BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001809
         (1010 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WMH|A Chain A, Crystal Structure Of A Pb1 Domain Complex Of Protein
           Kinase C Iota And Par6 Alpha
 pdb|1VD2|A Chain A, Solution Structure Of The Pb1 Domain Of Pkciota
          Length = 89

 Score = 37.0 bits (84), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 899 IGSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQN-GTFQLKYLDDEEEWVMLV 957
           +GS++ VKA Y+ DI+   F+PS     L  EV       N   F +K++D+E +   + 
Sbjct: 3   LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVS 62

Query: 958 SDSDLQECFDILE 970
           S  +L+E F + E
Sbjct: 63  SQLELEEAFRLYE 75


>pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY3|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY3|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY3|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY3|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY3|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY4|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY4|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY4|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY4|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY4|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
 pdb|2ZY4|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
          Length = 546

 Score = 30.8 bits (68), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 237 LPGRVFSSKVPEWTSNVAYYNEAEYARVTHAVNHAVRSCIALPVFQFPEISCSAVLE 293
           LPGR F S  P   +++A  NE EYA +  A+        A    Q   +  +A LE
Sbjct: 484 LPGRGFGSNRPSGRASLANLNEYEYAAIGRALRKMADELYAEYSGQAQNLKLAAALE 540


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,327,735
Number of Sequences: 62578
Number of extensions: 1125014
Number of successful extensions: 2215
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2213
Number of HSP's gapped (non-prelim): 11
length of query: 1010
length of database: 14,973,337
effective HSP length: 108
effective length of query: 902
effective length of database: 8,214,913
effective search space: 7409851526
effective search space used: 7409851526
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)