||||++.+-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~----~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~-- 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLP----PENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP-- 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcc----cccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc--
Confidence 45899999999999999999988751 156788888876543211111 2233333222367899999998872
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcccc----ChhhhcCCcccccccCCCCcHHH
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI----PQSLTSSGRFDFHVQLPAPAASE 745 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L----~~~L~r~gRf~~~i~l~~P~~~e 745 (1010)
.+...+..+.+... ++.++.|+.....+ ...+. ||+. .+++.|.+..|
T Consensus 75 --------------~~~~~lk~l~d~~~----------~~~ii~tgS~~~~l~~~~~~~l~--gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 75 --------------DWEDALKFLVDNGP----------NIKIILTGSSSSLLSKDIAESLA--GRVI-EIELYPLSFRE 126 (128)
T ss_pred --------------cHHHHHHHHHHhcc----------CceEEEEccchHHHhhcccccCC--CeEE-EEEECCCCHHH
Confidence 23333444444321 24555555443333 22232 3665 67777777665
No 349
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.31 E-value=6.6e-07 Score=106.88 Aligned_cols=136 Identities=24% Similarity=0.288 Sum_probs=92.3
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHH-----------cCCcEEEEe
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAA-----------CSLRFISVK 910 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~-----------~g~~~i~v~ 910 (1010)
.++++.|.....+.+.+.+... -+...++|++|++||||+++|+++... .+.+|+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~-----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY-----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 4667888777666666665422 123468999999999999999999887 357899999
Q ss_pred cchhhhh-----hhc--------ccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc
Q 001808 911 GPELLNK-----YIG--------ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV 977 (1010)
Q Consensus 911 ~~el~~~-----~ig--------~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~ 977 (1010)
+..+-.. ..| +....-..+|+.|.++ .|||||++.+. ..+...||..|+.-+-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGG---TLFLDEIGEMP-----------LPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCC---EEEEcChHhCC-----------HHHHHHHHhhhhcCeE
Confidence 8765321 112 1111122467776555 99999999984 4577788888863211
Q ss_pred ---------cCcEEEEEeCCC------CcCCcceEEEecC
Q 001808 978 ---------LTGVFVFAATRL------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 978 ---------~~~v~viatTn~------r~gR~d~~l~~~~ 1002 (1010)
.-.+-||+|||+ ..|+|...+|+.+
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL 391 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL 391 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh
Confidence 114679999988 5678887666544
No 350
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.31 E-value=3.7e-06 Score=101.90 Aligned_cols=106 Identities=18% Similarity=0.264 Sum_probs=68.1
Q ss_pred EEEeCCCCCChHHHHHHHHHHc----------CCcEEEEecchhhhh----------hhc-------ccHHHHHHHHHHH
Q 001808 881 VLLYGPPGCGKTHIVGAAAAAC----------SLRFISVKGPELLNK----------YIG-------ASEQAVRDIFSKA 933 (1010)
Q Consensus 881 iLL~GppGtGKT~lAk~lA~~~----------g~~~i~v~~~el~~~----------~ig-------~se~~l~~lf~~A 933 (1010)
++++|+||||||++++.+...+ ...++.+++..+... ..| .+...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 4699999999999999998765 256788888543221 101 1224466677665
Q ss_pred h--cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC--CcCCcce
Q 001808 934 T--AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL--EFFHYNV 996 (1010)
Q Consensus 934 ~--~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~--r~gR~d~ 996 (1010)
. ....+||+|||||.+..+ .+.++-.|+.+.. .....+.||+.+|. .+.|++.
T Consensus 864 ~k~~r~v~IIILDEID~L~kK--------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdP 920 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITK--------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIP 920 (1164)
T ss_pred hcccccceEEEeehHhhhCcc--------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhh
Confidence 2 234579999999999743 2345555555443 23456889999987 4445443
No 351
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=3.3e-06 Score=102.99 Aligned_cols=119 Identities=21% Similarity=0.352 Sum_probs=83.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
..|+++.|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+.+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 57999999999999998887621 23345899999999999999999998642
Q ss_pred ---------cEEEEecchhhhhhhcccHHHHHHHHHHHhcC----CCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHH
Q 001808 905 ---------RFISVKGPELLNKYIGASEQAVRDIFSKATAA----APCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTE 971 (1010)
Q Consensus 905 ---------~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~----~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ 971 (1010)
+++.+++.+ ...-..++.+...+... ...|++|||+|.+ +....+.||..
T Consensus 82 ~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L-----------s~~a~naLLK~ 144 (614)
T PRK14971 82 VAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHML-----------SQAAFNAFLKT 144 (614)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccC-----------CHHHHHHHHHH
Confidence 333333321 11234577777666433 3569999999998 34568899999
Q ss_pred hcCccccCcEEEEEeCCC
Q 001808 972 LDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 972 ldg~e~~~~v~viatTn~ 989 (1010)
|+... ..-++|++||++
T Consensus 145 LEepp-~~tifIL~tt~~ 161 (614)
T PRK14971 145 LEEPP-SYAIFILATTEK 161 (614)
T ss_pred HhCCC-CCeEEEEEeCCc
Confidence 97322 234555666655
No 352
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.31 E-value=8e-07 Score=100.76 Aligned_cols=112 Identities=20% Similarity=0.239 Sum_probs=77.1
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh-----hhccc-------HHHHHHHHHHHhcCCCeEEE
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGAS-------EQAVRDIFSKATAAAPCLLF 942 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~-----~ig~s-------e~~l~~lf~~A~~~~p~VLf 942 (1010)
..++||+|++||||+++|+++.... +.+|+.+++..+... ..|.. ...-..+|..|.++ +||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG---tL~ 98 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGG---TLF 98 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCC---EEE
Confidence 5689999999999999999998776 468999998754321 11111 01112345665544 999
Q ss_pred EeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc---------cCcEEEEEeCCC------CcCCcceEEEecCC
Q 001808 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATRL------EFFHYNVLLFCSFI 1003 (1010)
Q Consensus 943 iDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~---------~~~v~viatTn~------r~gR~d~~l~~~~p 1003 (1010)
|||++.+. ..+...|+..|+.-.. ..++-||+||+. ..|+|...+|+.+.
T Consensus 99 Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~ 163 (329)
T TIGR02974 99 LDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLA 163 (329)
T ss_pred eCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhc
Confidence 99999984 4577888888863221 135789999988 45788766665553
No 353
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.30 E-value=1.5e-06 Score=102.13 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=52.6
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~ 951 (1010)
..+++||||+|+|||+|++++|..+ +..++.++..++...+.......-...|.... ...++|+|||++.+.+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSG 216 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcC
Confidence 3579999999999999999999876 68888998887766544332211122344332 3567999999999853
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=4.6e-06 Score=94.40 Aligned_cols=136 Identities=19% Similarity=0.237 Sum_probs=87.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcc---e----------------eeeEEEEeccccc-----------------
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD---L----------------VAHIVFVCCSRLS----------------- 633 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~---~----------------~~~~~~i~~s~l~----------------- 633 (1010)
+..+||+||+|+||+++|+++|+.+..... . -..+.++......
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 467999999999999999999999854210 0 0112223221100
Q ss_pred ----------CCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCC
Q 001808 634 ----------LEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS 703 (1010)
Q Consensus 634 ----------~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~ 703 (1010)
.-..+.++.....+-.........|++||++|.+-. .-.+.|+..+++-..
T Consensus 101 ~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~---------------~AaNaLLKtLEEPp~---- 161 (342)
T PRK06964 101 GGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV---------------AAANALLKTLEEPPP---- 161 (342)
T ss_pred ccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH---------------HHHHHHHHHhcCCCc----
Confidence 112233333332222222223445999999999841 334445555555332
Q ss_pred ccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHH
Q 001808 704 SCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1010)
Q Consensus 704 ~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~ 752 (1010)
++++|.+|++++.+.|.++| |.. .+.+++|+.++..+.|..
T Consensus 162 -----~t~fiL~t~~~~~LLpTI~S--Rcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 162 -----GTVFLLVSARIDRLLPTILS--RCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -----CcEEEEEECChhhCcHHHHh--cCE-EEEecCCCHHHHHHHHHH
Confidence 48899999999999999999 775 789999999998888865
No 355
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.30 E-value=1.5e-06 Score=103.16 Aligned_cols=119 Identities=20% Similarity=0.281 Sum_probs=72.0
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC----CcEEEEec------
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVKG------ 911 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g----~~~i~v~~------ 911 (1010)
.+.++.|+..+++.+.-.+ ..+.+++|+||||||||++|+.++..+. ..++....
T Consensus 190 d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 5677888877766554322 2346899999999999999999997651 11111111
Q ss_pred ------------------chhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhc
Q 001808 912 ------------------PELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELD 973 (1010)
Q Consensus 912 ------------------~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ld 973 (1010)
+......+|.....-...+..|.. .+|||||++.+ ...+.+.|++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~-----------~~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF-----------KRSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC-----------CHHHHHHHHHHHH
Confidence 000001111111011123444444 49999999887 4568888888886
Q ss_pred Ccc-----------ccCcEEEEEeCCC
Q 001808 974 GVE-----------VLTGVFVFAATRL 989 (1010)
Q Consensus 974 g~e-----------~~~~v~viatTn~ 989 (1010)
.-. ...++.+|||+|.
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Np 347 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNP 347 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCC
Confidence 321 1136889999997
No 356
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.29 E-value=1.5e-06 Score=98.18 Aligned_cols=136 Identities=17% Similarity=0.198 Sum_probs=85.7
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc-------CCcEE--------
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-------SLRFI-------- 907 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~-------g~~~i-------- 907 (1010)
+..|.|+++++..+.-.+..| ..++++|.|++|+|||+++++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 567889999998875544322 24689999999999999999999887 22221
Q ss_pred -----EE--e-------------cchhhh-----hhhcccH--HH--------HHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 908 -----SV--K-------------GPELLN-----KYIGASE--QA--------VRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 908 -----~v--~-------------~~el~~-----~~ig~se--~~--------l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.. . ..++-. .++|... .. -..++.+|.. .+||+||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~---GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANR---GILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccC---CEEEecChHhC---
Confidence 00 0 011100 1222211 00 1123333333 39999999998
Q ss_pred CCCCCCcchHHHHHHHHHHhcCcc-----------ccCcEEEEEeCCC--------CcCCcceEEEecCCCc
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATRL--------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e-----------~~~~v~viatTn~--------r~gR~d~~l~~~~p~~ 1005 (1010)
...+.+.|+..|+.-. ...+++++||+|. ...||..++.++.|.-
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~ 207 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRD 207 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCC
Confidence 3568888999986311 1136899999987 2348888888887753
No 357
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.28 E-value=1e-06 Score=102.14 Aligned_cols=139 Identities=21% Similarity=0.266 Sum_probs=99.8
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchh----
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPEL---- 914 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el---- 914 (1010)
...++.|....-+.+.+.+... -.....+|+.|.+||||..+|+++.... +.+|+.+||..+
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 3456667666666666665522 1234689999999999999999999988 469999998544
Q ss_pred -----hh----hhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--ccC----
Q 001808 915 -----LN----KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VLT---- 979 (1010)
Q Consensus 915 -----~~----~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~~~---- 979 (1010)
++ .|.|+.... ...|+.|.++ .||+|||..+. -.+..-||..|+.-+ ..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r-~G~fE~A~GG---TLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 208 LESELFGHEKGAFTGAITRR-IGRFEQANGG---TLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHhhcccccCcCCccccc-CcceeEcCCc---eEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCCcc
Confidence 22 123333222 3577877777 99999999884 457788999987322 111
Q ss_pred ---cEEEEEeCCC------CcCCcceEEEecCCCcc
Q 001808 980 ---GVFVFAATRL------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 980 ---~v~viatTn~------r~gR~d~~l~~~~p~~~ 1006 (1010)
.|-||||||+ .-|||-..||+.+-...
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~ 308 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVP 308 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccce
Confidence 5889999999 88999999998876544
No 358
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.27 E-value=1e-06 Score=105.41 Aligned_cols=139 Identities=23% Similarity=0.331 Sum_probs=93.3
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~ 917 (1010)
..++++.|.....+.+.+.+... .+...++|+.|++||||+++|+++.... +.+|+.+++..+-..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 45677888777666666665422 1224689999999999999999999775 578999998654321
Q ss_pred -----hhc--------ccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc-----c-
Q 001808 918 -----YIG--------ASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-----L- 978 (1010)
Q Consensus 918 -----~ig--------~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~-----~- 978 (1010)
..| +....-..+|+.|.++ .|||||++.+. ..+...|+..|+.-+- .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~gG---TLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHRG---TLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCCc---eEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCc
Confidence 112 1111123466666555 99999999984 4577788888863221 0
Q ss_pred ---CcEEEEEeCCC------CcCCcceEEEecCCC
Q 001808 979 ---TGVFVFAATRL------EFFHYNVLLFCSFII 1004 (1010)
Q Consensus 979 ---~~v~viatTn~------r~gR~d~~l~~~~p~ 1004 (1010)
-++-||+||++ ..|+|...+|+.+..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~ 378 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSI 378 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcCC
Confidence 14578999988 567888766655443
No 359
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.27 E-value=1.3e-06 Score=105.28 Aligned_cols=138 Identities=23% Similarity=0.284 Sum_probs=91.3
Q ss_pred CCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh---
Q 001808 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--- 917 (1010)
Q Consensus 844 ~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~--- 917 (1010)
.++.|.....+.+.+.+... .....++||+|++||||+++|+++.... +.+|+.+++..+-..
T Consensus 187 ~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e 255 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAE 255 (509)
T ss_pred CceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHH
Confidence 44556555555555555422 1234689999999999999999999886 478999998765321
Q ss_pred --hhcccH-------HHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc---------cC
Q 001808 918 --YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LT 979 (1010)
Q Consensus 918 --~ig~se-------~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~---------~~ 979 (1010)
..|... ......|..|.++ .|||||+|.+. ..+...|+..|+.-.- .-
T Consensus 256 ~~lfG~~~g~~~ga~~~~~g~~~~a~gG---tL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 321 (509)
T PRK05022 256 SELFGHVKGAFTGAISNRSGKFELADGG---TLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLRV 321 (509)
T ss_pred HHhcCccccccCCCcccCCcchhhcCCC---EEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCcceec
Confidence 112110 0112245555444 89999999984 4577788888863221 12
Q ss_pred cEEEEEeCCC------CcCCcceEEEecCCCcc
Q 001808 980 GVFVFAATRL------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 980 ~v~viatTn~------r~gR~d~~l~~~~p~~~ 1006 (1010)
++-||+||++ ..|+|...+|+.+..+.
T Consensus 322 ~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~ 354 (509)
T PRK05022 322 DVRVIAATNRDLREEVRAGRFRADLYHRLSVFP 354 (509)
T ss_pred ceEEEEecCCCHHHHHHcCCccHHHHhcccccE
Confidence 5789999998 56888887776665543
No 360
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.26 E-value=1.5e-06 Score=85.87 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=57.3
Q ss_pred cchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCch
Q 001808 558 WMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG 637 (1010)
Q Consensus 558 g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~ 637 (1010)
|....++++.+.+..+.... .+|||+|++||||+++|+++...-... ...++.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~a~~~-------------~pvli~GE~GtGK~~~A~~lh~~~~~~---~~~~~~~~~~~~~---- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSS-------------SPVLITGEPGTGKSLLARALHRYSGRA---NGPFIVIDCASLP---- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSS-------------S-EEEECCTTSSHHHHHHCCHHTTTTC---CS-CCCCCHHCTC----
T ss_pred CCCHHHHHHHHHHHHHhCCC-------------CcEEEEcCCCCCHHHHHHHHHhhcCcc---CCCeEEechhhCc----
Confidence 55677888888887776543 679999999999999999998865422 1445556777644
Q ss_pred hhHHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001808 638 PIIRQALSNFISEALDHAPSIVIFDNLDSII 668 (1010)
Q Consensus 638 ~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1010)
.++++.+ .+..|||+|+|.|-
T Consensus 62 -------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 62 -------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp -------HHHHHHC---TTSEEEEECGCCS-
T ss_pred -------HHHHHHc---CCCEEEECChHHCC
Confidence 2344443 66799999999983
No 361
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.26 E-value=5.5e-06 Score=93.67 Aligned_cols=117 Identities=20% Similarity=0.325 Sum_probs=73.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC-----CcEEEEecchhh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-----LRFISVKGPELL 915 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g-----~~~i~v~~~el~ 915 (1010)
..|+++.|.+++.+.+...+... ...+++|+||+|||||+++++++..+. ..++.++.++..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 57888999999999888877521 112689999999999999999999873 335555443321
Q ss_pred hhhhcccHHHHHHHHHH-Hhc-----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCC
Q 001808 916 NKYIGASEQAVRDIFSK-ATA-----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATR 988 (1010)
Q Consensus 916 ~~~ig~se~~l~~lf~~-A~~-----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn 988 (1010)
+ ...++..+.. +.. ..+.+++|||+|.+. ....+.|+..|+.... ...+|+++++
T Consensus 81 ~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~~~L~~~le~~~~-~~~lIl~~~~ 141 (319)
T PRK00440 81 G------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQQALRRTMEMYSQ-NTRFILSCNY 141 (319)
T ss_pred c------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHHHHHHHHHhcCCC-CCeEEEEeCC
Confidence 1 1112222211 111 235699999999884 2245667777764332 2344444433
No 362
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.26 E-value=3.3e-06 Score=91.30 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=68.2
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcc---cHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~---se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.+++|+|+||||||+||.++|..+ |..++.++.++++..+.+. .......+++.. ...++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCCC--
Confidence 489999999999999999999987 7788889999988654332 112233455543 256799999998863
Q ss_pred CCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
.+.+...++.+++..- ..++.-+|.|||.
T Consensus 176 ----~s~~~~~~l~~Ii~~R----y~~~~~tiitSNl 204 (244)
T PRK07952 176 ----ESRYEKVIINQIVDRR----SSSKRPTGMLTNS 204 (244)
T ss_pred ----CCHHHHHHHHHHHHHH----HhCCCCEEEeCCC
Confidence 2334445555555442 2234567778887
No 363
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.25 E-value=5.8e-06 Score=93.41 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=59.0
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhh----ccccCCccCCCcEEEEEecCCcc-ccChhhhcCC
Q 001808 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEY----GEKRKSSCGIGPIAFVASAQSLE-KIPQSLTSSG 730 (1010)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~----~~~~~~~~~~~~v~vIattn~~~-~L~~~L~r~g 730 (1010)
..||++||++.|- .++...|++.+..- ...+-.......+++|+|+|+.+ .|-+.|+.
T Consensus 145 RGIlYvDEvnlL~---------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD-- 207 (423)
T COG1239 145 RGILYVDEVNLLD---------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD-- 207 (423)
T ss_pred CCEEEEecccccc---------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--
Confidence 4599999998873 26666666665542 11111122234789999999864 57788888
Q ss_pred cccccccCCCC-cHHHHHHHHHHHhhh
Q 001808 731 RFDFHVQLPAP-AASERKAILEHEIQR 756 (1010)
Q Consensus 731 Rf~~~i~l~~P-~~~eR~~IL~~~l~~ 756 (1010)
||...+.+..| +.++|.+|.+..+..
T Consensus 208 Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 208 RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 99999988766 678999999876653
No 364
>PF05729 NACHT: NACHT domain
Probab=98.25 E-value=6.9e-06 Score=82.96 Aligned_cols=145 Identities=16% Similarity=0.223 Sum_probs=80.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhccCccee---eeEEEEecccccCCchh-hHHHHHHHH-----------H-HHHHhcC
Q 001808 592 HILIHGPPGSGKTSLAKAVAKSLEHHKDLV---AHIVFVCCSRLSLEKGP-IIRQALSNF-----------I-SEALDHA 655 (1010)
Q Consensus 592 ~VLL~GppGtGKTtLaraLA~~L~~~~~~~---~~~~~i~~s~l~~~~~~-~~~~~l~~~-----------f-~~a~~~~ 655 (1010)
-++|+|++|+|||++++.++..+....... ..++++.+......... .+...+... + .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 389999999999999999999886443221 34556666555432211 222222111 1 1112245
Q ss_pred CeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccc--cChhhhcCCccc
Q 001808 656 PSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEK--IPQSLTSSGRFD 733 (1010)
Q Consensus 656 PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~--L~~~L~r~gRf~ 733 (1010)
+.+++||.+|.+...... .....+...|.+++..... ..+.++.++.+... +...+.. .
T Consensus 82 ~~llilDglDE~~~~~~~-------~~~~~~~~~l~~l~~~~~~--------~~~~liit~r~~~~~~~~~~~~~---~- 142 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-------QERQRLLDLLSQLLPQALP--------PGVKLIITSRPRAFPDLRRRLKQ---A- 142 (166)
T ss_pred ceEEEEechHhcccchhh-------hHHHHHHHHHHHHhhhccC--------CCCeEEEEEcCChHHHHHHhcCC---C-
Confidence 568999999998631110 1122344445455443111 12455555544322 2222222 1
Q ss_pred ccccCCCCcHHHHHHHHHHHhh
Q 001808 734 FHVQLPAPAASERKAILEHEIQ 755 (1010)
Q Consensus 734 ~~i~l~~P~~~eR~~IL~~~l~ 755 (1010)
..+.+++.+.+++.++++.+++
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhh
Confidence 3578999999999999988765
No 365
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.25 E-value=1.7e-06 Score=103.40 Aligned_cols=73 Identities=25% Similarity=0.418 Sum_probs=55.1
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
..++|||++|||||+|+.++|..+ +..+++++..++.+.|+..........|.+- -...++|+|||++.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC
Confidence 359999999999999999999976 5678999999988777654333333334432 234689999999998743
No 366
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.25 E-value=1e-06 Score=109.19 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=90.1
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhh--
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLN-- 916 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~-- 916 (1010)
.++++.|.+..-+.+.+.+... .+...++||+|++||||+++|+++.... +.+|+.+++..+-.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA-----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 4566666555444444443321 1234579999999999999999999876 46899999865421
Q ss_pred ---hhhcc----cHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc--cC-------c
Q 001808 917 ---KYIGA----SEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV--LT-------G 980 (1010)
Q Consensus 917 ---~~ig~----se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~--~~-------~ 980 (1010)
.+.|. ........|+.|. ..+|||||++.+. ..+...|+..|+.-.- .+ +
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a~---~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 457 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELAH---GGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPVD 457 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeECC---CCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEee
Confidence 12221 1111112344443 3499999999984 4567778888863211 11 5
Q ss_pred EEEEEeCCC------CcCCcceEEEecCCCcc
Q 001808 981 VFVFAATRL------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 981 v~viatTn~------r~gR~d~~l~~~~p~~~ 1006 (1010)
+-||+||++ ..|+|...+|+.+....
T Consensus 458 ~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~ 489 (638)
T PRK11388 458 VRVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 (638)
T ss_pred EEEEEeccCCHHHHHhcCCChHHHhhhhceeE
Confidence 789999998 56888887777665543
No 367
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.24 E-value=2.4e-06 Score=103.71 Aligned_cols=139 Identities=23% Similarity=0.261 Sum_probs=90.2
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhh
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY 918 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ 918 (1010)
..+++.|....-+.+.+.+.... ....++||+|++||||+++|+++.... +.+|+.+++..+....
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence 45566776666666655554221 235689999999999999999999886 5689999997653211
Q ss_pred -----hcccH-------HHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--cc------
Q 001808 919 -----IGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL------ 978 (1010)
Q Consensus 919 -----ig~se-------~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~~------ 978 (1010)
.|... ......|..|. ..+|||||++.+. ..+...|+..|+.-. ..
T Consensus 263 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~ 328 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIAQRKGRFELAD---GGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRTL 328 (534)
T ss_pred HHHHHcCCCCCccCCCCcCCCCcccccC---CCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCceE
Confidence 11110 00011234443 3499999999984 457788888886321 11
Q ss_pred -CcEEEEEeCCC------CcCCcceEEEecCCCc
Q 001808 979 -TGVFVFAATRL------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 979 -~~v~viatTn~------r~gR~d~~l~~~~p~~ 1005 (1010)
-.+-+|+||+. ..|+|...+|+.+...
T Consensus 329 ~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~ 362 (534)
T TIGR01817 329 KVDVRLVAATNRDLEEAVAKGEFRADLYYRINVV 362 (534)
T ss_pred eecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCC
Confidence 14788998888 5678877666555443
No 368
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=6.1e-06 Score=93.29 Aligned_cols=119 Identities=22% Similarity=0.320 Sum_probs=79.7
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC--------cEEEEecch
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL--------RFISVKGPE 913 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~--------~~i~v~~~e 913 (1010)
.|+++.|++.+++.+...+.. -+.+..+||+||.|+|||++|+.+|+.+-. +++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 478899999999998888752 133456799999999999999999997622 233332211
Q ss_pred hhhhhhcccHHHHHHHHHHH----hcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 914 LLNKYIGASEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 914 l~~~~ig~se~~l~~lf~~A----~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
++.+ .-..+|++.+.+ ..+...|++|||+|.+ +....|.||..|+ |..+++++|.+|+.
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~~~a~naLLK~LE--epp~~t~~il~~~~ 132 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------TEQAQNAFLKTIE--EPPKGVFIILLCEN 132 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCCCeEEEEEeCC
Confidence 1111 123466666643 3345679999999887 4567899999998 44555555444443
No 369
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.24 E-value=6.5e-06 Score=93.24 Aligned_cols=95 Identities=25% Similarity=0.336 Sum_probs=71.7
Q ss_pred eEEEeCCCCCChHHHHHHHHHHcC------------------------CcEEEEecchhhhhhhcccHHHHHHHHHHHhc
Q 001808 880 NVLLYGPPGCGKTHIVGAAAAACS------------------------LRFISVKGPELLNKYIGASEQAVRDIFSKATA 935 (1010)
Q Consensus 880 ~iLL~GppGtGKT~lAk~lA~~~g------------------------~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~ 935 (1010)
.+||+||||+|||++|.++|+.+. .+++.++.++....- -....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 499999999999999999999986 578888887754421 123345555444322
Q ss_pred ----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 936 ----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 936 ----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
++..|++|||+|.+ +....|.++.-|. +...+.++|.+||.
T Consensus 104 ~~~~~~~kviiidead~m-----------t~~A~nallk~lE--ep~~~~~~il~~n~ 148 (325)
T COG0470 104 SPLEGGYKVVIIDEADKL-----------TEDAANALLKTLE--EPPKNTRFILITND 148 (325)
T ss_pred CCCCCCceEEEeCcHHHH-----------hHHHHHHHHHHhc--cCCCCeEEEEEcCC
Confidence 35679999999998 3467899999997 66777888888885
No 370
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.24 E-value=7.5e-06 Score=85.37 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHcCCc------------------------EEEEecchhhhhhhcccHHHHHHHHHH
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAACSLR------------------------FISVKGPELLNKYIGASEQAVRDIFSK 932 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~g~~------------------------~i~v~~~el~~~~ig~se~~l~~lf~~ 932 (1010)
.+..+||+||+|+|||++|+.+|+.+... +..+.... . .-.-..++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34579999999999999999999886321 22221110 0 0122456666666
Q ss_pred Hhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC------CcCCcceEEEecC
Q 001808 933 ATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 933 A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------r~gR~d~~l~~~~ 1002 (1010)
+.. +...|++|||+|.+. ....+.||..|+.. ..+.++|+.|++. ...|. ..+.|..
T Consensus 88 ~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~-~~~~~~il~~~~~~~l~~~i~sr~-~~~~~~~ 154 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP-PPNTLFILITPSPEKLLPTIRSRC-QVLPFPP 154 (188)
T ss_pred HccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC-CCCeEEEEEECChHhChHHHHhhc-EEeeCCC
Confidence 644 345799999999983 44678899999742 2234455555443 12233 3566665
Q ss_pred CCc
Q 001808 1003 IIF 1005 (1010)
Q Consensus 1003 p~~ 1005 (1010)
|+.
T Consensus 155 ~~~ 157 (188)
T TIGR00678 155 LSE 157 (188)
T ss_pred CCH
Confidence 543
No 371
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=8.5e-06 Score=92.06 Aligned_cols=136 Identities=20% Similarity=0.276 Sum_probs=85.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcc-------------------eeeeEEEEecccc---cC-----CchhhHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD-------------------LVAHIVFVCCSRL---SL-----EKGPIIRQ 642 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~-------------------~~~~~~~i~~s~l---~~-----~~~~~~~~ 642 (1010)
+..+||+||+|+|||++|+.+|+.+..... .-..+.+++...- .+ -..+.++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 456999999999999999999999852110 0022444544211 11 12344444
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCcccc
Q 001808 643 ALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKI 722 (1010)
Q Consensus 643 ~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L 722 (1010)
....+..........|+++|+++.+- . ...+.|...+++... .+.+|.+++.++.+
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~----~a~naLLk~LEep~~---------~~~~Ilvth~~~~l 156 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMN-----------L----QAANSLLKVLEEPPP---------QVVFLLVSHAADKV 156 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCC-----------H----HHHHHHHHHHHhCcC---------CCEEEEEeCChHhC
Confidence 33333222223345699999998873 1 333445555555432 25677788888889
Q ss_pred ChhhhcCCcccccccCCCCcHHHHHHHHHH
Q 001808 723 PQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1010)
Q Consensus 723 ~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~ 752 (1010)
.+.+.+ |.. .+.|++|+.++..+.|..
T Consensus 157 l~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 157 LPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 988888 665 788999999987777753
No 372
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.8e-05 Score=96.20 Aligned_cols=138 Identities=15% Similarity=0.170 Sum_probs=88.2
Q ss_pred cccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc--
Q 001808 554 SSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR-- 631 (1010)
Q Consensus 554 ~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~-- 631 (1010)
..++|.+.++..|-+.+...-... .+ -.+...+||.||.|+|||-||+++|..+.... ..++.+|++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl-----~~--~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL-----KD--PNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEFQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc-----CC--CCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhhh
Confidence 467888888888888775533211 00 03556799999999999999999999985333 5678888885
Q ss_pred ----ccCC---chhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--cccC
Q 001808 632 ----LSLE---KGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG--EKRK 702 (1010)
Q Consensus 632 ----l~~~---~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~--~~~~ 702 (1010)
+.+. +.+.. ....+........-+|++|||+|.--+ .+...|..++|... +..+
T Consensus 632 evskligsp~gyvG~e--~gg~LteavrrrP~sVVLfdeIEkAh~---------------~v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 632 EVSKLIGSPPGYVGKE--EGGQLTEAVKRRPYSVVLFEEIEKAHP---------------DVLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred hhhhccCCCcccccch--hHHHHHHHHhcCCceEEEEechhhcCH---------------HHHHHHHHHHhcCccccCCC
Confidence 3222 12221 122233333334457999999988531 45555666666543 2222
Q ss_pred CccCCCcEEEEEecCC
Q 001808 703 SSCGIGPIAFVASAQS 718 (1010)
Q Consensus 703 ~~~~~~~v~vIattn~ 718 (1010)
...+.++++||+|+|.
T Consensus 695 r~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNV 710 (898)
T ss_pred cEeeccceEEEEeccc
Confidence 3445668999999876
No 373
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=7.1e-06 Score=94.07 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=81.2
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcE-------------
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF------------- 906 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~------------- 906 (1010)
+..+++|.|++.+++.+...+... +.+..+||+||+|+||+++|.++|+.+-..-
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 467899999999999999887632 3345699999999999999999998762100
Q ss_pred EEEe-------------cchhhhhh---hcc--------cHHHHHHHHHHH----hcCCCeEEEEeCCCccCCCCCCCCC
Q 001808 907 ISVK-------------GPELLNKY---IGA--------SEQAVRDIFSKA----TAAAPCLLFFDEFDSIAPKRGHDNT 958 (1010)
Q Consensus 907 i~v~-------------~~el~~~~---ig~--------se~~l~~lf~~A----~~~~p~VLfiDEid~l~~~R~~~~~ 958 (1010)
..+. .+++.--. .+. .-..+|++-+.+ ..+.+.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 0000 01111000 010 113456655543 3356789999999987
Q ss_pred cchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 959 GVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 959 ~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
.....|.||+.|. +...++++|.+|+.
T Consensus 154 --~~~aanaLLK~LE--epp~~~~~IL~t~~ 180 (365)
T PRK07471 154 --NANAANALLKVLE--EPPARSLFLLVSHA 180 (365)
T ss_pred --CHHHHHHHHHHHh--cCCCCeEEEEEECC
Confidence 4568899999997 44444444444444
No 374
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.22 E-value=3.3e-06 Score=105.49 Aligned_cols=135 Identities=23% Similarity=0.302 Sum_probs=90.0
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh-
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK- 917 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~- 917 (1010)
.++++.|.....+.+.+.+.... ....++|++|++|||||++|+++.... +.+|+.+++..+...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~ 442 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGL 442 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhH
Confidence 45567777766666665555321 234689999999999999999999876 578999998765321
Q ss_pred ----h--------hcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc--------
Q 001808 918 ----Y--------IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV-------- 977 (1010)
Q Consensus 918 ----~--------ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~-------- 977 (1010)
. .|..... ...|..|.+ .+|||||++.+. ..+...|+..|+.-+.
T Consensus 443 ~~~~lfg~~~~~~~g~~~~~-~g~le~a~~---GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 443 LESDLFGHERGAFTGASAQR-IGRFELADK---SSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred hhhhhcCcccccccccccch-hhHHHhcCC---CeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 1 1211112 234555544 499999999984 4577788888863221
Q ss_pred -cCcEEEEEeCCC------CcCCcceEEEecC
Q 001808 978 -LTGVFVFAATRL------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 978 -~~~v~viatTn~------r~gR~d~~l~~~~ 1002 (1010)
..++-||+||++ ..|+|...+|+.+
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l 539 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYYRL 539 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHhcc
Confidence 135789999988 4567777555443
No 375
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.22 E-value=1.7e-05 Score=94.54 Aligned_cols=197 Identities=15% Similarity=0.186 Sum_probs=113.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1010)
.+.|....+.++.+.+..+.... .++|++|++||||+++|+++....... ...++.++|..+..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~~-------------~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~~~i~c~~~~~ 207 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALSQ-------------ASVLISGESGTGKELIARAIHYNSRRA---KGPFIKVNCAALPE 207 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCCC-------------cEEEEEcCCCccHHHHHHHHHHhCCCC---CCCeEEEECCCCCH
Confidence 35556667777777766654432 569999999999999999998754322 25789999998753
Q ss_pred CchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-
Q 001808 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1010)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1010)
... + ..+|.. ......++|||||++.+- . .+...|...++...
T Consensus 208 ~~~---~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~-----------~----~~q~~L~~~l~~~~~ 266 (457)
T PRK11361 208 SLL---E---SELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMP-----------L----VLQAKLLRILQEREF 266 (457)
T ss_pred HHH---H---HHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCC-----------H----HHHHHHHHHHhcCcE
Confidence 211 1 111111 011234699999999984 1 22333444433211
Q ss_pred -cccCCccCCCcEEEEEecCCcc-------ccChhhhcCCcccccccCCCCcHHHH----HHHHHHHhhhc----c---c
Q 001808 699 -EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQRR----S---L 759 (1010)
Q Consensus 699 -~~~~~~~~~~~v~vIattn~~~-------~L~~~L~r~gRf~~~i~l~~P~~~eR----~~IL~~~l~~~----~---~ 759 (1010)
..........++.+|++++..- .+.+.+.. |+. .+.+..|...+| ..+..+++.+. + .
T Consensus 267 ~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 267 ERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred EeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 1000011112578888887531 12232222 222 234444444443 33444444431 1 3
Q ss_pred ccChHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 760 ECSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 760 ~~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
.++++.+..+..+.--.+.++|++++++++..
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 47888888888877666889999999887743
No 376
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.22 E-value=9.7e-06 Score=96.76 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=119.4
Q ss_pred ccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccC
Q 001808 555 SLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSL 634 (1010)
Q Consensus 555 ~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~ 634 (1010)
.+.|....+.++.+.+..+... ..++++.|.+||||+++++++....... ...++.++|..+..
T Consensus 135 ~lig~s~~~~~v~~~i~~~a~~-------------~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~~~c~~~~~ 198 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLSRS-------------DITVLINGESGTGKELVARALHRHSPRA---NGPFIALNMAAIPK 198 (463)
T ss_pred ceeecCHHHHHHHHHHHHHhCc-------------CCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEEEeCCCCCH
Confidence 3566677777777777554432 2569999999999999999998865322 26788999998743
Q ss_pred CchhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc-
Q 001808 635 EKGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG- 698 (1010)
Q Consensus 635 ~~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~- 698 (1010)
... +.. +|.. .....++.|||||++.|- ......+++ .++...
T Consensus 199 ~~~---~~~---lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~-----------~~~q~~ll~----~l~~~~~ 257 (463)
T TIGR01818 199 DLI---ESE---LFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP-----------LDAQTRLLR----VLADGEF 257 (463)
T ss_pred HHH---HHH---hcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC-----------HHHHHHHHH----HHhcCcE
Confidence 221 111 1110 111235789999999883 122234433 333211
Q ss_pred -cccCCccCCCcEEEEEecCCcc-------ccChhhhcCCccc-ccccCCCCc--HHHHHHHHHHHhhhc----c---cc
Q 001808 699 -EKRKSSCGIGPIAFVASAQSLE-------KIPQSLTSSGRFD-FHVQLPAPA--ASERKAILEHEIQRR----S---LE 760 (1010)
Q Consensus 699 -~~~~~~~~~~~v~vIattn~~~-------~L~~~L~r~gRf~-~~i~l~~P~--~~eR~~IL~~~l~~~----~---~~ 760 (1010)
..+.......++.+|++++..- .+.+.|.. |+. ..+++|+.. .++...++++++... + ..
T Consensus 258 ~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 335 (463)
T TIGR01818 258 YRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKL 335 (463)
T ss_pred EECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 0000000112467888876421 23333333 443 356777766 456666666665432 2 34
Q ss_pred cChHHHHhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 761 ~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
++++.+..|..+.--.+.++|++++++++..+
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 78888888888765557899999999887544
No 377
>PRK12377 putative replication protein; Provisional
Probab=98.22 E-value=4.2e-06 Score=90.68 Aligned_cols=100 Identities=21% Similarity=0.230 Sum_probs=63.9
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhccc--HHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS--EQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~s--e~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
..+++|+||||||||+||.++|..+ |..++.++.++++..+-... ......+++.. ....+|+|||++....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~- 177 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE- 177 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-
Confidence 3589999999999999999999887 67788888888876432211 01122344433 4567999999977532
Q ss_pred CCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
+.+... .|...++. ......-+|.|||.
T Consensus 178 -----s~~~~~---~l~~ii~~-R~~~~~ptiitSNl 205 (248)
T PRK12377 178 -----TKNEQV---VLNQIIDR-RTASMRSVGMLTNL 205 (248)
T ss_pred -----CHHHHH---HHHHHHHH-HHhcCCCEEEEcCC
Confidence 223333 44444441 11223455777887
No 378
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.22 E-value=1.2e-06 Score=91.11 Aligned_cols=25 Identities=48% Similarity=0.865 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
.|+||+||||||||++|+.+...|.
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCC
Confidence 6899999999999999999998774
No 379
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=8.8e-06 Score=92.84 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=87.3
Q ss_pred CCCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc------EEEEe---
Q 001808 840 RSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR------FISVK--- 910 (1010)
Q Consensus 840 ~~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~------~i~v~--- 910 (1010)
+..++++.|++++.+.+...+... +.+..+||+||+|+|||++|+.+|+.+... .....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 467899999999999999887632 334569999999999999999999887431 00000
Q ss_pred -------------cchhh---hhh-h--c--cc---HHHHHHHHHH----HhcCCCeEEEEeCCCccCCCCCCCCCcchH
Q 001808 911 -------------GPELL---NKY-I--G--AS---EQAVRDIFSK----ATAAAPCLLFFDEFDSIAPKRGHDNTGVTD 962 (1010)
Q Consensus 911 -------------~~el~---~~~-i--g--~s---e~~l~~lf~~----A~~~~p~VLfiDEid~l~~~R~~~~~~~~~ 962 (1010)
.++++ ... . | .. -..+|.+-+. +..+...|++|||+|.+ ..
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~~ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------NR 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------CH
Confidence 01111 000 0 0 00 1234444333 23456679999999998 35
Q ss_pred HHHHHHHHHhcCccccCcEEEEEeCCC------CcCCcceEEEecCCCc
Q 001808 963 RVVNQFLTELDGVEVLTGVFVFAATRL------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 963 rv~~~lL~~ldg~e~~~~v~viatTn~------r~gR~d~~l~~~~p~~ 1005 (1010)
...|.||+.|+... .+.++|+.|++. ...|. ..+.+++++.
T Consensus 156 ~aanaLLk~LEEpp-~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~ 202 (351)
T PRK09112 156 NAANAILKTLEEPP-ARALFILISHSSGRLLPTIRSRC-QPISLKPLDD 202 (351)
T ss_pred HHHHHHHHHHhcCC-CCceEEEEECChhhccHHHHhhc-cEEEecCCCH
Confidence 57889999997422 344555555554 22344 4666665554
No 380
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.21 E-value=2.6e-06 Score=92.94 Aligned_cols=110 Identities=20% Similarity=0.341 Sum_probs=68.5
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHH-HHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQ-AVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~-~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.+.+++|+||||+|||+||.|+|..+ |..++.+..++++...-..... ....-+.+. -....+|+|||+...-
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~-- 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP-- 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc--
Confidence 46799999999999999999999887 7889999999998764332211 111111110 1244699999998763
Q ss_pred CCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCCCcCCcceEE
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRLEFFHYNVLL 998 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~r~gR~d~~l 998 (1010)
. +....+.+.+.++..-..... +.|||..++.++.++
T Consensus 181 ----~---~~~~~~~~~q~I~~r~~~~~~--~~tsN~~~~~~~~~~ 217 (254)
T COG1484 181 ----F---SQEEADLLFQLISRRYESRSL--IITSNLSFGEWDELF 217 (254)
T ss_pred ----C---CHHHHHHHHHHHHHHHhhccc--eeecCCChHHHHhhc
Confidence 1 222333444444321222222 888888555544443
No 381
>PF03152 UFD1: Ubiquitin fusion degradation protein UFD1; InterPro: IPR004854 Post-translational ubiquitin-protein conjugates are recognised for degradation by the ubiquitin fusion degradation (UFD) pathway. Several proteins involved in this pathway have been identified []. This family includes UFD1, a 40kDa protein that is essential for vegetative cell viability []. The human UFD1 gene is expressed at high levels during embryogenesis, especially in the eyes and in the inner ear primordia and is thought to be important in the determination of ectoderm-derived structures, including neural crest cells. In addition, this gene is deleted in the CATCH-22 (cardiac defects, abnormal facies, thymic hypoplasia, cleft palate and hypocalcaemia with deletions on chromosome 22) syndrome. This clinical syndrome is associated with a variety of developmental defects, all characterised by microdeletions on 22q11.2. Two such developmental defects are the DiGeorge syndrome OMIM:188400, and the velo-cardio- facial syndrome OMIM:145410. Several of the abnormalities associated with these conditions are thought to be due to defective neural crest cell differentiation []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1ZC1_A 2YUJ_A.
Probab=98.21 E-value=1.7e-05 Score=80.53 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=111.2
Q ss_pred cceeeCCHHHHHHHhhccccCCCCceEEEEEEeC-CCCeEEEEecCCcCCCCceeecHHHHhhcCCCCCCEEEEEEeecC
Q 001808 13 NCFVSLPLKLIETLESTRSAHLLPQVLSLELRSR-SNQRWVVAWSGATSSSSFIEVARQFAECISLADHTIVQVRVVSNV 91 (1010)
Q Consensus 13 ~~~v~lp~~l~~~l~~~~~~~~~~q~~~~e~~~~-~~~~~~~~w~g~~s~~~~iei~~~~a~~~gl~~~~~v~~~~~~~~ 91 (1010)
+.=|-||++..+.|.+.+.. .-...+|+.. .++..|+|=-..++..+.|-+.+-+.+.|||++|+.|.|+ ..+.
T Consensus 25 gdKiiLP~s~L~~L~~~~~~----~P~~F~i~n~~~~~~th~GVlEFsA~eG~i~lP~wmm~~L~l~~g~~V~v~-~~~L 99 (176)
T PF03152_consen 25 GDKIILPPSALDELSRLNIP----YPMLFEISNPDNGKRTHCGVLEFSAEEGTIYLPPWMMQNLGLQEGDIVRVE-YVSL 99 (176)
T ss_dssp TTEEEE-HHHHHHHHHTT------SS-EEEEEETTTTEEEEEEEEEE--CTTEEEE-CHHHHHHT--TTEEEEEE-EEE-
T ss_pred CCeEEcCHHHHHHHHhccCC----CCEEEEEecCCCCcEEEEEEEEeEcCCCeEEeCccHHhhcCCCCCCEEEEE-EeEC
Confidence 34578999999999986542 3467788765 4467999977777777899999999999999999999999 5799
Q ss_pred ccceEEEeecCCcchhHHHHhcHHHHHHHHhcccceecCCCEEeEEecCceEEEEEEeccCCCCCeeEecCCCEEEEcc
Q 001808 92 LKATLVTIEPLTEDDWEVLELNSEHAEAAILNQVRIVHEAMRFPLWLHGRTIITFHVVSTFPKKPVVQLVPGTEVAVAP 170 (1010)
Q Consensus 92 ~~~~~v~veP~t~dDwEi~e~~a~~~e~~lL~Q~r~v~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~l~~~tev~vap 170 (1010)
|.++.|.+.|.+.+=.+ |+-+-..||.+| .+--+++.|.++.+.- ++..-.|.|..+.|+..+..+..|-||=++|
T Consensus 100 Pkgt~vkLqP~~~~F~~-i~n~KavLE~~L-r~ystLT~Gd~I~i~~-~~~~y~l~V~e~kP~~aV~IidTDl~vDf~~ 175 (176)
T PF03152_consen 100 PKGTFVKLQPQSSDFLD-ISNPKAVLERAL-RNYSTLTKGDTISIEY-NNKTYELDVVEVKPENAVSIIDTDLEVDFEP 175 (176)
T ss_dssp ---SEEEEEESCHHHHC-SS-HHHHHHHHH-CC-SEEETTSEEEEEC-TTEEEEEEEEEECSSSCEE-SSS-SEEEE--
T ss_pred CCCCEEEEeECCCcccc-ccchHHHHHhhc-ccCceeecCCEEEEEe-CCEEEEEEEEEEcCCCEEEEEeCceEEEecC
Confidence 99999999999875344 556667799999 8899999999999996 5667799999999999888999999887765
No 382
>PF13173 AAA_14: AAA domain
Probab=98.20 E-value=7.5e-06 Score=79.85 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=48.5
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHcC--CcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCcc
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~g--~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l 949 (1010)
..++++||.|||||++++.++..+. .+++.++..+.........+ +.+.+.+.....+.++||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 4689999999999999999998876 77888887765442111111 333343332236679999999887
No 383
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.19 E-value=8.5e-07 Score=87.69 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=71.8
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCC---cEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSL---RFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRG 954 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~---~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~ 954 (1010)
...+||+|++||||+++|+++....+. +|+.+++.++- .++++.+. ...|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a~---~gtL~l~~i~~L~---- 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQAK---GGTLYLKNIDRLS---- 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHCT---TSEEEEECGCCS-----
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHcC---CCEEEECChHHCC----
Confidence 468999999999999999999998754 45555544321 45677764 4499999999994
Q ss_pred CCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC------CcCCcceEEEecCCCcce
Q 001808 955 HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL------EFFHYNVLLFCSFIIFLI 1007 (1010)
Q Consensus 955 ~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~------r~gR~d~~l~~~~p~~~~ 1007 (1010)
......|+..|+..+ ..++-+|++++. ..|+|+..+|+.+....+
T Consensus 83 -------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i 133 (138)
T PF14532_consen 83 -------PEAQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEI 133 (138)
T ss_dssp -------HHHHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEE
T ss_pred -------HHHHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEE
Confidence 445666777776433 445666677666 457788877777665543
No 384
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.19 E-value=1.8e-05 Score=96.73 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=61.6
Q ss_pred cEEEEEecCCc--cccChhhhcCCccc---ccccCC---CCcHHHHHHHHHHH---hhhc--ccccChHHHHhHhhhcC-
Q 001808 709 PIAFVASAQSL--EKIPQSLTSSGRFD---FHVQLP---APAASERKAILEHE---IQRR--SLECSDEILLDVASKCD- 774 (1010)
Q Consensus 709 ~v~vIattn~~--~~L~~~L~r~gRf~---~~i~l~---~P~~~eR~~IL~~~---l~~~--~~~~~~~~l~~la~~t~- 774 (1010)
++.+|++++.. ..+++.|.. ||. ..+.++ +.+.+.|.++.+.+ +++. ...++++.+..+.+...
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57889998874 568999988 887 444443 33456665555433 3333 23467777666553211
Q ss_pred --C------CChhhHHHHHHHHHHHHHHhhcccCCcccccccCcccccchhhhhhc
Q 001808 775 --G------YDAYDLEILVDRTVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHE 822 (1010)
Q Consensus 775 --g------~s~~DL~~Lv~~A~~~a~~r~~~~~~~~~~~~~~~lt~eDf~~Al~~ 822 (1010)
| ...+++..+++.|...|..+ ....++.+|+.+|++.
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKAKKL 390 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHHHHH
Confidence 1 23578888988875433222 2346888888887654
No 385
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.18 E-value=1.6e-06 Score=89.55 Aligned_cols=100 Identities=20% Similarity=0.366 Sum_probs=61.6
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhccc-HHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGAS-EQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~s-e~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.+.+++|+||+|||||+||.++|.++ |..+..++.++++..+-... .......+.... ...+|+|||+....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~-- 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP-- 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS---
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee--
Confidence 35689999999999999999999776 88899999999987643221 112334444443 34699999997542
Q ss_pred CCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
.++...+.|...++.-.. ++ -+|.|||.
T Consensus 122 -------~~~~~~~~l~~ii~~R~~-~~-~tIiTSN~ 149 (178)
T PF01695_consen 122 -------LSEWEAELLFEIIDERYE-RK-PTIITSNL 149 (178)
T ss_dssp ---------HHHHHCTHHHHHHHHH-T--EEEEEESS
T ss_pred -------ecccccccchhhhhHhhc-cc-CeEeeCCC
Confidence 122334445555542122 22 45558888
No 386
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.18 E-value=2.8e-06 Score=96.36 Aligned_cols=134 Identities=22% Similarity=0.234 Sum_probs=85.1
Q ss_pred CCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh---
Q 001808 844 DDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK--- 917 (1010)
Q Consensus 844 ~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~--- 917 (1010)
+++.|....-+.+.+.+... .....++|++|++||||+++|+++.... +.+|+.+++..+-..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred CccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 44556555555555444422 1235689999999999999999998776 468999998765321
Q ss_pred --hhcccH-------HHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--cc-------C
Q 001808 918 --YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL-------T 979 (1010)
Q Consensus 918 --~ig~se-------~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~~-------~ 979 (1010)
+.|... ......|..|.++ .|||||++.+. ..+...|+..|+... .. -
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a~gG---tL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~~ 140 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERADGG---TLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQV 140 (326)
T ss_pred HHHccccccccCCcccccCCchhccCCC---eEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 112110 0112345555444 99999999984 457777888886322 11 2
Q ss_pred cEEEEEeCCC------CcCCcceEEEecC
Q 001808 980 GVFVFAATRL------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 980 ~v~viatTn~------r~gR~d~~l~~~~ 1002 (1010)
.+.||+||+. .-|+|...+|+.+
T Consensus 141 ~~RiI~~s~~~l~~l~~~g~f~~dL~~~l 169 (326)
T PRK11608 141 NVRLVCATNADLPAMVAEGKFRADLLDRL 169 (326)
T ss_pred cEEEEEeCchhHHHHHHcCCchHHHHHhc
Confidence 4889999988 3467755555444
No 387
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=3e-05 Score=86.97 Aligned_cols=155 Identities=13% Similarity=0.185 Sum_probs=97.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcce----------------
Q 001808 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDL---------------- 620 (1010)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~---------------- 620 (1010)
+|.....+.+.+.+.. ...+..+||+||.|+||+++|+++|+.+-.....
T Consensus 6 PWl~~~~~~l~~~~~~--------------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g 71 (319)
T PRK06090 6 PWLVPVWQNWKAGLDA--------------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSG 71 (319)
T ss_pred ccHHHHHHHHHHHHHc--------------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcC
Confidence 4666666666554422 1223569999999999999999999988432110
Q ss_pred -eeeEEEEecccc-cCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001808 621 -VAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1010)
Q Consensus 621 -~~~~~~i~~s~l-~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1010)
-..+..+....- ..-..+.++.....+..........|++||++|.+- ..-.+.|+..+++-.
T Consensus 72 ~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~---------------~~AaNaLLKtLEEPp 136 (319)
T PRK06090 72 NHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN---------------ESASNALLKTLEEPA 136 (319)
T ss_pred CCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhC---------------HHHHHHHHHHhcCCC
Confidence 011333332210 112334444433222222223344699999999984 133445656666543
Q ss_pred cccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHH
Q 001808 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEH 752 (1010)
Q Consensus 699 ~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~ 752 (1010)
. ++.+|..++.++.+.|.++| |.. .+.+++|+.++..+.+..
T Consensus 137 ~---------~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 137 P---------NCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred C---------CeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 2 48888889989999999999 776 789999999988777754
No 388
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.17 E-value=3.1e-06 Score=87.50 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=63.8
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc-C----CcEEEEecchhh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC-S----LRFISVKGPELL 915 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~-g----~~~i~v~~~el~ 915 (1010)
..+.||.|.++..+.+.-..... + -.+++|.|||||||||.+.++|+++ | ..+.+++.++-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~g--------n-----mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKEG--------N-----MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHcC--------C-----CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 56788999999888887665421 1 1389999999999999999999987 3 236777777643
Q ss_pred hhhhcccHHHHHHHHHHHhc-CCC---eEEEEeCCCccC
Q 001808 916 NKYIGASEQAVRDIFSKATA-AAP---CLLFFDEFDSIA 950 (1010)
Q Consensus 916 ~~~ig~se~~l~~lf~~A~~-~~p---~VLfiDEid~l~ 950 (1010)
+ +.-- ++--..|.+-+- .+| .|+++||+|+.-
T Consensus 91 G--IDvV-Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 91 G--IDVV-RNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred c--cHHH-HHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 3 1111 222234443322 233 499999999983
No 389
>PRK15115 response regulator GlrR; Provisional
Probab=98.16 E-value=2.2e-05 Score=93.24 Aligned_cols=196 Identities=15% Similarity=0.239 Sum_probs=111.3
Q ss_pred cccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC
Q 001808 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1010)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1010)
+.|....+..+.+.+..+... ...++|+|++|||||++|+++.+..... ...++.++|..+...
T Consensus 136 lig~s~~~~~~~~~~~~~a~~-------------~~~vli~Ge~GtGk~~lA~~ih~~s~r~---~~~f~~i~c~~~~~~ 199 (444)
T PRK15115 136 IVTRSPLMLRLLEQARMVAQS-------------DVSVLINGQSGTGKEILAQAIHNASPRA---SKPFIAINCGALPEQ 199 (444)
T ss_pred ccccCHHHHHHHHHHHhhccC-------------CCeEEEEcCCcchHHHHHHHHHHhcCCC---CCCeEEEeCCCCCHH
Confidence 445555666666655444322 2569999999999999999998865422 267899999987432
Q ss_pred chhhHHHHHHHHHHHH---------------HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccc
Q 001808 636 KGPIIRQALSNFISEA---------------LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEK 700 (1010)
Q Consensus 636 ~~~~~~~~l~~~f~~a---------------~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~ 700 (1010)
.. +. .+|... .....+.|||||+|.|- . .....|.+.++.....
T Consensus 200 ~~---~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~-----------~----~~q~~L~~~l~~~~~~ 258 (444)
T PRK15115 200 LL---ES---ELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP-----------A----PLQVKLLRVLQERKVR 258 (444)
T ss_pred HH---HH---HhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC-----------H----HHHHHHHHHHhhCCEE
Confidence 21 11 112110 11235699999999983 2 2223343444322110
Q ss_pred --cCCccCCCcEEEEEecCCccccChhhhcCCcccc-------cccCCCCcHHHH----HHHHHHHhhh----cc---cc
Q 001808 701 --RKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAASER----KAILEHEIQR----RS---LE 760 (1010)
Q Consensus 701 --~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~-------~i~l~~P~~~eR----~~IL~~~l~~----~~---~~ 760 (1010)
+.......++.+|++++.. +...+ ..|+|.. .+.+..|.-.+| ..++++++.. .+ ..
T Consensus 259 ~~g~~~~~~~~~rii~~~~~~--l~~~~-~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~ 335 (444)
T PRK15115 259 PLGSNRDIDIDVRIISATHRD--LPKAM-ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRA 335 (444)
T ss_pred eCCCCceeeeeEEEEEeCCCC--HHHHH-HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCC
Confidence 0001111257888888742 22222 2233311 233444444444 3344555543 12 24
Q ss_pred cChHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 761 ~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
++++.+..+..+.-..+.++|++++++++..
T Consensus 336 ~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 336 FSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 7889999998887556889999999987643
No 390
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=7e-06 Score=88.80 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=41.5
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
.+++|+||+|||||+|+.++|... |..+..+...+... + ...+.+.+.. ..+|+|||++.+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-~----~~~~~~~~~~-----~dlliiDdi~~~~ 110 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-F----VPEVLEGMEQ-----LSLVCIDNIECIA 110 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-h----hHHHHHHhhh-----CCEEEEeChhhhc
Confidence 479999999999999999999875 44455555544221 1 1112222222 2599999999885
No 391
>PRK08116 hypothetical protein; Validated
Probab=98.14 E-value=7.4e-06 Score=90.24 Aligned_cols=100 Identities=23% Similarity=0.348 Sum_probs=66.4
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhc----ccHHHHHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIG----ASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig----~se~~l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
..+++|+|++|||||+||.++|..+ +.+++.++.++++..+.. ........+++... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 3479999999999999999999986 788899999888765432 12222333444432 34599999996531
Q ss_pred CCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 951 PKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 951 ~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
. ++....+|...++... ..+..+|.|||.
T Consensus 192 ------~---t~~~~~~l~~iin~r~-~~~~~~IiTsN~ 220 (268)
T PRK08116 192 ------D---TEWAREKVYNIIDSRY-RKGLPTIVTTNL 220 (268)
T ss_pred ------C---CHHHHHHHHHHHHHHH-HCCCCEEEECCC
Confidence 1 2334455666665322 244567888887
No 392
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.11 E-value=7.5e-06 Score=91.71 Aligned_cols=105 Identities=16% Similarity=0.258 Sum_probs=67.3
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccH-HHHHHHHHHHhcCCCeEEEEeCCCccCCCC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASE-QAVRDIFSKATAAAPCLLFFDEFDSIAPKR 953 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se-~~l~~lf~~A~~~~p~VLfiDEid~l~~~R 953 (1010)
..|++|+|++|||||+||.++|..+ |..+..+..++++..+..... ..+...++.. ....+|+|||+..-.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e~--- 230 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAEQ--- 230 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCcc---
Confidence 4699999999999999999999998 778888888888765432211 1233444443 345699999997653
Q ss_pred CCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCCCcCC
Q 001808 954 GHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRLEFFH 993 (1010)
Q Consensus 954 ~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~r~gR 993 (1010)
. ++-+...+|..+-......+.-+|.|||..+..
T Consensus 231 ---~---s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~e 264 (306)
T PRK08939 231 ---M---SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDE 264 (306)
T ss_pred ---c---cHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHH
Confidence 1 222333344333100112456788899984433
No 393
>PRK08116 hypothetical protein; Validated
Probab=98.09 E-value=1.2e-05 Score=88.60 Aligned_cols=72 Identities=24% Similarity=0.368 Sum_probs=45.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhH----HHHHHHHHHHHHhcCCeEEEEccch
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII----RQALSNFISEALDHAPSIVIFDNLD 665 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~----~~~l~~~f~~a~~~~PsIL~IDEiD 665 (1010)
+.+++|+|++|||||+||.++++++.... ..+.+++..++........ .....+++... ....+|+|||+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l--~~~dlLviDDlg 188 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL--VNADLLILDDLG 188 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHh--cCCCEEEEeccc
Confidence 35799999999999999999999985432 4567777665432211100 01111222222 345699999985
Q ss_pred h
Q 001808 666 S 666 (1010)
Q Consensus 666 ~ 666 (1010)
.
T Consensus 189 ~ 189 (268)
T PRK08116 189 A 189 (268)
T ss_pred C
Confidence 4
No 394
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.09 E-value=4.6e-06 Score=100.28 Aligned_cols=136 Identities=20% Similarity=0.185 Sum_probs=78.1
Q ss_pred CCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcE-EEEecc---hhhh----
Q 001808 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRF-ISVKGP---ELLN---- 916 (1010)
Q Consensus 845 dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~-i~v~~~---el~~---- 916 (1010)
.+.|++.+|..+.-.+--... ...-....++...|+||+|+||||||++|++++....... +...++ .+..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 466777777766544432211 1111122345556999999999999999999999875432 221111 1111
Q ss_pred -hhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc-----------ccCcEEEE
Q 001808 917 -KYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVF 984 (1010)
Q Consensus 917 -~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e-----------~~~~v~vi 984 (1010)
...|+..-. ...+..|. ..++++||++.+. ......|+..|+.-. ...++.||
T Consensus 283 ~~~~g~~~~~-~G~l~~A~---~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFTLE-GGALVLAD---NGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEEec-CccEEecC---CCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 011110000 01122232 3499999999984 456777888885311 11468999
Q ss_pred EeCCCCcCCcce
Q 001808 985 AATRLEFFHYNV 996 (1010)
Q Consensus 985 atTn~r~gR~d~ 996 (1010)
||+|...||||.
T Consensus 348 Aa~NP~~g~y~~ 359 (509)
T smart00350 348 AAANPIGGRYDP 359 (509)
T ss_pred EEeCCCCcccCC
Confidence 999996675543
No 395
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.08 E-value=8.2e-06 Score=92.10 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=63.5
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcc---cHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGA---SEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~---se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.+++|+|++|||||+||.++|.++ |..++.++..+++..+... ........++.. ....+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCC--
Confidence 689999999999999999999987 7788999999987754221 111112223332 244699999998763
Q ss_pred CCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
.+.+ ...+|...++.-- ..+--+|.|||.
T Consensus 260 ----~t~~---~~~~Lf~iin~R~-~~~k~tIiTSNl 288 (329)
T PRK06835 260 ----ITEF---SKSELFNLINKRL-LRQKKMIISTNL 288 (329)
T ss_pred ----CCHH---HHHHHHHHHHHHH-HCCCCEEEECCC
Confidence 1222 3344444444211 123456777787
No 396
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.06 E-value=2.4e-05 Score=76.10 Aligned_cols=79 Identities=24% Similarity=0.424 Sum_probs=46.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcc--eeeeEEEEecccccC----------------CchhhHHHHHHHHHHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKD--LVAHIVFVCCSRLSL----------------EKGPIIRQALSNFISEA 651 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~--~~~~~~~i~~s~l~~----------------~~~~~~~~~l~~~f~~a 651 (1010)
.+.++++|++|+|||++++.+++.+..... ....+++++|..... ............+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 356999999999999999999998742100 015666777755331 00012223333333333
Q ss_pred HhcCCeEEEEccchhhh
Q 001808 652 LDHAPSIVIFDNLDSII 668 (1010)
Q Consensus 652 ~~~~PsIL~IDEiD~L~ 668 (1010)
..+...+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 44444599999999973
No 397
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.06 E-value=4e-06 Score=95.57 Aligned_cols=123 Identities=23% Similarity=0.342 Sum_probs=88.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc----CCcEEEEecchhhh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLN 916 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~----g~~~i~v~~~el~~ 916 (1010)
...+++.|-...-+.+.+.+.. |+ ..+.++|++|++||||+.+|+++.... +.+|+.+||..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~---~a--------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKA---YA--------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHh---hC--------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 4456666655555555554442 21 235789999999999999999998665 46899999987754
Q ss_pred h-------------hhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc------
Q 001808 917 K-------------YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV------ 977 (1010)
Q Consensus 917 ~-------------~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~------ 977 (1010)
. |.| ...+-..+|+.|.++ +||+||+..+.+. +...|++.||..+-
T Consensus 144 n~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCCC
Confidence 2 455 234456788888777 9999999999643 67789999985332
Q ss_pred ---cCcEEEEEeCCC
Q 001808 978 ---LTGVFVFAATRL 989 (1010)
Q Consensus 978 ---~~~v~viatTn~ 989 (1010)
...|.+|+||+-
T Consensus 209 ~~~~~dVRli~AT~~ 223 (403)
T COG1221 209 QPRPVDVRLICATTE 223 (403)
T ss_pred CCcCCCceeeecccc
Confidence 236889999988
No 398
>PRK05642 DNA replication initiation factor; Validated
Probab=98.06 E-value=1.3e-05 Score=86.57 Aligned_cols=63 Identities=25% Similarity=0.402 Sum_probs=46.5
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~ 951 (1010)
.+++|+||+|||||+|+++++.++ +..++.++..++...+ ..+.+..+ ...+|+|||++.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~ 111 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAG 111 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcC
Confidence 578999999999999999998764 6778888888776521 22333332 225899999998853
No 399
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=1.5e-05 Score=90.21 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCC------------------------cEEEEecchhhhhhhcccHHHHHHHHH
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~------------------------~~i~v~~~el~~~~ig~se~~l~~lf~ 931 (1010)
+.+..+||+||+|+|||++|..+|+.+.. +++.+...+- ++. -.-..+|++.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHH
Confidence 34457999999999999999999988732 2233322100 000 12245666665
Q ss_pred HHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 932 KAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 932 ~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
.+. .++..|++|||+|.+ +....|.||+.|+ |..+++++|.+|+.
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m-----------~~~aaNaLLK~LE--EPp~~~~fiL~t~~ 145 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM-----------NRNAANALLKSLE--EPSGDTVLLLISHQ 145 (328)
T ss_pred HHhhccccCCCeEEEECChhhC-----------CHHHHHHHHHHHh--CCCCCeEEEEEECC
Confidence 553 345679999999998 4668999999998 54455555555555
No 400
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.05 E-value=0.00013 Score=87.26 Aligned_cols=201 Identities=15% Similarity=0.280 Sum_probs=105.0
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEE-Eeccc
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVF-VCCSR 631 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~-i~~s~ 631 (1010)
+.+|.--.+-+++|.+-+...... ..+.+-+||+||+||||||+++.||++++-. +.. .+...
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~~----------~~~~~iLlLtGP~G~GKtttv~~La~elg~~------v~Ew~np~~ 81 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFSG----------SSPKRILLLTGPSGCGKTTTVKVLAKELGFE------VQEWINPVS 81 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhcc----------CCCcceEEEECCCCCCHHHHHHHHHHHhCCe------eEEecCCCC
Confidence 334444556677777777654321 2233468899999999999999999999732 111 11111
Q ss_pred ----------ccCC--chh---hHHHHHHHH-HHHHH-----------hcCCeEEEEccchhhhcCCCCCCCCCCchhHH
Q 001808 632 ----------LSLE--KGP---IIRQALSNF-ISEAL-----------DHAPSIVIFDNLDSIISSSSDPEGSQPSTSVI 684 (1010)
Q Consensus 632 ----------l~~~--~~~---~~~~~l~~~-f~~a~-----------~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~ 684 (1010)
+.+. ..+ .....+.+. +..+. ...+.||+|||+=.++. . .. .
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~-------~---~~-~ 150 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH-------R---DT-S 150 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc-------h---hH-H
Confidence 0000 000 001112222 11111 12466999999855441 1 11 2
Q ss_pred HHHHHHHHHHHhhccccCCccCCCcEEEEEec-CC------cc--------ccChhhhcCCcccccccCCCCcHHHHHHH
Q 001808 685 ALTKFLVDIMDEYGEKRKSSCGIGPIAFVASA-QS------LE--------KIPQSLTSSGRFDFHVQLPAPAASERKAI 749 (1010)
Q Consensus 685 ~l~~~L~~~ld~~~~~~~~~~~~~~v~vIatt-n~------~~--------~L~~~L~r~gRf~~~i~l~~P~~~eR~~I 749 (1010)
.+-..|...+.. ... .++++|.+- .. .. -+++.+....++. +|.|.+-...-....
T Consensus 151 ~f~~~L~~~l~~----~~~----~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKa 221 (519)
T PF03215_consen 151 RFREALRQYLRS----SRC----LPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKA 221 (519)
T ss_pred HHHHHHHHHHHc----CCC----CCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHH
Confidence 333333333321 111 157777662 11 11 2455555433333 688888888777777
Q ss_pred HHHHhhhc-----c-cccC--hHHHHhHhhhcCCCChhhHHHHHHHHHHHHH
Q 001808 750 LEHEIQRR-----S-LECS--DEILLDVASKCDGYDAYDLEILVDRTVHAAV 793 (1010)
Q Consensus 750 L~~~l~~~-----~-~~~~--~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~ 793 (1010)
|+.++... + ...+ ..+++.|+..+.| ||+.++...-..+.
T Consensus 222 L~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 222 LKRILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 77766543 1 1222 3357888877666 88777654443333
No 401
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.04 E-value=7.9e-06 Score=98.48 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=87.0
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK 917 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~ 917 (1010)
..++++.|....-+.+.+.+... + .....+||+|++||||+++|+++.... ..+|+.+++..+-..
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~-------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKL-------A----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 45667777665444444443311 1 124579999999999999999987765 468999998765321
Q ss_pred -----hhcccH-------HHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--c------
Q 001808 918 -----YIGASE-------QAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V------ 977 (1010)
Q Consensus 918 -----~ig~se-------~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~------ 977 (1010)
..|... ..-..+|+.|.++ .|||||++.+. ..+...|+..++.-. .
T Consensus 270 ~~e~elFG~~~~~~~~~~~~~~g~~e~a~~G---tL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~ 335 (520)
T PRK10820 270 VVESELFGHAPGAYPNALEGKKGFFEQANGG---SVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDHE 335 (520)
T ss_pred HHHHHhcCCCCCCcCCcccCCCChhhhcCCC---EEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCcc
Confidence 112110 1122456666544 89999999984 446677888886321 1
Q ss_pred -cCcEEEEEeCCC------CcCCcceEEEecC
Q 001808 978 -LTGVFVFAATRL------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 978 -~~~v~viatTn~------r~gR~d~~l~~~~ 1002 (1010)
.-.+-||+||+. ..|+|...+|+.+
T Consensus 336 ~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL 367 (520)
T PRK10820 336 VHVDVRVICATQKNLVELVQKGEFREDLYYRL 367 (520)
T ss_pred eeeeeEEEEecCCCHHHHHHcCCccHHHHhhc
Confidence 125788999888 4567766555543
No 402
>PRK08727 hypothetical protein; Validated
Probab=98.04 E-value=1.8e-05 Score=85.55 Aligned_cols=64 Identities=28% Similarity=0.340 Sum_probs=45.6
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
..++|+||+|||||+|+.+++..+ |...+.++..++.. .+...++.. ....+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l--~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEAL--EGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHH--hcCCEEEEeCcccccCC
Confidence 459999999999999999997765 55666676655432 233444443 24469999999988643
No 403
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.01 E-value=2.7e-05 Score=79.24 Aligned_cols=114 Identities=26% Similarity=0.362 Sum_probs=74.2
Q ss_pred chhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC-----------------------
Q 001808 848 GLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL----------------------- 904 (1010)
Q Consensus 848 Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~----------------------- 904 (1010)
|++.+.+.|...+... +.+..+||+||+|+||+++|..+|+.+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 5677777777776521 33456899999999999999999988621
Q ss_pred cEEEEecchhhhhhhcccHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCc
Q 001808 905 RFISVKGPELLNKYIGASEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTG 980 (1010)
Q Consensus 905 ~~i~v~~~el~~~~ig~se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~ 980 (1010)
+++.++..+... .+ .-..++.+...+.. +...|++|||+|.+ +....|.||..|+ |..++
T Consensus 69 d~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l-----------~~~a~NaLLK~LE--epp~~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKL-----------TEEAQNALLKTLE--EPPEN 132 (162)
T ss_dssp TEEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHH--STTTT
T ss_pred ceEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhh-----------hHHHHHHHHHHhc--CCCCC
Confidence 233333322100 01 23567777776533 35679999999998 5778999999998 55555
Q ss_pred EEEEEeCCC
Q 001808 981 VFVFAATRL 989 (1010)
Q Consensus 981 v~viatTn~ 989 (1010)
+++|.+|+.
T Consensus 133 ~~fiL~t~~ 141 (162)
T PF13177_consen 133 TYFILITNN 141 (162)
T ss_dssp EEEEEEES-
T ss_pred EEEEEEECC
Confidence 555554444
No 404
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.01 E-value=1.3e-05 Score=94.85 Aligned_cols=114 Identities=19% Similarity=0.231 Sum_probs=76.7
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHcC----CcEEEEecchhh--------------------------hhhhcccHHHH
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAACS----LRFISVKGPELL--------------------------NKYIGASEQAV 926 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~g----~~~i~v~~~el~--------------------------~~~ig~se~~l 926 (1010)
.+.+++|+||||||||++++.++..+. ...+.+ ..+. ...+|.....-
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~--~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALES--AAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEec--chhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 456899999999999999999998762 111111 1111 01233222122
Q ss_pred HHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc-----------ccCcEEEEEeCCCCc----
Q 001808 927 RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATRLEF---- 991 (1010)
Q Consensus 927 ~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e-----------~~~~v~viatTn~r~---- 991 (1010)
...+..|.++ +||+||++.+ ...++..|++.|+.-. ...++.+|||+|.-|
T Consensus 287 pG~l~~A~gG---vLfLDEi~e~-----------~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAHNG---VLFLDELPEF-----------ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhccCC---EEecCCchhC-----------CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 3456777666 9999999876 4568889999885321 123689999999832
Q ss_pred ------------------------CCcceEEEecCCCcc
Q 001808 992 ------------------------FHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 992 ------------------------gR~d~~l~~~~p~~~ 1006 (1010)
.|||..+.++.|+++
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 289999999988765
No 405
>PRK06921 hypothetical protein; Provisional
Probab=98.00 E-value=1.9e-05 Score=86.81 Aligned_cols=68 Identities=22% Similarity=0.333 Sum_probs=47.6
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc----CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCc
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDS 948 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~----g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~ 948 (1010)
..+++|+|++|||||+||.++|..+ |..++.+...+++....... ......++.. ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 5689999999999999999999876 56777888777765432211 1122233332 3457999999954
No 406
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.00 E-value=0.00011 Score=78.99 Aligned_cols=133 Identities=21% Similarity=0.276 Sum_probs=76.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchhhhcC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISS 670 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~ 670 (1010)
.+..++||+|||||..++.+|+.++ .+++.++|+.... ...+.+.+..+.+. .+.+.+||++.|-
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG------~~~~vfnc~~~~~--~~~l~ril~G~~~~-----GaW~cfdefnrl~-- 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALG------RFVVVFNCSEQMD--YQSLSRILKGLAQS-----GAWLCFDEFNRLS-- 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS---HHHHHHHHHHHHHH-----T-EEEEETCCCSS--
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhC------CeEEEeccccccc--HHHHHHHHHHHhhc-----Cchhhhhhhhhhh--
Confidence 4567899999999999999999999 8899999998443 33444444443333 4578999999872
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHHhhccccCC-------ccCCCcEEEEEecCC----ccccChhhhcCCcccccccCC
Q 001808 671 SSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKS-------SCGIGPIAFVASAQS----LEKIPQSLTSSGRFDFHVQLP 739 (1010)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~-------~~~~~~v~vIattn~----~~~L~~~L~r~gRf~~~i~l~ 739 (1010)
......+...+..+.+....+... ..-.....++.|.|+ ...+|+.++. .| +.+.+.
T Consensus 98 ---------~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~ 165 (231)
T PF12774_consen 98 ---------EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMM 165 (231)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--
T ss_pred ---------HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEe
Confidence 333444555555544444322111 000113456667764 3468888876 44 478888
Q ss_pred CCcHHHHHHHH
Q 001808 740 APAASERKAIL 750 (1010)
Q Consensus 740 ~P~~~eR~~IL 750 (1010)
.||.....+++
T Consensus 166 ~PD~~~I~ei~ 176 (231)
T PF12774_consen 166 VPDLSLIAEIL 176 (231)
T ss_dssp S--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 89887765554
No 407
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.99 E-value=7.7e-05 Score=88.48 Aligned_cols=133 Identities=18% Similarity=0.254 Sum_probs=75.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc---C---------------Cchh-hHHHHHH---
Q 001808 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS---L---------------EKGP-IIRQALS--- 645 (1010)
Q Consensus 588 ~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~---~---------------~~~~-~~~~~l~--- 645 (1010)
..+.+++|+||+|+|||++++.++..+..... -..+.+..+. + ..-. .....+.
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g----~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~ 283 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSN----EEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGA 283 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCC----cEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCc
Confidence 34577999999999999999999987752211 1111111110 0 0000 0001111
Q ss_pred ----HHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCCccCCCcEEEEEecC
Q 001808 646 ----NFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQ 717 (1010)
Q Consensus 646 ----~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~v~vIattn 717 (1010)
..+.. ....+|||||++.+- ..+...|.+.|+.-. ..........++.+|+++|
T Consensus 284 ~~~pG~l~~---A~gGvLfLDEi~e~~---------------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~N 345 (506)
T PRK09862 284 IPGPGEISL---AHNGVLFLDELPEFE---------------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMN 345 (506)
T ss_pred eehhhHhhh---ccCCEEecCCchhCC---------------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeec
Confidence 11222 234699999997752 145555666654322 1111111234689999999
Q ss_pred Ccc---------------------ccChhhhcCCcccccccCCCCcHH
Q 001808 718 SLE---------------------KIPQSLTSSGRFDFHVQLPAPAAS 744 (1010)
Q Consensus 718 ~~~---------------------~L~~~L~r~gRf~~~i~l~~P~~~ 744 (1010)
+.. .++..++. ||+.++.++.|+.+
T Consensus 346 P~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 346 PSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 742 35567777 99999999988644
No 408
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.97 E-value=2.2e-05 Score=93.44 Aligned_cols=26 Identities=46% Similarity=0.735 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
+.+++|+||||||||++++.++..+.
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhcccC
Confidence 46799999999999999999998764
No 409
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3.8e-06 Score=96.04 Aligned_cols=47 Identities=30% Similarity=0.469 Sum_probs=39.5
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHc
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~ 902 (1010)
..+.|+.|++.+|+.+.-... -+.|+||+||||||||++|+-+...+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 578899999999998866543 24589999999999999999888766
No 410
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=2.3e-05 Score=88.15 Aligned_cols=123 Identities=17% Similarity=0.263 Sum_probs=83.1
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCc----------EEEEec
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLR----------FISVKG 911 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~----------~i~v~~ 911 (1010)
.|+++.|++.+++.+...+... +.+..+||+||.|+||+++|.++|+.+-.. +...+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999888632 334689999999999999999999886211 111222
Q ss_pred chhh---------hh--------hhc-------c-cHHHHHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchH
Q 001808 912 PELL---------NK--------YIG-------A-SEQAVRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTD 962 (1010)
Q Consensus 912 ~el~---------~~--------~ig-------~-se~~l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~ 962 (1010)
+|+. ++ ..| . .-..+|++.+.+.. +...|++||++|.+ ..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------NE 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------CH
Confidence 2322 00 011 0 01246666555532 45679999999988 45
Q ss_pred HHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 963 RVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 963 rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
...|.||+.|+... +.++|+.|++.
T Consensus 139 ~aaNaLLK~LEEPp--~~~fILi~~~~ 163 (314)
T PRK07399 139 AAANALLKTLEEPG--NGTLILIAPSP 163 (314)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEECCh
Confidence 67899999998433 55777766655
No 411
>PRK08181 transposase; Validated
Probab=97.95 E-value=3.1e-05 Score=85.04 Aligned_cols=74 Identities=24% Similarity=0.403 Sum_probs=46.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhh-HHHHHHHHHHHHHhcCCeEEEEccchhhh
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDSII 668 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~-~~~~l~~~f~~a~~~~PsIL~IDEiD~L~ 668 (1010)
+.+++|+||+|||||.|+.+++.++.... ..+.+++..++....... ....+...+... ..+.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEecccccc
Confidence 46799999999999999999998874332 446666665544321110 011122223222 456799999997753
No 412
>PRK13409 putative ATPase RIL; Provisional
Probab=97.95 E-value=0.0002 Score=87.55 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=25.0
Q ss_pred CCCCceEEEeCCCCCChHHHHHHHHHHc
Q 001808 875 LRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1010)
Q Consensus 875 lr~~~~iLL~GppGtGKT~lAk~lA~~~ 902 (1010)
++.+..+.|.||+|+|||||+++++...
T Consensus 362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~ 389 (590)
T PRK13409 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVL 389 (590)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4667789999999999999999999875
No 413
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.95 E-value=1.5e-05 Score=98.54 Aligned_cols=137 Identities=14% Similarity=0.110 Sum_probs=79.8
Q ss_pred CCCchhhHHHHHHHHhhccC-CCcc---h----hccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC-------CcEEEE
Q 001808 845 DVGGLTDIQNAIKEMIELPS-KFPN---I----FAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS-------LRFISV 909 (1010)
Q Consensus 845 dI~Gl~~vk~~L~e~i~~~~-k~~~---~----~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g-------~~~i~v 909 (1010)
.|.|.+.+|+.+.-.+--.. +... . +....+|...++||+|.||||||.+|++++.... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 45677778777654443222 1110 0 0012356677999999999999999999998753 233333
Q ss_pred ecchhhh-h--hhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc----------
Q 001808 910 KGPELLN-K--YIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE---------- 976 (1010)
Q Consensus 910 ~~~el~~-~--~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e---------- 976 (1010)
....... + ..|+... -...+..|.. .+++|||++.+. ......|+..|+.-.
T Consensus 531 gLTa~~~~~d~~tG~~~l-e~GaLvlAdg---GtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMI-QPGAVVLANG---GVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhhhcccccCcccc-cCCcEEEcCC---CeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcce
Confidence 2222111 0 0011000 0011222333 399999999983 456677888885311
Q ss_pred -ccCcEEEEEeCCCCcCCcce
Q 001808 977 -VLTGVFVFAATRLEFFHYNV 996 (1010)
Q Consensus 977 -~~~~v~viatTn~r~gR~d~ 996 (1010)
...++-||||+|...||||.
T Consensus 596 tL~ar~rVIAAaNP~~gryd~ 616 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNK 616 (915)
T ss_pred ecCCCeEEEEEcCCcccccCc
Confidence 11478999999997777764
No 414
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.94 E-value=3.1e-05 Score=94.13 Aligned_cols=101 Identities=9% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEE-Eecch------
Q 001808 841 SGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFIS-VKGPE------ 913 (1010)
Q Consensus 841 ~~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~-v~~~e------ 913 (1010)
...+++.|.++..+.+..++.-. ..+..++..++|+||||||||++++++|+.++..+++ .+...
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 56788888888777777766521 1123344568999999999999999999999866544 11110
Q ss_pred ----------hhhhhhcccHHHHHHHHHHHhc----------CCCeEEEEeCCCccC
Q 001808 914 ----------LLNKYIGASEQAVRDIFSKATA----------AAPCLLFFDEFDSIA 950 (1010)
Q Consensus 914 ----------l~~~~ig~se~~l~~lf~~A~~----------~~p~VLfiDEid~l~ 950 (1010)
-+..+ ......++.++.+|.. ....|||||||+.++
T Consensus 153 ~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~ 208 (637)
T TIGR00602 153 DHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQF 208 (637)
T ss_pred ccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhc
Confidence 00111 1122345566666542 356799999999876
No 415
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=2.8e-05 Score=88.34 Aligned_cols=118 Identities=17% Similarity=0.212 Sum_probs=77.7
Q ss_pred CcCCCCc-hhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC----------------
Q 001808 842 GWDDVGG-LTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL---------------- 904 (1010)
Q Consensus 842 ~~~dI~G-l~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~---------------- 904 (1010)
.|++|.| ++.+.+.+...+.. -+.+..+||+||+|+||+++|+.+|+.+-.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3667666 88898888887752 133456799999999999999999988621
Q ss_pred --------cEEEEecchhhhhhhcccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHh
Q 001808 905 --------RFISVKGPELLNKYIGASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTEL 972 (1010)
Q Consensus 905 --------~~i~v~~~el~~~~ig~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~l 972 (1010)
++..+... ++.+ .-..+|++.+.+. .+...|++|||+|.+ +....|.||+.|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------TASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------CHHHHHHHHHHh
Confidence 12222111 0001 1245666665543 234579999999888 466889999999
Q ss_pred cCccccCcE-EEEEeCCC
Q 001808 973 DGVEVLTGV-FVFAATRL 989 (1010)
Q Consensus 973 dg~e~~~~v-~viatTn~ 989 (1010)
+ |..+.+ +|+.|+++
T Consensus 135 E--EPp~~~~~Il~t~~~ 150 (329)
T PRK08058 135 E--EPSGGTTAILLTENK 150 (329)
T ss_pred c--CCCCCceEEEEeCCh
Confidence 8 444444 55555554
No 416
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.94 E-value=8.6e-05 Score=88.76 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=27.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccC
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~ 617 (1010)
.+.++..+-|+|+.|+|||||.+.|++.+...
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~ 56 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPD 56 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC
Confidence 35666779999999999999999999988543
No 417
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.93 E-value=9.7e-05 Score=82.15 Aligned_cols=159 Identities=19% Similarity=0.314 Sum_probs=84.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH--hccCcceeeeEEEEecccccC--------------C-----chhhHHHHHHHHH
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKS--LEHHKDLVAHIVFVCCSRLSL--------------E-----KGPIIRQALSNFI 648 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~--L~~~~~~~~~~~~i~~s~l~~--------------~-----~~~~~~~~l~~~f 648 (1010)
.+-|.|+|++|+|||+||+.+++. ..... ..++.++++.-.. . ....... +...+
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f---~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l 94 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRF---DGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEE-LQDQL 94 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCC---TEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHH-HHHHH
T ss_pred eEEEEEEcCCcCCcceeeeeccccccccccc---cccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 356999999999999999999987 33333 2334444332111 1 1111222 22333
Q ss_pred HHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhc
Q 001808 649 SEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTS 728 (1010)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r 728 (1010)
.+.....+.+|+|||++... .+ ..+...+.... . +..+|.||.... +...+..
T Consensus 95 ~~~L~~~~~LlVlDdv~~~~----------------~~-~~l~~~~~~~~---~------~~kilvTTR~~~-v~~~~~~ 147 (287)
T PF00931_consen 95 RELLKDKRCLLVLDDVWDEE----------------DL-EELREPLPSFS---S------GSKILVTTRDRS-VAGSLGG 147 (287)
T ss_dssp HHHHCCTSEEEEEEEE-SHH----------------HH--------HCHH---S------S-EEEEEESCGG-GGTTHHS
T ss_pred hhhhccccceeeeeeecccc----------------cc-ccccccccccc---c------cccccccccccc-ccccccc
Confidence 34444568999999986652 11 11111111111 0 245666776543 2222211
Q ss_pred CCcccccccCCCCcHHHHHHHHHHHhhhcc---cccChHHHHhHhhhcCCCChhhHHH
Q 001808 729 SGRFDFHVQLPAPAASERKAILEHEIQRRS---LECSDEILLDVASKCDGYDAYDLEI 783 (1010)
Q Consensus 729 ~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~---~~~~~~~l~~la~~t~g~s~~DL~~ 783 (1010)
. ...++++..+.++-.++|........ ....++....++..|.|. |..+..
T Consensus 148 --~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 201 (287)
T PF00931_consen 148 --T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKL 201 (287)
T ss_dssp --C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHH
T ss_pred --c-ccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 1 34788999999999999998766443 112244567888888874 433433
No 418
>PRK12377 putative replication protein; Provisional
Probab=97.93 E-value=4.1e-05 Score=83.05 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHH--HHHHHHHHHHHhcCCeEEEEccchhh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIR--QALSNFISEALDHAPSIVIFDNLDSI 667 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~--~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1010)
.+++|+||||||||+||.++|+.+.... ..+.+++..++...-..... ....+.+... ....+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 5799999999999999999999986432 33566666554431111000 0111222222 46679999999664
No 419
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=2.9e-05 Score=91.78 Aligned_cols=72 Identities=21% Similarity=0.379 Sum_probs=52.5
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccHH---HHHHHHHHHhcCCCeEEEEeCCCcc
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQ---AVRDIFSKATAAAPCLLFFDEFDSI 949 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se~---~l~~lf~~A~~~~p~VLfiDEid~l 949 (1010)
..+++|+|++|||||+|+++++..+ +..++.++..++...+...... .+..+.... ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3469999999999999999999865 5678899999988776544322 222222222 35669999999988
Q ss_pred CC
Q 001808 950 AP 951 (1010)
Q Consensus 950 ~~ 951 (1010)
.+
T Consensus 219 ~~ 220 (450)
T PRK14087 219 SY 220 (450)
T ss_pred cC
Confidence 53
No 420
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.92 E-value=3.1e-05 Score=75.25 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=60.4
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc--------CCcEEEEecchhhh------h----h----hc-ccHHH-HHHHHHH
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC--------SLRFISVKGPELLN------K----Y----IG-ASEQA-VRDIFSK 932 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~--------g~~~i~v~~~el~~------~----~----ig-~se~~-l~~lf~~ 932 (1010)
.++.++++|++|+|||++++.++..+ ..+++.++.+.... . + .+ .+... ...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35678999999999999999999987 67777776654331 0 0 11 12222 3333344
Q ss_pred HhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeC
Q 001808 933 ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAAT 987 (1010)
Q Consensus 933 A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatT 987 (1010)
.......+|+|||+|.+. ....++.|...++ +..=.++++++.
T Consensus 83 l~~~~~~~lviDe~~~l~----------~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF----------SDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHH----------THHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcC----------CHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 444444699999999974 2567888877776 322345555553
No 421
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.92 E-value=1.3e-05 Score=97.57 Aligned_cols=98 Identities=19% Similarity=0.250 Sum_probs=65.9
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCC--cEEEEecchhhhhhhcccH--HHH--------HHHHHHHhcCCCeEEEEeC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSL--RFISVKGPELLNKYIGASE--QAV--------RDIFSKATAAAPCLLFFDE 945 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~--~~i~v~~~el~~~~ig~se--~~l--------~~lf~~A~~~~p~VLfiDE 945 (1010)
-+|+||.|++|||||++|++++..+.. +|+.+.....-....|... ..+ ..++.+|. ..+||+||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~---~GvL~lDE 92 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAP---RGVLYVDM 92 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCC---CCcEeccc
Confidence 469999999999999999999999864 5887764322233333310 000 00122222 23999999
Q ss_pred CCccCCCCCCCCCcchHHHHHHHHHHhcCcc-----------ccCcEEEEEeCCC
Q 001808 946 FDSIAPKRGHDNTGVTDRVVNQFLTELDGVE-----------VLTGVFVFAATRL 989 (1010)
Q Consensus 946 id~l~~~R~~~~~~~~~rv~~~lL~~ldg~e-----------~~~~v~viatTn~ 989 (1010)
++.+ ...+.+.|+..|+.-. ....+.||||+|.
T Consensus 93 i~rl-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np 136 (589)
T TIGR02031 93 ANLL-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDP 136 (589)
T ss_pred hhhC-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCC
Confidence 9998 4568899999997211 0136889999998
No 422
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.92 E-value=5.7e-05 Score=80.07 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCch-----------------------hhHHH
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-----------------------PIIRQ 642 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~-----------------------~~~~~ 642 (1010)
|++.+.-++|+||||||||+++..++....... ..+.++++..+..... .....
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 84 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGV 84 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHH
Confidence 567777799999999999999999987764321 4677888765211110 11122
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhc
Q 001808 643 ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 643 ~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1010)
.+..+...+.++.+.+|+||-+..++.
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 244444445556889999999999863
No 423
>PRK06526 transposase; Provisional
Probab=97.90 E-value=1.7e-05 Score=86.61 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchh-hHHHHHHHHHHHHHhcCCeEEEEccchhh
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-IIRQALSNFISEALDHAPSIVIFDNLDSI 667 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~-~~~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1010)
+.+++|+||||||||+|+.+++.++.... ..+.++++.++...... .....+...+... ..+.+|+|||++.+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccC
Confidence 46799999999999999999998874322 33444554443221110 0011122222221 35689999999876
No 424
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.88 E-value=2.1e-05 Score=87.87 Aligned_cols=82 Identities=26% Similarity=0.424 Sum_probs=56.3
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC--CcEEEEecchhhhhhhc
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYIG 920 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g--~~~i~v~~~el~~~~ig 920 (1010)
-+.+.|+.+++++.--.+++-. .+...+.++||.||||||||.||-++|+++| .||+.++++|+++.-+.
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk--------~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIK--------EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHH--------TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHHHHh--------cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 4577899998888655544321 1223467899999999999999999999997 78999999999875554
Q ss_pred ccHHHHHHHHHHH
Q 001808 921 ASEQAVRDIFSKA 933 (1010)
Q Consensus 921 ~se~~l~~lf~~A 933 (1010)
.+| .+.+.|++|
T Consensus 95 KTE-~L~qa~Rra 106 (398)
T PF06068_consen 95 KTE-ALTQAFRRA 106 (398)
T ss_dssp HHH-HHHHHHHCS
T ss_pred chH-HHHHHHHHh
Confidence 443 466667665
No 425
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2.9e-05 Score=88.98 Aligned_cols=102 Identities=24% Similarity=0.409 Sum_probs=70.8
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCc-----EEEEecchhhhhh---------------hcccH-HHHHHHHHHHhc-
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLR-----FISVKGPELLNKY---------------IGASE-QAVRDIFSKATA- 935 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~-----~i~v~~~el~~~~---------------ig~se-~~l~~lf~~A~~- 935 (1010)
+.++++||+||||||..++.+++++... ++.+|+..+-..| .|.+. +....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 4469999999999999999999998433 8899886653321 12222 234444444433
Q ss_pred CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 936 AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 936 ~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
...-|+++||+|.+..+.+ .++-.|+...+.. .-++.+|+.+|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~vi~i~n~ 165 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSIIAVSND 165 (366)
T ss_pred CCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEEEEEecc
Confidence 4566999999999985533 4666666666532 567889999988
No 426
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.87 E-value=7.9e-05 Score=73.85 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=27.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhccC
Q 001808 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1010)
Q Consensus 585 ~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~ 617 (1010)
+.+.++..++|+||+|||||+|.|++|....-.
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 345667789999999999999999999977533
No 427
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.87 E-value=3.8e-05 Score=82.13 Aligned_cols=70 Identities=26% Similarity=0.521 Sum_probs=51.2
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccHHH-HHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQA-VRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se~~-l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
..++||||+|+|||+|.++++... +..++.++..++...+....... +..+.... ....+|+||+++.+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~ 110 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLA 110 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhc
Confidence 468999999999999999999875 56789999989887665443221 22222322 245699999999986
No 428
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.87 E-value=8.2e-05 Score=80.54 Aligned_cols=72 Identities=14% Similarity=0.339 Sum_probs=46.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhH---HHHHHHHHHHHHhcCCeEEEEccchhh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII---RQALSNFISEALDHAPSIVIFDNLDSI 667 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~---~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1010)
.+++|+|++|||||+|+.++|.++.... ..+.+++..++........ ......+++.. ...++|+|||++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l--~~~dlLvIDDig~~ 174 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITVADIMSAMKDTFSNSETSEEQLLNDL--SNVDLLVIDEIGVQ 174 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh--ccCCEEEEeCCCCC
Confidence 4799999999999999999999985432 4556666665542211110 01112333332 35789999999764
No 429
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=97.86 E-value=0.00029 Score=81.48 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=25.8
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHc
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~ 902 (1010)
.++.+.+.+-++||+||||+|+.+.+-..+
T Consensus 411 fgid~~srvAlVGPNG~GKsTLlKl~~gdl 440 (614)
T KOG0927|consen 411 FGIDLDSRVALVGPNGAGKSTLLKLITGDL 440 (614)
T ss_pred cccCcccceeEecCCCCchhhhHHHHhhcc
Confidence 456778899999999999999999887665
No 430
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.86 E-value=0.00031 Score=83.33 Aligned_cols=196 Identities=16% Similarity=0.218 Sum_probs=107.5
Q ss_pred cccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC
Q 001808 556 LSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE 635 (1010)
Q Consensus 556 l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~ 635 (1010)
+.|....+..+.+.+..+.. ....++++|.+|+||+++++++....... ..+++.++|..+...
T Consensus 141 lig~s~~~~~~~~~i~~~~~-------------~~~~vli~ge~g~gk~~~a~~ih~~s~~~---~~~~i~~~c~~~~~~ 204 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVAP-------------SEATVLIHGDSGTGKELVARAIHASSARS---EKPLVTLNCAALNES 204 (441)
T ss_pred eEecCHHHHHHHHHHhhccC-------------CCCeEEEEecCCCCHHHHHHHHHHcCCCC---CCCeeeeeCCCCCHH
Confidence 34455566666555533322 23669999999999999999998764322 267999999976532
Q ss_pred chhhHHHHHHHHHHH---------------HHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc--
Q 001808 636 KGPIIRQALSNFISE---------------ALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG-- 698 (1010)
Q Consensus 636 ~~~~~~~~l~~~f~~---------------a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~-- 698 (1010)
. ++. .+|.. .....+++|||||++.|- ...... |.+.++...
T Consensus 205 ~---~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~-----------~~~q~~----l~~~l~~~~~~ 263 (441)
T PRK10365 205 L---LES---ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS-----------PMMQVR----LLRAIQEREVQ 263 (441)
T ss_pred H---HHH---HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC-----------HHHHHH----HHHHHccCcEE
Confidence 1 111 11111 011246789999999984 122223 333333211
Q ss_pred cccCCccCCCcEEEEEecCCccccChhhhcCCcccc-------cccCCCCcHH----HHHHHHHHHhhhc----c---cc
Q 001808 699 EKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDF-------HVQLPAPAAS----ERKAILEHEIQRR----S---LE 760 (1010)
Q Consensus 699 ~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~-------~i~l~~P~~~----eR~~IL~~~l~~~----~---~~ 760 (1010)
..+.......++.+|++++..- . .+...++|.. .+.+..|... +...++++++.+. + ..
T Consensus 264 ~~~~~~~~~~~~rii~~t~~~~--~-~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (441)
T PRK10365 264 RVGSNQTISVDVRLIAATHRDL--A-AEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKG 340 (441)
T ss_pred eCCCCceeeeceEEEEeCCCCH--H-HHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCC
Confidence 0000000112467787775421 1 1112223311 2334444443 3344555555431 1 33
Q ss_pred cChHHHHhHhhhcCCCChhhHHHHHHHHHHH
Q 001808 761 CSDEILLDVASKCDGYDAYDLEILVDRTVHA 791 (1010)
Q Consensus 761 ~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~ 791 (1010)
++++.+..+....-..+.++|++++++++..
T Consensus 341 ~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 341 FTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred cCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 7888888888876455788899988887643
No 431
>PRK09183 transposase/IS protein; Provisional
Probab=97.85 E-value=4.1e-05 Score=83.95 Aligned_cols=76 Identities=22% Similarity=0.334 Sum_probs=48.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCch-hhHHHHHHHHHHHHHhcCCeEEEEccchh
Q 001808 588 PLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG-PIIRQALSNFISEALDHAPSIVIFDNLDS 666 (1010)
Q Consensus 588 ~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~-~~~~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1010)
..+.+++|+||+|||||+|+.+++..+.... ..+.++++.++..... ......+...++.. ...+.+++|||++.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~ 175 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGY 175 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEccccc
Confidence 3457799999999999999999988753222 4455666655442211 11111233444433 24678999999976
Q ss_pred h
Q 001808 667 I 667 (1010)
Q Consensus 667 L 667 (1010)
.
T Consensus 176 ~ 176 (259)
T PRK09183 176 L 176 (259)
T ss_pred C
Confidence 4
No 432
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.81 E-value=4.4e-05 Score=83.82 Aligned_cols=85 Identities=21% Similarity=0.370 Sum_probs=63.1
Q ss_pred CcCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcC--CcEEEEecchhhhhhh
Q 001808 842 GWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACS--LRFISVKGPELLNKYI 919 (1010)
Q Consensus 842 ~~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g--~~~i~v~~~el~~~~i 919 (1010)
.-+.+.|+.+++++.--.+++. +.+...+.++|+.||||||||.||-++|+++| .||..++++++++.-+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mi--------k~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~ 108 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMI--------KQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEV 108 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHH--------HhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecc
Confidence 3456778888887654333321 12334567999999999999999999999996 7899999999988655
Q ss_pred cccHHHHHHHHHHHhc
Q 001808 920 GASEQAVRDIFSKATA 935 (1010)
Q Consensus 920 g~se~~l~~lf~~A~~ 935 (1010)
..+| .+.+.|++|-+
T Consensus 109 kKTE-~L~qa~RraIG 123 (450)
T COG1224 109 KKTE-ALTQALRRAIG 123 (450)
T ss_pred cHHH-HHHHHHHHhhc
Confidence 5554 46677777744
No 433
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.80 E-value=7.3e-05 Score=75.04 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=61.6
Q ss_pred EEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhh----------------------hcc--cHHHHHHHHHHH
Q 001808 881 VLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY----------------------IGA--SEQAVRDIFSKA 933 (1010)
Q Consensus 881 iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~----------------------ig~--se~~l~~lf~~A 933 (1010)
++++|+||+|||+++..++... +.+++.++..+..... ... .+...+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5666666554332210 000 011112234555
Q ss_pred hcCCCeEEEEeCCCccCCCCCC---CCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 934 TAAAPCLLFFDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 934 ~~~~p~VLfiDEid~l~~~R~~---~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
....+.+++|||+..++..... +......+.+..++..+. ..++-+|++++.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~ 136 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQV 136 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEec
Confidence 6678899999999988653221 122223344555555543 235555555554
No 434
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00025 Score=78.26 Aligned_cols=125 Identities=14% Similarity=0.187 Sum_probs=76.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCc----------ceeeeEEEEecccc-cCCchhhHHHHHHHHHHHHHhcCCeE
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHK----------DLVAHIVFVCCSRL-SLEKGPIIRQALSNFISEALDHAPSI 658 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~----------~~~~~~~~i~~s~l-~~~~~~~~~~~l~~~f~~a~~~~PsI 658 (1010)
+..+||+||.|+||+++|.++|+.+-... +.-..+..+....- ..-..+.++...+.+..........|
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceE
Confidence 35699999999999999999999885321 00011222222111 01133444443333322222334469
Q ss_pred EEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccC
Q 001808 659 VIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQL 738 (1010)
Q Consensus 659 L~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l 738 (1010)
++||++|.+-. .-.+.|+..+++... ++.+|..++.++.+.|.+++ |.. .+.|
T Consensus 99 ~ii~~ad~mt~---------------~AaNaLLK~LEEPp~---------~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~ 151 (290)
T PRK05917 99 YIIHEADRMTL---------------DAISAFLKVLEDPPQ---------HGVIILTSAKPQRLPPTIRS--RSL-SIHI 151 (290)
T ss_pred EEEechhhcCH---------------HHHHHHHHHhhcCCC---------CeEEEEEeCChhhCcHHHHh--cce-EEEc
Confidence 99999999841 334456666665443 48888888889999999998 665 5666
Q ss_pred CCC
Q 001808 739 PAP 741 (1010)
Q Consensus 739 ~~P 741 (1010)
+++
T Consensus 152 ~~~ 154 (290)
T PRK05917 152 PME 154 (290)
T ss_pred cch
Confidence 654
No 435
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.78 E-value=0.00012 Score=88.51 Aligned_cols=164 Identities=13% Similarity=0.133 Sum_probs=92.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHH---HHHH--HHhcCCeEEEEccch
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSN---FISE--ALDHAPSIVIFDNLD 665 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~---~f~~--a~~~~PsIL~IDEiD 665 (1010)
+||+|.|+.|+|||+++++++..+.........-..++...+.+. .+++..+.. .++. .......||||||++
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg--~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGG--LDLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCC--chHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 689999999999999999999988632111011111222233332 222222211 0100 011123699999997
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc----cccCCccCCCcEEEEEecCCc---cccChhhhcCCcccccccC
Q 001808 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG----EKRKSSCGIGPIAFVASAQSL---EKIPQSLTSSGRFDFHVQL 738 (1010)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~----~~~~~~~~~~~v~vIattn~~---~~L~~~L~r~gRf~~~i~l 738 (1010)
.+- ..++..|.+.|+.-. .......-..++++|++.+.. ..+++.++. ||+..+.+
T Consensus 104 ~~~---------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 104 RLE---------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCC---------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 763 256666777766431 111111122367888875432 347888888 99999999
Q ss_pred CCCcHHHH-------HHHHHHHhhhcccccChHHHHhHhhhc
Q 001808 739 PAPAASER-------KAILEHEIQRRSLECSDEILLDVASKC 773 (1010)
Q Consensus 739 ~~P~~~eR-------~~IL~~~l~~~~~~~~~~~l~~la~~t 773 (1010)
+.|+..+. ..|.+..-.-....+++..+..++..+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~ 208 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAA 208 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 98876532 233332221124567777777665544
No 436
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.77 E-value=9.4e-05 Score=69.75 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=53.2
Q ss_pred EEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcc
Q 001808 881 VLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGV 960 (1010)
Q Consensus 881 iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~ 960 (1010)
+.|+|+||+|||++|+.+|..+...+-.-....++. ... -...|..-+ + ..++++||+...... .
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~---~~~---~~~~w~gY~-~-q~vvi~DD~~~~~~~------~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT---RNP---GDKFWDGYQ-G-QPVVIIDDFGQDNDG------Y- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe---CCC---ccchhhccC-C-CcEEEEeecCccccc------c-
Confidence 579999999999999999887743221111111111 000 112233322 2 238899999876421 1
Q ss_pred hHHHHHHHHHHhcCccc-------------cCcEEEEEeCCC
Q 001808 961 TDRVVNQFLTELDGVEV-------------LTGVFVFAATRL 989 (1010)
Q Consensus 961 ~~rv~~~lL~~ldg~e~-------------~~~v~viatTn~ 989 (1010)
......+++..++.... ....+||+|||.
T Consensus 66 ~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 66 NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 22356777777764321 134788888884
No 437
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0001 Score=83.64 Aligned_cols=117 Identities=16% Similarity=0.153 Sum_probs=74.1
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCCc-------------------------EEEEecchhhh--------hh----
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSLR-------------------------FISVKGPELLN--------KY---- 918 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~~-------------------------~i~v~~~el~~--------~~---- 918 (1010)
+.+..+||+||+|+||+++|+.+|+.+... ++.+....... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 556789999999999999999999887321 22221110000 00
Q ss_pred --hc---------ccHHHHHHHHHHHh----cCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEE
Q 001808 919 --IG---------ASEQAVRDIFSKAT----AAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFV 983 (1010)
Q Consensus 919 --ig---------~se~~l~~lf~~A~----~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~v 983 (1010)
.| -.-..+|++.+.+. .++..|++||++|.+ +....|.||+-|+ |...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL-----------NVAAANALLKTLE--EPPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc-----------CHHHHHHHHHHhc--CCCcCcEE
Confidence 00 01245666666543 345579999999998 4668999999998 66666655
Q ss_pred EEeCCC-------CcCCcceEEEecCCCcc
Q 001808 984 FAATRL-------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 984 iatTn~-------r~gR~d~~l~~~~p~~~ 1006 (1010)
|.+|++ --.|. ..+.|++|+.+
T Consensus 166 iL~t~~~~~LLpTI~SRc-q~i~~~~~~~~ 194 (342)
T PRK06964 166 LLVSARIDRLLPTILSRC-RQFPMTVPAPE 194 (342)
T ss_pred EEEECChhhCcHHHHhcC-EEEEecCCCHH
Confidence 555554 22344 57777777654
No 438
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.76 E-value=0.00012 Score=82.86 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=46.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhh-H--HHHHHHHHHHHHhcCCeEEEEccchhh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-I--RQALSNFISEALDHAPSIVIFDNLDSI 667 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~-~--~~~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1010)
.+++|+|++|+|||+|+.++|+++-... ..+.+++..++....... . .......++. .....+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~--l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADELIEILREIRFNNDKELEEVYDL--LINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHHHHHHHHHHHhccchhHHHHHHH--hccCCEEEEeccCCC
Confidence 6799999999999999999999985332 457777776654321110 0 0001111222 235579999999664
No 439
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.75 E-value=0.0011 Score=70.60 Aligned_cols=177 Identities=20% Similarity=0.307 Sum_probs=103.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC-------------chhh----HHHHHHHHHHHHHh
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE-------------KGPI----IRQALSNFISEALD 653 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~-------------~~~~----~~~~l~~~f~~a~~ 653 (1010)
+-+.++|+-|||||+++|++...+..+.. -+++++...+... .... .++.-+.+......
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~---~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~ 128 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQV---AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKK 128 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCce---EEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHh
Confidence 35899999999999999977776653322 1245544332211 1111 12222222222222
Q ss_pred -cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcC---
Q 001808 654 -HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSS--- 729 (1010)
Q Consensus 654 -~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~--- 729 (1010)
..|-++++||++.+.. ... +.++.|.+.-.+.... -.+++++-.. +.+.++.+
T Consensus 129 g~r~v~l~vdEah~L~~-----------~~l-e~Lrll~nl~~~~~~~-------l~ivL~Gqp~----L~~~lr~~~l~ 185 (269)
T COG3267 129 GKRPVVLMVDEAHDLND-----------SAL-EALRLLTNLEEDSSKL-------LSIVLIGQPK----LRPRLRLPVLR 185 (269)
T ss_pred CCCCeEEeehhHhhhCh-----------hHH-HHHHHHHhhcccccCc-------eeeeecCCcc----cchhhchHHHH
Confidence 3568999999999852 111 2222233332222211 1244444332 33322221
Q ss_pred ---CcccccccCCCCcHHHHHHHHHHHhhhcccc---cChHHHHhHhhhcCCCChhhHHHHHHHHHHHHHH
Q 001808 730 ---GRFDFHVQLPAPAASERKAILEHEIQRRSLE---CSDEILLDVASKCDGYDAYDLEILVDRTVHAAVG 794 (1010)
Q Consensus 730 ---gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~---~~~~~l~~la~~t~g~s~~DL~~Lv~~A~~~a~~ 794 (1010)
.|+...++++|.+.++-...+++.++..+.. ++++.+..+.....| .|+-+..++..|...+..
T Consensus 186 e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 186 ELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred hhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 2777668999999999999999988865432 567778888888888 566788888877766653
No 440
>PRK06921 hypothetical protein; Provisional
Probab=97.75 E-value=7.8e-05 Score=82.06 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=44.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHHHHHHHHHHHHhcCCeEEEEccchh
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDS 666 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1010)
..+++|+|++|+|||+|+.++|+++....+ ..+.++...++........ ..+...+.. .....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 467999999999999999999998864311 4456666544322111111 111122222 24567999999954
No 441
>PF14516 AAA_35: AAA-like domain
Probab=97.75 E-value=0.0013 Score=74.79 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=98.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHH---------------------------
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ--------------------------- 642 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~--------------------------- 642 (1010)
+..+.|.||..+|||+++..+.+.+.... ..++++++..+.........+
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~ 107 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEI 107 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhc
Confidence 46699999999999999999998885432 567788887754321111111
Q ss_pred ----HHHHHHHHH---HhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCccCCCcEEEEEe
Q 001808 643 ----ALSNFISEA---LDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGPIAFVAS 715 (1010)
Q Consensus 643 ----~l~~~f~~a---~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~v~vIat 715 (1010)
.+...|.+. ....|-||+|||+|.++. .......+...|..+...... ...+ ..+.++.+
T Consensus 108 ~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~---------~~~~~~dF~~~LR~~~~~~~~-~~~~---~~L~li~~ 174 (331)
T PF14516_consen 108 GSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE---------YPQIADDFFGLLRSWYEQRKN-NPIW---QKLRLILA 174 (331)
T ss_pred CChhhHHHHHHHHHHhcCCCCEEEEEechhhhcc---------CcchHHHHHHHHHHHHHhccc-Cccc---ceEEEEEe
Confidence 111122211 113678999999999972 111223555555554442221 1111 12333333
Q ss_pred -cCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccChHHHHhHhhhcCCCC
Q 001808 716 -AQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYD 777 (1010)
Q Consensus 716 -tn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~~~l~~la~~t~g~s 777 (1010)
+.........-.++..+...+.++..+.++...+++. ++...++..++.+...+.|..
T Consensus 175 ~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 175 GSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCH
Confidence 2222222112233434556789999999998777655 456677777999999999954
No 442
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.75 E-value=3.6e-05 Score=95.36 Aligned_cols=145 Identities=17% Similarity=0.094 Sum_probs=79.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhccCc-ceeeeEEEEecccccCCchhhHHHHHHHHHHH---HHhcCCeEEEEccch
Q 001808 590 PGHILIHGPPGSGKTSLAKAVAKSLEHHK-DLVAHIVFVCCSRLSLEKGPIIRQALSNFISE---ALDHAPSIVIFDNLD 665 (1010)
Q Consensus 590 ~~~VLL~GppGtGKTtLaraLA~~L~~~~-~~~~~~~~i~~s~l~~~~~~~~~~~l~~~f~~---a~~~~PsIL~IDEiD 665 (1010)
..+|||+|+||||||.+|+++++...... .....+..++|....... +.. -..+..+ ......++++|||++
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~-d~~---tG~~~le~GaLvlAdgGtL~IDEid 567 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFN-ESD---NGRAMIQPGAVVLANGGVCCIDELD 567 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhc-ccc---cCcccccCCcEEEcCCCeEEecchh
Confidence 34799999999999999999998543111 000122233333221100 000 0000000 011234699999999
Q ss_pred hhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc---cc-cCCccCCCcEEEEEecCCcc-------------ccChhhhc
Q 001808 666 SIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG---EK-RKSSCGIGPIAFVASAQSLE-------------KIPQSLTS 728 (1010)
Q Consensus 666 ~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~---~~-~~~~~~~~~v~vIattn~~~-------------~L~~~L~r 728 (1010)
.+- . .....|.+.|+.-. .+ +....-...+.+||++|+.. .+++.+++
T Consensus 568 kms-----------~----~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 568 KCH-----------N----ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred hCC-----------H----HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 973 1 23334555554321 11 11111123689999999853 36788999
Q ss_pred CCcccccc-cCCCCcHHHHHHHHHHHhh
Q 001808 729 SGRFDFHV-QLPAPAASERKAILEHEIQ 755 (1010)
Q Consensus 729 ~gRf~~~i-~l~~P~~~eR~~IL~~~l~ 755 (1010)
||+..+ -++.|+.+.=..|.++++.
T Consensus 633 --RFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 633 --RFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred --hhcEEEEecCCCChHHHHHHHHHHHH
Confidence 998664 5677777665566555553
No 443
>PRK06620 hypothetical protein; Validated
Probab=97.75 E-value=7.6e-05 Score=79.47 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.6
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHcCC
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAACSL 904 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~g~ 904 (1010)
..++||||+|||||+|+++++...+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~ 70 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA 70 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC
Confidence 57999999999999999999988765
No 444
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.74 E-value=0.00015 Score=72.78 Aligned_cols=74 Identities=28% Similarity=0.420 Sum_probs=46.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC------------------------chhhHHHHHHHHH
Q 001808 593 ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE------------------------KGPIIRQALSNFI 648 (1010)
Q Consensus 593 VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~------------------------~~~~~~~~l~~~f 648 (1010)
++|+|+||+|||++++.++..+.... ..+.++++...... .............
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE 78 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHH
Confidence 78999999999999999999875322 34455554322110 0011111112233
Q ss_pred HHHHhcCCeEEEEccchhhhc
Q 001808 649 SEALDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 649 ~~a~~~~PsIL~IDEiD~L~~ 669 (1010)
..+....|.+++|||+..+..
T Consensus 79 ~~~~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 79 RLRERGGDDLIILDELTRLVR 99 (165)
T ss_pred HHHhCCCCEEEEEEcHHHHHH
Confidence 444557889999999999874
No 445
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=97.72 E-value=0.00058 Score=76.46 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=51.1
Q ss_pred CCCCCceEEEeCCCCCChHHHHHHHHHHcC-CcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAACS-LRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 874 ~lr~~~~iLL~GppGtGKT~lAk~lA~~~g-~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.++++..+=++|.+||||||+..++.+... .--|.+.+.++-+ .+.+.++-+ +..-.|+|=|.+.++.|+
T Consensus 309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~----~~~~~mrpl-----R~~mQvVFQDPygSLsPR 379 (534)
T COG4172 309 TLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG----LSRKEMRPL-----RRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred EecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc----cChhhhhhh-----hhhceEEEeCCCCCCCcc
Confidence 357788899999999999999999999874 3456676666532 233333222 223359999999999997
Q ss_pred C
Q 001808 953 R 953 (1010)
Q Consensus 953 R 953 (1010)
.
T Consensus 380 m 380 (534)
T COG4172 380 M 380 (534)
T ss_pred c
Confidence 5
No 446
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.70 E-value=0.00023 Score=85.67 Aligned_cols=29 Identities=38% Similarity=0.480 Sum_probs=25.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 587 l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
+.++..+.|.||+|+|||||++.+++.+.
T Consensus 26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 26 LNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 55667799999999999999999999764
No 447
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.67 E-value=3.6e-05 Score=79.53 Aligned_cols=73 Identities=25% Similarity=0.395 Sum_probs=43.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhh-HHHHHHHHHHHHHhcCCeEEEEccchh
Q 001808 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPI-IRQALSNFISEALDHAPSIVIFDNLDS 666 (1010)
Q Consensus 589 ~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~-~~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1010)
.+.+++|+|++|+|||.||.++++++-... ..+.+++..++...-... ......+.++.. ....+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l--~~~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITASDLLDELKQSRSDGSYEELLKRL--KRVDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEHHHHHHHHHCCHCCTTHCHHHHHH--HTSSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeecCceeccccccccccchhhhcCcc--ccccEecccccce
Confidence 357899999999999999999998875422 456777776653211000 001112223322 3457999999843
No 448
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.67 E-value=0.00013 Score=77.27 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=68.1
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhh-hh---hhc-------------------ccHHHH
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELL-NK---YIG-------------------ASEQAV 926 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~-~~---~ig-------------------~se~~l 926 (1010)
.|+..+.-++++||||||||+++..+|... |.+.+.++..++. .+ ... +....+
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 467778889999999999999998877543 6677777775421 00 000 001123
Q ss_pred HHHHHHHhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCC
Q 001808 927 RDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATR 988 (1010)
Q Consensus 927 ~~lf~~A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn 988 (1010)
..+...+....+++++||-+..++..-..+......+.+..++..|..+-...++.++.|+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 44444455557899999999988632111111111223344444444334456777777754
No 449
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.67 E-value=0.00018 Score=80.64 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=77.6
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh----------------hhcccHHHHHHHHHHH
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK----------------YIGASEQAVRDIFSKA 933 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~----------------~ig~se~~l~~lf~~A 933 (1010)
.++..+.-++++||||||||+||-.++... |..++.++..+.... .....++.+..+...+
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 356677889999999999999987655443 667777766443321 0111233444444444
Q ss_pred hcCCCeEEEEeCCCccCCCCC------CCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 934 TAAAPCLLFFDEFDSIAPKRG------HDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 934 ~~~~p~VLfiDEid~l~~~R~------~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
+...++++++|-+.++.++.. ....+...|.++++|..|.+.-...++.+|.|+..
T Consensus 130 ~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQv 191 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQI 191 (321)
T ss_pred hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 566789999999999987532 12223455777788888877766778888887554
No 450
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.66 E-value=0.00025 Score=80.50 Aligned_cols=135 Identities=15% Similarity=0.220 Sum_probs=83.3
Q ss_pred cCCCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEec--------c--
Q 001808 843 WDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKG--------P-- 912 (1010)
Q Consensus 843 ~~dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~--------~-- 912 (1010)
+.-+.|++.++..|.-...- ..-+++|+.|+.||||||+++++|..+.---+...+ +
T Consensus 16 f~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred hhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 44566777777666432211 223689999999999999999999998422211111 0
Q ss_pred ----------------------hhhhhhhcccHH----------HHH--------HHHHHHhcCCCeEEEEeCCCccCCC
Q 001808 913 ----------------------ELLNKYIGASEQ----------AVR--------DIFSKATAAAPCLLFFDEFDSIAPK 952 (1010)
Q Consensus 913 ----------------------el~~~~ig~se~----------~l~--------~lf~~A~~~~p~VLfiDEid~l~~~ 952 (1010)
.+++-=.|.++. .++ .++.+|.++ ||++||+-.+
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRG---IlYvDEvnlL--- 156 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRG---ILYVDEVNLL--- 156 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCC---EEEEeccccc---
Confidence 011111233332 111 122233333 9999999988
Q ss_pred CCCCCCcchHHHHHHHHHHhcCc-----------cccCcEEEEEeCCC--------CcCCcceEEEecCCC
Q 001808 953 RGHDNTGVTDRVVNQFLTELDGV-----------EVLTGVFVFAATRL--------EFFHYNVLLFCSFII 1004 (1010)
Q Consensus 953 R~~~~~~~~~rv~~~lL~~ldg~-----------e~~~~v~viatTn~--------r~gR~d~~l~~~~p~ 1004 (1010)
.+.+++.||..+... .+--++++|+|+|. ...||...+....|.
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~ 219 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPL 219 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCC
Confidence 578999999999631 11237999999999 344677677666554
No 451
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.66 E-value=0.00028 Score=85.30 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 587 l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
+.++..+.|.||+|+|||||++.+++.+.
T Consensus 28 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 28 VYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 55667799999999999999999998763
No 452
>PRK06851 hypothetical protein; Provisional
Probab=97.66 E-value=0.00036 Score=79.51 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhcc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEH 616 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~ 616 (1010)
+-++|.|+|||||||+++.++..+..
T Consensus 31 ~~~il~G~pGtGKStl~~~i~~~~~~ 56 (367)
T PRK06851 31 RIFILKGGPGTGKSTLMKKIGEEFLE 56 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999998853
No 453
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.65 E-value=0.00057 Score=82.88 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 001808 587 LPLPGHILIHGPPGSGKTSLAKAVAKSL 614 (1010)
Q Consensus 587 l~~~~~VLL~GppGtGKTtLaraLA~~L 614 (1010)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 23 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 5566779999999999999999999975
No 454
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=0.00039 Score=86.22 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356667799999999999999999999764
No 455
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.64 E-value=0.00035 Score=84.53 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 587 l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
+.++..+.|.||+|+|||||++.+++.+.
T Consensus 34 i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 34 LHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55666799999999999999999998764
No 456
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.63 E-value=0.00075 Score=74.28 Aligned_cols=206 Identities=17% Similarity=0.205 Sum_probs=115.6
Q ss_pred cccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc
Q 001808 552 NVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR 631 (1010)
Q Consensus 552 ~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~ 631 (1010)
.|..+.+....++.+++....+.-.+ .++||.|..||||-.+|++....-..+ ..+++-++|..
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlD-------------APLLI~GeTGTGKdLlAkaCH~~S~R~---~~pFlalNCA~ 265 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLD-------------APLLITGETGTGKDLLAKACHLASPRH---SKPFLALNCAS 265 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccC-------------CCeEEecCCCchHHHHHHHHhhcCccc---CCCeeEeecCC
Confidence 35566677777777777776644333 569999999999999999876543222 27799999998
Q ss_pred ccCCchhh-H------HHHHHHHHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhccccCCc
Q 001808 632 LSLEKGPI-I------RQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSS 704 (1010)
Q Consensus 632 l~~~~~~~-~------~~~l~~~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~~~~~~ 704 (1010)
+.....+. + .+--..+|+.| ....+|+||+-.+ +......++++|.+.-.+.. +..-
T Consensus 266 lPe~~aEsElFG~apg~~gk~GffE~A---ngGTVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRV--Gee~ 329 (511)
T COG3283 266 LPEDAAESELFGHAPGDEGKKGFFEQA---NGGTVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRV--GEDH 329 (511)
T ss_pred CchhHhHHHHhcCCCCCCCccchhhhc---cCCeEEeehhhhc-----------CHHHHHHHHHHhcCCceeec--CCcc
Confidence 76432211 0 00011233333 2347999999665 33444566666654321111 1111
Q ss_pred cCCCcEEEEEecCCccc-------cChhhhcCCcccccccCCCCcHHHH----HHHHHHHhh----hcc---cccChHHH
Q 001808 705 CGIGPIAFVASAQSLEK-------IPQSLTSSGRFDFHVQLPAPAASER----KAILEHEIQ----RRS---LECSDEIL 766 (1010)
Q Consensus 705 ~~~~~v~vIattn~~~~-------L~~~L~r~gRf~~~i~l~~P~~~eR----~~IL~~~l~----~~~---~~~~~~~l 766 (1010)
.-..+|.+|++|+..-. +...|.- |.. ++.+..|...+| .-+.+.++. +.+ ..++.+.+
T Consensus 330 Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~ 406 (511)
T COG3283 330 EVHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLL 406 (511)
T ss_pred eEEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHH
Confidence 22337999999985321 1122211 222 334444443333 233333333 222 23567777
Q ss_pred HhHhhhcCCCChhhHHHHHHHHHHHH
Q 001808 767 LDVASKCDGYDAYDLEILVDRTVHAA 792 (1010)
Q Consensus 767 ~~la~~t~g~s~~DL~~Lv~~A~~~a 792 (1010)
..+.+..---+-+.+.+.+-+|+...
T Consensus 407 ~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 407 TVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 77777655457788888887776543
No 457
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.62 E-value=0.00042 Score=83.62 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 587 l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
+.++..+.|.||+|+|||||++.+++.+.
T Consensus 27 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 27 VYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55667799999999999999999999864
No 458
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00015 Score=82.12 Aligned_cols=101 Identities=22% Similarity=0.219 Sum_probs=65.4
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCC-------------------------cEEEEecchhhhhhhc-----ccHHH
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL-------------------------RFISVKGPELLNKYIG-----ASEQA 925 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~-------------------------~~i~v~~~el~~~~ig-----~se~~ 925 (1010)
+.+..+||+||+|+|||++|+.+|+.+.. +++.+....-. .--| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 44567999999999999999999988621 23444321100 0001 12355
Q ss_pred HHHHHHHHhc----CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 926 VRDIFSKATA----AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 926 l~~lf~~A~~----~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
+|++.+.+.. +...|+++|+++.+ .....+.||+.|+... ...++|+.|.+.
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~a~naLLk~LEep~-~~~~~Ilvth~~ 153 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESM-----------NLQAANSLLKVLEEPP-PQVVFLLVSHAA 153 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhC-----------CHHHHHHHHHHHHhCc-CCCEEEEEeCCh
Confidence 7777776643 34569999999998 4567888999997443 234566655554
No 459
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.61 E-value=0.0029 Score=73.57 Aligned_cols=25 Identities=36% Similarity=0.691 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
+-+||+||+||||||.++.++++++
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhC
Confidence 3489999999999999999999997
No 460
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.61 E-value=0.00013 Score=82.27 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=48.2
Q ss_pred cC-CCCchhhHHHHHHHHhhccCCCcchhccCCCCCCceEEEeCCCCCChHHHHHHHHHHcCC-------cEEEEec
Q 001808 843 WD-DVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSL-------RFISVKG 911 (1010)
Q Consensus 843 ~~-dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~lr~~~~iLL~GppGtGKT~lAk~lA~~~g~-------~~i~v~~ 911 (1010)
++ ++.|+++++..+.+.+..... .. -..+..++|.|||||||||+|++||+.++. +++.+.+
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~-~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GL-EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cC-CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 44 899999998888877653321 11 123467899999999999999999999965 8999988
No 461
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=0.00066 Score=82.52 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
.+.++..+.|.||+|+|||||++.+++.+.
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356667799999999999999999999764
No 462
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.60 E-value=4.8e-05 Score=90.62 Aligned_cols=112 Identities=23% Similarity=0.282 Sum_probs=75.7
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhh-----hcccH-------HHHHHHHHHHhcCCCeEEE
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKY-----IGASE-------QAVRDIFSKATAAAPCLLF 942 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~-----ig~se-------~~l~~lf~~A~~~~p~VLf 942 (1010)
...+|+.|++||||+++|+++.... +.+|+.+++..+-... .|... ..-...|..|. ..+||
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 242 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERAN---EGTLL 242 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECC---CCEEE
Confidence 4689999999999999999998775 5789999987653221 11100 00012334443 34999
Q ss_pred EeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--c-------cCcEEEEEeCCC------CcCCcceEEEecCC
Q 001808 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--V-------LTGVFVFAATRL------EFFHYNVLLFCSFI 1003 (1010)
Q Consensus 943 iDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~-------~~~v~viatTn~------r~gR~d~~l~~~~p 1003 (1010)
|||++.+. ..+...|+..++.-. . ..++.||+||++ ..|+|...+|+.+.
T Consensus 243 ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~ 307 (457)
T PRK11361 243 LDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN 307 (457)
T ss_pred EechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc
Confidence 99999984 446778888886422 1 124789999988 56888887775543
No 463
>PRK04132 replication factor C small subunit; Provisional
Probab=97.60 E-value=0.00018 Score=89.76 Aligned_cols=94 Identities=14% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCceEEEeC--CCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcC------CCeEEEE
Q 001808 877 LRSNVLLYG--PPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAA------APCLLFF 943 (1010)
Q Consensus 877 ~~~~iLL~G--ppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~------~p~VLfi 943 (1010)
|+-+-+..| |++.||||+|.++|+.+ +.+++.+++++..+ -..+|++...+... +..|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 455677778 99999999999999997 56799999988533 12466665543221 3469999
Q ss_pred eCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 944 DEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 944 DEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
||+|.+ +....+.|+..|+ +..+.+.+|.+||.
T Consensus 637 DEaD~L-----------t~~AQnALLk~lE--ep~~~~~FILi~N~ 669 (846)
T PRK04132 637 DEADAL-----------TQDAQQALRRTME--MFSSNVRFILSCNY 669 (846)
T ss_pred ECcccC-----------CHHHHHHHHHHhh--CCCCCeEEEEEeCC
Confidence 999999 3457899999997 44456666666666
No 464
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.59 E-value=6.1e-05 Score=89.48 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=74.1
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhh-----ccc-------HHHHHHHHHHHhcCCCeEEE
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GAS-------EQAVRDIFSKATAAAPCLLF 942 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~i-----g~s-------e~~l~~lf~~A~~~~p~VLf 942 (1010)
..++++.|++||||+++|+++.... +.+|+.+++..+..... |.. .......|..|. ..+||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 238 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAH---GGTLF 238 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECC---CCEEE
Confidence 4579999999999999999999876 46899999876532211 100 001112233343 34999
Q ss_pred EeCCCccCCCCCCCCCcchHHHHHHHHHHhcCcc--cc-------CcEEEEEeCCC------CcCCcceEEEecC
Q 001808 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVE--VL-------TGVFVFAATRL------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 943 iDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e--~~-------~~v~viatTn~------r~gR~d~~l~~~~ 1002 (1010)
|||++.+. ..+...|+..++.-. .. -++-||+||+. ..|+|...+|+.+
T Consensus 239 l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l 302 (445)
T TIGR02915 239 LDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI 302 (445)
T ss_pred EechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh
Confidence 99999984 457788888886321 11 15788888888 3478877665544
No 465
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.59 E-value=0.00016 Score=82.86 Aligned_cols=103 Identities=21% Similarity=0.280 Sum_probs=63.4
Q ss_pred CCCCceEEEeCCCCCChHHHHHHHHHHcCC-cEEEEecchhhh-------hhhcccHHHHHHHHHHHhcCCCeEEEEeCC
Q 001808 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSL-RFISVKGPELLN-------KYIGASEQAVRDIFSKATAAAPCLLFFDEF 946 (1010)
Q Consensus 875 lr~~~~iLL~GppGtGKT~lAk~lA~~~g~-~~i~v~~~el~~-------~~ig~se~~l~~lf~~A~~~~p~VLfiDEi 946 (1010)
..++.|+.|+|++|+|||+|+-+.-..+.. .-.++-..+++. .+.|.. ..+..+-+.. ...-.+|.||||
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~-~~l~~va~~l-~~~~~lLcfDEF 136 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQD-DPLPQVADEL-AKESRLLCFDEF 136 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCC-ccHHHHHHHH-HhcCCEEEEeee
Confidence 456789999999999999999998887743 112222122221 122111 1233333332 233449999998
Q ss_pred CccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCCCc
Q 001808 947 DSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRLEF 991 (1010)
Q Consensus 947 d~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~r~ 991 (1010)
.--- -....++..|+..|- ..||++|||+|+.|
T Consensus 137 ~V~D--------iaDAmil~rLf~~l~----~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 137 QVTD--------IADAMILKRLFEALF----KRGVVLVATSNRPP 169 (362)
T ss_pred eccc--------hhHHHHHHHHHHHHH----HCCCEEEecCCCCh
Confidence 6531 113457777777773 57899999999933
No 466
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.57 E-value=0.00022 Score=85.22 Aligned_cols=101 Identities=16% Similarity=0.298 Sum_probs=59.4
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhh-------hhhhcccH---------HHHHHH-HHHHhc-----
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELL-------NKYIGASE---------QAVRDI-FSKATA----- 935 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~-------~~~ig~se---------~~l~~l-f~~A~~----- 935 (1010)
..-+||+||+|||||++++++|+++|..+.+-..+-.+ ..|.+... .....+ +..++.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~ 124 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSM 124 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccc
Confidence 34678899999999999999999999888875433221 01111110 111222 222221
Q ss_pred ------CCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEe
Q 001808 936 ------AAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAA 986 (1010)
Q Consensus 936 ------~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viat 986 (1010)
..+.||++||+=..+. .+. .+..+.|.+.+...... .++||.|
T Consensus 125 ~g~~~~~~~kvILVEDlPN~~~----~~~---~~f~~~L~~~l~~~~~~-PlV~iiS 173 (519)
T PF03215_consen 125 SGSNSSSNKKVILVEDLPNVFH----RDT---SRFREALRQYLRSSRCL-PLVFIIS 173 (519)
T ss_pred cCCCcCCCceEEEeeccccccc----hhH---HHHHHHHHHHHHcCCCC-CEEEEEe
Confidence 2467999999975542 222 55666666666532211 6777777
No 467
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.57 E-value=0.00032 Score=71.38 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=47.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCC---------------chhhHHHHHHHHHH
Q 001808 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLE---------------KGPIIRQALSNFIS 649 (1010)
Q Consensus 585 ~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~---------------~~~~~~~~l~~~f~ 649 (1010)
+.+.++..+.|.|++|+|||||++.+++.+....+ -+.++...+... ..+..+++ -.+.
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G----~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qr--l~la 94 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG----EILVDGKEVSFASPRDARRAGIAMVYQLSVGERQM--VEIA 94 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe----EEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHH--HHHH
Confidence 34667788999999999999999999987643222 223332222110 01111222 2345
Q ss_pred HHHhcCCeEEEEccchh
Q 001808 650 EALDHAPSIVIFDNLDS 666 (1010)
Q Consensus 650 ~a~~~~PsIL~IDEiD~ 666 (1010)
.+....|.++++||...
T Consensus 95 ral~~~p~illlDEP~~ 111 (163)
T cd03216 95 RALARNARLLILDEPTA 111 (163)
T ss_pred HHHhcCCCEEEEECCCc
Confidence 55667899999999744
No 468
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.57 E-value=0.00022 Score=80.01 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhH-HHHHHHHHHHHHhcCCeEEEEccchh
Q 001808 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII-RQALSNFISEALDHAPSIVIFDNLDS 666 (1010)
Q Consensus 589 ~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~-~~~l~~~f~~a~~~~PsIL~IDEiD~ 666 (1010)
.+.|++|+|++|+|||+|+.++|+++.... ..+.++....+...-.... ...+.+.+... ....+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 346899999999999999999999986332 3345555544332111100 01122333322 4567999999954
No 469
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.57 E-value=0.00086 Score=83.25 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=26.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
.+.++..+.|.||+|+|||||++.+++.+.
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356667799999999999999999999764
No 470
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.57 E-value=0.00059 Score=82.50 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 587 LPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 587 l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
+.++..+.|.||+|+|||||++.+++.+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55566799999999999999999999764
No 471
>PRK15115 response regulator GlrR; Provisional
Probab=97.55 E-value=4.8e-05 Score=90.31 Aligned_cols=114 Identities=23% Similarity=0.312 Sum_probs=76.6
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhhhh-----cccH-------HHHHHHHHHHhcCCCeEEE
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNKYI-----GASE-------QAVRDIFSKATAAAPCLLF 942 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~~i-----g~se-------~~l~~lf~~A~~~~p~VLf 942 (1010)
...++++|++|||||++|+++.... +.+|+.+++..+-.... |... .....+|..|. ..+||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~---~gtl~ 233 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAE---GGTLF 233 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECC---CCEEE
Confidence 3579999999999999999999886 47899999876532211 1100 00112333333 34999
Q ss_pred EeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc---------cCcEEEEEeCCC------CcCCcceEEEecCCCc
Q 001808 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATRL------EFFHYNVLLFCSFIIF 1005 (1010)
Q Consensus 943 iDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~---------~~~v~viatTn~------r~gR~d~~l~~~~p~~ 1005 (1010)
|||+|.+. ..+...|+..|+.-.. .-++.+|+||++ ..|+|...+|+.+...
T Consensus 234 l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~ 300 (444)
T PRK15115 234 LDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 (444)
T ss_pred EEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee
Confidence 99999984 4467778888863221 126788999988 5678887777765543
No 472
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.53 E-value=0.00052 Score=82.67 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
.+.++..+.|.||+|+|||||++.+++.+.
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 49 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQ 49 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 355667799999999999999999998763
No 473
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00022 Score=86.58 Aligned_cols=143 Identities=22% Similarity=0.292 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccc--ccCCchhhHHHHH-HHHHHHHH---hcCCeEEEEccc
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSR--LSLEKGPIIRQAL-SNFISEAL---DHAPSIVIFDNL 664 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~--l~~~~~~~~~~~l-~~~f~~a~---~~~PsIL~IDEi 664 (1010)
-||||.|.||+|||.|.+.+++.+.. -++.+... -.+......+... .+|.-+|- -..++|..|||+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr-------~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEf 392 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPR-------GVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEF 392 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCc-------eEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEec
Confidence 47999999999999999999987642 12222211 1111111111111 11111111 135679999999
Q ss_pred hhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhcc---ccC-CccCCCcEEEEEecCCcc-------------ccChhhh
Q 001808 665 DSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGE---KRK-SSCGIGPIAFVASAQSLE-------------KIPQSLT 727 (1010)
Q Consensus 665 D~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~~---~~~-~~~~~~~v~vIattn~~~-------------~L~~~L~ 727 (1010)
|.+- + .-...+.+.|+...- +.+ ...-.....++|++|+.. .+++.|+
T Consensus 393 dKm~----~-----------~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lL 457 (682)
T COG1241 393 DKMN----E-----------EDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLL 457 (682)
T ss_pred cCCC----h-----------HHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHH
Confidence 9872 1 112234444443221 110 000011345788888855 3678899
Q ss_pred cCCcccccc-cCCCCcHHHHHHHHHHHhhhc
Q 001808 728 SSGRFDFHV-QLPAPAASERKAILEHEIQRR 757 (1010)
Q Consensus 728 r~gRf~~~i-~l~~P~~~eR~~IL~~~l~~~ 757 (1010)
+ ||+..+ -...|+.+.=..|.++.+..+
T Consensus 458 S--RFDLifvl~D~~d~~~D~~ia~hil~~h 486 (682)
T COG1241 458 S--RFDLIFVLKDDPDEEKDEEIAEHILDKH 486 (682)
T ss_pred h--hCCeeEEecCCCCccchHHHHHHHHHHH
Confidence 9 999765 345666654455555554443
No 474
>PLN03073 ABC transporter F family; Provisional
Probab=97.52 E-value=0.0009 Score=83.62 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.5
Q ss_pred CCCCCceEEEeCCCCCChHHHHHHHHHHc
Q 001808 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1010)
Q Consensus 874 ~lr~~~~iLL~GppGtGKT~lAk~lA~~~ 902 (1010)
.+.++..+.|.||+|+|||||+++++...
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll 559 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGEL 559 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34677889999999999999999999875
No 475
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.52 E-value=0.0014 Score=64.93 Aligned_cols=27 Identities=41% Similarity=0.658 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhccC
Q 001808 591 GHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1010)
Q Consensus 591 ~~VLL~GppGtGKTtLaraLA~~L~~~ 617 (1010)
..++++|+||+||||++.-++..|...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 459999999999999999999988644
No 476
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.51 E-value=0.0014 Score=70.98 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=69.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCccchhcccCCCCCce--EEEEcCCCCcHHHHHHHHHHHhccCcceeeeE-EEEeccccc
Q 001808 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGH--ILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHI-VFVCCSRLS 633 (1010)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~--VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~-~~i~~s~l~ 633 (1010)
.|..-+.+-|.+.++...... .|.++ +=|+|++||||+.+++.||+.+.........+ .++....+.
T Consensus 85 fGQHla~~~Vv~alk~~~~n~----------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 85 FGQHLAKQLVVNALKSHWANP----------NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred hchHHHHHHHHHHHHHHhcCC----------CCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 455566777777776654432 12233 56789999999999999999885332211111 122223333
Q ss_pred -CCchhhHHHHHHHH-HHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHHHhhc
Q 001808 634 -LEKGPIIRQALSNF-ISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYG 698 (1010)
Q Consensus 634 -~~~~~~~~~~l~~~-f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~ld~~~ 698 (1010)
....+.-+..++.+ .+.+...+.+++++||+|.+-+ .+++.|.-.+|.+.
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~---------------gLld~lkpfLdyyp 206 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP---------------GLLDVLKPFLDYYP 206 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH---------------hHHHHHhhhhcccc
Confidence 22333334444433 3344556788999999999852 56666666666543
No 477
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.00036 Score=78.59 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=64.0
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCC------------------------cEEEEecchhhhhhhcccHHHHHHHHH
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~------------------------~~i~v~~~el~~~~ig~se~~l~~lf~ 931 (1010)
+.+..+||.||.|+||+++|+.+|+.+-. +++.+...+ ++.+ .-..+|++-+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 34457889999999999999999988622 122222110 1111 2345666555
Q ss_pred HH----hcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 932 KA----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 932 ~A----~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
.+ ..++..|++||++|.+ +....|.||+-|+ |...++++|.+|+.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m-----------~~~AaNaLLKtLE--EPp~~~~fiL~t~~ 146 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL-----------TEAAANALLKTLE--EPRPNTYFLLQADL 146 (325)
T ss_pred HHhhccccCCceEEEEechhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECC
Confidence 44 3345679999999998 5678999999998 55555555555444
No 478
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.50 E-value=0.00069 Score=77.97 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=53.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCch----------hh----HHHHHHHHHHHH
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKG----------PI----IRQALSNFISEA 651 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~----------~~----~~~~l~~~f~~a 651 (1010)
+++++.-++|+|+||+|||+++..+|..+.... ..+.|++...-..... +. .+..+..+++..
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 466667799999999999999999998775332 3466666543111000 00 011234455555
Q ss_pred HhcCCeEEEEccchhhhc
Q 001808 652 LDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~ 669 (1010)
....|.+|+||++..+..
T Consensus 155 ~~~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 155 EELKPDLVIIDSIQTVYS 172 (372)
T ss_pred HhcCCcEEEEcchHHhhc
Confidence 567899999999998863
No 479
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.50 E-value=0.00023 Score=85.24 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh-----hhcccH-------HHHHHHHHHHhcCCCeEEE
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-----YIGASE-------QAVRDIFSKATAAAPCLLF 942 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~-----~ig~se-------~~l~~lf~~A~~~~p~VLf 942 (1010)
...+++.|++|||||++|+++.... +.+|+.+++..+... ..|... ......|..|. ...||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~---~Gtl~ 237 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQAD---GGTLF 237 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECC---CCEEE
Confidence 4579999999999999999999887 468999999775321 111110 00112233333 34899
Q ss_pred EeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccc---------cCcEEEEEeCCC------CcCCcceEEEecC
Q 001808 943 FDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEV---------LTGVFVFAATRL------EFFHYNVLLFCSF 1002 (1010)
Q Consensus 943 iDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~---------~~~v~viatTn~------r~gR~d~~l~~~~ 1002 (1010)
|||++.+. ..+...|+..++.-.. .-.+-||+||+. ..|+|...+|+.+
T Consensus 238 l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l 301 (469)
T PRK10923 238 LDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL 301 (469)
T ss_pred EeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHh
Confidence 99999984 4467788888863221 124688888887 4577766555554
No 480
>PHA00729 NTP-binding motif containing protein
Probab=97.49 E-value=0.00051 Score=72.95 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.6
Q ss_pred eEEEeCCCCCChHHHHHHHHHHcC
Q 001808 880 NVLLYGPPGCGKTHIVGAAAAACS 903 (1010)
Q Consensus 880 ~iLL~GppGtGKT~lAk~lA~~~g 903 (1010)
+++++|+||||||++|.++|..++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999875
No 481
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.49 E-value=0.00082 Score=88.98 Aligned_cols=177 Identities=17% Similarity=0.208 Sum_probs=92.8
Q ss_pred ccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecc--
Q 001808 553 VSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCS-- 630 (1010)
Q Consensus 553 ~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s-- 630 (1010)
+..+.|++..++++...+ ... ....+-+-|+|++|+||||||+++++.+...... .++++..
T Consensus 183 ~~~~vG~~~~l~~l~~lL----~l~---------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~~~~v 246 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLL----HLE---------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFIDRAFI 246 (1153)
T ss_pred cccccchHHHHHHHHHHH----ccc---------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEeecccc
Confidence 446778888777766543 211 2234569999999999999999999887543321 1122210
Q ss_pred -----cccCC----c---hhhHHHHHHH-------------HHHHHHhcCCeEEEEccchhhhcCCCCCCCCCCchhHHH
Q 001808 631 -----RLSLE----K---GPIIRQALSN-------------FISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIA 685 (1010)
Q Consensus 631 -----~l~~~----~---~~~~~~~l~~-------------~f~~a~~~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~ 685 (1010)
..... . ....++.+.+ .+.+....++.+|+|||++.. .
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~-----------------~ 309 (1153)
T PLN03210 247 SKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ-----------------D 309 (1153)
T ss_pred ccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH-----------------H
Confidence 00000 0 0000111111 122223356778999998543 2
Q ss_pred HHHHHHHHHHhhccccCCccCCCcEEEEEecCCccccChhhhcCCcccccccCCCCcHHHHHHHHHHHhhhcccccCh--
Q 001808 686 LTKFLVDIMDEYGEKRKSSCGIGPIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSD-- 763 (1010)
Q Consensus 686 l~~~L~~~ld~~~~~~~~~~~~~~v~vIattn~~~~L~~~L~r~gRf~~~i~l~~P~~~eR~~IL~~~l~~~~~~~~~-- 763 (1010)
..+.+....+.. +.| -.+|.||+..+.+ +....+..++++.|+.++-.+++..++-+.... .+
T Consensus 310 ~l~~L~~~~~~~--------~~G-srIIiTTrd~~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~ 374 (1153)
T PLN03210 310 VLDALAGQTQWF--------GSG-SRIIVITKDKHFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGF 374 (1153)
T ss_pred HHHHHHhhCccC--------CCC-cEEEEEeCcHHHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHH
Confidence 222232221111 111 3455566654332 111345577888999998888888765432211 22
Q ss_pred -HHHHhHhhhcCCCC
Q 001808 764 -EILLDVASKCDGYD 777 (1010)
Q Consensus 764 -~~l~~la~~t~g~s 777 (1010)
+....++..+.|..
T Consensus 375 ~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 375 MELASEVALRAGNLP 389 (1153)
T ss_pred HHHHHHHHHHhCCCc
Confidence 23445677777754
No 482
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00025 Score=77.53 Aligned_cols=85 Identities=25% Similarity=0.448 Sum_probs=57.7
Q ss_pred CCCchhhHHHHHHHHhhccCCCcchhccCCC---CCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhh-hhhc
Q 001808 845 DVGGLTDIQNAIKEMIELPSKFPNIFAQAPL---RLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLN-KYIG 920 (1010)
Q Consensus 845 dI~Gl~~vk~~L~e~i~~~~k~~~~~~~~~l---r~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~-~~ig 920 (1010)
-|.|++++|+.+.=.+.- +|....-.-.+ -.+.++|+.||+|+|||.+|+-+|+..+.||+-+....+-. .|+|
T Consensus 16 yIIGQ~~AKkaVAIALRN--R~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVG 93 (444)
T COG1220 16 YIIGQDEAKKAVAIALRN--RWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVG 93 (444)
T ss_pred HhcCcHHHHHHHHHHHHH--HHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccccc
Confidence 367888988887655431 11111000011 13689999999999999999999999999999998877653 4676
Q ss_pred cc-HHHHHHHHH
Q 001808 921 AS-EQAVRDIFS 931 (1010)
Q Consensus 921 ~s-e~~l~~lf~ 931 (1010)
.. ++-+|++.+
T Consensus 94 rDVesivRDLve 105 (444)
T COG1220 94 RDVESIIRDLVE 105 (444)
T ss_pred ccHHHHHHHHHH
Confidence 54 334454443
No 483
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.47 E-value=0.00073 Score=79.88 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=53.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhH--------------HHHHHHHHHHH
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPII--------------RQALSNFISEA 651 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~--------------~~~l~~~f~~a 651 (1010)
|++++.-++|+|+||+|||+|+..++..+.... ..+.|++.+.......... +..+..+++..
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g---~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAG---GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 466667799999999999999999998775222 4566666544221100000 01234455555
Q ss_pred HhcCCeEEEEccchhhhc
Q 001808 652 LDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 652 ~~~~PsIL~IDEiD~L~~ 669 (1010)
....|.+++||++..+..
T Consensus 153 ~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 153 EEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HhhCCCEEEEechhhhcc
Confidence 567899999999998874
No 484
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.47 E-value=0.00031 Score=75.46 Aligned_cols=66 Identities=26% Similarity=0.369 Sum_probs=52.3
Q ss_pred CceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccC
Q 001808 878 RSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIA 950 (1010)
Q Consensus 878 ~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~ 950 (1010)
..+-.++||.|||||+.++.+|+.+|..++.+++++.++ ...+.++|.-+-. ..+++.|||++.+-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLS 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhh
Confidence 456789999999999999999999999999999988654 3457788877644 36799999999983
No 485
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.46 E-value=0.00075 Score=72.47 Aligned_cols=80 Identities=21% Similarity=0.283 Sum_probs=50.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchh-----------------------hHHH
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGP-----------------------IIRQ 642 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~-----------------------~~~~ 642 (1010)
|++.+.-++|+|+||+|||+++..+|....... ..++++++..+...... +...
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~---~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNG---KKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSE 95 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHH
Confidence 456666799999999999999999998764322 56778887732111111 1111
Q ss_pred HHHHHHHHHHhcCCeEEEEccchhhhc
Q 001808 643 ALSNFISEALDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 643 ~l~~~f~~a~~~~PsIL~IDEiD~L~~ 669 (1010)
.+..+..... ..+.+++||.+..++.
T Consensus 96 ~i~~~~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 96 AIRKAEKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHHHHHHH-hcccEEEEeCcHHHhH
Confidence 1122211111 5788999999998874
No 486
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00027 Score=81.09 Aligned_cols=118 Identities=17% Similarity=0.183 Sum_probs=76.6
Q ss_pred CCceEEEeCCCCCChHHHHHHHHHHc-----CCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCccCC
Q 001808 877 LRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSIAP 951 (1010)
Q Consensus 877 ~~~~iLL~GppGtGKT~lAk~lA~~~-----g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l~~ 951 (1010)
+...++|||+.|+|||+|+++++... ...++.+...+++..++-+...+-.+-|++-- .-.+++||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45689999999999999999999887 34588888888887777665444444555543 445999999999975
Q ss_pred CCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC-----------CcCCcceEE--EecCCCcc
Q 001808 952 KRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL-----------EFFHYNVLL--FCSFIIFL 1006 (1010)
Q Consensus 952 ~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~-----------r~gR~d~~l--~~~~p~~~ 1006 (1010)
+. +......+.|=...+ .++ -||.|+.+ ...||..-+ .+..|+++
T Consensus 190 k~-----~~qeefFh~FN~l~~----~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e 247 (408)
T COG0593 190 KE-----RTQEEFFHTFNALLE----NGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDE 247 (408)
T ss_pred Ch-----hHHHHHHHHHHHHHh----cCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHH
Confidence 42 223344444444443 223 55555555 334555544 44466654
No 487
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=6.8e-05 Score=86.04 Aligned_cols=49 Identities=22% Similarity=0.302 Sum_probs=35.7
Q ss_pred cccccccccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
.+++.++.|...++..+.- .... +.++|++||||||||++++.+...|.
T Consensus 175 ~~D~~DV~GQ~~AKrAlei--AAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEI--AAAG---------------GHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHH--HHhc---------------CCcEEEecCCCCchHHhhhhhcccCC
Confidence 5678888888776554422 1111 36799999999999999998877663
No 488
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.00016 Score=78.99 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCchhhHHH-HHHHHHHHHHhcCCeEEEEccchhh
Q 001808 589 LPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEKGPIIRQ-ALSNFISEALDHAPSIVIFDNLDSI 667 (1010)
Q Consensus 589 ~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~~~~~~~-~l~~~f~~a~~~~PsIL~IDEiD~L 667 (1010)
.+.+++|+||||+|||.||-|++.++. ..+ ..+.++...++...-...... .....+... -....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 457899999999999999999999986 322 556777776654322111110 111111110 134579999999554
No 489
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.012 Score=66.26 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=26.1
Q ss_pred CCCCCCceEEEeCCCCCChHHHHHHHHHHc
Q 001808 873 APLRLRSNVLLYGPPGCGKTHIVGAAAAAC 902 (1010)
Q Consensus 873 ~~lr~~~~iLL~GppGtGKT~lAk~lA~~~ 902 (1010)
.++..-+.+.++||+|+||+|+.+++-..+
T Consensus 608 FGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl 637 (807)
T KOG0066|consen 608 FGIDMDSRIAIVGPNGVGKSTLLKLLIGKL 637 (807)
T ss_pred ccccccceeEEECCCCccHHHHHHHHhcCC
Confidence 456667889999999999999999998776
No 490
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.43 E-value=0.00063 Score=80.64 Aligned_cols=199 Identities=18% Similarity=0.258 Sum_probs=115.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCccchhcccCCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEecccccCCc
Q 001808 557 SWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLSLEK 636 (1010)
Q Consensus 557 ~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~~~~ 636 (1010)
++.+...+...+++..+.... -++|+.|.+||||-.++|++...-. . ...++.++|..+....
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~-------------~pvll~GEtGtGKe~laraiH~~s~-~---~gpfvAvNCaAip~~l 378 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATD-------------LPVLLQGETGTGKEVLARAIHQNSE-A---AGPFVAVNCAAIPEAL 378 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcC-------------CCeEecCCcchhHHHHHHHHHhccc-c---cCCeEEEEeccchHHh
Confidence 467778888888886665443 5699999999999999999988654 2 2678899998765332
Q ss_pred hhh-HHHHHHHHHHHHHh---------cCCeEEEEccchhhhcCCCCCCCCCCchhHHHHHHHHHHHH-HhhccccCCcc
Q 001808 637 GPI-IRQALSNFISEALD---------HAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIM-DEYGEKRKSSC 705 (1010)
Q Consensus 637 ~~~-~~~~l~~~f~~a~~---------~~PsIL~IDEiD~L~~~~~~~~~~~~~~~~~~l~~~L~~~l-d~~~~~~~~~~ 705 (1010)
.++ +-......|..+.. .....||+|||..+- -.....+++.|.+.. ..+....
T Consensus 379 iesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p-----------~~~Qs~LLrVl~e~~v~p~g~~~---- 443 (606)
T COG3284 379 IESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMP-----------LALQSRLLRVLQEGVVTPLGGTR---- 443 (606)
T ss_pred hhHHHhccCccccccchhccccccceecCCCccHHHHhhhch-----------HHHHHHHHHHHhhCceeccCCcc----
Confidence 211 11111111111111 123489999996652 122234444333210 0111111
Q ss_pred CCCcEEEEEecCCccccChhhhcCCcccc---------cccCCCCc-HHHHHHHHHHHhhhc---ccccChHHHHhHhhh
Q 001808 706 GIGPIAFVASAQSLEKIPQSLTSSGRFDF---------HVQLPAPA-ASERKAILEHEIQRR---SLECSDEILLDVASK 772 (1010)
Q Consensus 706 ~~~~v~vIattn~~~~L~~~L~r~gRf~~---------~i~l~~P~-~~eR~~IL~~~l~~~---~~~~~~~~l~~la~~ 772 (1010)
-...|.+|++|+..- ..|.+.|+|-. .|.+|+.. ..++...|.+++.+. .+.++++.+..+...
T Consensus 444 ~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~ 520 (606)
T COG3284 444 IKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAY 520 (606)
T ss_pred eeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhC
Confidence 123688999988532 13444455532 34555542 244555666555543 466788888776665
Q ss_pred cCCCChhhHHHHHHHHHH
Q 001808 773 CDGYDAYDLEILVDRTVH 790 (1010)
Q Consensus 773 t~g~s~~DL~~Lv~~A~~ 790 (1010)
.---+.++|.++++.++.
T Consensus 521 ~WPGNirel~~v~~~~~~ 538 (606)
T COG3284 521 RWPGNIRELDNVIERLAA 538 (606)
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 443478899998887763
No 491
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.43 E-value=0.00091 Score=75.06 Aligned_cols=81 Identities=23% Similarity=0.257 Sum_probs=52.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhccCcceeeeEEEEeccccc----------------CCchhhHHHHHHHHHH
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCCSRLS----------------LEKGPIIRQALSNFIS 649 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~~~~~~~~~~i~~s~l~----------------~~~~~~~~~~l~~~f~ 649 (1010)
|+++++-++|+||||||||+|+..++....... ..+.++++.... -......++.+..+..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g---~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAG---GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 477777899999999999999888776654332 345566654311 1111222333433333
Q ss_pred HHHhcCCeEEEEccchhhhc
Q 001808 650 EALDHAPSIVIFDNLDSIIS 669 (1010)
Q Consensus 650 ~a~~~~PsIL~IDEiD~L~~ 669 (1010)
......+.+++||-+..+.+
T Consensus 128 li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HhhccCCcEEEEcchhhhcc
Confidence 34456789999999999874
No 492
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00071 Score=71.71 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=27.2
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHHhccC
Q 001808 585 YHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHH 617 (1010)
Q Consensus 585 ~~l~~~~~VLL~GppGtGKTtLaraLA~~L~~~ 617 (1010)
+.++.+..+.|.||+||||||+.|.+.+.+...
T Consensus 22 l~I~~gef~vliGpSGsGKTTtLkMINrLiept 54 (309)
T COG1125 22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT 54 (309)
T ss_pred EEecCCeEEEEECCCCCcHHHHHHHHhcccCCC
Confidence 345666779999999999999999998877533
No 493
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.012 Score=68.11 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 001808 585 YHLPLPGHILIHGPPGSGKTSLAKAVAK 612 (1010)
Q Consensus 585 ~~l~~~~~VLL~GppGtGKTtLaraLA~ 612 (1010)
+.+..++..=|+|+.|+|||||.|+||+
T Consensus 101 L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 101 LTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeecccccceeCCCCCcHHHHHHHHHh
Confidence 4456667799999999999999999998
No 494
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.40 E-value=0.00028 Score=77.55 Aligned_cols=73 Identities=18% Similarity=0.329 Sum_probs=58.6
Q ss_pred CCCCceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcC-CCeEEEEeCCCcc
Q 001808 875 LRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAA-APCLLFFDEFDSI 949 (1010)
Q Consensus 875 lr~~~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~-~p~VLfiDEid~l 949 (1010)
.++++|+||+|.+|+||+++++.+|..++..++.+....-++ ..+...+++.++.+|... .+.+++|+|-+-.
T Consensus 28 ~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~ 101 (268)
T PF12780_consen 28 SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKEDLKKALQKAGIKGKPTVFLLTDSQIV 101 (268)
T ss_dssp CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHHHHHHHHHHHCS-S-EEEEEECCCSS
T ss_pred cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHHHHHHHHHHhccCCCeEEEecCcccc
Confidence 367899999999999999999999999999999998765443 455677899999988754 6889999886543
No 495
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.40 E-value=0.001 Score=69.99 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=59.7
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHc-----CCcE-------------EEEecchhhh----hhhcccHHHHHHHHHHH
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAAC-----SLRF-------------ISVKGPELLN----KYIGASEQAVRDIFSKA 933 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~-----g~~~-------------i~v~~~el~~----~~ig~se~~l~~lf~~A 933 (1010)
..+.-++|.||+|+||||+.+.++... |.++ ..+...+-+. .+..+ ...++.+++.+
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~~iL~~~ 101 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLKEIVEKA 101 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHHHHHHhc
Confidence 345678999999999999999998543 4322 1111111111 11111 14577788877
Q ss_pred hcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 934 TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 934 ~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
....|.++++||.-+... ......+...++..+. .. +..+|.+|..
T Consensus 102 ~~~~p~llllDEp~~glD------~~~~~~l~~~ll~~l~---~~-~~tiiivTH~ 147 (199)
T cd03283 102 KKGEPVLFLLDEIFKGTN------SRERQAASAAVLKFLK---NK-NTIGIISTHD 147 (199)
T ss_pred cCCCCeEEEEecccCCCC------HHHHHHHHHHHHHHHH---HC-CCEEEEEcCc
Confidence 656899999999865431 1112334556666663 22 3445555554
No 496
>PRK09087 hypothetical protein; Validated
Probab=97.39 E-value=0.00024 Score=76.28 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=36.6
Q ss_pred ceEEEeCCCCCChHHHHHHHHHHcCCcEEEEecchhhhhhhcccHHHHHHHHHHHhcCCCeEEEEeCCCcc
Q 001808 879 SNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFFDEFDSI 949 (1010)
Q Consensus 879 ~~iLL~GppGtGKT~lAk~lA~~~g~~~i~v~~~el~~~~ig~se~~l~~lf~~A~~~~p~VLfiDEid~l 949 (1010)
..++|+||+|||||+|+++++...+..+ ++..++.. +++..... .+|+|||++.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~ 99 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAAE---GPVLIEDIDAG 99 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhhc---CeEEEECCCCC
Confidence 3589999999999999999998765543 33222211 12222222 38899999976
No 497
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.00056 Score=77.70 Aligned_cols=98 Identities=20% Similarity=0.296 Sum_probs=63.0
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCC------------------------cEEEEecchhhhhhhcccHHHHHHHHH
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL------------------------RFISVKGPELLNKYIGASEQAVRDIFS 931 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~------------------------~~i~v~~~el~~~~ig~se~~l~~lf~ 931 (1010)
+.+..+||+||.|+||+++|.++|..+-. +++.+....- ...+ +-..+|++-+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I--~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSL--GVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cccC--CHHHHHHHHH
Confidence 44557889999999999999999988621 1222221100 0001 1234555554
Q ss_pred H----HhcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 932 K----ATAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 932 ~----A~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
. +..+...|++||++|.+ +....|.||+-|+ |..+++++|-.|+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~ 147 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALL-----------TDAAANALLKTLE--EPPENTWFFLACRE 147 (334)
T ss_pred HHhhccccCCceEEEEcchHhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECC
Confidence 4 34456679999999998 5678999999998 55555555444444
No 498
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.39 E-value=0.00049 Score=74.43 Aligned_cols=30 Identities=40% Similarity=0.536 Sum_probs=26.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHHhc
Q 001808 586 HLPLPGHILIHGPPGSGKTSLAKAVAKSLE 615 (1010)
Q Consensus 586 ~l~~~~~VLL~GppGtGKTtLaraLA~~L~ 615 (1010)
.++.+.-+.|.||.|||||||+|++++.+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356667799999999999999999999875
No 499
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0012 Score=74.36 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=63.6
Q ss_pred CCCceEEEeCCCCCChHHHHHHHHHHcCC-----------------------cEEEEecchhhhhhhcccHHHHHHHHHH
Q 001808 876 RLRSNVLLYGPPGCGKTHIVGAAAAACSL-----------------------RFISVKGPELLNKYIGASEQAVRDIFSK 932 (1010)
Q Consensus 876 r~~~~iLL~GppGtGKT~lAk~lA~~~g~-----------------------~~i~v~~~el~~~~ig~se~~l~~lf~~ 932 (1010)
+.+..+||.||.|+||+++|..+|..+-. +++.+...+ -++.+ .-..+|++-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 44567999999999999999999987621 133332210 00111 12345665544
Q ss_pred H----hcCCCeEEEEeCCCccCCCCCCCCCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 933 A----TAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 933 A----~~~~p~VLfiDEid~l~~~R~~~~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
+ ..++..|++||++|.+ .....|.||+.|+ |...++++|..|+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m-----------~~~AaNaLLKtLE--EPp~~t~fiL~t~~ 147 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAM-----------NESASNALLKTLE--EPAPNCLFLLVTHN 147 (319)
T ss_pred HhhCcccCCceEEEecchhhh-----------CHHHHHHHHHHhc--CCCCCeEEEEEECC
Confidence 4 3345679999999998 4668999999998 55555555554444
No 500
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.37 E-value=0.00061 Score=76.51 Aligned_cols=116 Identities=23% Similarity=0.278 Sum_probs=73.7
Q ss_pred CCCCCceEEEeCCCCCChHHHHHHHHHHc---CCcEEEEecchhhhh-------------hh---cccHHHHHHHHHHHh
Q 001808 874 PLRLRSNVLLYGPPGCGKTHIVGAAAAAC---SLRFISVKGPELLNK-------------YI---GASEQAVRDIFSKAT 934 (1010)
Q Consensus 874 ~lr~~~~iLL~GppGtGKT~lAk~lA~~~---g~~~i~v~~~el~~~-------------~i---g~se~~l~~lf~~A~ 934 (1010)
++..+.-+.++||||||||+||-.++... |..++.++..+-+.. ++ ...++.+..+-..++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 56667788899999999999997766443 677777766442211 01 112333333333345
Q ss_pred cCCCeEEEEeCCCccCCCCCCC------CCcchHHHHHHHHHHhcCccccCcEEEEEeCCC
Q 001808 935 AAAPCLLFFDEFDSIAPKRGHD------NTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL 989 (1010)
Q Consensus 935 ~~~p~VLfiDEid~l~~~R~~~------~~~~~~rv~~~lL~~ldg~e~~~~v~viatTn~ 989 (1010)
...++++++|=+.++.++..-. ..+...|.+.++|..|.+.-...++.+|.|+..
T Consensus 131 s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQv 191 (325)
T cd00983 131 SGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQL 191 (325)
T ss_pred ccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcc
Confidence 5678999999999998742211 112334667777777776656667777777543
Done!