Query 001809
Match_columns 1010
No_of_seqs 261 out of 356
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 15:50:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001809.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1107-1111//hhsearch_pdb/001809hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vd2_A Protein kinase C, IOTA 1.0 1 1 109.8 11.1 84 900-983 4-88 (89)
2 1q1o_A Cell division control p 1.0 1 1 84.3 9.6 82 901-982 4-98 (98)
3 2ktr_A Sequestosome-1; autopha 1.0 1 1 80.4 8.7 81 900-983 18-116 (117)
4 1wj6_A KIAA0049 protein, RSGI 1.0 1 1 80.1 9.0 80 901-983 13-94 (101)
5 2kkc_A Sequestosome-1; P62, PB 1.0 1 1 79.2 8.7 80 901-983 4-101 (102)
6 2bkf_A Zinc-finger protein NBR 1.0 1 1 78.1 10.3 80 901-983 5-86 (87)
7 1wmh_B Partitioning defective- 1.0 1 1 72.1 6.6 80 900-983 4-85 (86)
8 1pqs_A Cell division control p 1.0 1 1 67.8 7.5 71 911-981 1-76 (77)
9 1oey_A P67-PHOX, neutrophil cy 1.0 1 1 62.3 8.9 78 901-983 4-82 (83)
10 1ip9_A BEM1 protein; ubiquitin 1.0 1 1 58.0 6.3 75 901-984 11-85 (85)
No 1
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=1.00 E-value=1 Score=109.78 Aligned_cols=84 Identities=30% Similarity=0.428 Sum_probs=77.4
Q ss_pred CCEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCC-EEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 97199999828972999947996768999999988074466-26667523999959980478389999998570997499
Q 001809 900 GSKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNG-TFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVR 978 (1010)
Q Consensus 900 ~~~~tVKAty~ed~iRF~~~~s~g~~~L~~EIakRf~ld~~-~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~s~~~~vk 978 (1010)
+.+++|||.|.+|++||+++++-.|.+|+++|..||++..+ .|.|||.|+|++||.|+.|.||+|++.+++..+...+.
T Consensus 4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~ 83 (89)
T 1vd2_A 4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELL 83 (89)
T ss_dssp SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEE
T ss_pred CCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 87189999947859999879998999999999999688989827999998997950334889999999998705787789
Q ss_pred EEEEE
Q ss_conf 99730
Q 001809 979 FLVRD 983 (1010)
Q Consensus 979 l~V~d 983 (1010)
|.|..
T Consensus 84 ihvf~ 88 (89)
T 1vd2_A 84 IHVFP 88 (89)
T ss_dssp EEEEE
T ss_pred EEECC
T ss_conf 99736
No 2
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=1.00 E-value=1 Score=84.29 Aligned_cols=82 Identities=17% Similarity=0.316 Sum_probs=73.6
Q ss_pred CEEEEEEECC--------CCEEEEEECCCCCHHHHHHHHHHHCCCC---C--CEEEEEEECCCCCEEEEECCCCHHHHHH
Q ss_conf 7199999828--------9729999479967689999999880744---6--6266675239999599804783899999
Q 001809 901 SKIIVKATYK--------EDIIRFKFDPSAGCFQLYEEVARRLKLQ---N--GTFQLKYLDDEEEWVMLVSDSDLQECFD 967 (1010)
Q Consensus 901 ~~~tVKAty~--------ed~iRF~~~~s~g~~~L~~EIakRf~ld---~--~~f~lKYlDDd~EWVlLtcDaDL~EC~d 967 (1010)
++++||..|+ +|++-+.+++++.|.+|.+.|.+||++. + +.+.|||.|+|+++|.|.+|.||+-+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e 83 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKE 83 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCHHHHHHHHH
T ss_conf 51899999357656666686799996699989999999999976786545465047999969999887728899999999
Q ss_pred HHHHHCCCEEEEEEE
Q ss_conf 985709974999973
Q 001809 968 ILESLGKRSVRFLVR 982 (1010)
Q Consensus 968 i~~~s~~~~vkl~V~ 982 (1010)
.++....+.+.+-|.
T Consensus 84 ~~~e~~~~~l~Iwv~ 98 (98)
T 1q1o_A 84 MLAENNEKFLNIRLY 98 (98)
T ss_dssp HHHHTTCCEEEEEEC
T ss_pred HHHHHHCCEEEEEEC
T ss_conf 977510570899979
No 3
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=1.00 E-value=1 Score=80.35 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=71.0
Q ss_pred CCEEEEEEECC------CCEEEEEECC-----------CCCHHHHHHHHHHHC-CCCCCEEEEEEECCCCCEEEEECCCC
Q ss_conf 97199999828------9729999479-----------967689999999880-74466266675239999599804783
Q 001809 900 GSKIIVKATYK------EDIIRFKFDP-----------SAGCFQLYEEVARRL-KLQNGTFQLKYLDDEEEWVMLVSDSD 961 (1010)
Q Consensus 900 ~~~~tVKAty~------ed~iRF~~~~-----------s~g~~~L~~EIakRf-~ld~~~f~lKYlDDd~EWVlLtcDaD 961 (1010)
+..++|||-+. .|+.||.+.. ...|..|++.|.++| .|....|.|||.|.|++.|.+++|.+
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDeE 97 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEE 97 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHH
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCHHH
T ss_conf 45289999980677788727998842677743112456777999999999973455898389999989999897638899
Q ss_pred HHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 8999999857099749999730
Q 001809 962 LQECFDILESLGKRSVRFLVRD 983 (1010)
Q Consensus 962 L~EC~di~~~s~~~~vkl~V~d 983 (1010)
|++++...+ -.++||+|..
T Consensus 98 L~~Al~~~~---~~~lRlyVke 116 (117)
T 2ktr_A 98 LTMAMSYVK---DDIFRIYIKE 116 (117)
T ss_dssp HHHHHHHCC---SSEEEEEEEE
T ss_pred HHHHHHHCC---CCEEEEEEEE
T ss_conf 999998337---8818999982
No 4
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=80.06 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=72.8
Q ss_pred CEEEEEEECCCCEEEEEECC--CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 71999998289729999479--9676899999998807446626667523999959980478389999998570997499
Q 001809 901 SKIIVKATYKEDIIRFKFDP--SAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVR 978 (1010)
Q Consensus 901 ~~~tVKAty~ed~iRF~~~~--s~g~~~L~~EIakRf~ld~~~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~s~~~~vk 978 (1010)
..+++|++|++|+.||.+.- ...|.+|..-|-..|+|. .|+|||+|+|+|-|.++.|++++|++-|++..+ +.++
T Consensus 13 ~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k~~-n~L~ 89 (101)
T 1wj6_A 13 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINSQGEYEEALKMAVKQG-NQLQ 89 (101)
T ss_dssp SCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCCSHHHHHHHHHHHHHHT-SEEE
T ss_pred CCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEECCCCCEEEEECHHHHHHHHHHHCCCC-CEEE
T ss_conf 6189999976970589845777898999999999873887--158998648999888845899999998751599-8999
Q ss_pred EEEEE
Q ss_conf 99730
Q 001809 979 FLVRD 983 (1010)
Q Consensus 979 l~V~d 983 (1010)
+.|++
T Consensus 90 m~V~~ 94 (101)
T 1wj6_A 90 MQVHE 94 (101)
T ss_dssp EECCB
T ss_pred EEEEE
T ss_conf 99961
No 5
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=1.00 E-value=1 Score=79.17 Aligned_cols=80 Identities=26% Similarity=0.425 Sum_probs=69.5
Q ss_pred CEEEEEEEC------CCCEEEEEECC----C-------CCHHHHHHHHHHHCC-CCCCEEEEEEECCCCCEEEEECCCCH
Q ss_conf 719999982------89729999479----9-------676899999998807-44662666752399995998047838
Q 001809 901 SKIIVKATY------KEDIIRFKFDP----S-------AGCFQLYEEVARRLK-LQNGTFQLKYLDDEEEWVMLVSDSDL 962 (1010)
Q Consensus 901 ~~~tVKAty------~ed~iRF~~~~----s-------~g~~~L~~EIakRf~-ld~~~f~lKYlDDd~EWVlLtcDaDL 962 (1010)
.+++|||-+ +.|+.||.+.. . ..|.+|++.|.+.|. |....|.|||.|.|++.|.+++|.||
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL 83 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEEL 83 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHH
T ss_pred CEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCHHHH
T ss_conf 46999999816777787269988336777542224466669999999999754457983899999899998976488999
Q ss_pred HHHHHHHHHHCCCEEEEEEEE
Q ss_conf 999999857099749999730
Q 001809 963 QECFDILESLGKRSVRFLVRD 983 (1010)
Q Consensus 963 ~EC~di~~~s~~~~vkl~V~d 983 (1010)
.+++...+ -.++||+|..
T Consensus 84 ~~Al~~~~---~~~lRlyVke 101 (102)
T 2kkc_A 84 TMAMSYVK---DDIFRIYIKE 101 (102)
T ss_dssp HHHHHHCC---SSEEEEEEEE
T ss_pred HHHHHHCC---CCEEEEEEEC
T ss_conf 99997158---8759999972
No 6
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=1.00 E-value=1 Score=78.14 Aligned_cols=80 Identities=24% Similarity=0.416 Sum_probs=72.1
Q ss_pred CEEEEEEECCCCEEEEEECC--CCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 71999998289729999479--9676899999998807446626667523999959980478389999998570997499
Q 001809 901 SKIIVKATYKEDIIRFKFDP--SAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVR 978 (1010)
Q Consensus 901 ~~~tVKAty~ed~iRF~~~~--s~g~~~L~~EIakRf~ld~~~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~s~~~~vk 978 (1010)
..+++|++|++|..||.+.- ...|.+|..-|-..|+|. .|++||+|+|+|-|.++.|++++|++-|++..+ +.++
T Consensus 5 ~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k~~-n~L~ 81 (87)
T 2bkf_A 5 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSINSQGEYEEALKMAVKQG-NQLQ 81 (87)
T ss_dssp CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEEECSHHHHHHHHHHHHHTT-TEEE
T ss_pred CEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHCCCC--CEEEEEECCCCCEEEEECHHHHHHHHHHHCCCC-CEEE
T ss_conf 6089999976970589845677898999999999873887--158998748998888855899999998741599-8999
Q ss_pred EEEEE
Q ss_conf 99730
Q 001809 979 FLVRD 983 (1010)
Q Consensus 979 l~V~d 983 (1010)
+.|++
T Consensus 82 m~v~~ 86 (87)
T 2bkf_A 82 MQVHE 86 (87)
T ss_dssp EEEEE
T ss_pred EEEEC
T ss_conf 99855
No 7
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=72.13 Aligned_cols=80 Identities=19% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCEEEEEEECCCCEEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 9719999982897299994799--67689999999880744662666752399995998047838999999857099749
Q 001809 900 GSKIIVKATYKEDIIRFKFDPS--AGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSV 977 (1010)
Q Consensus 900 ~~~~tVKAty~ed~iRF~~~~s--~g~~~L~~EIakRf~ld~~~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~s~~~~v 977 (1010)
++.+.||+.|+.|..||.+.++ ..|.+|+.-|.+.+.|.+..|.++|.|.|++++-+++|.+|.+++..++ ...
T Consensus 4 ~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~----plL 79 (86)
T 1wmh_B 4 MSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGP----PPL 79 (86)
T ss_dssp -CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSS----SCE
T ss_pred CCEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHCC----CCE
T ss_conf 8879998633880467672688787889999999997578998789999889999761458899999997288----747
Q ss_pred EEEEEE
Q ss_conf 999730
Q 001809 978 RFLVRD 983 (1010)
Q Consensus 978 kl~V~d 983 (1010)
||+|+.
T Consensus 80 Rl~Iqr 85 (86)
T 1wmh_B 80 RLLVQK 85 (86)
T ss_dssp EEEEEC
T ss_pred EEEEEC
T ss_conf 999971
No 8
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=1.00 E-value=1 Score=67.82 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=64.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHCCCC-----CCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 9729999479967689999999880744-----6626667523999959980478389999998570997499997
Q 001809 911 EDIIRFKFDPSAGCFQLYEEVARRLKLQ-----NGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFLV 981 (1010)
Q Consensus 911 ed~iRF~~~~s~g~~~L~~EIakRf~ld-----~~~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~s~~~~vkl~V 981 (1010)
.|.+-.+++++..|.+|.+.|.+||++. ...+.|||.|+|+++|.|.+|.||+-+++.++....+++.+-|
T Consensus 1 ~D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~~~~~~~leiWv 76 (77)
T 1pqs_A 1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNIRL 76 (77)
T ss_dssp CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 9789999679998999999999997466564656506899995899998773889999999997761067089997
No 9
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=1.00 E-value=1 Score=62.29 Aligned_cols=78 Identities=19% Similarity=0.336 Sum_probs=67.6
Q ss_pred CEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 719999982897299994799676899999998807446626667523-9999599804783899999985709974999
Q 001809 901 SKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLD-DEEEWVMLVSDSDLQECFDILESLGKRSVRF 979 (1010)
Q Consensus 901 ~~~tVKAty~ed~iRF~~~~s~g~~~L~~EIakRf~ld~~~f~lKYlD-Dd~EWVlLtcDaDL~EC~di~~~s~~~~vkl 979 (1010)
..++||+.|. ++|-.++++...|.+|++-|+.||++.....+|.|.| |++||| |..|.||+++..-.+. . .+.|
T Consensus 4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~~n--~-~LtL 78 (83)
T 1oey_A 4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-PLSEDSMKDAWGQVKN--Y-CLTL 78 (83)
T ss_dssp SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-ECCTTTHHHHHTTCBT--T-EEEE
T ss_pred CCEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEE-CCCHHHHHHHHHHCCC--C-CEEE
T ss_conf 7489999999-99999977999989999999998589964149996078789701-3575779999975238--8-0899
Q ss_pred EEEE
Q ss_conf 9730
Q 001809 980 LVRD 983 (1010)
Q Consensus 980 ~V~d 983 (1010)
.+..
T Consensus 79 ~C~~ 82 (83)
T 1oey_A 79 WCEN 82 (83)
T ss_dssp EECC
T ss_pred EEEC
T ss_conf 9826
No 10
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=1.00 E-value=1 Score=58.04 Aligned_cols=75 Identities=24% Similarity=0.359 Sum_probs=61.3
Q ss_pred CEEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 71999998289729999479967689999999880744662666752399995998047838999999857099749999
Q 001809 901 SKIIVKATYKEDIIRFKFDPSAGCFQLYEEVARRLKLQNGTFQLKYLDDEEEWVMLVSDSDLQECFDILESLGKRSVRFL 980 (1010)
Q Consensus 901 ~~~tVKAty~ed~iRF~~~~s~g~~~L~~EIakRf~ld~~~f~lKYlDDd~EWVlLtcDaDL~EC~di~~~s~~~~vkl~ 980 (1010)
.++.||+-|.+|++-.|++++-.|.+|+..|..|+++++.....|.=|.++| -|..|+||+.++. +.-||.
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde~~g~--~i~sD~dl~~aiq-------rn~KL~ 81 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFDGSGE--EIKTDSQVSNIIQ-------AKLKIS 81 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSSSCCS--CCCSHHHHHHHHH-------TTCCEE
T ss_pred CCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCCCHHHHHHHHH-------HCCEEE
T ss_conf 7568999945868999878997899999999877556654789843788788--3557788999987-------367368
Q ss_pred EEEC
Q ss_conf 7306
Q 001809 981 VRDI 984 (1010)
Q Consensus 981 V~d~ 984 (1010)
|+|+
T Consensus 82 l~~~ 85 (85)
T 1ip9_A 82 VHDI 85 (85)
T ss_dssp EEEC
T ss_pred EECC
T ss_conf 8539
Done!