Query 001808
Match_columns 1010
No_of_seqs 431 out of 3575
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 17:11:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001808.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1103-1106//hhsearch_pdb/001808hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 1.0 1 1 637.1 45.3 433 550-1006 200-651 (806)
2 1ypw_A Transitional endoplasmi 1.0 1 1 455.8 26.5 435 550-1007 200-652 (806)
3 4b4t_J 26S protease regulatory 1.0 1 1 318.9 16.3 250 549-826 143-392 (405)
4 3cf2_A TER ATPase, transitiona 1.0 1 1 308.6 25.1 262 550-828 473-748 (806)
5 4b4t_L 26S protease subunit RP 1.0 1 1 306.6 14.4 250 549-826 176-425 (437)
6 4b4t_I 26S protease regulatory 1.0 1 1 306.2 14.0 251 549-827 177-427 (437)
7 4b4t_M 26S protease regulatory 1.0 1 1 305.1 12.6 254 549-830 176-429 (434)
8 4b4t_H 26S protease regulatory 1.0 1 1 303.2 15.9 249 549-825 204-452 (467)
9 4b4t_K 26S protease regulatory 1.0 1 1 301.1 13.4 249 549-825 167-416 (428)
10 4b4t_J 26S protease regulatory 1.0 1 1 295.9 24.1 168 839-1006 143-322 (405)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=637.08 Aligned_cols=433 Identities=31% Similarity=0.509 Sum_probs=387.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 65434443421369999999998-42997310010038999960999857998189999999999425864011699972
Q 001808 550 DSNVSSLSWMGTTASDVINRIKV-LLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~-ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~ 628 (1010)
...+.+++|++.+++++.+.+.. +.. +..|..++..+|+|+|||||||||||++||++|++++ .+++.++
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~---p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~ 270 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRH---PALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLIN 270 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHC---CGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEE
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHCCC---HHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CEEEEEE
T ss_conf 999035149999999999999987519---8988635899997589779899988999999999719------8399997
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35335772256999889999998713990999855222214899999999822599999999999986122357765777
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
|.++.+.+.++.++.++.+|..|.+++|+||||||+|.+++.+....+ .....+...|+..|+.+....
T Consensus 271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~----~~~~riv~~LL~~mdg~~~~~------- 339 (806)
T 3cf2_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG----EVERRIVSQLLTLMDGLKQRA------- 339 (806)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCC----TTHHHHHHHHHTHHHHCCGGG-------
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCCCCC----HHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 379543331678999999999999729929998510023344577887----399999999999974666669-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67999823785565701002896210124899839999999999864023466857888674205898734499999999
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A 788 (1010)
+|++|++||+++.+|++++|+|||+..++++.|+..+|.+||+.++.+.... .+.++..+|..|+||+++||..+|++|
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA 418 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEA 418 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8799996698032698885786361688668979899999999985689988-643899999756899899999999999
Q ss_pred HHHHHHHHCCCCC------CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999872003687------5323456744321256653101223001232346789987767889613499999998624
Q 001808 789 VHAAVGRYLHSDS------SFEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIEL 862 (1010)
Q Consensus 789 ~~~a~~r~~~~~~------~~~~~~~~~Lt~eDf~~Al~~~~P~slr~v~~~~~~~~~~~~~dIgGl~~vk~~L~e~ie~ 862 (1010)
.+.|..|...... .........++.+||..|+..+.|+.+++.....+. +.|++++|++++++.|.+.+.|
T Consensus 419 ~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~---v~w~diggl~~~k~~l~e~v~~ 495 (806)
T 3cf2_A 419 ALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQ---VTWEDIGGLEDVKRELQELVQY 495 (806)
T ss_dssp HHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCC---CCSTTCCSCHHHHHHHTTTTTT
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCC---CCHHHHCCHHHHHHHHHHHHHH
T ss_conf 9999984145120001332045522556519999999972878311234445788---7888817889999999999975
Q ss_pred CCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 67883001028977775189969999971799999999839828998350133441044388999999997609992999
Q 001808 863 PSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLF 942 (1010)
Q Consensus 863 p~k~~~~f~~~plr~~~~iLL~GppGtGKT~LAkaiA~~~g~~fi~v~~~el~~kyiG~se~~ir~if~~A~~~~p~VLf 942 (1010)
|.++++.|.+.+++++.|+|||||||||||++|+++|.+++.+|+.+++++++++|+|++|++++++|..|+..+|||||
T Consensus 496 p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~Iif 575 (806)
T 3cf2_A 496 PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLF 575 (806)
T ss_dssp TTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEECCCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 66689999714888886079866877896399999999838966874241121033436899999999999972996352
Q ss_pred EECCCCCCCCCCC---CCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC---------CCCCCCEEEEECCCCCC
Q ss_conf 9088854878899---9975117999999998029534695899992899---------95795428993389841
Q 001808 943 FDEFDSIAPKRGH---DNTGVTDRVVNQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 943 iDEidsl~p~Rg~---~~~~v~~rvv~~LL~~Ldg~e~~~~v~ViatTn~---------r~gr~d~~i~~~~p~~~ 1006 (1010)
|||+|+++++|+. ++.++.+|++++||++|||++..++|+||||||+ ||||||++||+++|+.+
T Consensus 576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~ 651 (806)
T 3cf2_A 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp CSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----C
T ss_pred CHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHH
T ss_conf 0425677631588888986699999999999974878779989999379804389847177855079997996999
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=1.00 E-value=1 Score=455.81 Aligned_cols=435 Identities=31% Similarity=0.493 Sum_probs=371.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 65434443421369999999998429973100100389999609998579981899999999994258640116999723
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~~ 629 (1010)
...+.+++|.+.+++.+.+.+...+. .+.+|..+++.++.++||+||||||||++++++++.++ ..++.++|
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~--~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~------~~~i~v~~ 271 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLR--HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLING 271 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHH--CGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT------CEEEEEEH
T ss_pred CCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCC------CCEEEEEC
T ss_conf 89988828809999999999998742--98999863889997389989399987999999999719------96899975
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 53357722569998899999987139909998552222148999999998225999999999999861223577657776
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
..+.+...+.....+..+|+.+....|+++|+||+|.+.+.+... .......+...|..+++..... ..
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~----~~~~~~~~~~~Ll~ll~g~~~~-------~~ 340 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT----HGEVERRIVSQLLTLMDGLKQR-------AH 340 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC----CSHHHHHHHHHHHHHHHSSCTT-------SC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHCCCCC----CCHHHHHHHHHHHHHHHHHCCC-------CC
T ss_conf 576544101589999999999986499579830077751114666----3168899999999986541146-------61
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 79998237855657010028962101248998399999999998640234668578886742058987344999999999
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A~ 789 (1010)
+++|+++|.++.+++.+.+++||...+.++.|+.++|.+|++.++...... .+..+..++..++||+++|+..++..+.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~ 419 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAA 419 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 787602398100499986465544435569999999999999987338776-2200677777614753689999999999
Q ss_pred HHHHHHHCCCCCC------CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9998720036875------3234567443212566531012230012323467899877678896134999999986246
Q 001808 790 HAAVGRYLHSDSS------FEKHIKPTLVRDDFSQAMHEFLPVAMRDITKTSAEGGRSGWDDVGGLTDIQNAIKEMIELP 863 (1010)
Q Consensus 790 ~~a~~r~~~~~~~------~~~~~~~~Lt~eDf~~Al~~~~P~slr~v~~~~~~~~~~~~~dIgGl~~vk~~L~e~ie~p 863 (1010)
..+..+....... ........++.+||..++....|...+......+ ...|++++|++++++.+.+.+.++
T Consensus 420 ~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~---~v~~~di~gl~~vk~~l~~~v~~~ 496 (806)
T 1ypw_A 420 LQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVP---QVTWEDIGGLEDVKRELQELVQYP 496 (806)
T ss_dssp HHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCC---CCSSCSSSCCCCHHHHHHTTTTSS
T ss_pred HHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCC---CCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99876420101155420101244455555665311112357144420002575---421111244302222189999755
Q ss_pred CCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 78830010289777751899699999717999999998398289983501334410443889999999976099929999
Q 001808 864 SKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKATAAAPCLLFF 943 (1010)
Q Consensus 864 ~k~~~~f~~~plr~~~~iLL~GppGtGKT~LAkaiA~~~g~~fi~v~~~el~~kyiG~se~~ir~if~~A~~~~p~VLfi 943 (1010)
.+++..|.+.+++++.++||+||||||||++|+++|.+++.+|+.++++++.++|+|+++..++.+|+.|+...|||+||
T Consensus 497 ~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~i 576 (806)
T 1ypw_A 497 VEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFF 576 (806)
T ss_dssp SSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCC
T ss_pred HHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 53639897548887753689779998789999999998489879986167655305754788999999987069859999
Q ss_pred ECCCCCCCCCCCCC---CCCHHHHHHHHHHHHCCCCCCCCEEEEEECCC---------CCCCCCEEEEECCCCCCE
Q ss_conf 08885487889999---75117999999998029534695899992899---------957954289933898413
Q 001808 944 DEFDSIAPKRGHDN---TGVTDRVVNQFLTELDGVEVLTGVFVFAATRL---------EFFHYNVLLFCSFIIFLI 1007 (1010)
Q Consensus 944 DEidsl~p~Rg~~~---~~v~~rvv~~LL~~Ldg~e~~~~v~ViatTn~---------r~gr~d~~i~~~~p~~~~ 1007 (1010)
||+|+++++|+... .+..++++++||++||+.....+++||+|||+ |||||++.+++++|+.+.
T Consensus 577 DEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~ 652 (806)
T 1ypw_A 577 DELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp SSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSH
T ss_pred ECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCHHH
T ss_conf 8744542112687777641689999999998754566687699984387122798783765567305559979999
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=318.85 Aligned_cols=250 Identities=22% Similarity=0.344 Sum_probs=215.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 66543444342136999999999842997310010038999960999857998189999999999425864011699972
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~ 628 (1010)
.+.++.+++|++.+++++.+.+...+. .+.+|..+++++|+|+|||||||||||++|+++|++++ .+++.++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~--~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~ 214 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVK--HPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVS 214 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC------CCCEEEE
T ss_conf 999888828889999999999999874--99999867999888258858999987899999998518------8852888
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35335772256999889999998713990999855222214899999999822599999999999986122357765777
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++.+...+.|+.++.++.+|..|..++|+||||||+|.+++.+....+.. ..........|+..||.+....
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~~~------- 286 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGG-DSEVQRTMLELLNQLDGFETSK------- 286 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGG-GGHHHHHHHHHHHHHHTTTCCC-------
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 68951133546899999999999870994676533411115778889997-6899999999999604338888-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67999823785565701002896210124899839999999999864023466857888674205898734499999999
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A 788 (1010)
+|++|++||+++.+|++++|+|||+..++++.|+.++|.+||+.++++..+. .+.++..+|..|+||+++||..+|..|
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA 365 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEA 365 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 7578812698144899672877676699769969999999999985599999-657999999877999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 99998720036875323456744321256653101223
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~Lt~eDf~~Al~~~~P~ 826 (1010)
...|+++ ....++.+||..|+....+.
T Consensus 366 ~~~Air~-----------~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 366 GMYALRE-----------RRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHT-----------TCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-----------CCCCCCHHHHHHHHHHHHCC
T ss_conf 9999986-----------99875999999999998572
No 4
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=1.00 E-value=1 Score=308.64 Aligned_cols=262 Identities=21% Similarity=0.302 Sum_probs=214.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 65434443421369999999998429973100100389999609998579981899999999994258640116999723
Q 001808 550 DSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVCC 629 (1010)
Q Consensus 550 ~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~~ 629 (1010)
...+..++|++..++.+.+.+ .+....+..|...+..+++++|||||||||||++|+++|.+++ ..++.++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v--~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~------~~f~~v~~ 544 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELV--QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKG 544 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTT--TTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT------CEEEECCH
T ss_pred CCCHHHHCCHHHHHHHHHHHH--HHHHHCHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC------CCEEEECC
T ss_conf 878888178899999999999--7566689999714888886079866877896399999999838------96687424
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 53357722569998899999987139909998552222148999999998225999999999999861223577657776
Q 001808 630 SRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIGP 709 (1010)
Q Consensus 630 s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~~ 709 (1010)
+++...+.++.++.++.+|..|+..+|+||||||+|.+++.+....+. ......++...|+..||.+.... +
T Consensus 545 ~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~-~~~~~~rv~~~lL~~mdg~~~~~-------~ 616 (806)
T 3cf2_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD-GGGAADRVINQILTEMDGMSTKK-------N 616 (806)
T ss_dssp HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------------CHHHHHHHHHHHSSCSSS-------S
T ss_pred CHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC-------C
T ss_conf 112103343689999999999997299635204256776315888889-86699999999999974878779-------9
Q ss_pred EEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 79998237855657010028962101248998399999999998640234668578886742058987344999999999
Q 001808 710 IAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRTV 789 (1010)
Q Consensus 710 V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A~ 789 (1010)
|++|++||.++.+|++++|+|||+..++++.|+.++|.+||+.++++..+. .+.++..+|..|+||+++||..+|+.|.
T Consensus 617 V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 617 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRAC 695 (806)
T ss_dssp EEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHH
T ss_pred EEEEEECCCCHHCCHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 899993798043898471778550799979969999999999985679998-7789999997689999999999999999
Q ss_pred HHHHHHHCCCCCC--------------CCCCCCCCCCCCCHHHHHHCCCCCCC
Q ss_conf 9998720036875--------------32345674432125665310122300
Q 001808 790 HAAVGRYLHSDSS--------------FEKHIKPTLVRDDFSQAMHEFLPVAM 828 (1010)
Q Consensus 790 ~~a~~r~~~~~~~--------------~~~~~~~~Lt~eDf~~Al~~~~P~sl 828 (1010)
..|+++....... ......+.++++||.+|+....|+..
T Consensus 696 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs 748 (806)
T 3cf2_A 696 KLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 748 (806)
T ss_dssp HHHHHHHHC-----------------------CCC----CCTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999999856444333015741001233456686479999999986799999
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=306.63 Aligned_cols=250 Identities=20% Similarity=0.284 Sum_probs=214.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 66543444342136999999999842997310010038999960999857998189999999999425864011699972
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~ 628 (1010)
.+.++.+++|++.+++++.+.+...+. .+.+|..+++++|+|+|||||||||||++|+++|++++ .+++.++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~--~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~ 247 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLK--NPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSP 247 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEEE
T ss_conf 998966717859999999999999874--99999867989787699989999849999999999859------9989984
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35335772256999889999998713990999855222214899999999822599999999999986122357765777
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++.+...+.+...+.+..+|..|..++|+||||||+|.+++.+....... ..........|+..+|.+....
T Consensus 248 ~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~-~~~~~~~l~~lL~~lDg~~~~~------- 319 (437)
T 4b4t_L 248 ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSA-DREIQRTLMELLTQMDGFDNLG------- 319 (437)
T ss_dssp GGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSS-TTHHHHHHHHHHHHHHSSSCTT-------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 14620552017899999999999863896464204433333334478875-3689999999999834666779-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67999823785565701002896210124899839999999999864023466857888674205898734499999999
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A 788 (1010)
.+++|+|||+++.+|++++|+|||+..|+++.|+.++|.+||+.++.+.... .+.++..+|..|+||+++||..+|..|
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA 398 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEA 398 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHHCHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 8699993399033189782777102001359969999999999986589998-645899999768999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCC
Q ss_conf 99998720036875323456744321256653101223
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPV 826 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~Lt~eDf~~Al~~~~P~ 826 (1010)
...|+.+ ....++.+||..|+....|.
T Consensus 399 ~~~air~-----------~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 399 GFFAIRD-----------DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp HHHHHHT-----------TCSSBCHHHHHHHHHHHHHT
T ss_pred HHHHHHC-----------CCCCCCHHHHHHHHHHHHHC
T ss_conf 9999986-----------99877999999999998750
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=306.16 Aligned_cols=251 Identities=20% Similarity=0.289 Sum_probs=215.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 66543444342136999999999842997310010038999960999857998189999999999425864011699972
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~ 628 (1010)
.+.++.+++|++.+++++.+.+...+. .+.+|..+++++|+|+|||||||||||++|+++|.+++ ..++.++
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~--~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~ 248 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLT--HPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIV 248 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHH--CCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCCEECCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHHHC------CCEEEEE
T ss_conf 998600557699999999999999876--99999867999777884488999639999999999859------9879988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35335772256999889999998713990999855222214899999999822599999999999986122357765777
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++.+...+.++.++.++.+|..|...+|+||||||+|.+++.+......... ........|+..+|......
T Consensus 249 ~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~-~~~~~l~~LL~~lDg~~~~~------- 320 (437)
T 4b4t_I 249 GSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER-EIQRTMLELLNQLDGFDDRG------- 320 (437)
T ss_dssp SGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCC-HHHHHHHHHHHHHHHCCCSS-------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHHCCCCCC-------
T ss_conf 7995314476699999999999986599189876122203667788877658-99999999999724767889-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67999823785565701002896210124899839999999999864023466857888674205898734499999999
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A 788 (1010)
++++|+|||+++.+|++++|+|||+..|+++.|+.++|.+||+.++.+..+. .+.++..+|..|+||+++||..+|..|
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA 399 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEA 399 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9799995798055599886488602799808969999999999996489999-767999999767999899999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 999987200368753234567443212566531012230
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVA 827 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~Lt~eDf~~Al~~~~P~s 827 (1010)
...|+++ ....++.+||..|+....|..
T Consensus 400 ~~~Air~-----------~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 400 GLLALRE-----------RRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHT-----------TCSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHC-----------CCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999984-----------899669999999999870798
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=305.08 Aligned_cols=254 Identities=20% Similarity=0.302 Sum_probs=216.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 66543444342136999999999842997310010038999960999857998189999999999425864011699972
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~ 628 (1010)
...++.+++|++.+++++.+.+...+. .+.+|..+++++|+|+|||||||||||++|+++|++++ .+++.++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~--~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~ 247 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMK--RADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN------ATFLKLA 247 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHH--CSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHCCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEEE
T ss_conf 799867609579999999999999974--99999867999887268779499988999999999959------9889986
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35335772256999889999998713990999855222214899999999822599999999999986122357765777
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++.+...+.+...+.++.+|..|..++|+||||||+|.+++.+........ .........|+..++.+....
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~-~~~~~~~~~lL~~ldg~~~~~------- 319 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGD-REVQRTMLELLNQLDGFSSDD------- 319 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTT-HHHHHHHHHHHHHHTTSCSSC-------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 446431345638999999999998619908960332566522577888874-699999999999713668889-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67999823785565701002896210124899839999999999864023466857888674205898734499999999
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A 788 (1010)
+|++|+|||+++.+|+++.|+|||+..++++.|+.++|.+||+.++++.... .+..+..+|..|+||+++||..+|..|
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA 398 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEA 398 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CEEEEEECCCCHHCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9899994899223399671577403899808959999999999985689998-767999999868998999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 999987200368753234567443212566531012230012
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLPVAMRD 830 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~Lt~eDf~~Al~~~~P~slr~ 830 (1010)
...|+++ ....++.+||..|+....|...+.
T Consensus 399 ~~~a~r~-----------~~~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 399 GMIALRN-----------GQSSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp HHHHHHH-----------TCSSBCHHHHHHHHHSCSSSCCCC
T ss_pred HHHHHHC-----------CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999986-----------998769999999999973777757
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=303.17 Aligned_cols=249 Identities=20% Similarity=0.250 Sum_probs=211.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 66543444342136999999999842997310010038999960999857998189999999999425864011699972
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~ 628 (1010)
.+.++.+++|++.+++++.+.+...+. .+.+|..+++++|+|+|||||||||||++|+++|++++ .+++.++
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~--~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs 275 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLL--SPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVI 275 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHH--CHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHC--CHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCC------CCEEEEE
T ss_conf 999878854599999999999998842--99999877999998147648999809999999984468------9869988
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35335772256999889999998713990999855222214899999999822599999999999986122357765777
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++.+...+.+..++.++.+|..|..++|+||||||+|.+++.+...... ...........|+..++......
T Consensus 276 ~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~-~~~~~~~~l~~lL~~lDg~~~~~------- 347 (467)
T 4b4t_H 276 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAG-GDNEVQRTMLELITQLDGFDPRG------- 347 (467)
T ss_dssp GGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCG-GGGHHHHHHHHHHHHHHSSCCTT-------
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 6995026677899999999999876178467522321101355676778-62789999999999865557888-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67999823785565701002896210124899839999999999864023466857888674205898734499999999
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLPAPAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDRT 788 (1010)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~rf~~~i~l~~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~A 788 (1010)
.|++|++||+++.+|++++|+|||+..++++.|+.++|.+||+.++++..+. .+..+..+|..|+||+++||..+|..|
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA 426 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEA 426 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 3798828789311795463666550799838969999999999985489998-777999999777999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 9999872003687532345674432125665310122
Q 001808 789 VHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 789 ~~~a~~r~~~~~~~~~~~~~~~Lt~eDf~~Al~~~~P 825 (1010)
...|+++ ....++.+||..|+....+
T Consensus 427 a~~Air~-----------~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 427 GMFAIRA-----------RRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHHHHHH-----------TCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHC-----------CCCCCCHHHHHHHHHHHHC
T ss_conf 9999983-----------8876699999999999964
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=301.06 Aligned_cols=249 Identities=20% Similarity=0.294 Sum_probs=213.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 66543444342136999999999842997310010038999960999857998189999999999425864011699972
Q 001808 549 FDSNVSSLSWMGTTASDVINRIKVLLSPDSGLWFSTYHLPLPGHILIHGPPGSGKTSLAKAVAKSLEHHKDLVAHIVFVC 628 (1010)
Q Consensus 549 ~~~~~~~l~g~~~~~~~i~~~l~~ll~~~~~~~~~~~~l~~p~~iLL~GppGtGKTtLaralA~~L~~~~~~~~~v~~i~ 628 (1010)
.+.++.+++|++.+++.+.+.+...+. .+.+|..+++++|+|+|||||||||||++|+++|++++ .+++.++
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~--~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~ 238 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLV--QADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVN 238 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHH--CHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEE
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHH--CHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHC------CCEEEEE
T ss_conf 999888851699999999999999873--99999867999886588889899888999999999867------9969993
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 35335772256999889999998713990999855222214899999999822599999999999986122357765777
Q 001808 629 CSRLSLEKGPIIRQALSNFISEALDHAPSIVIFDNLDSIISSSSDPEGSQPSTSVIALTKFLVDIMDEYGEKRKSSCGIG 708 (1010)
Q Consensus 629 ~s~l~~~~~~~~~~~l~~~f~~a~~~~PsILiLDEiD~L~~~~~~~e~~~~~~~~~~l~~~L~~~ld~~~~~~~~~~~~~ 708 (1010)
++.+...+.+...+.++.+|..|..++|+|+||||+|.+++.+........ ....++...|+..+|++....
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~-~~~~r~l~~lL~~ldg~~~~~------- 310 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSD-REVQRILIELLTQMDGFDQST------- 310 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCC-CHHHHHHHHHHHHHHHSCSSC-------
T ss_pred CCHHHCCCCCHHHHHHHHHHHHHHHCCCCEEECHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHCCCCCC-------
T ss_conf 304431454605999999999999739974630022433035567878887-189999999999843878779-------
Q ss_pred CEEEEEECCCCCCCCHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 6799982378556570100289621012489-983999999999986402346685788867420589873449999999
Q 001808 709 PIAFVASAQSLEKIPQSLTSSGRFDFHVQLP-APAASERKAILEHEIQRRSLECSDEILLDVASKCDGYDAYDLEILVDR 787 (1010)
Q Consensus 709 ~V~vIattn~~~~L~~~L~s~~rf~~~i~l~-~Pd~~eR~~IL~~~l~~~~~~~~~~~l~~La~~t~Gys~~DL~~Lv~~ 787 (1010)
++++|+|||+++.+|++++|+|||+..|++| .|+.++|.+|++.++.+..+. .+.++..+|..|+||+++||..+|+.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~e 389 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQE 389 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CEEEEEECCCHHHCCHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 97999961981556966636875159998199999999999999985579999-63589999977799889999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCC
Q ss_conf 99999872003687532345674432125665310122
Q 001808 788 TVHAAVGRYLHSDSSFEKHIKPTLVRDDFSQAMHEFLP 825 (1010)
Q Consensus 788 A~~~a~~r~~~~~~~~~~~~~~~Lt~eDf~~Al~~~~P 825 (1010)
|...|+++ ....++.+||..|+....+
T Consensus 390 A~~~a~r~-----------~~~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 390 AGLRAVRK-----------NRYVILQSDLEEAYATQVK 416 (428)
T ss_dssp HHHHHHHT-----------TCSSBCHHHHHHHHHHHSC
T ss_pred HHHHHHHC-----------CCCCCCHHHHHHHHHHHHC
T ss_conf 99999987-----------9987799999999997617
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=295.86 Aligned_cols=168 Identities=36% Similarity=0.556 Sum_probs=160.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHH
Q ss_conf 98776788961349999999862467883001028977775189969999971799999999839828998350133441
Q 001808 839 GRSGWDDVGGLTDIQNAIKEMIELPSKFPNIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKY 918 (1010)
Q Consensus 839 ~~~~~~dIgGl~~vk~~L~e~ie~p~k~~~~f~~~plr~~~~iLL~GppGtGKT~LAkaiA~~~g~~fi~v~~~el~~ky 918 (1010)
+.+.|+||||++++++.|.+.++||+++|++|.+.+++++.|+|||||||||||++|+++|.+++.+|+.++++++.++|
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~ 222 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY 222 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred CCCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHCCC
T ss_conf 99988882888999999999999987499999867999888258858999987899999998518885288868951133
Q ss_pred HCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC---CHHHHHHHHHHHHCCCCCCCCEEEEEECCC------
Q ss_conf 04438899999999760999299990888548788999975---117999999998029534695899992899------
Q 001808 919 IGASEQAVRDIFSKATAAAPCLLFFDEFDSIAPKRGHDNTG---VTDRVVNQFLTELDGVEVLTGVFVFAATRL------ 989 (1010)
Q Consensus 919 iG~se~~ir~if~~A~~~~p~VLfiDEidsl~p~Rg~~~~~---v~~rvv~~LL~~Ldg~e~~~~v~ViatTn~------ 989 (1010)
+|+++..+|++|..|+..+||||||||+|+++++|+.++++ ...+++++||++|||++..++|+||||||+
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDp 302 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDP 302 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHCCH
T ss_conf 54689999999999987099467653341111577888999768999999999996043388887578812698144899
Q ss_pred ---CCCCCCEEEEECCCCCC
Q ss_conf ---95795428993389841
Q 001808 990 ---EFFHYNVLLFCSFIIFL 1006 (1010)
Q Consensus 990 ---r~gr~d~~i~~~~p~~~ 1006 (1010)
||||||+.|++++|+.+
T Consensus 303 AllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 303 ALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp HHHSTTSSCCEEECCCCCHH
T ss_pred HHCCCCCCCEEEECCCCCHH
T ss_conf 67287767669976996999
Done!